BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024975
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 12/207 (5%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L N P+E + F Y F
Sbjct: 34 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
+ + YP E + Y++ + GV + +R +T V + E ++ V+
Sbjct: 87 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
D + EE FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVA 231
+S DI + + I+ A
Sbjct: 205 SSSSAEDIGSQCYKYGAKKLISCYRTA 231
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 12/207 (5%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L N P+E + F Y F
Sbjct: 34 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
+ + YP E + Y++ + GV + +R +T V + E ++ V+
Sbjct: 87 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
D + EE FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVA 231
S DI + + I+ A
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA 231
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 12/207 (5%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS Y+ L N P+E + F Y F
Sbjct: 34 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSXYRYLWSNGPKECLEFADYTF-- 86
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
+ + YP E + Y++ + GV + +R +T V + E ++ V+
Sbjct: 87 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
D + EE FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVA 231
S DI + + I+ A
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA 231
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L N P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
S DI + + I+ A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L + P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSDGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
S DI + + I+ A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L + P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSSGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
S DI + + I+ A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 10/206 (4%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSKGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
S DI + + I+ A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 28 VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
V ++E+ GG W YTS ++P+ V P PV+ S LY+ L+ N
Sbjct: 36 VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 94
Query: 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
P EL G+ F + + +P + Y + +A+ + ++L T+VL+
Sbjct: 95 PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 144
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
+ W V K K + ++ FDAV +CNGH+ VP + + G+D + PG +HS
Sbjct: 145 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 204
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221
+R P F + V+++G +S D+ R L AK
Sbjct: 205 LFREPELFVGESVLVVGGASSANDLVRHLTPVAK 238
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 28 VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
V ++E+ GG W YTS ++P+ V P PV+ S LY+ L+ N
Sbjct: 34 VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 92
Query: 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
P EL G+ F + + +P + Y + +A+ + ++L T+VL+
Sbjct: 93 PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 142
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
+ W V K K + ++ FDAV +CNGH+ VP + + G+D + PG +HS
Sbjct: 143 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 202
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221
+R P F + V+++G +S D+ R L AK
Sbjct: 203 LFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCAIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 39/217 (17%)
Query: 23 REGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82
+ G V+ E GE VGG+W + NRYP R++ G+ A
Sbjct: 30 QAGMKVLGIEAGEDVGGTWYW-------------NRYP-------GCRLDTESYAYGYFA 69
Query: 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKV 141
+ +E S + P E+LRY+ A V + R +T V AR VE+++ W+V
Sbjct: 70 LKGIIPEWEWSENFASQP---EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEV 126
Query: 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------- 193
+ ++VV T ++ G S R+ + GIDS+ G+ HS R P
Sbjct: 127 -TLDNEEVV---TCRFLISATGPLSASRMPDIKGIDSFKGESFHSS--RWPTDAEGAPKG 180
Query: 194 -PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
F + V +IG A+G+ I A AKE+++ R+
Sbjct: 181 VDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRT 217
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
H +G TV +E VGG W + NRYP R ++
Sbjct: 38 HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
+ P + + + S +Y E+L YL++ A F + + +R T V +A L E
Sbjct: 78 SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
+W V++ + D+V + +VV G S G+D + G +H+ R P+
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
F + V +IG +SG+ +A A+++ + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
H +G TV +E VGG W + NRYP R ++
Sbjct: 38 HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
+ P + + + S +Y E+L YL++ A F + + +R T V +A L E
Sbjct: 78 SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
+W V++ + D+V + +VV G S G+D + G +H+ R P+
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
F + V +IG +SG+ +A A+++ + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
H +G TV +E VGG W + NRYP R ++
Sbjct: 38 HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
+ P + + + S +Y E+L YL++ A F + + +R T V +A L E
Sbjct: 78 SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
+W V++ + D+V + +VV G S G+D + G +H+ R P+
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
F + V +IG +SG+ +A A+++ + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS--LRVNLPRE 76
HEL G T V ++K + GG+W + NRYP S +S R + R+
Sbjct: 62 HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLYRFSFDRD 105
Query: 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVE 135
L+ + S Y E+L YL++ F + + + TEV +A L +
Sbjct: 106 LL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD 153
Query: 136 SNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
N W+V + E + A V N G S +PG+D++ G+ +H+ +
Sbjct: 154 ENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGK 207
Query: 194 PFQDQVVILIGHYASGLDIKRDLA 217
+ V +IG ++G + LA
Sbjct: 208 SLAGRRVGVIGTGSTGQQVITSLA 231
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS--LRVNLPRE 76
HEL G T V ++K + GG+W + NRYP S +S R + R+
Sbjct: 29 HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLYRFSFDRD 72
Query: 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVE 135
L+ + S Y E+L YL++ F + + + TEV +A L +
Sbjct: 73 LL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD 120
Query: 136 SNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
N W+V + E + A V N G S +PG+D++ G+ +H+ +
Sbjct: 121 ENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGK 174
Query: 194 PFQDQVVILIGHYASGLDIKRDLA 217
+ V +IG ++G + LA
Sbjct: 175 SLAGRRVGVIGTGSTGQQVITSLA 198
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 99 YPGHEEVLRYLQNFAREFGVD-------QVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151
YP EVL YL + +++ + Q V E L + +W +
Sbjct: 72 YPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLAR--------- 122
Query: 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLD 211
AV+ G + + G++S+ G Q+HS +Y P PF V +IG SG
Sbjct: 123 -----AVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQ 177
Query: 212 IKRDLAGFAKEVHI 225
I +++ A+ I
Sbjct: 178 ILAEVSTVAETTWI 191
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 89 NYEGSVDLRRYPGHE-EVLRYLQNFAREFGVDQVVR--LHTEVLNARLVESNKWKVKSRK 145
N + +D R P ++ + N A G+D+ R + T V+N +L K +V+
Sbjct: 24 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY---KNRVEFDS 80
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
D+V EE F +VC F R+ P + W GK ++ H +P+
Sbjct: 81 AIDLVLEE-FSIDIVCLAGFM--RILSGPFVQKWNGKMLNIHPSLLPS 125
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 89 NYEGSVDLRRYPGHE-EVLRYLQNFAREFGVDQVVR--LHTEVLNARLVESNKWKVKSRK 145
N + +D R P ++ + N A G+D+ R + T V+N +L K +V+
Sbjct: 13 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY---KNRVEFDS 69
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
D+V EE F +VC F R+ P + W GK ++ H +P+
Sbjct: 70 AIDLVLEE-FSIDIVCLAGFM--RILSGPFVQKWNGKMLNIHPSLLPS 114
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 89 NYEGSVDLRRYPGHE-EVLRYLQNFAREFGVDQVVR--LHTEVLNARLVESNKWKVKSRK 145
N + +D R P ++ + N A G+D+ R + T V+N +L K +V+
Sbjct: 13 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY---KNRVEFDS 69
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
D+V EE F +VC F R+ P + W GK ++ H +P+
Sbjct: 70 AIDLVLEE-FSIDIVCLAGFM--RILSGPFVQKWNGKMLNIHPSLLPS 114
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 121 VVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWP 180
+ R E LNA L +S V+ KD + + D VV+ G +P++ ++ D +
Sbjct: 303 LTRARFEDLNAALFKSTLEPVEQVLKDAKISKSQIDEVVLVGGSTRIPKVQKLLS-DFFD 361
Query: 181 GKQMH 185
GKQ+
Sbjct: 362 GKQLE 366
>pdb|3E61|A Chain A, Crystal Structure Of A Putative Transcriptional Repressor
Of Ribose Operon From Staphylococcus Saprophyticus
Subsp. Saprophyticus
pdb|3E61|B Chain B, Crystal Structure Of A Putative Transcriptional Repressor
Of Ribose Operon From Staphylococcus Saprophyticus
Subsp. Saprophyticus
Length = 277
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 19/75 (25%)
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG-------------HFSVPR 169
R+ ++L A L++++K K D+++E + D+++ N HF VP
Sbjct: 152 RIDYKMLEATLLDNDK------KFIDLIKELSIDSIICSNDLLAINVLGIVQRYHFKVPA 205
Query: 170 LAQVPGIDSWPGKQM 184
Q+ G D+ P +M
Sbjct: 206 EIQIIGYDNIPFSEM 220
>pdb|3E9A|A Chain A, Crystal Structure Of 2-dehydro-3-deoxyphosphooctonate
Aldolase From Vibrio Cholerae O1 Biovar Eltor Str.
N16961
Length = 286
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 93 SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTE 127
SV R PG EE ++ Q FGV + +HTE
Sbjct: 68 SVHSYRGPGLEEGMKIFQELKETFGVKIITDVHTE 102
>pdb|2DT4|A Chain A, Crystal Structure Of Pyrococcus Horikoshii A Plant- And
Prokaryote- Conserved (Ppc) Protein At 1.60 Resolution
Length = 143
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 92 GSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
G L R P EE+L Y++NF ++ G++ +
Sbjct: 9 GRTYLFRVPEGEELLTYIKNFCKKEGIETAI 39
>pdb|3PG6|A Chain A, The Carboxyl Terminal Domain Of Human Deltex 3-Like
pdb|3PG6|B Chain B, The Carboxyl Terminal Domain Of Human Deltex 3-Like
pdb|3PG6|C Chain C, The Carboxyl Terminal Domain Of Human Deltex 3-Like
pdb|3PG6|D Chain D, The Carboxyl Terminal Domain Of Human Deltex 3-Like
Length = 159
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 21 LLREGHTVVVYEKGEQVGGSWIYTSETESDP----LGVDPNRYPVHSSLYKSLRVNLPRE 76
L+ G T +KG Q GS ++T +S P G Y + + + N +
Sbjct: 14 LVPRGSTSYGIQKGNQPEGSMVFTVSRDSLPGYESFGTIVITYSMKAGIQTEEHPNPGKR 73
Query: 77 LMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVV 122
G Q ++ N EG L+ Y ++ L + ++R GV V+
Sbjct: 74 YPGIQRTAYLPDNKEGRKVLKLLYRAFDQKLIFTVGYSRVLGVSDVI 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,974,020
Number of Sequences: 62578
Number of extensions: 328261
Number of successful extensions: 902
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 37
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)