Query 024975
Match_columns 259
No_of_seqs 164 out of 2102
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 08:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 100.0 1.3E-40 2.9E-45 274.2 27.8 252 2-254 10-262 (461)
2 PF00743 FMO-like: Flavin-bind 100.0 1.2E-37 2.6E-42 259.7 18.2 209 3-230 2-216 (531)
3 KOG1399 Flavin-containing mono 100.0 1.5E-36 3.2E-41 245.9 22.2 211 1-228 5-217 (448)
4 COG2072 TrkA Predicted flavopr 100.0 1.7E-35 3.7E-40 243.1 22.1 199 2-230 8-208 (443)
5 PF13738 Pyr_redox_3: Pyridine 100.0 5E-34 1.1E-38 213.6 13.4 198 6-230 1-200 (203)
6 COG0492 TrxB Thioredoxin reduc 100.0 1.7E-28 3.7E-33 190.9 17.9 200 1-256 2-208 (305)
7 TIGR01292 TRX_reduct thioredox 100.0 1.6E-26 3.5E-31 183.3 20.4 199 3-255 1-205 (300)
8 PRK15317 alkyl hydroperoxide r 99.9 1.2E-25 2.5E-30 189.7 20.8 200 2-256 211-416 (517)
9 TIGR03143 AhpF_homolog putativ 99.9 3E-25 6.5E-30 188.4 19.7 198 2-255 4-207 (555)
10 PRK10262 thioredoxin reductase 99.9 5.9E-25 1.3E-29 175.6 19.9 199 2-256 6-214 (321)
11 TIGR03140 AhpF alkyl hydropero 99.9 6.3E-25 1.4E-29 185.1 19.5 200 2-256 212-417 (515)
12 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1.9E-25 4.1E-30 182.2 13.6 226 2-256 4-243 (454)
13 TIGR01421 gluta_reduc_1 glutat 99.9 8.7E-25 1.9E-29 181.5 15.5 218 1-255 1-235 (450)
14 TIGR01424 gluta_reduc_2 glutat 99.9 2.4E-24 5.1E-29 179.0 14.5 196 2-230 2-199 (446)
15 PRK06467 dihydrolipoamide dehy 99.9 6.4E-24 1.4E-28 177.3 15.7 216 2-255 4-242 (471)
16 PRK06370 mercuric reductase; V 99.9 7.2E-24 1.6E-28 177.1 15.3 188 2-230 5-204 (463)
17 PRK05249 soluble pyridine nucl 99.9 1.1E-23 2.5E-28 176.1 16.4 217 2-255 5-244 (461)
18 PF13434 K_oxygenase: L-lysine 99.9 3.3E-25 7.1E-30 176.3 6.7 214 2-230 2-225 (341)
19 PLN02507 glutathione reductase 99.9 7.6E-24 1.6E-28 177.5 14.4 225 2-255 25-272 (499)
20 PRK06116 glutathione reductase 99.9 2.4E-24 5.1E-29 179.5 11.3 215 2-255 4-236 (450)
21 PTZ00058 glutathione reductase 99.9 4.2E-24 9.1E-29 179.9 12.9 221 2-255 48-306 (561)
22 TIGR02053 MerA mercuric reduct 99.9 5.3E-24 1.1E-28 178.0 13.4 194 3-230 1-199 (463)
23 PRK06416 dihydrolipoamide dehy 99.9 2.6E-23 5.6E-28 173.9 17.1 191 2-230 4-205 (462)
24 PRK07251 pyridine nucleotide-d 99.9 2.2E-23 4.8E-28 173.1 15.9 183 2-230 3-190 (438)
25 PRK14694 putative mercuric red 99.9 5.4E-23 1.2E-27 171.9 17.2 218 2-255 6-246 (468)
26 PRK14727 putative mercuric red 99.9 6.1E-23 1.3E-27 171.9 17.5 225 2-255 16-256 (479)
27 PRK06115 dihydrolipoamide dehy 99.9 7.9E-23 1.7E-27 170.6 17.5 199 2-230 3-207 (466)
28 PRK06292 dihydrolipoamide dehy 99.9 1.1E-23 2.4E-28 176.1 12.2 213 2-255 3-237 (460)
29 PRK05976 dihydrolipoamide dehy 99.9 3.8E-23 8.2E-28 173.1 15.3 200 2-230 4-213 (472)
30 PRK13748 putative mercuric red 99.9 6.4E-23 1.4E-27 175.5 16.2 217 3-255 99-338 (561)
31 PRK08010 pyridine nucleotide-d 99.9 3.9E-23 8.5E-28 171.8 14.4 209 2-256 3-228 (441)
32 KOG0404 Thioredoxin reductase 99.9 1.3E-22 2.7E-27 145.5 14.5 191 3-247 9-211 (322)
33 PLN02546 glutathione reductase 99.9 2.2E-23 4.8E-28 175.7 11.7 191 2-230 79-285 (558)
34 TIGR01438 TGR thioredoxin and 99.9 3.2E-22 6.9E-27 167.2 16.5 195 2-229 2-212 (484)
35 TIGR01423 trypano_reduc trypan 99.9 4.7E-23 1E-27 171.8 11.0 202 2-230 3-223 (486)
36 TIGR01350 lipoamide_DH dihydro 99.9 3.4E-22 7.5E-27 167.3 16.2 195 2-230 1-203 (461)
37 PRK06327 dihydrolipoamide dehy 99.9 2.9E-22 6.3E-27 167.8 15.3 224 2-256 4-253 (475)
38 PTZ00052 thioredoxin reductase 99.9 7.9E-23 1.7E-27 171.6 10.5 194 2-230 5-215 (499)
39 PRK06912 acoL dihydrolipoamide 99.9 2.2E-22 4.7E-27 167.9 12.8 217 4-256 2-240 (458)
40 PRK07846 mycothione reductase; 99.9 3.1E-22 6.8E-27 166.2 13.3 212 2-256 1-235 (451)
41 PRK12831 putative oxidoreducta 99.9 6.8E-22 1.5E-26 164.4 14.3 164 2-232 140-316 (464)
42 PRK07818 dihydrolipoamide dehy 99.9 1.8E-21 4E-26 162.8 16.8 216 2-256 4-242 (466)
43 PTZ00153 lipoamide dehydrogena 99.9 1.8E-21 3.9E-26 166.2 15.8 213 2-230 116-345 (659)
44 COG3634 AhpF Alkyl hydroperoxi 99.9 1.2E-21 2.7E-26 149.3 12.6 201 2-256 211-419 (520)
45 PRK07845 flavoprotein disulfid 99.9 5E-21 1.1E-25 159.9 17.1 200 2-230 1-210 (466)
46 PRK12779 putative bifunctional 99.9 2.3E-21 5E-26 171.9 15.0 161 2-231 306-481 (944)
47 KOG0405 Pyridine nucleotide-di 99.9 3E-21 6.6E-26 147.1 12.7 199 2-230 20-222 (478)
48 PRK09897 hypothetical protein; 99.9 1.1E-20 2.5E-25 157.7 17.1 210 2-230 1-245 (534)
49 TIGR03452 mycothione_red mycot 99.9 6.3E-21 1.4E-25 158.6 14.2 210 2-255 2-237 (452)
50 TIGR01316 gltA glutamate synth 99.9 1.8E-20 3.8E-25 155.7 15.1 160 2-231 133-306 (449)
51 PRK13512 coenzyme A disulfide 99.8 6.3E-20 1.4E-24 152.2 16.2 170 2-230 1-181 (438)
52 PRK09853 putative selenate red 99.8 3E-20 6.6E-25 163.0 14.4 157 2-230 539-703 (1019)
53 PRK04965 NADH:flavorubredoxin 99.8 7E-20 1.5E-24 149.5 14.8 166 1-230 1-174 (377)
54 PRK09564 coenzyme A disulfide 99.8 1E-19 2.2E-24 151.7 15.2 173 3-230 1-182 (444)
55 PRK12778 putative bifunctional 99.8 5E-20 1.1E-24 161.9 13.7 161 2-231 431-605 (752)
56 KOG1335 Dihydrolipoamide dehyd 99.8 5.7E-20 1.2E-24 141.9 12.0 230 2-256 39-281 (506)
57 COG4529 Uncharacterized protei 99.8 6.3E-19 1.4E-23 141.1 18.2 212 2-230 1-231 (474)
58 PRK12775 putative trifunctiona 99.8 1.2E-19 2.6E-24 162.4 15.5 165 2-234 430-609 (1006)
59 COG2081 Predicted flavoprotein 99.8 5.4E-20 1.2E-24 143.8 11.1 161 1-170 2-171 (408)
60 PRK11749 dihydropyrimidine deh 99.8 8.9E-20 1.9E-24 152.2 11.9 159 2-230 140-307 (457)
61 PRK12814 putative NADPH-depend 99.8 1.7E-19 3.6E-24 155.8 12.1 159 2-230 193-357 (652)
62 PLN02852 ferredoxin-NADP+ redu 99.8 7.2E-19 1.6E-23 145.4 14.9 160 2-230 26-220 (491)
63 PRK09754 phenylpropionate diox 99.8 3.1E-19 6.6E-24 146.5 12.7 168 2-230 3-177 (396)
64 TIGR03315 Se_ygfK putative sel 99.8 4.6E-19 9.9E-24 156.3 14.0 157 2-230 537-701 (1012)
65 PRK14989 nitrite reductase sub 99.8 2.7E-19 5.9E-24 157.4 12.6 169 2-230 3-178 (847)
66 KOG4716 Thioredoxin reductase 99.8 9.5E-19 2.1E-23 133.2 13.0 202 2-230 19-231 (503)
67 TIGR01372 soxA sarcosine oxida 99.8 5.1E-18 1.1E-22 152.7 19.3 199 2-255 163-379 (985)
68 PRK12770 putative glutamate sy 99.8 2.5E-18 5.4E-23 139.0 14.5 171 2-230 18-206 (352)
69 COG1252 Ndh NADH dehydrogenase 99.8 4.2E-19 9.1E-24 141.9 9.0 196 1-257 2-239 (405)
70 PRK12769 putative oxidoreducta 99.8 3.2E-18 6.9E-23 148.4 14.5 160 2-230 327-502 (654)
71 TIGR01318 gltD_gamma_fam gluta 99.8 5.6E-18 1.2E-22 141.3 14.9 159 2-230 141-316 (467)
72 TIGR02374 nitri_red_nirB nitri 99.8 1.8E-18 3.9E-23 152.2 12.0 165 5-230 1-173 (785)
73 PRK12809 putative oxidoreducta 99.8 6E-18 1.3E-22 146.2 14.5 160 2-230 310-485 (639)
74 PTZ00318 NADH dehydrogenase-li 99.8 7.6E-19 1.7E-23 145.2 8.6 199 2-255 10-256 (424)
75 PRK12810 gltD glutamate syntha 99.8 3.4E-18 7.4E-23 143.0 12.5 159 2-230 143-315 (471)
76 PF03486 HI0933_like: HI0933-l 99.8 4E-19 8.7E-24 144.3 3.8 153 3-170 1-170 (409)
77 COG3486 IucD Lysine/ornithine 99.7 3.9E-17 8.5E-22 127.7 12.8 209 2-230 5-224 (436)
78 TIGR01317 GOGAT_sm_gam glutama 99.7 8.2E-17 1.8E-21 134.9 12.5 159 3-230 144-317 (485)
79 PRK12771 putative glutamate sy 99.7 9.7E-17 2.1E-21 137.2 12.3 158 3-230 138-301 (564)
80 PRK13984 putative oxidoreducta 99.7 1E-16 2.2E-21 138.3 12.4 156 2-227 283-454 (604)
81 PTZ00188 adrenodoxin reductase 99.7 4.2E-16 9.1E-21 127.3 13.8 42 2-43 39-81 (506)
82 PRK06567 putative bifunctional 99.7 1.1E-16 2.3E-21 139.5 10.9 39 2-40 383-421 (1028)
83 TIGR03169 Nterm_to_SelD pyridi 99.7 1.2E-16 2.7E-21 130.0 10.1 163 4-227 1-181 (364)
84 KOG1336 Monodehydroascorbate/f 99.7 1.5E-15 3.2E-20 121.3 11.7 162 3-230 75-246 (478)
85 PF13454 NAD_binding_9: FAD-NA 99.7 3.7E-15 8E-20 106.2 12.7 138 6-164 1-155 (156)
86 COG0493 GltD NADPH-dependent g 99.6 1.4E-15 3.1E-20 124.8 11.1 158 3-230 124-296 (457)
87 PRK04176 ribulose-1,5-biphosph 99.6 8.5E-15 1.8E-19 112.5 12.7 142 2-167 25-174 (257)
88 TIGR02032 GG-red-SF geranylger 99.6 2E-14 4.3E-19 113.7 12.9 147 3-167 1-149 (295)
89 TIGR00292 thiazole biosynthesi 99.6 2E-14 4.4E-19 110.1 12.4 141 2-166 21-170 (254)
90 COG0644 FixC Dehydrogenases (f 99.6 1.7E-14 3.6E-19 118.5 12.5 147 1-166 2-152 (396)
91 PRK06847 hypothetical protein; 99.6 2.5E-14 5.3E-19 117.1 12.0 158 2-169 4-166 (375)
92 KOG1800 Ferredoxin/adrenodoxin 99.6 6.3E-14 1.4E-18 108.7 13.0 147 2-217 20-179 (468)
93 PRK10157 putative oxidoreducta 99.6 5.7E-14 1.2E-18 116.4 12.8 154 2-166 5-164 (428)
94 PRK06183 mhpA 3-(3-hydroxyphen 99.5 9.3E-14 2E-18 118.5 12.8 160 2-169 10-177 (538)
95 COG1635 THI4 Ribulose 1,5-bisp 99.5 1.9E-13 4E-18 98.6 11.5 137 3-164 31-176 (262)
96 PRK08244 hypothetical protein; 99.5 3E-13 6.5E-18 114.4 14.9 151 1-168 1-161 (493)
97 PRK05714 2-octaprenyl-3-methyl 99.5 4E-14 8.7E-19 116.9 9.2 161 1-169 1-171 (405)
98 PRK10015 oxidoreductase; Provi 99.5 4.9E-13 1.1E-17 110.7 14.8 153 2-167 5-165 (429)
99 TIGR02023 BchP-ChlP geranylger 99.5 4.6E-13 1E-17 109.9 14.5 147 3-168 1-157 (388)
100 TIGR00275 flavoprotein, HI0933 99.5 1.1E-13 2.3E-18 113.7 10.2 151 6-169 1-163 (400)
101 PF01494 FAD_binding_3: FAD bi 99.5 1.7E-13 3.7E-18 111.2 11.1 154 3-169 2-175 (356)
102 PF07992 Pyr_redox_2: Pyridine 99.5 3.6E-14 7.7E-19 106.0 6.1 148 4-204 1-159 (201)
103 PRK06185 hypothetical protein; 99.5 2.6E-13 5.7E-18 112.2 11.5 159 2-167 6-170 (407)
104 PRK06834 hypothetical protein; 99.5 5.3E-13 1.2E-17 112.2 13.3 147 2-168 3-158 (488)
105 PRK08163 salicylate hydroxylas 99.5 1.2E-13 2.6E-18 113.8 9.4 160 2-169 4-169 (396)
106 PF01946 Thi4: Thi4 family; PD 99.5 7.4E-14 1.6E-18 101.2 7.0 138 2-165 17-164 (230)
107 PRK08773 2-octaprenyl-3-methyl 99.5 2.2E-13 4.8E-18 112.1 10.7 154 2-167 6-170 (392)
108 COG3380 Predicted NAD/FAD-depe 99.5 1.1E-13 2.4E-18 102.9 7.9 153 2-164 1-158 (331)
109 KOG2495 NADH-dehydrogenase (ub 99.5 3.4E-13 7.4E-18 106.3 10.9 202 2-256 55-302 (491)
110 PRK06184 hypothetical protein; 99.5 6E-13 1.3E-17 112.8 13.2 161 2-169 3-171 (502)
111 PRK11445 putative oxidoreducta 99.5 7.3E-13 1.6E-17 107.2 13.1 156 2-168 1-159 (351)
112 PRK09126 hypothetical protein; 99.5 2.3E-13 4.9E-18 112.1 10.3 157 1-168 2-169 (392)
113 PRK07364 2-octaprenyl-6-methox 99.5 2.3E-13 5E-18 112.9 10.3 158 2-169 18-184 (415)
114 PRK08013 oxidoreductase; Provi 99.5 4.3E-13 9.4E-18 110.5 11.6 156 2-169 3-171 (400)
115 PRK07588 hypothetical protein; 99.5 2.5E-13 5.3E-18 111.8 10.0 157 3-170 1-162 (391)
116 TIGR01790 carotene-cycl lycope 99.5 7E-13 1.5E-17 109.0 12.7 141 4-166 1-141 (388)
117 TIGR02028 ChlP geranylgeranyl 99.5 1.1E-12 2.3E-17 107.9 13.7 152 3-167 1-161 (398)
118 PRK07333 2-octaprenyl-6-methox 99.5 3.3E-13 7.1E-18 111.5 10.8 156 2-167 1-168 (403)
119 TIGR01988 Ubi-OHases Ubiquinon 99.5 3.9E-13 8.4E-18 110.4 10.9 154 4-168 1-165 (385)
120 COG0654 UbiH 2-polyprenyl-6-me 99.5 5.2E-13 1.1E-17 109.5 11.4 157 1-169 1-165 (387)
121 PRK07045 putative monooxygenas 99.5 6.3E-13 1.4E-17 109.2 11.9 157 2-169 5-168 (388)
122 PRK07190 hypothetical protein; 99.5 1.3E-12 2.8E-17 109.8 13.8 158 2-169 5-168 (487)
123 TIGR03385 CoA_CoA_reduc CoA-di 99.5 4.8E-13 1E-17 111.2 11.1 111 110-230 51-170 (427)
124 PLN02463 lycopene beta cyclase 99.5 5.8E-13 1.3E-17 110.1 11.3 143 2-167 28-170 (447)
125 PRK07608 ubiquinone biosynthes 99.5 5.4E-13 1.2E-17 109.7 10.8 152 1-168 4-169 (388)
126 PLN00093 geranylgeranyl diphos 99.5 1.6E-12 3.5E-17 108.0 13.5 149 1-167 38-200 (450)
127 PRK06475 salicylate hydroxylas 99.5 7.2E-13 1.6E-17 109.3 11.3 163 1-170 1-171 (400)
128 PRK08020 ubiF 2-octaprenyl-3-m 99.5 4.3E-13 9.4E-18 110.3 9.7 153 2-168 5-171 (391)
129 PRK07236 hypothetical protein; 99.4 1.9E-12 4.1E-17 106.3 12.6 146 2-169 6-157 (386)
130 PRK08274 tricarballylate dehyd 99.4 3E-12 6.6E-17 107.6 14.0 163 2-167 4-193 (466)
131 PRK06126 hypothetical protein; 99.4 9.4E-12 2E-16 106.6 17.2 67 100-169 123-191 (545)
132 PRK07538 hypothetical protein; 99.4 3.6E-12 7.7E-17 105.6 13.8 160 3-169 1-168 (413)
133 PRK06753 hypothetical protein; 99.4 1.2E-12 2.6E-17 107.1 10.5 150 3-169 1-155 (373)
134 TIGR01984 UbiH 2-polyprenyl-6- 99.4 7.2E-13 1.6E-17 108.7 9.3 149 4-167 1-163 (382)
135 PRK08243 4-hydroxybenzoate 3-m 99.4 2.5E-12 5.5E-17 105.7 12.4 158 1-169 1-166 (392)
136 PRK05868 hypothetical protein; 99.4 1E-12 2.3E-17 107.1 10.0 157 2-169 1-163 (372)
137 PRK08849 2-octaprenyl-3-methyl 99.4 1.2E-12 2.7E-17 107.3 10.3 155 2-169 3-170 (384)
138 PLN02697 lycopene epsilon cycl 99.4 5.3E-12 1.1E-16 106.1 14.0 140 2-166 108-248 (529)
139 PRK08132 FAD-dependent oxidore 99.4 3.1E-12 6.6E-17 109.6 12.6 158 2-168 23-187 (547)
140 PRK07494 2-octaprenyl-6-methox 99.4 2.5E-12 5.3E-17 105.8 11.5 157 2-168 7-169 (388)
141 PRK06617 2-octaprenyl-6-methox 99.4 9.7E-13 2.1E-17 107.5 8.9 153 2-169 1-163 (374)
142 PF05834 Lycopene_cycl: Lycope 99.4 5.1E-12 1.1E-16 103.0 13.0 134 4-165 1-141 (374)
143 TIGR01813 flavo_cyto_c flavocy 99.4 6.6E-12 1.4E-16 104.8 13.3 161 4-167 1-193 (439)
144 COG1251 NirB NAD(P)H-nitrite r 99.4 2.6E-12 5.6E-17 107.9 10.5 170 2-230 3-178 (793)
145 KOG0399 Glutamate synthase [Am 99.4 1.9E-12 4.1E-17 112.6 9.7 157 2-226 1785-1954(2142)
146 PRK06481 fumarate reductase fl 99.4 8.5E-12 1.8E-16 105.6 13.4 163 2-167 61-252 (506)
147 PRK13369 glycerol-3-phosphate 99.4 8.1E-12 1.7E-16 105.7 13.1 63 103-168 155-217 (502)
148 PLN02661 Putative thiazole syn 99.4 1.3E-11 2.7E-16 97.5 12.8 140 2-165 92-243 (357)
149 COG0579 Predicted dehydrogenas 99.4 1.2E-11 2.5E-16 100.3 12.9 61 103-168 153-213 (429)
150 PRK05732 2-octaprenyl-6-methox 99.4 4.7E-12 1E-16 104.4 10.8 60 101-167 110-170 (395)
151 TIGR02360 pbenz_hydroxyl 4-hyd 99.4 5.8E-12 1.3E-16 103.4 11.1 156 1-169 1-166 (390)
152 PRK12266 glpD glycerol-3-phosp 99.4 1.6E-11 3.6E-16 103.8 13.9 63 103-168 155-218 (508)
153 PRK11728 hydroxyglutarate oxid 99.4 8.7E-12 1.9E-16 102.6 12.0 57 102-166 148-204 (393)
154 TIGR01989 COQ6 Ubiquinone bios 99.4 3.4E-12 7.4E-17 106.3 9.1 63 101-169 115-186 (437)
155 PRK08850 2-octaprenyl-6-methox 99.4 4.2E-12 9.1E-17 104.9 9.5 156 2-169 4-171 (405)
156 PF12831 FAD_oxidored: FAD dep 99.3 4.6E-13 1E-17 110.9 3.0 147 4-164 1-148 (428)
157 TIGR03219 salicylate_mono sali 99.3 9.1E-12 2E-16 103.2 10.2 150 3-168 1-161 (414)
158 PRK11259 solA N-methyltryptoph 99.3 7.3E-12 1.6E-16 102.6 9.3 61 103-171 149-209 (376)
159 PF00070 Pyr_redox: Pyridine n 99.3 5.5E-11 1.2E-15 74.7 11.2 80 4-146 1-80 (80)
160 PF01266 DAO: FAD dependent ox 99.3 4.2E-13 9.1E-18 109.0 1.7 58 103-168 147-205 (358)
161 PRK07121 hypothetical protein; 99.3 3.7E-11 8.1E-16 101.6 13.0 63 102-167 176-240 (492)
162 PRK05192 tRNA uridine 5-carbox 99.3 2.6E-11 5.6E-16 102.4 11.4 146 2-166 4-157 (618)
163 PRK08294 phenol 2-monooxygenas 99.3 6.2E-11 1.3E-15 102.6 13.7 167 2-170 32-214 (634)
164 PRK12409 D-amino acid dehydrog 99.3 7.7E-11 1.7E-15 97.7 13.7 62 103-167 197-259 (410)
165 PRK06452 sdhA succinate dehydr 99.3 5.8E-11 1.3E-15 101.7 13.3 163 2-166 5-198 (566)
166 PRK07803 sdhA succinate dehydr 99.3 3.6E-11 7.7E-16 104.0 11.8 38 2-39 8-45 (626)
167 PRK06996 hypothetical protein; 99.3 2.1E-11 4.5E-16 100.5 9.9 150 2-164 11-172 (398)
168 PF00890 FAD_binding_2: FAD bi 99.3 1.2E-11 2.6E-16 102.7 8.6 65 101-167 139-204 (417)
169 PRK06263 sdhA succinate dehydr 99.3 3.3E-11 7.1E-16 102.9 11.3 162 2-166 7-197 (543)
170 PRK01747 mnmC bifunctional tRN 99.3 5.4E-11 1.2E-15 104.0 12.8 58 103-168 408-465 (662)
171 PTZ00139 Succinate dehydrogena 99.3 4.7E-11 1E-15 103.0 12.0 165 2-168 29-231 (617)
172 PRK07804 L-aspartate oxidase; 99.3 6.8E-11 1.5E-15 100.8 12.5 164 2-167 16-211 (541)
173 PLN02985 squalene monooxygenas 99.3 1.2E-10 2.6E-15 98.4 13.9 162 2-169 43-211 (514)
174 TIGR00551 nadB L-aspartate oxi 99.3 9.3E-11 2E-15 99.0 13.2 162 2-167 2-190 (488)
175 PRK06175 L-aspartate oxidase; 99.3 4.6E-11 9.9E-16 99.2 10.8 161 2-166 4-189 (433)
176 PRK08401 L-aspartate oxidase; 99.3 5.5E-11 1.2E-15 99.7 11.3 155 2-168 1-177 (466)
177 TIGR01812 sdhA_frdA_Gneg succi 99.3 7.9E-11 1.7E-15 101.3 12.4 162 4-167 1-192 (566)
178 TIGR01377 soxA_mon sarcosine o 99.3 3.7E-11 8E-16 98.6 9.8 57 103-167 145-201 (380)
179 PRK11101 glpA sn-glycerol-3-ph 99.3 1.1E-10 2.3E-15 99.7 12.7 63 103-167 149-212 (546)
180 PRK07573 sdhA succinate dehydr 99.3 6E-11 1.3E-15 102.7 11.3 60 107-168 174-234 (640)
181 PLN00128 Succinate dehydrogena 99.2 1.5E-10 3.3E-15 100.0 13.2 165 2-168 50-252 (635)
182 PRK09078 sdhA succinate dehydr 99.2 8.1E-11 1.8E-15 101.4 11.3 165 2-168 12-214 (598)
183 KOG2820 FAD-dependent oxidored 99.2 7.1E-11 1.5E-15 90.8 9.6 64 103-172 153-218 (399)
184 PRK08958 sdhA succinate dehydr 99.2 1.2E-10 2.6E-15 100.0 12.1 164 2-167 7-207 (588)
185 PRK07057 sdhA succinate dehydr 99.2 2.2E-10 4.9E-15 98.5 13.6 165 2-168 12-213 (591)
186 PRK06854 adenylylsulfate reduc 99.2 2.7E-10 5.9E-15 98.3 13.8 162 3-167 12-196 (608)
187 TIGR00136 gidA glucose-inhibit 99.2 3.5E-10 7.6E-15 95.5 13.7 147 3-166 1-154 (617)
188 PRK05945 sdhA succinate dehydr 99.2 1.9E-10 4.1E-15 98.9 12.1 164 2-167 3-198 (575)
189 PRK08275 putative oxidoreducta 99.2 2.4E-10 5.1E-15 97.9 12.4 65 101-167 135-201 (554)
190 TIGR03364 HpnW_proposed FAD de 99.2 1.7E-10 3.6E-15 94.2 11.0 34 3-36 1-34 (365)
191 PRK08071 L-aspartate oxidase; 99.2 1.5E-10 3.3E-15 98.0 10.9 162 2-167 3-191 (510)
192 TIGR03329 Phn_aa_oxid putative 99.2 6.9E-11 1.5E-15 99.2 8.7 58 103-169 183-240 (460)
193 COG0578 GlpA Glycerol-3-phosph 99.2 6.2E-10 1.3E-14 92.3 13.9 164 2-168 12-227 (532)
194 PLN02815 L-aspartate oxidase 99.2 2.6E-10 5.7E-15 97.7 12.2 163 2-167 29-223 (594)
195 PRK08205 sdhA succinate dehydr 99.2 3.5E-10 7.5E-15 97.4 12.9 63 102-166 139-206 (583)
196 PTZ00383 malate:quinone oxidor 99.2 2E-10 4.3E-15 96.2 10.7 59 103-168 211-275 (497)
197 PLN02927 antheraxanthin epoxid 99.2 7.7E-11 1.7E-15 101.1 8.2 159 2-169 81-251 (668)
198 TIGR01176 fum_red_Fp fumarate 99.2 5.5E-10 1.2E-14 95.8 13.2 164 2-167 3-196 (580)
199 PRK00711 D-amino acid dehydrog 99.2 2.5E-10 5.4E-15 94.8 10.8 57 103-167 201-258 (416)
200 PRK06069 sdhA succinate dehydr 99.2 3.2E-10 6.9E-15 97.6 11.7 163 2-166 5-200 (577)
201 PRK08641 sdhA succinate dehydr 99.2 5.7E-10 1.2E-14 96.0 12.4 164 2-167 3-201 (589)
202 TIGR01320 mal_quin_oxido malat 99.2 3.8E-10 8.2E-15 94.7 11.0 64 103-168 178-242 (483)
203 PRK12844 3-ketosteroid-delta-1 99.2 8.9E-10 1.9E-14 94.3 13.4 43 2-44 6-48 (557)
204 PRK09231 fumarate reductase fl 99.1 6E-10 1.3E-14 95.8 12.3 165 2-168 4-198 (582)
205 PF01134 GIDA: Glucose inhibit 99.1 1.6E-10 3.5E-15 92.7 8.3 141 4-164 1-150 (392)
206 PRK13339 malate:quinone oxidor 99.1 1.2E-09 2.6E-14 91.3 13.7 64 103-168 184-249 (497)
207 PRK12845 3-ketosteroid-delta-1 99.1 3.9E-10 8.4E-15 96.3 11.0 43 2-45 16-58 (564)
208 PTZ00306 NADH-dependent fumara 99.1 7.7E-10 1.7E-14 101.9 13.5 41 2-42 409-449 (1167)
209 PRK04965 NADH:flavorubredoxin 99.1 2E-09 4.3E-14 88.2 14.7 96 3-164 142-237 (377)
210 PRK12842 putative succinate de 99.1 1.6E-09 3.4E-14 93.3 14.5 43 2-44 9-51 (574)
211 COG0665 DadA Glycine/D-amino a 99.1 5.4E-10 1.2E-14 91.9 11.3 59 103-168 156-214 (387)
212 PRK12834 putative FAD-binding 99.1 1.2E-09 2.6E-14 93.6 13.4 42 2-43 4-47 (549)
213 PRK12839 hypothetical protein; 99.1 1.4E-09 3.1E-14 93.2 13.8 43 2-44 8-50 (572)
214 TIGR01789 lycopene_cycl lycope 99.1 1.1E-09 2.3E-14 89.2 12.4 134 4-166 1-138 (370)
215 PF13450 NAD_binding_8: NAD(P) 99.1 9.1E-11 2E-15 70.8 4.5 37 7-43 1-37 (68)
216 KOG2755 Oxidoreductase [Genera 99.1 3.3E-11 7.2E-16 89.3 3.0 80 139-230 81-165 (334)
217 PRK07395 L-aspartate oxidase; 99.1 4.9E-10 1.1E-14 95.6 10.5 161 2-166 9-197 (553)
218 COG1249 Lpd Pyruvate/2-oxoglut 99.1 2.9E-09 6.3E-14 87.9 14.6 104 2-172 173-276 (454)
219 TIGR01350 lipoamide_DH dihydro 99.1 4E-09 8.6E-14 88.8 15.8 103 2-171 170-272 (461)
220 PRK09077 L-aspartate oxidase; 99.1 1.3E-09 2.8E-14 93.0 12.9 163 2-167 8-208 (536)
221 PLN02464 glycerol-3-phosphate 99.1 1.3E-09 2.9E-14 94.2 13.0 63 103-167 232-297 (627)
222 PRK06134 putative FAD-binding 99.1 1.3E-09 2.8E-14 93.8 12.8 43 2-44 12-54 (581)
223 KOG2404 Fumarate reductase, fl 99.1 9.2E-10 2E-14 84.3 10.4 159 4-168 11-208 (477)
224 PRK08626 fumarate reductase fl 99.1 7.4E-10 1.6E-14 96.2 11.3 63 103-167 158-221 (657)
225 PRK05257 malate:quinone oxidor 99.1 2.1E-09 4.5E-14 90.4 13.1 65 103-169 183-249 (494)
226 PRK12835 3-ketosteroid-delta-1 99.1 1.4E-09 3E-14 93.5 12.3 41 2-42 11-51 (584)
227 TIGR01811 sdhA_Bsu succinate d 99.1 1.3E-09 2.9E-14 93.9 12.2 34 5-38 1-34 (603)
228 PRK07843 3-ketosteroid-delta-1 99.1 2.7E-09 5.9E-14 91.4 13.9 43 2-44 7-49 (557)
229 PRK05976 dihydrolipoamide dehy 99.1 6.3E-09 1.4E-13 87.8 15.6 104 2-171 180-284 (472)
230 COG0446 HcaD Uncharacterized N 99.1 9.6E-10 2.1E-14 91.2 10.6 101 114-230 64-169 (415)
231 PF06039 Mqo: Malate:quinone o 99.1 2.5E-09 5.4E-14 86.4 12.3 65 104-170 182-248 (488)
232 PRK12837 3-ketosteroid-delta-1 99.1 3E-09 6.4E-14 90.4 13.5 41 2-43 7-47 (513)
233 TIGR01373 soxB sarcosine oxida 99.1 4.2E-09 9.1E-14 87.2 13.8 58 103-167 183-241 (407)
234 PRK13977 myosin-cross-reactive 99.1 8E-09 1.7E-13 86.8 14.7 41 2-42 22-66 (576)
235 PRK09754 phenylpropionate diox 99.1 3.5E-09 7.7E-14 87.3 12.4 98 3-169 145-242 (396)
236 PRK06416 dihydrolipoamide dehy 99.0 6E-09 1.3E-13 87.7 13.9 104 2-171 172-275 (462)
237 PRK06327 dihydrolipoamide dehy 99.0 8.2E-09 1.8E-13 87.1 14.4 105 2-171 183-287 (475)
238 PRK07512 L-aspartate oxidase; 99.0 1.8E-09 3.9E-14 91.6 10.4 61 103-166 136-197 (513)
239 PRK12843 putative FAD-binding 99.0 3.7E-09 8.1E-14 91.0 12.3 43 2-44 16-58 (578)
240 PRK07818 dihydrolipoamide dehy 99.0 1.1E-08 2.4E-13 86.1 14.9 105 2-171 172-276 (466)
241 PRK07251 pyridine nucleotide-d 99.0 6.6E-09 1.4E-13 86.8 13.4 100 2-171 157-256 (438)
242 PRK06116 glutathione reductase 99.0 7.8E-09 1.7E-13 86.7 13.8 102 2-171 167-268 (450)
243 PRK05249 soluble pyridine nucl 99.0 7.7E-09 1.7E-13 87.1 13.7 100 2-170 175-274 (461)
244 PRK08255 salicylyl-CoA 5-hydro 99.0 4.7E-10 1E-14 99.3 6.1 138 3-169 1-144 (765)
245 PRK06912 acoL dihydrolipoamide 99.0 1.1E-08 2.4E-13 85.9 13.9 102 2-171 170-271 (458)
246 TIGR02061 aprA adenosine phosp 99.0 7.5E-09 1.6E-13 89.0 12.7 64 103-168 126-193 (614)
247 TIGR02053 MerA mercuric reduct 99.0 1.6E-08 3.4E-13 85.2 14.3 103 3-171 167-269 (463)
248 KOG2415 Electron transfer flav 99.0 3.9E-09 8.4E-14 83.7 9.6 155 3-165 77-255 (621)
249 KOG1298 Squalene monooxygenase 99.0 1.8E-09 3.8E-14 84.7 7.6 155 2-169 45-211 (509)
250 PRK06467 dihydrolipoamide dehy 99.0 1.5E-08 3.4E-13 85.2 13.8 104 2-171 174-277 (471)
251 PTZ00367 squalene epoxidase; P 99.0 1.4E-09 3.1E-14 92.6 7.7 34 2-35 33-66 (567)
252 TIGR01421 gluta_reduc_1 glutat 99.0 1.6E-08 3.4E-13 84.7 13.8 103 2-171 166-268 (450)
253 PRK06370 mercuric reductase; V 99.0 2.3E-08 5.1E-13 84.1 14.5 104 2-171 171-274 (463)
254 TIGR02485 CobZ_N-term precorri 99.0 7.4E-09 1.6E-13 86.4 11.4 61 102-167 122-184 (432)
255 TIGR01424 gluta_reduc_2 glutat 99.0 1.8E-08 3.9E-13 84.4 13.6 99 3-170 167-265 (446)
256 PRK06115 dihydrolipoamide dehy 99.0 2.6E-08 5.7E-13 83.8 14.6 104 2-170 174-278 (466)
257 PF04820 Trp_halogenase: Trypt 99.0 1.9E-08 4.1E-13 84.0 13.4 57 100-164 151-209 (454)
258 COG1232 HemY Protoporphyrinoge 99.0 1.1E-08 2.5E-13 83.8 11.4 40 3-42 1-42 (444)
259 PLN02507 glutathione reductase 98.9 2.5E-08 5.4E-13 84.4 13.8 101 2-171 203-303 (499)
260 COG1231 Monoamine oxidase [Ami 98.9 2.9E-08 6.4E-13 80.0 13.1 44 2-45 7-50 (450)
261 PRK07846 mycothione reductase; 98.9 2.5E-08 5.4E-13 83.5 12.9 100 2-171 166-265 (451)
262 COG1252 Ndh NADH dehydrogenase 98.9 2.3E-08 4.9E-13 80.9 12.1 134 4-210 157-304 (405)
263 KOG2614 Kynurenine 3-monooxyge 98.9 6.1E-09 1.3E-13 82.7 8.6 38 1-38 1-38 (420)
264 PRK07845 flavoprotein disulfid 98.9 3E-08 6.4E-13 83.5 13.4 100 3-171 178-277 (466)
265 COG1148 HdrA Heterodisulfide r 98.9 3.8E-09 8.2E-14 85.2 7.2 96 2-147 124-219 (622)
266 PRK13800 putative oxidoreducta 98.9 2.3E-08 5E-13 90.3 12.8 35 2-36 13-47 (897)
267 COG1233 Phytoene dehydrogenase 98.9 2.6E-09 5.5E-14 90.1 5.8 56 103-164 224-279 (487)
268 PTZ00058 glutathione reductase 98.9 6.3E-08 1.4E-12 82.7 14.0 102 2-170 237-338 (561)
269 TIGR01423 trypano_reduc trypan 98.9 5.6E-08 1.2E-12 81.9 13.4 102 2-171 187-291 (486)
270 COG2907 Predicted NAD/FAD-bind 98.9 2.3E-08 5.1E-13 77.5 10.0 42 2-44 8-49 (447)
271 TIGR03385 CoA_CoA_reduc CoA-di 98.9 5.7E-08 1.2E-12 81.0 12.9 97 3-169 138-234 (427)
272 PRK08010 pyridine nucleotide-d 98.9 6.6E-08 1.4E-12 81.0 13.2 98 3-170 159-256 (441)
273 PRK09564 coenzyme A disulfide 98.9 4.5E-08 9.8E-13 82.1 12.3 95 3-164 150-244 (444)
274 PRK05335 tRNA (uracil-5-)-meth 98.9 1.1E-08 2.5E-13 83.0 8.3 38 1-38 1-38 (436)
275 KOG0029 Amine oxidase [Seconda 98.8 4.6E-09 1E-13 87.9 5.9 43 2-44 15-57 (501)
276 TIGR03452 mycothione_red mycot 98.8 7.5E-08 1.6E-12 80.7 13.2 99 2-170 169-267 (452)
277 COG1053 SdhA Succinate dehydro 98.8 2E-08 4.3E-13 85.3 9.6 163 2-166 6-202 (562)
278 TIGR03862 flavo_PP4765 unchara 98.8 2E-08 4.3E-13 81.0 8.8 133 25-170 1-145 (376)
279 KOG1335 Dihydrolipoamide dehyd 98.8 6.1E-08 1.3E-12 76.2 10.9 105 2-170 211-316 (506)
280 PRK13512 coenzyme A disulfide 98.8 8.1E-08 1.8E-12 80.2 12.0 95 3-170 149-243 (438)
281 PRK06292 dihydrolipoamide dehy 98.8 1.8E-07 3.9E-12 78.8 14.1 103 2-171 169-271 (460)
282 TIGR02374 nitri_red_nirB nitri 98.8 7.1E-08 1.5E-12 85.9 12.0 100 3-170 141-240 (785)
283 PRK14694 putative mercuric red 98.8 2E-07 4.3E-12 78.6 13.6 99 2-171 178-276 (468)
284 COG2509 Uncharacterized FAD-de 98.8 1.7E-07 3.7E-12 75.5 12.2 58 103-166 173-230 (486)
285 PRK14727 putative mercuric red 98.8 2.1E-07 4.5E-12 78.7 13.5 99 2-171 188-286 (479)
286 PTZ00052 thioredoxin reductase 98.8 1.9E-07 4.1E-12 79.2 13.1 99 3-171 183-281 (499)
287 TIGR00137 gid_trmFO tRNA:m(5)U 98.8 4.8E-08 1E-12 79.9 9.1 37 3-39 1-37 (433)
288 PRK07208 hypothetical protein; 98.8 1.2E-08 2.6E-13 86.4 5.9 42 2-43 4-45 (479)
289 TIGR01438 TGR thioredoxin and 98.8 2.8E-07 6.1E-12 77.8 13.7 102 3-171 181-282 (484)
290 COG0446 HcaD Uncharacterized N 98.8 1.7E-07 3.6E-12 77.9 12.2 100 3-169 137-238 (415)
291 COG0445 GidA Flavin-dependent 98.8 2.9E-08 6.3E-13 81.5 7.4 148 2-166 4-158 (621)
292 PRK13748 putative mercuric red 98.7 2.4E-07 5.3E-12 80.0 13.2 99 2-171 270-368 (561)
293 PLN02546 glutathione reductase 98.7 2.4E-07 5.2E-12 79.2 12.9 102 2-171 252-353 (558)
294 PRK14989 nitrite reductase sub 98.7 1.9E-07 4.2E-12 83.4 12.7 101 3-170 146-247 (847)
295 TIGR00031 UDP-GALP_mutase UDP- 98.7 1.8E-08 4E-13 81.5 5.7 42 2-43 1-42 (377)
296 PRK11883 protoporphyrinogen ox 98.7 1.9E-08 4.1E-13 84.5 5.8 41 3-43 1-43 (451)
297 COG0029 NadB Aspartate oxidase 98.7 1.8E-07 3.9E-12 76.2 10.9 159 4-166 9-196 (518)
298 TIGR00562 proto_IX_ox protopor 98.7 2E-08 4.4E-13 84.6 5.8 43 2-44 2-48 (462)
299 PLN02268 probable polyamine ox 98.7 2.2E-08 4.8E-13 83.7 5.7 42 3-44 1-42 (435)
300 PTZ00318 NADH dehydrogenase-li 98.7 8.1E-07 1.8E-11 74.0 14.7 90 4-164 175-278 (424)
301 PRK07233 hypothetical protein; 98.7 2.8E-08 6.1E-13 83.1 5.5 40 4-43 1-40 (434)
302 PLN02576 protoporphyrinogen ox 98.7 3E-08 6.5E-13 84.3 5.6 43 2-44 12-55 (496)
303 PRK12416 protoporphyrinogen ox 98.7 3.5E-08 7.6E-13 83.2 5.9 43 2-44 1-49 (463)
304 KOG2844 Dimethylglycine dehydr 98.7 2.6E-08 5.6E-13 83.4 4.7 57 103-166 187-243 (856)
305 PF00070 Pyr_redox: Pyridine n 98.7 2E-08 4.3E-13 63.0 3.1 60 199-258 1-71 (80)
306 PTZ00153 lipoamide dehydrogena 98.6 7.4E-07 1.6E-11 77.4 13.2 105 3-171 313-430 (659)
307 COG3349 Uncharacterized conser 98.6 4.6E-08 1E-12 80.2 5.4 43 3-45 1-43 (485)
308 TIGR02733 desat_CrtD C-3',4' d 98.6 4.2E-08 9.2E-13 83.3 5.3 39 3-41 2-40 (492)
309 TIGR02730 carot_isom carotene 98.6 5.3E-08 1.1E-12 82.7 5.7 58 103-166 229-286 (493)
310 PF13434 K_oxygenase: L-lysine 98.6 3.2E-07 7E-12 73.7 9.2 45 117-163 293-338 (341)
311 COG0562 Glf UDP-galactopyranos 98.6 7.6E-08 1.6E-12 74.0 5.0 42 2-43 1-42 (374)
312 KOG0042 Glycerol-3-phosphate d 98.6 6.3E-08 1.4E-12 79.3 4.9 161 2-168 67-289 (680)
313 TIGR02734 crtI_fam phytoene de 98.6 6.1E-08 1.3E-12 82.5 5.0 56 103-164 219-274 (502)
314 PLN02568 polyamine oxidase 98.6 9.8E-08 2.1E-12 81.3 6.0 43 2-44 5-52 (539)
315 KOG2852 Possible oxidoreductas 98.6 1.4E-06 3E-11 66.2 10.9 39 2-40 10-54 (380)
316 PRK10262 thioredoxin reductase 98.6 2.2E-06 4.7E-11 68.8 12.9 102 3-170 147-250 (321)
317 TIGR03140 AhpF alkyl hydropero 98.5 2.3E-06 5E-11 73.0 12.6 98 3-170 353-452 (515)
318 TIGR02731 phytoene_desat phyto 98.5 1.3E-07 2.9E-12 79.5 5.0 40 4-43 1-40 (453)
319 KOG0685 Flavin-containing amin 98.5 2.6E-07 5.6E-12 74.8 6.0 42 3-44 22-64 (498)
320 PLN02676 polyamine oxidase 98.5 2.2E-07 4.8E-12 78.4 5.4 42 2-43 26-68 (487)
321 TIGR01292 TRX_reduct thioredox 98.5 3.8E-06 8.3E-11 66.6 12.0 93 3-164 142-236 (300)
322 TIGR01810 betA choline dehydro 98.4 2.8E-06 6E-11 72.9 11.5 68 107-176 198-265 (532)
323 TIGR02732 zeta_caro_desat caro 98.4 3.4E-07 7.4E-12 77.2 5.6 40 4-43 1-40 (474)
324 PLN02529 lysine-specific histo 98.4 4.3E-07 9.4E-12 79.4 5.7 43 2-44 160-202 (738)
325 PRK15317 alkyl hydroperoxide r 98.4 6.2E-06 1.3E-10 70.5 12.3 98 3-170 352-451 (517)
326 KOG1336 Monodehydroascorbate/f 98.4 5.8E-06 1.3E-10 67.2 11.1 105 3-174 214-319 (478)
327 PTZ00363 rab-GDP dissociation 98.4 4.5E-07 9.9E-12 75.2 4.6 42 2-43 4-45 (443)
328 KOG1346 Programmed cell death 98.4 1.2E-06 2.5E-11 70.0 6.5 104 115-229 269-383 (659)
329 PLN02328 lysine-specific histo 98.4 5.6E-07 1.2E-11 79.2 5.2 42 2-43 238-279 (808)
330 PLN02487 zeta-carotene desatur 98.4 7.1E-07 1.5E-11 76.3 5.7 41 2-42 75-115 (569)
331 COG3573 Predicted oxidoreducta 98.3 1.4E-05 3E-10 62.4 11.7 39 2-40 5-45 (552)
332 KOG2853 Possible oxidoreductas 98.3 8.2E-06 1.8E-10 63.7 10.1 36 2-37 86-125 (509)
333 TIGR03169 Nterm_to_SelD pyridi 98.3 1E-05 2.2E-10 66.2 11.4 90 3-164 146-241 (364)
334 PRK12770 putative glutamate sy 98.3 1.1E-05 2.5E-10 65.5 11.1 32 3-34 173-205 (352)
335 PLN02612 phytoene desaturase 98.3 1.2E-06 2.7E-11 75.4 5.5 41 2-42 93-133 (567)
336 TIGR01316 gltA glutamate synth 98.3 8.8E-05 1.9E-09 62.3 16.2 33 3-35 273-305 (449)
337 KOG3923 D-aspartate oxidase [A 98.3 3.5E-06 7.5E-11 64.3 6.8 48 102-168 150-197 (342)
338 PF00732 GMC_oxred_N: GMC oxid 98.2 1E-06 2.2E-11 69.9 4.0 71 104-176 194-268 (296)
339 KOG1276 Protoporphyrinogen oxi 98.2 1.9E-06 4.2E-11 69.0 5.3 42 2-43 11-54 (491)
340 TIGR02462 pyranose_ox pyranose 98.2 1.8E-06 3.9E-11 73.2 5.0 39 3-41 1-39 (544)
341 KOG2495 NADH-dehydrogenase (ub 98.2 4.3E-06 9.2E-11 67.1 6.7 100 4-170 220-333 (491)
342 PRK05329 anaerobic glycerol-3- 98.2 1.9E-06 4.1E-11 71.1 4.9 35 1-35 1-35 (422)
343 PLN03000 amine oxidase 98.2 2.4E-06 5.2E-11 75.5 5.3 43 2-44 184-226 (881)
344 PLN02976 amine oxidase 98.2 3.2E-06 6.9E-11 77.8 5.6 43 2-44 693-735 (1713)
345 KOG2311 NAD/FAD-utilizing prot 98.1 1.4E-05 3.1E-10 65.0 8.1 33 2-34 28-60 (679)
346 PRK12831 putative oxidoreducta 98.1 7.3E-05 1.6E-09 63.0 12.6 32 3-34 282-313 (464)
347 PRK11749 dihydropyrimidine deh 98.1 8E-05 1.7E-09 62.8 12.8 33 3-35 274-307 (457)
348 KOG2960 Protein involved in th 98.1 3.9E-06 8.5E-11 61.0 4.0 40 3-42 77-118 (328)
349 COG3075 GlpB Anaerobic glycero 98.1 5.1E-06 1.1E-10 64.4 4.7 36 1-36 1-36 (421)
350 TIGR03143 AhpF_homolog putativ 98.1 5.7E-05 1.2E-09 65.2 11.5 33 3-35 144-176 (555)
351 KOG4254 Phytoene desaturase [C 98.1 3.3E-05 7.2E-10 62.5 8.8 40 2-41 14-53 (561)
352 KOG3855 Monooxygenase involved 98.0 3.5E-05 7.6E-10 61.7 8.2 34 2-35 36-73 (481)
353 PF06100 Strep_67kDa_ant: Stre 98.0 0.00025 5.5E-09 58.7 13.3 40 3-42 3-46 (500)
354 PRK01438 murD UDP-N-acetylmura 98.0 4.4E-05 9.6E-10 64.8 8.9 33 2-34 16-48 (480)
355 PRK12810 gltD glutamate syntha 97.9 0.00024 5.2E-09 60.2 12.6 33 3-35 282-315 (471)
356 PRK02106 choline dehydrogenase 97.9 1.1E-05 2.3E-10 69.8 4.6 67 108-176 206-272 (560)
357 TIGR01372 soxA sarcosine oxida 97.9 0.00018 4E-09 66.2 12.5 95 3-170 318-413 (985)
358 PRK12778 putative bifunctional 97.9 0.00054 1.2E-08 61.5 15.0 33 3-35 571-604 (752)
359 TIGR01318 gltD_gamma_fam gluta 97.9 0.0012 2.6E-08 55.9 15.9 33 3-35 283-316 (467)
360 KOG3851 Sulfide:quinone oxidor 97.9 8.3E-05 1.8E-09 57.7 8.0 34 2-35 39-74 (446)
361 PRK12814 putative NADPH-depend 97.8 0.0016 3.5E-08 57.4 16.3 33 3-35 324-357 (652)
362 COG1206 Gid NAD(FAD)-utilizing 97.8 5E-05 1.1E-09 59.1 5.5 36 2-37 3-38 (439)
363 TIGR03378 glycerol3P_GlpB glyc 97.8 3.5E-05 7.7E-10 63.1 4.7 63 103-169 263-326 (419)
364 KOG0405 Pyridine nucleotide-di 97.8 0.00016 3.4E-09 56.9 7.9 102 2-171 189-290 (478)
365 COG2303 BetA Choline dehydroge 97.8 2.6E-05 5.6E-10 66.8 4.1 66 108-175 208-275 (542)
366 COG0492 TrxB Thioredoxin reduc 97.7 0.0009 1.9E-08 53.0 11.8 97 2-170 143-240 (305)
367 COG3486 IucD Lysine/ornithine 97.7 0.0024 5.2E-08 51.6 13.9 83 122-206 295-385 (436)
368 KOG1346 Programmed cell death 97.7 0.00018 3.8E-09 58.0 7.2 59 103-170 393-451 (659)
369 PRK12769 putative oxidoreducta 97.7 0.0058 1.3E-07 54.1 17.3 33 3-35 469-502 (654)
370 PRK12779 putative bifunctional 97.7 0.0013 2.8E-08 60.2 13.2 32 3-34 448-479 (944)
371 PLN02785 Protein HOTHEAD 97.6 8E-05 1.7E-09 64.4 4.6 34 2-36 55-88 (587)
372 PRK05675 sdhA succinate dehydr 97.6 0.00051 1.1E-08 59.5 9.5 64 102-167 125-190 (570)
373 PLN02172 flavin-containing mon 97.6 0.00066 1.4E-08 57.2 9.5 34 2-35 204-237 (461)
374 PRK12809 putative oxidoreducta 97.5 0.011 2.3E-07 52.3 16.3 33 3-35 452-485 (639)
375 COG1251 NirB NAD(P)H-nitrite r 97.4 0.00038 8.3E-09 60.0 6.5 100 3-170 146-245 (793)
376 PRK13984 putative oxidoreducta 97.4 0.0072 1.6E-07 53.1 14.6 29 3-31 419-453 (604)
377 PRK09853 putative selenate red 97.4 0.0044 9.6E-08 56.6 13.2 33 3-35 669-703 (1019)
378 KOG2665 Predicted FAD-dependen 97.4 0.00015 3.2E-09 56.3 2.8 37 2-38 48-86 (453)
379 TIGR01317 GOGAT_sm_gam glutama 97.3 0.038 8.1E-07 47.2 17.1 33 3-35 284-317 (485)
380 PRK12771 putative glutamate sy 97.3 0.018 4E-07 50.1 15.4 32 3-34 268-300 (564)
381 TIGR03315 Se_ygfK putative sel 97.3 0.015 3.2E-07 53.5 14.9 33 3-35 667-701 (1012)
382 PF01210 NAD_Gly3P_dh_N: NAD-d 97.3 0.00043 9.2E-09 49.4 4.1 32 4-35 1-32 (157)
383 PRK12775 putative trifunctiona 97.2 0.0086 1.9E-07 55.4 12.8 32 3-34 572-604 (1006)
384 KOG1238 Glucose dehydrogenase/ 97.2 0.0004 8.8E-09 59.1 4.0 36 2-37 57-93 (623)
385 COG1148 HdrA Heterodisulfide r 97.1 0.0011 2.3E-08 54.6 5.2 62 196-257 123-208 (622)
386 COG0569 TrkA K+ transport syst 97.1 0.00093 2E-08 50.6 4.5 35 3-37 1-35 (225)
387 PRK05329 anaerobic glycerol-3- 97.0 0.011 2.3E-07 49.3 10.7 60 103-166 259-318 (422)
388 TIGR03197 MnmC_Cterm tRNA U-34 97.0 0.0024 5.2E-08 52.7 6.9 59 103-169 135-193 (381)
389 PF02737 3HCDH_N: 3-hydroxyacy 97.0 0.0013 2.9E-08 47.9 4.7 32 4-35 1-32 (180)
390 TIGR02352 thiamin_ThiO glycine 97.0 0.0081 1.8E-07 48.5 9.7 60 103-169 137-196 (337)
391 TIGR03378 glycerol3P_GlpB glyc 96.9 0.004 8.6E-08 51.4 7.5 33 3-35 1-33 (419)
392 PF03721 UDPG_MGDP_dh_N: UDP-g 96.9 0.0012 2.6E-08 48.4 3.9 33 3-35 1-33 (185)
393 PF13450 NAD_binding_8: NAD(P) 96.9 0.0011 2.4E-08 39.8 3.1 29 202-230 1-29 (68)
394 PRK02705 murD UDP-N-acetylmura 96.9 0.0013 2.9E-08 55.6 4.6 34 4-37 2-35 (459)
395 PF13241 NAD_binding_7: Putati 96.9 0.0014 3E-08 43.1 3.6 36 195-230 5-40 (103)
396 PF01593 Amino_oxidase: Flavin 96.9 0.00097 2.1E-08 55.6 3.5 48 112-166 218-265 (450)
397 PRK08229 2-dehydropantoate 2-r 96.8 0.002 4.3E-08 52.3 5.0 35 1-35 1-35 (341)
398 PF00996 GDI: GDP dissociation 96.8 0.0019 4.2E-08 53.5 4.4 42 2-43 4-45 (438)
399 KOG4716 Thioredoxin reductase 96.7 0.0067 1.4E-07 47.9 6.7 99 3-164 199-298 (503)
400 PRK06129 3-hydroxyacyl-CoA deh 96.7 0.0024 5.3E-08 50.9 4.5 34 3-36 3-36 (308)
401 PF02558 ApbA: Ketopantoate re 96.7 0.0033 7.2E-08 44.4 4.7 30 5-34 1-30 (151)
402 PRK05708 2-dehydropantoate 2-r 96.7 0.0034 7.4E-08 50.0 5.2 35 1-35 1-35 (305)
403 PF13241 NAD_binding_7: Putati 96.7 0.0021 4.6E-08 42.2 3.3 33 2-34 7-39 (103)
404 TIGR01470 cysG_Nterm siroheme 96.6 0.0047 1E-07 46.1 5.0 34 2-35 9-42 (205)
405 TIGR01470 cysG_Nterm siroheme 96.6 0.002 4.3E-08 48.1 3.0 41 195-235 7-47 (205)
406 PF01262 AlaDh_PNT_C: Alanine 96.6 0.0052 1.1E-07 44.4 5.0 34 2-35 20-53 (168)
407 PRK06719 precorrin-2 dehydroge 96.5 0.0055 1.2E-07 43.6 4.9 33 2-34 13-45 (157)
408 PRK09260 3-hydroxybutyryl-CoA 96.5 0.0043 9.4E-08 49.0 4.6 33 3-35 2-34 (288)
409 PRK14106 murD UDP-N-acetylmura 96.5 0.005 1.1E-07 52.0 5.2 34 2-35 5-38 (450)
410 TIGR03377 glycerol3P_GlpA glyc 96.4 0.021 4.5E-07 49.2 8.7 64 103-168 128-192 (516)
411 PRK07819 3-hydroxybutyryl-CoA 96.4 0.0048 1E-07 48.6 4.4 34 3-36 6-39 (286)
412 PRK07530 3-hydroxybutyryl-CoA 96.4 0.0062 1.3E-07 48.3 5.1 33 3-35 5-37 (292)
413 PRK08293 3-hydroxybutyryl-CoA 96.4 0.0054 1.2E-07 48.5 4.7 33 3-35 4-36 (287)
414 PTZ00188 adrenodoxin reductase 96.4 0.007 1.5E-07 50.9 5.3 35 196-230 38-73 (506)
415 PF03446 NAD_binding_2: NAD bi 96.4 0.0072 1.6E-07 43.4 4.8 34 2-35 1-34 (163)
416 PRK06718 precorrin-2 dehydroge 96.4 0.0075 1.6E-07 44.9 5.0 33 2-34 10-42 (202)
417 PF01488 Shikimate_DH: Shikima 96.4 0.01 2.2E-07 41.1 5.4 34 2-35 12-46 (135)
418 PRK06249 2-dehydropantoate 2-r 96.4 0.0078 1.7E-07 48.2 5.3 34 2-35 5-38 (313)
419 PRK07066 3-hydroxybutyryl-CoA 96.4 0.006 1.3E-07 48.7 4.6 33 3-35 8-40 (321)
420 PRK04148 hypothetical protein; 96.3 0.0048 1E-07 42.2 3.5 33 3-36 18-50 (134)
421 PRK06035 3-hydroxyacyl-CoA deh 96.3 0.0065 1.4E-07 48.1 4.4 33 3-35 4-36 (291)
422 PRK05335 tRNA (uracil-5-)-meth 96.3 0.0047 1E-07 51.0 3.6 33 198-230 3-35 (436)
423 PRK06719 precorrin-2 dehydroge 96.3 0.004 8.7E-08 44.3 2.8 40 194-233 10-49 (157)
424 PRK05808 3-hydroxybutyryl-CoA 96.2 0.0071 1.5E-07 47.7 4.5 33 3-35 4-36 (282)
425 PF00899 ThiF: ThiF family; I 96.2 0.011 2.3E-07 41.0 4.8 33 2-34 2-35 (135)
426 TIGR00137 gid_trmFO tRNA:m(5)U 96.2 0.005 1.1E-07 51.0 3.4 32 199-230 2-33 (433)
427 PRK11064 wecC UDP-N-acetyl-D-m 96.1 0.0078 1.7E-07 50.1 4.4 35 2-36 3-37 (415)
428 PRK00094 gpsA NAD(P)H-dependen 96.1 0.01 2.2E-07 47.8 5.0 34 2-35 1-34 (325)
429 PRK09424 pntA NAD(P) transhydr 96.1 0.0089 1.9E-07 50.7 4.6 33 3-35 166-198 (509)
430 PRK06522 2-dehydropantoate 2-r 96.1 0.01 2.2E-07 47.3 4.7 32 4-35 2-33 (304)
431 TIGR00518 alaDH alanine dehydr 96.1 0.011 2.4E-07 48.4 4.9 33 3-35 168-200 (370)
432 PRK12921 2-dehydropantoate 2-r 96.1 0.01 2.2E-07 47.3 4.7 30 4-33 2-31 (305)
433 PRK06718 precorrin-2 dehydroge 96.1 0.0054 1.2E-07 45.7 2.8 40 194-233 7-46 (202)
434 TIGR02354 thiF_fam2 thiamine b 96.0 0.013 2.8E-07 43.6 4.7 33 2-34 21-54 (200)
435 PRK06223 malate dehydrogenase; 96.0 0.014 3.1E-07 46.5 5.3 35 2-36 2-37 (307)
436 PF00056 Ldh_1_N: lactate/mala 96.0 0.018 3.9E-07 40.2 5.1 33 3-35 1-36 (141)
437 cd05292 LDH_2 A subgroup of L- 96.0 0.013 2.7E-07 46.8 4.9 33 4-36 2-36 (308)
438 PF02254 TrkA_N: TrkA-N domain 96.0 0.015 3.3E-07 38.9 4.7 31 5-35 1-31 (116)
439 cd00401 AdoHcyase S-adenosyl-L 96.0 0.012 2.7E-07 48.5 4.9 33 3-35 203-235 (413)
440 PRK06130 3-hydroxybutyryl-CoA 96.0 0.013 2.8E-07 46.9 4.8 34 2-35 4-37 (311)
441 cd01080 NAD_bind_m-THF_DH_Cycl 95.9 0.016 3.5E-07 41.6 4.7 33 2-34 44-77 (168)
442 KOG0029 Amine oxidase [Seconda 95.9 0.011 2.3E-07 50.4 4.3 35 196-230 14-48 (501)
443 PLN02852 ferredoxin-NADP+ redu 95.9 0.0091 2E-07 50.6 3.9 35 196-230 25-61 (491)
444 COG3634 AhpF Alkyl hydroperoxi 95.9 0.12 2.6E-06 41.3 9.6 105 2-176 354-460 (520)
445 COG0771 MurD UDP-N-acetylmuram 95.9 0.012 2.7E-07 48.9 4.3 36 2-37 7-42 (448)
446 COG1004 Ugd Predicted UDP-gluc 95.8 0.013 2.9E-07 47.3 4.2 33 3-35 1-33 (414)
447 COG1748 LYS9 Saccharopine dehy 95.8 0.015 3.4E-07 47.3 4.6 34 2-35 1-35 (389)
448 PRK14618 NAD(P)H-dependent gly 95.8 0.017 3.7E-07 46.6 4.9 34 2-35 4-37 (328)
449 PF00743 FMO-like: Flavin-bind 95.8 0.0099 2.1E-07 51.1 3.6 33 198-230 2-34 (531)
450 PRK05562 precorrin-2 dehydroge 95.8 0.0086 1.9E-07 45.0 2.8 42 195-236 23-64 (223)
451 PLN02545 3-hydroxybutyryl-CoA 95.8 0.019 4E-07 45.6 4.9 33 3-35 5-37 (295)
452 PRK07236 hypothetical protein; 95.8 0.012 2.7E-07 48.6 4.0 34 197-230 6-39 (386)
453 PRK14620 NAD(P)H-dependent gly 95.8 0.018 4E-07 46.4 4.9 32 4-35 2-33 (326)
454 PRK11559 garR tartronate semia 95.7 0.017 3.7E-07 45.9 4.5 35 1-35 1-35 (296)
455 TIGR03026 NDP-sugDHase nucleot 95.7 0.015 3.2E-07 48.5 4.3 33 4-36 2-34 (411)
456 PRK07531 bifunctional 3-hydrox 95.7 0.018 3.8E-07 49.2 4.7 33 3-35 5-37 (495)
457 PRK14619 NAD(P)H-dependent gly 95.7 0.023 4.9E-07 45.4 5.1 34 2-35 4-37 (308)
458 PRK15116 sulfur acceptor prote 95.7 0.022 4.8E-07 44.2 4.9 34 2-35 30-64 (268)
459 PRK01710 murD UDP-N-acetylmura 95.7 0.019 4E-07 48.7 4.8 33 3-35 15-47 (458)
460 PRK12409 D-amino acid dehydrog 95.7 0.014 2.9E-07 48.7 3.9 33 198-230 2-34 (410)
461 PF13478 XdhC_C: XdhC Rossmann 95.6 0.017 3.7E-07 40.0 3.7 32 5-36 1-32 (136)
462 PLN02353 probable UDP-glucose 95.6 0.019 4E-07 48.6 4.6 34 2-35 1-36 (473)
463 TIGR01816 sdhA_forward succina 95.6 0.092 2E-06 45.8 9.0 64 102-167 118-182 (565)
464 PF07992 Pyr_redox_2: Pyridine 95.6 0.013 2.8E-07 43.4 3.4 32 199-230 1-32 (201)
465 PF01494 FAD_binding_3: FAD bi 95.6 0.015 3.2E-07 47.2 4.0 32 199-230 3-34 (356)
466 TIGR01763 MalateDH_bact malate 95.6 0.026 5.6E-07 45.0 5.2 35 3-37 2-37 (305)
467 PRK11880 pyrroline-5-carboxyla 95.6 0.02 4.2E-07 44.8 4.4 35 1-35 1-38 (267)
468 PTZ00082 L-lactate dehydrogena 95.6 0.028 6.1E-07 45.1 5.3 34 3-36 7-41 (321)
469 cd05311 NAD_bind_2_malic_enz N 95.6 0.027 5.8E-07 42.8 4.9 33 3-35 26-61 (226)
470 cd01075 NAD_bind_Leu_Phe_Val_D 95.6 0.03 6.5E-07 41.7 5.0 33 3-35 29-61 (200)
471 PRK12475 thiamine/molybdopteri 95.5 0.025 5.3E-07 45.7 4.8 34 2-35 24-58 (338)
472 KOG1399 Flavin-containing mono 95.5 0.015 3.2E-07 48.6 3.5 34 197-230 6-39 (448)
473 PRK04690 murD UDP-N-acetylmura 95.5 0.023 5E-07 48.2 4.8 33 2-34 8-40 (468)
474 PRK08306 dipicolinate synthase 95.5 0.03 6.6E-07 44.4 5.1 34 2-35 152-185 (296)
475 PRK03369 murD UDP-N-acetylmura 95.4 0.027 5.8E-07 48.1 4.9 32 3-34 13-44 (488)
476 PRK12549 shikimate 5-dehydroge 95.4 0.028 6.1E-07 44.3 4.7 33 3-35 128-161 (284)
477 PRK08163 salicylate hydroxylas 95.4 0.02 4.4E-07 47.4 4.0 34 197-230 4-37 (396)
478 cd01483 E1_enzyme_family Super 95.4 0.033 7.1E-07 39.0 4.5 32 4-35 1-33 (143)
479 TIGR00936 ahcY adenosylhomocys 95.4 0.03 6.5E-07 46.2 4.8 33 3-35 196-228 (406)
480 cd05191 NAD_bind_amino_acid_DH 95.3 0.048 1E-06 34.4 4.8 32 2-33 23-55 (86)
481 COG1635 THI4 Ribulose 1,5-bisp 95.3 0.024 5.2E-07 42.2 3.7 37 194-230 27-63 (262)
482 TIGR02356 adenyl_thiF thiazole 95.3 0.035 7.6E-07 41.4 4.7 33 2-34 21-54 (202)
483 PRK04308 murD UDP-N-acetylmura 95.3 0.037 7.9E-07 46.8 5.4 35 2-36 5-39 (445)
484 PRK05690 molybdopterin biosynt 95.3 0.037 7.9E-07 42.6 4.9 33 2-34 32-65 (245)
485 TIGR02355 moeB molybdopterin s 95.3 0.035 7.6E-07 42.6 4.8 34 2-35 24-58 (240)
486 cd05291 HicDH_like L-2-hydroxy 95.3 0.035 7.6E-07 44.3 5.0 35 3-37 1-37 (306)
487 PRK06567 putative bifunctional 95.3 0.025 5.3E-07 51.6 4.3 36 195-230 381-416 (1028)
488 PRK08644 thiamine biosynthesis 95.3 0.039 8.4E-07 41.5 4.8 33 2-34 28-61 (212)
489 PRK06847 hypothetical protein; 95.3 0.023 5.1E-07 46.7 4.0 34 197-230 4-37 (375)
490 cd00757 ThiF_MoeB_HesA_family 95.2 0.037 8E-07 42.1 4.7 33 2-34 21-54 (228)
491 PRK00066 ldh L-lactate dehydro 95.2 0.043 9.3E-07 43.9 5.3 34 3-36 7-42 (315)
492 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.2 0.028 6E-07 48.0 4.4 34 3-36 6-39 (503)
493 PRK08017 oxidoreductase; Provi 95.2 0.041 8.9E-07 42.5 5.1 35 1-35 1-36 (256)
494 PRK07688 thiamine/molybdopteri 95.2 0.038 8.2E-07 44.7 4.9 33 2-34 24-57 (339)
495 TIGR02730 carot_isom carotene 95.2 0.084 1.8E-06 45.2 7.3 41 3-43 1-41 (493)
496 TIGR00561 pntA NAD(P) transhyd 95.2 0.038 8.3E-07 46.9 5.0 33 3-35 165-197 (511)
497 PRK05868 hypothetical protein; 95.2 0.022 4.8E-07 46.8 3.6 33 198-230 2-34 (372)
498 PRK07417 arogenate dehydrogena 95.2 0.035 7.5E-07 43.7 4.5 32 4-35 2-33 (279)
499 PRK15461 NADH-dependent gamma- 95.2 0.033 7.2E-07 44.2 4.5 33 3-35 2-34 (296)
500 PRK02472 murD UDP-N-acetylmura 95.2 0.036 7.8E-07 46.8 4.9 33 3-35 6-38 (447)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.3e-40 Score=274.16 Aligned_cols=252 Identities=58% Similarity=1.024 Sum_probs=210.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||||++||++|.+|.+.|++++|||+++.+||.|.+.+....++.+..+......+..|..+..+.+...+.|.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 47999999999999999999999999999999999999999876555444455444445567789999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
++|+.........+...||++.++.+||+++++++++...++++++|+++++.+ +.|.|.+.++.+......||+||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCceEEEEcCEEEEe
Confidence 999865422122345789999999999999999999998899999999999875 7899998864433345789999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcccccCC-CC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ-PG 240 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~-~~ 240 (259)
||+++.|++|.++|.+.|.|..+|+..|..+..+.+++|+|||+|.||+|+|.+|.+.+++|++++|++.....+++ ..
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~ 248 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVP 248 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCC
Confidence 99999999999999999999999999999998899999999999999999999999999999999998744333333 23
Q ss_pred CCCceEeeeeeEEe
Q 024975 241 YDNMWLHSMVRTKK 254 (259)
Q Consensus 241 ~~~~~~~~~v~~~~ 254 (259)
..+++.++.|..+.
T Consensus 249 ~~~v~~~~~I~~~~ 262 (461)
T PLN02172 249 QNNLWMHSEIDTAH 262 (461)
T ss_pred CCceEECCccccee
Confidence 34666666676554
No 2
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=1.2e-37 Score=259.74 Aligned_cols=209 Identities=41% Similarity=0.777 Sum_probs=172.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++|+|||||++||++|..|.+.|+++++||+++.+||.|.+..... .-.+..|+.+..+.+...+.|++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-----------~g~~~~y~sl~~n~sk~~~~fsd 70 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-----------DGRSSVYDSLHTNTSKEMMAFSD 70 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-----------CSEGGGSTT-B-SS-GGGSCCTT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-----------CCccccccceEEeeCchHhcCCC
Confidence 6899999999999999999999999999999999999998753110 01345799999999999999999
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC----CcEEEEEEecCCceEEEEeCEE
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~----~~~~v~~~~g~~~~~~~~ad~V 158 (259)
+|+.. +.+.||++.++.+||+.+++++++..+++++++|+++++.++ +.|.|++++ ++......||+|
T Consensus 71 fp~p~-------~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-~g~~~~~~fD~V 142 (531)
T PF00743_consen 71 FPFPE-------DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-DGKEETEEFDAV 142 (531)
T ss_dssp S-HCC-------CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-TTEEEEEEECEE
T ss_pred cCCCC-------CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-CCeEEEEEeCeE
Confidence 99854 356799999999999999999999999999999999998653 469998764 344556789999
Q ss_pred EEccCCCCCCccCC--CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 159 VVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 159 IlAtG~~s~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
|+|||+++.|++|. +||++.|.|.++|+..|..+..+.+|+|+|||+|.||+|+|.+|++.+++|++..|++
T Consensus 143 vvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 143 VVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp EEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred EEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 99999999999996 9999999999999999999999999999999999999999999999999999999998
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-36 Score=245.86 Aligned_cols=211 Identities=50% Similarity=0.938 Sum_probs=188.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
|+.+++||||||+||++|..|.+.|+++++|||.+.+||.|.+..... ..++..|.++..+.+.+.+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-----------~~~ss~Y~~l~tn~pKe~~~~ 73 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-----------VVHSSVYKSLRTNLPKEMMGY 73 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-----------ccccchhhhhhccCChhhhcC
Confidence 368999999999999999999999999999999999999999864322 235567999999999999999
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl 160 (259)
+++|+... ....||++.++.+||+++++++++...+.++++|..+....++.|.|.+.+..+......||.|++
T Consensus 74 ~dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvV 147 (448)
T KOG1399|consen 74 SDFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVV 147 (448)
T ss_pred CCCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEE
Confidence 99999764 566779999999999999999999888999999999988753589999988654346788999999
Q ss_pred ccCCCCCCccCCCCC--CCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975 161 CNGHFSVPRLAQVPG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (259)
Q Consensus 161 AtG~~s~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r 228 (259)
|||++..|++|.++| .+.|.|..+|+..|..+..+.+++|+|||.|.||+|++.+++..+.+|++..+
T Consensus 148 ctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 148 CTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred cccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence 999986699999998 66999999999999999999999999999999999999999999989998876
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=243.06 Aligned_cols=199 Identities=32% Similarity=0.589 Sum_probs=178.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
.+||+|||||++||++|++|.++|.+ ++||||++.+||+|.++ .|+.+..+.+...++|
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~--------------------ry~~l~~~~p~~~~~~ 67 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN--------------------RYPGLRLDSPKWLLGF 67 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc--------------------cCCceEECCchheecc
Confidence 57999999999999999999999998 99999999999999874 6888888888888887
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEE
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
+.+|+. +...|+....+..|+.+.++++++...+.+++.|..+..+++ +.|.|+++++.... +++|+||
T Consensus 68 ~~~p~~--------~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~--~~a~~vV 137 (443)
T COG2072 68 PFLPFR--------WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGE--LTADFVV 137 (443)
T ss_pred CCCccC--------CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeee--EecCEEE
Confidence 777764 345666667788999999999988888888888888887664 58999999876221 7799999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+|||+++.|++|.++|.+.|.+..+|+..+.+...+.+|+|+|||+|+||+|++.+|.+.+.+||+++|++
T Consensus 138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=5e-34 Score=213.63 Aligned_cols=198 Identities=32% Similarity=0.559 Sum_probs=135.3
Q ss_pred EEECCChHHHHHHHHHHHcCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCCC
Q 024975 6 AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYP 84 (259)
Q Consensus 6 ~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (259)
+||||||+||++|.+|.++|.+ ++|||+++.+||.|......... ..+ ..+. ..+.+.++.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~---~~~-------~~~~--------~~~~~~~~~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRL---HSP-------SFFS--------SDFGLPDFE 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT----BSS-------SCCT--------GGSS--CCC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCcc---ccC-------cccc--------ccccCCccc
Confidence 7999999999999999999998 99999999999999853211100 000 0000 000000000
Q ss_pred CCccCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccC
Q 024975 85 FVARNY-EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (259)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG 163 (259)
...... ........++.+.++.+|+++++++++++ ++++++|+++.+.+ +.|.|+++++. .++||+||+|||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~-~~w~v~~~~~~----~~~a~~VVlAtG 135 (203)
T PF13738_consen 63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG-DGWTVTTRDGR----TIRADRVVLATG 135 (203)
T ss_dssp HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET-TTEEEEETTS-----EEEEEEEEE---
T ss_pred ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec-cEEEEEEEecc----eeeeeeEEEeee
Confidence 000000 00012345678899999999999999999 99999999999997 66999998863 789999999999
Q ss_pred CCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 164 HFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 164 ~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
.++.|+.|.+++ ..+ ...+|+..+.....+++++|+|||+|.||+|++..|.+.+.+|++++|++
T Consensus 136 ~~~~p~~p~~~g-~~~-~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 136 HYSHPRIPDIPG-SAF-RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SSCSB---S-TT-GGC-SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred ccCCCCcccccc-ccc-cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 988999999999 222 26778888888888889999999999999999999999999999999997
No 6
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-28 Score=190.91 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=155.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
++|||+||||||+||+||.++.+++++ ++|+|+ ..+||...... +...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~------------------------------~ven 50 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT------------------------------DVEN 50 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce------------------------------eecC
Confidence 469999999999999999999999998 666555 55664444321 0001
Q ss_pred ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
++.++. -.+..++.+.+.+.+..++++ +.. ..|.+++... +.|.|.+.++ .++++.||
T Consensus 51 ypg~~~-------------~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~-~~F~v~t~~~-----~~~ak~vI 108 (305)
T COG0492 51 YPGFPG-------------GILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEG-GPFKVKTDKG-----TYEAKAVI 108 (305)
T ss_pred CCCCcc-------------CCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecC-ceEEEEECCC-----eEEEeEEE
Confidence 111111 012378888888888888888 555 6788887764 3788888875 49999999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----Ccccc
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----ADETH 235 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----~~~~~ 235 (259)
+||| ..++.|.+|+...|.+...+.+..++. .+.+++|+|+|+|.||+|.|..|.+.+++||+++|++ .+.+.
T Consensus 109 iAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~ 185 (305)
T COG0492 109 IATG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILV 185 (305)
T ss_pred ECcC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHH
Confidence 9999 778888888877899999999888888 7888999999999999999999999999999999999 45677
Q ss_pred cCCCCC--CCceEeeeeeEEeec
Q 024975 236 EKQPGY--DNMWLHSMVRTKKCS 256 (259)
Q Consensus 236 ~~~~~~--~~~~~~~~v~~~~~~ 256 (259)
+++... ..+.+++.|+++.++
T Consensus 186 ~~l~~~~~i~~~~~~~i~ei~G~ 208 (305)
T COG0492 186 ERLKKNVKIEVLTNTVVKEILGD 208 (305)
T ss_pred HHHHhcCCeEEEeCCceeEEecC
Confidence 777665 444456888888875
No 7
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.95 E-value=1.6e-26 Score=183.29 Aligned_cols=199 Identities=24% Similarity=0.333 Sum_probs=146.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
|||+|||||++|+++|..|.+.|.+|+|+|+.+ +||.+..... ...++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~------------------------------~~~~~~ 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE------------------------------VENYPG 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc------------------------------ccccCC
Confidence 699999999999999999999999999999976 6776654200 000000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
++ ......++..++.+.+.+++++ +++ ++|++++..+ +.|.+.+.++. .+.+|+||+||
T Consensus 50 ~~-------------~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~-~~~~v~~~~~~----~~~~d~liiAt 108 (300)
T TIGR01292 50 FP-------------EGISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSD-RPFKVKTGDGK----EYTAKAVIIAT 108 (300)
T ss_pred CC-------------CCCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecC-CeeEEEeCCCC----EEEeCEEEECC
Confidence 10 0112267888999999889988 777 8999998865 67888876644 79999999999
Q ss_pred CCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccCC
Q 024975 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQ 238 (259)
Q Consensus 163 G~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~~ 238 (259)
| +.++.|.+||...+.+...+...........+++++|+|+|.+|+|++..|.+.+.+|++++|++. +.+.+.+
T Consensus 109 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l 186 (300)
T TIGR01292 109 G--ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRL 186 (300)
T ss_pred C--CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHH
Confidence 9 678888888876665554444333333445678999999999999999999999999999999882 3334444
Q ss_pred CCCCCceE--eeeeeEEee
Q 024975 239 PGYDNMWL--HSMVRTKKC 255 (259)
Q Consensus 239 ~~~~~~~~--~~~v~~~~~ 255 (259)
.+..++.+ ++.+++++.
T Consensus 187 ~~~~gv~~~~~~~v~~i~~ 205 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVG 205 (300)
T ss_pred HhCCCeEEEeccEEEEEEc
Confidence 43335544 466766654
No 8
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.94 E-value=1.2e-25 Score=189.74 Aligned_cols=200 Identities=19% Similarity=0.189 Sum_probs=151.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.|||+||||||+|+++|.+|++.|++++|+++. +||.|...... .
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~---------------------------------~ 255 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGI---------------------------------E 255 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcc---------------------------------c
Confidence 479999999999999999999999999999874 88887532100 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.++ ...+....++.+++.+.+++++++ ++.+++|+++...+ +.|.+.+.++. .+.||.||+|
T Consensus 256 ~~~-----------~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~-~~~~V~~~~g~----~i~a~~vViA 317 (517)
T PRK15317 256 NFI-----------SVPETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAA-GLIEVELANGA----VLKAKTVILA 317 (517)
T ss_pred ccC-----------CCCCCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEcCEEEEC
Confidence 000 011233478999999999999998 88899999998865 67888887654 7999999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~ 237 (259)
|| +.++.|.+||...|.+...+..........++++|+|+|+|++|+|+|..|...+.+|+++.|.+. ..+.+.
T Consensus 318 tG--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~ 395 (517)
T PRK15317 318 TG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDK 395 (517)
T ss_pred CC--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHH
Confidence 99 567888889877776666655544444445789999999999999999999999999999999873 223334
Q ss_pred CCCC--CCceEeeeeeEEeec
Q 024975 238 QPGY--DNMWLHSMVRTKKCS 256 (259)
Q Consensus 238 ~~~~--~~~~~~~~v~~~~~~ 256 (259)
+... ..++.++.++++.+.
T Consensus 396 l~~~~gI~i~~~~~v~~i~~~ 416 (517)
T PRK15317 396 LRSLPNVTIITNAQTTEVTGD 416 (517)
T ss_pred HhcCCCcEEEECcEEEEEEcC
Confidence 4332 344445667766554
No 9
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.94 E-value=3e-25 Score=188.35 Aligned_cols=198 Identities=23% Similarity=0.296 Sum_probs=145.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+|||+||||||+|+++|..|+++|++|+|+|+. .+||.+...... .
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i---------------------------------~ 49 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEV---------------------------------V 49 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecccc---------------------------------c
Confidence 589999999999999999999999999999995 578877642100 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.++ ........++..++.+.+.+++++ + ..++|+++...+ +.+.+.+.++ .+.+++||+|
T Consensus 50 ~~p-----------g~~~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~-~~~~V~~~~g-----~~~a~~lVlA 109 (555)
T TIGR03143 50 NYP-----------GILNTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDG-DIKTIKTARG-----DYKTLAVLIA 109 (555)
T ss_pred cCC-----------CCcCCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecC-CEEEEEecCC-----EEEEeEEEEC
Confidence 011 001123367888888888888888 5 467888888754 5567776542 5889999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~ 237 (259)
|| +.++.|.++|...+.+...+.+.........+++++|||+|++|+|+|..|.+.+.+|++++|.+. ..+.++
T Consensus 110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~ 187 (555)
T TIGR03143 110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK 187 (555)
T ss_pred CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence 99 678889999876555555544444444445689999999999999999999999999999999883 223334
Q ss_pred CCCC--CCceEeeeeeEEee
Q 024975 238 QPGY--DNMWLHSMVRTKKC 255 (259)
Q Consensus 238 ~~~~--~~~~~~~~v~~~~~ 255 (259)
++.. ..+..++.|+++.+
T Consensus 188 ~~~~~gV~i~~~~~V~~i~~ 207 (555)
T TIGR03143 188 VKNHPKIEVKFNTELKEATG 207 (555)
T ss_pred HHhCCCcEEEeCCEEEEEEc
Confidence 4333 34444677777764
No 10
>PRK10262 thioredoxin reductase; Provisional
Probab=99.94 E-value=5.9e-25 Score=175.55 Aligned_cols=199 Identities=18% Similarity=0.262 Sum_probs=143.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+||+||||||+||++|..|.++|.++++||+. ..||.+..... +.
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~---------------------------------~~ 51 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------------------------VE 51 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce---------------------------------EC
Confidence 489999999999999999999999999999964 57776654210 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
++|.. .......++.+++.+.+..++.+ +..+ +|+.++... +.|.+..+. ..+.||+||+|
T Consensus 52 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~-~~~~v~~~~-----~~~~~d~vilA 112 (321)
T PRK10262 52 NWPGD----------PNDLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQN-RPFRLTGDS-----GEYTCDALIIA 112 (321)
T ss_pred CCCCC----------CCCCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecC-CeEEEEecC-----CEEEECEEEEC
Confidence 11110 11122367788888888888776 6554 677787665 677776543 25899999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cc----
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DE---- 233 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~---- 233 (259)
|| +.++.|.+||...+.+...+.+.........+++++|+|+|.+|+|+|..|.+.+.+|++++|++. +.
T Consensus 113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~ 190 (321)
T PRK10262 113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR 190 (321)
T ss_pred CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence 99 678889999977666666666655555556789999999999999999999999999999999872 11
Q ss_pred cccCCCCCCCceE--eeeeeEEeec
Q 024975 234 THEKQPGYDNMWL--HSMVRTKKCS 256 (259)
Q Consensus 234 ~~~~~~~~~~~~~--~~~v~~~~~~ 256 (259)
+.+.+ +..++.+ ++.|+++.+.
T Consensus 191 ~~~~l-~~~gV~i~~~~~v~~v~~~ 214 (321)
T PRK10262 191 LMDKV-ENGNIILHTNRTLEEVTGD 214 (321)
T ss_pred HHhhc-cCCCeEEEeCCEEEEEEcC
Confidence 22222 2334444 4667777654
No 11
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.94 E-value=6.3e-25 Score=185.12 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=144.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
++||+||||||+|+++|.+|++.|.+|+|+|+ .+||.+..... + ..+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~-------------------~-----------~~~~ 259 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG-------------------I-----------ENLI 259 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC-------------------c-----------cccc
Confidence 48999999999999999999999999999985 47776653100 0 0000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
..+ +....++...+.+.+.+.+++ ++.+++|+++...+ +.+.+.++++. .+.||+||+|
T Consensus 260 ~~~--------------~~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~-~~~~v~~~~g~----~i~~d~lIlA 318 (515)
T TIGR03140 260 SVP--------------YTTGSQLAANLEEHIKQYPID--LMENQRAKKIETED-GLIVVTLESGE----VLKAKSVIVA 318 (515)
T ss_pred ccC--------------CCCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecC-CeEEEEECCCC----EEEeCEEEEC
Confidence 011 122377888888888888998 88999999998765 66888876654 7999999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCc----ccccC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK 237 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~----~~~~~ 237 (259)
|| +.++.|.+||...+.+...+...........+++|+|+|+|++|+|+|..|.+.+.+|+++.+.+.. .+.+.
T Consensus 319 tG--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~ 396 (515)
T TIGR03140 319 TG--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDK 396 (515)
T ss_pred CC--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHH
Confidence 99 5678888888655544444443333333346789999999999999999999999999999988722 22333
Q ss_pred CCC--CCCceEeeeeeEEeec
Q 024975 238 QPG--YDNMWLHSMVRTKKCS 256 (259)
Q Consensus 238 ~~~--~~~~~~~~~v~~~~~~ 256 (259)
+.. ..++..++.|+++++.
T Consensus 397 l~~~~gV~i~~~~~v~~i~~~ 417 (515)
T TIGR03140 397 LKSLPNVDILTSAQTTEIVGD 417 (515)
T ss_pred HhcCCCCEEEECCeeEEEEcC
Confidence 432 2344445666666543
No 12
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.93 E-value=1.9e-25 Score=182.18 Aligned_cols=226 Identities=22% Similarity=0.261 Sum_probs=145.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccccc-ccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (259)
+||++|||+||+|..+|.++++.|.+++++|+...+||+|... +|.|++.++.+... ..+...........
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~--------GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~ 75 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV--------GCIPSKALLHAAEVIEEARHAAKEYGISA 75 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee--------CccccHHHHHHHHHHHHHhhcccccceec
Confidence 5999999999999999999999999999999987899999887 99999888776543 33332222111111
Q ss_pred cC--CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975 81 QA--YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V 158 (259)
.. +.|.... .+... ....+...+..+.++.+++ +..+. ..- .+.+...|... + ...++++++
T Consensus 76 ~~~~id~~~~~----~~k~~--v~~~~~~~~~~l~~~~~V~--vi~G~-a~f---~~~~~v~V~~~-~---~~~~~a~~i 139 (454)
T COG1249 76 EVPKIDFEKLL----ARKDK--VVRLLTGGVEGLLKKNGVD--VIRGE-ARF---VDPHTVEVTGE-D---KETITADNI 139 (454)
T ss_pred CCCCcCHHHHH----HHHHH--HHHHHhhhHHHHHhhCCCE--EEEEE-EEE---CCCCEEEEcCC-C---ceEEEeCEE
Confidence 11 1110000 00000 0023334555566566777 55442 111 11133334333 1 258999999
Q ss_pred EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------Cc
Q 024975 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------AD 232 (259)
Q Consensus 159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~ 232 (259)
|+||| |.|..|+.++++... ...+....... .-+++++|||+|+.|+|+|..+.++|.+||+++|.+ ++
T Consensus 140 iIATG--S~p~~~~~~~~~~~~--~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ 214 (454)
T COG1249 140 IIATG--SRPRIPPGPGIDGAR--ILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDP 214 (454)
T ss_pred EEcCC--CCCcCCCCCCCCCCe--EEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCH
Confidence 99999 899999988877521 23333323333 345899999999999999999999999999999999 44
Q ss_pred ccccCC---CCCCCce--EeeeeeEEeec
Q 024975 233 ETHEKQ---PGYDNMW--LHSMVRTKKCS 256 (259)
Q Consensus 233 ~~~~~~---~~~~~~~--~~~~v~~~~~~ 256 (259)
++.+.+ +++..++ .++.++.++..
T Consensus 215 ei~~~~~~~l~~~gv~i~~~~~v~~~~~~ 243 (454)
T COG1249 215 EISKELTKQLEKGGVKILLNTKVTAVEKK 243 (454)
T ss_pred HHHHHHHHHHHhCCeEEEccceEEEEEec
Confidence 443333 2223343 44666666543
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.93 E-value=8.7e-25 Score=181.46 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=133.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceeccccccce
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMG 79 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (259)
+.|||+||||||+|+++|..|++.|.+|+|+|+. .+||+|... +|.|.+.++.... +..+. .... ++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~-~~~~--~g 68 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNV--------GCVPKKVMWYASDLAERMH-DAAD--YG 68 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceecc--------CcCccHHHHHHHHHHHHHh-HHhh--cC
Confidence 4699999999999999999999999999999995 599999876 7777765554332 12111 1111 11
Q ss_pred ecCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
+....... ..+....... +.+.+.+...+.+.+++ ++.++.+. .+++ +|.++ + ..+.|
T Consensus 69 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~----~~~~--~v~v~-~----~~~~~ 130 (450)
T TIGR01421 69 FYQNLENT-----FNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF----TKDG--TVEVN-G----RDYTA 130 (450)
T ss_pred cccCCcCc-----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE----ccCC--EEEEC-C----EEEEe
Confidence 10000000 0000000011 12333345555566887 77765432 1212 34442 2 36899
Q ss_pred CEEEEccCCCCCCccC-CCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----
Q 024975 156 DAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV---- 230 (259)
Q Consensus 156 d~VIlAtG~~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~---- 230 (259)
|+||+||| +.|..| .+||.+.. ..+..+... ...+++++|||+|++|+|+|..|.+.+.+||+++|.+
T Consensus 131 d~vIiAtG--s~p~~p~~i~g~~~~----~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 131 PHILIATG--GKPSFPENIPGAELG----TDSDGFFAL-EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CEEEEecC--CCCCCCCCCCCCcee----EcHHHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 99999999 788888 78876421 111112111 1235899999999999999999999999999999987
Q ss_pred --CcccccCC---CCCCCce--EeeeeeEEee
Q 024975 231 --ADETHEKQ---PGYDNMW--LHSMVRTKKC 255 (259)
Q Consensus 231 --~~~~~~~~---~~~~~~~--~~~~v~~~~~ 255 (259)
++++.+.+ ++..++. .++.|++++.
T Consensus 204 ~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~ 235 (450)
T TIGR01421 204 SFDSMISETITEEYEKEGINVHKLSKPVKVEK 235 (450)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEE
Confidence 22333222 2223444 4466777764
No 14
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.92 E-value=2.4e-24 Score=179.04 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=126.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.|||+||||||+|+++|..++++|.+|+|+|+ +.+||+|... +|.|.+.++.+..........+.......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIR--------GCVPKKLMVYGSTFGGEFEDAAGYGWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecC--------CcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence 58999999999999999999999999999999 5799999876 78887766554322111111111000000
Q ss_pred --CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975 82 --AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
...|... ..........+..+++..+.+.+++ +..+ ++..+.. +.+.+. .++ ..+.||+||
T Consensus 73 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g-~~~~v~~---~~v~v~-~~g----~~~~~d~lI 135 (446)
T TIGR01424 73 KARFDWKKL------LQKKDDEIARLSGLYKRLLANAGVE--LLEG-RARLVGP---NTVEVL-QDG----TTYTAKKIL 135 (446)
T ss_pred CCCcCHHHH------HHHHHHHHHHHHHHHHHHHHhCCcE--EEEE-EEEEecC---CEEEEe-cCC----eEEEcCEEE
Confidence 0000000 0000000033445666666677887 6554 5555542 334443 222 368999999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+||| +.|..|++||.+.. ..+..... ....+++++|||+|.+|+|+|..+.+.+.+|+++++.+
T Consensus 136 iATG--s~p~~p~i~G~~~~----~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 136 IAVG--GRPQKPNLPGHELG----ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred EecC--CcCCCCCCCCccce----echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 9999 78888888886431 11111111 11235889999999999999999999999999999987
No 15
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.92 E-value=6.4e-24 Score=177.29 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=131.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (259)
+|||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|... +|.|.+.++... .+..+.. .......+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~--------gciP~K~l~~~a~~~~~~~~-~~~~g~~~ 74 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV--------GCIPSKALLHVAKVIEEAKA-LAEHGIVF 74 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC--------CcccHHHHHHHHHHHHHHhh-hhhcCccc
Confidence 5999999999999999999999999999999987899999765 677665544422 1221111 10000000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
... ......+. ..+...+++.+++ ++.+ ++..+. .+.+.|...+ ++
T Consensus 75 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~a~~~~---~~~v~v~~~~--g~ 131 (471)
T PRK06467 75 GEP---------------KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVNG-LGKFTG---GNTLEVTGED--GK 131 (471)
T ss_pred CCC---------------CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc---CCEEEEecCC--Cc
Confidence 000 00012222 2223344555777 5554 333322 2445555433 22
Q ss_pred eEEEEeCEEEEccCCCCCCc-cCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975 150 VEEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r 228 (259)
...+.||+||+||| +.|. .|.+++... ....+....... ..+++++|||+|++|+|+|..|.+.|.+||++++
T Consensus 132 ~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~ 205 (471)
T PRK06467 132 TTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM 205 (471)
T ss_pred eEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence 34799999999999 6775 344444221 122222222222 2348999999999999999999999999999999
Q ss_pred CC------Cccc----ccCCCCCCCceEeeeeeEEee
Q 024975 229 SV------ADET----HEKQPGYDNMWLHSMVRTKKC 255 (259)
Q Consensus 229 ~~------~~~~----~~~~~~~~~~~~~~~v~~~~~ 255 (259)
.+ ++++ .+.+.+..++..++.|++++.
T Consensus 206 ~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~ 242 (471)
T PRK06467 206 FDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEA 242 (471)
T ss_pred CCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEE
Confidence 87 2222 233333345555677776653
No 16
>PRK06370 mercuric reductase; Validated
Probab=99.91 E-value=7.2e-24 Score=177.14 Aligned_cols=188 Identities=21% Similarity=0.266 Sum_probs=121.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+|||+|||+||+|+++|..|+++|.+|+|+|+. .+||+|... +|.|.+.++.............. +++.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~--~g~~ 73 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT--------GCVPTKTLIASARAAHLARRAAE--YGVS 73 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc--------ccCcHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 489999999999999999999999999999995 689998765 77776655543322211111111 1110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
... ..-.....+. ..+...+++. +++ ++.++.+. . +..++.++.
T Consensus 74 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~----~--~~~~v~v~~---- 129 (463)
T PRK06370 74 VGG------------PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF----E--SPNTVRVGG---- 129 (463)
T ss_pred cCc------------cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE----c--cCCEEEECc----
Confidence 000 0000012222 2334444444 777 66665432 1 123344422
Q ss_pred eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~ 229 (259)
..+.||+||+||| +.|..|.+||.+.. ........... ...+++++|||+|++|+|+|..|.+.+.+|++++|.
T Consensus 130 -~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 130 -ETLRAKRIFINTG--ARAAIPPIPGLDEV--GYLTNETIFSL-DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred -EEEEeCEEEEcCC--CCCCCCCCCCCCcC--ceEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 3689999999999 78999999987642 11222222211 223589999999999999999999999999999998
Q ss_pred C
Q 024975 230 V 230 (259)
Q Consensus 230 ~ 230 (259)
+
T Consensus 204 ~ 204 (463)
T PRK06370 204 P 204 (463)
T ss_pred C
Confidence 7
No 17
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.91 E-value=1.1e-23 Score=176.09 Aligned_cols=217 Identities=18% Similarity=0.150 Sum_probs=133.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (259)
+|||+||||||+|+++|..|.++|.+|+|||+.+.+||+|... ++.|.+.+.... .+..+.... .+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~--------gcipsk~l~~~~~~~~~~~~~~-----~~ 71 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT--------GTIPSKALREAVLRLIGFNQNP-----LY 71 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc--------CCCCHHHHHHHHHHHHHHhhhh-----hh
Confidence 4899999999999999999999999999999988899998765 455443222211 111110000 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
..++.. ...+..+ +..++.+.+.+.+++ ++.+ ++..+. .+.+.+...++ .
T Consensus 72 ~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~---~~~~~v~~~~g--~ 132 (461)
T PRK05249 72 SSYRVK-----------LRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVD---PHTVEVECPDG--E 132 (461)
T ss_pred cccCCc-----------CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEec---CCEEEEEeCCC--c
Confidence 000000 0011122 233445555666777 6655 333332 24566665443 2
Q ss_pred eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~ 229 (259)
...+.||+||+||| +.|..|++++... ...............+++++|||+|++|+|+|..|.+.+.+|++++|+
T Consensus 133 ~~~~~~d~lviATG--s~p~~p~~~~~~~---~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 133 VETLTADKIVIATG--SRPYRPPDVDFDH---PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred eEEEEcCEEEEcCC--CCCCCCCCCCCCC---CeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 34689999999999 7888877665432 222222211122234689999999999999999999999999999998
Q ss_pred C------Ccccc----cCCCC-CCCceEeeeeeEEee
Q 024975 230 V------ADETH----EKQPG-YDNMWLHSMVRTKKC 255 (259)
Q Consensus 230 ~------~~~~~----~~~~~-~~~~~~~~~v~~~~~ 255 (259)
+ ++++. +.+.+ ...+..++.|++++.
T Consensus 208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~ 244 (461)
T PRK05249 208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEG 244 (461)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEE
Confidence 8 22222 22222 133334567777764
No 18
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.91 E-value=3.3e-25 Score=176.35 Aligned_cols=214 Identities=21% Similarity=0.207 Sum_probs=128.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccce-eccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR-VNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (259)
.+|+++||.||++|++|..|.+.+ .++..||+.+.+ .|+.. +......+......++. ...|...+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~g---------mll~~~~~q~~fl~Dlvt~~~P~s~~s 70 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPG---------MLLPGARMQVSFLKDLVTLRDPTSPFS 70 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGG---------G--SS-B-SS-TTSSSSTTT-TTSTTS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCc---------cCCCCCccccccccccCcCcCCCCccc
Confidence 589999999999999999999986 899999997654 23321 11111111111111111 112222222
Q ss_pred ecCCCCCccCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC---cEEEEEEecCCceEEEEe
Q 024975 80 FQAYPFVARNYE-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN---KWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~~v~~~~g~~~~~~~~a 155 (259)
|..+-....-.. .-.....+|++.+|.+|++|.++++... ++++++|++|....++ .|.|.+.+.++....+.|
T Consensus 71 flnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~a 148 (341)
T PF13434_consen 71 FLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRA 148 (341)
T ss_dssp HHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEE
T ss_pred HHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEe
Confidence 222211110000 0012356789999999999999998877 9999999999987633 499999765566679999
Q ss_pred CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCC--CCCCCeEEEEccCcCHHHHHHHHhcccC--eEEEEecCC
Q 024975 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN--PFQDQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV 230 (259)
Q Consensus 156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~a~e~a~~l~~~~~--~v~~~~r~~ 230 (259)
+.||+|+| ..|.+|...........++|+..+.... ..+.++|+|||+|.||.|++..|.+.+. +|+|+.|++
T Consensus 149 r~vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 149 RNVVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp SEEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CeEEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 99999999 7888887443222235778888766442 4567999999999999999999988764 799999999
No 19
>PLN02507 glutathione reductase
Probab=99.91 E-value=7.6e-24 Score=177.52 Aligned_cols=225 Identities=15% Similarity=0.111 Sum_probs=136.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
.||++|||+||+|+.+|..|.++|.+|+|+|+ ...+||+|... +|.|.+.++...........
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~--------GciPsK~l~~~a~~~~~~~~ 96 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIR--------GCVPKKILVYGATFGGEFED 96 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeecc--------CchhHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999996 35689999765 77777766554322111111
Q ss_pred cccccceec---CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 73 LPRELMGFQ---AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 73 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
......... ...|... .........++...++..+...+++ ++.+ ++..+. ...++|...++ +
T Consensus 97 ~~~~G~~~~~~~~id~~~~------~~~~~~~~~~~~~~~~~~l~~~gV~--~i~g-~a~~vd---~~~v~V~~~~g--~ 162 (499)
T PLN02507 97 AKNYGWEINEKVDFNWKKL------LQKKTDEILRLNGIYKRLLANAGVK--LYEG-EGKIVG---PNEVEVTQLDG--T 162 (499)
T ss_pred HHhcCcccCCCCccCHHHH------HHHHHHHHHHHHHHHHHHHHhCCcE--EEEE-EEEEec---CCEEEEEeCCC--c
Confidence 111011000 0000000 0000000012223334444555776 4443 444443 24567766543 2
Q ss_pred eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~ 229 (259)
...+.||+||+||| +.|..|.+||.... ......... ...+++++|||+|.+|+|+|..+.+.+.+|++++|.
T Consensus 163 ~~~~~~d~LIIATG--s~p~~p~ipG~~~~----~~~~~~~~l-~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~ 235 (499)
T PLN02507 163 KLRYTAKHILIATG--SRAQRPNIPGKELA----ITSDEALSL-EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRK 235 (499)
T ss_pred EEEEEcCEEEEecC--CCCCCCCCCCccce----echHHhhhh-hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEec
Confidence 34689999999999 78888888886431 111111111 123589999999999999999999999999999998
Q ss_pred C------Cccccc----CCCC-CCCceEeeeeeEEee
Q 024975 230 V------ADETHE----KQPG-YDNMWLHSMVRTKKC 255 (259)
Q Consensus 230 ~------~~~~~~----~~~~-~~~~~~~~~v~~~~~ 255 (259)
+ ++++.+ .+.+ ...+..++.|++++.
T Consensus 236 ~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~ 272 (499)
T PLN02507 236 ELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTK 272 (499)
T ss_pred CCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence 7 222222 2222 234445577777764
No 20
>PRK06116 glutathione reductase; Validated
Probab=99.91 E-value=2.4e-24 Score=179.52 Aligned_cols=215 Identities=16% Similarity=0.224 Sum_probs=133.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccccccc-ceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS-LRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (259)
.|||+||||||+|+++|..|+++|.+|+|+|+. .+||+|... +|.|.+.++....... +...........
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~--------gciP~k~l~~~~~~~~~~~~~~~~~g~~~ 74 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNV--------GCVPKKLMWYGAQIAEAFHDYAPGYGFDV 74 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhcc--------CcchHHHHHHHHHHHHHHHhHHHhcCCCC
Confidence 589999999999999999999999999999995 799999764 6676665544332211 111011000000
Q ss_pred c--CCCCCccCCCCCCCCCCCCC----HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975 81 Q--AYPFVARNYEGSVDLRRYPG----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (259)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (259)
. ...|. ..... ...+...+.+.+.+.+++ ++.+ +++.+. ..+|++ ++ ..+.
T Consensus 75 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~-----~~~v~~-~g----~~~~ 131 (450)
T PRK06116 75 TENKFDWA----------KLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD-----AHTVEV-NG----ERYT 131 (450)
T ss_pred CCCCcCHH----------HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc-----CCEEEE-CC----EEEE
Confidence 0 00000 00000 022333344455566887 6655 444442 234555 32 3799
Q ss_pred eCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC---
Q 024975 155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (259)
Q Consensus 155 ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~--- 231 (259)
||+||+||| +.|..|.++|... ..++...... ...+++++|||+|.+|+|+|..|.+.+.+|++++|.+.
T Consensus 132 ~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~ 204 (450)
T PRK06116 132 ADHILIATG--GRPSIPDIPGAEY----GITSDGFFAL-EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR 204 (450)
T ss_pred eCEEEEecC--CCCCCCCCCCcce----eEchhHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc
Confidence 999999999 7888888888643 1222222211 22358999999999999999999999999999999872
Q ss_pred ---cccccCC---CCCCCc--eEeeeeeEEee
Q 024975 232 ---DETHEKQ---PGYDNM--WLHSMVRTKKC 255 (259)
Q Consensus 232 ---~~~~~~~---~~~~~~--~~~~~v~~~~~ 255 (259)
+++.+.+ ++..++ ..++.|++++.
T Consensus 205 ~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~ 236 (450)
T PRK06116 205 GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEK 236 (450)
T ss_pred ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEE
Confidence 2222212 222334 44577777764
No 21
>PTZ00058 glutathione reductase; Provisional
Probab=99.91 E-value=4.2e-24 Score=179.91 Aligned_cols=221 Identities=13% Similarity=0.158 Sum_probs=136.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.||++||||||+|+++|..+++.|.+|+|+|++ .+||+|... +|.|.+.++.+..................
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~ 118 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV--------GCVPKKIMFNAASIHDILENSRHYGFDTQ 118 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc--------CCCCCchhhhhcccHHHHHHHHhcCCCcc
Confidence 589999999999999999999999999999996 699999876 88888877765543322211111110000
Q ss_pred -CCCCCccCCCCCCCCCCCCCHHH----HHHHHHHHHHHhCCceeEEeceeE-EE---EE------------EeCCCcEE
Q 024975 82 -AYPFVARNYEGSVDLRRYPGHEE----VLRYLQNFAREFGVDQVVRLHTEV-LN---AR------------LVESNKWK 140 (259)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~v~~~~~v-~~---i~------------~~~~~~~~ 140 (259)
...+. ......+. +.+.+.+.+++.+++ +..+... ++ +. ..+++..+
T Consensus 119 ~~~d~~----------~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~ 186 (561)
T PTZ00058 119 FSFNLP----------LLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVT 186 (561)
T ss_pred CccCHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccccce
Confidence 00000 00000122 233344555556777 6554421 11 00 00012222
Q ss_pred EE------EEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHH
Q 024975 141 VK------SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKR 214 (259)
Q Consensus 141 v~------~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~ 214 (259)
|. .+++ ..++||+||+||| +.|..|.++|.+. ...+..+.... .+++++|||+|.+|+|+|.
T Consensus 187 v~~~~~~~~~~g----~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~ 254 (561)
T PTZ00058 187 IVSAGVSQLDDG----QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELIN 254 (561)
T ss_pred eeeccceecCCC----cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHHH
Confidence 31 1222 2699999999999 8899999888642 22333332221 2689999999999999999
Q ss_pred HHhcccCeEEEEecCC------Cccccc----CCCC-CCCceEeeeeeEEee
Q 024975 215 DLAGFAKEVHIASRSV------ADETHE----KQPG-YDNMWLHSMVRTKKC 255 (259)
Q Consensus 215 ~l~~~~~~v~~~~r~~------~~~~~~----~~~~-~~~~~~~~~v~~~~~ 255 (259)
.+.+.|.+|+++.|.+ ++++.+ .+.+ ...+..+..|+++++
T Consensus 255 ~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~ 306 (561)
T PTZ00058 255 VVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEK 306 (561)
T ss_pred HHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEe
Confidence 9999999999999987 222222 2221 234444566777764
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.91 E-value=5.3e-24 Score=178.05 Aligned_cols=194 Identities=21% Similarity=0.297 Sum_probs=123.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
|||+||||||+|+++|..|+++|.+|+|+|+.+ +||+|... +|.|.+.++............. +++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~---~g~~~ 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNV--------GCVPSKMLLRAAEVAHYARKPP---FGGLA 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeee--------cEEccHHHHHHHHHHHHhhccC---ccccc
Confidence 799999999999999999999999999999965 89998765 7777665554332222111110 11100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHH-----HHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRY-----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~ 157 (259)
... . ..+........++... +...+++.+++ +..+. +..+ +..+|.+.++. ..+.+|+
T Consensus 69 ~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~-~~~~-----~~~~v~v~~g~---~~~~~~~ 131 (463)
T TIGR02053 69 ATV--A----VDFGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRGR-ARFK-----DPKTVKVDLGR---EVRGAKR 131 (463)
T ss_pred CCC--c----cCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEEE-EEEc-----cCCEEEEcCCe---EEEEeCE
Confidence 000 0 0011111111233222 23445566777 65543 3322 22455554432 3689999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
||+||| +.|..|.+||.+.. + ...+....... ..+++++|||+|.+|+|+|..|.+.+.+|++++|.+
T Consensus 132 lIiATG--s~p~~p~i~G~~~~-~-~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 132 FLIATG--ARPAIPPIPGLKEA-G-YLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred EEEcCC--CCCCCCCCCCcccC-c-eECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 999999 78899999987653 1 12222222211 234899999999999999999999999999999987
No 23
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=2.6e-23 Score=173.93 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=119.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.||++||||||+|+++|..|+++|.+|+|+|+.. +||+|... +|.|.+.++..............
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~--------gciP~k~l~~~~~~~~~~~~~~~------ 68 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR--------GCIPSKALLHAAERADEARHSED------ 68 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec--------ccCCcHHHHHhhhHHHHHHHHHh------
Confidence 5899999999999999999999999999999977 99999865 66666554443222111111100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (259)
+.+.. .........+.++ +...+++.+++ +..+ +++.+. ...+.+...++.
T Consensus 69 -~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~---~~~~~v~~~~~~--- 130 (462)
T PRK06416 69 -FGIKA--------ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVD---PNTVRVMTEDGE--- 130 (462)
T ss_pred -cCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc---CCEEEEecCCCc---
Confidence 00000 0001111333333 44445556777 6655 344332 134555432222
Q ss_pred EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..+.||+||+||| +.|..| ||... .+...+...........+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus 131 ~~~~~d~lViAtG--s~p~~~--pg~~~-~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 131 QTYTAKNIILATG--SRPREL--PGIEI-DGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred EEEEeCEEEEeCC--CCCCCC--CCCCC-CCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4799999999999 666543 34432 222222221111112235899999999999999999999999999999987
No 24
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.91 E-value=2.2e-23 Score=173.14 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=118.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC-cCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
.|||+||||||+|+++|..|+++|.+|+|+|+.+. +||+|... +|.|.+.++.....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~--------gciP~k~~~~~~~~-------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINI--------GCIPTKTLLVAAEK-------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecC--------ccccchHhhhhhhc--------------
Confidence 58999999999999999999999999999999864 69988654 55554433332110
Q ss_pred cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
...|... .... ..+.....+.+.+.+++ ++.++ +..+ +++ +|.+..++ ....+.||
T Consensus 61 -~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g~-~~~~---~~~--~v~v~~~~-~~~~~~~d 120 (438)
T PRK07251 61 -NLSFEQV----------MATKNTVTSRLRGKNYAMLAGSGVD--LYDAE-AHFV---SNK--VIEVQAGD-EKIELTAE 120 (438)
T ss_pred -CCCHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-EEEc---cCC--EEEEeeCC-CcEEEEcC
Confidence 0000000 0000 11222233445556776 55443 2222 213 33333321 12468999
Q ss_pred EEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 157 ~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+||+||| +.|+.|.+||.....+ ...+..+... ...+++++|||+|++|+|+|..+.+.+.+|++++|.+
T Consensus 121 ~vViATG--s~~~~p~i~G~~~~~~-v~~~~~~~~~-~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 121 TIVINTG--AVSNVLPIPGLADSKH-VYDSTGIQSL-ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred EEEEeCC--CCCCCCCCCCcCCCCc-EEchHHHhcc-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 9999999 7888899998754322 2222222222 2235899999999999999999999999999999987
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=99.91 E-value=5.4e-23 Score=171.92 Aligned_cols=218 Identities=20% Similarity=0.260 Sum_probs=134.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.|||+||||||+|+++|..|.+.|.+|+|||+. .+||+|... +|.|.+.++.+..........+. ..++.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~--------GciPsk~l~~~a~~~~~~~~~~~-~~g~~ 75 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNI--------GCVPSKIMIRAAHIAHLRRESPF-DDGLS 75 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecC--------CccccHHHHHHHHHHHHHhhccc-cCCcc
Confidence 489999999999999999999999999999996 699999754 77776655543322221111110 00110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHH------------HHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNF------------AREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (259)
... . -+...++.++..+. +.+. +++ +.. .+++.++ .+.|+|.+.++.
T Consensus 76 ~~~----------~---~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~~-g~v~~id---~~~~~V~~~~g~- 135 (468)
T PRK14694 76 AQA----------P---VVDRSALLAQQQARVEELRESKYQSILRENAAIT--VLN-GEARFVD---ERTLTVTLNDGG- 135 (468)
T ss_pred cCC----------C---ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeE--EEE-EEEEEec---CCEEEEEecCCC-
Confidence 000 0 01112333222222 1111 444 333 3566664 256888876642
Q ss_pred ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (259)
Q Consensus 149 ~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r 228 (259)
...++||+||+||| +.|+.|++||.+... ..++..... ....+++++|||+|++|+|+|..|.+.+.+|+++.+
T Consensus 136 -~~~~~~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~ 209 (468)
T PRK14694 136 -EQTVHFDRAFIGTG--ARPAEPPVPGLAETP--YLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR 209 (468)
T ss_pred -eEEEECCEEEEeCC--CCCCCCCCCCCCCCc--eEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 24799999999999 789999999976521 122111111 112358999999999999999999999999999987
Q ss_pred CC-----CcccccCC---CCCCCce--EeeeeeEEee
Q 024975 229 SV-----ADETHEKQ---PGYDNMW--LHSMVRTKKC 255 (259)
Q Consensus 229 ~~-----~~~~~~~~---~~~~~~~--~~~~v~~~~~ 255 (259)
.. ++++.+.+ ++..++. .++.|++++.
T Consensus 210 ~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~ 246 (468)
T PRK14694 210 SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDY 246 (468)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence 53 22222222 2223444 4567777654
No 26
>PRK14727 putative mercuric reductase; Provisional
Probab=99.91 E-value=6.1e-23 Score=171.88 Aligned_cols=225 Identities=17% Similarity=0.201 Sum_probs=132.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
++|++|||+||+|+++|..|.+.|.+|+++|+.+.+||+|... +|.|.+.++....+.......+. .++.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~--------GciPsk~l~~~a~~~~~~~~~~~--~g~~ 85 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV--------GCVPSKILIRAAQLAHQQRSNPF--DGVE 85 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc--------cccccHHHHHHHHHHHHHhhccc--cCcc
Confidence 5899999999999999999999999999999988899999865 77777665554332222211111 0110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHH-----HHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYL-----QNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
... ... .+...+.........+ ....+.. +++ +..+. + ...+.+.+.|...++ ....+.|
T Consensus 86 ~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~G~-a---~f~~~~~v~v~~~~g--~~~~~~~ 151 (479)
T PRK14727 86 AVA-PSI-----DRGLLLHQQQARVEELRHAKYQSILDGNPALT--LLKGY-A---RFKDGNTLVVRLHDG--GERVLAA 151 (479)
T ss_pred cCC-Ccc-----CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeE--EEEEE-E---EEecCCEEEEEeCCC--ceEEEEe
Confidence 000 000 0000000001111111 1112111 444 33332 2 222225566766443 2246999
Q ss_pred CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC-----
Q 024975 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----- 230 (259)
Q Consensus 156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----- 230 (259)
|+||+||| +.|..|.++|..... .......... ...+++++|||+|++|+|+|..|.+.+.+|+++.|..
T Consensus 152 d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~ 226 (479)
T PRK14727 152 DRCLIATG--STPTIPPIPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFRE 226 (479)
T ss_pred CEEEEecC--CCCCCCCCCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcc
Confidence 99999999 789999999875421 1111111111 1235899999999999999999999999999999864
Q ss_pred CcccccCC---CCCCCce--EeeeeeEEee
Q 024975 231 ADETHEKQ---PGYDNMW--LHSMVRTKKC 255 (259)
Q Consensus 231 ~~~~~~~~---~~~~~~~--~~~~v~~~~~ 255 (259)
++++.+.+ ++..++. .++.|+.++.
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~ 256 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLVEH 256 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEEEE
Confidence 23332222 2223444 4567776653
No 27
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=7.9e-23 Score=170.65 Aligned_cols=199 Identities=19% Similarity=0.202 Sum_probs=119.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (259)
.|||+|||+||+|+++|..++++|.+|+|+|+.+.+||+|... +|.|.+.++.... +..+...... .++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~--------gciPsK~l~~~~~~~~~~~~~~~~-~~gi 73 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV--------GCMPSKALLHASELYEAASGGEFA-HLGI 73 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC--------cccccHHHHHHhHHHHHHhhhhhh-hcCc
Confidence 4899999999999999999999999999999877899999876 7888776655432 2211110000 0000
Q ss_pred cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
.... . ..+...+-.. ..+...+....+..+++ +..+. . .+ .+.+.+.|...++ +...+.||
T Consensus 74 ~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a-~~--~~~~~v~v~~~~g--~~~~~~~d 138 (466)
T PRK06115 74 EVKP---T----LNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKGW-G-RL--DGVGKVVVKAEDG--SETQLEAK 138 (466)
T ss_pred cccC---c----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-E-EE--ccCCEEEEEcCCC--ceEEEEeC
Confidence 0000 0 0000000000 11112233333444666 55443 1 22 2224455554432 22469999
Q ss_pred EEEEccCCCCCCccCCCCCCCCCCCc-eEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 157 AVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 157 ~VIlAtG~~s~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+||+||| +.|. .+||... .+. ...+..... ....+++++|||+|++|+|+|..+.+.+.+|++++|.+
T Consensus 139 ~lVIATG--s~p~--~ipg~~~-~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 139 DIVIATG--SEPT--PLPGVTI-DNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred EEEEeCC--CCCC--CCCCCCC-CCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 9999999 5553 3455432 222 222222221 12245899999999999999999999999999999887
No 28
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.90 E-value=1.1e-23 Score=176.15 Aligned_cols=213 Identities=17% Similarity=0.183 Sum_probs=125.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+|||+||||||+|+++|..|.+.|.+|+|+|+ ..+||+|... +|.|.+.++..........+.+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~--------gc~psk~l~~~~~~~~~~~~~~------- 66 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNV--------GCIPSKALIAAAEAFHEAKHAE------- 66 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceecc--------ceeeHHHHHHHHHHHHHHHHHH-------
Confidence 58999999999999999999999999999999 6799999865 5665544333221111111110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH------------hCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE------------FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
.+.... ........++.+++.+.... .+++ +.. .++..+ +.+.+.+ ++
T Consensus 67 ~~gi~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~-----~~~~v~v-~~--- 126 (460)
T PRK06292 67 EFGIHA--------DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKID--KIK-GTARFV-----DPNTVEV-NG--- 126 (460)
T ss_pred hcCCCc--------CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCE--EEE-EEEEEc-----cCCEEEE-Cc---
Confidence 010000 00122335555544443332 2333 222 122221 1233444 22
Q ss_pred eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~ 229 (259)
..+.+|+||+|||. . .|.+||.....+...............+++++|||+|.+|+|+|..|.+.+.+|++++|.
T Consensus 127 -~~~~~d~lIiATGs--~--~p~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~ 201 (460)
T PRK06292 127 -ERIEAKNIVIATGS--R--VPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERG 201 (460)
T ss_pred -EEEEeCEEEEeCCC--C--CCCCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 37999999999994 4 455666543222222222211122234689999999999999999999999999999998
Q ss_pred C------Ccccc----cCCCCCCCceEeeeeeEEee
Q 024975 230 V------ADETH----EKQPGYDNMWLHSMVRTKKC 255 (259)
Q Consensus 230 ~------~~~~~----~~~~~~~~~~~~~~v~~~~~ 255 (259)
+ ++++. +.+.+..+++.++.|++++.
T Consensus 202 ~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~ 237 (460)
T PRK06292 202 DRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEK 237 (460)
T ss_pred CCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEE
Confidence 7 22222 22222244445667777654
No 29
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.90 E-value=3.8e-23 Score=173.12 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=122.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (259)
.||++||||||+|+++|..|+++|.+|+|+|+. .+||+|... +|.|++.++... .+..+.. ........
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~-~~~~g~~~ 73 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK--------GCIPSKALLHSAEVFQTAKK-ASPFGISV 73 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC--------CcCchHHHHHHHHHHHHHHH-HHhcCccC
Confidence 589999999999999999999999999999995 789999876 777776655432 2222221 11100000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHH----HHHHHHHHhCCceeEEeceeEEEEEEe----CCCcEEEEEEecCCceEE
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLR----YLQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVVEE 152 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~~~~ 152 (259)
...+. .+....-..+++.. .....+++.+++ ++.+ +++.+... +++.+.|.+.++ ....
T Consensus 74 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g-~a~~i~~~~~~~~~~~~~v~~~~g--~~~~ 140 (472)
T PRK05976 74 SGPAL--------DFAKVQERKDGIVDRLTKGVAALLKKGKID--VFHG-IGRILGPSIFSPMPGTVSVETETG--ENEM 140 (472)
T ss_pred CCCcc--------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEeCCCCCcCCceEEEEEeCCC--ceEE
Confidence 00000 00000000122222 233444555777 5554 55555432 012566666543 2247
Q ss_pred EEeCEEEEccCCCCCCccCCCCCCCCCCCc-eEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+.||+||+||| +.|+.+ |+.. +.+. ...+...... ...+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus 141 ~~~d~lViATG--s~p~~~--p~~~-~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 141 IIPENLLIATG--SRPVEL--PGLP-FDGEYVISSDEALSL-ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred EEcCEEEEeCC--CCCCCC--CCCC-CCCceEEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 99999999999 666543 2222 1122 2222222221 1235899999999999999999999999999999987
No 30
>PRK13748 putative mercuric reductase; Provisional
Probab=99.90 E-value=6.4e-23 Score=175.50 Aligned_cols=217 Identities=20% Similarity=0.278 Sum_probs=132.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
|||+||||||+|+++|..|++.|.+|+|+|++ .+||+|... +|.|.+.++.+..........+.+ .++
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~~~-~g~-- 166 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GGI-- 166 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc--------CccccHHHHHHHHHHHHHhccccc-CCc--
Confidence 89999999999999999999999999999997 799999865 777766555443322221111100 011
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHH------------HHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQ------------NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
+.. ... .....+.+... ..+... +++ +..+ ++..+. .+.+.|...++ .
T Consensus 167 -~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~---~~~~~v~~~~g--~ 227 (561)
T PRK13748 167 -AAT--------VPT--IDRSRLLAQQQARVDELRHAKYEGILDGNPAIT--VLHG-EARFKD---DQTLIVRLNDG--G 227 (561)
T ss_pred -cCC--------CCc--cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeE--EEEE-EEEEec---CCEEEEEeCCC--c
Confidence 000 000 01122222221 112222 444 4433 444332 24566665443 2
Q ss_pred eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~ 229 (259)
...+.||+||+||| +.|..|.++|.+... ........ .....+++++|||+|++|+|+|..|.+.+.+|+++.|.
T Consensus 228 ~~~~~~d~lviAtG--s~p~~p~i~g~~~~~--~~~~~~~~-~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 228 ERVVAFDRCLIATG--ASPAVPPIPGLKETP--YWTSTEAL-VSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred eEEEEcCEEEEcCC--CCCCCCCCCCCCccc--eEccHHHh-hcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 24699999999999 789999999876421 11111111 11223589999999999999999999999999999986
Q ss_pred C-----CcccccCC---CCCCCce--EeeeeeEEee
Q 024975 230 V-----ADETHEKQ---PGYDNMW--LHSMVRTKKC 255 (259)
Q Consensus 230 ~-----~~~~~~~~---~~~~~~~--~~~~v~~~~~ 255 (259)
. ++++.+.+ ++..++. .++.|++++.
T Consensus 303 ~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~ 338 (561)
T PRK13748 303 TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAH 338 (561)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe
Confidence 4 23333222 2223444 4567777653
No 31
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.90 E-value=3.9e-23 Score=171.79 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=130.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
.|||+||||||+|+++|.+|+++|.+|+|+|+.+ .+||+|... +|.|.+.++.....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~--------gcip~k~l~~~~~~-------------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINI--------GCIPTKTLVHDAQQ-------------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeec--------cccchHHHHHHhcc--------------
Confidence 5899999999999999999999999999999976 479999754 44443322221100
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----HHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
...|. ......+.+..++. +.....+++ +..+ ++..+. .+.+.|...++. ..+.+
T Consensus 61 -~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~---~~~~~v~~~~g~---~~~~~ 120 (441)
T PRK08010 61 -HTDFV----------RAIQRKNEVVNFLRNKNFHNLADMPNID--VIDG-QAEFIN---NHSLRVHRPEGN---LEIHG 120 (441)
T ss_pred -CCCHH----------HHHHHHHHHHHHHHHhHHHHHhhcCCcE--EEEE-EEEEec---CCEEEEEeCCCe---EEEEe
Confidence 00000 00000122223332 122222565 4443 444443 245666654432 35899
Q ss_pred CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC-----
Q 024975 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----- 230 (259)
Q Consensus 156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----- 230 (259)
|+||+||| +.|..|.+||...+.+ ...+...... ...+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus 121 d~lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~~-~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 121 EKIFINTG--AQTVVPPIPGITTTPG-VYDSTGLLNL-KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CEEEEcCC--CcCCCCCCCCccCCCC-EEChhHhhcc-cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 99999999 7888899999765433 2222222222 2345799999999999999999999999999999987
Q ss_pred -CcccccCC---CCCCCc--eEeeeeeEEeec
Q 024975 231 -ADETHEKQ---PGYDNM--WLHSMVRTKKCS 256 (259)
Q Consensus 231 -~~~~~~~~---~~~~~~--~~~~~v~~~~~~ 256 (259)
++++.+.+ ++..++ +.++.|++++..
T Consensus 197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~ 228 (441)
T PRK08010 197 EDRDIADNIATILRDQGVDIILNAHVERISHH 228 (441)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence 12222211 222344 445777777653
No 32
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-22 Score=145.53 Aligned_cols=191 Identities=18% Similarity=0.272 Sum_probs=148.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC----CcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (259)
.+|+|||+||++..+|.++++..++.++||-.- .+||....+. +..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT------------------------------~ve 58 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT------------------------------DVE 58 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee------------------------------ccc
Confidence 479999999999999999999999999999742 1244443321 111
Q ss_pred eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V 158 (259)
.|+.+|.-. ...++...+++...++|.+ ++..+|.+++... ..|.+.++.. .+.+|.|
T Consensus 59 NfPGFPdgi-------------~G~~l~d~mrkqs~r~Gt~---i~tEtVskv~~ss-kpF~l~td~~-----~v~~~av 116 (322)
T KOG0404|consen 59 NFPGFPDGI-------------TGPELMDKMRKQSERFGTE---IITETVSKVDLSS-KPFKLWTDAR-----PVTADAV 116 (322)
T ss_pred cCCCCCccc-------------ccHHHHHHHHHHHHhhcce---eeeeehhhccccC-CCeEEEecCC-----ceeeeeE
Confidence 122222111 2378999999999999998 4556899999887 8899998763 6999999
Q ss_pred EEccCCCCCCccCCCCCC--CCCCCceEEcccCCCCCC--CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----
Q 024975 159 VVCNGHFSVPRLAQVPGI--DSWPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV---- 230 (259)
Q Consensus 159 IlAtG~~s~~~~~~~~g~--~~~~~~~~~~~~~~~~~~--~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~---- 230 (259)
|+||| ...+...+||. ..|+......+..++... +.++..+|||+|.+|+|-|..|.+.+..|++++|++
T Consensus 117 I~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA 194 (322)
T KOG0404|consen 117 ILATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA 194 (322)
T ss_pred EEecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH
Confidence 99999 55666677765 337888888887777644 788999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCceEe
Q 024975 231 ADETHEKQPGYDNMWLH 247 (259)
Q Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (259)
...+.++..++++|...
T Consensus 195 s~~Mq~ra~~npnI~v~ 211 (322)
T KOG0404|consen 195 SKIMQQRAEKNPNIEVL 211 (322)
T ss_pred HHHHHHHHhcCCCeEEE
Confidence 45677777777777754
No 33
>PLN02546 glutathione reductase
Probab=99.90 E-value=2.2e-23 Score=175.68 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=126.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
.|||+|||+||+|+.+|..|+++|.+|+|+|+ ...+||+|... +|.|.+.++...........
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~--------GCiPsK~l~~aa~~~~~~~~ 150 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR--------GCVPKKLLVYASKYSHEFEE 150 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc--------chHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999999996 24589999876 88888776664433221111
Q ss_pred cccccceec---CCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975 73 LPRELMGFQ---AYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (259)
Q Consensus 73 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~ 145 (259)
......... ...|. ...... .++..++...+.+.+++ ++.+ +++.+.. . .|.++
T Consensus 151 ~~~~g~~~~~~~~~d~~----------~~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~G-~a~~vd~---~--~V~v~- 211 (558)
T PLN02546 151 SRGFGWKYETEPKHDWN----------TLIANKNAELQRLTGIYKNILKNAGVT--LIEG-RGKIVDP---H--TVDVD- 211 (558)
T ss_pred hhhcCcccCCCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEccC---C--EEEEC-
Confidence 111111000 00100 000000 33445566666666777 5543 4444431 2 34442
Q ss_pred cCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEE
Q 024975 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225 (259)
Q Consensus 146 g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~ 225 (259)
+ ..+.||+||+||| +.|..|.+||.... ....... .....+++++|||+|++|+|+|..|.+.+.+|++
T Consensus 212 G----~~~~~D~LVIATG--s~p~~P~IpG~~~v----~~~~~~l-~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl 280 (558)
T PLN02546 212 G----KLYTARNILIAVG--GRPFIPDIPGIEHA----IDSDAAL-DLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHV 280 (558)
T ss_pred C----EEEECCEEEEeCC--CCCCCCCCCChhhc----cCHHHHH-hccccCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 2 3689999999999 88999999986531 1111111 1123468999999999999999999999999999
Q ss_pred EecCC
Q 024975 226 ASRSV 230 (259)
Q Consensus 226 ~~r~~ 230 (259)
+.|.+
T Consensus 281 v~~~~ 285 (558)
T PLN02546 281 FIRQK 285 (558)
T ss_pred EEecc
Confidence 99987
No 34
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.89 E-value=3.2e-22 Score=167.18 Aligned_cols=195 Identities=18% Similarity=0.249 Sum_probs=121.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccccccccceecc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (259)
.||++|||+||+|+.+|..+++.|.+|+++|+.. .+||+|... +|.|++.++.+........+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~--------GCiPsK~l~~~a~~~~~~~~~ 73 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNV--------GCIPKKLMHQAALLGQALKDS 73 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccccc--------CcCchhHHHHHHHHHHHHhhh
Confidence 5899999999999999999999999999999731 478998876 888888766654322111111
Q ss_pred ccccceecCCCCCccCCCCCCCCCCCC----CHH----HHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975 74 PRELMGFQAYPFVARNYEGSVDLRRYP----GHE----EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (259)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~ 145 (259)
.. +++. +.. .....|+ ... .+.......++..+++ +..+ ...-+ +.+.+.|...+
T Consensus 74 ~~--~g~~---~~~------~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i~G-~a~f~---~~~~v~v~~~~ 136 (484)
T TIGR01438 74 RN--YGWN---VEE------TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YENA-YAEFV---DKHRIKATNKK 136 (484)
T ss_pred hh--cCcc---cCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEE-EEEEc---CCCEEEEeccC
Confidence 11 1110 000 0000110 001 1222223334445666 4433 32222 21334443222
Q ss_pred cCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEE
Q 024975 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225 (259)
Q Consensus 146 g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~ 225 (259)
+....+.||+||+||| +.|..|.+||...+ ...+...... ...+++++|||+|++|+|+|..|.+.+.+|++
T Consensus 137 --g~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 208 (484)
T TIGR01438 137 --GKEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSL-PYCPGKTLVVGASYVALECAGFLAGIGLDVTV 208 (484)
T ss_pred --CCceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhcc-cccCCCEEEECCCHHHHHHHHHHHHhCCcEEE
Confidence 2234799999999999 78888999887442 1222112111 12346899999999999999999999999999
Q ss_pred EecC
Q 024975 226 ASRS 229 (259)
Q Consensus 226 ~~r~ 229 (259)
+.|.
T Consensus 209 i~~~ 212 (484)
T TIGR01438 209 MVRS 212 (484)
T ss_pred EEec
Confidence 9985
No 35
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.89 E-value=4.7e-23 Score=171.80 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=120.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeC--------CCcCceeeeCCCCCCCCCCCCCCCCCccccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
.||++|||+||+|..+|..++++ |.+|+|+|+. ..+||+|... +|.|.+.++.+.........
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~ 74 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV--------GCVPKKLMVTGAQYMDTLRE 74 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc--------CCccHHHHHHHHHHHHHHHH
Confidence 58999999999999999999997 8999999984 4699999877 89998887765532222111
Q ss_pred cccccceecCCCCCccCCCCCCCCCCCCCHHHHH----HHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEe-c
Q 024975 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVL----RYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRK-K 146 (259)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g 146 (259)
... +++........ ..+....-..+.+. ..+.+.++. .+++ +..+. ..- .+.+...|.... +
T Consensus 75 ~~~--~gi~~~~~~~~----~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~G~-a~f---~~~~~v~V~~~~~~ 142 (486)
T TIGR01423 75 SAG--FGWEFDRSSVK----ANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFLGW-GAL---EDKNVVLVRESADP 142 (486)
T ss_pred hhc--cCeeccCCccc----cCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEEEE-EEE---ccCCEEEEeeccCC
Confidence 111 11100000000 00000000112222 222223333 2555 44443 221 111333443211 1
Q ss_pred CC-ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcc---cCe
Q 024975 147 DD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF---AKE 222 (259)
Q Consensus 147 ~~-~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~---~~~ 222 (259)
++ ....+.||+||+||| +.|..|.++|.+.. ..+..... ....+++++|||+|++|+|+|..+..+ |.+
T Consensus 143 ~~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~~----~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~ 215 (486)
T TIGR01423 143 KSAVKERLQAEHILLATG--SWPQMLGIPGIEHC----ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGK 215 (486)
T ss_pred CCCcceEEECCEEEEecC--CCCCCCCCCChhhe----echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCe
Confidence 11 124799999999999 78888988886531 11111111 112458999999999999999877554 889
Q ss_pred EEEEecCC
Q 024975 223 VHIASRSV 230 (259)
Q Consensus 223 v~~~~r~~ 230 (259)
|++++|.+
T Consensus 216 Vtli~~~~ 223 (486)
T TIGR01423 216 VTLCYRNN 223 (486)
T ss_pred EEEEecCC
Confidence 99999988
No 36
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.89 E-value=3.4e-22 Score=167.28 Aligned_cols=195 Identities=19% Similarity=0.262 Sum_probs=118.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (259)
+|||+||||||+|+++|.+|.++|.+|+|+|+ +.+||+|... +|.|.+.++... .+..+.. ........
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~--------gc~Psk~l~~~~~~~~~~~~-~~~~g~~~ 70 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV--------GCIPTKALLHSAEVYDEIKH-AKDYGIEV 70 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec--------CccchHHHHHHhhHHHHHHH-HHhcCCCC
Confidence 48999999999999999999999999999999 7899999765 555554333322 2222211 00000000
Q ss_pred c--CCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975 81 Q--AYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (259)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (259)
. .+++.. ..... ..+...+.+..++.+++ +..+ ++..+. .+.+.+...++. ..+.
T Consensus 71 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~---~~~~~v~~~~g~---~~~~ 131 (461)
T TIGR01350 71 ENVSVDWEK----------MQKRKNKVVKKLVGGVKGLLKKNKVT--VIKG-EAKFLD---PGTVLVTGENGE---ETLT 131 (461)
T ss_pred CCCcCCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc---CCEEEEecCCCc---EEEE
Confidence 0 000000 00000 11222334445556776 5554 333322 244555554332 4799
Q ss_pred eCEEEEccCCCCCCccCCCC-CCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 155 FDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 155 ad~VIlAtG~~s~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
||+||+||| +.|+.|+++ +.. +...+...........+++++|||+|.+|+|+|..|.+.+.+|+++.|.+
T Consensus 132 ~d~lVlAtG--~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 132 AKNIIIATG--SRPRSLPGPFDFD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred eCEEEEcCC--CCCCCCCCCCCCC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 999999999 677777665 221 22222222111222235899999999999999999999999999999987
No 37
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.89 E-value=2.9e-22 Score=167.77 Aligned_cols=224 Identities=17% Similarity=0.194 Sum_probs=131.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEee------CCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceeccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK------GEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLP 74 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 74 (259)
.||++|||+||+|+++|.+|.+.|.+|+|+|+ ...+||+|... +|.|.+.++... .+..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~--------gc~P~k~l~~~a~~~~~~~~~~~ 75 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV--------GCIPSKALLASSEEFENAGHHFA 75 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc--------cccHHHHHHHHHHHHHHHHhhHH
Confidence 58999999999999999999999999999998 35688888654 555543333221 1111111000
Q ss_pred cccceecCCCCCccCCCCCCCCCCCC---C-HH----HHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975 75 RELMGFQAYPFVARNYEGSVDLRRYP---G-HE----EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (259)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~----~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (259)
......... ...|+ . .. .+...+....+..+++ +.. .++..+...+ +.++|.+..+
T Consensus 76 ~~G~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~~~~-~~~~v~v~~~ 139 (475)
T PRK06327 76 DHGIHVDGV------------KIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VLK-GRGSFVGKTD-AGYEIKVTGE 139 (475)
T ss_pred hcCccCCCC------------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEecCCC-CCCEEEEecC
Confidence 000000000 00111 0 01 1222334444455776 554 3555555443 5677777643
Q ss_pred CCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEE
Q 024975 147 DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (259)
Q Consensus 147 ~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~ 226 (259)
++ ..++||+||+||| +.|+.++ +.. +.+...+...........+++++|+|+|.+|+|+|..|.+.+.+|+++
T Consensus 140 ~~--~~~~~d~lViATG--s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli 212 (475)
T PRK06327 140 DE--TVITAKHVIIATG--SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTIL 212 (475)
T ss_pred CC--eEEEeCEEEEeCC--CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 21 3799999999999 6665432 221 122223322221222224589999999999999999999999999999
Q ss_pred ecCCC------cccc----cCCCC-CCCceEeeeeeEEeec
Q 024975 227 SRSVA------DETH----EKQPG-YDNMWLHSMVRTKKCS 256 (259)
Q Consensus 227 ~r~~~------~~~~----~~~~~-~~~~~~~~~v~~~~~~ 256 (259)
+|.+. +++. +.+.. ...+..++.|++++..
T Consensus 213 ~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 213 EALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTG 253 (475)
T ss_pred eCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEc
Confidence 99872 2222 22222 2344445677777643
No 38
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.89 E-value=7.9e-23 Score=171.55 Aligned_cols=194 Identities=19% Similarity=0.316 Sum_probs=116.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccccccc-cceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYK-SLRVN 72 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 72 (259)
+|||+||||||+|+++|..|.++|.+|+|+|+.. .+||+|... +|.|.+.++...... .+...
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~--------gciPsK~l~~~a~~~~~~~~~ 76 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNV--------GCVPKKLMHYAANIGSIFHHD 76 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccc--------cccchHHHHHHHHHHHHHHhH
Confidence 4899999999999999999999999999999732 489998765 666655433322111 11100
Q ss_pred cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEecee---EEEE----EEeCCCcEEEEEEe
Q 024975 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTE---VLNA----RLVESNKWKVKSRK 145 (259)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~---v~~i----~~~~~~~~~v~~~~ 145 (259)
.. .+++.. + . -....++.+++...+.+++.. +....+ |+-+ ... +.++|.+.+
T Consensus 77 ~~--~~g~~~-~------------~-~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~--~~~~v~v~~ 136 (499)
T PTZ00052 77 SQ--MYGWKT-S------------S-SFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLK--DEHTVSYGD 136 (499)
T ss_pred Hh--cCCCCC-C------------C-CcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEc--cCCEEEEee
Confidence 00 001100 0 0 011255555555544433222 111111 1111 111 234455443
Q ss_pred cCCceEEEEeCEEEEccCCCCCCccCC-CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEE
Q 024975 146 KDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH 224 (259)
Q Consensus 146 g~~~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~ 224 (259)
. +....++||+||+||| +.|..|. +||...+ ...+...... ...+++++|||+|++|+|+|..|.+.+.+||
T Consensus 137 ~-~~~~~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vt 209 (499)
T PTZ00052 137 N-SQEETITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSL-SKDPGKTLIVGASYIGLETAGFLNELGFDVT 209 (499)
T ss_pred C-CCceEEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCcEE
Confidence 2 1224799999999999 7888774 7876542 1222222111 1234789999999999999999999999999
Q ss_pred EEecCC
Q 024975 225 IASRSV 230 (259)
Q Consensus 225 ~~~r~~ 230 (259)
++.|..
T Consensus 210 li~~~~ 215 (499)
T PTZ00052 210 VAVRSI 215 (499)
T ss_pred EEEcCc
Confidence 999753
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.88 E-value=2.2e-22 Score=167.86 Aligned_cols=217 Identities=14% Similarity=0.184 Sum_probs=128.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
+|+|||+||+|+++|..|++.|.+|+|+|++ .+||+|... +|.|.+.++..................+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 72 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE--------GCMPTKSLLESAEVHDKVKKANHFGITLPNG 72 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC--------ccccchHHHHHHHHHHHHHHHHhcCccccCC
Confidence 8999999999999999999999999999996 488998765 7888776655432211111111111100000
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975 84 PFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (259)
. .......+.. .....+...+++ +..+ ++..+. .+.+.|..+++. ..
T Consensus 73 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~a~~~~---~~~v~v~~~~~~---~~ 130 (458)
T PRK06912 73 S-------------ISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK--VIQG-KASFET---DHRVRVEYGDKE---EV 130 (458)
T ss_pred C-------------CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEE-EEEEcc---CCEEEEeeCCCc---EE
Confidence 0 0001122221 222333344565 4333 333332 244555543322 46
Q ss_pred EEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC--
Q 024975 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV-- 230 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~-- 230 (259)
+.||+||+||| +.|+.|++++.... ...++... ......+++++|||+|++|+|+|..+.+.+.+|++++|.+
T Consensus 131 ~~~d~lviATG--s~p~~~p~~~~~~~--~v~~~~~~-~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 131 VDAEQFIIAAG--SEPTELPFAPFDGK--WIINSKHA-MSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred EECCEEEEeCC--CCCCCCCCCCCCCC--eEEcchHH-hCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 99999999999 67776666654321 12222221 1222235789999999999999999999999999999987
Q ss_pred ----Cccccc----CCCC-CCCceEeeeeeEEeec
Q 024975 231 ----ADETHE----KQPG-YDNMWLHSMVRTKKCS 256 (259)
Q Consensus 231 ----~~~~~~----~~~~-~~~~~~~~~v~~~~~~ 256 (259)
++++.+ .+.+ ...+..++.|++++..
T Consensus 206 l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 206 LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSY 240 (458)
T ss_pred CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEc
Confidence 222222 2222 2344445677777543
No 40
>PRK07846 mycothione reductase; Reviewed
Probab=99.88 E-value=3.1e-22 Score=166.18 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=129.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.||++|||+||+|..+|.. +.|.+|+|+|+ +.+||+|... +|.|++.++.+..................
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 69 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAADVARTIREAARLGVDAE 69 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc--------CcchhHHHHHHHHHHHHHHHHHhCCccCC
Confidence 4899999999999998876 46999999998 4689999876 88888876665432221111111110000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHH-------------HHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNF-------------AREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (259)
. .. ....++.++.... ++..+++ +..+. +..+ +..+|.+.++.
T Consensus 70 ~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a~~~-----~~~~V~v~~g~- 125 (451)
T PRK07846 70 L------------DG---VRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNID--VYRGH-ARFI-----GPKTLRTGDGE- 125 (451)
T ss_pred C------------Cc---CCHHHHHHHHHHHHHHHhccchhhhhhhhCCcE--EEEEE-EEEe-----cCCEEEECCCC-
Confidence 0 00 0112222222221 2334555 44432 2222 22455555443
Q ss_pred ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (259)
Q Consensus 149 ~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r 228 (259)
.++||+||+||| +.|+.|.+++.... ..+...........+++++|||+|++|+|+|..|.+.|.+|+++.|
T Consensus 126 ---~~~~d~lViATG--s~p~~p~i~g~~~~---~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 197 (451)
T PRK07846 126 ---EITADQVVIAAG--SRPVIPPVIADSGV---RYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNR 197 (451)
T ss_pred ---EEEeCEEEEcCC--CCCCCCCCCCcCCc---cEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence 699999999999 78999988885431 1222111111122358999999999999999999999999999999
Q ss_pred CC------CcccccCC----CCCCCceEeeeeeEEeec
Q 024975 229 SV------ADETHEKQ----PGYDNMWLHSMVRTKKCS 256 (259)
Q Consensus 229 ~~------~~~~~~~~----~~~~~~~~~~~v~~~~~~ 256 (259)
++ ++++.+.+ ....+++.++.|++++..
T Consensus 198 ~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 198 SGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred CCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEc
Confidence 87 23322221 222445556777777643
No 41
>PRK12831 putative oxidoreductase; Provisional
Probab=99.88 E-value=6.8e-22 Score=164.38 Aligned_cols=164 Identities=27% Similarity=0.434 Sum_probs=114.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+||.+.+. . .
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------i--------------------------p 184 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------I--------------------------P 184 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------C--------------------------C
Confidence 4799999999999999999999999999999998888888641 0 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+. .+ ..++..+..+.+.+.+++ +++++.+.. .+..++.. ..+.||.||+|
T Consensus 185 ~~~--------------l~-~~~~~~~~~~~~~~~gv~--i~~~~~v~~---------~v~~~~~~---~~~~~d~viiA 235 (464)
T PRK12831 185 EFR--------------LP-KETVVKKEIENIKKLGVK--IETNVVVGK---------TVTIDELL---EEEGFDAVFIG 235 (464)
T ss_pred Ccc--------------CC-ccHHHHHHHHHHHHcCCE--EEcCCEECC---------cCCHHHHH---hccCCCEEEEe
Confidence 000 01 133555556667778888 888875521 11112111 13569999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCC-------------CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r 228 (259)
||+ ..|+.+.+||.+. .+ ++....+. ......+++|+|||+|++|+|+|..+.+.|.+|++++|
T Consensus 236 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r 312 (464)
T PRK12831 236 SGA-GLPKFMGIPGENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR 312 (464)
T ss_pred CCC-CCCCCCCCCCcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence 995 2577888888653 12 11111111 11224578999999999999999999999999999999
Q ss_pred CCCc
Q 024975 229 SVAD 232 (259)
Q Consensus 229 ~~~~ 232 (259)
++..
T Consensus 313 ~~~~ 316 (464)
T PRK12831 313 RSEE 316 (464)
T ss_pred cCcc
Confidence 8743
No 42
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.88 E-value=1.8e-21 Score=162.75 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=123.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (259)
+|||+||||||+|+++|.+|++.|.+|+|+|++ .+||+|... +|.|.+.++... .+..+....... +.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~~~~~~--gi 72 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV--------GCIPSKALLRNAELAHIFTKEAKTF--GI 72 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC--------CccccHHHHhhHHHHHHHHHHHHhc--CC
Confidence 489999999999999999999999999999994 689999875 666665544332 222222111110 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
.. ........+..... ...+..+++ ...+ +..- .+.+.+.+...+ +.
T Consensus 73 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~g-~~~~---~~~~~v~v~~~~--g~ 130 (466)
T PRK07818 73 SG--------------EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKIT--EIHG-YGTF---TDANTLEVDLND--GG 130 (466)
T ss_pred Cc--------------CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEE---cCCCEEEEEecC--CC
Confidence 00 00011122222211 122222444 2221 1111 111444554433 22
Q ss_pred eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~ 229 (259)
...++||+||+||| +.|+.| ||.+. .+........... ...+++++|||+|++|+|+|..|.+.+.+|+++++.
T Consensus 131 ~~~~~~d~lViATG--s~p~~~--pg~~~-~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~ 204 (466)
T PRK07818 131 TETVTFDNAIIATG--SSTRLL--PGTSL-SENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL 204 (466)
T ss_pred eeEEEcCEEEEeCC--CCCCCC--CCCCC-CCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence 34799999999999 667653 44321 1222222211111 123589999999999999999999999999999988
Q ss_pred C------Cccccc----CCCC-CCCceEeeeeeEEeec
Q 024975 230 V------ADETHE----KQPG-YDNMWLHSMVRTKKCS 256 (259)
Q Consensus 230 ~------~~~~~~----~~~~-~~~~~~~~~v~~~~~~ 256 (259)
+ ++++.+ .+.+ ..++..++.|++++..
T Consensus 205 ~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~ 242 (466)
T PRK07818 205 DRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDN 242 (466)
T ss_pred CCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe
Confidence 7 222222 2211 2344455777777643
No 43
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.88 E-value=1.8e-21 Score=166.21 Aligned_cols=213 Identities=17% Similarity=0.225 Sum_probs=120.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceeccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (259)
.||++|||+||+|..+|..+++.|.+|+|||+. ..+||+|... +|.|++.++.... +..+........++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~--------GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV--------GCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe--------CCcchHHHHHHHHHHHHHHhccccccCC
Confidence 479999999999999999999999999999974 3699999887 9999887776543 23332211001111
Q ss_pred ec--CCCC---CccCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCce-----eEEeceeEEEEEEeCC---CcEEEEEE
Q 024975 80 FQ--AYPF---VARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQ-----VVRLHTEVLNARLVES---NKWKVKSR 144 (259)
Q Consensus 80 ~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~-----~v~~~~~v~~i~~~~~---~~~~v~~~ 144 (259)
+. .++- .............-.....+.++.+....+. ++.. .+......+.+..... +..+|...
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 11 0000 0000000000000112233333333322221 0000 0111112222222110 11223332
Q ss_pred ecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEE
Q 024975 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH 224 (259)
Q Consensus 145 ~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~ 224 (259)
.+. ..+.||+||+||| +.|..|..++... .....+..... ....+++++|||+|++|+|+|..|.+.|.+||
T Consensus 268 ~~g---~~i~ad~lIIATG--S~P~~P~~~~~~~--~~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVT 339 (659)
T PTZ00153 268 KSG---KEFKVKNIIIATG--STPNIPDNIEVDQ--KSVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGSEVV 339 (659)
T ss_pred cCC---EEEECCEEEEcCC--CCCCCCCCCCCCC--CcEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCCeEE
Confidence 111 3689999999999 7888776554332 12222222211 12235789999999999999999999999999
Q ss_pred EEecCC
Q 024975 225 IASRSV 230 (259)
Q Consensus 225 ~~~r~~ 230 (259)
++++.+
T Consensus 340 LIe~~~ 345 (659)
T PTZ00153 340 SFEYSP 345 (659)
T ss_pred EEeccC
Confidence 999987
No 44
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=149.30 Aligned_cols=201 Identities=20% Similarity=0.216 Sum_probs=158.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.|||+|||+||+|-++|.+.+|.|++.=++- .++||....+... ..|.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~I------------------------------ENfI 258 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGI------------------------------ENFI 258 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccch------------------------------hhee
Confidence 4899999999999999999999998754432 2377776543110 0111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEecCCceEEEEeCEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
..| +..+.++...|++...++.++ +....+++++++.. ++-.+|++.+|. .+.++.||
T Consensus 259 sv~--------------~teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGa----vLkaktvI 318 (520)
T COG3634 259 SVP--------------ETEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGA----VLKARTVI 318 (520)
T ss_pred ccc--------------cccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCc----eeccceEE
Confidence 122 223388999999999999999 88888999998743 256889999987 89999999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----Ccccc
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----ADETH 235 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----~~~~~ 235 (259)
+||| ...+-.++||.+.|..+....|+.++...+++|+|+|||+|+||+|.|..|+.....||++.=.+ +.-+.
T Consensus 319 lstG--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq 396 (520)
T COG3634 319 LATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQ 396 (520)
T ss_pred EecC--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHH
Confidence 9999 67788899999999999898899999989999999999999999999999999999999998777 45566
Q ss_pred cCCCCCCCceEe--eeeeEEeec
Q 024975 236 EKQPGYDNMWLH--SMVRTKKCS 256 (259)
Q Consensus 236 ~~~~~~~~~~~~--~~v~~~~~~ 256 (259)
+++...+|+.+. .+-+++.++
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~Gd 419 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKGD 419 (520)
T ss_pred HHHhcCCCcEEEecceeeEEecC
Confidence 677666666654 344444443
No 45
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.87 E-value=5e-21 Score=159.89 Aligned_cols=200 Identities=17% Similarity=0.186 Sum_probs=123.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (259)
|+|++|||+|++|+.+|..|.++|.+|+|+|+.. +||+|... +|.|.+.++... ....+.. ........
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~--------gciPsK~l~~~a~~~~~~~~-~~~~g~~~ 70 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLT--------DCVPSKTLIATAEVRTELRR-AAELGIRF 70 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccccc--------CCcchHHHHHHHHHHHHHHH-HHhCCccc
Confidence 5799999999999999999999999999999964 89999876 777777665543 2222211 11100000
Q ss_pred -----cCCCCCccCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCceeEEeceeEEEEE--EeCCCcEEEEEEecCCceE
Q 024975 81 -----QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR--LVESNKWKVKSRKKDDVVE 151 (259)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~--~~~~~~~~v~~~~g~~~~~ 151 (259)
....|... ..+. -...+...+.+.+++.+++ ++.+ ++..+. ..+ +.+.|...++ +..
T Consensus 71 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g-~~~~~~~~~~~-~~v~V~~~~g--~~~ 136 (466)
T PRK07845 71 IDDGEARVDLPAV--------NARVKALAAAQSADIRARLEREGVR--VIAG-RGRLIDPGLGP-HRVKVTTADG--GEE 136 (466)
T ss_pred ccCcccccCHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEeecccCC-CEEEEEeCCC--ceE
Confidence 00000000 0000 0012233445555666887 6554 444433 222 4556655443 224
Q ss_pred EEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 152 ~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
.+.||+||+||| +.|..|+.++... ............. ..+++++|||+|.+|+|+|..|.+.+.+|+++++.+
T Consensus 137 ~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 137 TLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred EEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 689999999999 6776554433221 1122222222211 234789999999999999999999999999999977
No 46
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.87 E-value=2.3e-21 Score=171.89 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=116.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||||||||+||..|+++|++|+|||+.+.+||...+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------------------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------------------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-------------------------------------
Confidence 4789999999999999999999999999999999999988752
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.| .|....++.....+.+.+.|++ ++.++.+-. .+++++.. ...||+||+|
T Consensus 349 -IP-------------~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG~---------dit~~~l~----~~~yDAV~LA 399 (944)
T PRK12779 349 -IP-------------EFRLPNQLIDDVVEKIKLLGGR--FVKNFVVGK---------TATLEDLK----AAGFWKIFVG 399 (944)
T ss_pred -CC-------------CCcChHHHHHHHHHHHHhhcCe--EEEeEEecc---------EEeHHHhc----cccCCEEEEe
Confidence 00 0111156666666777778988 877765421 23333211 3569999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCC--------------CC-CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEE
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IP-NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~--------------~~-~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~ 226 (259)
||+ ..|+.+.+||.+. .+. .....|. .. ....+++|+|||+|.+|+|+|..+.+.|.+|+++
T Consensus 400 tGA-~~pr~l~IpG~dl-~GV-~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv 476 (944)
T PRK12779 400 TGA-GLPTFMNVPGEHL-LGV-MSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIV 476 (944)
T ss_pred CCC-CCCCcCCCCCCcC-cCc-EEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 996 3688888888643 221 1111111 00 1225799999999999999999999999999999
Q ss_pred ecCCC
Q 024975 227 SRSVA 231 (259)
Q Consensus 227 ~r~~~ 231 (259)
+|++.
T Consensus 477 ~rr~~ 481 (944)
T PRK12779 477 YRRTK 481 (944)
T ss_pred EecCc
Confidence 99873
No 47
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=3e-21 Score=147.07 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=136.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+|.++||||-+|++.|.+.++.|.++.|+|..-.+||+|... +|.|++...+...+.........
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~--------GCVPKKvm~~~a~~~~~~~da~~------ 85 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV--------GCVPKKVMWYAADYSEEMEDAKD------ 85 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee--------ccccceeEEehhhhhHHhhhhhh------
Confidence 4899999999999999999999999999999977899999887 88888777666655544443332
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH----hCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE----FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~ 157 (259)
+.|......+..|...-..++.+...|....++ .+++ +..+ +. ...+++...|...++. ...+++++
T Consensus 86 -yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~--~i~G-~a---~f~~~~~v~V~~~d~~--~~~Ytak~ 156 (478)
T KOG0405|consen 86 -YGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVK--LIEG-RA---RFVSPGEVEVEVNDGT--KIVYTAKH 156 (478)
T ss_pred -cCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhcccccee--EEee-eE---EEcCCCceEEEecCCe--eEEEecce
Confidence 222221111112222222334444444444332 2333 2222 11 1222255667666653 34689999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+++||| +.|-+|++||.+. ...+..+.... ..+++++|+|+|++|+|+|..+...|.+++++.|.+
T Consensus 157 iLIAtG--g~p~~PnIpG~E~----gidSDgff~Le-e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~ 222 (478)
T KOG0405|consen 157 ILIATG--GRPIIPNIPGAEL----GIDSDGFFDLE-EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE 222 (478)
T ss_pred EEEEeC--CccCCCCCCchhh----ccccccccchh-hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc
Confidence 999999 8999999999764 23333333333 345899999999999999999999999999999999
No 48
>PRK09897 hypothetical protein; Provisional
Probab=99.87 E-value=1.1e-20 Score=157.69 Aligned_cols=210 Identities=18% Similarity=0.282 Sum_probs=126.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCC-C--CCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVD-P--NRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 76 (259)
|++|+||||||+|+++|.+|.+.+ .+|+|||++..+|..+.+........+... . .........+.|+.......
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 579999999999999999998864 589999999989977766542211000000 0 00011122222322211100
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
+....... .......|++|..+..|+.+.+... ++...++.+++|++++..+ +.|.+.+.++.
T Consensus 81 ---~~~~g~~~----~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~V~t~~gg-- 150 (534)
T PRK09897 81 ---LQRYGVKK----ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVMLATNQDL-- 150 (534)
T ss_pred ---HHhcCCcc----eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEEEEECCCC--
Confidence 00000000 0112457888888888887755432 3221266788999998876 67888875532
Q ss_pred eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCC--CCCCCCCCeEEEEccCcCHHHHHHHHhccc-------
Q 024975 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGFA------- 220 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~viG~G~~a~e~a~~l~~~~------- 220 (259)
..+.+|+||+|||+. .|..+. +...| ....+. .....++.+|+|+|.|+|++|++..|...+
T Consensus 151 -~~i~aD~VVLAtGh~-~p~~~~--~~~~y-----i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~ 221 (534)
T PRK09897 151 -PSETFDLAVIATGHV-WPDEEE--ATRTY-----FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDD 221 (534)
T ss_pred -eEEEcCEEEECCCCC-CCCCCh--hhccc-----cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccC
Confidence 378999999999973 332221 11111 011111 111234689999999999999999986442
Q ss_pred --------------CeEEEEecCC
Q 024975 221 --------------KEVHIASRSV 230 (259)
Q Consensus 221 --------------~~v~~~~r~~ 230 (259)
.+|++++|+.
T Consensus 222 ~~~~~l~y~~sg~~~~I~a~SRrG 245 (534)
T PRK09897 222 KQHVVFHRDNASEKLNITLMSRTG 245 (534)
T ss_pred CCcceeeecCCCCCceEEEEeCCC
Confidence 3699999999
No 49
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.86 E-value=6.3e-21 Score=158.60 Aligned_cols=210 Identities=14% Similarity=0.174 Sum_probs=126.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.||++|||+||+|..+|.. ..|.+|+++|+ ..+||+|... +|.|.+.++.+..................
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 70 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAAEVAQSIGESARLGIDAE 70 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc--------CccchHHHHHHHHHHHHHHHhhccCeeCC
Confidence 5899999999999998654 47999999998 5689999887 89998877765433222222111111000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHH------------HH---HHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQN------------FA---REFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------~~---~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (259)
... ....++.++... .. ++.+++ ++.++.+.. +.++|.+.++
T Consensus 71 ~~~---------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~------~~~~V~~~~g 127 (452)
T TIGR03452 71 IDS---------------VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV------GPRTLRTGDG 127 (452)
T ss_pred CCc---------------cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe------cCCEEEECCC
Confidence 000 000222221111 11 114565 555443222 3356666554
Q ss_pred CCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEc-ccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEE
Q 024975 147 DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS-HNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225 (259)
Q Consensus 147 ~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~ 225 (259)
. .++||+||+||| +.|..|+..+.. +....+ ....... ..+++++|||+|++|+|+|..|.+.+.+|++
T Consensus 128 ~----~~~~d~lIiATG--s~p~~p~~~~~~---~~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl 197 (452)
T TIGR03452 128 E----EITGDQIVIAAG--SRPYIPPAIADS---GVRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTI 197 (452)
T ss_pred c----EEEeCEEEEEEC--CCCCCCCCCCCC---CCEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 3 689999999999 778777633321 111221 1211111 2358999999999999999999999999999
Q ss_pred EecCC------CcccccCC----CCCCCceEeeeeeEEee
Q 024975 226 ASRSV------ADETHEKQ----PGYDNMWLHSMVRTKKC 255 (259)
Q Consensus 226 ~~r~~------~~~~~~~~----~~~~~~~~~~~v~~~~~ 255 (259)
+.|.+ ++++.+.+ .....++.+..|++++.
T Consensus 198 i~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~ 237 (452)
T TIGR03452 198 VNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQ 237 (452)
T ss_pred EEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence 99987 23333222 12234555577777764
No 50
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.85 E-value=1.8e-20 Score=155.67 Aligned_cols=160 Identities=29% Similarity=0.446 Sum_probs=112.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g------------------------------------- 175 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG------------------------------------- 175 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-------------------------------------
Confidence 4799999999999999999999999999999998888877541
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+. ...+ .++.....+.+.+.+++ ++.++.+. ..+.+.+. ...||+||+|
T Consensus 176 -ip~-----------~~~~--~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~yd~viiA 225 (449)
T TIGR01316 176 -IPE-----------FRLP--KEIVVTEIKTLKKLGVT--FRMNFLVG---------KTATLEEL-----FSQYDAVFIG 225 (449)
T ss_pred -CCC-----------ccCC--HHHHHHHHHHHHhCCcE--EEeCCccC---------CcCCHHHH-----HhhCCEEEEe
Confidence 000 0001 44445555556677888 77776431 11222221 2468999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCC--------------CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEe
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~ 227 (259)
||+ +.|+.|.+||.+. .+ .+....+. ......+++|+|||+|++|+|+|..+.+.|.+|++++
T Consensus 226 tGa-~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~ 302 (449)
T TIGR01316 226 TGA-GLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLY 302 (449)
T ss_pred CCC-CCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 995 3688888888653 22 11111110 0112356899999999999999999999999999999
Q ss_pred cCCC
Q 024975 228 RSVA 231 (259)
Q Consensus 228 r~~~ 231 (259)
|++.
T Consensus 303 ~~~~ 306 (449)
T TIGR01316 303 RRTR 306 (449)
T ss_pred ecCc
Confidence 9873
No 51
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.84 E-value=6.3e-20 Score=152.24 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=109.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
|++|+|||||++|+.+|..|++. +.+|+|+|+++.++ +.+.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~--------------------------------- 43 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANC--------------------------------- 43 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccC---------------------------------
Confidence 46899999999999999999986 57999999986542 1000
Q ss_pred ecCCCCCccCCCCCCCCCCCCCHHHHHHHH-HHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCE
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYL-QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDA 157 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~ 157 (259)
..|+... .......++..+. ..+.++.+++ ++.+++|++|+... +. |.+.+++ +....+.||+
T Consensus 44 --~lp~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~-~~--v~~~~~~~~~~~~~~yd~ 108 (438)
T PRK13512 44 --ALPYYIG--------EVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDER-QT--VTVLNRKTNEQFEESYDK 108 (438)
T ss_pred --Ccchhhc--------CccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCC-CE--EEEEECCCCcEEeeecCE
Confidence 0000000 0000111221121 2334556888 88899999998765 43 4444432 2334578999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCCceEEcccCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+|+||| +.|+.|.+++.. .......... ....+++++|||+|.+|+|+|..|.+.+.+|++++|.+
T Consensus 109 lviAtG--s~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 109 LILSPG--ASANSLGFESDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred EEECCC--CCCCCCCCCCCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 999999 777776644211 1111100000 11235899999999999999999999999999999987
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.84 E-value=3e-20 Score=163.02 Aligned_cols=157 Identities=24% Similarity=0.338 Sum_probs=107.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+||||||+|+++|+.|++.|++|+|+|+.+.+||.+.+.. +
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~I-----------------------------------P 583 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNII-----------------------------------P 583 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeec-----------------------------------c
Confidence 46899999999999999999999999999999998988876410 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+. .+ .++.....+.+.+.+++ ++.++.+ .+... .. ....+|+||+|
T Consensus 584 ~~R--------------lp--~evL~~die~l~~~GVe--~~~gt~V-di~le----------~L----~~~gYDaVILA 630 (1019)
T PRK09853 584 QFR--------------IP--AELIQHDIEFVKAHGVK--FEFGCSP-DLTVE----------QL----KNEGYDYVVVA 630 (1019)
T ss_pred ccc--------------cc--HHHHHHHHHHHHHcCCE--EEeCcee-EEEhh----------hh----eeccCCEEEEC
Confidence 000 01 33444444566667888 8888766 22211 11 13558999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCC------CCCCCCCCeEEEEccCcCHHHHHHHHhccc--CeEEEEecCC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR------IPNPFQDQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~--~~v~~~~r~~ 230 (259)
||+. .++.+.++|... + ......+. ......+++|+|||+|++|+|+|..+.+.+ .+|++++|++
T Consensus 631 TGA~-~~~~l~IpG~~~--g-V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 631 IGAD-KNGGLKLEGGNQ--N-VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred cCCC-CCCCCCCCCccC--C-ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 9963 345556666541 1 11111111 112235799999999999999999988773 4899999986
No 53
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.84 E-value=7e-20 Score=149.46 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=113.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (259)
|+++|+|||+|++|+++|..|++. ..+|+|+++.+.. .++. . ... ..
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~~-----------------~-~l~--------~~- 49 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNK-----------------P-DLS--------HV- 49 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcCc-----------------C-cCc--------HH-
Confidence 678999999999999999999886 4589999997532 0000 0 000 00
Q ss_pred eecCCCCCccCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~ 157 (259)
+. . .....++.. ...+++++.+++ ++.+++|++++... ..+.++ + ..+.||+
T Consensus 50 ----~~------------~-~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~-~----~~~~yd~ 102 (377)
T PRK04965 50 ----FS------------Q-GQRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEA---QVVKSQ-G----NQWQYDK 102 (377)
T ss_pred ----Hh------------C-CCCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCC---CEEEEC-C----eEEeCCE
Confidence 00 0 000133332 245566677888 88899999998653 345543 2 3799999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCCceEEcccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
||+||| +.+..|.++|... ......... .....+++++|||+|++|+|+|..|.+.+.+|+++++.+
T Consensus 103 LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 103 LVLATG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred EEECCC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 999999 7788888888653 111111100 111246889999999999999999999999999999987
No 54
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.83 E-value=1e-19 Score=151.74 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=112.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
++|+|||||++|+++|..|++.+ .+|+|||+++.++ +...
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~------------------------------------ 42 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC------------------------------------ 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC------------------------------------
Confidence 37999999999999999999875 5899999987542 1000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl 160 (259)
..++.. ...+....++..+..+.+.+.+++ ++.+++|++++..+ +.+.+.... ++....+.||++|+
T Consensus 43 -~~~~~~--------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~-~~~~~~~~yd~lvi 109 (444)
T PRK09564 43 -GLPYFV--------GGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN-KTITVKNLK-TGSIFNDTYDKLMI 109 (444)
T ss_pred -CCceEe--------ccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC-CEEEEEECC-CCCEEEecCCEEEE
Confidence 000000 000111123333334445567888 88899999998765 444443211 12222334999999
Q ss_pred ccCCCCCCccCCCCCCCCCCCceEEcccCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
||| +.|..|.++|... . .......+... ....+++++|+|+|++|+|+|..+.+.+.+|+++.+.+
T Consensus 110 AtG--~~~~~~~i~g~~~-~-~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 110 ATG--ARPIIPPIKNINL-E-NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCC--CCCCCCCCCCcCC-C-CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 999 7788888888653 1 12221111110 11245899999999999999999999999999999876
No 55
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.83 E-value=5e-20 Score=161.94 Aligned_cols=161 Identities=26% Similarity=0.432 Sum_probs=111.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+. . +
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------i--------------------------p 475 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------I--------------------------P 475 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------C--------------------------C
Confidence 4689999999999999999999999999999988888887651 0 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
++. .| .++.....+.+.+.+++ ++.++.+. . .+.+++. ....||+||+|
T Consensus 476 ~~r--------------lp--~~~~~~~~~~l~~~gv~--~~~~~~v~-------~--~v~~~~l----~~~~ydavvlA 524 (752)
T PRK12778 476 EFR--------------LP--KKIVDVEIENLKKLGVK--FETDVIVG-------K--TITIEEL----EEEGFKGIFIA 524 (752)
T ss_pred CCC--------------CC--HHHHHHHHHHHHHCCCE--EECCCEEC-------C--cCCHHHH----hhcCCCEEEEe
Confidence 000 11 33444445556677888 77776431 1 1222221 13569999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCC-------------CCCCCCCCeEEEEccCcCHHHHHHHHhcccCe-EEEEe
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIAS 227 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~-v~~~~ 227 (259)
||+ ..++.+.+||.+. .+. .....+. ......+++|+|||+|++|+|+|..+.+.|.+ |++++
T Consensus 525 tGa-~~~~~l~ipG~~~-~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~ 601 (752)
T PRK12778 525 SGA-GLPNFMNIPGENS-NGV-MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVY 601 (752)
T ss_pred CCC-CCCCCCCCCCCCC-CCc-EEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence 995 2578888888653 111 1111111 01123578999999999999999999999876 99999
Q ss_pred cCCC
Q 024975 228 RSVA 231 (259)
Q Consensus 228 r~~~ 231 (259)
|++.
T Consensus 602 r~~~ 605 (752)
T PRK12778 602 RRSE 605 (752)
T ss_pred ecCc
Confidence 9874
No 56
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.83 E-value=5.7e-20 Score=141.85 Aligned_cols=230 Identities=17% Similarity=0.194 Sum_probs=141.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-cccccee-ccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRV-NLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 79 (259)
.||++|||+||+|..+|...++.|++.+.+|+...+||+|... +|.|++.++... .|..++. ...+....
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv--------GcIPSKALL~nSh~yh~~q~~~~~~rGi~ 110 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV--------GCIPSKALLNNSHLYHEAQHEDFASRGID 110 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec--------cccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence 4899999999999999999999999999999999999999876 899988877754 4444443 22222222
Q ss_pred ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
.....++..... ...--.-.++..-+.....+.+++ +..+.. ++ . +.-+|.....++..+.+.++.+|
T Consensus 111 vs~~~~dl~~~~----~~k~~~vk~Lt~gi~~lfkknkV~--~~kG~g--sf-~---~p~~V~v~k~dg~~~ii~aKnIi 178 (506)
T KOG1335|consen 111 VSSVSLDLQAMM----KAKDNAVKQLTGGIENLFKKNKVT--YVKGFG--SF-L---DPNKVSVKKIDGEDQIIKAKNII 178 (506)
T ss_pred ccceecCHHHHH----HHHHHHHHHHhhHHHHHhhhcCeE--EEeeeE--ee-c---CCceEEEeccCCCceEEeeeeEE
Confidence 221111110000 000000022333333444444444 222211 11 1 23445555555566789999999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------Ccc
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADE 233 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~ 233 (259)
+||| |. ++.+||+.- ......+..-......-+++++|||+|..|.|+..-..++|.+||+++-.+ |+|
T Consensus 179 iATG--Se--V~~~PGI~I-DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~E 253 (506)
T KOG1335|consen 179 IATG--SE--VTPFPGITI-DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGE 253 (506)
T ss_pred EEeC--Cc--cCCCCCeEe-cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHH
Confidence 9999 42 334556543 233333333333333445899999999999999999999999999998887 444
Q ss_pred cc---cCCCCCCCceE--eeeeeEEeec
Q 024975 234 TH---EKQPGYDNMWL--HSMVRTKKCS 256 (259)
Q Consensus 234 ~~---~~~~~~~~~~~--~~~v~~~~~~ 256 (259)
+. ++++.+-.+++ ++.|...+..
T Consensus 254 isk~~qr~L~kQgikF~l~tkv~~a~~~ 281 (506)
T KOG1335|consen 254 ISKAFQRVLQKQGIKFKLGTKVTSATRN 281 (506)
T ss_pred HHHHHHHHHHhcCceeEeccEEEEeecc
Confidence 43 33333444444 4666655544
No 57
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=6.3e-19 Score=141.12 Aligned_cols=212 Identities=20% Similarity=0.298 Sum_probs=138.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC---CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcc-c----cccccceecc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-S----SLYKSLRVNL 73 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g---~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 73 (259)
|++|+|||+|++|+++|.+|.+.- ..|.|||+.+.+|.+..|....+....+.......+. . ..+.|+....
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 589999999999999999999862 2499999999999999987655433333333222222 1 1222333220
Q ss_pred ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh---CCc-eeEEeceeEEEEEEeCC-CcEEEEEEecCC
Q 024975 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF---GVD-QVVRLHTEVLNARLVES-NKWKVKSRKKDD 148 (259)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~ 148 (259)
. .. ........+...||+|..|..|+.+....+ +-. ...+.+++++++.+.++ ..|.+...+|+
T Consensus 81 ----~-----~~-~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~- 149 (474)
T COG4529 81 ----Q-----RY-RDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP- 149 (474)
T ss_pred ----c-----cc-CChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC-
Confidence 0 00 000012357789999999999998877654 211 13566788888887743 56888888876
Q ss_pred ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCC-ceEEcccCCCC---CCCCCCeEEEEccCcCHHHHHHHHhccc--Ce
Q 024975 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRIP---NPFQDQVVILIGHYASGLDIKRDLAGFA--KE 222 (259)
Q Consensus 149 ~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~-~~~~~~~~~~~---~~~~~~~v~viG~G~~a~e~a~~l~~~~--~~ 222 (259)
...||.+|+|||+ +.|..+. - ...+.+ .......+... ......+|+|+|+|++.+|+...|.+.| .+
T Consensus 150 ---~~~ad~~Vlatgh-~~~~~~~-~-~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~ 223 (474)
T COG4529 150 ---SEIADIIVLATGH-SAPPADP-A-ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGP 223 (474)
T ss_pred ---eeeeeEEEEeccC-CCCCcch-h-hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccc
Confidence 8899999999997 3333222 1 111111 11222222211 1234567999999999999999998875 46
Q ss_pred EEEEecCC
Q 024975 223 VHIASRSV 230 (259)
Q Consensus 223 v~~~~r~~ 230 (259)
||+++|+.
T Consensus 224 It~iSRrG 231 (474)
T COG4529 224 ITAISRRG 231 (474)
T ss_pred eEEEeccc
Confidence 99999999
No 58
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.83 E-value=1.2e-19 Score=162.39 Aligned_cols=165 Identities=22% Similarity=0.343 Sum_probs=113.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+||||||+||++|..|+++|++|+|||+.+.+||...+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------------------- 472 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------------------- 472 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-------------------------------------
Confidence 3789999999999999999999999999999998888776541
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.|. |....++.....+.+.+.|++ +++++.+ + ..+.+.... ....||.||+|
T Consensus 473 -ip~-------------~rl~~e~~~~~~~~l~~~Gv~--~~~~~~v-g------~~~~~~~l~-----~~~~yDaViIA 524 (1006)
T PRK12775 473 -IPS-------------FRLPRDIIDREVQRLVDIGVK--IETNKVI-G------KTFTVPQLM-----NDKGFDAVFLG 524 (1006)
T ss_pred -CCc-------------cCCCHHHHHHHHHHHHHCCCE--EEeCCcc-C------CccCHHHHh-----hccCCCEEEEe
Confidence 010 000155666666677788998 8877543 1 112211100 02458999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccC--------------CCCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEE
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY--------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~ 226 (259)
||+ ..|+.+.+||... .+ +.....| .......+++|+|||+|++|+|+|..+.+.|. .|+++
T Consensus 525 TGa-~~pr~l~IpG~~l-~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv 601 (1006)
T PRK12775 525 VGA-GAPTFLGIPGEFA-GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCV 601 (1006)
T ss_pred cCC-CCCCCCCCCCcCC-CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 995 2578888888543 22 1222111 11122467999999999999999999998875 58999
Q ss_pred ecCCCccc
Q 024975 227 SRSVADET 234 (259)
Q Consensus 227 ~r~~~~~~ 234 (259)
+|+...++
T Consensus 602 ~rr~~~em 609 (1006)
T PRK12775 602 YRRSEAEA 609 (1006)
T ss_pred eecCcccC
Confidence 99874443
No 59
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.83 E-value=5.4e-20 Score=143.77 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=120.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc---c---ccccccceeccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV---H---SSLYKSLRVNLP 74 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~ 74 (259)
+++||+||||||+||+||..+.++|.+|+|||+.+.+|.........+++.++..+...++ + ..+++.+....+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 4689999999999999999999999999999999999877766666666665555421111 1 223444445555
Q ss_pred cccceecCCCCCccCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975 75 RELMGFQAYPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (259)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (259)
++...|.+-..... ..+...+.||. ...+.+.+...+++.+++ ++.+++|.+++..+ ..+.+.+.++.
T Consensus 82 ~d~i~~~e~~Gi~~--~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~-~~f~l~t~~g~---- 152 (408)
T COG2081 82 EDFIDWVEGLGIAL--KEEDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDD-SGFRLDTSSGE---- 152 (408)
T ss_pred HHHHHHHHhcCCee--EEccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecC-ceEEEEcCCCC----
Confidence 55544432221111 11355677775 478899999999999999 99999999999986 78999999875
Q ss_pred EEEeCEEEEccCCCCCCcc
Q 024975 152 EETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 152 ~~~ad~VIlAtG~~s~~~~ 170 (259)
.+.+|.+|+|||..|.|++
T Consensus 153 ~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 153 TVKCDSLILATGGKSWPKL 171 (408)
T ss_pred EEEccEEEEecCCcCCCCC
Confidence 7999999999998888865
No 60
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.82 E-value=8.9e-20 Score=152.20 Aligned_cols=159 Identities=28% Similarity=0.434 Sum_probs=111.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+||||||+|+++|..|.+.|++|+|+|+.+.+||.+.+.
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g------------------------------------- 182 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG------------------------------------- 182 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc-------------------------------------
Confidence 4789999999999999999999999999999998888776531
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+. ...+ .++..+..+.+.+.+++ ++.++.+.. .+.+++ ....||+||+|
T Consensus 183 -ip~-----------~~~~--~~~~~~~~~~l~~~gv~--~~~~~~v~~---------~v~~~~-----~~~~~d~vvlA 232 (457)
T PRK11749 183 -IPE-----------FRLP--KDIVDREVERLLKLGVE--IRTNTEVGR---------DITLDE-----LRAGYDAVFIG 232 (457)
T ss_pred -CCC-----------ccCC--HHHHHHHHHHHHHcCCE--EEeCCEECC---------ccCHHH-----HHhhCCEEEEc
Confidence 000 0001 45666666777778888 877766521 111111 12679999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCC--------CCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV 230 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~ 230 (259)
||.. .++.+.++|... .+ +.....+.. .....+++|+|||+|.+|+|+|..+.+.+. +|++++|++
T Consensus 233 tGa~-~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 233 TGAG-LPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred cCCC-CCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 9952 466677777643 22 121111110 112257899999999999999999999876 899999976
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.81 E-value=1.7e-19 Score=155.83 Aligned_cols=159 Identities=28% Similarity=0.457 Sum_probs=109.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+||+|+++|..|++.|++|+|||+.+.+||.+.+. ..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------ip-------------------------- 237 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------IP-------------------------- 237 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------CC--------------------------
Confidence 3689999999999999999999999999999999999887652 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+ ..+ .++.....+.+.+.|++ +++++.+ +.. +..+.. ...||.||+|
T Consensus 238 ~~--------------~~~--~~~~~~~~~~l~~~Gv~--i~~~~~v-~~d--------v~~~~~-----~~~~DaVilA 285 (652)
T PRK12814 238 RF--------------RLP--ESVIDADIAPLRAMGAE--FRFNTVF-GRD--------ITLEEL-----QKEFDAVLLA 285 (652)
T ss_pred CC--------------CCC--HHHHHHHHHHHHHcCCE--EEeCCcc-cCc--------cCHHHH-----HhhcCEEEEE
Confidence 00 011 44445555666677888 7777643 111 111111 2349999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCC-----CCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV 230 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~ 230 (259)
||+. .+..+.+||.+. .+. .....+. ......+++|+|||+|++|+|+|..+.+.+. +|++++|++
T Consensus 286 tGa~-~~~~~~ipG~~~-~gv-~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 286 VGAQ-KASKMGIPGEEL-PGV-ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred cCCC-CCCCCCCCCcCc-CCc-EeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 9952 334567777543 221 1111111 1223467999999999999999999998875 699999987
No 62
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.81 E-value=7.2e-19 Score=145.40 Aligned_cols=160 Identities=23% Similarity=0.295 Sum_probs=107.0
Q ss_pred CCeEEEECCChHHHHHHHHHHH--cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~--~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
.++|+||||||+|++||..|++ .|++|+|||+.+.+||.+.+. ..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g---------va------------------------ 72 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSG---------VA------------------------ 72 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeec---------cC------------------------
Confidence 4689999999999999999997 699999999999999887752 00
Q ss_pred ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
+.++.-..+...+.+.+...+++ ++.+..+- . .+.++. ....||.||
T Consensus 73 -----------------P~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg-------~--dvtl~~-----L~~~yDaVI 119 (491)
T PLN02852 73 -----------------PDHPETKNVTNQFSRVATDDRVS--FFGNVTLG-------R--DVSLSE-----LRDLYHVVV 119 (491)
T ss_pred -----------------CCcchhHHHHHHHHHHHHHCCeE--EEcCEEEC-------c--cccHHH-----HhhhCCEEE
Confidence 01111144555666666666666 55554431 1 122222 124699999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceEEcccC----------CC--CCCCCCCeEEEEccCcCHHHHHHHHhcc--------
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNY----------RI--PNPFQDQVVILIGHYASGLDIKRDLAGF-------- 219 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~----------~~--~~~~~~~~v~viG~G~~a~e~a~~l~~~-------- 219 (259)
+|||+. .++.+.+||.+. .+ .+....+ .. .....+++|+|||+|++|+|+|..|.+.
T Consensus 120 lAtGa~-~~~~l~IpG~d~-~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~td 196 (491)
T PLN02852 120 LAYGAE-SDRRLGIPGEDL-PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTD 196 (491)
T ss_pred EecCCC-CCCCCCCCCCCC-CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccccccc
Confidence 999952 346677887543 11 1111111 00 0113578999999999999999998764
Q ss_pred ------------c-CeEEEEecCC
Q 024975 220 ------------A-KEVHIASRSV 230 (259)
Q Consensus 220 ------------~-~~v~~~~r~~ 230 (259)
+ .+|+++.|+.
T Consensus 197 i~~~~l~~l~~~~~~~V~iv~RRg 220 (491)
T PLN02852 197 IAEHALEALRGSSVRKVYLVGRRG 220 (491)
T ss_pred ccHHHHHHHhhCCCCEEEEEEcCC
Confidence 3 5799999999
No 63
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.81 E-value=3.1e-19 Score=146.51 Aligned_cols=168 Identities=13% Similarity=0.176 Sum_probs=107.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
+++|+|||||++|+++|..|++.+. +|+|+++.+... +. +......+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~-----------------r~~l~~~~~~-------- 53 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YE-----------------RPPLSKSMLL-------- 53 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CC-----------------CCCCCHHHHC--------
Confidence 4689999999999999999999876 799999875331 00 0000000000
Q ss_pred ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
.+... .....+ .+...+.+++ ++.++.|+.+.... ..+.+.++. .+.||+||
T Consensus 54 ---~~~~~-------~~~~~~---------~~~~~~~~i~--~~~g~~V~~id~~~---~~v~~~~g~----~~~yd~LV 105 (396)
T PRK09754 54 ---EDSPQ-------LQQVLP---------ANWWQENNVH--LHSGVTIKTLGRDT---RELVLTNGE----SWHWDQLF 105 (396)
T ss_pred ---CCCcc-------ccccCC---------HHHHHHCCCE--EEcCCEEEEEECCC---CEEEECCCC----EEEcCEEE
Confidence 00000 000000 1223356888 88888999988653 456666554 79999999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceEEcccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+||| +.++.+++++... . .........+ .....+++++|||+|++|+|+|..|.+.+.+|+++++.+
T Consensus 106 iATG--s~~~~~p~~~~~~-~-~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 106 IATG--AAARPLPLLDALG-E-RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred EccC--CCCCCCCCCCcCC-C-CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 9999 6776655544321 1 1111110100 111246899999999999999999999999999999877
No 64
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.81 E-value=4.6e-19 Score=156.33 Aligned_cols=157 Identities=24% Similarity=0.331 Sum_probs=104.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+||||||+|++||+.|++.|++|+|||+.+.+||.+.+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~------------------------------------- 579 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI------------------------------------- 579 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-------------------------------------
Confidence 3689999999999999999999999999999999898887642
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.|. ...+ .+......+.+...|++ ++++... ...+ ... ....+|+||+|
T Consensus 580 -IP~-----------~rlp--~e~l~~~ie~l~~~GVe--~~~g~~~---------d~~v--e~l----~~~gYDaVIIA 628 (1012)
T TIGR03315 580 -IPE-----------FRIS--AESIQKDIELVKFHGVE--FKYGCSP---------DLTV--AEL----KNQGYKYVILA 628 (1012)
T ss_pred -ccc-----------cCCC--HHHHHHHHHHHHhcCcE--EEEeccc---------ceEh--hhh----hcccccEEEEC
Confidence 000 0001 33334444555567887 7665320 1111 111 13568999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCC----C--CCCCCCCeEEEEccCcCHHHHHHHHhcc-c-CeEEEEecCC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR----I--PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSV 230 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~----~--~~~~~~~~v~viG~G~~a~e~a~~l~~~-~-~~v~~~~r~~ 230 (259)
||++ .++.+.++|... .......+. . .....+++|+|||+|++|+|+|..+.+. | .+|++++|++
T Consensus 629 TGA~-~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 629 IGAW-KHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCCC-CCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 9963 344455666432 111111111 1 1223579999999999999999998876 5 4799999987
No 65
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.81 E-value=2.7e-19 Score=157.41 Aligned_cols=169 Identities=17% Similarity=0.228 Sum_probs=114.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (259)
+++|||||+|++|+.+|..|.++ +.+|+||++.+.+. +.+ ..+...+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r-----------------~~L~~~~-------- 53 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDR-----------------VHLSSYF-------- 53 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccC-----------------CcchHhH--------
Confidence 35899999999999999999865 47999999987542 100 0000000
Q ss_pred ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~ 157 (259)
... ...++.....+...+.+++ ++.+++|++++... ..|.+.++. .+.||+
T Consensus 54 ------~~~--------------~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~~---~~V~~~~G~----~i~yD~ 104 (847)
T PRK14989 54 ------SHH--------------TAEELSLVREGFYEKHGIK--VLVGERAITINRQE---KVIHSSAGR----TVFYDK 104 (847)
T ss_pred ------cCC--------------CHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCCC---cEEEECCCc----EEECCE
Confidence 000 0022323334455567898 88899999987643 456666554 799999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCCceEEcccCC---CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
||+||| +.|..|.+||.+...-......... ......+++++|||+|++|+|+|..|.+.+.+|+++++.+
T Consensus 105 LVIATG--s~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~ 178 (847)
T PRK14989 105 LIMATG--SYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178 (847)
T ss_pred EEECCC--CCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 999999 7899999998764211111111100 0011245889999999999999999999999999999987
No 66
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.5e-19 Score=133.21 Aligned_cols=202 Identities=20% Similarity=0.314 Sum_probs=132.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CC-------cCceeeeCCCCCCCCCCCCCCCCCccccccccceecc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQ-------VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~-------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (259)
.||.+|||||-+||+||.+.+..|.+|.++|-- +. +||+|... +|.|++...++.+.-.....+
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNV--------GCIPKKLMHQAallG~al~da 90 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNV--------GCIPKKLMHQAALLGEALHDA 90 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeec--------ccccHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999863 11 25666654 777766554443322211111
Q ss_pred ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEece-eEEEEEEeCC--CcEEEEEEecCCce
Q 024975 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHT-EVLNARLVES--NKWKVKSRKKDDVV 150 (259)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~-~v~~i~~~~~--~~~~v~~~~g~~~~ 150 (259)
.. +.|... +...-+..+.+.+..+......+.--++.++. +|.-+..-.. +..++...+.++..
T Consensus 91 ~k-------yGW~~~------e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~ 157 (503)
T KOG4716|consen 91 RK-------YGWNVD------EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKE 157 (503)
T ss_pred Hh-------hCCCCc------cccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCce
Confidence 11 112111 11222344778888888777665442233322 2222221111 34556666655666
Q ss_pred EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..++|+.+++||| ..|+.|++||..++ ...+ +.....++.+-+.+|+|+|+.|.|.|..|...|.+|+++.|+=
T Consensus 158 ~~~ta~~fvIatG--~RPrYp~IpG~~Ey---~ITS-DDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI 231 (503)
T KOG4716|consen 158 RFLTAENFVIATG--LRPRYPDIPGAKEY---GITS-DDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI 231 (503)
T ss_pred EEeecceEEEEec--CCCCCCCCCCceee---eecc-cccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe
Confidence 7899999999999 89999999997763 2222 2222333444568999999999999999999999999999987
No 67
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.80 E-value=5.1e-18 Score=152.67 Aligned_cols=199 Identities=17% Similarity=0.149 Sum_probs=123.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+||+||||||+||++|..|.+.|.+|+|+|+++.+||.+.....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~----------------------------------- 207 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE----------------------------------- 207 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc-----------------------------------
Confidence 369999999999999999999999999999999989887754200
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEE--------ec-C-Cce
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSR--------KK-D-DVV 150 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~--------~g-~-~~~ 150 (259)
..+. .+..++...+.+.+... +++ ++.+++|.++.... ....+... .+ . ...
T Consensus 208 ~~~g--------------~~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~-~v~~v~~~~~~~~~~~~~~~~~~~ 270 (985)
T TIGR01372 208 TIDG--------------KPAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHN-TVGALERVTDHLDAPPKGVPRERL 270 (985)
T ss_pred ccCC--------------ccHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCC-eEEEEEEeeeccccccCCccccce
Confidence 0000 01134433344444444 477 88888888875321 11111100 00 0 112
Q ss_pred EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEc--ccCCC-CCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEE
Q 024975 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS--HNYRI-PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIA 226 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~--~~~~~-~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~ 226 (259)
..+.++.||+||| +.++.|.++|.+. ++..... ..+.. ....++++++|+|+|.+++|+|..|.+.| ..|+++
T Consensus 271 ~~i~a~~VILATG--a~~r~~pipG~~~-pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv 347 (985)
T TIGR01372 271 WRIRAKRVVLATG--AHERPLVFANNDR-PGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAII 347 (985)
T ss_pred EEEEcCEEEEcCC--CCCcCCCCCCCCC-CCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEE
Confidence 3689999999999 6788888888543 2222110 11111 12246799999999999999999999998 457888
Q ss_pred ecCC--CcccccCCCCC-CCceEeeeeeEEee
Q 024975 227 SRSV--ADETHEKQPGY-DNMWLHSMVRTKKC 255 (259)
Q Consensus 227 ~r~~--~~~~~~~~~~~-~~~~~~~~v~~~~~ 255 (259)
.+.+ .+.+.+.+.+. ..+..++.|+++++
T Consensus 348 ~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g 379 (985)
T TIGR01372 348 DARADVSPEARAEARELGIEVLTGHVVAATEG 379 (985)
T ss_pred ccCcchhHHHHHHHHHcCCEEEcCCeEEEEec
Confidence 7765 22333333221 23333455555543
No 68
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.79 E-value=2.5e-18 Score=138.99 Aligned_cols=171 Identities=27% Similarity=0.359 Sum_probs=110.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+|++|+++|..|++.|.+++++|+.+.+||.+....
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~------------------------------------ 61 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI------------------------------------ 61 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC------------------------------------
Confidence 36899999999999999999999999999999988887665310
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE---eCCCcEEEEEEecCCceEEEEeCEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---VESNKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~---~~~~~~~v~~~~g~~~~~~~~ad~V 158 (259)
+ ...++ ...+...+.++ .+.+++ ++.++.+..+.. .....+.......++ ..+.||+|
T Consensus 62 --~-----------~~~~~-~~~~~~~~~~l-~~~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~l 122 (352)
T PRK12770 62 --P-----------EFRIP-IERVREGVKEL-EEAGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLEE--LVKKYDAV 122 (352)
T ss_pred --c-----------ccccC-HHHHHHHHHHH-HhCCeE--EecCcEEeeccccccccccccccccCCHHH--HHhhCCEE
Confidence 0 00001 13344444444 445887 788877765432 111223222111110 13689999
Q ss_pred EEccCCCCCCccCCCCCCCCCCCceEEcc-------c----CCCC---CCCCCCeEEEEccCcCHHHHHHHHhcccCe-E
Q 024975 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH-------N----YRIP---NPFQDQVVILIGHYASGLDIKRDLAGFAKE-V 223 (259)
Q Consensus 159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~-------~----~~~~---~~~~~~~v~viG~G~~a~e~a~~l~~~~~~-v 223 (259)
|+|||.+ .+..|.+||.+.. + +.... . +... ....+++++|+|+|++|+|+|..|...+.+ |
T Consensus 123 viAtGs~-~~~~~~ipg~~~~-~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V 199 (352)
T PRK12770 123 LIATGTW-KSRKLGIPGEDLP-G-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV 199 (352)
T ss_pred EEEeCCC-CCCcCCCCCcccc-C-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 9999942 4677888876531 1 11110 0 0011 122368999999999999999999888876 9
Q ss_pred EEEecCC
Q 024975 224 HIASRSV 230 (259)
Q Consensus 224 ~~~~r~~ 230 (259)
+++.|++
T Consensus 200 tvi~~~~ 206 (352)
T PRK12770 200 YLAYRRT 206 (352)
T ss_pred EEEeecc
Confidence 9999876
No 69
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.79 E-value=4.2e-19 Score=141.89 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=125.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (259)
++++|||||||.+|+.+|..|.+.. .+|+++|+.+..- +..+......
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl---------------------------~~plL~eva~--- 51 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL---------------------------FTPLLYEVAT--- 51 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc---------------------------cchhhhhhhc---
Confidence 4688999999999999999999975 8999999986320 0000000000
Q ss_pred eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~ 157 (259)
...+..++.--++..+...+ ++ ....+|++|+.+. -+|.+.++. .+.||+
T Consensus 52 -------------------g~l~~~~i~~p~~~~~~~~~~v~---~~~~~V~~ID~~~---k~V~~~~~~----~i~YD~ 102 (405)
T COG1252 52 -------------------GTLSESEIAIPLRALLRKSGNVQ---FVQGEVTDIDRDA---KKVTLADLG----EISYDY 102 (405)
T ss_pred -------------------CCCChhheeccHHHHhcccCceE---EEEEEEEEEcccC---CEEEeCCCc----cccccE
Confidence 00011333334455554333 44 4567899999865 456666533 799999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCCceEEccc-----------CCCCCCCCC----CeEEEEccCcCHHHHHHHHhcccC-
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHN-----------YRIPNPFQD----QVVILIGHYASGLDIKRDLAGFAK- 221 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~----~~v~viG~G~~a~e~a~~l~~~~~- 221 (259)
+|+|+| +.+..+.+||..++........+ |......+. .+++|+|+|++|+|+|.+|.+...
T Consensus 103 LVvalG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~ 180 (405)
T COG1252 103 LVVALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHR 180 (405)
T ss_pred EEEecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHH
Confidence 999999 88999999997765322111111 111111111 379999999999999999975522
Q ss_pred ------------eEEEEecCC------Ccccc---cCCCCCCCce--EeeeeeEEeecc
Q 024975 222 ------------EVHIASRSV------ADETH---EKQPGYDNMW--LHSMVRTKKCSR 257 (259)
Q Consensus 222 ------------~v~~~~r~~------~~~~~---~~~~~~~~~~--~~~~v~~~~~~~ 257 (259)
+|+++++.+ ++++. ++.+++.+++ .++.|++++.+.
T Consensus 181 l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~ 239 (405)
T COG1252 181 LLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG 239 (405)
T ss_pred HhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc
Confidence 799999999 23332 2234444444 568899888764
No 70
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.78 E-value=3.2e-18 Score=148.45 Aligned_cols=160 Identities=26% Similarity=0.391 Sum_probs=107.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+||+||++|..|++.|++|+|||+.+.+||.+.+. ..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------ip-------------------------- 371 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------IP-------------------------- 371 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------CC--------------------------
Confidence 4689999999999999999999999999999999998887651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+. .+ .++.....+.+.+.|++ ++.++.|.. . +.... ....||.||+|
T Consensus 372 ~~~--------------l~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~------~---i~~~~-----~~~~~DavilA 419 (654)
T PRK12769 372 AFK--------------LD--KSLLARRREIFSAMGIE--FELNCEVGK------D---ISLES-----LLEDYDAVFVG 419 (654)
T ss_pred Ccc--------------CC--HHHHHHHHHHHHHCCeE--EECCCEeCC------c---CCHHH-----HHhcCCEEEEe
Confidence 000 01 44455555666677888 887776521 0 11111 02469999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEE-------------cccCCC-C-CCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEE
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMH-------------SHNYRI-P-NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI 225 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~-------------~~~~~~-~-~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~ 225 (259)
||++ .++.+.+++... .|.... ...+.. . ....+++|+|||+|.+|+|+|..+.+.+. +|++
T Consensus 420 tGa~-~~~~l~i~g~~~-~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~ 497 (654)
T PRK12769 420 VGTY-RSMKAGLPNEDA-PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTC 497 (654)
T ss_pred CCCC-CCCCCCCCCCCC-CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 9963 344556666543 121100 000000 0 12357899999999999999999888874 7999
Q ss_pred EecCC
Q 024975 226 ASRSV 230 (259)
Q Consensus 226 ~~r~~ 230 (259)
++|++
T Consensus 498 i~~~~ 502 (654)
T PRK12769 498 AYRRD 502 (654)
T ss_pred eEecC
Confidence 99986
No 71
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.78 E-value=5.6e-18 Score=141.29 Aligned_cols=159 Identities=26% Similarity=0.391 Sum_probs=109.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+||+|+++|..|++.|.+|+|+|+.+.+||.+.+.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g------------------------------------- 183 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG------------------------------------- 183 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-------------------------------------
Confidence 3689999999999999999999999999999999888876541
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.|. ...+ .++.....+.+.+.|++ ++.+++|..- +..++ ....+|.||+|
T Consensus 184 -ip~-----------~~~~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~~---------~~~~~-----~~~~~D~vilA 233 (467)
T TIGR01318 184 -IPS-----------FKLD--KAVLSRRREIFTAMGIE--FHLNCEVGRD---------ISLDD-----LLEDYDAVFLG 233 (467)
T ss_pred -Ccc-----------ccCC--HHHHHHHHHHHHHCCCE--EECCCEeCCc---------cCHHH-----HHhcCCEEEEE
Confidence 000 0001 45556666777788998 8888766321 11111 12469999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcc-----------cC---C--CCCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEE
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSH-----------NY---R--IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVH 224 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~-----------~~---~--~~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~ 224 (259)
||.. .+..+.++|.+. .+.. ... .. . ......+++++|+|+|.+|+|+|..+.+.+ .+||
T Consensus 234 tGa~-~~~~~~i~g~~~-~gV~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vt 310 (467)
T TIGR01318 234 VGTY-RSMRGGLPGEDA-PGVL-QALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVT 310 (467)
T ss_pred eCCC-CCCcCCCCCcCC-CCcE-EHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 9952 223456676543 1211 100 00 0 001235789999999999999999998887 4799
Q ss_pred EEecCC
Q 024975 225 IASRSV 230 (259)
Q Consensus 225 ~~~r~~ 230 (259)
+++|++
T Consensus 311 vv~r~~ 316 (467)
T TIGR01318 311 CAYRRD 316 (467)
T ss_pred EEEecC
Confidence 999986
No 72
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.78 E-value=1.8e-18 Score=152.22 Aligned_cols=165 Identities=16% Similarity=0.239 Sum_probs=112.6
Q ss_pred EEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 5 VAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 5 v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
|||||+|++|+.+|..|++. +.+|+|||+.+.++ +.+. .+ ..+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r~-----------------~L-~~~l~---------- 48 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNRI-----------------LL-SSVLQ---------- 48 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----cccc-----------------cc-cHHHC----------
Confidence 68999999999999999875 46999999987552 1000 00 00000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
-. ...+++.....+.+.+.+++ ++.+++|++++... +.|.+.++. .+.||+||+|
T Consensus 49 -g~---------------~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~~---k~V~~~~g~----~~~yD~LVlA 103 (785)
T TIGR02374 49 -GE---------------ADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTDQ---KQVITDAGR----TLSYDKLILA 103 (785)
T ss_pred -CC---------------CCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECCC---CEEEECCCc----EeeCCEEEEC
Confidence 00 00022222223444567898 89999999998653 566776654 7999999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
|| +.|..|++||.+.. +. +......+ .....+++++|||+|++|+|+|..|.+.|.+|+++++.+
T Consensus 104 TG--s~p~~p~ipG~~~~-~v-~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 104 TG--SYPFILPIPGADKK-GV-YVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CC--CCcCCCCCCCCCCC-CE-EEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 99 78899999987642 21 11111000 011245889999999999999999999999999999887
No 73
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.77 E-value=6e-18 Score=146.17 Aligned_cols=160 Identities=25% Similarity=0.367 Sum_probs=109.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+||+|+++|..|++.|++|+|||+.+.+||.+.+. ..+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------ip~------------------------- 355 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------IPP------------------------- 355 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------CCc-------------------------
Confidence 4789999999999999999999999999999999999888752 110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+ ..+ ..+.....+.+.+.|++ +++++++.. + +.++. ....+|.|++|
T Consensus 356 -~--------------~l~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~---~------~~~~~-----l~~~~DaV~la 402 (639)
T PRK12809 356 -F--------------KLD--KTVLSQRREIFTAMGID--FHLNCEIGR---D------ITFSD-----LTSEYDAVFIG 402 (639)
T ss_pred -c--------------cCC--HHHHHHHHHHHHHCCeE--EEcCCccCC---c------CCHHH-----HHhcCCEEEEe
Confidence 0 011 45555556677788988 888876531 0 11111 12468999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEE----------cccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEE
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMH----------SHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHI 225 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~----------~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~ 225 (259)
||++ .+..+.++|.+. .+...- ...... .....+++++|+|+|.+++|.+..+.+.| .+||+
T Consensus 403 tGa~-~~~~~~i~g~~~-~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~ 480 (639)
T PRK12809 403 VGTY-GMMRADLPHEDA-PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTC 480 (639)
T ss_pred CCCC-CCCCCCCCCCcc-CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 9963 344566676543 222110 000000 11235789999999999999999988887 58999
Q ss_pred EecCC
Q 024975 226 ASRSV 230 (259)
Q Consensus 226 ~~r~~ 230 (259)
++|++
T Consensus 481 v~rr~ 485 (639)
T PRK12809 481 AYRRD 485 (639)
T ss_pred eeecC
Confidence 99987
No 74
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.77 E-value=7.6e-19 Score=145.20 Aligned_cols=199 Identities=15% Similarity=0.165 Sum_probs=118.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+++|||||||++|+.+|..|.+.+.+|+|||+.+..- +. .+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~----~~-----------------------~~------------ 50 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML----FT-----------------------PL------------ 50 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc----hh-----------------------hh------------
Confidence 5799999999999999999987778999999975320 00 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC----CceEEEEeCE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA 157 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~~ad~ 157 (259)
.+... ...+ ..+++..-+...+...+++ +...+|++|+..+ +.+.+...+.+ .....+.||+
T Consensus 51 -l~~~~--------~g~~-~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~-~~v~~~~~~~~~~~~~~g~~i~yD~ 116 (424)
T PTZ00318 51 -LPQTT--------TGTL-EFRSICEPVRPALAKLPNR---YLRAVVYDVDFEE-KRVKCGVVSKSNNANVNTFSVPYDK 116 (424)
T ss_pred -HHHhc--------ccCC-ChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCC-CEEEEecccccccccCCceEecCCE
Confidence 00000 0000 0033333445555555654 4567999998765 55555321110 1113799999
Q ss_pred EEEccCCCCCCccCCCCCCCCCC--CceEEc-c--------cCCCC---C-----CCCCCeEEEEccCcCHHHHHHHHhc
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWP--GKQMHS-H--------NYRIP---N-----PFQDQVVILIGHYASGLDIKRDLAG 218 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~--~~~~~~-~--------~~~~~---~-----~~~~~~v~viG~G~~a~e~a~~l~~ 218 (259)
+|+||| +.+..+.+||..... ...... . .+... . ....++++|||+|++|+|+|.+|.+
T Consensus 117 LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~ 194 (424)
T PTZ00318 117 LVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD 194 (424)
T ss_pred EEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence 999999 788888888865421 000000 0 00000 0 0122589999999999999999975
Q ss_pred --------------ccCeEEEEecCCC------cccccC---CCCCCCce--EeeeeeEEee
Q 024975 219 --------------FAKEVHIASRSVA------DETHEK---QPGYDNMW--LHSMVRTKKC 255 (259)
Q Consensus 219 --------------~~~~v~~~~r~~~------~~~~~~---~~~~~~~~--~~~~v~~~~~ 255 (259)
.+.+|+++++.+. +++.+. .+++.+++ .++.|+++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~ 256 (424)
T PTZ00318 195 FFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD 256 (424)
T ss_pred HHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC
Confidence 2578999999862 122211 12333444 4577777754
No 75
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.77 E-value=3.4e-18 Score=143.01 Aligned_cols=159 Identities=25% Similarity=0.418 Sum_probs=106.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+||+|+++|..|++.|.+|+|||+.+.+||.+.+. ..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------ip-------------------------- 187 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------IP-------------------------- 187 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------CC--------------------------
Confidence 3689999999999999999999999999999998888776541 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+ ..+ .++.....+.+.+.+++ +++++.+.. .. .... ....||.||+|
T Consensus 188 ~~--------------~~~--~~~~~~~~~~~~~~gv~--~~~~~~v~~-~~--------~~~~-----~~~~~d~vvlA 235 (471)
T PRK12810 188 DF--------------KLE--KEVIDRRIELMEAEGIE--FRTNVEVGK-DI--------TAEE-----LLAEYDAVFLG 235 (471)
T ss_pred cc--------------cCC--HHHHHHHHHHHHhCCcE--EEeCCEECC-cC--------CHHH-----HHhhCCEEEEe
Confidence 00 001 34455555566778888 887765521 10 0010 12479999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccC-------------CCCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEe
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS 227 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~ 227 (259)
||.. .++.+.++|.+. .+. .....+ .......+++|+|||+|++|+|+|..+.+.+. +|+.+.
T Consensus 236 tGa~-~~~~l~ipG~~~-~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 236 TGAY-KPRDLGIPGRDL-DGV-HFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred cCCC-CCCcCCCCCccC-CCc-EEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 9952 366677787543 221 111100 11123457899999999999999998877764 788766
Q ss_pred cCC
Q 024975 228 RSV 230 (259)
Q Consensus 228 r~~ 230 (259)
+.+
T Consensus 313 ~~~ 315 (471)
T PRK12810 313 IMP 315 (471)
T ss_pred ccC
Confidence 554
No 76
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.75 E-value=4e-19 Score=144.28 Aligned_cols=153 Identities=29% Similarity=0.404 Sum_probs=85.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC--------ceeeeCC-CCC-CCCCCC-CCCCCCcccccccccee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTS-ETE-SDPLGV-DPNRYPVHSSLYKSLRV 71 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g--------g~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 71 (259)
|||+||||||+||+||..|++.|.+|+|+|+++.+| |.|..++ ... ...... .....+ ....+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f----~~~~l~~ 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKF----LKSALKR 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTC----THHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHH----HHHHHhc
Confidence 799999999999999999999999999999999986 5565543 111 000000 000011 1112222
Q ss_pred ccccccceec-C--CCCCccCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975 72 NLPRELMGFQ-A--YPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (259)
Q Consensus 72 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~ 145 (259)
..+.+...|. + .+... ..+.+.||. ..++...|...+.+.+++ ++++++|.++...+++.|.|.+++
T Consensus 77 f~~~d~~~ff~~~Gv~~~~-----~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~ 149 (409)
T PF03486_consen 77 FSPEDLIAFFEELGVPTKI-----EEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKN 149 (409)
T ss_dssp S-HHHHHHHHHHTT--EEE------STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETT
T ss_pred CCHHHHHHHHHhcCCeEEE-----cCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccC
Confidence 2222222221 1 11111 123455553 467888999999999999 999999999998874559998843
Q ss_pred cCCceEEEEeCEEEEccCCCCCCcc
Q 024975 146 KDDVVEEETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 146 g~~~~~~~~ad~VIlAtG~~s~~~~ 170 (259)
+ ..+.+|.||+|||+.+.|..
T Consensus 150 ~----~~~~a~~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 150 G----GEYEADAVILATGGKSYPKT 170 (409)
T ss_dssp T----EEEEESEEEE----SSSGGG
T ss_pred c----ccccCCEEEEecCCCCcccc
Confidence 2 48999999999998777754
No 77
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=3.9e-17 Score=127.70 Aligned_cols=209 Identities=18% Similarity=0.167 Sum_probs=134.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccce-eccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR-VNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (259)
.+|++.||.||+-|++|..|.+.+ .+++.+||.+.+. |+. ++.-....+.-.....+. ...|...+.
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHp---------GmllegstlQv~FlkDLVTl~~PTs~yS 73 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHP---------GMLLEGSTLQVPFLKDLVTLVDPTSPYS 73 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCC---------CcccCCccccccchhhhccccCCCCchH
Confidence 479999999999999999999875 7899999987652 332 111111111211222222 223333333
Q ss_pred ecCCCCCcc-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCc-EEEEEEecCCceEEEEeCE
Q 024975 80 FQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 80 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~ad~ 157 (259)
|..+-..-. ...+-.....+++|.++.+|++|.+..+ .. ++++++|++|...+.+. ........++ ..++|+.
T Consensus 74 FLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~--~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~ 148 (436)
T COG3486 74 FLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PS--LRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRARN 148 (436)
T ss_pred HHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-Cc--cccCCeeccccccCCcceeEEEEEcCCC--cEEEeee
Confidence 332221110 0011123456789999999999999888 44 89999999885544332 3322222121 2899999
Q ss_pred EEEccCCCCCCccCCCCCCCCCC-CceEEcccCCCC-CCCCC-CeEEEEccCcCHHHHHHHHhcc----cCeEEEEecCC
Q 024975 158 VVVCNGHFSVPRLAQVPGIDSWP-GKQMHSHNYRIP-NPFQD-QVVILIGHYASGLDIKRDLAGF----AKEVHIASRSV 230 (259)
Q Consensus 158 VIlAtG~~s~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~~~-~~v~viG~G~~a~e~a~~l~~~----~~~v~~~~r~~ 230 (259)
||+++| ..|.+|+. ...+. ..++|+..+... ..... ++|+|||+|.||.|+...|... ..++.|+.|+.
T Consensus 149 lVlg~G--~~P~IP~~--f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~ 224 (436)
T COG3486 149 LVLGVG--TQPYIPPC--FRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS 224 (436)
T ss_pred EEEccC--CCcCCChH--HhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC
Confidence 999999 89999862 22222 367888877643 22333 4499999999999999998644 34599999999
No 78
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.72 E-value=8.2e-17 Score=134.87 Aligned_cols=159 Identities=27% Similarity=0.416 Sum_probs=108.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++|+|||+|++|+++|..|++.|.+|+|||+.+.+||...+. . +.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------i--------------------------p~ 188 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------I--------------------------PN 188 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------C--------------------------CC
Confidence 689999999999999999999999999999998888776541 0 00
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+. .+ .++.....+.+.+.+++ ++.++.+.. .. ..+. ....||.||+||
T Consensus 189 ~~--------------~~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~~--------~~~~-----~~~~~d~VilAt 236 (485)
T TIGR01317 189 MK--------------LD--KAIVDRRIDLLSAEGID--FVTNTEIGV-DI--------SADE-----LKEQFDAVVLAG 236 (485)
T ss_pred cc--------------CC--HHHHHHHHHHHHhCCCE--EECCCEeCC-cc--------CHHH-----HHhhCCEEEEcc
Confidence 00 00 34444445566677888 888877631 10 0000 135699999999
Q ss_pred CCCCCCccCCCCCCCCCCCceEEcc------------cC--CCCCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEEe
Q 024975 163 GHFSVPRLAQVPGIDSWPGKQMHSH------------NY--RIPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIAS 227 (259)
Q Consensus 163 G~~s~~~~~~~~g~~~~~~~~~~~~------------~~--~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~ 227 (259)
|.. .++.+.++|.+. .+...... .. .......+++|+|||+|++|+|+|..+.+.+ ..|++++
T Consensus 237 Ga~-~~~~l~i~G~~~-~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~ 314 (485)
T TIGR01317 237 GAT-KPRDLPIPGREL-KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFE 314 (485)
T ss_pred CCC-CCCcCCCCCcCC-CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEE
Confidence 952 377778888643 22211100 00 0011246799999999999999988877775 5799998
Q ss_pred cCC
Q 024975 228 RSV 230 (259)
Q Consensus 228 r~~ 230 (259)
+.+
T Consensus 315 ~~~ 317 (485)
T TIGR01317 315 IMP 317 (485)
T ss_pred ecC
Confidence 776
No 79
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.71 E-value=9.7e-17 Score=137.21 Aligned_cols=158 Identities=35% Similarity=0.503 Sum_probs=105.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++|+|||+||+||++|..|.+.|.+|+|+|+.+.+||.+.+. .. .
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------ip--------------------------~ 182 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------IP--------------------------A 182 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------CC--------------------------C
Confidence 689999999999999999999999999999999998877642 00 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeE-EEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+ .++ .++...-.+.+.+.|++ +.+++.+ .++.... ....+|+||+|
T Consensus 183 ~--------------~~~--~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~~---------------~~~~~D~Vi~A 229 (564)
T PRK12771 183 Y--------------RLP--REVLDAEIQRILDLGVE--VRLGVRVGEDITLEQ---------------LEGEFDAVFVA 229 (564)
T ss_pred c--------------cCC--HHHHHHHHHHHHHCCCE--EEeCCEECCcCCHHH---------------HHhhCCEEEEe
Confidence 0 011 34444444556678887 7777654 2221110 01248999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcc----cCCCCCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSH----NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~ 230 (259)
||.. .+..+.+++... .+...... .........+++++|+|+|.+++|.+..+.+.+ ..|++++|.+
T Consensus 230 tG~~-~~~~~~i~g~~~-~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 230 IGAQ-LGKRLPIPGEDA-AGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred eCCC-CCCcCCCCCCcc-CCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 9963 233445666432 22211110 011112345789999999999999999888887 6799999987
No 80
>PRK13984 putative oxidoreductase; Provisional
Probab=99.71 E-value=1e-16 Score=138.35 Aligned_cols=156 Identities=30% Similarity=0.474 Sum_probs=104.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+|++|+++|..|.++|++|+|+|+.+.+||.+.+.
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~------------------------------------- 325 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG------------------------------------- 325 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec-------------------------------------
Confidence 4689999999999999999999999999999999888876541
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+. ...+ .++.....+.+.+.+++ ++.++.|..- +..+. ....||+||+|
T Consensus 326 -i~~-----------~~~~--~~~~~~~~~~~~~~gv~--~~~~~~v~~~---------~~~~~-----~~~~yD~vilA 375 (604)
T PRK13984 326 -IPS-----------YRLP--DEALDKDIAFIEALGVK--IHLNTRVGKD---------IPLEE-----LREKHDAVFLS 375 (604)
T ss_pred -CCc-----------ccCC--HHHHHHHHHHHHHCCcE--EECCCEeCCc---------CCHHH-----HHhcCCEEEEE
Confidence 000 0001 34444445566677888 8888766320 01111 13579999999
Q ss_pred cCCCCCCccCCCCCCCCCCCceEEcccCCC----------CCCCCCCeEEEEccCcCHHHHHHHHhccc------CeEEE
Q 024975 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI----------PNPFQDQVVILIGHYASGLDIKRDLAGFA------KEVHI 225 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~v~viG~G~~a~e~a~~l~~~~------~~v~~ 225 (259)
||. ..++.+.++|... .+ ......+.. .....+++|+|||+|.+|+|+|..+.+.+ .+|++
T Consensus 376 tGa-~~~r~l~i~G~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v 452 (604)
T PRK13984 376 TGF-TLGRSTRIPGTDH-PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKV 452 (604)
T ss_pred cCc-CCCccCCCCCcCC-cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEE
Confidence 995 3467777888643 11 111111110 01123589999999999999999998774 36787
Q ss_pred Ee
Q 024975 226 AS 227 (259)
Q Consensus 226 ~~ 227 (259)
+.
T Consensus 453 ~~ 454 (604)
T PRK13984 453 TS 454 (604)
T ss_pred ec
Confidence 74
No 81
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.70 E-value=4.2e-16 Score=127.32 Aligned_cols=42 Identities=33% Similarity=0.373 Sum_probs=38.3
Q ss_pred CCeEEEECCChHHHHHHHHHH-HcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~-~~g~~v~v~e~~~~~gg~~~~ 43 (259)
.++|+||||||+|+++|.+|+ +.|++|+|||+.+.+||.+++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 468999999999999999875 579999999999999999987
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.70 E-value=1.1e-16 Score=139.54 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~ 40 (259)
.++|+||||||+|+++|++|++.|++|+|||+.+..|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 478999999999999999999999999999997654443
No 83
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.69 E-value=1.2e-16 Score=130.02 Aligned_cols=163 Identities=19% Similarity=0.239 Sum_probs=104.4
Q ss_pred eEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 4 HVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
+|||||||++|+.+|..|.++ +.+|+|+|+++.. .+ ...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~-----------------------~~~----------- 42 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PY-----------------------SGM----------- 42 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cc-----------------------cch-----------
Confidence 589999999999999999643 6799999997532 00 000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl 160 (259)
.+... ...+ ..+++...+.+.+.+.+++ ++. .+|++++... + +|.+.++. .+.||+||+
T Consensus 43 --~~~~~--------~g~~-~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~-~--~V~~~~g~----~~~yD~Lvi 101 (364)
T TIGR03169 43 --LPGMI--------AGHY-SLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDR-R--KVLLANRP----PLSYDVLSL 101 (364)
T ss_pred --hhHHH--------heeC-CHHHhcccHHHHHHhcCCE--EEE-EEEEEEeccc-C--EEEECCCC----cccccEEEE
Confidence 00000 0000 0134444556666677887 655 5899998764 3 56666654 699999999
Q ss_pred ccCCCCCCccCCCCCCCCCCCceEE---ccc----CCC-C-CCCCCCeEEEEccCcCHHHHHHHHhcc----c--CeEEE
Q 024975 161 CNGHFSVPRLAQVPGIDSWPGKQMH---SHN----YRI-P-NPFQDQVVILIGHYASGLDIKRDLAGF----A--KEVHI 225 (259)
Q Consensus 161 AtG~~s~~~~~~~~g~~~~~~~~~~---~~~----~~~-~-~~~~~~~v~viG~G~~a~e~a~~l~~~----~--~~v~~ 225 (259)
||| +.+..|.+||.......... ... ... . .....++++|+|+|.+|+|+|..|.+. + .+|++
T Consensus 102 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~l 179 (364)
T TIGR03169 102 DVG--STTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL 179 (364)
T ss_pred ccC--CCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999 78888888885431100000 000 000 0 012357899999999999999999743 3 47999
Q ss_pred Ee
Q 024975 226 AS 227 (259)
Q Consensus 226 ~~ 227 (259)
+.
T Consensus 180 i~ 181 (364)
T TIGR03169 180 IA 181 (364)
T ss_pred Ee
Confidence 93
No 84
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.65 E-value=1.5e-15 Score=121.29 Aligned_cols=162 Identities=19% Similarity=0.317 Sum_probs=114.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
..++|||+|++|..|+..+++.|. +++++-+...+ .+. +. ..+.+....
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----pyd-----------------r~-~Ls~~~~~~------- 125 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PYD-----------------RA-RLSKFLLTV------- 125 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----ccc-----------------ch-hcccceeec-------
Confidence 579999999999999999999875 67766544321 000 00 000000000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl 160 (259)
...+.....++.++.+++ +++++.|++++... -+|.+.+|. .+.+++++|
T Consensus 126 ---------------------~~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~~---K~l~~~~Ge----~~kys~Lil 175 (478)
T KOG1336|consen 126 ---------------------GEGLAKRTPEFYKEKGIE--LILGTSVVKADLAS---KTLVLGNGE----TLKYSKLII 175 (478)
T ss_pred ---------------------cccccccChhhHhhcCce--EEEcceeEEeeccc---cEEEeCCCc----eeecceEEE
Confidence 022223334455678899 99999999998764 567777765 899999999
Q ss_pred ccCCCCCCccCCCCCCCCCCCceEEcccCCCC--------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
||| +.++.|++||... . ....+... ......+|+++|+|+.++|++.+|...+.+||++++.+
T Consensus 176 ATG--s~~~~l~~pG~~~---~--nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~ 246 (478)
T KOG1336|consen 176 ATG--SSAKTLDIPGVEL---K--NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP 246 (478)
T ss_pred eec--CccccCCCCCccc---c--ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc
Confidence 999 7899999999873 1 11112211 11246779999999999999999998899999999999
No 85
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.65 E-value=3.7e-15 Score=106.23 Aligned_cols=138 Identities=25% Similarity=0.422 Sum_probs=88.2
Q ss_pred EEECCChHHHHHHHHHHHc-----CCcEEEEeeCCCcCceeeeCCC-CCCCCCCCCCCCCCcc-----ccccccceeccc
Q 024975 6 AVIGAGAAGLVVGHELLRE-----GHTVVVYEKGEQVGGSWIYTSE-TESDPLGVDPNRYPVH-----SSLYKSLRVNLP 74 (259)
Q Consensus 6 ~IIG~G~~Gl~~a~~L~~~-----g~~v~v~e~~~~~gg~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 74 (259)
+|||+|++|++++.+|.+. ..+|+|||+++. |....+... .....++......... ...+.|+..+..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 6999999999999999987 469999999654 533333222 1111111111111110 111222222111
Q ss_pred cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (259)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (259)
.+ ........|++|..+.+||.+.+... ++. +.+...+|++++..+ +.|.+.+.+|.
T Consensus 80 ~~--------------~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~-v~~~~~~V~~i~~~~-~~~~v~~~~g~- 142 (156)
T PF13454_consen 80 DE--------------AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGIT-VRHVRAEVVDIRRDD-DGYRVVTADGQ- 142 (156)
T ss_pred cc--------------ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcE-EEEEeeEEEEEEEcC-CcEEEEECCCC-
Confidence 00 01234678999999999999887653 333 234577999999987 67889888876
Q ss_pred ceEEEEeCEEEEccCC
Q 024975 149 VVEEETFDAVVVCNGH 164 (259)
Q Consensus 149 ~~~~~~ad~VIlAtG~ 164 (259)
.+.||.||+|||+
T Consensus 143 ---~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 143 ---SIRADAVVLATGH 155 (156)
T ss_pred ---EEEeCEEEECCCC
Confidence 7899999999995
No 86
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=124.78 Aligned_cols=158 Identities=28% Similarity=0.434 Sum_probs=112.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++|+||||||+||++|..|++.|++|+++|+.+.+||...+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGI------------------------------------- 166 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGI------------------------------------- 166 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecC-------------------------------------
Confidence 6899999999999999999999999999999999999998730
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEE-EEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVL-NARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~-~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
| .|.-..++.+...+++.+.|++ ++.++++- .+... . ..-.+|.|++|
T Consensus 167 -P-------------~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~~it~~----------~-----L~~e~Dav~l~ 215 (457)
T COG0493 167 -P-------------DFKLPKDILDRRLELLERSGVE--FKLNVRVGRDITLE----------E-----LLKEYDAVFLA 215 (457)
T ss_pred -c-------------hhhccchHHHHHHHHHHHcCeE--EEEcceECCcCCHH----------H-----HHHhhCEEEEe
Confidence 0 0111166777777888888887 88887654 22211 1 12345999999
Q ss_pred cCCCCCCccCCCCCCCCCCCc-----------eEEcccCC--CCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEe
Q 024975 162 NGHFSVPRLAQVPGIDSWPGK-----------QMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS 227 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~~~~~-----------~~~~~~~~--~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~ 227 (259)
+|. ..|+...++|.+.- +. ......+. ......+++|+|||+|.|++|++....+.|. +|+.++
T Consensus 216 ~G~-~~~~~l~i~g~d~~-gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~ 293 (457)
T COG0493 216 TGA-GKPRPLDIPGEDAK-GVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY 293 (457)
T ss_pred ccc-cCCCCCCCCCcCCC-cchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEec
Confidence 997 57888888887531 10 00000011 1111234999999999999999998888875 788887
Q ss_pred cCC
Q 024975 228 RSV 230 (259)
Q Consensus 228 r~~ 230 (259)
|..
T Consensus 294 ~~~ 296 (457)
T COG0493 294 RED 296 (457)
T ss_pred ccc
Confidence 544
No 87
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.62 E-value=8.5e-15 Score=112.52 Aligned_cols=142 Identities=23% Similarity=0.125 Sum_probs=88.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+||+||||||+|+++|+.|++.|++|+|+|+...+|+...-. +...............+.. .
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g--------g~~~~~~~v~~~~~~~l~~---------~ 87 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG--------GMLFNKIVVQEEADEILDE---------F 87 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC--------ccccccccchHHHHHHHHH---------C
Confidence 5899999999999999999999999999999998887653211 0000000000000000100 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEe------cC-CceEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRK------KD-DVVEEE 153 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~------g~-~~~~~~ 153 (259)
..++... ........+..+...|.+.+.+.+++ ++.+++|+++...++ ..+.+.+.. +. .....+
T Consensus 88 gv~~~~~-----~~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i 160 (257)
T PRK04176 88 GIRYKEV-----EDGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTI 160 (257)
T ss_pred CCCceee-----cCcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEE
Confidence 1111110 01111234578888888888888999 999999999987653 223333321 10 123579
Q ss_pred EeCEEEEccCCCCC
Q 024975 154 TFDAVVVCNGHFSV 167 (259)
Q Consensus 154 ~ad~VIlAtG~~s~ 167 (259)
.+++||+|||+++.
T Consensus 161 ~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 161 EAKAVVDATGHDAE 174 (257)
T ss_pred EcCEEEEEeCCCcH
Confidence 99999999997653
No 88
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.60 E-value=2e-14 Score=113.73 Aligned_cols=147 Identities=23% Similarity=0.244 Sum_probs=87.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC--CCCCCCCCCCCCccccccccceecccccccee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
+||+||||||+|+++|..|++.|++|+|+|+.+.++..+....-.. ...+...... ... ............ ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~~~~~--~~ 75 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IVN--LVRGARFFSPNG--DS 75 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hhh--heeeEEEEcCCC--cE
Confidence 6999999999999999999999999999999977653221100000 0000000000 000 000000000000 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl 160 (259)
...+. ........++.++.+.|.+.+.+.+++ ++++++|+++...+ +.+.+.+.++. ..+++|+||+
T Consensus 76 ~~~~~-------~~~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~-~~~~~~~~~~~---~~~~a~~vv~ 142 (295)
T TIGR02032 76 VEIPI-------ETELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHD-DRVVVIVRGGE---GTVTAKIVIG 142 (295)
T ss_pred EEecc-------CCCcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeC-CEEEEEEcCcc---EEEEeCEEEE
Confidence 00000 011112245688889999999888998 99999999998876 55666554432 4789999999
Q ss_pred ccCCCCC
Q 024975 161 CNGHFSV 167 (259)
Q Consensus 161 AtG~~s~ 167 (259)
|+|.++.
T Consensus 143 a~G~~s~ 149 (295)
T TIGR02032 143 ADGSRSI 149 (295)
T ss_pred CCCcchH
Confidence 9997653
No 89
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.60 E-value=2e-14 Score=110.10 Aligned_cols=141 Identities=20% Similarity=0.109 Sum_probs=87.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+||+||||||+|+++|+.|+++|.+|+|+||+..+|+..... +...............+ .-.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~g--------g~~~~~~~~~~~~~~~l---------~~~ 83 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGG--------GMLFSKIVVEKPAHEIL---------DEF 83 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCC--------CcceecccccchHHHHH---------HHC
Confidence 5899999999999999999999999999999999887543211 00000000000000000 001
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC--cEEEEEEe------cC-CceEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRK------KD-DVVEE 152 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~v~~~~------g~-~~~~~ 152 (259)
..++... ........+.++.+.|.+.+.+.+++ ++.++.|.++...++. ...+.++. +. .....
T Consensus 84 gi~~~~~-----~~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~ 156 (254)
T TIGR00292 84 GIRYEDE-----GDGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT 156 (254)
T ss_pred CCCeeec-----cCceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE
Confidence 1121111 11112234578888888888889998 9999999999876632 22333321 10 12357
Q ss_pred EEeCEEEEccCCCC
Q 024975 153 ETFDAVVVCNGHFS 166 (259)
Q Consensus 153 ~~ad~VIlAtG~~s 166 (259)
+.++.||.|||+.+
T Consensus 157 i~Ak~VVdATG~~a 170 (254)
T TIGR00292 157 QRSRVVVDATGHDA 170 (254)
T ss_pred EEcCEEEEeecCCc
Confidence 99999999999744
No 90
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.59 E-value=1.7e-14 Score=118.52 Aligned_cols=147 Identities=22% Similarity=0.242 Sum_probs=92.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccc----eeccccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL----RVNLPRE 76 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 76 (259)
|++||+||||||+|++||+.|++.|.+|+|+|+...+|....-... ..+.. ........ .......
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~-------~~~~~---l~~l~~~~~~~i~~~v~~~ 71 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGG-------LSPRA---LEELIPDFDEEIERKVTGA 71 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccce-------echhh---HHHhCCCcchhhheeeeee
Confidence 5799999999999999999999999999999999888743322000 00000 00000000 0000000
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
...+........ ..........+..|.++|.+.+.+.|.+ +..+++++.+..++ +.+.+....++ ..++++
T Consensus 72 ~~~~~~~~~~~~---~~~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~-~~~~~~~~~~~---~e~~a~ 142 (396)
T COG0644 72 RIYFPGEKVAIE---VPVGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIRED-DGVVVGVRAGD---DEVRAK 142 (396)
T ss_pred EEEecCCceEEe---cCCCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeC-CcEEEEEEcCC---EEEEcC
Confidence 000000000000 0001112235688999999999999999 99999999999887 55665555544 589999
Q ss_pred EEEEccCCCC
Q 024975 157 AVVVCNGHFS 166 (259)
Q Consensus 157 ~VIlAtG~~s 166 (259)
+||.|+|..+
T Consensus 143 ~vI~AdG~~s 152 (396)
T COG0644 143 VVIDADGVNS 152 (396)
T ss_pred EEEECCCcch
Confidence 9999999644
No 91
>PRK06847 hypothetical protein; Provisional
Probab=99.58 E-value=2.5e-14 Score=117.09 Aligned_cols=158 Identities=21% Similarity=0.186 Sum_probs=91.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
++||+||||||+|+++|..|.+.|++|+|+|+.+.+. ......++.. ....+.... ..........+......
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~-~~~~~~~~~~~~~~~~~- 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE-CLEAGFGFDGVDLFDPD- 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH-HHHhCCCccceEEECCC-
Confidence 6899999999999999999999999999999986542 1111111000 000000000 00000000000000000
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
...+..++..... ...........+.++.++|.+.+.+.+++ ++++++|++++..+ +.+.+.+.++. .+.+|
T Consensus 82 g~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~~~ad 153 (375)
T PRK06847 82 GTLLAELPTPRLA-GDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD-DGVTVTFSDGT----TGRYD 153 (375)
T ss_pred CCEEEecCccccc-ccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC-CEEEEEEcCCC----EEEcC
Confidence 0000011100000 00001122345688899999998888988 99999999998765 66788877654 78999
Q ss_pred EEEEccCCCCCCc
Q 024975 157 AVVVCNGHFSVPR 169 (259)
Q Consensus 157 ~VIlAtG~~s~~~ 169 (259)
.||+|+|.+|..+
T Consensus 154 ~vI~AdG~~s~~r 166 (375)
T PRK06847 154 LVVGADGLYSKVR 166 (375)
T ss_pred EEEECcCCCcchh
Confidence 9999999877554
No 92
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.57 E-value=6.3e-14 Score=108.73 Aligned_cols=147 Identities=22% Similarity=0.340 Sum_probs=95.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
.+.|+|||+||||+.+|..|.++ +.+|.|+|+.+.+.|..++. ..|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG---------VAP----------------------- 67 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG---------VAP----------------------- 67 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec---------cCC-----------------------
Confidence 46899999999999999999985 68999999999999998872 111
Q ss_pred ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeE-EEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V 158 (259)
..|--......+...+++.... +.-+.+| .++. ++. -.-.+|.|
T Consensus 68 ------------------DHpEvKnvintFt~~aE~~rfs--f~gNv~vG~dvs----------l~e-----L~~~ydav 112 (468)
T KOG1800|consen 68 ------------------DHPEVKNVINTFTKTAEHERFS--FFGNVKVGRDVS----------LKE-----LTDNYDAV 112 (468)
T ss_pred ------------------CCcchhhHHHHHHHHhhccceE--EEecceeccccc----------HHH-----HhhcccEE
Confidence 0111133444555555554444 4444443 2221 111 13468999
Q ss_pred EEccCCCCCCccCCCCCCCCCCCceEEcc--cCC--------CCCCCCCCeEEEEccCcCHHHHHHHHh
Q 024975 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH--NYR--------IPNPFQDQVVILIGHYASGLDIKRDLA 217 (259)
Q Consensus 159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~--~~~--------~~~~~~~~~v~viG~G~~a~e~a~~l~ 217 (259)
|+|.|+ ..++..++||.+. .+...... .+. ...+....+|+|||.|+.|+|+|+.|.
T Consensus 113 vLaYGa-~~dR~L~IPGe~l-~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 113 VLAYGA-DGDRRLDIPGEEL-SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred EEEecC-CCCcccCCCCccc-ccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhh
Confidence 999997 5678888998762 11111000 000 112234688999999999999999985
No 93
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.56 E-value=5.7e-14 Score=116.35 Aligned_cols=154 Identities=23% Similarity=0.238 Sum_probs=86.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC-CCCCC---CCCcccc-ccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-GVDPN---RYPVHSS-LYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~~~~~~ 76 (259)
++||+||||||+|++||+.|+++|++|+|+||.+.+|.............. ...+. ...+... ....+.......
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 489999999999999999999999999999998877532110000000000 00000 0000000 000000000000
Q ss_pred cceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
... ..+..... .......| ..+.+|.++|.+.+.+.|++ ++.+++|+++...+ +.+.....++. .+.+
T Consensus 85 ~~~---~~~~~~~~-~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-g~v~~v~~~g~----~i~A 153 (428)
T PRK10157 85 AMT---MDYCNGDE-TSPSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRD-GKVVGVEADGD----VIEA 153 (428)
T ss_pred cee---eccccccc-cCCCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeC-CEEEEEEcCCc----EEEC
Confidence 000 01100000 00111122 35788999999999889999 99999999998765 44433333332 6899
Q ss_pred CEEEEccCCCC
Q 024975 156 DAVVVCNGHFS 166 (259)
Q Consensus 156 d~VIlAtG~~s 166 (259)
+.||+|+|.++
T Consensus 154 ~~VI~A~G~~s 164 (428)
T PRK10157 154 KTVILADGVNS 164 (428)
T ss_pred CEEEEEeCCCH
Confidence 99999999654
No 94
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.54 E-value=9.3e-14 Score=118.54 Aligned_cols=160 Identities=19% Similarity=0.117 Sum_probs=91.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCcc-ccccccceecccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPR 75 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 75 (259)
++||+||||||+|+++|..|.+.|++|+|+|+.+.+... +...+... ....+.... +.. ......+.....
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~--l~~~~~~~~~~~~~~~- 86 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADE--VLPHTTPNHGMRFLDA- 86 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhH--HHhhcccCCceEEEcC-
Confidence 579999999999999999999999999999998765321 11110000 000010000 000 000000000000
Q ss_pred ccceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975 76 ELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (259)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (259)
....+..++.... ....+. .....+..+.+.|.+.+.+. +++ ++++++|++++.++ +.+++.+++.+++..++
T Consensus 87 ~g~~~~~~~~~~~--~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~-~~v~v~~~~~~G~~~~i 161 (538)
T PRK06183 87 KGRCLAEIARPST--GEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD-DGVTVTLTDADGQRETV 161 (538)
T ss_pred CCCEEEEEcCCCC--CCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC-CeEEEEEEcCCCCEEEE
Confidence 0000111111000 000011 11224466777888877665 788 99999999999876 67888887544444689
Q ss_pred EeCEEEEccCCCCCCc
Q 024975 154 TFDAVVVCNGHFSVPR 169 (259)
Q Consensus 154 ~ad~VIlAtG~~s~~~ 169 (259)
++|+||.|+|..|..+
T Consensus 162 ~ad~vVgADG~~S~vR 177 (538)
T PRK06183 162 RARYVVGCDGANSFVR 177 (538)
T ss_pred EEEEEEecCCCchhHH
Confidence 9999999999877654
No 95
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.9e-13 Score=98.63 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=85.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccc-cceec
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE-LMGFQ 81 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (259)
-||+||||||+||+||++|++.|.+|+|||++-.+||...-- +. .++.+.-..+.+ ...-.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~G--------Gm----------lf~~iVv~~~a~~iL~e~ 92 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGG--------GM----------LFNKIVVREEADEILDEF 92 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccc--------cc----------ccceeeecchHHHHHHHh
Confidence 589999999999999999999999999999998888665432 11 111111111110 00001
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEE------ecC-CceEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSR------KKD-DVVEEE 153 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~------~g~-~~~~~~ 153 (259)
..++... .+...-....++...+...+.+.+.+ ++....|.++...++. .-.|.++ .+- --...+
T Consensus 93 gI~ye~~-----e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i 165 (262)
T COG1635 93 GIRYEEE-----EDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTI 165 (262)
T ss_pred CCcceec-----CCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCCceEEEEEecchhhhcccccCccee
Confidence 1222211 11111123467777888888888988 9999999999877642 2122221 110 011368
Q ss_pred EeCEEEEccCC
Q 024975 154 TFDAVVVCNGH 164 (259)
Q Consensus 154 ~ad~VIlAtG~ 164 (259)
++++||.||||
T Consensus 166 ~a~~VvDaTGH 176 (262)
T COG1635 166 RAKAVVDATGH 176 (262)
T ss_pred eEEEEEeCCCC
Confidence 99999999997
No 96
>PRK08244 hypothetical protein; Provisional
Probab=99.53 E-value=3e-13 Score=114.38 Aligned_cols=151 Identities=25% Similarity=0.250 Sum_probs=89.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecc-c
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P 74 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 74 (259)
|.+||+||||||+|+++|..|.+.|++|+|+|+.+.+. ......++.. ....+. .+.+.... +
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl-----------~~~l~~~~~~ 69 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGL-----------LERFLEKGRK 69 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCc-----------HHHHHhhccc
Confidence 57899999999999999999999999999999986542 1111110000 000010 00000000 0
Q ss_pred cccceecC----CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975 75 RELMGFQA----YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (259)
Q Consensus 75 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (259)
.....+.. ..+... ..........++..+.+.|.+.+.+.+++ +++++++++++..+ +.+.+.+.+.++ .
T Consensus 70 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~ 143 (493)
T PRK08244 70 LPSGHFAGLDTRLDFSAL--DTSSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG-DGVEVVVRGPDG-L 143 (493)
T ss_pred ccceEEecccccCCcccC--CCCCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC-CeEEEEEEeCCc-c
Confidence 00000000 011000 00001111235577888888888888998 99999999998776 567777664332 2
Q ss_pred EEEEeCEEEEccCCCCCC
Q 024975 151 EEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~~ 168 (259)
..+++|+||.|+|.+|..
T Consensus 144 ~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 144 RTLTSSYVVGADGAGSIV 161 (493)
T ss_pred EEEEeCEEEECCCCChHH
Confidence 478999999999987643
No 97
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.53 E-value=4e-14 Score=116.94 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=88.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCcc-ccccccceec--cccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVH-SSLYKSLRVN--LPRE 76 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~ 76 (259)
|.+||+||||||+|+++|..|.++|++|+|+|+.+..............-.....+.. ..+. -..++.+... .+..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 6789999999999999999999999999999998632111000000000000000000 0000 0001111100 0000
Q ss_pred cceecC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975 77 LMGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (259)
Q Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (259)
...+.+ ..+...... .........+..+.+.|.+.+.+.+++ +++++++++++..+ +.+.|.+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~--- 153 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVH-AEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG-DDWLLTLADGR--- 153 (405)
T ss_pred eEEEEcCCCCceEEecccccC-CCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC---
Confidence 000000 000000000 000001133467777777777777888 99999999998776 66888877654
Q ss_pred EEEEeCEEEEccCCCCCCc
Q 024975 151 EEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~~~ 169 (259)
.+++|.||.|+|.+|..+
T Consensus 154 -~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 154 -QLRAPLVVAADGANSAVR 171 (405)
T ss_pred -EEEeCEEEEecCCCchhH
Confidence 799999999999877554
No 98
>PRK10015 oxidoreductase; Provisional
Probab=99.52 E-value=4.9e-13 Score=110.74 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=85.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC-CCCCCCCCCCCCccccccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
++||+||||||+|++||+.|++.|++|+|+||.+.+|.......... .......+. +.... .+..........+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~--~~~~~---~i~~~~~~~~~~~ 79 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPG--FAASA---PVERKVTREKISF 79 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHccc--ccccC---CccccccceeEEE
Confidence 38999999999999999999999999999999887653211000000 000000000 00000 0000000000000
Q ss_pred c------CCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975 81 Q------AYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (259)
Q Consensus 81 ~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (259)
. ...+...... ......| ..|..|.++|.+.+.+.|++ ++.+++|+++...+ +.+.....+ + ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~~v~~~-~---~~i 151 (429)
T PRK10015 80 LTEESAVTLDFHREQPD-VPQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREG-NKVTGVQAG-D---DIL 151 (429)
T ss_pred EeCCCceEeecccCCCC-CCCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CEEEEEEeC-C---eEE
Confidence 0 0001000000 0001122 35678888999999888999 99999999988765 444322222 2 379
Q ss_pred EeCEEEEccCCCCC
Q 024975 154 TFDAVVVCNGHFSV 167 (259)
Q Consensus 154 ~ad~VIlAtG~~s~ 167 (259)
.++.||+|+|..+.
T Consensus 152 ~A~~VI~AdG~~s~ 165 (429)
T PRK10015 152 EANVVILADGVNSM 165 (429)
T ss_pred ECCEEEEccCcchh
Confidence 99999999996543
No 99
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.52 E-value=4.6e-13 Score=109.93 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=86.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCc--CceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV--GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
|||+||||||+|+++|+.|++.|++|+|+|+. +.+ ++.... +.. ...++... ... ...+.......+...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~-~~~-l~~l~i~~--~~~-~~~~~~~~~~~~~~~-- 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIP-PCL-IEEFDIPD--SLI-DRRVTQMRMISPSRV-- 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcC-Hhh-hhhcCCch--HHH-hhhcceeEEEcCCCc--
Confidence 79999999999999999999999999999997 221 111000 000 00000000 000 000111111111100
Q ss_pred ecCCCCCccCCCCCCCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec----CCceEE
Q 024975 80 FQAYPFVARNYEGSVDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK----DDVVEE 152 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g----~~~~~~ 152 (259)
..... ......| ..+..|.++|.+.+.+.|++ ++. .+|+++...+ +.+.+.+.++ .++...
T Consensus 74 ----~~~~~----~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~--v~~-~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~ 141 (388)
T TIGR02023 74 ----PIKVT----IPSEDGYVGMVRREVFDSYLRERAQKAGAE--LIH-GLFLKLERDR-DGVTLTYRTPKKGAGGEKGS 141 (388)
T ss_pred ----eeeec----cCCCCCceEeeeHHHHHHHHHHHHHhCCCE--EEe-eEEEEEEEcC-CeEEEEEEeccccCCCcceE
Confidence 00000 0001112 57789999999999888998 754 4689988765 6788877652 223357
Q ss_pred EEeCEEEEccCCCCCC
Q 024975 153 ETFDAVVVCNGHFSVP 168 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~ 168 (259)
+++|+||.|+|..|..
T Consensus 142 i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 142 VEADVVIGADGANSPV 157 (388)
T ss_pred EEeCEEEECCCCCcHH
Confidence 9999999999976643
No 100
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.51 E-value=1.1e-13 Score=113.71 Aligned_cols=151 Identities=25% Similarity=0.380 Sum_probs=92.7
Q ss_pred EEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCC---Cc-c--ccccccceeccccccce
Q 024975 6 AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY---PV-H--SSLYKSLRVNLPRELMG 79 (259)
Q Consensus 6 ~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~ 79 (259)
+|||||++|+++|..|++.|.+|+|+|+++.+|+.+....+..++......... .. . ......+......+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999999888765544433322222111000 00 0 00011111111111111
Q ss_pred ec-C--CCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975 80 FQ-A--YPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (259)
Q Consensus 80 ~~-~--~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (259)
|. . .++.. ......|| ....+.+.+.+.+++.+++ ++++++|+++...+ +.|.+.++ + ..+
T Consensus 81 ~~~~~Gv~~~~-----~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~-~~~~v~~~-~----~~i 147 (400)
T TIGR00275 81 FFESLGLELKV-----EEDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD-NGFGVETS-G----GEY 147 (400)
T ss_pred HHHHcCCeeEE-----ecCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC-CeEEEEEC-C----cEE
Confidence 10 0 11111 01223343 2467888888888888998 99999999998765 66777763 2 268
Q ss_pred EeCEEEEccCCCCCCc
Q 024975 154 TFDAVVVCNGHFSVPR 169 (259)
Q Consensus 154 ~ad~VIlAtG~~s~~~ 169 (259)
.+|.||+|+|.++.|.
T Consensus 148 ~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 148 EADKVILATGGLSYPQ 163 (400)
T ss_pred EcCEEEECCCCcccCC
Confidence 9999999999876553
No 101
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.51 E-value=1.7e-13 Score=111.22 Aligned_cols=154 Identities=26% Similarity=0.308 Sum_probs=87.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCCCCCCCCCCCCCCccc-cccccceecc-cccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNL-PREL 77 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~ 77 (259)
+||+||||||+|+++|..|+++|++|+|||+.+.+... ....++.. ..+.. .....+.... +...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~----------~~l~~lgl~~~~~~~~~~~~~ 71 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSL----------RILQRLGLLDEILARGSPHEV 71 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHH----------HHHHHTTEHHHHHHHSEEECE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccc----------cccccccchhhhhhhcccccc
Confidence 79999999999999999999999999999998654210 00000000 00000 0000000000 0000
Q ss_pred ce--e-cC---------CCCCccCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEE
Q 024975 78 MG--F-QA---------YPFVARNY--EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS 143 (259)
Q Consensus 78 ~~--~-~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~ 143 (259)
.. + .. .+...... ...........+.++.+.|.+.+.+.+++ +.++++++++..++ +.+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~-~~~~~~~ 148 (356)
T PF01494_consen 72 MRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDD-DGVTVVV 148 (356)
T ss_dssp EEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEET-TEEEEEE
T ss_pred eeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeecccccccc-ccccccc
Confidence 00 0 00 00000000 00111112235678999999999999988 99999999999876 5666666
Q ss_pred Eec-CCceEEEEeCEEEEccCCCCCCc
Q 024975 144 RKK-DDVVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 144 ~~g-~~~~~~~~ad~VIlAtG~~s~~~ 169 (259)
... ++..+.+++|.||.|+|.+|..+
T Consensus 149 ~~~~~g~~~~i~adlvVgADG~~S~vR 175 (356)
T PF01494_consen 149 RDGEDGEEETIEADLVVGADGAHSKVR 175 (356)
T ss_dssp EETCTCEEEEEEESEEEE-SGTT-HHH
T ss_pred ccccCCceeEEEEeeeecccCcccchh
Confidence 665 35556899999999999877543
No 102
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.50 E-value=3.6e-14 Score=105.97 Aligned_cols=148 Identities=25% Similarity=0.359 Sum_probs=88.5
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
||+|||||++|+++|..|++.+.+++|+|+.+..+..... ......... .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------------------~~~~~~~~~---------~ 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------------------IPSPLLVEI---------A 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------------------HHHHHHHHH---------H
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------------------ccccccccc---------c
Confidence 7999999999999999999999999999886532210000 000000000 0
Q ss_pred CCCccCCCCCCCCCCCCCHHHHH--H--HHHHHHHHhCCceeEEeceeEEEEEEeCCCc-----EEEEEEecCCceEEEE
Q 024975 84 PFVARNYEGSVDLRRYPGHEEVL--R--YLQNFAREFGVDQVVRLHTEVLNARLVESNK-----WKVKSRKKDDVVEEET 154 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~--~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-----~~v~~~~g~~~~~~~~ 154 (259)
+ ....+. . .+.+.+...+++ +..++++.++.... +. +.+.... .+....+.
T Consensus 51 ~----------------~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 110 (201)
T PF07992_consen 51 P----------------HRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPES-KRVVCPAVTIQVVE-TGDGREIK 110 (201)
T ss_dssp H----------------HHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEEST-TEEEETCEEEEEEE-TTTEEEEE
T ss_pred c----------------cccccccccccccccccccceEE--Eeeccccccccccc-cccccCcccceeec-cCCceEec
Confidence 0 001111 1 223333456787 77899999998876 42 2332222 22346899
Q ss_pred eCEEEEccCCCCCCccCCCCCCCC-CC-CceEEcccCCCCCCCCCCeEEEEc
Q 024975 155 FDAVVVCNGHFSVPRLAQVPGIDS-WP-GKQMHSHNYRIPNPFQDQVVILIG 204 (259)
Q Consensus 155 ad~VIlAtG~~s~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~v~viG 204 (259)
||+||+||| +.+..|.+||.+. +. ........+...... .++++|+|
T Consensus 111 ~d~lviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~v~VvG 159 (201)
T PF07992_consen 111 YDYLVIATG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLES-PKRVAVVG 159 (201)
T ss_dssp EEEEEEEST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSST-TSEEEEES
T ss_pred CCeeeecCc--cccceeecCCCccccccccccccccccccccc-cccccccc
Confidence 999999999 7788888888631 11 222233333333223 34999999
No 103
>PRK06185 hypothetical protein; Provisional
Probab=99.49 E-value=2.6e-13 Score=112.24 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=84.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+... ....+... ...++...............+.......
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 589999999999999999999999999999997543110 00000000 0000000000000000000010000000
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
.... ..+.... .......+.++..+.+.|.+.+.+. +++ ++++++|+++...++....+.+...++ ...+.+
T Consensus 86 ~~~~--~~~~~~~--~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~~~v~~v~~~~~~g-~~~i~a 158 (407)
T PRK06185 86 TVTL--ADFSRLP--TPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEGGRVTGVRARTPDG-PGEIRA 158 (407)
T ss_pred EEEe--cchhhcC--CCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEcCCC-cEEEEe
Confidence 0000 0110000 0001112245577888888877664 788 899999999987763333345443222 146899
Q ss_pred CEEEEccCCCCC
Q 024975 156 DAVVVCNGHFSV 167 (259)
Q Consensus 156 d~VIlAtG~~s~ 167 (259)
|.||.|+|.+|.
T Consensus 159 ~~vI~AdG~~S~ 170 (407)
T PRK06185 159 DLVVGADGRHSR 170 (407)
T ss_pred CEEEECCCCchH
Confidence 999999998764
No 104
>PRK06834 hypothetical protein; Provisional
Probab=99.49 E-value=5.3e-13 Score=112.15 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=87.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC--ce-e-eeCCCCC--CCCCCCCCCCCCccccccccceecc-c
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--GS-W-IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P 74 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g--g~-~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 74 (259)
.+||+||||||+|+++|+.|.++|++|+|+|+.+.+. +. . ...+... ....+ .++.+.... .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lG-----------l~~~l~~~~~~ 71 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRG-----------IADRFLAQGQV 71 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcC-----------cHHHHHhcCCc
Confidence 5899999999999999999999999999999986431 10 0 0000000 00000 011111000 0
Q ss_pred c--ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975 75 R--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (259)
Q Consensus 75 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (259)
. .......+.+... ..............+.+.|.+.+.+.+++ ++++++|++++..+ +.+.+.+.++. .
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~-~~v~v~~~~g~----~ 142 (488)
T PRK06834 72 AQVTGFAATRLDISDF--PTRHNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD-TGVDVELSDGR----T 142 (488)
T ss_pred cccceeeeEecccccC--CCCCCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC----E
Confidence 0 0000000110000 00000111223467788888888888888 99999999999876 66777775543 7
Q ss_pred EEeCEEEEccCCCCCC
Q 024975 153 ETFDAVVVCNGHFSVP 168 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~ 168 (259)
+++|+||.|+|.+|..
T Consensus 143 i~a~~vVgADG~~S~v 158 (488)
T PRK06834 143 LRAQYLVGCDGGRSLV 158 (488)
T ss_pred EEeCEEEEecCCCCCc
Confidence 9999999999987654
No 105
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.49 E-value=1.2e-13 Score=113.82 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=88.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
+.||+||||||+|+++|..|.+.|++|+|+|+.+.++. .....++.. ...++..... .........+.......
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAA-RQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHH-HhhccCCcceEEEeCCC
Confidence 46999999999999999999999999999999876531 111111100 0000100000 00000000000000000
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
...+...+.................+.++.+.|.+.+.+.+ ++ ++++++++++...+ +.+.+.+.++. .+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a 155 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDG-DGVTVFDQQGN----RWTG 155 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCC-CceEEEEcCCC----EEec
Confidence 00000000000000000001112356778888888776654 77 89999999998765 66777776654 7899
Q ss_pred CEEEEccCCCCCCc
Q 024975 156 DAVVVCNGHFSVPR 169 (259)
Q Consensus 156 d~VIlAtG~~s~~~ 169 (259)
|.||.|+|.+|..+
T Consensus 156 d~vV~AdG~~S~~r 169 (396)
T PRK08163 156 DALIGCDGVKSVVR 169 (396)
T ss_pred CEEEECCCcChHHH
Confidence 99999999877654
No 106
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.49 E-value=7.4e-14 Score=101.18 Aligned_cols=138 Identities=23% Similarity=0.206 Sum_probs=76.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccc-cccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPR-ELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (259)
.+||+||||||+||+||++|++.|++|++||++..+||..... +. .+..+.-..+. ....-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G--------g~----------lf~~iVVq~~a~~iL~e 78 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG--------GM----------LFNKIVVQEEADEILDE 78 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS---------CT----------T---EEEETTTHHHHHH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc--------cc----------ccchhhhhhhHHHHHHh
Confidence 4799999999999999999999999999999998888654321 11 11111111110 00000
Q ss_pred cCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecC-------CceE
Q 024975 81 QAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKD-------DVVE 151 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~-------~~~~ 151 (259)
...++... ....| .+..++...|...+.+.|+. ++....|.++...++ +.-.|-++-.. --..
T Consensus 79 lgi~y~~~------~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl 150 (230)
T PF01946_consen 79 LGIPYEEY------GDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL 150 (230)
T ss_dssp HT---EE-------SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred CCceeEEe------CCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence 11122111 11122 34467778887777778998 999999999987763 22222222100 0124
Q ss_pred EEEeCEEEEccCCC
Q 024975 152 EETFDAVVVCNGHF 165 (259)
Q Consensus 152 ~~~ad~VIlAtG~~ 165 (259)
.+++++||.||||-
T Consensus 151 ~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 151 TIRAKVVIDATGHD 164 (230)
T ss_dssp EEEESEEEE---SS
T ss_pred eEEEeEEEeCCCCc
Confidence 79999999999973
No 107
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.49 E-value=2.2e-13 Score=112.05 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=87.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC----c---e-eeeCCCCC--CCCCCCCCCCCCcccccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----G---S-WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV 71 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g----g---~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 71 (259)
++||+||||||+|+++|+.|.++|++|+|+|+.+.+. + . ....+... ...++............+..+..
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 4899999999999999999999999999999986432 0 0 00000000 00000000000000000000000
Q ss_pred ccccccceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975 72 NLPRELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (259)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (259)
...... ....++.... .... .....+..+.+.|.+.+.+.+++ ++++++|++++..+ +.+.+.++++.
T Consensus 86 ~~~~~~-~~~~~~~~~~----~~~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~g~--- 154 (392)
T PRK08773 86 WDAGGG-GELGFDADTL----GREQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA-DRVRLRLDDGR--- 154 (392)
T ss_pred EeCCCC-ceEEechhcc----CCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC-CeEEEEECCCC---
Confidence 000000 0000000000 0000 11234577888888888888988 99999999998766 66778776654
Q ss_pred EEEEeCEEEEccCCCCC
Q 024975 151 EEETFDAVVVCNGHFSV 167 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~ 167 (259)
.+.+|.||.|+|.+|.
T Consensus 155 -~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 155 -RLEAALAIAADGAAST 170 (392)
T ss_pred -EEEeCEEEEecCCCch
Confidence 7899999999997664
No 108
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=102.85 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=85.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC-CCCCCCCCCCCCccccccccce-eccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLR-VNLPRELMG 79 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (259)
|.+|+|||+|++|++||+.|++.|.+|+||||+..+||+........ ..-++.... -.....+..+. .........
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYf--k~~~~~F~~~Ve~~~~~glV~ 78 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYF--KPRDELFLRAVEALRDDGLVD 78 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceee--cCCchHHHHHHHHHHhCCcee
Confidence 46899999999999999999999999999999999999876542111 110111000 00000111000 000000000
Q ss_pred -ecCCCCCccCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 80 -FQAYPFVARNY--EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 80 -~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
+..--|..... ....+...|..-..+....+..+ .+++ |.++++|+.+.+.+ +.|++..+++. ....||
T Consensus 79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA--tdL~--V~~~~rVt~v~~~~-~~W~l~~~~g~---~~~~~d 150 (331)
T COG3380 79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA--TDLT--VVLETRVTEVARTD-NDWTLHTDDGT---RHTQFD 150 (331)
T ss_pred eccccccccccCCCCCCCCCCccccCcchHHHHHHHh--ccch--hhhhhhhhhheecC-CeeEEEecCCC---cccccc
Confidence 00000000000 00111111422222322223222 3556 88999999999985 89999998766 478899
Q ss_pred EEEEccCC
Q 024975 157 AVVVCNGH 164 (259)
Q Consensus 157 ~VIlAtG~ 164 (259)
.||+|.=.
T Consensus 151 ~vvla~PA 158 (331)
T COG3380 151 DVVLAIPA 158 (331)
T ss_pred eEEEecCC
Confidence 99998653
No 109
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.49 E-value=3.4e-13 Score=106.31 Aligned_cols=202 Identities=19% Similarity=0.201 Sum_probs=125.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|||+|+|.+|++++..|-..-.+|+++.+..++- +++ ..|+...+
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl----FTP--------------------------LLpS~~vG-- 102 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL----FTP--------------------------LLPSTTVG-- 102 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceE----Eee--------------------------ccCCcccc--
Confidence 4789999999999999999999999999999875431 110 00000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC--CceEEEEeCEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV 159 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~ad~VI 159 (259)
+- ....+.+-....+.+.+.. .-.+..+.++++... +...+....++ .....+.||++|
T Consensus 103 --------------Tv---e~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~~-k~V~~~s~t~~~~~~e~~i~YDyLV 163 (491)
T KOG2495|consen 103 --------------TV---ELRSIVEPIRAIARKKNGE-VKYLEAECTKIDPDN-KKVHCRSLTADSSDKEFVIGYDYLV 163 (491)
T ss_pred --------------ce---eehhhhhhHHHHhhccCCC-ceEEecccEeecccc-cEEEEeeeccCCCcceeeecccEEE
Confidence 00 0044444445555444322 245677888887665 44444443333 344678999999
Q ss_pred EccCCCCCCccCCCCCCCCCCCceE---EcccC-------------CC---CCCCCCCeEEEEccCcCHHHHHHHHhcc-
Q 024975 160 VCNGHFSVPRLAQVPGIDSWPGKQM---HSHNY-------------RI---PNPFQDQVVILIGHYASGLDIKRDLAGF- 219 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~~~~~~~~~---~~~~~-------------~~---~~~~~~~~v~viG~G~~a~e~a~~l~~~- 219 (259)
+|+| ..++.+.+||..++....- +.... .. .....--+++|||||++|+|+|.+|...
T Consensus 164 iA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi 241 (491)
T KOG2495|consen 164 IAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFI 241 (491)
T ss_pred Eecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHH
Confidence 9999 7899999998876422111 11111 00 0111224699999999999999999743
Q ss_pred -------------cCeEEEEecCC---------CcccccCCCCCCCceEe--eeeeEEeec
Q 024975 220 -------------AKEVHIASRSV---------ADETHEKQPGYDNMWLH--SMVRTKKCS 256 (259)
Q Consensus 220 -------------~~~v~~~~r~~---------~~~~~~~~~~~~~~~~~--~~v~~~~~~ 256 (259)
..+||++.-.| --++.+....+.+|.+. +.|+.++..
T Consensus 242 ~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~ 302 (491)
T KOG2495|consen 242 PEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK 302 (491)
T ss_pred HHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCc
Confidence 23589998888 13344555555566654 667766654
No 110
>PRK06184 hypothetical protein; Provisional
Probab=99.48 E-value=6e-13 Score=112.79 Aligned_cols=161 Identities=20% Similarity=0.173 Sum_probs=88.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee---eeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
++||+||||||+|+++|..|+++|++|+|+|+.+.+.... ...++.. ...++..... ......+..........
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l-~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRV-VAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHH-HhcCccccceeEEeCCc
Confidence 5899999999999999999999999999999987653110 0000000 0000100000 00000000000000000
Q ss_pred cceecCCCCCccCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975 77 LMGFQAYPFVARNY---EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (259)
Q Consensus 77 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (259)
. +....+..... ..........++..+.+.|.+.+.+.+++ +++++++++++..+ +.+.+.+.+.++ ...+
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~i 155 (502)
T PRK06184 82 S--VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDA-DGVTARVAGPAG-EETV 155 (502)
T ss_pred e--EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcC-CcEEEEEEeCCC-eEEE
Confidence 0 00000000000 00000111234466778888888888888 99999999998776 567777643221 2479
Q ss_pred EeCEEEEccCCCCCCc
Q 024975 154 TFDAVVVCNGHFSVPR 169 (259)
Q Consensus 154 ~ad~VIlAtG~~s~~~ 169 (259)
++|+||.|+|.+|..+
T Consensus 156 ~a~~vVgADG~~S~vR 171 (502)
T PRK06184 156 RARYLVGADGGRSFVR 171 (502)
T ss_pred EeCEEEECCCCchHHH
Confidence 9999999999877543
No 111
>PRK11445 putative oxidoreductase; Provisional
Probab=99.48 E-value=7.3e-13 Score=107.23 Aligned_cols=156 Identities=16% Similarity=0.135 Sum_probs=84.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCccc-ccc-ccceeccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVHS-SLY-KSLRVNLPRELM 78 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~ 78 (259)
|+||+||||||+|+++|..|++. ++|+|+|+.+.++..-...+... ...+.. ..+.. ... .......+ ...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~----~l~~~~~~~L~~lgl~~~~~~~~~~-~~~ 74 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGG----LLAPDAQKSFAKDGLTLPKDVIANP-QIF 74 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcC----ccCHHHHHHHHHcCCCCCcceeecc-ccc
Confidence 58999999999999999999999 99999999864320000000000 000000 00000 000 00000000 000
Q ss_pred eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V 158 (259)
......+................|.+|.+.|.+.. ..+++ +++++++++++..+ +.|.+.+.. ++....+++|+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~i~a~~v 149 (351)
T PRK11445 75 AVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED-DGYHVIFRA-DGWEQHITARYL 149 (351)
T ss_pred eeeEecccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC-CEEEEEEec-CCcEEEEEeCEE
Confidence 00000010000000011112256788888888753 56788 99999999998876 678887642 122246899999
Q ss_pred EEccCCCCCC
Q 024975 159 VVCNGHFSVP 168 (259)
Q Consensus 159 IlAtG~~s~~ 168 (259)
|.|+|..|..
T Consensus 150 V~AdG~~S~v 159 (351)
T PRK11445 150 VGADGANSMV 159 (351)
T ss_pred EECCCCCcHH
Confidence 9999986654
No 112
>PRK09126 hypothetical protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=112.07 Aligned_cols=157 Identities=22% Similarity=0.225 Sum_probs=84.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC-------c-eeeeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------G-SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g-------g-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
|.+||+||||||+|+++|..|+++|++|+|+|+.+.+. | .....+... ...++.................
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 46899999999999999999999999999999987532 1 000000000 0000000000000000000000
Q ss_pred eccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
......... ..+.... ..........++..+.+.+.+.+. ..+++ ++++++|++++..+ +.+.|.++++.
T Consensus 82 ~~~~~~~~~---~~~~~~~-~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~-~~~~v~~~~g~-- 152 (392)
T PRK09126 82 VLNGRSPFA---LTFDARG-RGADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD-DGAQVTLANGR-- 152 (392)
T ss_pred EEcCCCCce---eEeehhh-cCCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC-CeEEEEEcCCC--
Confidence 000000000 0000000 000000111234556665555553 35788 99999999998765 66788877654
Q ss_pred eEEEEeCEEEEccCCCCCC
Q 024975 150 VEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~ 168 (259)
.+.+|+||.|+|..|..
T Consensus 153 --~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 153 --RLTARLLVAADSRFSAT 169 (392)
T ss_pred --EEEeCEEEEeCCCCchh
Confidence 79999999999976643
No 113
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.48 E-value=2.3e-13 Score=112.87 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=86.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC-----ceeeeCCCCC--CCCCCCCCCCCCccccccccceeccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP 74 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (259)
++||+||||||+|+++|..|++.|++|+|+|+.+.+. ......+... ...++..... .........+.....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI-LPQIGKFRQIRLSDA 96 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh-HhhcCCccEEEEEeC
Confidence 4799999999999999999999999999999987542 1121111100 0001110000 000000000000000
Q ss_pred cccceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975 75 RELMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (259)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (259)
.......+..... ......| ..+..+.+.|.+.+.+. +++ +++++++++++..+ +.+.|.+.+++ +...
T Consensus 97 -~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~-~~~~ 167 (415)
T PRK07364 97 -DYPGVVKFQPTDL----GTEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ-DAATVTLEIEG-KQQT 167 (415)
T ss_pred -CCCceeeeccccC----CCCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeeEEEEccCC-cceE
Confidence 0000000110000 0000001 22345677777766654 677 88899999998765 66778776432 2246
Q ss_pred EEeCEEEEccCCCCCCc
Q 024975 153 ETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~~ 169 (259)
+++|.||.|+|.+|..+
T Consensus 168 i~adlvIgADG~~S~vR 184 (415)
T PRK07364 168 LQSKLVVAADGARSPIR 184 (415)
T ss_pred EeeeEEEEeCCCCchhH
Confidence 99999999999877543
No 114
>PRK08013 oxidoreductase; Provisional
Probab=99.48 E-value=4.3e-13 Score=110.52 Aligned_cols=156 Identities=19% Similarity=0.107 Sum_probs=88.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee------e---eCCCCC--CCCCCCCCCCCCccccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW------I---YTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~------~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+.... . ..+... ...++....-.......+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 4799999999999999999999999999999987542100 0 000000 0000100000000000011111
Q ss_pred eccccccceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975 71 VNLPRELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (259)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (259)
......... ..+... ...... .....+..+.+.|.+.+.+. +++ ++++++|++++..+ +.+.+.+.++.
T Consensus 83 ~~~~~~~~~---~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~- 153 (400)
T PRK08013 83 VWDKDSFGR---IAFDDQ--SMGYSHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGE-NEAFLTLKDGS- 153 (400)
T ss_pred EEeCCCCce---EEEccc--ccCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeEEEEEcCCC-
Confidence 000000000 000000 000000 01245678888888887765 688 99999999998776 66778776654
Q ss_pred ceEEEEeCEEEEccCCCCCCc
Q 024975 149 VVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 149 ~~~~~~ad~VIlAtG~~s~~~ 169 (259)
.+++|+||.|+|.+|..+
T Consensus 154 ---~i~a~lvVgADG~~S~vR 171 (400)
T PRK08013 154 ---MLTARLVVGADGANSWLR 171 (400)
T ss_pred ---EEEeeEEEEeCCCCcHHH
Confidence 799999999999877654
No 115
>PRK07588 hypothetical protein; Provisional
Probab=99.48 E-value=2.5e-13 Score=111.77 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=87.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecccccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (259)
.||+||||||+|+++|..|++.|++|+|+|+.+... ..+...++.. ...++.... ..........+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~-l~~~~~~~~~~~~~~~~-g 78 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQ-LREAGYQIEHVRSVDPT-G 78 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHH-HHhccCCccceEEEcCC-C
Confidence 489999999999999999999999999999986542 2122111110 000000000 00000000011100000 0
Q ss_pred ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~ 157 (259)
..+..++...... .........++..+...|.+.+. .+++ ++++++|++++..+ +.+.|.++++. .+.+|.
T Consensus 79 ~~~~~~~~~~~~~-~~g~~~~~i~r~~l~~~L~~~~~-~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~d~ 149 (391)
T PRK07588 79 RRKADLNVDSFRR-MVGDDFTSLPRGDLAAAIYTAID-GQVE--TIFDDSIATIDEHR-DGVRVTFERGT----PRDFDL 149 (391)
T ss_pred CEEEEecHHHccc-cCCCceEEEEHHHHHHHHHHhhh-cCeE--EEeCCEEeEEEECC-CeEEEEECCCC----EEEeCE
Confidence 0011111110000 00011112456777777766543 3677 99999999998876 67888887765 679999
Q ss_pred EEEccCCCCCCcc
Q 024975 158 VVVCNGHFSVPRL 170 (259)
Q Consensus 158 VIlAtG~~s~~~~ 170 (259)
||.|+|.+|..+.
T Consensus 150 vIgADG~~S~vR~ 162 (391)
T PRK07588 150 VIGADGLHSHVRR 162 (391)
T ss_pred EEECCCCCccchh
Confidence 9999998776654
No 116
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.48 E-value=7e-13 Score=109.01 Aligned_cols=141 Identities=18% Similarity=0.087 Sum_probs=85.3
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
||+||||||+|+++|+.|.+.|.+|+|+|+++..++.....-. .... ..................+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 69 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVW------DDDL-----SDLGLADCVEHVWPDVYEYRFP 69 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCcccccc------Hhhh-----hhhchhhHHhhcCCCceEEecC
Confidence 7999999999999999999999999999998777654322100 0000 0000000000000000000000
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccC
Q 024975 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG 163 (259)
..... .........+..+.+.+.+.+.+.+++ ++ ..+|+.+...+++.+.|.++++. .++++.||+|+|
T Consensus 70 ~~~~~----~~~~~~~i~~~~l~~~l~~~~~~~gv~--~~-~~~v~~i~~~~~~~~~v~~~~g~----~~~a~~VI~A~G 138 (388)
T TIGR01790 70 KQPRK----LGTAYGSVDSTRLHEELLQKCPEGGVL--WL-ERKAIHAEADGVALSTVYCAGGQ----RIQARLVIDARG 138 (388)
T ss_pred Ccchh----cCCceeEEcHHHHHHHHHHHHHhcCcE--EE-ccEEEEEEecCCceeEEEeCCCC----EEEeCEEEECCC
Confidence 00000 001111245688889999888888876 54 66888888764367888877653 799999999999
Q ss_pred CCC
Q 024975 164 HFS 166 (259)
Q Consensus 164 ~~s 166 (259)
.++
T Consensus 139 ~~s 141 (388)
T TIGR01790 139 FGP 141 (388)
T ss_pred Cch
Confidence 765
No 117
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.48 E-value=1.1e-12 Score=107.87 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=83.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCC-CCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE-TESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+||+||||||+|+++|..|+++|++|+|+|+....+..|...-. .....++.... ... .....+....+.. ..+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~--~~~-~~i~~~~~~~p~~-~~~- 75 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRD--IID-RRVTKMKMISPSN-IAV- 75 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchh--HHH-hhhceeEEecCCc-eEE-
Confidence 58999999999999999999999999999997654322211000 00000000000 000 0000111111110 000
Q ss_pred CCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe--CCCcEEEEEEecC-----CceEEE
Q 024975 82 AYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKD-----DVVEEE 153 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~-----~~~~~~ 153 (259)
.+. .. ...... ....+..|.++|.+.+.+.|++ ++.+ +++++... .++.+.|.....+ ++...+
T Consensus 76 ~~~--~~---~~~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i 147 (398)
T TIGR02028 76 DIG--RT---LKEHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTL 147 (398)
T ss_pred Eec--cC---CCCCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEE
Confidence 000 00 000111 1257789999999999999998 7666 47776532 2245666653211 233579
Q ss_pred EeCEEEEccCCCCC
Q 024975 154 TFDAVVVCNGHFSV 167 (259)
Q Consensus 154 ~ad~VIlAtG~~s~ 167 (259)
+++.||.|+|..|.
T Consensus 148 ~a~~VIgADG~~S~ 161 (398)
T TIGR02028 148 EVDAVIGADGANSR 161 (398)
T ss_pred EeCEEEECCCcchH
Confidence 99999999997553
No 118
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.48 E-value=3.3e-13 Score=111.52 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcC-----ceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVG-----GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN 72 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~g-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
++||+||||||+|+++|..|+++| ++|+|+|+.+... ......++.. ...++....- .........+...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~-~~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEI-APEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhh-hhhcCcccEEEEE
Confidence 589999999999999999999995 9999999986421 1111110000 0001110000 0000000000000
Q ss_pred ccc--ccceecCCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 73 LPR--ELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 73 ~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
... .........+... ....... ....+..+.+.|.+.+.+.+++ ++++++|+++...+ +.+.+.+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~-- 152 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD-EGVTVTLSDGS-- 152 (403)
T ss_pred eCCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CEEEEEECCCC--
Confidence 000 0000000000000 0000111 1245688899999988888998 99999999998776 66778776654
Q ss_pred eEEEEeCEEEEccCCCCC
Q 024975 150 VEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~ 167 (259)
.+.+|.||.|+|.+|.
T Consensus 153 --~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 153 --VLEARLLVAADGARSK 168 (403)
T ss_pred --EEEeCEEEEcCCCChH
Confidence 7899999999997664
No 119
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.47 E-value=3.9e-13 Score=110.43 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=87.3
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc--------eeeeCCCCC--CCCCCCCCCCCCccccccccceecc
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--------SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL 73 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg--------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (259)
||+||||||+|+++|..|+++|++|+|+|+.+.++. .....+... ...++...............+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999976531 111110000 0000100000000000000000000
Q ss_pred ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (259)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (259)
......+ .++.... . ........++..+.+.|.+.+.+.+ ++ ++++++|+++...+ +.+.+.++++. .
T Consensus 81 ~~~~~~~-~~~~~~~--~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~ 149 (385)
T TIGR01988 81 GGSFGAL-HFDADEI--G-LEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS-DHVELTLDDGQ----Q 149 (385)
T ss_pred CCCCceE-Eechhhc--C-CCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC-CeeEEEECCCC----E
Confidence 0000000 0000000 0 0000112455788888888887776 77 99999999998776 67778777654 6
Q ss_pred EEeCEEEEccCCCCCC
Q 024975 153 ETFDAVVVCNGHFSVP 168 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~ 168 (259)
+.+|.||.|+|.+|..
T Consensus 150 ~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 150 LRARLLVGADGANSKV 165 (385)
T ss_pred EEeeEEEEeCCCCCHH
Confidence 9999999999987653
No 120
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.47 E-value=5.2e-13 Score=109.51 Aligned_cols=157 Identities=21% Similarity=0.231 Sum_probs=90.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCc---CceeeeCCCCC--CCCCCCCCCCCCccccccccceeccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP 74 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (259)
+++||+||||||+|+++|..|.+.|++|+|+|+. ..+ |......+... ...++............+........
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence 4789999999999999999999999999999997 221 11111111000 01111100000000000000000000
Q ss_pred cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEE-ecCCceEE
Q 024975 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEE 152 (259)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~ 152 (259)
.. ....+..... .........++..+...|.+.+.+.+ ++ ++.+++|+.++.++ +.+.+++. +|. .
T Consensus 81 ~~--~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~-~~v~v~l~~dG~----~ 148 (387)
T COG0654 81 GR--RLLIFDAAEL---GRGALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDG-DGVTVTLSFDGE----T 148 (387)
T ss_pred Cc--eeEEeccccc---CCCcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcC-CceEEEEcCCCc----E
Confidence 00 0000010000 00111122355888899999887765 78 99999999999987 66778888 543 8
Q ss_pred EEeCEEEEccCCCCCCc
Q 024975 153 ETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~~ 169 (259)
+.||.||.|.|.+|..+
T Consensus 149 ~~a~llVgADG~~S~vR 165 (387)
T COG0654 149 LDADLLVGADGANSAVR 165 (387)
T ss_pred EecCEEEECCCCchHHH
Confidence 99999999999877654
No 121
>PRK07045 putative monooxygenase; Reviewed
Probab=99.47 E-value=6.3e-13 Score=109.22 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
++||+||||||+|+++|..|+++|++|+|+|+.+.+. +.....++.. ....+...............+.... .
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~--~ 82 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYH--D 82 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEec--C
Confidence 3699999999999999999999999999999987652 1111111000 0000000000000000000000000 0
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCc-EEEEEEecCCceEEEE
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEET 154 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~ 154 (259)
...+..+++... .........++..+.+.|.+.+.. .+++ ++++++|+++...+++. +.|.+.++. .+.
T Consensus 83 g~~~~~~~~~~~---~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~----~~~ 153 (388)
T PRK07045 83 KELIASLDYRSA---SALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGE----RVA 153 (388)
T ss_pred CcEEEEecCCcc---ccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCC----EEE
Confidence 000111111100 000111224567788878777654 4677 99999999999876342 457766554 789
Q ss_pred eCEEEEccCCCCCCc
Q 024975 155 FDAVVVCNGHFSVPR 169 (259)
Q Consensus 155 ad~VIlAtG~~s~~~ 169 (259)
+|.||.|+|..|..+
T Consensus 154 ~~~vIgADG~~S~vR 168 (388)
T PRK07045 154 PTVLVGADGARSMIR 168 (388)
T ss_pred CCEEEECCCCChHHH
Confidence 999999999877544
No 122
>PRK07190 hypothetical protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=109.79 Aligned_cols=158 Identities=17% Similarity=0.087 Sum_probs=86.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce--ee-eCCCCC--CCCCCCCCCCCCcc-ccccccceecccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS--WI-YTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPR 75 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~--~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 75 (259)
.+||+||||||+|+++|..|.++|++|+|+|+.+.+... .. ..+... ....+.... +.. .............
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~--l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDE--LYPLGKPCNTSSVWANG 82 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHH--HHhhCccceeEEEecCC
Confidence 479999999999999999999999999999998765311 10 000000 000000000 000 0000000000000
Q ss_pred ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
.........+... ...........+...+.+.|.+.+.+.|++ ++++++|+++...+ +.+.+.+.++. .+++
T Consensus 83 ~~i~~~~~~~~~~-~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~-~~v~v~~~~g~----~v~a 154 (487)
T PRK07190 83 KFISRQSSWWEEL-EGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ-AGCLTTLSNGE----RIQS 154 (487)
T ss_pred ceEeeccccCccC-CcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeeEEEECCCc----EEEe
Confidence 0000000000000 000000011123466777888888888998 99999999999876 56666665543 7999
Q ss_pred CEEEEccCCCCCCc
Q 024975 156 DAVVVCNGHFSVPR 169 (259)
Q Consensus 156 d~VIlAtG~~s~~~ 169 (259)
++||.|+|..|..+
T Consensus 155 ~~vVgADG~~S~vR 168 (487)
T PRK07190 155 RYVIGADGSRSFVR 168 (487)
T ss_pred CEEEECCCCCHHHH
Confidence 99999999766443
No 123
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.47 E-value=4.8e-13 Score=111.25 Aligned_cols=111 Identities=22% Similarity=0.333 Sum_probs=77.2
Q ss_pred HHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE--eCEEEEccCCCCCCccCCCCCCCCCCCceEEcc
Q 024975 110 QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET--FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH 187 (259)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~--ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~ 187 (259)
.+++.+.+++ ++.+++|++++..+ +.+.+.... ++ ..+. ||+||+||| +.|+.|.++|.+.- ......
T Consensus 51 ~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~-~~--~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--~v~~~~ 120 (427)
T TIGR03385 51 EVFIKKRGID--VKTNHEVIEVNDER-QTVVVRNNK-TN--ETYEESYDYLILSPG--ASPIVPNIEGINLD--IVFTLR 120 (427)
T ss_pred HHHHHhcCCe--EEecCEEEEEECCC-CEEEEEECC-CC--CEEecCCCEEEECCC--CCCCCCCCCCcCCC--CEEEEC
Confidence 3445677888 88899999998654 434443221 11 2466 999999999 78888888886521 111111
Q ss_pred cCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 188 NYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 188 ~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..... ....+++++|+|+|++|+|+|..|.+.+.+|+++.|.+
T Consensus 121 ~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 121 NLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 11000 01345899999999999999999999999999999987
No 124
>PLN02463 lycopene beta cyclase
Probab=99.46 E-value=5.8e-13 Score=110.12 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=84.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+||+||||||+|+++|..|++.|++|+|+|+.+... |..+... .... +......+.+...-+....-+.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~--~p~~~g~-----w~~~---l~~lgl~~~l~~~w~~~~v~~~ 97 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI--WPNNYGV-----WVDE---FEALGLLDCLDTTWPGAVVYID 97 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch--hccccch-----HHHH---HHHCCcHHHHHhhCCCcEEEEe
Confidence 4799999999999999999999999999999975321 1110000 0000 0000000000000000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+... .. .........+.++.+.+.+.+.+.+++ ++ ..+|+++...+ +.+.|.++++. .+.+|.||+|
T Consensus 98 ~~~~-~~----~~~~y~~V~R~~L~~~Ll~~~~~~GV~--~~-~~~V~~I~~~~-~~~~V~~~dG~----~i~A~lVI~A 164 (447)
T PLN02463 98 DGKK-KD----LDRPYGRVNRKKLKSKMLERCIANGVQ--FH-QAKVKKVVHEE-SKSLVVCDDGV----KIQASLVLDA 164 (447)
T ss_pred CCCC-cc----ccCcceeEEHHHHHHHHHHHHhhcCCE--EE-eeEEEEEEEcC-CeEEEEECCCC----EEEcCEEEEC
Confidence 0000 00 011122246788989998888888887 54 57999998876 66888887764 7999999999
Q ss_pred cCCCCC
Q 024975 162 NGHFSV 167 (259)
Q Consensus 162 tG~~s~ 167 (259)
+|..+.
T Consensus 165 dG~~s~ 170 (447)
T PLN02463 165 TGFSRC 170 (447)
T ss_pred cCCCcC
Confidence 997553
No 125
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.46 E-value=5.4e-13 Score=109.68 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=85.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCCCCCCCCCCCC-CCccc-ccccccee--cc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETESDPLGVDPNR-YPVHS-SLYKSLRV--NL 73 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~--~~ 73 (259)
|.+||+||||||+|+++|+.|.+.|++|+|+|+.+.+.. .|.. ... ...+.. ..+.. ...+.+.. ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~--r~~----~l~~~~~~~l~~~g~~~~~~~~~~~ 77 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDS--RVY----AISPSSQAFLERLGVWQALDAARLA 77 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCC--ceE----eecHHHHHHHHHcCchhhhhhhcCC
Confidence 568999999999999999999999999999999876532 1100 000 000000 00000 00000000 00
Q ss_pred ccccceecC-----CCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975 74 PRELMGFQA-----YPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (259)
Q Consensus 74 ~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (259)
+...+.+.+ ..+... ........ ...+..+.+.|.+.+.+.+ ++ ++ +++|+++...+ +.+.+.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g 151 (388)
T PRK07608 78 PVYDMRVFGDAHARLHFSAY--QAGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP-DAATLTLADG 151 (388)
T ss_pred cceEEEEEECCCceeEeecc--ccCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC-CeEEEEECCC
Confidence 000000000 000000 00000001 1235778888888887776 76 66 88999998765 6688887765
Q ss_pred CCceEEEEeCEEEEccCCCCCC
Q 024975 147 DDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 147 ~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
. .+.+|.||.|+|.+|..
T Consensus 152 ~----~~~a~~vI~adG~~S~v 169 (388)
T PRK07608 152 Q----VLRADLVVGADGAHSWV 169 (388)
T ss_pred C----EEEeeEEEEeCCCCchH
Confidence 4 79999999999987653
No 126
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.46 E-value=1.6e-12 Score=107.99 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=84.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc----CceeeeCCCCCCCCCCCCCCCCCccccccccceeccccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
|++||+||||||+|+++|..|+++|++|+|+|+.... |+..... ....++... .... .....+....+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~--~~~~-~~i~~~~~~~p~~ 111 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPL--DIID-RKVTKMKMISPSN 111 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcH--HHHH-HHhhhheEecCCc
Confidence 4689999999999999999999999999999997432 1111100 000000000 0000 0000000001110
Q ss_pred cceecCCCCCccCCCCCCCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEec-----
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK----- 146 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g----- 146 (259)
. . .++.. ......| ..|..|.++|.+.+.+.|++ ++.. +++++.... ++.+.|.+.+.
T Consensus 112 ~-~-v~~~~-------~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~ 179 (450)
T PLN00093 112 V-A-VDIGK-------TLKPHEYIGMVRREVLDSFLRERAQSNGAT--LING-LFTRIDVPKDPNGPYVIHYTSYDSGSG 179 (450)
T ss_pred e-E-EEecc-------cCCCCCeEEEecHHHHHHHHHHHHHHCCCE--EEec-eEEEEEeccCCCCcEEEEEEecccccc
Confidence 0 0 00000 0011122 57789999999999989998 7654 577776432 24567776542
Q ss_pred CCceEEEEeCEEEEccCCCCC
Q 024975 147 DDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 147 ~~~~~~~~ad~VIlAtG~~s~ 167 (259)
+++...+.+|.||.|+|..|.
T Consensus 180 ~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 180 AGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred CCCccEEEeCEEEEcCCcchH
Confidence 122357999999999997664
No 127
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.46 E-value=7.2e-13 Score=109.25 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=90.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (259)
|..+|+||||||+|+++|..|+++|++|+|+|+.+.+. ......++.. ...++........ ......+......
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~-~~~~~~~~~~~g~ 79 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGT-GVTPKALYLMDGR 79 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhc-ccCcceEEEecCC
Confidence 56899999999999999999999999999999987542 2222111110 0000100000000 0000000000000
Q ss_pred ccceecCCCCCccCCCCCCCCCCC--CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975 76 ELMGFQAYPFVARNYEGSVDLRRY--PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (259)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (259)
............. ....+...| .++..+.+.|.+.+.+. +++ ++++++|+++...+ +.+.+++.++++. +.
T Consensus 80 ~~~~~~~~~~~~~--~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~-~~v~v~~~~~~~~-~~ 153 (400)
T PRK06475 80 KARPLLAMQLGDL--ARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG-NSITATIIRTNSV-ET 153 (400)
T ss_pred CcceEEEecchhh--hhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC-CceEEEEEeCCCC-cE
Confidence 0000000000000 000111112 46788888888877654 677 99999999998765 6677777543221 36
Q ss_pred EEeCEEEEccCCCCCCcc
Q 024975 153 ETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~~~ 170 (259)
+.+|.||.|.|.+|..+.
T Consensus 154 ~~adlvIgADG~~S~vR~ 171 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRA 171 (400)
T ss_pred EecCEEEECCCccHhHHh
Confidence 899999999998876543
No 128
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.45 E-value=4.3e-13 Score=110.35 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=85.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---c-ee-----eeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---G-SW-----IYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g-~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
.+||+||||||+|+++|..|++.|++|+|+|+.+... + .. ...+... ...++............+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 5899999999999999999999999999999975321 0 00 0000000 0000000000000000000000
Q ss_pred eccc-cccceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecC
Q 024975 71 VNLP-RELMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (259)
Q Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~ 147 (259)
.... .....+..... ......| ..+..+.+.|.+.+.+. +++ ++++++|+++...+ +.+.|.+.++.
T Consensus 85 ~~~~~~~~~~~~~~~~-------~~~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~ 154 (391)
T PRK08020 85 TWEWETAHVVFDAAEL-------KLPELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD-DGWELTLADGE 154 (391)
T ss_pred EEeCCCCeEEeccccc-------CCCccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC-CeEEEEECCCC
Confidence 0000 00000000000 0001111 34577888888877666 787 88899999998765 66888877654
Q ss_pred CceEEEEeCEEEEccCCCCCC
Q 024975 148 DVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 148 ~~~~~~~ad~VIlAtG~~s~~ 168 (259)
.+++|.||.|+|.+|..
T Consensus 155 ----~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 155 ----EIQAKLVIGADGANSQV 171 (391)
T ss_pred ----EEEeCEEEEeCCCCchh
Confidence 79999999999987643
No 129
>PRK07236 hypothetical protein; Provisional
Probab=99.44 E-value=1.9e-12 Score=106.28 Aligned_cols=146 Identities=18% Similarity=0.131 Sum_probs=81.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc----CceeeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (259)
+++|+|||||++|+++|..|.+.|++|+|+|+.+.. |+.....+... ...++.... .....+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~-----------~~~~~~~ 74 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALP-----------ADIGVPS 74 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcc-----------cccccCc
Confidence 579999999999999999999999999999998642 11111111000 000011000 0000000
Q ss_pred ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
....+.+...... ...........+..+.+.|.+.+ .+.+ ++++++|++++..+ +.+++.+.++. .+.+
T Consensus 75 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a 143 (386)
T PRK07236 75 RERIYLDRDGRVV--QRRPMPQTQTSWNVLYRALRAAF--PAER--YHLGETLVGFEQDG-DRVTARFADGR----RETA 143 (386)
T ss_pred cceEEEeCCCCEe--eccCCCccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEe
Confidence 0000000000000 00000111123445555544332 1344 89999999998775 67888888765 7999
Q ss_pred CEEEEccCCCCCCc
Q 024975 156 DAVVVCNGHFSVPR 169 (259)
Q Consensus 156 d~VIlAtG~~s~~~ 169 (259)
|.||.|.|..|..+
T Consensus 144 d~vIgADG~~S~vR 157 (386)
T PRK07236 144 DLLVGADGGRSTVR 157 (386)
T ss_pred CEEEECCCCCchHH
Confidence 99999999877654
No 130
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.44 E-value=3e-12 Score=107.62 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=87.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC--cCceeeeCCCCCCCCCCCCCC--CCCccccccccce-------
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSWIYTSETESDPLGVDPN--RYPVHSSLYKSLR------- 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~--~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------- 70 (259)
.+||+|||+|++|+++|..|++.|.+|+|+||.+. .||.................. ...-....+..+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 57999999999999999999999999999999874 455433221110000000000 0000000000000
Q ss_pred ---------ecccccccee-c--CCCCCccCCCCC--CCCCC-C-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975 71 ---------VNLPRELMGF-Q--AYPFVARNYEGS--VDLRR-Y-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (259)
Q Consensus 71 ---------~~~~~~~~~~-~--~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (259)
.... +...+ . ..++........ ..... + .....+...|.+.+++.+++ ++++++|+++..+
T Consensus 84 ~~~~~~~~~~~s~-~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~~ 160 (466)
T PRK08274 84 DEALARLLIRESS-DCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTALELD 160 (466)
T ss_pred CHHHHHHHHHcCH-HHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEec
Confidence 0000 00000 0 011110000000 00000 1 11356778888888888998 9999999999876
Q ss_pred CCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 135 ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 135 ~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
++..+.+...+.++....+.++.||+|||.+..
T Consensus 161 ~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 161 DGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred CCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 533344555433344457899999999997554
No 131
>PRK06126 hypothetical protein; Provisional
Probab=99.44 E-value=9.4e-12 Score=106.64 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCCc
Q 024975 100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 100 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~~ 169 (259)
.++..+...|.+.+.+. +++ ++++++|+++...+ +.+.+.+.+ .+++...+.+|+||.|+|.+|..+
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR 191 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDA-DGVTATVEDLDGGESLTIRADYLVGCDGARSAVR 191 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECC-CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHH
Confidence 34566777888877664 788 99999999999876 556676655 234446799999999999877543
No 132
>PRK07538 hypothetical protein; Provisional
Probab=99.43 E-value=3.6e-12 Score=105.59 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=86.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCcc-ccccccceeccccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPRE 76 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 76 (259)
+||+||||||+|+++|..|.++|++|+|+|+.+.+. ......++.. ...++.... +.. ......+......
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~~~~~~~~~~~~~~- 77 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAIGIRTRELAYFNRH- 77 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhhCCCCcceEEEcCC-
Confidence 489999999999999999999999999999987542 1111111000 000000000 000 0000000000000
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEE
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEET 154 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ 154 (259)
...+...+.... .....+....++..+.+.|.+.+.+ .+.. .++++++|+++...+ +.+.+.+.++. ++..+++
T Consensus 78 g~~~~~~~~~~~--~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~-~i~~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~~ 153 (413)
T PRK07538 78 GQRIWSEPRGLA--AGYDWPQYSIHRGELQMLLLDAVRERLGPD-AVRTGHRVVGFEQDA-DVTVVFLGDRAGGDLVSVR 153 (413)
T ss_pred CCEEeeccCCcc--cCCCCceEEEEHHHHHHHHHHHHHhhcCCc-EEEcCCEEEEEEecC-CceEEEEeccCCCccceEE
Confidence 000000000000 0000111124678888888877754 3532 289999999998776 44566665532 3345799
Q ss_pred eCEEEEccCCCCCCc
Q 024975 155 FDAVVVCNGHFSVPR 169 (259)
Q Consensus 155 ad~VIlAtG~~s~~~ 169 (259)
+|.||.|+|..|..+
T Consensus 154 adlvIgADG~~S~vR 168 (413)
T PRK07538 154 GDVLIGADGIHSAVR 168 (413)
T ss_pred eeEEEECCCCCHHHh
Confidence 999999999877544
No 133
>PRK06753 hypothetical protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=107.12 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=85.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecccccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (259)
.||+||||||+|+++|..|++.|++|+|+|+.+.+. ......++.. ....+.... ..........+....+. .
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~-~~~~~~~~~~~~~~~~~-g 78 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG-IKNAGQILSTMNLLDDK-G 78 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH-HHhcCCcccceeEEcCC-C
Confidence 389999999999999999999999999999987653 1111111000 000000000 00000000000000000 0
Q ss_pred ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (259)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~ 157 (259)
..+...++. ........++..+...|.+.+. +.+ ++++++|++++..+ +.+.++++++. .+.+|.
T Consensus 79 ~~~~~~~~~------~~~~~~~i~R~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~~~ 143 (373)
T PRK06753 79 TLLNKVKLK------SNTLNVTLHRQTLIDIIKSYVK--EDA--IFTGKEVTKIENET-DKVTIHFADGE----SEAFDL 143 (373)
T ss_pred CEEeecccc------cCCccccccHHHHHHHHHHhCC--Cce--EEECCEEEEEEecC-CcEEEEECCCC----EEecCE
Confidence 000011110 0111122466777777777654 344 89999999998765 67888887764 789999
Q ss_pred EEEccCCCCCCc
Q 024975 158 VVVCNGHFSVPR 169 (259)
Q Consensus 158 VIlAtG~~s~~~ 169 (259)
||.|+|.+|..+
T Consensus 144 vigadG~~S~vR 155 (373)
T PRK06753 144 CIGADGIHSKVR 155 (373)
T ss_pred EEECCCcchHHH
Confidence 999999776544
No 134
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.42 E-value=7.2e-13 Score=108.71 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=85.9
Q ss_pred eEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCce-------eeeCCCCC--CCCCCCCCCCCCccccccccceecc
Q 024975 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGS-------WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL 73 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (259)
||+||||||+|+++|..|.++| ++|+|+|+.+.+.-. ....++.. ...++....-... ......+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~-~~~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPF-ATPILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhh-cCccceEEEEc
Confidence 7999999999999999999999 999999998654211 00000000 0000110000000 00000000000
Q ss_pred c--cccceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 74 P--RELMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 74 ~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
. .....+ ..... ......| ..+..+.+.|.+.+.+. +++ ++++++|+++...+ +.+++.++++.
T Consensus 80 ~~~~~~~~~---~~~~~----~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~g~-- 147 (382)
T TIGR01984 80 QGHFGATHL---RASEF----GLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ-DYVRVTLDNGQ-- 147 (382)
T ss_pred CCCCceEEe---chhhc----CCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC-CeEEEEECCCC--
Confidence 0 000000 00000 0000111 34578888888888774 888 89999999998776 66888876654
Q ss_pred eEEEEeCEEEEccCCCCC
Q 024975 150 VEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~ 167 (259)
.+.+|.||.|+|.+|.
T Consensus 148 --~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 148 --QLRAKLLIAADGANSK 163 (382)
T ss_pred --EEEeeEEEEecCCChH
Confidence 7999999999998764
No 135
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.42 E-value=2.5e-12 Score=105.75 Aligned_cols=158 Identities=23% Similarity=0.282 Sum_probs=85.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc------CceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN 72 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
|++||+||||||+|+++|..|++.|++|+|+|+.+.. ++.. ..++.. ...++....-. ........+...
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~-l~~~~~~~l~~lGl~~~l~-~~~~~~~~~~~~ 78 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGV-LEQGTVDLLREAGVGERMD-REGLVHDGIELR 78 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeE-ECHhHHHHHHHcCChHHHH-hcCCccCcEEEE
Confidence 6789999999999999999999999999999998642 1111 111000 00011100000 000000000000
Q ss_pred cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (259)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (259)
.... ....++... ........+ ++..+.+.|.+.+.+.+++ +++++++++++..+++...|.+.. +++...
T Consensus 79 ~~g~---~~~~~~~~~--~~~~~~~~~-~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~-~G~~~~ 149 (392)
T PRK08243 79 FDGR---RHRIDLTEL--TGGRAVTVY-GQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEK-DGEEHR 149 (392)
T ss_pred ECCE---EEEeccccc--cCCceEEEe-CcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEc-CCeEEE
Confidence 0000 001111100 000001112 2345566666666667888 999999999986332455666642 233357
Q ss_pred EEeCEEEEccCCCCCCc
Q 024975 153 ETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 153 ~~ad~VIlAtG~~s~~~ 169 (259)
+++|+||.|+|..|..+
T Consensus 150 i~ad~vVgADG~~S~vR 166 (392)
T PRK08243 150 LDCDFIAGCDGFHGVSR 166 (392)
T ss_pred EEeCEEEECCCCCCchh
Confidence 89999999999887654
No 136
>PRK05868 hypothetical protein; Validated
Probab=99.42 E-value=1e-12 Score=107.06 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=84.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
|+||+||||||+|+++|..|+++|++|+|+|+.+.+.. .....+... ...++.... ..........+......
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~-~~~~~~~~~~~~~~~~~- 78 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA-AQEHKTRIRGASFVDRD- 78 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHH-HHhhccCccceEEEeCC-
Confidence 57999999999999999999999999999999876531 111111000 000010000 00000000000000000
Q ss_pred cceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
...+........ ....... ..-..+.++.+.+.+.+ ..+++ ++++++|++++..+ +.+.|.++++. ++++
T Consensus 79 g~~~~~~~~~~~-~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~dg~----~~~a 149 (372)
T PRK05868 79 GNELFRDTESTP-TGGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG-DSVRVTFERAA----AREF 149 (372)
T ss_pred CCEEeecccccc-cCCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC-CeEEEEECCCC----eEEe
Confidence 000000000000 0000000 00122455666554433 34777 99999999998764 67888888765 7899
Q ss_pred CEEEEccCCCCCCc
Q 024975 156 DAVVVCNGHFSVPR 169 (259)
Q Consensus 156 d~VIlAtG~~s~~~ 169 (259)
|.||.|.|..|..+
T Consensus 150 dlvIgADG~~S~vR 163 (372)
T PRK05868 150 DLVIGADGLHSNVR 163 (372)
T ss_pred CEEEECCCCCchHH
Confidence 99999999877654
No 137
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.42 E-value=1.2e-12 Score=107.30 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=83.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc----Cc----e-eeeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GG----S-WIYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~----gg----~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
++||+||||||+|+++|..|++.|++|+|+|+.+.. .+ . ....++.. ...++....-.......+..+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 479999999999999999999999999999986411 00 0 01111000 0001100000000000000000
Q ss_pred ecc-ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975 71 VNL-PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (259)
Q Consensus 71 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (259)
... ......+....... .... ....+..+...|.+.+.+. +++ ++++++|++++..+ +.+.++++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~-----~~~g-~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~-~~~~v~~~~g~- 152 (384)
T PRK08849 83 TWEHPECRTRFHSDELNL-----DQLG-YIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA-EGNRVTLESGA- 152 (384)
T ss_pred EEeCCCceEEecccccCC-----CccE-EEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC-CeEEEEECCCC-
Confidence 000 00000010000000 0000 1122345666665655443 577 89999999998876 66788887765
Q ss_pred ceEEEEeCEEEEccCCCCCCc
Q 024975 149 VVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 149 ~~~~~~ad~VIlAtG~~s~~~ 169 (259)
.+++|.||.|+|..|..+
T Consensus 153 ---~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 153 ---EIEAKWVIGADGANSQVR 170 (384)
T ss_pred ---EEEeeEEEEecCCCchhH
Confidence 899999999999877544
No 138
>PLN02697 lycopene epsilon cyclase
Probab=99.42 E-value=5.3e-12 Score=106.14 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=81.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
++||+||||||+|+++|..|++.|++|+|+|+.......+-.+.. .....+... .+. ..+.......+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~---~i~-~~w~~~~v~~~------- 175 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLED---CIE-HVWRDTIVYLD------- 175 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHH---HHH-hhcCCcEEEec-------
Confidence 489999999999999999999999999999986333211100000 000000000 000 00000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEE-EEEecCCceEEEEeCEEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~ad~VIl 160 (259)
+. ... ..........+..|.+.+.+.+.+.+++ + ++++|+++...+ +.+.+ ...++. .+.++.||+
T Consensus 176 ~~--~~~---~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~-~~~~vv~~~dG~----~i~A~lVI~ 242 (529)
T PLN02697 176 DD--KPI---MIGRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEAS-DGLRLVACEDGR----VIPCRLATV 242 (529)
T ss_pred CC--cee---eccCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcC-CcEEEEEEcCCc----EEECCEEEE
Confidence 00 000 0001111256688889998888888887 5 678999998765 44443 344443 799999999
Q ss_pred ccCCCC
Q 024975 161 CNGHFS 166 (259)
Q Consensus 161 AtG~~s 166 (259)
|+|.++
T Consensus 243 AdG~~S 248 (529)
T PLN02697 243 ASGAAS 248 (529)
T ss_pred CCCcCh
Confidence 999876
No 139
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.41 E-value=3.1e-12 Score=109.58 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=87.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccc-cccccceecccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHS-SLYKSLRVNLPR 75 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 75 (259)
++||+||||||+|+++|..|.+.|++|+|+|+.+.+.. .+...+... ...++.... +... ..+.........
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGER--MVDKGVSWNVGKVFLRD 100 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHH--HHhhCceeeceeEEeCC
Confidence 47999999999999999999999999999999875532 111111000 000011000 0000 000000000000
Q ss_pred ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (259)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (259)
.....+...... ..........++..+.++|.+.+.+. +++ +++++++++++..+ +.+.+.+.+.++ ...+.
T Consensus 101 --~~~~~~~~~~~~-~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~i~ 173 (547)
T PRK08132 101 --EEVYRFDLLPEP-GHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD-DGVTLTVETPDG-PYTLE 173 (547)
T ss_pred --CeEEEecCCCCC-CCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC-CEEEEEEECCCC-cEEEE
Confidence 000001100000 00000111134567778888888765 577 99999999999876 667776654332 24689
Q ss_pred eCEEEEccCCCCCC
Q 024975 155 FDAVVVCNGHFSVP 168 (259)
Q Consensus 155 ad~VIlAtG~~s~~ 168 (259)
+|+||.|+|.+|..
T Consensus 174 ad~vVgADG~~S~v 187 (547)
T PRK08132 174 ADWVIACDGARSPL 187 (547)
T ss_pred eCEEEECCCCCcHH
Confidence 99999999977654
No 140
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.41 E-value=2.5e-12 Score=105.78 Aligned_cols=157 Identities=21% Similarity=0.157 Sum_probs=85.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc--eeeeCCCCC--CCCCCCCCCCCCccccccccceecccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (259)
.+||+||||||+|+++|..|.++|++|+|+|+.+.+.. .+...+... ....+.... .......+..+........
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~-~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWAR-LAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhh-hHhhcceeeEEEEEeCCCC
Confidence 36999999999999999999999999999999865421 010000000 000000000 0000000000000000000
Q ss_pred -ceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975 78 -MGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a 155 (259)
.......+... ........ ..++..+.+.|.+.+.+.+.. .+++++|++++..+ +.|.++++++. .+++
T Consensus 86 ~~~~~~~~~~~~--~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a 156 (388)
T PRK07494 86 LIRAPEVRFRAA--EIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRE-DEVTVTLADGT----TLSA 156 (388)
T ss_pred CCCCceEEEcHH--hcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcC-CeEEEEECCCC----EEEE
Confidence 00000000000 00000111 134577888888877766544 57799999998766 67888877654 7999
Q ss_pred CEEEEccCCCCCC
Q 024975 156 DAVVVCNGHFSVP 168 (259)
Q Consensus 156 d~VIlAtG~~s~~ 168 (259)
|.||.|+|.+|..
T Consensus 157 ~~vI~AdG~~S~v 169 (388)
T PRK07494 157 RLVVGADGRNSPV 169 (388)
T ss_pred eEEEEecCCCchh
Confidence 9999999987643
No 141
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.41 E-value=9.7e-13 Score=107.49 Aligned_cols=153 Identities=10% Similarity=0.098 Sum_probs=87.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc-------CceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN 72 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~-------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
|+||+||||||+|+++|..|.+.|++|+|+|+.+.. +......++.. .+.++.-..- .........+...
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~ 79 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEEL-EKFVAEMQDIYVV 79 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHH-HhhcCCCcEEEEE
Confidence 589999999999999999999999999999986421 11111111100 0000100000 0000001111100
Q ss_pred cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (259)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (259)
... ......+.... .........+.++.+.|.+.+.+.+ ++ ++++++++++...+ +.+.+.+.++
T Consensus 80 ~~~-g~~~~~~~~~~-----~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~~----- 145 (374)
T PRK06617 80 DNK-ASEILDLRNDA-----DAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN-DYSIIKFDDK----- 145 (374)
T ss_pred ECC-CceEEEecCCC-----CCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC-CeEEEEEcCC-----
Confidence 000 00000011000 0001112456889999988887764 66 88899999998776 6677777542
Q ss_pred EEEeCEEEEccCCCCCCc
Q 024975 152 EETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 152 ~~~ad~VIlAtG~~s~~~ 169 (259)
.+++|.||.|+|.+|..+
T Consensus 146 ~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 146 QIKCNLLIICDGANSKVR 163 (374)
T ss_pred EEeeCEEEEeCCCCchhH
Confidence 699999999999877654
No 142
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.41 E-value=5.1e-12 Score=103.04 Aligned_cols=134 Identities=20% Similarity=0.216 Sum_probs=83.7
Q ss_pred eEEEECCChHHHHHHHHH--HHcCCcEEEEeeCCCcC--c--eeeeCCCCCCCCCCCCCCC-CCccccccccceeccccc
Q 024975 4 HVAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVG--G--SWIYTSETESDPLGVDPNR-YPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L--~~~g~~v~v~e~~~~~g--g--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 76 (259)
||+||||||+|+++|.+| .+.|.+|+|+|+.+..+ . +|... ...... ..+-...+.......+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~--------~~~~~~~~~~v~~~w~~~~v~~~~~ 72 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFW--------EKDLGPLDSLVSHRWSGWRVYFPDG 72 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccc--------cccccchHHHHheecCceEEEeCCC
Confidence 899999999999999999 66799999999987652 1 12111 000000 000001111111111111
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
..... ........+..|.+++.+.+. .+.. +.++++|++++..+ ..+.+.+.+|. .++++
T Consensus 73 ~~~~~------------~~~Y~~i~~~~f~~~l~~~~~-~~~~--~~~~~~V~~i~~~~-~~~~v~~~~g~----~i~a~ 132 (374)
T PF05834_consen 73 SRILI------------DYPYCMIDRADFYEFLLERAA-AGGV--IRLNARVTSIEETG-DGVLVVLADGR----TIRAR 132 (374)
T ss_pred ceEEc------------ccceEEEEHHHHHHHHHHHhh-hCCe--EEEccEEEEEEecC-ceEEEEECCCC----EEEee
Confidence 10000 011122466889999988887 4444 68889999999886 56778888765 89999
Q ss_pred EEEEccCCC
Q 024975 157 AVVVCNGHF 165 (259)
Q Consensus 157 ~VIlAtG~~ 165 (259)
.||.|+|..
T Consensus 133 ~VvDa~g~~ 141 (374)
T PF05834_consen 133 VVVDARGPS 141 (374)
T ss_pred EEEECCCcc
Confidence 999999953
No 143
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.40 E-value=6.6e-12 Score=104.84 Aligned_cols=161 Identities=21% Similarity=0.232 Sum_probs=90.4
Q ss_pred eEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeCCCCCCCCC-------CCCCCCC------------Cccc
Q 024975 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPL-------GVDPNRY------------PVHS 63 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~~~~~~~~~-------~~~~~~~------------~~~~ 63 (259)
||+|||+|.+|+++|+.++++| .+|+|+||.+..||............. +...... ....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999999887765443221110000 0000000 0000
Q ss_pred cccccceeccccccceec--CCCCCccC---CC-CCCCCCC-----CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEE
Q 024975 64 SLYKSLRVNLPRELMGFQ--AYPFVARN---YE-GSVDLRR-----YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR 132 (259)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~-~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~ 132 (259)
.....+....+. ...|. ...+.... .. ....... ......+...|.+.+.+.+++ ++++++|+++.
T Consensus 81 ~l~~~~~~~~~~-~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESAD-AVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHH-HHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeE
Confidence 000000111100 00000 11110000 00 0000001 123357888888888899999 99999999999
Q ss_pred EeCC-CcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 133 LVES-NKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 133 ~~~~-~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
.+++ ..+.+...+.++....+.++.||+|||.++.
T Consensus 158 ~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 8643 3444555543444446789999999998765
No 144
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.39 E-value=2.6e-12 Score=107.93 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=117.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (259)
..+++|||-|++|..+...+.+. -.++++|-..+++. ++. .+......
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n----Y~R----------------------i~Ls~vl~--- 53 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN----YNR----------------------ILLSSVLA--- 53 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc----ccc----------------------eeeccccC---
Confidence 46899999999999999999984 35899987765431 100 00000000
Q ss_pred eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V 158 (259)
-+. ..+++.-.-.++..+.++. ++.+.+|+.+.+.. -.|.++.|. .+.+|.+
T Consensus 54 ----~~~---------------~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~~---k~V~t~~g~----~~~YDkL 105 (793)
T COG1251 54 ----GEK---------------TAEDISLNRNDWYEENGIT--LYTGEKVIQIDRAN---KVVTTDAGR----TVSYDKL 105 (793)
T ss_pred ----CCc---------------cHHHHhccchhhHHHcCcE--EEcCCeeEEeccCc---ceEEccCCc----Eeeccee
Confidence 000 0144444445666788998 99999999998754 567777765 8999999
Q ss_pred EEccCCCCCCccCCCCCCCCCCCceEEcccCCC---CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI---PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
|+||| |.|.++++||...+.-..+-...... ......++-+|||+|+-|+|+|..|...|-+++|++=.+
T Consensus 106 ilATG--S~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~ 178 (793)
T COG1251 106 IIATG--SYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP 178 (793)
T ss_pred EEecC--ccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence 99999 89999999998864222221111000 001123557999999999999999999999999888877
No 145
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.39 E-value=1.9e-12 Score=112.61 Aligned_cols=157 Identities=27% Similarity=0.352 Sum_probs=105.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+||+||+||-.|.+.|+.|+|+||.+++||...+. ..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------ip-------------------------- 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------IP-------------------------- 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------CC--------------------------
Confidence 3689999999999999999999999999999999999998873 10
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+.. . ..+.+.-.+++.+.|++ +..++++-+-. ..+. -.-..|.||+|
T Consensus 1830 nmkl--d--------------k~vv~rrv~ll~~egi~--f~tn~eigk~v---------s~d~-----l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1830 NMKL--D--------------KFVVQRRVDLLEQEGIR--FVTNTEIGKHV---------SLDE-----LKKENDAIVLA 1877 (2142)
T ss_pred ccch--h--------------HHHHHHHHHHHHhhCce--EEeeccccccc---------cHHH-----HhhccCeEEEE
Confidence 1110 0 34455556666777988 77776654321 1111 12457999999
Q ss_pred cCCCCCCccCCCCCCCC----CCC--------ceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEE
Q 024975 162 NGHFSVPRLAQVPGIDS----WPG--------KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (259)
Q Consensus 162 tG~~s~~~~~~~~g~~~----~~~--------~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~ 226 (259)
+|+ ..|+-.++||-+. |+- ....+...-.....++++|+|||||.+|-|....-.++|. .|.-+
T Consensus 1878 ~gs-t~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ 1954 (2142)
T KOG0399|consen 1878 TGS-TTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNF 1954 (2142)
T ss_pred eCC-CCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecce
Confidence 997 5677777777653 100 0111111011123468999999999999998887777764 44444
No 146
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.39 E-value=8.5e-12 Score=105.56 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=88.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCC-CC-----------cc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNR-YP-----------VH 62 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~-------~~~~~~~-~~-----------~~ 62 (259)
.+||||||+|.+|+++|+.+++.|.+|+|+||.+..||............ .+..... .+ ..
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 47999999999999999999999999999999988876543221111000 0000000 00 00
Q ss_pred ccccccceecccccccee-c--CCCCCccCC-CCCCCCC-CCC-----CHHHHHHHHHHHHHHhCCceeEEeceeEEEEE
Q 024975 63 SSLYKSLRVNLPRELMGF-Q--AYPFVARNY-EGSVDLR-RYP-----GHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR 132 (259)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~ 132 (259)
......+..+... ...| . ..++..... ....... .+| ....+...|.+.+.+.+++ ++++++|+++.
T Consensus 141 ~~l~~~~~~~s~~-~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~ 217 (506)
T PRK06481 141 KALLRYFVDNSAS-AIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIP--LFVNADVTKIT 217 (506)
T ss_pred HHHHHHHHhccHH-HHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCe--EEeCCeeEEEE
Confidence 0000000000000 0000 0 000100000 0000000 111 1245677777888888999 99999999998
Q ss_pred EeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 133 LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 133 ~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
..++....+.....++....+.++.||+|||.++.
T Consensus 218 ~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 218 EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred ecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 65423334555443334457899999999997654
No 147
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.38 E-value=8.1e-12 Score=105.71 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+...+...+.+.|.+ +..+++|+++...+ +.|.|.+.++.++...+.++.||.|+|.|+..
T Consensus 155 ~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 155 ARLVVLNALDAAERGAT--ILTRTRCVSARREG-GLWRVETRDADGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred HHHHHHHHHHHHHCCCE--EecCcEEEEEEEcC-CEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence 56666777777888999 99999999998875 67888877755555679999999999987643
No 148
>PLN02661 Putative thiazole synthesis
Probab=99.37 E-value=1.3e-11 Score=97.50 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=79.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
.+||+|||||++|+++|+.|.+. |.+|+|+|++..+||....... ..............+..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~--------l~~~~vv~~~a~e~LeE--------- 154 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQ--------LFSAMVVRKPAHLFLDE--------- 154 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcc--------cccccccccHHHHHHHH---------
Confidence 47999999999999999999986 8999999999888764432110 00000000000000000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCceeEEeceeEEEEEEeCCCcEEEEE------EecCC----c
Q 024975 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-EFGVDQVVRLHTEVLNARLVESNKWKVKS------RKKDD----V 149 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~v~~------~~g~~----~ 149 (259)
...+++.. .....-.+...+...|.+.+. +.+++ ++.++.++++..+++....+.+ .++.. .
T Consensus 155 lGV~fd~~-----dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~d 227 (357)
T PLN02661 155 LGVPYDEQ-----ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMD 227 (357)
T ss_pred cCCCcccC-----CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccc
Confidence 01122110 000000122445555555443 45788 9999999999876543333332 12111 2
Q ss_pred eEEEEeCEEEEccCCC
Q 024975 150 VEEETFDAVVVCNGHF 165 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~ 165 (259)
...+.+++||+|||+.
T Consensus 228 p~~I~AkaVVlATGh~ 243 (357)
T PLN02661 228 PNVMEAKVVVSSCGHD 243 (357)
T ss_pred eeEEECCEEEEcCCCC
Confidence 2468999999999964
No 149
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.37 E-value=1.2e-11 Score=100.29 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
.++...+.+.+++.|.+ ++++++|+++++.+++.+.+.+.+|+ ..++|++||.|.|.++.+
T Consensus 153 ~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~---~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGE---ETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCc---EEEEeeEEEECCchhHHH
Confidence 56777888888888999 99999999999987446777777765 229999999999986644
No 150
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.37 E-value=4.7e-12 Score=104.42 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 101 GHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 101 ~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
.+..+.+.|.+.+.+. +++ ++++++|+++...+ +.|.+.+.++. .+.+|.||.|+|.+|.
T Consensus 110 ~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 110 ELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ-GSVRVTLDDGE----TLTGRLLVAADGSHSA 170 (395)
T ss_pred EhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC-CeEEEEECCCC----EEEeCEEEEecCCChh
Confidence 3466777777766553 677 88999999998765 67888877654 6899999999997664
No 151
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.37 E-value=5.8e-12 Score=103.41 Aligned_cols=156 Identities=20% Similarity=0.213 Sum_probs=83.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc------CceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN 72 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
|++||+||||||+|+++|..|.+.|++|+|+|+.+.. +... ..++.. ...++....... .......+...
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~-l~~~~~~~L~~lGl~~~l~~-~~~~~~~~~~~ 78 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV-LEQGTVDLLREAGVDERMDR-EGLVHEGTEIA 78 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee-ECHHHHHHHHHCCChHHHHh-cCceecceEEe
Confidence 6789999999999999999999999999999998742 1111 111000 000010000000 00000000000
Q ss_pred cccccceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEE-ecCCce
Q 024975 73 LPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVV 150 (259)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~ 150 (259)
... .....++... ...... ...+..+...|.+.+.+.++. ++++.+++.+...++....|.+. +| ..
T Consensus 79 ~~~---~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~V~~~~~g--~~ 147 (390)
T TIGR02360 79 FDG---QRFRIDLKAL----TGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGDRPYVTFERDG--ER 147 (390)
T ss_pred eCC---EEEEEecccc----CCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCCccEEEEEECC--eE
Confidence 000 0000111100 000000 112345666666666667777 88888888776533345667665 33 22
Q ss_pred EEEEeCEEEEccCCCCCCc
Q 024975 151 EEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~~~ 169 (259)
..+++|.||.|.|.+|..+
T Consensus 148 ~~i~adlvIGADG~~S~VR 166 (390)
T TIGR02360 148 HRLDCDFIAGCDGFHGVSR 166 (390)
T ss_pred EEEEeCEEEECCCCchhhH
Confidence 4689999999999887654
No 152
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.37 E-value=1.6e-11 Score=103.82 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+...+...+.+.|++ +..+++|+++..++ +.|.+.+.+. +++...+.++.||+|+|.|+..
T Consensus 155 ~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 155 ARLVVLNARDAAERGAE--ILTRTRVVSARREN-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 45556666677788998 99999999998765 6688877652 2334579999999999987743
No 153
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.37 E-value=8.7e-12 Score=102.62 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
...+.+.|.+.+.+.|++ ++++++|++++..+ +.|.|.+.++ .+.+|.||+|+|.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGE--IRLGAEVTALDEHA-NGVVVRTTQG-----EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecC-CeEEEEECCC-----EEEeCEEEECCCcch
Confidence 367888888888888998 99999999998765 5677766542 689999999999876
No 154
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.36 E-value=3.4e-12 Score=106.31 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHHhC---CceeEEeceeEEEEEEe------CCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975 101 GHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLV------ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 101 ~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~------~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~ 169 (259)
++..+.+.|.+.+.+.+ ++ ++++++|++++.. ++..++|.+.++. ++++|+||.|.|..|..+
T Consensus 115 ~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~----~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 115 ENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYPNDNSNWVHITLSDGQ----VLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccccCCCCceEEEEcCCC----EEEeeEEEEecCCCChhH
Confidence 45778888888777664 77 9999999999753 1245777777654 899999999999877654
No 155
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.35 E-value=4.2e-12 Score=104.93 Aligned_cols=156 Identities=15% Similarity=0.078 Sum_probs=83.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCc--Cce-----eeeCCCCC--CCCCCCCCCCCCcccccccccee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV--GGS-----WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV 71 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~--gg~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 71 (259)
.+||+||||||+|+++|..|.+.|++|+|+|+. +.. +.. ....++.. ...++....-.......+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 369999999999999999999999999999996 211 100 00000000 00001000000000000001111
Q ss_pred ccccccceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 72 NLPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
..... .....++.... ...... ...+..+...|.+.+.+. +++ ++++++|++++..+ +.+.|.+.++.
T Consensus 84 ~~~~~-~~~~~~~~~~~----~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~~~v~~~~g~-- 153 (405)
T PRK08850 84 WEQDS-FARIEFDAESM----AQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE-SEAWLTLDNGQ-- 153 (405)
T ss_pred EeCCC-CceEEEecccc----CCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC-CeEEEEECCCC--
Confidence 00000 00000000000 000000 122355666676666554 677 89999999998776 66778887654
Q ss_pred eEEEEeCEEEEccCCCCCCc
Q 024975 150 VEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~ 169 (259)
.+++|.||.|+|..|..+
T Consensus 154 --~~~a~lvIgADG~~S~vR 171 (405)
T PRK08850 154 --ALTAKLVVGADGANSWLR 171 (405)
T ss_pred --EEEeCEEEEeCCCCChhH
Confidence 799999999999766543
No 156
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.34 E-value=4.6e-13 Score=110.90 Aligned_cols=147 Identities=23% Similarity=0.240 Sum_probs=35.7
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
||||||||++|++||..+++.|.+|+|+|+.+.+||........... ...... ......+..+...... ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~--~~~~~~-~~~~gi~~e~~~~~~~----~~~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFD--GNHDED-QVIGGIFREFLNRLRA----RGGY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EET--TEEHHH-HHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChh--hcchhh-ccCCCHHHHHHHHHhh----hccc
Confidence 89999999999999999999999999999999999876542100000 000000 0000011111111100 0000
Q ss_pred CCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 84 PFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+.... ..+.. .......+...+.+.+.+.|++ +++++.|+++..+++..+.|.+.+..+ ...+.|+.+|.||
T Consensus 74 ~~~~~----~~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaT 146 (428)
T PF12831_consen 74 PQEDR----YGWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc----cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc-ccccccccccccc
Confidence 00000 00110 1122255666777777778999 999999999998765556666665322 4689999999999
Q ss_pred CC
Q 024975 163 GH 164 (259)
Q Consensus 163 G~ 164 (259)
|-
T Consensus 147 G~ 148 (428)
T PF12831_consen 147 GD 148 (428)
T ss_dssp --
T ss_pred cc
Confidence 94
No 157
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.33 E-value=9.1e-12 Score=103.24 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=83.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCC---CCcccccccc--cee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNR---YPVHSSLYKS--LRV 71 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~--~~~ 71 (259)
.+|+|||||++||++|..|.++| ++|+|+|+.+.++ ......++.. ...++..... .......... +..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 6999999987653 2222221110 0001110000 0000000000 000
Q ss_pred ccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975 72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (259)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (259)
..... ..+...... .........+.++.+.|.+.+. +.. ++++++|++++..+ +.|++.+.++.
T Consensus 81 ~~~~~-~~~~~~~~~------~~~~~~~i~R~~l~~~L~~~~~--~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~---- 144 (414)
T TIGR03219 81 RNGSD-ASYLGATIA------PGVGQSSVHRADFLDALLKHLP--EGI--ASFGKRATQIEEQA-EEVQVLFTDGT---- 144 (414)
T ss_pred EecCc-cceeeeecc------ccCCcccCCHHHHHHHHHHhCC--Cce--EEcCCEEEEEEecC-CcEEEEEcCCC----
Confidence 00000 000000000 0011112456677777666542 234 78899999998866 67889887765
Q ss_pred EEEeCEEEEccCCCCCC
Q 024975 152 EETFDAVVVCNGHFSVP 168 (259)
Q Consensus 152 ~~~ad~VIlAtG~~s~~ 168 (259)
.+.+|.||.|+|.+|..
T Consensus 145 ~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 145 EYRCDLLIGADGIKSAL 161 (414)
T ss_pred EEEeeEEEECCCccHHH
Confidence 79999999999987753
No 158
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.33 E-value=7.3e-12 Score=102.59 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~ 171 (259)
..+...+.+.+.+.+++ ++.+++|+++...+ +.+.|.+.++ .+.+|.||+|+|.++....+
T Consensus 149 ~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 149 ELAIKAHLRLAREAGAE--LLFNEPVTAIEADG-DGVTVTTADG-----TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHCCCE--EECCCEEEEEEeeC-CeEEEEeCCC-----EEEeeEEEEecCcchhhhcc
Confidence 56666677777778998 89999999999865 5677776653 58999999999987654433
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.33 E-value=5.5e-11 Score=74.73 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=67.4
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
+++|||||+.|+-+|..|.+.|.+|+++++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--------------------------------------------- 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--------------------------------------------- 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------------------
Confidence 58999999999999999999999999999987541
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (259)
+.+. .++..++.+.+++.|++ +++++.+.++..++++ +.|.+++|
T Consensus 36 -------------~~~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 36 -------------PGFD--PDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp -------------TTSS--HHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTS-EEEEEETS
T ss_pred -------------hhcC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCE-EEEEEecC
Confidence 0011 78888999999999999 9999999999998744 66877764
No 160
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.32 E-value=4.2e-13 Score=109.00 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+.+.+.+.+++.|++ ++.+++|+++..++ +.|. |.+.++ .+.+|.||+|+|.++..
T Consensus 147 ~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~v~gv~~~~g-----~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVE--IRTGTEVTSIDVDG-GRVTGVRTSDG-----EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHTT-E--EEESEEEEEEEEET-TEEEEEEETTE-----EEEECEEEE--GGGHHH
T ss_pred cchhhhhHHHHHHhhhh--ccccccccchhhcc-ccccccccccc-----ccccceeEeccccccee
Confidence 78889999999999999 99999999999987 6677 888774 49999999999986544
No 161
>PRK07121 hypothetical protein; Validated
Probab=99.31 E-value=3.7e-11 Score=101.60 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEe-CEEEEccCCCCC
Q 024975 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETF-DAVVVCNGHFSV 167 (259)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~a-d~VIlAtG~~s~ 167 (259)
...+...|.+.+++.+++ ++++++|+++..+++ ....|...+ +++...+.+ +.||+|||.++.
T Consensus 176 g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCc
Confidence 456778888888888998 999999999987643 344555544 233456889 999999997664
No 162
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.30 E-value=2.6e-11 Score=102.37 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=80.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCce-eeeCCCCCCCCCCCCCCCCCccccccccceecccc--cc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPR--EL 77 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (259)
.|||+|||||++|+.||..+++.|.+|+++|++. .+|+. |.... +.... ......+...... ..
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~Cnpsi-------GG~ak-----g~lvrEidalGg~~g~~ 71 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAI-------GGIAK-----GHLVREIDALGGEMGKA 71 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCcccc-------ccchh-----hHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999999999973 55531 11100 00000 0000000000000 00
Q ss_pred ceecCCCCCccCCCCC--CC-CCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975 78 MGFQAYPFVARNYEGS--VD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (259)
Q Consensus 78 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (259)
.+-....+......+. .+ ...-..+..+...+.+.+.+. +++ + ++.+|+++...++....|.+.+|. .+
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~grV~GV~t~dG~----~I 144 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLD--L-FQGEVEDLIVENGRVVGVVTQDGL----EF 144 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecCCEEEEEEECCCC----EE
Confidence 0000000000000000 00 011123466777777777655 666 4 577888887765344457776654 79
Q ss_pred EeCEEEEccCCCC
Q 024975 154 TFDAVVVCNGHFS 166 (259)
Q Consensus 154 ~ad~VIlAtG~~s 166 (259)
.|+.||+|||.+.
T Consensus 145 ~Ak~VIlATGTFL 157 (618)
T PRK05192 145 RAKAVVLTTGTFL 157 (618)
T ss_pred ECCEEEEeeCcch
Confidence 9999999999654
No 163
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.30 E-value=6.2e-11 Score=102.60 Aligned_cols=167 Identities=16% Similarity=0.068 Sum_probs=88.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCcc-ccccccceeccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLP 74 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 74 (259)
.+||+||||||+||++|..|++. |++|+|+|+.+.+. ......++.. ...++.... +.. ...........+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~--l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAER--ILKEAYWINETAFWKP 109 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHH--HHhhcccccceEEEcC
Confidence 46999999999999999999995 99999999986431 1111111000 000111000 000 000000000000
Q ss_pred cc--cceecCCC-CCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC--CcEEEEEEec---
Q 024975 75 RE--LMGFQAYP-FVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKK--- 146 (259)
Q Consensus 75 ~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g--- 146 (259)
.. ...+.... ................++..+.+.|.+.+.+.+..-.+.+++++++++..++ ..+++++++.
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 00 00000000 0000000000111223456677888888877654212788999999987642 3477777653
Q ss_pred -CCceEEEEeCEEEEccCCCCCCcc
Q 024975 147 -DDVVEEETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 147 -~~~~~~~~ad~VIlAtG~~s~~~~ 170 (259)
++..+++++|+||.|.|..|..+.
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~ 214 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHH
Confidence 243468999999999998776553
No 164
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.29 E-value=7.7e-11 Score=97.66 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC-ceEEEEeCEEEEccCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~-~~~~~~ad~VIlAtG~~s~ 167 (259)
..+...+.+.+++.|++ ++.+++|++++..+ +.|.+.+.++.+ +...+++|+||+|+|.++.
T Consensus 197 ~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGVQ--FRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 46677777888888998 99999999998765 567766554321 0136899999999998764
No 165
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=5.8e-11 Score=101.68 Aligned_cols=163 Identities=18% Similarity=0.081 Sum_probs=89.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC----CCCCCC------------CCccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL----GVDPNR------------YPVHSSL 65 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~----~~~~~~------------~~~~~~~ 65 (259)
.+||+|||+|.+|++||..+.+.|.+|+|+||.+..++............. +..... .......
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 479999999999999999999999999999998765544322211111000 000000 0000001
Q ss_pred cccceeccccccceec--CCCCCccCC----CCCCCCCCC--------CCHHHHHHHHHHHHHHhCCceeEEeceeEEEE
Q 024975 66 YKSLRVNLPRELMGFQ--AYPFVARNY----EGSVDLRRY--------PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA 131 (259)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i 131 (259)
...+....+.....+. ..+|..... ........+ .....+...|.+.+.+.+++ +..++.++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L 162 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence 1111111111000000 112211000 000000111 12356677777777777888 9999999999
Q ss_pred EEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCC
Q 024975 132 RLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 132 ~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s 166 (259)
..+++....+...+. ++....+.++.||+|||.++
T Consensus 163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 986534444655543 34456789999999999765
No 166
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=3.6e-11 Score=104.01 Aligned_cols=38 Identities=37% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg 39 (259)
.+||+|||+|.+|++||..+++.|.+|+|+||....++
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 47999999999999999999999999999999876544
No 167
>PRK06996 hypothetical protein; Provisional
Probab=99.29 E-value=2.1e-11 Score=100.54 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC----CcEEEEeeCCCcCc-----eeeeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGG-----SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g----~~v~v~e~~~~~gg-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
.+||+||||||+|+++|..|++.| ++|+|+|+.+.... .....+... ...++.-.. ....+..+.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~----~~~~~~~~~ 86 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA----DATPIEHIH 86 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh----cCCcccEEE
Confidence 579999999999999999999987 47999999753210 000000000 000010000 000000000
Q ss_pred eccccccceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 71 VNLPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
...... .+...+..... ...... ..++..+.+.|.+.+.+.+++ +.+++++++++..+ +.+++.+.++++.
T Consensus 87 ~~~~~~-~g~~~~~~~~~----~~~~~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~-~~v~v~~~~~~g~ 158 (398)
T PRK06996 87 VSQRGH-FGRTLIDRDDH----DVPALGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDA-DGVTLALGTPQGA 158 (398)
T ss_pred EecCCC-CceEEeccccc----CCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecC-CeEEEEECCCCcc
Confidence 000000 00000000000 001111 235578889999998888888 99999999998765 6788887754332
Q ss_pred eEEEEeCEEEEccCC
Q 024975 150 VEEETFDAVVVCNGH 164 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~ 164 (259)
..+++|+||.|+|.
T Consensus 159 -~~i~a~lvIgADG~ 172 (398)
T PRK06996 159 -RTLRARIAVQAEGG 172 (398)
T ss_pred -eEEeeeEEEECCCC
Confidence 47999999999995
No 168
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.29 E-value=1.2e-11 Score=102.68 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
....+...+.+.+++.+++ ++++++++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~--i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVD--IRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCee--eeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3467888889999999998 999999999999865455577763 3466678999999999997664
No 169
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=3.3e-11 Score=102.95 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=86.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC-cCceeeeCCCCCCCCCCCCCCC------------CCcccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKS 68 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~-~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 68 (259)
.+||+|||+|.+|++||..+ +.|.+|+|+||.+. .||................... ..........
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 47999999999999999999 99999999999764 3433222111000000000000 0000011111
Q ss_pred ceeccccccceec--CCCCCccCC----CCCCCCCCCC--------CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975 69 LRVNLPRELMGFQ--AYPFVARNY----EGSVDLRRYP--------GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (259)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (259)
+....+.....+. ..++..... ........++ ....+...|.+.+.+.+++ +++++.++++..+
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~ 163 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVD 163 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEe
Confidence 1111111100000 111111000 0000001111 2356777787777778898 9999999999876
Q ss_pred CCC-cEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975 135 ESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 135 ~~~-~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s 166 (259)
+++ ...+...+ .++....+.++.||+|||.++
T Consensus 164 ~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 164 ENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 533 34444433 344456789999999999765
No 170
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.28 E-value=5.4e-11 Score=104.02 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+...+.+.+.+ +++ ++++++|+++...+ +.|.|.+.++. .+.+|.||+|+|.++..
T Consensus 408 ~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 408 AELCRALLALAGQ-QLT--IHFGHEVARLERED-DGWQLDFAGGT----LASAPVVVLANGHDAAR 465 (662)
T ss_pred HHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC-CEEEEEECCCc----EEECCEEEECCCCCccc
Confidence 6777778777777 888 89999999998876 67888776543 57899999999987643
No 171
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.28 E-value=4.7e-11 Score=103.03 Aligned_cols=165 Identities=13% Similarity=0.138 Sum_probs=90.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCCC------------CCccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPNR------------YPVHSSLYK 67 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~ 67 (259)
.+||+|||+|.+|++||..+++.|.+|+|+||....++............... .... .........
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 46999999999999999999999999999999876665433221111100000 0000 000000111
Q ss_pred cceeccccccceec--CCCCCccCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCceeEEec
Q 024975 68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLH 125 (259)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~-----------~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~ 125 (259)
.+....+.....+. ..+|..... ...... ..+ .....+...|.+.+.+.+++ +..+
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~ 186 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN--FFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE--EEec
Confidence 11111111110011 111111000 000000 000 12457788888888888998 9999
Q ss_pred eeEEEEEE-eCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975 126 TEVLNARL-VESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 126 ~~v~~i~~-~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
+.++++.. .++....+...+ .++....+.++.||+|||.+...
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 99999887 332333354422 34556788999999999986543
No 172
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.27 E-value=6.8e-11 Score=100.78 Aligned_cols=164 Identities=22% Similarity=0.160 Sum_probs=88.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL 69 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 69 (259)
.+||+|||+|.+|++||..+++.|.+|+|+||....+|.............+.... ...........+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 47999999999999999999999999999999887654333221111000000000 000000011111
Q ss_pred eeccccccceec--CCCCCccCC------CCCC---CCCCC----CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975 70 RVNLPRELMGFQ--AYPFVARNY------EGSV---DLRRY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (259)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~~------~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (259)
....+.....+. ..++..... .... ....+ .....+...|.+.+.+.+++ ++.++.|+++...
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~ 173 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEc
Confidence 111111000000 111111000 0000 00011 13467888888888888888 9999999999876
Q ss_pred CC-CcEEEEEEe----cCCceEEEEeCEEEEccCCCCC
Q 024975 135 ES-NKWKVKSRK----KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 135 ~~-~~~~v~~~~----g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
++ ....+...+ .++....+.++.||+|||.++.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 42 333344431 1122357899999999998664
No 173
>PLN02985 squalene monooxygenase
Probab=99.27 E-value=1.2e-10 Score=98.39 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce-ee--eCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS-WI--YTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~-~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
++||+|||||++|+++|..|++.|.+|+|+|+....... +. ..++.. ...++...............+.......
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 589999999999999999999999999999997432110 10 000000 0000110000000000011111100000
Q ss_pred cceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975 77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (259)
.. ...++.... ...... ....++.++.+.|.+.+.+. +++ +.. .+++++..+++....|.+...+++...+.
T Consensus 123 ~~-~~~~~~~~~--~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~--i~~-gtvv~li~~~~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 123 EA-VAPFPVDNN--NFPYEPSARSFHNGRFVQRLRQKASSLPNVR--LEE-GTVKSLIEEKGVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred EE-EEeCCCCCc--CCCcccceeeeecHHHHHHHHHHHHhCCCeE--EEe-eeEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence 00 011111000 000000 11234578888888888765 566 554 46777765542223455544344445678
Q ss_pred eCEEEEccCCCCCCc
Q 024975 155 FDAVVVCNGHFSVPR 169 (259)
Q Consensus 155 ad~VIlAtG~~s~~~ 169 (259)
+|.||.|+|.+|..+
T Consensus 197 AdLVVgADG~~S~vR 211 (514)
T PLN02985 197 APLTVVCDGCYSNLR 211 (514)
T ss_pred CCEEEECCCCchHHH
Confidence 999999999877644
No 174
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.27 E-value=9.3e-11 Score=98.96 Aligned_cols=162 Identities=20% Similarity=0.156 Sum_probs=86.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL 69 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 69 (259)
.+||+|||+|.+|++||..+.+.|. |+|+||.+..+|.................. ...........+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 999999876655433221111000000000 000000011111
Q ss_pred eeccccccceec--CCCCCccCC------CCC--CCCCCC----CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEe
Q 024975 70 RVNLPRELMGFQ--AYPFVARNY------EGS--VDLRRY----PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV 134 (259)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~~------~~~--~~~~~~----~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~ 134 (259)
....+.....+. ..++..... ... .....+ .....+...|.+.+.+ .+++ ++.++.|+++..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence 111110000000 111111000 000 000111 1235777888888876 5888 9999999999875
Q ss_pred CCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 135 ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 135 ~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
++....+...+. +....+.++.||+|||.++.
T Consensus 159 ~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 TGRVVGVWVWNR-ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CCEEEEEEEEEC-CcEEEEEcCEEEECCCcccC
Confidence 423333555543 33357899999999998764
No 175
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.26 E-value=4.6e-11 Score=99.16 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=81.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-----------CCccccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-----------YPVHSSLYKSLR 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 70 (259)
.+||+|||+|.+|++||..+. .|.+|+|+||.+..++................... ..........+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~ 82 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA 82 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 479999999999999999984 79999999999877654322211110000000000 000000011111
Q ss_pred eccccccceecC--CCCCccC----C-CCCCC--CC-CC---CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCC
Q 024975 71 VNLPRELMGFQA--YPFVARN----Y-EGSVD--LR-RY---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVES 136 (259)
Q Consensus 71 ~~~~~~~~~~~~--~~~~~~~----~-~~~~~--~~-~~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~ 136 (259)
..++.....+.+ .++.... . ..... .+ .+ .....+...|.+.+.+ .+++ +++++++++|..+++
T Consensus 83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~--i~~~t~v~~Li~~~~ 160 (433)
T PRK06175 83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNIT--IIENCYLVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCE--EEECcEeeeeEecCC
Confidence 111100000000 1111000 0 00000 00 01 1234566666666654 5898 999999999986553
Q ss_pred CcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 137 ~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
..+.+.... ++....+.++.||+|||.++
T Consensus 161 ~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 161 TCIGAICLK-DNKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEEE-CCcEEEEEcCeEEEccCccc
Confidence 334443332 22334689999999999754
No 176
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.26 E-value=5.5e-11 Score=99.72 Aligned_cols=155 Identities=19% Similarity=0.253 Sum_probs=81.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKSL 69 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 69 (259)
|+||+|||+|++|++||..+++.|.+|+|+||....+.++... ............. ..........+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~-ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 79 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQ-AGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNV 79 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHc-CCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5899999999999999999999999999999985432221111 0000000000000 00000001111
Q ss_pred eeccccccceec--CCCCCccCCCCCCCCCCCC--------CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE
Q 024975 70 RVNLPRELMGFQ--AYPFVARNYEGSVDLRRYP--------GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139 (259)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~ 139 (259)
..+.+.....+. ..++.... ......|+ ....+.+.|.+.+.+.+++ +... .++.+...++...
T Consensus 80 ~~~~~~~i~~L~~~Gv~f~~~~---~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~g~v~ 153 (466)
T PRK08401 80 ISKSSEAYDFLTSLGLEFEGNE---LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVN--FIRG-FAEELAIKNGKAY 153 (466)
T ss_pred HHHHHHHHHHHHHcCCCcccCC---CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeCCEEE
Confidence 111111000000 11111100 00011111 2356788888888888888 7655 7888876542223
Q ss_pred EEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 140 ~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
.+.. ++ ..+.++.||+|||.++..
T Consensus 154 Gv~~-~g----~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 154 GVFL-DG----ELLKFDATVIATGGFSGL 177 (466)
T ss_pred EEEE-CC----EEEEeCeEEECCCcCcCC
Confidence 3444 22 368999999999987653
No 177
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.26 E-value=7.9e-11 Score=101.29 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=84.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCC---CCCCCCC------------CCcccccccc
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP---LGVDPNR------------YPVHSSLYKS 68 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~---~~~~~~~------------~~~~~~~~~~ 68 (259)
||+|||+|++|++||..+++.|.+|+|+||.+..++............ ....... ..........
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 799999999999999999999999999999876554322211110000 0000000 0000000001
Q ss_pred ceeccccccceec--CCCCCccCC------CCC---CCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975 69 LRVNLPRELMGFQ--AYPFVARNY------EGS---VDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (259)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~------~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (259)
+..+.+.....+. ..++..... ... .....| .....+...|.+.+.+.+++ +++++.++++...
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~ 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVS--FFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEe
Confidence 1111110000000 011110000 000 000011 12346677777777777998 9999999999876
Q ss_pred CCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 135 ESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 135 ~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
++....+...+ .++....+.++.||+|||.++.
T Consensus 159 ~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 159 DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred CCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 53323344332 2344457899999999997653
No 178
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.26 E-value=3.7e-11 Score=98.57 Aligned_cols=57 Identities=32% Similarity=0.358 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
..+.+.+.+.+++.+++ ++.+++|+++...+ +.+.|.+.++ .+.+|.||+|+|.++.
T Consensus 145 ~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~-~~~~v~~~~~-----~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 145 EKALRALQELAEAHGAT--VRDGTKVVEIEPTE-LLVTVKTTKG-----SYQANKLVVTAGAWTS 201 (380)
T ss_pred HHHHHHHHHHHHHcCCE--EECCCeEEEEEecC-CeEEEEeCCC-----EEEeCEEEEecCcchH
Confidence 57778888888888998 99999999998765 6677766542 5899999999998654
No 179
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.25 E-value=1.1e-10 Score=99.69 Aligned_cols=63 Identities=17% Similarity=0.039 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~ 167 (259)
..+...+...+.+.|++ +..+++|+++...+++.+.|.+.+.. ++...+.++.||+|+|.|+.
T Consensus 149 ~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQ--ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HHHHHHHHHHHHhCCCE--EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 55666667777788999 99999999998875344456664422 33357999999999998764
No 180
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=6e-11 Score=102.69 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975 107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 107 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
+.|.+.+.+.+++ +++++.++++..+++....|...+. ++....+.++.||+|||+++..
T Consensus 174 ~~L~~~~~~~gV~--i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVK--MYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCE--EEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 4455566677898 9999999999876533444555542 3445678999999999986643
No 181
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.24 E-value=1.5e-10 Score=100.00 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=89.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCC------------CCCccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPN------------RYPVHSSLYK 67 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~ 67 (259)
.+||+|||+|.+|++||..+++.|.+|+|+||....++............... ... ..........
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 36999999999999999999999999999999876554332221111000000 000 0000011111
Q ss_pred cceeccccccceec--CCCCCccCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCceeEEec
Q 024975 68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLH 125 (259)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~-----------~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~ 125 (259)
.+..+.+.....+. ..+|..... ...... ..+ ..+..+...|.+.+.+.+++ +..+
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~ 207 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVE 207 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEe
Confidence 11111111111111 112211000 000000 001 13456777787777777888 9999
Q ss_pred eeEEEEEEeC-CCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975 126 TEVLNARLVE-SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 126 ~~v~~i~~~~-~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
+.++++..++ +....+...+ .++....+.++.||+|||.++..
T Consensus 208 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 208 YFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred eEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 9999987653 2334454433 23556678999999999986643
No 182
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=8.1e-11 Score=101.38 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=89.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCCC------------CCccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPNR------------YPVHSSLYK 67 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~ 67 (259)
.+||+|||+|.+|++||..+++.|.+|+|+||....++............... .... .........
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 91 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE 91 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 37999999999999999999999999999999876554432221111100000 0000 000000011
Q ss_pred cceeccccccceec--CCCCCccCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCceeEEec
Q 024975 68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLH 125 (259)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~-----------~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~ 125 (259)
.+..+++.....+. ..++..... ...... ..+ .....+...|.+.+.+.+++ +..+
T Consensus 92 ~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~--i~~~ 169 (598)
T PRK09078 92 YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAE--FFIE 169 (598)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCE--EEEe
Confidence 11111111000000 111110000 000000 001 12356777888878778898 9999
Q ss_pred eeEEEEEEeCC-CcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975 126 TEVLNARLVES-NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 126 ~~v~~i~~~~~-~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
+.+++|..+++ ....+...+ .++....+.++.||+|||.+...
T Consensus 170 ~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 170 YFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 99999987642 344455432 23555678999999999986643
No 183
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.24 E-value=7.1e-11 Score=90.75 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC--CcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ 172 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~ 172 (259)
.+-.+.++..+.+.|+. ++.+..|..+...+. ....|.+.+++ .+.++.+|+|+|+|....+|.
T Consensus 153 ~kslk~~~~~~~~~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs----~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGS----IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeE--EecCcceeeEeeccCCCceeEEEeccCC----eeecceEEEEecHHHHhhcCc
Confidence 67788999999999999 999999999886432 45677787776 799999999999988777764
No 184
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=1.2e-10 Score=100.01 Aligned_cols=164 Identities=14% Similarity=0.080 Sum_probs=89.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCC------------CCCccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPN------------RYPVHSSLYK 67 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~ 67 (259)
.+||+|||+|.+||+||..+++.|.+|+|+||....+|.............+. ... ..........
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 36999999999999999999999999999999866654432221111000000 000 0000011111
Q ss_pred cceeccccccceec--CCCCCccCC------CCCCCCCC-----C--------CCHHHHHHHHHHHHHHhCCceeEEece
Q 024975 68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDLRR-----Y--------PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (259)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~-----~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (259)
.+..+.+.....+. ..+|..... ........ + .....+...|.+.+.+.+++ ++.++
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~--i~~~~ 164 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCE--EEeCc
Confidence 11111111111111 122211000 00000000 1 12456777777777777888 99999
Q ss_pred eEEEEEEe-CCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 127 EVLNARLV-ESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 127 ~v~~i~~~-~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
.++++..+ ++....+...+ .++....+.++.||+|||.++.
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 99999875 32344454432 2355567899999999998654
No 185
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2.2e-10 Score=98.54 Aligned_cols=165 Identities=13% Similarity=0.060 Sum_probs=88.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC----CCCC----------CCccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV----DPNR----------YPVHSSLYK 67 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~ 67 (259)
.+||+|||+|.+||+||..+++.|.+|+|+||....++............... .+.. .+.......
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 47999999999999999999999999999999865554433221111100000 0000 000000111
Q ss_pred cceeccccccceec--CCCCCccCC------CCCCCCC-----C-----C---CCHHHHHHHHHHHHHHhCCceeEEece
Q 024975 68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDLR-----R-----Y---PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (259)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~-----~-----~---~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (259)
.+....+.....+. ..++..... ....... . + .....+...|.+.+.+.+++ +..++
T Consensus 92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~--i~~~~ 169 (591)
T PRK07057 92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQ--FFVEW 169 (591)
T ss_pred HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCE--EEeCc
Confidence 11111111000000 111110000 0000000 0 1 12356777777777778998 99999
Q ss_pred eEEEEEEeCC-CcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975 127 EVLNARLVES-NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 127 ~v~~i~~~~~-~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
.++++..+++ ....+...+ .++....+.++.||+|||.++..
T Consensus 170 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 170 MALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 9999987532 344455533 23445678899999999986543
No 186
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.22 E-value=2.7e-10 Score=98.30 Aligned_cols=162 Identities=13% Similarity=0.053 Sum_probs=83.9
Q ss_pred CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCC--CCCCCCCCCCCC------------CCcccccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSE--TESDPLGVDPNR------------YPVHSSLY 66 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~--~~~~~~~~~~~~------------~~~~~~~~ 66 (259)
+||+|||+|.+|++||..+++. |.+|+|+||....++.. .... ............ ........
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 6999999999999999999998 99999999987543322 1110 000000000000 00000000
Q ss_pred ccceeccccccceec--CCCCCccCC---CCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEE
Q 024975 67 KSLRVNLPRELMGFQ--AYPFVARNY---EGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWK 140 (259)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~ 140 (259)
..+....+.....+. ..++..... ..............+...|.+.+.+.+ ++ ++.++.|+++..+++..+.
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~g~v~G 168 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDDNRIAG 168 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeCCEEEE
Confidence 000000010000000 111111000 000000111234567777777776665 88 9999999999865533333
Q ss_pred EEE-EecCCceEEEEeCEEEEccCCCCC
Q 024975 141 VKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 141 v~~-~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
+.. ...++....+.++.||+|||.++.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 432 222344457899999999997664
No 187
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.22 E-value=3.5e-10 Score=95.49 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=80.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccc--ccccee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP--RELMGF 80 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 80 (259)
|||+|||+|++|+.+|..+++.|.+|+|+|++....|.+.-++... + ... ......+..... ....+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~g----G-~a~-----g~l~rEidaLGG~~~~~~d~ 70 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIG----G-PAK-----GILVKEIDALGGLMGKAADK 70 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCcccccc----c-ccc-----chhhhhhhcccchHHHHHHh
Confidence 6999999999999999999999999999999744332221111000 0 000 000000000000 000000
Q ss_pred cCCCCCccCCCCC--CC-CCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEe-CCCcEEEEEEecCCceEEEEe
Q 024975 81 QAYPFVARNYEGS--VD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV-ESNKWKVKSRKKDDVVEEETF 155 (259)
Q Consensus 81 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~~~a 155 (259)
....+......+. .+ ...-..+..+...+++.+.+. ++. + +..+|+++... ++..+.|.+.++. .+.|
T Consensus 71 ~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--I-le~~Vv~li~e~~g~V~GV~t~~G~----~I~A 143 (617)
T TIGR00136 71 AGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--L-FQGEVEDLILEDNDEIKGVVTQDGL----KFRA 143 (617)
T ss_pred hceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEEecCCcEEEEEECCCC----EEEC
Confidence 0000000000000 00 011224467778888888776 554 4 56688888665 3345667777654 7999
Q ss_pred CEEEEccCCCC
Q 024975 156 DAVVVCNGHFS 166 (259)
Q Consensus 156 d~VIlAtG~~s 166 (259)
+.||+|||.+.
T Consensus 144 d~VILATGtfL 154 (617)
T TIGR00136 144 KAVIITTGTFL 154 (617)
T ss_pred CEEEEccCccc
Confidence 99999999874
No 188
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.9e-10 Score=98.86 Aligned_cols=164 Identities=21% Similarity=0.225 Sum_probs=86.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCC-CCCCC--C------------CCcccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPL-GVDPN--R------------YPVHSS 64 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~-~~~~~--~------------~~~~~~ 64 (259)
.+||+|||+|.+|++||..+++.| .+|+|+||....++............. ...+. . ......
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 479999999999999999999874 899999998765543322211110000 00000 0 000000
Q ss_pred ccccceeccccccceec--CCCCCccCCC---------CCCCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEE
Q 024975 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE---------GSVDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLN 130 (259)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~ 130 (259)
....+..+.+.....+. ..+|...... .......| .....+...|.+.+.+.+++ +..++.|++
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~--i~~~t~v~~ 160 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVT--IYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCE--EEeCcEEEE
Confidence 11111111111111111 1111110000 00000111 13356778888877778898 999999999
Q ss_pred EEEeCCCcEEEEE-EecCCceEEEEeCEEEEccCCCCC
Q 024975 131 ARLVESNKWKVKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 131 i~~~~~~~~~v~~-~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
+..+++....+.. ...++....+.++.||+|||.++.
T Consensus 161 L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 161 LILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 9875432222332 222334456899999999998654
No 189
>PRK08275 putative oxidoreductase; Provisional
Probab=99.20 E-value=2.4e-10 Score=97.91 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
.+..+.+.|.+.+.+.+++ +..++.|+++..++++ ...+...+ .++....+.++.||+|||..+.
T Consensus 135 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 135 EGHDIKKVLYRQLKRARVL--ITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred ChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 3457888888888888998 9999999999876223 33344322 2344456899999999997543
No 190
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.20 E-value=1.7e-10 Score=94.19 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
+||+|||||++|+++|++|+++|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999763
No 191
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.20 E-value=1.5e-10 Score=97.97 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=85.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKSL 69 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 69 (259)
.+||+|||+|.+|++||..+.+ |.+|+|+||.+..+|................... ..........+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 4799999999999999999976 8999999998876655433221110000000000 00000011111
Q ss_pred eeccccccceec--CCCCCccC-----C-CCCC--CCC-CC----CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975 70 RVNLPRELMGFQ--AYPFVARN-----Y-EGSV--DLR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (259)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~-----~-~~~~--~~~-~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (259)
....+.....+. ..+|.... . .... ... .+ .....+...|.+.+. .+++ ++.++.++++..+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~--i~~~~~v~~Li~~ 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVT--VVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCE--EEECeEhhheeec
Confidence 111111100010 11111000 0 0000 000 01 122456666666654 5888 9999999999765
Q ss_pred CCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 135 ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 135 ~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
++....+...+.+++...+.++.||+|||.++.
T Consensus 159 ~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 NGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred CCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 433344555554555567899999999997653
No 192
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.20 E-value=6.9e-11 Score=99.16 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~ 169 (259)
.++...|.+.+.+.|++ ++.++.|++++. . +.+.|.+.++ .+.+|.||+|||.|+...
T Consensus 183 ~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~-~~~~v~t~~g-----~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 183 GLLVRGLRRVALELGVE--IHENTPMTGLEE-G-QPAVVRTPDG-----QVTADKVVLALNAWMASH 240 (460)
T ss_pred HHHHHHHHHHHHHcCCE--EECCCeEEEEee-C-CceEEEeCCc-----EEECCEEEEccccccccc
Confidence 67778888888889999 999999999975 2 5577776553 589999999999876543
No 193
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.20 E-value=6.2e-10 Score=92.34 Aligned_cols=164 Identities=22% Similarity=0.264 Sum_probs=96.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC---------------------------CCCCCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---------------------------SDPLGV 54 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~---------------------------~~~~~~ 54 (259)
.+||+|||||+.|+.+|..++.+|++|+|+|+++.-.|+...+.... ..++-.
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~v 91 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHLV 91 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcccc
Confidence 58999999999999999999999999999999987766654432111 111222
Q ss_pred CCCCCCccccc--------------ccccee---cc-ccccceec-CCCCCccCCCCCCC-CCCCC----CHHHHHHHHH
Q 024975 55 DPNRYPVHSSL--------------YKSLRV---NL-PRELMGFQ-AYPFVARNYEGSVD-LRRYP----GHEEVLRYLQ 110 (259)
Q Consensus 55 ~~~~~~~~~~~--------------~~~~~~---~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~ 110 (259)
.+....++... |..+.. .. ........ ..+..+........ ...|+ ....+.....
T Consensus 92 ~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~a 171 (532)
T COG0578 92 EPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAANA 171 (532)
T ss_pred ccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHHH
Confidence 22111111110 111110 00 00000000 00000000000000 11222 1144555566
Q ss_pred HHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCCC
Q 024975 111 NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 111 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+.+.|.. +...++|+++.++. +.|.|+..+.. ++...++++.||.|||.|+..
T Consensus 172 ~~A~~~Ga~--il~~~~v~~~~re~-~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 172 RDAAEHGAE--ILTYTRVESLRREG-GVWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHhcccc--hhhcceeeeeeecC-CEEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 666778888 99999999999987 48889988755 777889999999999988743
No 194
>PLN02815 L-aspartate oxidase
Probab=99.19 E-value=2.6e-10 Score=97.72 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=86.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL 69 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 69 (259)
.+||+|||+|.+||++|..+++.| +|+|+||.+..+|.................. ...........+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~ 107 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV 107 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence 479999999999999999999999 9999999887765433322111100000000 000001111111
Q ss_pred eeccccccceec--CCCCCccC-----C-CCCCC---CCCC---CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEe
Q 024975 70 RVNLPRELMGFQ--AYPFVARN-----Y-EGSVD---LRRY---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV 134 (259)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~-----~-~~~~~---~~~~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~ 134 (259)
..+.+.....+. ..+|.... . ..... ...+ .....+...|.+.+.+. +++ +..++.+++|..+
T Consensus 108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~--i~~~~~~~~Li~~ 185 (594)
T PLN02815 108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNIT--FFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCE--EEeceEhheeeee
Confidence 111111100000 11111000 0 00000 0001 13356667776666554 788 9999999999875
Q ss_pred CCC----cEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 135 ESN----KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 135 ~~~----~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
+++ ...+...+ .++....+.++.||+|||.+..
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 322 23455433 2455567899999999997653
No 195
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=3.5e-10 Score=97.36 Aligned_cols=63 Identities=21% Similarity=0.113 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC----CCcEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE----SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~----~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s 166 (259)
...+...|.+.+.+.+++ +..++.|+++..++ +....+...+ .++....+.++.||+|||.++
T Consensus 139 G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVE--FFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 356778888888888998 99999999998654 2333344322 234445789999999999865
No 196
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.18 E-value=2e-10 Score=96.20 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHH----hC--CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFARE----FG--VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~----~~--~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+...+.+.+++ .| ++ ++++++|+++...+++.|.|.+.++ .+.+|+||+|+|.|+..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~--i~~~t~V~~I~~~~~~~~~V~T~~G-----~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKIS--INLNTEVLNIERSNDSLYKIHTNRG-----EIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEE--EEeCCEEEEEEecCCCeEEEEECCC-----EEEeCEEEECcChhHHH
Confidence 5677777777777 66 55 8899999999987546788887653 59999999999987753
No 197
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.18 E-value=7.7e-11 Score=101.07 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=81.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc--C-c----eeeeCCCCC--CCCCCCCCCCCCcccccc--ccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV--G-G----SWIYTSETE--SDPLGVDPNRYPVHSSLY--KSLR 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~--g-g----~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~ 70 (259)
+.+|+|||||++|+++|..|.+.|++|+|||+.+.. + | .....++.. ...++............. ..+.
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~ 160 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRIN 160 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceee
Confidence 478999999999999999999999999999997521 1 1 000000000 000000000000000000 0000
Q ss_pred ec-cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 71 VN-LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 71 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
.. .......+..+..................+..+.+.|.+. .+.+ .++++++|++++..+ +.+++.+.++.
T Consensus 161 ~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~-d~VtV~~~dG~-- 233 (668)
T PLN02927 161 GLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG-DKVTVVLENGQ-- 233 (668)
T ss_pred eeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC-CEEEEEECCCC--
Confidence 00 0000000000000000000000001123566777776443 3333 267889999998765 67888887764
Q ss_pred eEEEEeCEEEEccCCCCCCc
Q 024975 150 VEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~ 169 (259)
.+.+|.||.|.|.+|..+
T Consensus 234 --ti~aDlVVGADG~~S~vR 251 (668)
T PLN02927 234 --RYEGDLLVGADGIWSKVR 251 (668)
T ss_pred --EEEcCEEEECCCCCcHHH
Confidence 789999999999877544
No 198
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.17 E-value=5.5e-10 Score=95.84 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=87.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYK 67 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 67 (259)
.+||+|||+|++|++||..+++. |.+|+|+||....++.............+..... .........
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 47999999999999999999987 5799999998876665433322211111110000 000011111
Q ss_pred cceeccccccceec--CCCCCccCC------CCCC--CC-CCC---CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEE
Q 024975 68 SLRVNLPRELMGFQ--AYPFVARNY------EGSV--DL-RRY---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (259)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~--~~-~~~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (259)
.+....+.....+. ..+|..... .... .. ..+ .....+...|.+.+.+. ++. +..++.++++.
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 160 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM--RYDEWFVTDLL 160 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE--EEeCeEEEEEE
Confidence 11111111111111 112211000 0000 00 011 13456777777766553 677 88899999998
Q ss_pred EeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 133 LVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 133 ~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
.+++....+...+ .++....+.++.||+|||.++.
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 7653333333322 2344567899999999998664
No 199
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.17 E-value=2.5e-10 Score=94.85 Aligned_cols=57 Identities=26% Similarity=0.284 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE-EEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
..+...+.+.+.+.|++ ++.+++|++++..+ +.+ .+.+++ ..+.+|.||+|+|.++.
T Consensus 201 ~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~~v~t~~-----~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEG-GRITGVQTGG-----GVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEEeCC-----cEEeCCEEEECCCcchH
Confidence 57777788888888998 99999999998765 444 455543 26899999999998764
No 200
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=3.2e-10 Score=97.59 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=85.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC---CcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCCC------------CCcccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGV--DPNR------------YPVHSS 64 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g---~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~~------------~~~~~~ 64 (259)
.+||+|||+|.+|++||..+++.| .+|+|+||....++............... .... ......
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~~ 84 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQD 84 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCHH
Confidence 479999999999999999999998 89999999887665443322111111000 0000 000000
Q ss_pred ccccceeccccccceec--CCCCCccCCC----CCCCCCCCC--------CHHHHHHHHHHHHHH-hCCceeEEeceeEE
Q 024975 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE----GSVDLRRYP--------GHEEVLRYLQNFARE-FGVDQVVRLHTEVL 129 (259)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~ 129 (259)
....+..+.+.....+. ..++...... .......++ ....+...|.+.+.+ .+++ ++.++.++
T Consensus 85 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~--i~~~~~v~ 162 (577)
T PRK06069 85 AVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIH--FYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCE--EEECCEEE
Confidence 11111111111100010 1111110000 000011111 234566667666655 5888 99999999
Q ss_pred EEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975 130 NARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 130 ~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s 166 (259)
++...++....+...+ .++....+.++.||+|||.++
T Consensus 163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 9987652223333322 234445789999999999764
No 201
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=5.7e-10 Score=96.03 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=85.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCC---CCCCC------------CCcccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNR------------YPVHSSLY 66 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~---~~~~~------------~~~~~~~~ 66 (259)
+.||+|||+|.+|++||..+++.|.+|+|+||....++.............. ..... ........
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 5799999999999999999999999999999987665433222111100000 00000 00000111
Q ss_pred ccceeccccccceec--CCCCCccCC------CCC---CCCCCC---CCHHHHHHHHHHHHHHhC----CceeEEeceeE
Q 024975 67 KSLRVNLPRELMGFQ--AYPFVARNY------EGS---VDLRRY---PGHEEVLRYLQNFAREFG----VDQVVRLHTEV 128 (259)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~~------~~~---~~~~~~---~~~~~~~~~l~~~~~~~~----~~~~v~~~~~v 128 (259)
..+....+.....+. ..+|..... ... .....+ .....+...|.+.+.+.+ ++ +..++.+
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~--i~~~~~~ 160 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVT--KYEGWEF 160 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcE--EEeeEEE
Confidence 111111111100010 112211000 000 000111 123566677777665543 55 7788899
Q ss_pred EEEEEeCC-CcEEEEEEec-CCceEEEEeCEEEEccCCCCC
Q 024975 129 LNARLVES-NKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 129 ~~i~~~~~-~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~ 167 (259)
+++...++ ....+...+. ++....+.++.||+|||.++.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 161 LGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred EEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 99887532 3444555443 344567899999999998664
No 202
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.15 E-value=3.8e-10 Score=94.71 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+...+.+.+.+.|++ ++++++|++++..+++.|.+.+.+.+ ++...+++|+||+|+|.++..
T Consensus 178 ~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 56777888888788998 99999999999865456887654322 222468999999999987643
No 203
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.15 E-value=8.9e-10 Score=94.29 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=38.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.+||+|||+|.+|+++|..|++.|.+|+|+|+.+..||++...
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s 48 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMS 48 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceecee
Confidence 5899999999999999999999999999999998888765443
No 204
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.15 E-value=6e-10 Score=95.78 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=85.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYK 67 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 67 (259)
.+||+|||+|.+||+||..+++. +.+|+|+||....++................... .........
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 47999999999999999999987 4799999998766654433221111110000000 000011111
Q ss_pred cceeccccccceec--CCCCCccCC------CCCC--CCCC-C---CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEE
Q 024975 68 SLRVNLPRELMGFQ--AYPFVARNY------EGSV--DLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (259)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~--~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (259)
.+..+++.....+. ..+|..... .... ..+. + .....+...|.+.+.+. +++ +..++.++++.
T Consensus 84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 161 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQ--RFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcE--EEeCeEEEEEE
Confidence 11111111110011 112211000 0000 0000 1 12345666666665554 677 88899999998
Q ss_pred EeCCCcEEEEE-EecCCceEEEEeCEEEEccCCCCCC
Q 024975 133 LVESNKWKVKS-RKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 133 ~~~~~~~~v~~-~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
.+++....+.. ...++....+.++.||+|||.++..
T Consensus 162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 76533223332 2223445678999999999986643
No 205
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.15 E-value=1.6e-10 Score=92.67 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=74.7
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEE-eeCCCcCceeeeCCCCCCCCCCCCCCCCCcc-ccccccceeccccccceec
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVY-EKGEQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~-e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (259)
||+|||||.||+.||+.+++.|.+|+++ .+.+.++... |.+...-.. ......+.... .......
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~------------Cnpsigg~~kg~L~~Eidalg-g~m~~~a 67 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS------------CNPSIGGIAKGHLVREIDALG-GLMGRAA 67 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S------------SSSEEESTTHHHHHHHHHHTT--SHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc------------chhhhccccccchhHHHhhhh-hHHHHHH
Confidence 8999999999999999999999999999 3334333211 111000000 00000000000 0000000
Q ss_pred C---CCCCccCCCCCC--C-CCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975 82 A---YPFVARNYEGSV--D-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (259)
Q Consensus 82 ~---~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (259)
+ ..+...+..++. + ...-..+..|.+++++.+... +++ + .+.+|++|..+++..+.|.+.+|. .+.
T Consensus 68 D~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV~~~~g~----~~~ 140 (392)
T PF01134_consen 68 DETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGVVTKDGE----EIE 140 (392)
T ss_dssp HHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEEEETTSE----EEE
T ss_pred hHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEEEeCCCC----EEe
Confidence 0 000000000000 0 111245688999999988774 554 4 578999999876566678887764 899
Q ss_pred eCEEEEccCC
Q 024975 155 FDAVVVCNGH 164 (259)
Q Consensus 155 ad~VIlAtG~ 164 (259)
+|.||+|||.
T Consensus 141 a~~vVlaTGt 150 (392)
T PF01134_consen 141 ADAVVLATGT 150 (392)
T ss_dssp ECEEEE-TTT
T ss_pred cCEEEEeccc
Confidence 9999999995
No 206
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.15 E-value=1.2e-09 Score=91.34 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+.+.|.+.+.+ .+++ ++++++|+++...+++.|++.+.+. .++...++||+||+|+|+|+..
T Consensus 184 ~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred HHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 4555666665543 4788 9999999999887447798875321 2212358999999999998743
No 207
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.15 E-value=3.9e-10 Score=96.34 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=39.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~ 45 (259)
.+||+|||+| +|+++|..+++.|.+|+|+||.+.+||++....
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g 58 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG 58 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence 5899999999 899999999999999999999988998876553
No 208
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.14 E-value=7.7e-10 Score=101.90 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=37.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~ 42 (259)
.+||+|||+|.+|++||..+++.|.+|+|+||.+..||...
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 47999999999999999999999999999999988887654
No 209
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.14 E-value=2e-09 Score=88.20 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=77.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++++|||+|+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------------------------------ 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------------------------------
Confidence 57999999999999999999999999999997533100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
.++ ..+...+.+.+++.+++ +.+++++.++...+ +.+.+.+.++. .+.+|.||+|+
T Consensus 180 ---------------~~~--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vI~a~ 235 (377)
T PRK04965 180 ---------------LMP--PEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTD-SGIRATLDSGR----SIEVDAVIAAA 235 (377)
T ss_pred ---------------hCC--HHHHHHHHHHHHhCCCE--EEECCeEEEEEccC-CEEEEEEcCCc----EEECCEEEECc
Confidence 001 55667777788888998 99999999998764 56777777654 79999999999
Q ss_pred CC
Q 024975 163 GH 164 (259)
Q Consensus 163 G~ 164 (259)
|.
T Consensus 236 G~ 237 (377)
T PRK04965 236 GL 237 (377)
T ss_pred CC
Confidence 94
No 210
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.14 E-value=1.6e-09 Score=93.29 Aligned_cols=43 Identities=37% Similarity=0.491 Sum_probs=38.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.+||+|||+|++|+++|..++++|.+|+|+||....||.....
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s 51 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFS 51 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcccee
Confidence 4799999999999999999999999999999998887665443
No 211
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.14 E-value=5.4e-10 Score=91.93 Aligned_cols=59 Identities=22% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+.+.+...+.+.|... +..++.+..++... +.|.|.+.++ .+.+|.||+|+|.|+..
T Consensus 156 ~~~~~~l~~~~~~~G~~~-~~~~~~~~~~~~~~-~~~~v~t~~g-----~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 156 RLLTRALAAAAEELGVVI-IEGGTPVTSLERDG-RVVGVETDGG-----TIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHHHhcCCeE-EEccceEEEEEecC-cEEEEEeCCc-----cEEeCEEEEcCchHHHH
Confidence 577778888888888541 66688888888753 5678888875 49999999999987543
No 212
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=1.2e-09 Score=93.63 Aligned_cols=42 Identities=36% Similarity=0.610 Sum_probs=37.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--CcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--~~gg~~~~ 43 (259)
.+||+|||+|.+||++|..+++.|.+|+|+||.+ ..||....
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~ 47 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFW 47 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceec
Confidence 4799999999999999999999999999999998 66776543
No 213
>PRK12839 hypothetical protein; Provisional
Probab=99.13 E-value=1.4e-09 Score=93.15 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=38.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.+||+|||+|.+|+++|+.|.+.|.+|+|+||...+||.+...
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~ 50 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWS 50 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccc
Confidence 4799999999999999999999999999999998888776543
No 214
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.13 E-value=1.1e-09 Score=89.17 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=73.6
Q ss_pred eEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCce--eeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975 4 HVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS--WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
||+|||||++|+++|.+|.+. |++|+++|+.+..++. |.......... .... ...+-...+..+....+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~-~~~~-~~~~v~~~W~~~~v~~~~---- 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA-QHAW-LADLVQTDWPGYEVRFPK---- 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh-hhhh-hhhhheEeCCCCEEECcc----
Confidence 799999999999999999987 9999999998876653 33221000000 0000 000000011111111100
Q ss_pred ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI 159 (259)
.... ....+....+.+|.+++.+.+ +.. ++++++|+.+. + +.+++ .+|. .+.++.||
T Consensus 75 -----~~~~----l~~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~--~-~~v~l--~dg~----~~~A~~VI 131 (370)
T TIGR01789 75 -----YRRK----LKTAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLD--A-DGVDL--APGT----RINARSVI 131 (370)
T ss_pred -----hhhh----cCCCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEe--C-CEEEE--CCCC----EEEeeEEE
Confidence 0000 001112234567777765544 333 56688999883 3 33444 5544 79999999
Q ss_pred EccCCCC
Q 024975 160 VCNGHFS 166 (259)
Q Consensus 160 lAtG~~s 166 (259)
.|.|..+
T Consensus 132 ~A~G~~s 138 (370)
T TIGR01789 132 DCRGFKP 138 (370)
T ss_pred ECCCCCC
Confidence 9999653
No 215
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.13 E-value=9.1e-11 Score=70.80 Aligned_cols=37 Identities=38% Similarity=0.625 Sum_probs=34.4
Q ss_pred EECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 7 VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 7 IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
|||||++||++|+.|.+.|.+|+|+|+++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 8999999999999999999999999999999988865
No 216
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.12 E-value=3.3e-11 Score=89.29 Aligned_cols=80 Identities=14% Similarity=0.326 Sum_probs=54.8
Q ss_pred EEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCC-----CCCCCCeEEEEccCcCHHHHH
Q 024975 139 WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIK 213 (259)
Q Consensus 139 ~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~viG~G~~a~e~a 213 (259)
--+.+++|. .+.|++|++||| +.|.+.- ++... .+....+.+.. ....+|.|.|+|.|-+|+|.+
T Consensus 81 hci~t~~g~----~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~ 150 (334)
T KOG2755|consen 81 HCIHTQNGE----KLKYFKLCLCTG--YKPKLQV-EGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELT 150 (334)
T ss_pred ceEEecCCc----eeeEEEEEEecC--CCcceee-cCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHH
Confidence 456666665 899999999999 6776532 11111 22222222222 234679999999999999999
Q ss_pred HHHhcccCeEEEEecCC
Q 024975 214 RDLAGFAKEVHIASRSV 230 (259)
Q Consensus 214 ~~l~~~~~~v~~~~r~~ 230 (259)
.++... +|+|....+
T Consensus 151 yElk~~--nv~w~ikd~ 165 (334)
T KOG2755|consen 151 YELKIL--NVTWKIKDE 165 (334)
T ss_pred HHhhcc--eeEEEecch
Confidence 999766 788888877
No 217
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.12 E-value=4.9e-10 Score=95.61 Aligned_cols=161 Identities=14% Similarity=0.066 Sum_probs=83.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL 69 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 69 (259)
.+||+|||+|.+|++||..+. .|.+|+|+||.+..||.................. ...........+
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~~ 87 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRFL 87 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 479999999999999999996 5999999999887665443322111000000000 000000011111
Q ss_pred eeccccccceec--CCCCCccC-----CCCCC--CCCC-C---CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeC
Q 024975 70 RVNLPRELMGFQ--AYPFVARN-----YEGSV--DLRR-Y---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVE 135 (259)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~-----~~~~~--~~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~ 135 (259)
....+.....+. ..++.... ..... .... + .....+...|.+.+.+ .+++ ++.++.++++..++
T Consensus 88 ~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~--i~~~~~v~~Li~~~ 165 (553)
T PRK07395 88 VEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIE--IISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcE--EEECcChhhheecC
Confidence 111110000000 01111000 00000 0000 1 1235666777776654 4888 99999999998753
Q ss_pred --CCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 136 --SNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 136 --~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
+....+.... ++....+.++.||+|||.++
T Consensus 166 ~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 166 ETGRCQGISLLY-QGQITWLRAGAVILATGGGG 197 (553)
T ss_pred CCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCc
Confidence 2233344433 33445688999999999754
No 218
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.12 E-value=2.9e-09 Score=87.89 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=84.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||||+.|+-.|..+++.|.+|+|+|+.+.+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i-------------------------------------------- 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI-------------------------------------------- 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC--------------------------------------------
Confidence 578999999999999999999999999999998754
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.|.. . +++.+.+...+.+.+++ ++.+++++.++..+ +...+.++++... .+++|.|++|
T Consensus 209 -Lp~~-D--------------~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~-~~v~v~~~~g~~~--~~~ad~vLvA 267 (454)
T COG1249 209 -LPGE-D--------------PEISKELTKQLEKGGVK--ILLNTKVTAVEKKD-DGVLVTLEDGEGG--TIEADAVLVA 267 (454)
T ss_pred -CCcC-C--------------HHHHHHHHHHHHhCCeE--EEccceEEEEEecC-CeEEEEEecCCCC--EEEeeEEEEc
Confidence 1100 0 88889999998887888 99999999998876 4477888776522 6889999999
Q ss_pred cCCCCCCccCC
Q 024975 162 NGHFSVPRLAQ 172 (259)
Q Consensus 162 tG~~s~~~~~~ 172 (259)
+| ..|+...
T Consensus 268 iG--R~Pn~~~ 276 (454)
T COG1249 268 IG--RKPNTDG 276 (454)
T ss_pred cC--CccCCCC
Confidence 99 6666653
No 219
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.12 E-value=4e-09 Score=88.80 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=79.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 206 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL------------------------------------------- 206 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------------------
Confidence 3689999999999999999999999999999975331
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. + ..++...+.+.+.+.+++ ++.+++|.+++..+ +.+.+...++ ....+.+|.||+|
T Consensus 207 --~~-------------~--~~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~g--~~~~i~~D~vi~a 264 (461)
T TIGR01350 207 --PG-------------E--DAEVSKVVAKALKKKGVK--ILTNTKVTAVEKND-DQVVYENKGG--ETETLTGEKVLVA 264 (461)
T ss_pred --CC-------------C--CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEeCC--cEEEEEeCEEEEe
Confidence 00 0 056667777888888999 99999999998765 5566655443 2246999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 265 ~G--~~p~~~ 272 (461)
T TIGR01350 265 VG--RKPNTE 272 (461)
T ss_pred cC--CcccCC
Confidence 99 566554
No 220
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.12 E-value=1.3e-09 Score=93.03 Aligned_cols=163 Identities=19% Similarity=0.151 Sum_probs=85.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKSL 69 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 69 (259)
.+||+|||+|.+|+++|..+.+. .+|+|+||....+|................... ..........+
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 86 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRFI 86 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHHH
Confidence 47999999999999999999887 899999998776654333221111000000000 00000001111
Q ss_pred eeccccccceec--CCCCCccC---------C-CCCCC---CCCCC---CHHHHHHHHHHHHHHh-CCceeEEeceeEEE
Q 024975 70 RVNLPRELMGFQ--AYPFVARN---------Y-EGSVD---LRRYP---GHEEVLRYLQNFAREF-GVDQVVRLHTEVLN 130 (259)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~---------~-~~~~~---~~~~~---~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~ 130 (259)
....+.....+. ..+|.... . ..... ...++ .+..+...|.+.+.+. +++ ++.++.+++
T Consensus 87 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~--v~~~~~v~~ 164 (536)
T PRK09077 87 AENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNIT--VLERHNAID 164 (536)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcE--EEeeEEeee
Confidence 111111000000 11111100 0 00000 00111 2346667677666554 788 999999999
Q ss_pred EEEeC------CCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 131 ARLVE------SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 131 i~~~~------~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
+...+ +....+...+ .+++...+.++.||+|||.++.
T Consensus 165 Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 165 LITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred eeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 87643 2334455543 3355567899999999998654
No 221
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.12 E-value=1.3e-09 Score=94.23 Aligned_cols=63 Identities=19% Similarity=0.036 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEec-CCceEEEEeCEEEEccCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~ 167 (259)
..+...+...+.+.|++ ++.+++|+++...+ +..+.|.+.+. +++...+.+|.||+|+|.|+.
T Consensus 232 ~rl~~al~~~A~~~Ga~--i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 232 SRLNVALACTAALAGAA--VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHhCCcE--EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 67777788888888998 99999999998763 23455565432 233346899999999998864
No 222
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.11 E-value=1.3e-09 Score=93.84 Aligned_cols=43 Identities=37% Similarity=0.482 Sum_probs=38.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.+||+|||+|++|+++|..+.+.|.+|+|+||.+..||.+...
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~ 54 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS 54 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccccc
Confidence 5799999999999999999999999999999998888765543
No 223
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.11 E-value=9.2e-10 Score=84.32 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=95.4
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCC-----CC--CCCCCCCCCcc------------cc
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-----DP--LGVDPNRYPVH------------SS 64 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~-----~~--~~~~~~~~~~~------------~~ 64 (259)
.++|||+|.+||+++..+...+-.|+++|+...+||.........+ .+ +.....+.++. ..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 5899999999999999999987779999999999988766543321 00 11111110000 01
Q ss_pred ccccceeccccccceecC-C-------------CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCceeEEe
Q 024975 65 LYKSLRVNLPRELMGFQA-Y-------------PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------GVDQVVRL 124 (259)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~ 124 (259)
+.+.+..+++.....+.. + ..+.. . ......|+..++.+.|....+++ -+. +..
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRT---H-r~s~plppgfei~~~L~~~l~k~as~~pe~~k--i~~ 164 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRT---H-RSSGPLPPGFEIVKALSTRLKKKASENPELVK--ILL 164 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcc---c-ccCCCCCCchHHHHHHHHHHHHhhhcChHHHh--hhh
Confidence 111222222111100000 0 11111 0 12233445566666665555443 233 778
Q ss_pred ceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 125 ~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
+++|++|..+++....|...+..++...+.++.||+|||.++..
T Consensus 165 nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 165 NSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS 208 (477)
T ss_pred cceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcC
Confidence 99999999877566778877766777789999999999987764
No 224
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.11 E-value=7.4e-10 Score=96.23 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
..+...|.+.+.+.+++ ++.++.++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus 158 ~~l~~~L~~~~~~~gv~--i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVP--VHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHHHHHHhCCCE--EEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 44556677777778998 999999999987653334455443 2355567889999999997654
No 225
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.10 E-value=2.1e-09 Score=90.40 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCCc
Q 024975 103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~~ 169 (259)
..+.+.|.+.+++.+ ++ ++++++|++++..+++.|.+.+.+. ++....+.+++||+|+|.|+...
T Consensus 183 ~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L 249 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPL 249 (494)
T ss_pred HHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHH
Confidence 467777777777766 78 9999999999986545688877541 12223589999999999877543
No 226
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=1.4e-09 Score=93.51 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=37.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~ 42 (259)
.+||+|||+|.+|+++|+.+++.|.+|+|+||.+..||...
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~ 51 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTA 51 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHH
Confidence 47999999999999999999999999999999988776543
No 227
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.10 E-value=1.3e-09 Score=93.87 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=31.4
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (259)
Q Consensus 5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g 38 (259)
|+|||+|++|++||..+++.|.+|+|+||.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6999999999999999999999999999987554
No 228
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=2.7e-09 Score=91.42 Aligned_cols=43 Identities=37% Similarity=0.492 Sum_probs=38.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.+||+|||+|++|+++|..+++.|.+|+|+||.+.+||.+...
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~ 49 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS 49 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccccc
Confidence 4799999999999999999999999999999998887655443
No 229
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.09 E-value=6.3e-09 Score=87.77 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=77.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il------------------------------------------- 216 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL------------------------------------------- 216 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------------------
Confidence 3689999999999999999999999999999975330
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIl 160 (259)
+. +. .++...+.+.+.+.|++ ++.+++|+++....++... +...++ ....+.+|.||+
T Consensus 217 --~~-------------~~--~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~~~~~~~g--~~~~i~~D~vi~ 275 (472)
T PRK05976 217 --PT-------------ED--AELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDGGVLIVAEHNG--EEKTLEADKVLV 275 (472)
T ss_pred --Cc-------------CC--HHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCCCEEEEEEeCC--ceEEEEeCEEEE
Confidence 00 00 56667777788888999 9999999999752113333 333332 234699999999
Q ss_pred ccCCCCCCccC
Q 024975 161 CNGHFSVPRLA 171 (259)
Q Consensus 161 AtG~~s~~~~~ 171 (259)
|+| ..|+.+
T Consensus 276 a~G--~~p~~~ 284 (472)
T PRK05976 276 SVG--RRPNTE 284 (472)
T ss_pred eeC--CccCCC
Confidence 999 566554
No 230
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.09 E-value=9.6e-10 Score=91.19 Aligned_cols=101 Identities=23% Similarity=0.176 Sum_probs=70.2
Q ss_pred HHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCC
Q 024975 114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193 (259)
Q Consensus 114 ~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~ 193 (259)
.+.+++ ++..++|+++.... -.+.+.++ .+.+|++++||| +.+..+. .................
T Consensus 64 ~~~~i~--~~~~~~v~~id~~~---~~v~~~~g-----~~~yd~LvlatG--a~~~~~~----~~~~~~~~~~~~~~~~~ 127 (415)
T COG0446 64 RATGID--VRTGTEVTSIDPEN---KVVLLDDG-----EIEYDYLVLATG--ARPRPPP----ISDWEGVVTLRLREDAE 127 (415)
T ss_pred HhhCCE--EeeCCEEEEecCCC---CEEEECCC-----cccccEEEEcCC--CcccCCC----ccccCceEEECCHHHHH
Confidence 455777 88889999988653 45566554 689999999999 6666655 11111111111111110
Q ss_pred -----CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 194 -----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 194 -----~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
....++++|+|+|..|+++|..+.+.|.+|+++...+
T Consensus 128 ~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 128 ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence 0114789999999999999999999999999999999
No 231
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.08 E-value=2.5e-09 Score=86.38 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCCCcc
Q 024975 104 EVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 104 ~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~~~~ 170 (259)
.+.+.+.+.+.+. +.+ ++++++|++|++.+++.|.|.+.+-. ++...+.+++|++..|+++.+..
T Consensus 182 ~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHhCCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 4445555555554 888 99999999999998677999987643 55678999999999998776653
No 232
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.08 E-value=3e-09 Score=90.40 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=36.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
.+||+|||+| +|+++|+++++.|.+|+|+||.+..||....
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence 4799999999 9999999999999999999999877766544
No 233
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.07 E-value=4.2e-09 Score=87.25 Aligned_cols=58 Identities=19% Similarity=0.049 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCc-EEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
..+...+.+.+.+.|++ ++.+++|+++...+++. +.|.+.++ .+.++.||+|+|.++.
T Consensus 183 ~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-----~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 183 DAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-----FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-----eEECCEEEECCChhhH
Confidence 45666677778888998 99999999998653233 44666553 5899999999987653
No 234
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.06 E-value=8e-09 Score=86.79 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=37.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~ 42 (259)
..+++|||||++||++|.+|.+. |.+|+|+|+.+.+||.+.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 36899999999999999999995 679999999999998864
No 235
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.05 E-value=3.5e-09 Score=87.27 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=77.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+....
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN----------------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh-----------------------------------------
Confidence 579999999999999999999999999999976431110
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
++ ..+..++.+.+.+.+++ ++++++|+++.. + +.+.+.+.++. .+.+|.||+|+
T Consensus 184 ----------------~~--~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~~~~v~l~~g~----~i~aD~Vv~a~ 237 (396)
T PRK09754 184 ----------------AP--PPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-EKVELTLQSGE----TLQADVVIYGI 237 (396)
T ss_pred ----------------cC--HHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-CEEEEEECCCC----EEECCEEEECC
Confidence 00 56667778888888999 999999999875 2 45666676654 79999999999
Q ss_pred CCCCCCc
Q 024975 163 GHFSVPR 169 (259)
Q Consensus 163 G~~s~~~ 169 (259)
| ..|+
T Consensus 238 G--~~pn 242 (396)
T PRK09754 238 G--ISAN 242 (396)
T ss_pred C--CChh
Confidence 9 4554
No 236
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.05 E-value=6e-09 Score=87.70 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=80.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 208 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL------------------------------------------- 208 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------------------
Confidence 3689999999999999999999999999999975431
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. +. .++...+.+.+.+.+++ ++.+++|++++..+ +.+.+.+.++ +....+.+|.||+|
T Consensus 209 --~~-------------~~--~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~g-g~~~~i~~D~vi~a 267 (462)
T PRK06416 209 --PG-------------ED--KEISKLAERALKKRGIK--IKTGAKAKKVEQTD-DGVTVTLEDG-GKEETLEADYVLVA 267 (462)
T ss_pred --Cc-------------CC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEEeC-CeeEEEEeCEEEEe
Confidence 00 00 56677778888888999 99999999998765 5566666554 22347899999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 268 ~G--~~p~~~ 275 (462)
T PRK06416 268 VG--RRPNTE 275 (462)
T ss_pred eC--CccCCC
Confidence 99 555543
No 237
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.04 E-value=8.2e-09 Score=87.07 Aligned_cols=105 Identities=24% Similarity=0.273 Sum_probs=81.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 219 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL------------------------------------------- 219 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------------------
Confidence 3689999999999999999999999999999975331
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. + ..++...+.+.+.+.+++ ++.+++|++++..+ +...+.+.++++....+.+|.|++|
T Consensus 220 --~~-------------~--d~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~~~g~~~~i~~D~vl~a 279 (475)
T PRK06327 220 --AA-------------A--DEQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGG-KGVSVAYTDADGEAQTLEVDKLIVS 279 (475)
T ss_pred --Cc-------------C--CHHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcC-CEEEEEEEeCCCceeEEEcCEEEEc
Confidence 00 0 056667777777788999 99999999998765 4566666554444457999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 280 ~G--~~p~~~ 287 (475)
T PRK06327 280 IG--RVPNTD 287 (475)
T ss_pred cC--CccCCC
Confidence 99 566654
No 238
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.04 E-value=1.8e-09 Score=91.59 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 103 EEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 103 ~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
..+...|.+.+.+. +++ ++.++.++++..+++....+...+. +....+.++.||+|||.++
T Consensus 136 ~~l~~~L~~~~~~~~gV~--i~~~~~v~~Li~~~g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 136 AAIMRALIAAVRATPSIT--VLEGAEARRLLVDDGAVAGVLAATA-GGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHhCCCCE--EEECcChhheeecCCEEEEEEEEeC-CeEEEEECCEEEEcCCCCc
Confidence 56777777777654 788 9999999998765423344555432 2234689999999999865
No 239
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.03 E-value=3.7e-09 Score=90.98 Aligned_cols=43 Identities=37% Similarity=0.414 Sum_probs=38.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.+||+|||+|++|+++|..+.+.|.+|+|+||.+.+||.+...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s 58 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence 4799999999999999999999999999999998888776544
No 240
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.03 E-value=1.1e-08 Score=86.10 Aligned_cols=105 Identities=26% Similarity=0.273 Sum_probs=79.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l------------------------------------------- 208 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL------------------------------------------- 208 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence 3689999999999999999999999999999865331
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. + ..++...+.+.+.+.+++ ++.+++|+++.... +.+.+.+...++....+.+|.||+|
T Consensus 209 --~~-------------~--d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vi~a 268 (466)
T PRK07818 209 --PN-------------E--DAEVSKEIAKQYKKLGVK--ILTGTKVESIDDNG-SKVTVTVSKKDGKAQELEADKVLQA 268 (466)
T ss_pred --Cc-------------c--CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CeEEEEEEecCCCeEEEEeCEEEEC
Confidence 00 0 056667788888888999 99999999998654 4555555422233347999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (466)
T PRK07818 269 IG--FAPRVE 276 (466)
T ss_pred cC--cccCCC
Confidence 99 566543
No 241
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.03 E-value=6.6e-09 Score=86.84 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=76.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 195 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR----------------------------------------- 195 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------------------------------------
Confidence 468999999999999999999999999999997543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+ ..++...+.+.+++.+++ ++.+++|++++..+ +.+.+.. ++ ..+.+|.||+|
T Consensus 196 -----------------~--~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~-~~v~v~~-~g----~~i~~D~viva 248 (438)
T PRK07251 196 -----------------E--EPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDG-DQVLVVT-ED----ETYRFDALLYA 248 (438)
T ss_pred -----------------C--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecC-CEEEEEE-CC----eEEEcCEEEEe
Confidence 0 055666777778888999 99999999998654 4444443 22 37999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 249 ~G--~~p~~~ 256 (438)
T PRK07251 249 TG--RKPNTE 256 (438)
T ss_pred eC--CCCCcc
Confidence 99 566543
No 242
>PRK06116 glutathione reductase; Validated
Probab=99.03 E-value=7.8e-09 Score=86.72 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=79.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 204 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------------ 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------------
Confidence 36899999999999999999999999999998753210
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
.+. .++...+.+.+++.+++ ++.+++|.+++..+++.+.+.+.++. .+.+|.||+|
T Consensus 205 ----------------~~~--~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g~~~v~~~~g~----~i~~D~Vv~a 260 (450)
T PRK06116 205 ----------------GFD--PDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADGSLTLTLEDGE----TLTVDCLIWA 260 (450)
T ss_pred ----------------ccC--HHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCceEEEEEcCCc----EEEeCEEEEe
Confidence 000 56667777888888999 99999999998765333667666543 7899999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 261 ~G--~~p~~~ 268 (450)
T PRK06116 261 IG--REPNTD 268 (450)
T ss_pred eC--CCcCCC
Confidence 99 556544
No 243
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.03 E-value=7.7e-09 Score=87.05 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=79.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 212 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------------ 212 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------
Confidence 36899999999999999999999999999999764310
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
. + ..++...+.+.+.+.+++ ++.+++|+++...+ +.+.+.+.++. .+.+|.||+|
T Consensus 213 ---~-------------~--d~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vi~a 267 (461)
T PRK05249 213 ---F-------------L--DDEISDALSYHLRDSGVT--IRHNEEVEKVEGGD-DGVIVHLKSGK----KIKADCLLYA 267 (461)
T ss_pred ---c-------------C--CHHHHHHHHHHHHHcCCE--EEECCEEEEEEEeC-CeEEEEECCCC----EEEeCEEEEe
Confidence 0 0 066777788888888999 99999999998765 55666665543 6999999999
Q ss_pred cCCCCCCcc
Q 024975 162 NGHFSVPRL 170 (259)
Q Consensus 162 tG~~s~~~~ 170 (259)
+| ..|+.
T Consensus 268 ~G--~~p~~ 274 (461)
T PRK05249 268 NG--RTGNT 274 (461)
T ss_pred ec--CCccc
Confidence 99 55554
No 244
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.01 E-value=4.7e-10 Score=99.35 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=78.9
Q ss_pred CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCc---CceeeeCCCCCCCCCCCCCCCCCccccccccceec-cccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRE 76 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 76 (259)
.+|+||||||+|+++|..|.+. |++|+|+|+++.. |......++........ .......+... ....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-------~~~~~~~~~~~~~~~~ 73 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-------DPVSAAAIGDAFNHWD 73 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-------CHHHHHHHHHhcccCC
Confidence 3899999999999999999998 8999999998753 43333222110000000 00000000000 0000
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
...+.. ..... ........-..+.++.+.|.+.+.+.+++ ++++++|+++.. ....+|
T Consensus 74 ~~~~~~-~g~~~--~~~g~~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~-----------------~~~~~D 131 (765)
T PRK08255 74 DIDVHF-KGRRI--RSGGHGFAGIGRKRLLNILQARCEELGVK--LVFETEVPDDQA-----------------LAADAD 131 (765)
T ss_pred ceEEEE-CCEEE--EECCeeEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhh-----------------hhcCCC
Confidence 000000 00000 00011111256799999999999999998 999988776531 024789
Q ss_pred EEEEccCCCCCCc
Q 024975 157 AVVVCNGHFSVPR 169 (259)
Q Consensus 157 ~VIlAtG~~s~~~ 169 (259)
.||.|+|.+|..+
T Consensus 132 ~VVgADG~~S~vR 144 (765)
T PRK08255 132 LVIASDGLNSRIR 144 (765)
T ss_pred EEEEcCCCCHHHH
Confidence 9999999877553
No 245
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.01 E-value=1.1e-08 Score=85.92 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll------------------------------------------- 206 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL------------------------------------------- 206 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence 3679999999999999999999999999999975331
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. + ..++.+.+.+.+.+.+++ ++.+++|++++... ..+.+.. + +....+.+|.||+|
T Consensus 207 --~~-------------~--d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~-~~v~~~~-~--g~~~~i~~D~vivA 263 (458)
T PRK06912 207 --PG-------------E--DEDIAHILREKLENDGVK--IFTGAALKGLNSYK-KQALFEY-E--GSIQEVNAEFVLVS 263 (458)
T ss_pred --cc-------------c--cHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcC-CEEEEEE-C--CceEEEEeCEEEEe
Confidence 00 0 056677778888888999 99999999997654 3343332 2 22246899999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 264 ~G--~~p~~~ 271 (458)
T PRK06912 264 VG--RKPRVQ 271 (458)
T ss_pred cC--CccCCC
Confidence 99 566653
No 246
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.00 E-value=7.5e-09 Score=88.99 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC---CCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE---SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~---~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+...+...+.+.+++ +..++.++++..++ +..+.+...+ .+++...+.++.||+|||.++..
T Consensus 126 ~~~~r~l~~~l~~~~~~--i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 193 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGD--IFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNV 193 (614)
T ss_pred hhHHHHHHHHHHhCCCe--EEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccc
Confidence 34444555555555566 89999999998754 2344555432 23555678999999999987643
No 247
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.99 E-value=1.6e-08 Score=85.18 Aligned_cols=103 Identities=21% Similarity=0.303 Sum_probs=78.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 202 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------------------- 202 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--------------------------------------------
Confidence 689999999999999999999999999999975431
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+. + ..++...+.+.+.+.+++ ++.+++|+++...+ +.+.+.+...+ ....+.+|.||+|+
T Consensus 203 -~~-------------~--d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~ViiA~ 262 (463)
T TIGR02053 203 -PR-------------E--EPEISAAVEEALAEEGIE--VVTSAQVKAVSVRG-GGKIITVEKPG-GQGEVEADELLVAT 262 (463)
T ss_pred -Cc-------------c--CHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEeE
Confidence 00 0 055667777888888999 99999999998754 45566654311 12479999999999
Q ss_pred CCCCCCccC
Q 024975 163 GHFSVPRLA 171 (259)
Q Consensus 163 G~~s~~~~~ 171 (259)
| ..|+..
T Consensus 263 G--~~p~~~ 269 (463)
T TIGR02053 263 G--RRPNTD 269 (463)
T ss_pred C--CCcCCC
Confidence 9 566554
No 248
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.99 E-value=3.9e-09 Score=83.67 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred CeEEEECCChHHHHHHHHHHHc------CCcEEEEeeCCCcCceeeeCCCCC-CCCCCCCCCCCCccccccccceecccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~------g~~v~v~e~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (259)
+||+||||||+||++|.+|.+. .++|.|+||...+||......... ...-.+.|......+ .+......
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~a----pl~t~vT~ 152 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGA----PLNTPVTS 152 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCC----cccccccc
Confidence 7999999999999999999884 468999999999987654321111 000001111100011 11111111
Q ss_pred ccceecC----CCCCccCCCCCCCCCCCC-CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE-EEEEEec---
Q 024975 76 ELMGFQA----YPFVARNYEGSVDLRRYP-GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKK--- 146 (259)
Q Consensus 76 ~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g--- 146 (259)
+.+.|.. ++.... .......+|. +-.++.++|-+.+++.|++ +.-+..+..+-.++++.+ .+.+++-
T Consensus 153 d~~~fLt~~~~i~vPv~--~pm~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 153 DKFKFLTGKGRISVPVP--SPMDNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cceeeeccCceeecCCC--cccccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeecccccc
Confidence 1111111 111100 0011222443 3378889999999999999 877777777777665433 2444321
Q ss_pred ---C-----CceEEEEeCEEEEccCCC
Q 024975 147 ---D-----DVVEEETFDAVVVCNGHF 165 (259)
Q Consensus 147 ---~-----~~~~~~~ad~VIlAtG~~ 165 (259)
. .+.-.+.++..|+|-|..
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CCCCccccccccceecceeEEEecccc
Confidence 0 111257899999998853
No 249
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.99 E-value=1.8e-09 Score=84.66 Aligned_cols=155 Identities=21% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC-----------cCceeeeCCCCCCCCCCCCCCCCCccccccccce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-----------VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR 70 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~-----------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
.+||+|||||.+|.++|+.|.+.|.+|+|+||+-. +||..... .++......-+.+.....+.
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~------~LGl~Dcve~IDAQ~v~Gy~ 118 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALS------KLGLEDCVEGIDAQRVTGYA 118 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHH------HhCHHHHhhcccceEeeeeE
Confidence 37999999999999999999999999999999721 12211110 00110000000000000000
Q ss_pred eccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
..... ...+.|+.............|-. -.|.+.|++.+... +++ ..+.+|.++-.+++-...|+.++..++
T Consensus 119 ifk~g---k~v~~pyP~~~f~~d~~GrsFhn-GRFvq~lR~ka~slpNV~---~eeGtV~sLlee~gvvkGV~yk~k~ge 191 (509)
T KOG1298|consen 119 IFKDG---KEVDLPYPLKNFPSDPSGRSFHN-GRFVQRLRKKAASLPNVR---LEEGTVKSLLEEEGVVKGVTYKNKEGE 191 (509)
T ss_pred EEeCC---ceeeccCCCcCCCCCcccceeec-cHHHHHHHHHHhcCCCeE---EeeeeHHHHHhccCeEEeEEEecCCCc
Confidence 00000 00111222111111111223322 45667777766554 443 556678887766533345777776677
Q ss_pred eEEEEeCEEEEccCCCCCCc
Q 024975 150 VEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~ 169 (259)
..+..|...|+|.|.+|.-+
T Consensus 192 e~~~~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 192 EVEAFAPLTVVCDGCFSNLR 211 (509)
T ss_pred eEEEecceEEEecchhHHHH
Confidence 78889999999999877544
No 250
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.98 E-value=1.5e-08 Score=85.24 Aligned_cols=104 Identities=27% Similarity=0.347 Sum_probs=78.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il------------------------------------------- 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI------------------------------------------- 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------------------
Confidence 3689999999999999999999999999999976431
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. +. .++...+.+.+.+. ++ ++.+++|+.++..+ +...+.+.++++....+.+|.||+|
T Consensus 211 --~~-------------~d--~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~i~~D~vi~a 269 (471)
T PRK06467 211 --PA-------------AD--KDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKE-DGIYVTMEGKKAPAEPQRYDAVLVA 269 (471)
T ss_pred --Cc-------------CC--HHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcC-CEEEEEEEeCCCcceEEEeCEEEEe
Confidence 00 00 56666777777666 77 89999999998765 5566665543332356999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 270 ~G--~~pn~~ 277 (471)
T PRK06467 270 VG--RVPNGK 277 (471)
T ss_pred ec--ccccCC
Confidence 99 566554
No 251
>PTZ00367 squalene epoxidase; Provisional
Probab=98.98 E-value=1.4e-09 Score=92.59 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4799999999999999999999999999999975
No 252
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.98 E-value=1.6e-08 Score=84.69 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=79.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~----------------------------------------- 204 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS----------------------------------------- 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----------------------------------------
Confidence 368999999999999999999999999999997643100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. .++...+.+.+.+.+++ ++.+++|+++....++...+.++++. ..+.+|.||+|
T Consensus 205 -----------------~d--~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~v~~~~g~---~~i~~D~vi~a 260 (450)
T TIGR01421 205 -----------------FD--SMISETITEEYEKEGIN--VHKLSKPVKVEKTVEGKLVIHFEDGK---SIDDVDELIWA 260 (450)
T ss_pred -----------------cC--HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCceEEEEECCCc---EEEEcCEEEEe
Confidence 00 56777788888888999 99999999998654233556665542 46899999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 261 ~G--~~pn~~ 268 (450)
T TIGR01421 261 IG--RKPNTK 268 (450)
T ss_pred eC--CCcCcc
Confidence 99 566543
No 253
>PRK06370 mercuric reductase; Validated
Probab=98.97 E-value=2.3e-08 Score=84.15 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=78.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 209 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR----------------------------------------- 209 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence 368999999999999999999999999999997643100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+ ..++...+.+.+.+.+++ ++++++|.+++..+ +...+.+...+ ....+.+|.||+|
T Consensus 210 -----------------~--~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~Vi~A 266 (463)
T PRK06370 210 -----------------E--DEDVAAAVREILEREGID--VRLNAECIRVERDG-DGIAVGLDCNG-GAPEITGSHILVA 266 (463)
T ss_pred -----------------c--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEC
Confidence 0 055667777888888999 99999999998764 44555544211 1246899999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 267 ~G--~~pn~~ 274 (463)
T PRK06370 267 VG--RVPNTD 274 (463)
T ss_pred cC--CCcCCC
Confidence 99 566644
No 254
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.97 E-value=7.4e-09 Score=86.37 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE--EEEEecCCceEEEEeCEEEEccCCCCC
Q 024975 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~--v~~~~g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
...+...|.+.+++.+++ ++++++|+++..++++.+. +...++. ..+.++.||+|||.++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~~---~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 122 GKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVGT---HRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCCc---EEEEcCEEEEcCCCccc
Confidence 456788888888889999 9999999999876312233 3332221 47889999999997554
No 255
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.97 E-value=1.8e-08 Score=84.36 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=77.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 204 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------ 204 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence 57999999999999999999999999999987532000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+. .++...+.+.+.+.+++ ++.+++|.++...+ +.+.+.+.++. .+.+|.||+|+
T Consensus 205 ----------------~d--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~viva~ 259 (446)
T TIGR01424 205 ----------------FD--DDMRALLARNMEGRGIR--IHPQTSLTSITKTD-DGLKVTLSHGE----EIVADVVLFAT 259 (446)
T ss_pred ----------------cC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEcCCc----EeecCEEEEee
Confidence 00 56667777778888999 99999999998754 44666665543 79999999999
Q ss_pred CCCCCCcc
Q 024975 163 GHFSVPRL 170 (259)
Q Consensus 163 G~~s~~~~ 170 (259)
| ..|+.
T Consensus 260 G--~~pn~ 265 (446)
T TIGR01424 260 G--RSPNT 265 (446)
T ss_pred C--CCcCC
Confidence 9 55554
No 256
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.97 E-value=2.6e-08 Score=83.80 Aligned_cols=104 Identities=27% Similarity=0.302 Sum_probs=78.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il------------------------------------------- 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC------------------------------------------- 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------------------
Confidence 4689999999999999999999999999999865431
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl 160 (259)
+. +. .++...+.+.+.+.+++ ++.+++|+++...+ +.+.+.+... ++....+.+|.|++
T Consensus 211 --~~-------------~d--~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 211 --PG-------------TD--TETAKTLQKALTKQGMK--FKLGSKVTGATAGA-DGVSLTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred --CC-------------CC--HHHHHHHHHHHHhcCCE--EEECcEEEEEEEcC-CeEEEEEEEcCCCceeEEEeCEEEE
Confidence 00 00 55667777888888999 99999999998654 4555555421 12235799999999
Q ss_pred ccCCCCCCcc
Q 024975 161 CNGHFSVPRL 170 (259)
Q Consensus 161 AtG~~s~~~~ 170 (259)
|+| ..|+.
T Consensus 271 a~G--~~pn~ 278 (466)
T PRK06115 271 AIG--RRPYT 278 (466)
T ss_pred ccC--Ccccc
Confidence 999 55554
No 257
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.96 E-value=1.9e-08 Score=83.99 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE--EEEEecCCceEEEEeCEEEEccCC
Q 024975 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGH 164 (259)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~--v~~~~g~~~~~~~~ad~VIlAtG~ 164 (259)
..+.+|.++|.+.+.+.|++ ++.+ +|+++...+ +++. |.++++ .++++|+||.|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~-~g~i~~v~~~~g----~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDE-DGRITAVRLDDG----RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-T-TSEEEEEEETTS----EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcC-CCCEEEEEECCC----CEEEEeEEEECCCc
Confidence 35689999999999999999 6655 688888876 5444 455444 38999999999995
No 258
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.95 E-value=1.1e-08 Score=83.76 Aligned_cols=40 Identities=35% Similarity=0.617 Sum_probs=36.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~ 42 (259)
++|+|||||++||++|++|.+++ .+++|||+++++||...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 47999999999999999999998 89999999999997653
No 259
>PLN02507 glutathione reductase
Probab=98.95 E-value=2.5e-08 Score=84.45 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=79.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+-+|..|.+.|.+|+|+++.+.+-..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 241 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG----------------------------------------- 241 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-----------------------------------------
Confidence 368999999999999999999999999999987532100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. .++...+.+.+.+.+++ ++.+++|.++...+ +...+.+.++. .+.+|.|++|
T Consensus 242 -----------------~d--~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~-~~~~v~~~~g~----~i~~D~vl~a 295 (499)
T PLN02507 242 -----------------FD--DEMRAVVARNLEGRGIN--LHPRTNLTQLTKTE-GGIKVITDHGE----EFVADVVLFA 295 (499)
T ss_pred -----------------cC--HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CeEEEEECCCc----EEEcCEEEEe
Confidence 00 66777788888888999 99999999998754 55666665543 6999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 296 ~G--~~pn~~ 303 (499)
T PLN02507 296 TG--RAPNTK 303 (499)
T ss_pred ec--CCCCCC
Confidence 99 555543
No 260
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.94 E-value=2.9e-08 Score=79.96 Aligned_cols=44 Identities=34% Similarity=0.528 Sum_probs=40.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~ 45 (259)
..||+|||+|.+||++|+.|.+.|++|+|+|..+++||++....
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r 50 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTAR 50 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEe
Confidence 47999999999999999999999999999999999998875543
No 261
>PRK07846 mycothione reductase; Reviewed
Probab=98.93 E-value=2.5e-08 Score=83.51 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=74.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll------------------------------------------- 202 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL------------------------------------------- 202 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------------------
Confidence 4689999999999999999999999999999975431
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. +. .++.+.+.+.. +.+++ ++.++++++++..+ +...+.+.++. .+.+|.|++|
T Consensus 203 --~~-------------~d--~~~~~~l~~l~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a 257 (451)
T PRK07846 203 --RH-------------LD--DDISERFTELA-SKRWD--VRLGRNVVGVSQDG-SGVTLRLDDGS----TVEADVLLVA 257 (451)
T ss_pred --cc-------------cC--HHHHHHHHHHH-hcCeE--EEeCCEEEEEEEcC-CEEEEEECCCc----EeecCEEEEE
Confidence 00 00 45555555544 45787 89999999998654 45666665543 7999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 258 ~G--~~pn~~ 265 (451)
T PRK07846 258 TG--RVPNGD 265 (451)
T ss_pred EC--CccCcc
Confidence 99 556544
No 262
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.93 E-value=2.3e-08 Score=80.88 Aligned_cols=134 Identities=23% Similarity=0.420 Sum_probs=92.2
Q ss_pred eEEEECCChHHHHHHHHHHHc-------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccce
Q 024975 4 HVAVIGAGAAGLVVGHELLRE-------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR 70 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~-------------g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
+|+|+|||+.|+-+|..|.++ .++|+++|+.+.+-
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-------------------------------- 204 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-------------------------------- 204 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--------------------------------
Confidence 699999999999999999774 13889999976540
Q ss_pred eccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (259)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (259)
| .++ +++..+.++.+++.|++ ++.++.|++++.+. |++++++
T Consensus 205 -------------p-------------~~~--~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~~-----v~~~~g~--- 246 (405)
T COG1252 205 -------------P-------------MFP--PKLSKYAERALEKLGVE--VLLGTPVTEVTPDG-----VTLKDGE--- 246 (405)
T ss_pred -------------c-------------CCC--HHHHHHHHHHHHHCCCE--EEcCCceEEECCCc-----EEEccCC---
Confidence 1 111 88899999999999999 99999999998543 5666554
Q ss_pred EEEEeCEEEEccCCCCCCccCCCCCCCC-CCCceEEcccCCCCCCCCCCeEEEEccCcCHH
Q 024975 151 EEETFDAVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYASGL 210 (259)
Q Consensus 151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~ 210 (259)
..+.++.+|.|+|....+..-++.+.+. -.|........... ..+.|.++|--....
T Consensus 247 ~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~---~~~~IFa~GD~A~~~ 304 (405)
T COG1252 247 EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVP---GHPDIFAAGDCAAVI 304 (405)
T ss_pred eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccC---CCCCeEEEeccccCC
Confidence 2599999999999744444444322332 23444433322222 235588888655443
No 263
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.92 E-value=6.1e-09 Score=82.68 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g 38 (259)
++.+|+|||||++|+++|..|.+.|++|+|+|+...+.
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 46899999999999999999999999999999976654
No 264
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.92 E-value=3e-08 Score=83.49 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=78.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------ 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence 57999999999999999999999999999987533100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+. .++...+.+.+.+.+++ ++.++++++++..+ +.+.+.+.++. .+.+|.|++|+
T Consensus 216 ----------------~d--~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~l~~D~vl~a~ 270 (466)
T PRK07845 216 ----------------ED--ADAAEVLEEVFARRGMT--VLKRSRAESVERTG-DGVVVTLTDGR----TVEGSHALMAV 270 (466)
T ss_pred ----------------CC--HHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeC-CEEEEEECCCc----EEEecEEEEee
Confidence 00 55667788888888999 99999999998665 55666665543 79999999999
Q ss_pred CCCCCCccC
Q 024975 163 GHFSVPRLA 171 (259)
Q Consensus 163 G~~s~~~~~ 171 (259)
| ..|+..
T Consensus 271 G--~~pn~~ 277 (466)
T PRK07845 271 G--SVPNTA 277 (466)
T ss_pred c--CCcCCC
Confidence 9 556543
No 265
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.91 E-value=3.8e-09 Score=85.19 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=68.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||||++||++|+.|++.|++++++||++.+||.....+. .
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k-------------------------~--------- 169 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNK-------------------------T--------- 169 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhc-------------------------c---------
Confidence 468999999999999999999999999999999999998654210 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~ 147 (259)
+|- .-++---+...+.+....-+++ +...++|..+.-.- +.|+|.++...
T Consensus 170 -FP~------------~dcs~C~LaP~m~~v~~hp~i~--l~TyaeV~ev~G~v-GnF~vki~kkp 219 (622)
T COG1148 170 -FPT------------NDCSICILAPKMVEVSNHPNIE--LITYAEVEEVSGSV-GNFTVKIEKKP 219 (622)
T ss_pred -CCC------------cccchhhccchhhhhccCCcee--eeeeeeeeeecccc-cceEEEEeccc
Confidence 000 0001122333445555555777 88899999988665 77999888643
No 266
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.91 E-value=2.3e-08 Score=90.31 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
.+||+|||+|.+|+++|..+.+.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999764
No 267
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89 E-value=2.6e-09 Score=90.10 Aligned_cols=56 Identities=25% Similarity=0.260 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH 164 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~ 164 (259)
..+.+.|.+.+++.|.+ |+++++|.+|..++++..++...++ ..+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~--I~~~~~V~~I~v~~g~g~~~~~~~g----~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGE--IRTGAEVSQILVEGGKGVGVRTSDG----ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCE--EECCCceEEEEEeCCcceEEecccc----ceeccceeEecCch
Confidence 45667778888889999 9999999999988755566766665 36899999988774
No 268
>PTZ00058 glutathione reductase; Provisional
Probab=98.88 E-value=6.3e-08 Score=82.67 Aligned_cols=102 Identities=18% Similarity=0.336 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il------------------------------------------- 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL------------------------------------------- 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------------------
Confidence 3689999999999999999999999999999975331
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. +. .++...+.+.+++.+++ ++.++++.++...+++...+...++. ..+.+|.|++|
T Consensus 274 --~~-------------~d--~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~~v~v~~~~~~---~~i~aD~VlvA 331 (561)
T PTZ00058 274 --RK-------------FD--ETIINELENDMKKNNIN--IITHANVEEIEKVKEKNLTIYLSDGR---KYEHFDYVIYC 331 (561)
T ss_pred --cc-------------CC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCCcEEEEECCCC---EEEECCEEEEC
Confidence 00 00 56677778888888999 99999999998654233444443322 46999999999
Q ss_pred cCCCCCCcc
Q 024975 162 NGHFSVPRL 170 (259)
Q Consensus 162 tG~~s~~~~ 170 (259)
+| ..|+.
T Consensus 332 ~G--r~Pn~ 338 (561)
T PTZ00058 332 VG--RSPNT 338 (561)
T ss_pred cC--CCCCc
Confidence 99 45554
No 269
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.88 E-value=5.6e-08 Score=81.89 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (259)
+.+++|||+|+.|+-+|..+... |.+|+|+++.+.+...
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------------------------------------- 228 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------------------------------------- 228 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc--------------------------------------
Confidence 36799999999999999876554 8999999997643100
Q ss_pred eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V 158 (259)
+. .++...+.+.+++.+++ ++.++.++++...+++...+.+.++. .+.+|.|
T Consensus 229 --------------------~d--~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~v 280 (486)
T TIGR01423 229 --------------------FD--STLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGK----TLDVDVV 280 (486)
T ss_pred --------------------cC--HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCC----EEEcCEE
Confidence 00 67778888888888999 99999999998754333556655443 7999999
Q ss_pred EEccCCCCCCccC
Q 024975 159 VVCNGHFSVPRLA 171 (259)
Q Consensus 159 IlAtG~~s~~~~~ 171 (259)
++|+| ..|+..
T Consensus 281 l~a~G--~~Pn~~ 291 (486)
T TIGR01423 281 MMAIG--RVPRTQ 291 (486)
T ss_pred EEeeC--CCcCcc
Confidence 99999 555543
No 270
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.88 E-value=2.3e-08 Score=77.54 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=38.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
+.+|+|||+|++||+||+.|.++ .+|++||.+..+||..+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcccee
Confidence 47899999999999999999988 7999999999999877654
No 271
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.86 E-value=5.7e-08 Score=81.05 Aligned_cols=97 Identities=21% Similarity=0.335 Sum_probs=74.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------------------- 174 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------------------- 174 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------------------
Confidence 5899999999999999999999999999998653200
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
..+. .++...+.+.+++.|++ ++++++|.++...+ .. +.+.++. .+.+|.||+|+
T Consensus 175 --------------~~~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~--~~-v~~~~g~----~i~~D~vi~a~ 229 (427)
T TIGR03385 175 --------------KLFD--EEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE--RV-KVFTSGG----VYQADMVILAT 229 (427)
T ss_pred --------------cccC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC--CE-EEEcCCC----EEEeCEEEECC
Confidence 0000 56667778888888999 99999999997543 23 3444443 79999999999
Q ss_pred CCCCCCc
Q 024975 163 GHFSVPR 169 (259)
Q Consensus 163 G~~s~~~ 169 (259)
| ..|+
T Consensus 230 G--~~p~ 234 (427)
T TIGR03385 230 G--IKPN 234 (427)
T ss_pred C--ccCC
Confidence 9 4444
No 272
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.86 E-value=6.6e-08 Score=80.96 Aligned_cols=98 Identities=22% Similarity=0.364 Sum_probs=76.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 194 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------------------- 194 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--------------------------------------------
Confidence 579999999999999999999999999999965320
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+. +. .++...+.+.+.+.+++ ++++++|.++...+ +.+.+..+++ .+.+|.|++|+
T Consensus 195 -~~-------------~~--~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~i~~D~vl~a~ 250 (441)
T PRK08010 195 -PR-------------ED--RDIADNIATILRDQGVD--IILNAHVERISHHE-NQVQVHSEHA-----QLAVDALLIAS 250 (441)
T ss_pred -CC-------------cC--HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEcCC-----eEEeCEEEEee
Confidence 00 00 56667788888888999 99999999998764 4455554332 48899999999
Q ss_pred CCCCCCcc
Q 024975 163 GHFSVPRL 170 (259)
Q Consensus 163 G~~s~~~~ 170 (259)
| ..|+.
T Consensus 251 G--~~pn~ 256 (441)
T PRK08010 251 G--RQPAT 256 (441)
T ss_pred c--CCcCC
Confidence 9 55554
No 273
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.86 E-value=4.5e-08 Score=82.06 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 185 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------------------- 185 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC--------------------------------------------
Confidence 589999999999999999999999999998865320
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+ ..+. .++.+++.+.+++.+++ ++.+++|+++...+ +.+.+.+++ . .+.+|.||+|+
T Consensus 186 -~------------~~~~--~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~d~vi~a~ 242 (444)
T PRK09564 186 -P------------DSFD--KEITDVMEEELRENGVE--LHLNEFVKSLIGED-KVEGVVTDK-G----EYEADVVIVAT 242 (444)
T ss_pred -c------------hhcC--HHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-cEEEEEeCC-C----EEEcCEEEECc
Confidence 0 0001 67778888888889999 99999999996532 334444433 2 68999999999
Q ss_pred CC
Q 024975 163 GH 164 (259)
Q Consensus 163 G~ 164 (259)
|.
T Consensus 243 G~ 244 (444)
T PRK09564 243 GV 244 (444)
T ss_pred CC
Confidence 94
No 274
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.86 E-value=1.1e-08 Score=83.02 Aligned_cols=38 Identities=37% Similarity=0.501 Sum_probs=34.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g 38 (259)
|+.||+|||||++|+.+|+.|+++|++|+|+|+.+...
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 67899999999999999999999999999999876543
No 275
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.85 E-value=4.6e-09 Score=87.88 Aligned_cols=43 Identities=40% Similarity=0.534 Sum_probs=40.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
+++|+|||||++||+||.+|.+.|++|+|+|..+++||+....
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~ 57 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF 57 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence 5799999999999999999999999999999999999987654
No 276
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.85 E-value=7.5e-08 Score=80.70 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=73.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------------------- 207 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH----------------------------------------- 207 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----------------------------------------
Confidence 368999999999999999999999999999987533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+ . .++...+.+.. +.+++ ++.+++|++++..+ +.+.+.+.++. .+.+|.|++|
T Consensus 208 -~----------------d--~~~~~~l~~~~-~~gI~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a 260 (452)
T TIGR03452 208 -L----------------D--EDISDRFTEIA-KKKWD--IRLGRNVTAVEQDG-DGVTLTLDDGS----TVTADVLLVA 260 (452)
T ss_pred -c----------------C--HHHHHHHHHHH-hcCCE--EEeCCEEEEEEEcC-CeEEEEEcCCC----EEEcCEEEEe
Confidence 0 0 44455555544 35788 89999999998765 45666665543 7999999999
Q ss_pred cCCCCCCcc
Q 024975 162 NGHFSVPRL 170 (259)
Q Consensus 162 tG~~s~~~~ 170 (259)
+| ..|+.
T Consensus 261 ~G--~~pn~ 267 (452)
T TIGR03452 261 TG--RVPNG 267 (452)
T ss_pred ec--cCcCC
Confidence 99 55554
No 277
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.84 E-value=2e-08 Score=85.33 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=85.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCC-------CC----------CCCcccc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD-------PN----------RYPVHSS 64 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~-------~~----------~~~~~~~ 64 (259)
++||+|||+|.+||.+|..+++.|.+|+|+||....+|.........+...... +. .......
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd 85 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQD 85 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCHH
Confidence 579999999999999999999999999999998766533222211111111111 00 0000111
Q ss_pred ccccceeccccccceecC--CCCCccCCC------CCC---CCCCC---CCHHHHHHHHHHHHHH-hCCceeEEeceeEE
Q 024975 65 LYKSLRVNLPRELMGFQA--YPFVARNYE------GSV---DLRRY---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVL 129 (259)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~---~~~~~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~ 129 (259)
....+...++.....+.. .++...... ... ....| .....+...|.+.+.+ .+++ +..+..++
T Consensus 86 ~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~--~~~~~~~~ 163 (562)
T COG1053 86 AVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIE--IFDEYFVL 163 (562)
T ss_pred HHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcch--hhhhhhhh
Confidence 112222222222111111 111111000 000 01122 1235566666666655 3445 67777888
Q ss_pred EEEEeCCC-cEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975 130 NARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 130 ~i~~~~~~-~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s 166 (259)
++..++++ ...+...+ .++....+.++.||+|||...
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 88766533 23333332 235667788999999999765
No 278
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.83 E-value=2e-08 Score=81.01 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=88.2
Q ss_pred CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc------cccccccceeccccccceecC---CCCCccCCCCCCC
Q 024975 25 GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV------HSSLYKSLRVNLPRELMGFQA---YPFVARNYEGSVD 95 (259)
Q Consensus 25 g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 95 (259)
|.+|+|+|+++.+|.....+.+.+++.++..+...+. ....+..+....+.+...|.. .++.. ...
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~-----e~~ 75 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFV-----GSS 75 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEE-----CCC
Confidence 4689999999999977777777777666654321110 011233333334444333321 11111 245
Q ss_pred CCCCC---CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCcc
Q 024975 96 LRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 96 ~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~ 170 (259)
.+.|| ...++...|...+++.+++ ++++++|++| .+ +.|.+.+..+. ..+.||.||+|||+.+.|..
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i--~~-~~~~v~~~~~~---~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGW--QG-GTLRFETPDGQ---STIEADAVVLALGGASWSQL 145 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEE--eC-CcEEEEECCCc---eEEecCEEEEcCCCcccccc
Confidence 67787 4578999999999999999 9999999999 22 45888775432 35899999999998665544
No 279
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.83 E-value=6.1e-08 Score=76.23 Aligned_cols=105 Identities=27% Similarity=0.331 Sum_probs=90.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|..||-++.--.+.|-+|+++|-.+.+|+..-
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD--------------------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD--------------------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence 46899999999999999999999999999999877654421
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl 160 (259)
.++.+.++..+++.+++ +.++++|+......++...+++++.. +...++++|.+.+
T Consensus 252 ---------------------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 252 ---------------------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred ---------------------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence 78889999999999999 99999999999987667888887754 6678899999999
Q ss_pred ccCCCCCCcc
Q 024975 161 CNGHFSVPRL 170 (259)
Q Consensus 161 AtG~~s~~~~ 170 (259)
|+| ..|..
T Consensus 309 siG--RrP~t 316 (506)
T KOG1335|consen 309 SIG--RRPFT 316 (506)
T ss_pred Ecc--Ccccc
Confidence 999 55554
No 280
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.80 E-value=8.1e-08 Score=80.24 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=74.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------------------------------ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------------------------------ 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------------------------------
Confidence 58999999999999999999999999999997543100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+. .++...+.+.+++.|++ ++.+++|.+++. . .+.+.++. .+.+|.|++|+
T Consensus 187 ----------------~d--~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~---~--~v~~~~g~----~~~~D~vl~a~ 237 (438)
T PRK13512 187 ----------------MD--ADMNQPILDELDKREIP--YRLNEEIDAING---N--EVTFKSGK----VEHYDMIIEGV 237 (438)
T ss_pred ----------------cC--HHHHHHHHHHHHhcCCE--EEECCeEEEEeC---C--EEEECCCC----EEEeCEEEECc
Confidence 00 56667778888888999 999999999862 2 35555543 68999999999
Q ss_pred CCCCCCcc
Q 024975 163 GHFSVPRL 170 (259)
Q Consensus 163 G~~s~~~~ 170 (259)
| ..|+.
T Consensus 238 G--~~pn~ 243 (438)
T PRK13512 238 G--THPNS 243 (438)
T ss_pred C--CCcCh
Confidence 9 55543
No 281
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.80 E-value=1.8e-07 Score=78.82 Aligned_cols=103 Identities=26% Similarity=0.362 Sum_probs=76.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 206 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------------------------------------------ 206 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------------
Confidence 36899999999999999999999999999999754310
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
. + ..++...+.+.+++. ++ +++++++.+++..++...++...+ +....+.+|.|++|
T Consensus 207 ---~-------------~--d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~~v~~~~~~--~~~~~i~~D~vi~a 263 (460)
T PRK06292 207 ---L-------------E--DPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDEKVEELEKG--GKTETIEADYVLVA 263 (460)
T ss_pred ---c-------------h--hHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCceEEEEEcC--CceEEEEeCEEEEc
Confidence 0 0 056667777777777 88 999999999986542133443222 22347999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 264 ~G--~~p~~~ 271 (460)
T PRK06292 264 TG--RRPNTD 271 (460)
T ss_pred cC--CccCCC
Confidence 99 566654
No 282
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.80 E-value=7.1e-08 Score=85.92 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=77.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+-+|..|.+.|.+|+|+++.+.+-..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~------------------------------------------ 178 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK------------------------------------------ 178 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh------------------------------------------
Confidence 57999999999999999999999999999986532000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
.+. ......+.+.+.+.|++ ++.++.++++.... ....|.+.++. .+.+|.||+|+
T Consensus 179 ---------------~ld--~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~-~~~~v~~~dG~----~i~~D~Vi~a~ 234 (785)
T TIGR02374 179 ---------------QLD--QTAGRLLQRELEQKGLT--FLLEKDTVEIVGAT-KADRIRFKDGS----SLEADLIVMAA 234 (785)
T ss_pred ---------------hcC--HHHHHHHHHHHHHcCCE--EEeCCceEEEEcCC-ceEEEEECCCC----EEEcCEEEECC
Confidence 000 55667777888888999 99999999887543 44556676654 79999999999
Q ss_pred CCCCCCcc
Q 024975 163 GHFSVPRL 170 (259)
Q Consensus 163 G~~s~~~~ 170 (259)
| ..|+.
T Consensus 235 G--~~Pn~ 240 (785)
T TIGR02374 235 G--IRPND 240 (785)
T ss_pred C--CCcCc
Confidence 9 45544
No 283
>PRK14694 putative mercuric reductase; Provisional
Probab=98.78 E-value=2e-07 Score=78.61 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l-------------------------------------------- 213 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL-------------------------------------------- 213 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------------------
Confidence 368999999999999999999999999999874211
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. + ..++...+.+.+++.+++ ++.+++|.+++..+ +.+.+.+.+ . .+.+|.||+|
T Consensus 214 --~~-------------~--~~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~D~vi~a 268 (468)
T PRK14694 214 --SQ-------------E--DPAVGEAIEAAFRREGIE--VLKQTQASEVDYNG-REFILETNA-G----TLRAEQLLVA 268 (468)
T ss_pred --CC-------------C--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEECC-C----EEEeCEEEEc
Confidence 00 0 056677788888888999 99999999998654 445554432 2 5999999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (468)
T PRK14694 269 TG--RTPNTE 276 (468)
T ss_pred cC--CCCCcC
Confidence 99 555543
No 284
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.77 E-value=1.7e-07 Score=75.47 Aligned_cols=58 Identities=24% Similarity=0.400 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
.++.+.+.+.+..+|.+ ++++++|.++...++....+.+.+|. .+.+|+||+|.|+.+
T Consensus 173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~----~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGE----EIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCc----EEecCEEEEccCcch
Confidence 46777888899999999 99999999999987445778888875 899999999999844
No 285
>PRK14727 putative mercuric reductase; Provisional
Probab=98.77 E-value=2.1e-07 Score=78.70 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=75.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+-+|..|.+.|.+|+++++...+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l-------------------------------------------- 223 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL-------------------------------------------- 223 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------------------
Confidence 368999999999999999999999999999874210
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. + ..++...+.+.+++.+++ ++.+++|+.++..+ +.+.+...++ .+.+|.||+|
T Consensus 224 --~~-------------~--d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~i~aD~VlvA 278 (479)
T PRK14727 224 --FR-------------E--DPLLGETLTACFEKEGIE--VLNNTQASLVEHDD-NGFVLTTGHG-----ELRAEKLLIS 278 (479)
T ss_pred --Cc-------------c--hHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeC-CEEEEEEcCC-----eEEeCEEEEc
Confidence 00 0 056677788888888999 99999999998765 5566654432 5889999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 279 ~G--~~pn~~ 286 (479)
T PRK14727 279 TG--RHANTH 286 (479)
T ss_pred cC--CCCCcc
Confidence 99 455543
No 286
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.77 E-value=1.9e-07 Score=79.21 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=76.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+-+|..|.+.|.+|+++++.. +. .
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l---~---------------------------------------- 218 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PL---R---------------------------------------- 218 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cc---c----------------------------------------
Confidence 589999999999999999999999999998632 10 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
.+. .++.+.+.+.+++.+++ ++.++.+..+...+ +...+.+.++. .+.+|.|++|+
T Consensus 219 ---------------~~d--~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~i~~D~vl~a~ 274 (499)
T PTZ00052 219 ---------------GFD--RQCSEKVVEYMKEQGTL--FLEGVVPINIEKMD-DKIKVLFSDGT----TELFDTVLYAT 274 (499)
T ss_pred ---------------cCC--HHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcC-CeEEEEECCCC----EEEcCEEEEee
Confidence 000 56677888888888999 99999999888754 44556665543 68999999999
Q ss_pred CCCCCCccC
Q 024975 163 GHFSVPRLA 171 (259)
Q Consensus 163 G~~s~~~~~ 171 (259)
| ..|+..
T Consensus 275 G--~~pn~~ 281 (499)
T PTZ00052 275 G--RKPDIK 281 (499)
T ss_pred C--CCCCcc
Confidence 9 555543
No 287
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.77 E-value=4.8e-08 Score=79.88 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=33.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg 39 (259)
.||+|||||++|+.+|..|+++|++|+|+|+.+..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999998776543
No 288
>PRK07208 hypothetical protein; Provisional
Probab=98.76 E-value=1.2e-08 Score=86.36 Aligned_cols=42 Identities=43% Similarity=0.569 Sum_probs=39.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
++||+|||||++||++|+.|.++|++|+|+|+.+.+||.+..
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 579999999999999999999999999999999999988644
No 289
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.75 E-value=2.8e-07 Score=77.80 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=77.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+-+|..|.+.|.+|+++++. .+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------------------- 215 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------------------------------- 215 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--------------------------------------------
Confidence 57999999999999999999999999999873 210
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
+ .+. .++..++.+.+++.+++ ++.++.+..+...+ +...+...++.. ...+.+|.|++|+
T Consensus 216 -~-------------~~d--~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~~~~-~~~i~~D~vl~a~ 275 (484)
T TIGR01438 216 -R-------------GFD--QDCANKVGEHMEEHGVK--FKRQFVPIKVEQIE-AKVKVTFTDSTN-GIEEEYDTVLLAI 275 (484)
T ss_pred -c-------------ccC--HHHHHHHHHHHHHcCCE--EEeCceEEEEEEcC-CeEEEEEecCCc-ceEEEeCEEEEEe
Confidence 0 000 66777888888888999 99999998988664 445566554321 2368999999999
Q ss_pred CCCCCCccC
Q 024975 163 GHFSVPRLA 171 (259)
Q Consensus 163 G~~s~~~~~ 171 (259)
| ..|+..
T Consensus 276 G--~~pn~~ 282 (484)
T TIGR01438 276 G--RDACTR 282 (484)
T ss_pred c--CCcCCC
Confidence 9 555543
No 290
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.75 E-value=1.7e-07 Score=77.85 Aligned_cols=100 Identities=26% Similarity=0.422 Sum_probs=78.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+.+|..|.++|++|+++|+.+.+++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~---------------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL---------------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence 6899999999999999999999999999999876543321
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE--EEEEecCCceEEEEeCEEEE
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~--v~~~~g~~~~~~~~ad~VIl 160 (259)
. ..+...+.+..++.+++ ++.+.++..++...+.... +...++. .+.+|.+++
T Consensus 177 -----------------~--~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~d~~~~ 231 (415)
T COG0446 177 -----------------D--PEVAEELAELLEKYGVE--LLLGTKVVGVEGKGNTLVVERVVGIDGE----EIKADLVII 231 (415)
T ss_pred -----------------h--HHHHHHHHHHHHHCCcE--EEeCCceEEEEcccCcceeeEEEEeCCc----EEEeeEEEE
Confidence 0 45667788888888988 8999999999976522222 3444443 799999999
Q ss_pred ccCCCCCCc
Q 024975 161 CNGHFSVPR 169 (259)
Q Consensus 161 AtG~~s~~~ 169 (259)
++| ..|+
T Consensus 232 ~~g--~~p~ 238 (415)
T COG0446 232 GPG--ERPN 238 (415)
T ss_pred eec--cccc
Confidence 999 4553
No 291
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=2.9e-08 Score=81.53 Aligned_cols=148 Identities=19% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.|||+|||||.||+.||...++.|.+++++--+..-=|.+.-++. --.+.+..+... .+.+--.. ....+..
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPa------IGG~~KG~lvrE-IDALGG~M-g~~~D~~ 75 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPA------IGGPGKGHLVRE-IDALGGLM-GKAADKA 75 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccc------cCCcccceeEEe-ehhccchH-HHhhhhc
Confidence 389999999999999999999999999999887432222221111 111111000000 00000000 0000000
Q ss_pred CCCCCccCCCCCCCCCCC-----CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEE
Q 024975 82 AYPFVARNYEGSVDLRRY-----PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEET 154 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ 154 (259)
...+...+. ...+... ..+..+...++..+... ++ ..++..|+++...++. .+.|.+.+|. .+.
T Consensus 76 ~IQ~r~LN~--sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL---~l~q~~v~dli~e~~~~v~GV~t~~G~----~~~ 146 (621)
T COG0445 76 GIQFRMLNS--SKGPAVRAPRAQADKWLYRRAMKNELENQPNL---HLLQGEVEDLIVEEGQRVVGVVTADGP----EFH 146 (621)
T ss_pred CCchhhccC--CCcchhcchhhhhhHHHHHHHHHHHHhcCCCc---eehHhhhHHHhhcCCCeEEEEEeCCCC----eee
Confidence 111111111 1112222 22345666677766554 44 4667788898876643 5778888876 899
Q ss_pred eCEEEEccCCCC
Q 024975 155 FDAVVVCNGHFS 166 (259)
Q Consensus 155 ad~VIlAtG~~s 166 (259)
|+.||++||.+-
T Consensus 147 a~aVVlTTGTFL 158 (621)
T COG0445 147 AKAVVLTTGTFL 158 (621)
T ss_pred cCEEEEeecccc
Confidence 999999999643
No 292
>PRK13748 putative mercuric reductase; Provisional
Probab=98.74 E-value=2.4e-07 Score=79.97 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=76.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+.+++|||+|+.|+-+|..|.+.|.+|+|+++...+ .
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----~--------------------------------------- 306 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----F--------------------------------------- 306 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----c---------------------------------------
Confidence 368999999999999999999999999999884211 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
. + ..++...+.+.+++.+++ ++.+++|.+++..+ +.+.+.+.++ .+.+|.||+|
T Consensus 307 --~--------------~--d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a 360 (561)
T PRK13748 307 --R--------------E--DPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVD-GEFVLTTGHG-----ELRADKLLVA 360 (561)
T ss_pred --c--------------c--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEecCC-----eEEeCEEEEc
Confidence 0 0 056777888888888999 99999999998654 5555554432 5899999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 361 ~G--~~pn~~ 368 (561)
T PRK13748 361 TG--RAPNTR 368 (561)
T ss_pred cC--CCcCCC
Confidence 99 566653
No 293
>PLN02546 glutathione reductase
Probab=98.74 E-value=2.4e-07 Score=79.17 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
..+|+|||+|+.|+-+|..|.+.+.+|+|+++.+.+...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~----------------------------------------- 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG----------------------------------------- 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------------
Confidence 368999999999999999999999999999987533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. .++..++.+.+.+.|++ ++.++++.++....++...+...++ ....+|.||+|
T Consensus 291 -----------------~d--~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g~v~v~~~~g----~~~~~D~Viva 345 (558)
T PLN02546 291 -----------------FD--EEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADGSLSLKTNKG----TVEGFSHVMFA 345 (558)
T ss_pred -----------------cC--HHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCCEEEEEECCe----EEEecCEEEEe
Confidence 00 66777888888888999 9999999999865434344443321 23458999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 346 ~G--~~Pnt~ 353 (558)
T PLN02546 346 TG--RKPNTK 353 (558)
T ss_pred ec--cccCCC
Confidence 99 555543
No 294
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.73 E-value=1.9e-07 Score=83.41 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=78.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+++|||+|+.|+-+|..|.+.|.+|+|+++.+.+-
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------------------- 181 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------------------- 181 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch--------------------------------------------
Confidence 579999999999999999999999999999875320
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEEEc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+.... .+....+.+.+++.|++ ++.++.+.++..... ....+.+.++. .+.+|.||+|
T Consensus 182 -~~~ld--------------~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~~~~v~~~dG~----~i~~D~Vv~A 240 (847)
T PRK14989 182 -AEQLD--------------QMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEARKTMRFADGS----ELEVDFIVFS 240 (847)
T ss_pred -hhhcC--------------HHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCceEEEEECCCC----EEEcCEEEEC
Confidence 00000 66677888888899999 999999999975431 33456666655 7999999999
Q ss_pred cCCCCCCcc
Q 024975 162 NGHFSVPRL 170 (259)
Q Consensus 162 tG~~s~~~~ 170 (259)
+| ..|+.
T Consensus 241 ~G--~rPn~ 247 (847)
T PRK14989 241 TG--IRPQD 247 (847)
T ss_pred CC--cccCc
Confidence 99 55553
No 295
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.73 E-value=1.8e-08 Score=81.48 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=38.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
|+|++|||||++|+++|..|.+.|.+|+|+|+.+.+||.+..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 579999999999999999999999999999999999987643
No 296
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.72 E-value=1.9e-08 Score=84.55 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=37.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~ 43 (259)
++|+|||||++||+||+.|.+.| .+|+|+|+++.+||.+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 47999999999999999999987 899999999999987654
No 297
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.72 E-value=1.8e-07 Score=76.19 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=85.8
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-----------CCc-ccccccccee
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-----------YPV-HSSLYKSLRV 71 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~ 71 (259)
||+|||+|.+||++|+.|.+. .+|+|+-|.+...+...+........+....+. ..+ .......+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999998654222211111110001111100 000 0011111111
Q ss_pred ccccccceec--CCCCCccCCC------CCCC-C------CCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeC
Q 024975 72 NLPRELMGFQ--AYPFVARNYE------GSVD-L------RRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVE 135 (259)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~~~------~~~~-~------~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~ 135 (259)
..+.....+. ..+|+..... .... . .. ..+..+...|...+.+ -+++ ++.++.+.++..++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~--v~e~~~a~~li~~~ 164 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNIT--VLEGAEALDLIIED 164 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcE--EEecchhhhhhhcC
Confidence 1111111111 1222221100 0000 0 01 2346777888877765 5888 88888999988877
Q ss_pred CCcE-EEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 136 SNKW-KVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 136 ~~~~-~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
+... .+.+.+..++...+.++.||+|||+.+
T Consensus 165 ~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 165 GIGVAGVLVLNRNGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred CceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence 4244 566654322457889999999999744
No 298
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.72 E-value=2e-08 Score=84.64 Aligned_cols=43 Identities=30% Similarity=0.478 Sum_probs=39.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~~~ 44 (259)
++||+|||||++||++|+.|.++ |.+|+|+|+++.+||.+...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~ 48 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTV 48 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEE
Confidence 58999999999999999999998 99999999999999886543
No 299
>PLN02268 probable polyamine oxidase
Probab=98.71 E-value=2.2e-08 Score=83.69 Aligned_cols=42 Identities=29% Similarity=0.466 Sum_probs=39.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.+|+|||||++||+||+.|.+.|.+|+|+|+.+++||.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~ 42 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTD 42 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeec
Confidence 489999999999999999999999999999999999987654
No 300
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.70 E-value=8.1e-07 Score=73.98 Aligned_cols=90 Identities=30% Similarity=0.413 Sum_probs=70.6
Q ss_pred eEEEECCChHHHHHHHHHHH--------------cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccc
Q 024975 4 HVAVIGAGAAGLVVGHELLR--------------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL 69 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~--------------~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (259)
+++|||+|+.|+-+|..|.+ .+.+|+++++.+.+..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~------------------------------ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG------------------------------ 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc------------------------------
Confidence 79999999999999999976 3678999998753310
Q ss_pred eeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
.++ ..+.+++.+.+.+.|++ ++.+++|.++.. + .+.+++|.
T Consensus 225 ----------------------------~~~--~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~---~--~v~~~~g~-- 265 (424)
T PTZ00318 225 ----------------------------SFD--QALRKYGQRRLRRLGVD--IRTKTAVKEVLD---K--EVVLKDGE-- 265 (424)
T ss_pred ----------------------------cCC--HHHHHHHHHHHHHCCCE--EEeCCeEEEEeC---C--EEEECCCC--
Confidence 011 56778888888899999 999999998863 2 35566654
Q ss_pred eEEEEeCEEEEccCC
Q 024975 150 VEEETFDAVVVCNGH 164 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~ 164 (259)
.+.+|.||+|+|.
T Consensus 266 --~i~~d~vi~~~G~ 278 (424)
T PTZ00318 266 --VIPTGLVVWSTGV 278 (424)
T ss_pred --EEEccEEEEccCC
Confidence 7999999999994
No 301
>PRK07233 hypothetical protein; Provisional
Probab=98.68 E-value=2.8e-08 Score=83.06 Aligned_cols=40 Identities=38% Similarity=0.689 Sum_probs=37.3
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
+|+|||||++||++|+.|.+.|++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6899999999999999999999999999999999987643
No 302
>PLN02576 protoporphyrinogen oxidase
Probab=98.67 E-value=3e-08 Score=84.34 Aligned_cols=43 Identities=37% Similarity=0.572 Sum_probs=39.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~~~ 44 (259)
++||+|||||++||++|++|.+. |.+|+|+|+.+.+||.+...
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~ 55 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSV 55 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEe
Confidence 46899999999999999999999 99999999999999886544
No 303
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.67 E-value=3.5e-08 Score=83.17 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=38.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHc------CCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~------g~~v~v~e~~~~~gg~~~~~ 44 (259)
|++|+|||||++||++|+.|.+. +.+|+|+|+++++||.+...
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~ 49 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV 49 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEE
Confidence 57899999999999999999986 37999999999999886543
No 304
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.66 E-value=2.6e-08 Score=83.41 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
..+++.|...+.+.|+. +..++.|++|....++.+.|++..|+ +++.+||.|+|.|.
T Consensus 187 ~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~~~gVeT~~G~-----iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGAL--VIENCPVTGLHVETDKFGGVETPHGS-----IETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcE--EEecCCcceEEeecCCccceeccCcc-----eecceEEechhHHH
Confidence 67889999999999999 99999999999877678889999875 99999999999876
No 305
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=2e-08 Score=63.03 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=46.5
Q ss_pred eEEEEccCcCHHHHHHHHhcccCeEEEEecCCC------cccc----cCC-CCCCCceEeeeeeEEeeccC
Q 024975 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------DETH----EKQ-PGYDNMWLHSMVRTKKCSRM 258 (259)
Q Consensus 199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~------~~~~----~~~-~~~~~~~~~~~v~~~~~~~~ 258 (259)
+++|||+|++|+|+|..|.+.+.+|++++|++. ++.. +.+ ....++++++.+++++....
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~ 71 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD 71 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC
Confidence 589999999999999999999999999999992 2222 222 22246666799999887654
No 306
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.64 E-value=7.4e-07 Score=77.41 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=75.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+|+|||+|+.|+-+|..|.+.|.+|+++|+.+.+..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~------------------------------------------- 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP------------------------------------------- 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-------------------------------------------
Confidence 5799999999999999999999999999999764310
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCceeEEeceeEEEEEEeCCC-cEEEEEEe---cC--C------c
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESN-KWKVKSRK---KD--D------V 149 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~---g~--~------~ 149 (259)
. + ..++..++.+.. .+.+++ ++.++.|.++...++. .+.+...+ ++ + .
T Consensus 350 --~-------------~--d~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 410 (659)
T PTZ00153 350 --L-------------L--DADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMND 410 (659)
T ss_pred --c-------------C--CHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEecccccccccccccccc
Confidence 0 0 055666666654 567899 9999999999865422 24444332 11 0 1
Q ss_pred eEEEEeCEEEEccCCCCCCccC
Q 024975 150 VEEETFDAVVVCNGHFSVPRLA 171 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~~ 171 (259)
...+.+|.|++|+| ..|+..
T Consensus 411 ~~~i~aD~VlvAtG--r~Pnt~ 430 (659)
T PTZ00153 411 IKETYVDSCLVATG--RKPNTN 430 (659)
T ss_pred ceEEEcCEEEEEEC--cccCCc
Confidence 13699999999999 566654
No 307
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=4.6e-08 Score=80.20 Aligned_cols=43 Identities=37% Similarity=0.535 Sum_probs=39.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~ 45 (259)
++|+|+|||.|||+||+.|+++|++|+|+|.++++||.+..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~ 43 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR 43 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeee
Confidence 4799999999999999999999999999999999998865543
No 308
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.63 E-value=4.2e-08 Score=83.29 Aligned_cols=39 Identities=41% Similarity=0.555 Sum_probs=36.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~ 41 (259)
.||+|||||++||++|..|+++|++|+|+|+++.+||.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 699999999999999999999999999999999998764
No 309
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.62 E-value=5.3e-08 Score=82.67 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
..+.+.|.+.+++.|.+ ++++++|++|...+++.+.|.+.++. .+.+|.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~g~----~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQ--IRYRARVTKIILENGKAVGVKLADGE----KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCeeeEEEecCCcEEEEEeCCCC----EEEcCEEEECCChHH
Confidence 45667778888888999 99999999998775456777777654 789999999998643
No 310
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.60 E-value=3.2e-07 Score=73.72 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccC
Q 024975 117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNG 163 (259)
Q Consensus 117 ~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG 163 (259)
.+. ++.+++|++++..+++.|.+.+.+.. ++...+.+|.||+|||
T Consensus 293 ~~~--l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 293 RLR--LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp -SE--EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred CeE--EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 455 78899999999987558999999844 6778899999999999
No 311
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.59 E-value=7.6e-08 Score=73.99 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=39.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
|+|++|||||.+|+.+|..|+++|.+|+|+||.+.+||.|..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 589999999999999999999999999999999999999754
No 312
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.59 E-value=6.3e-08 Score=79.30 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=91.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC---------------------------------
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE--------------------------------- 48 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~--------------------------------- 48 (259)
.+||+|||||..|..||+-..-+|+++.++|++++..|+........
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ll 146 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERANLL 146 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999998776654431110
Q ss_pred -CCCCCCCCCCCCccccccccceeccccccceecCC----------------------CCCccCCCCCCCCCCCC--CH-
Q 024975 49 -SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY----------------------PFVARNYEGSVDLRRYP--GH- 102 (259)
Q Consensus 49 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~--~~- 102 (259)
..|+-+.+-+.. -..|.|++..-.+..+.+-++ |....... ...-.|- +.
T Consensus 147 e~APhLs~~lPIm--lPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L--~Ga~VYyDGQ~n 222 (680)
T KOG0042|consen 147 EIAPHLSQPLPIM--LPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNL--KGAMVYYDGQHN 222 (680)
T ss_pred hcCccccCCccee--eehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCc--eeEEEEecCCCc
Confidence 122222222111 123444443333222222111 11110000 0000000 00
Q ss_pred -HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE-EEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975 103 -EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 -~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+.-.+.-.+.+.|.. +....+|.++.++.++.. .+...+. +|+...+.++.||-|||.++..
T Consensus 223 DaRmnl~vAlTA~r~GA~--v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs 289 (680)
T KOG0042|consen 223 DARMNLAVALTAARNGAT--VLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDS 289 (680)
T ss_pred hHHHHHHHHHHHHhcchh--hhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence 22333334444566887 788888888887764422 3444442 3777899999999999987643
No 313
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.59 E-value=6.1e-08 Score=82.54 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH 164 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~ 164 (259)
..+.+.|.+.+++.|.+ +++++.|++|...+++.+.|.+.++. .+.+|.||+|++.
T Consensus 219 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~V~~~~g~----~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGE--LRLNAEVIRIETEGGRATAVHLADGE----RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCE--EEECCeEEEEEeeCCEEEEEEECCCC----EEECCEEEECCcH
Confidence 34556667777778988 99999999998775344677777654 7899999999884
No 314
>PLN02568 polyamine oxidase
Probab=98.58 E-value=9.8e-08 Score=81.26 Aligned_cols=43 Identities=30% Similarity=0.546 Sum_probs=38.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC-----CcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g-----~~v~v~e~~~~~gg~~~~~ 44 (259)
.+||+|||||++||++|..|.+.| .+|+|+|+.+.+||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 368999999999999999999887 8999999999999886543
No 315
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.56 E-value=1.4e-06 Score=66.25 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC------CcEEEEeeCCCcCce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGS 40 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g------~~v~v~e~~~~~gg~ 40 (259)
.++|+|||||+.|+++|++|.+.+ ++|+|||+..-.||.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 368999999999999999999986 799999997655533
No 316
>PRK10262 thioredoxin reductase; Provisional
Probab=98.55 E-value=2.2e-06 Score=68.81 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=73.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++++|||+|..|+-+|..|.+.+.+|+++++.+.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-------------------------------------------- 182 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-------------------------------------------- 182 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--------------------------------------------
Confidence 589999999999999999999999999999964210
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC--CceEEEEeCEEEE
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVVV 160 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~ad~VIl 160 (259)
....+...+.+.+.+.+++ ++.++.++++...+.+...+.+.++. +....+.+|.||+
T Consensus 183 ------------------~~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~ 242 (321)
T PRK10262 183 ------------------AEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV 242 (321)
T ss_pred ------------------CCHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEE
Confidence 0033445566666677888 88999999997643222235554432 2335799999999
Q ss_pred ccCCCCCCcc
Q 024975 161 CNGHFSVPRL 170 (259)
Q Consensus 161 AtG~~s~~~~ 170 (259)
|+| ..|+.
T Consensus 243 a~G--~~p~~ 250 (321)
T PRK10262 243 AIG--HSPNT 250 (321)
T ss_pred EeC--CccCh
Confidence 999 45543
No 317
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.51 E-value=2.3e-06 Score=73.04 Aligned_cols=98 Identities=21% Similarity=0.253 Sum_probs=70.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+|+|||||+.|+-+|..|++.+.+|+++++.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------- 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------- 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------
Confidence 589999999999999999999999999998754220
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl 160 (259)
. ...+.+.+.+ .|++ +++++.++++...++....|.+.++. ++...+.+|.|++
T Consensus 389 --------------------~--~~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~ 444 (515)
T TIGR03140 389 --------------------A--DKVLQDKLKSLPNVD--ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444 (515)
T ss_pred --------------------h--hHHHHHHHhcCCCCE--EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 0 0123344443 5888 99999999997653232346665542 4445799999999
Q ss_pred ccCCCCCCcc
Q 024975 161 CNGHFSVPRL 170 (259)
Q Consensus 161 AtG~~s~~~~ 170 (259)
|+| ..|+.
T Consensus 445 a~G--~~Pn~ 452 (515)
T TIGR03140 445 QIG--LVPNT 452 (515)
T ss_pred EeC--CcCCc
Confidence 999 55554
No 318
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.51 E-value=1.3e-07 Score=79.48 Aligned_cols=40 Identities=40% Similarity=0.573 Sum_probs=36.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
+|+|||||++||++|+.|.++|++|+|+|+.+.+||.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999986543
No 319
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.50 E-value=2.6e-07 Score=74.82 Aligned_cols=42 Identities=33% Similarity=0.622 Sum_probs=37.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~ 44 (259)
.+|||||||.+||+||.+|.+.| .+++|+|..+++||+....
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti 64 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTI 64 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeE
Confidence 57999999999999999999876 4999999999999886543
No 320
>PLN02676 polyamine oxidase
Probab=98.47 E-value=2.2e-07 Score=78.44 Aligned_cols=42 Identities=24% Similarity=0.493 Sum_probs=38.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~ 43 (259)
++||+|||||++||++|.+|.+.|. +|+|+|+.+.+||.+..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 4799999999999999999999998 69999999999987543
No 321
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.46 E-value=3.8e-06 Score=66.62 Aligned_cols=93 Identities=22% Similarity=0.257 Sum_probs=66.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
.+|+|||+|+.|+-+|..|.+.+.+|+++++.+.+.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------------------------------------------- 177 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------------------------------------------- 177 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------------------------------
Confidence 589999999999999999999999999999854210
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl 160 (259)
. .. .+.+.+.+. +++ ++.++++.++...+ ....+.+.+. ++....+.+|.||+
T Consensus 178 ----~--------------~~----~~~~~l~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~ 232 (300)
T TIGR01292 178 ----A--------------EK----ILLDRLRKNPNIE--FLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFI 232 (300)
T ss_pred ----c--------------CH----HHHHHHHhCCCeE--EEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEE
Confidence 0 02 223334455 888 88899999997643 3334444432 23346799999999
Q ss_pred ccCC
Q 024975 161 CNGH 164 (259)
Q Consensus 161 AtG~ 164 (259)
|+|.
T Consensus 233 a~G~ 236 (300)
T TIGR01292 233 AIGH 236 (300)
T ss_pred eeCC
Confidence 9993
No 322
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.44 E-value=2.8e-06 Score=72.94 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCC
Q 024975 107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI 176 (259)
Q Consensus 107 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~ 176 (259)
.|+.....+.+++ ++.+++|++|..+.+....|.+.++......+.++.||+|.|+...|++....|+
T Consensus 198 ~~l~~a~~r~nl~--i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI 265 (532)
T TIGR01810 198 AYLHPAMKRPNLE--VQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI 265 (532)
T ss_pred HHhhhhccCCCeE--EEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence 4555444455787 9999999999986533445666543322334689999999998777877655554
No 323
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.43 E-value=3.4e-07 Score=77.16 Aligned_cols=40 Identities=43% Similarity=0.652 Sum_probs=36.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
+|+|||||++|+++|+.|.+.|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999986544
No 324
>PLN02529 lysine-specific histone demethylase 1
Probab=98.41 E-value=4.3e-07 Score=79.41 Aligned_cols=43 Identities=37% Similarity=0.502 Sum_probs=39.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.++|+|||||++|++||..|.++|++|+|+|+.+.+||.+...
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~ 202 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQ 202 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeee
Confidence 4789999999999999999999999999999999998876543
No 325
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.39 E-value=6.2e-06 Score=70.52 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=70.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++|+|||+|..|+-+|..|...+.+|+++++.+.+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------------------------------- 387 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------------------------------- 387 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------------------
Confidence 589999999999999999999999999998864220
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl 160 (259)
. . ..+.+.+.+ .+++ +++++.++++...++....+.+.+.. ++...+.+|.|++
T Consensus 388 -~------------------~---~~l~~~l~~~~gI~--i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~ 443 (517)
T PRK15317 388 -A------------------D---QVLQDKLRSLPNVT--IITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFV 443 (517)
T ss_pred -c------------------c---HHHHHHHhcCCCcE--EEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence 0 0 123333333 4888 99999999998654222335555432 4445799999999
Q ss_pred ccCCCCCCcc
Q 024975 161 CNGHFSVPRL 170 (259)
Q Consensus 161 AtG~~s~~~~ 170 (259)
|+| ..|+.
T Consensus 444 ~~G--~~p~~ 451 (517)
T PRK15317 444 QIG--LVPNT 451 (517)
T ss_pred eEC--CccCc
Confidence 999 45543
No 326
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.38 E-value=5.8e-06 Score=67.22 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=85.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
..|+++|+|..|+-+|..|...+.+|+++++.+.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------------------------- 248 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------------------------- 248 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------------------------------------------
Confidence 46999999999999999999999999999997522
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEEeCEEEEc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+ ...|. ..+.+.++.+.++.+++ +..++.+.+++.++++ ...|.+.++. .+.+|.||+.
T Consensus 249 --~----------~~lf~--~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Gev~~V~l~dg~----~l~adlvv~G 308 (478)
T KOG1336|consen 249 --L----------PRLFG--PSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGEVSEVKLKDGK----TLEADLVVVG 308 (478)
T ss_pred --h----------hhhhh--HHHHHHHHHHHHhcCeE--EEEecceeecccCCCCcEEEEEeccCC----EeccCeEEEe
Confidence 0 01121 77888899999999999 9999999999987743 4557788876 8999999999
Q ss_pred cCCCCCCccCCCC
Q 024975 162 NGHFSVPRLAQVP 174 (259)
Q Consensus 162 tG~~s~~~~~~~~ 174 (259)
+| ..|+.+.+.
T Consensus 309 iG--~~p~t~~~~ 319 (478)
T KOG1336|consen 309 IG--IKPNTSFLE 319 (478)
T ss_pred ec--ccccccccc
Confidence 99 667665544
No 327
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.36 E-value=4.5e-07 Score=75.21 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=39.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.+..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 489999999999999999999999999999999999988763
No 328
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.36 E-value=1.2e-06 Score=69.99 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=65.5
Q ss_pred HhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCC-CCCCC-CCCCceEEcc---cC
Q 024975 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-SWPGKQMHSH---NY 189 (259)
Q Consensus 115 ~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~-~~~~~~~~~~---~~ 189 (259)
.-|+- +..+.+|+.|...+ -.|.+++|. +|.||.++|||| ..|+..+ +.... .....+.... +|
T Consensus 269 nGGvA--vl~G~kvvkid~~d---~~V~LnDG~----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit~fr~p~DF 337 (659)
T KOG1346|consen 269 NGGVA--VLRGRKVVKIDEED---KKVILNDGT----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKITYFRYPADF 337 (659)
T ss_pred cCceE--EEeccceEEeeccc---CeEEecCCc----EeehhheeeecC--cCcccchhhhhcCHHhhhheeEEecchHH
Confidence 34666 88888999988654 467888876 899999999999 6666443 22111 1111222111 11
Q ss_pred CCCC--CCCCCeEEEEccCcCHHHHHHHHhcc----cCeEEEEecC
Q 024975 190 RIPN--PFQDQVVILIGHYASGLDIKRDLAGF----AKEVHIASRS 229 (259)
Q Consensus 190 ~~~~--~~~~~~v~viG~G~~a~e~a~~l~~~----~~~v~~~~r~ 229 (259)
.... ....++|.|||+|+.|-|++..|.+. +.+|+-+-..
T Consensus 338 ~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~E 383 (659)
T KOG1346|consen 338 KRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEE 383 (659)
T ss_pred HHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecc
Confidence 1110 11347899999999999999999654 4455544333
No 329
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.36 E-value=5.6e-07 Score=79.20 Aligned_cols=42 Identities=43% Similarity=0.562 Sum_probs=38.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
..+|+|||||++|+++|+.|.+.|++|+|+|+.+.+||....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 478999999999999999999999999999999999887543
No 330
>PLN02487 zeta-carotene desaturase
Probab=98.36 E-value=7.1e-07 Score=76.27 Aligned_cols=41 Identities=44% Similarity=0.631 Sum_probs=37.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~ 42 (259)
+++|+|||+|++|+++|+.|.++|++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 35999999999999999999999999999999999987653
No 331
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.34 E-value=1.4e-05 Score=62.36 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=34.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--CcCce
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGS 40 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--~~gg~ 40 (259)
.+|++|||+|.+||.+|.+|+.+|.+|+|+|+.. .+||.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 4799999999999999999999999999999964 35554
No 332
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.32 E-value=8.2e-06 Score=63.66 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQV 37 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~ 37 (259)
..||+|||||-.|.+.|+.|.++ |++|+|+|+++..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 36899999999999999999874 7899999998643
No 333
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.32 E-value=1e-05 Score=66.21 Aligned_cols=90 Identities=24% Similarity=0.382 Sum_probs=65.5
Q ss_pred CeEEEECCChHHHHHHHHHHHc----C--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccc
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE----G--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~----g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (259)
.+|+|||+|+.|+.+|..|.+. | .+|+|+ ..+.+.
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------------------- 186 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------------------- 186 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc--------------------------------------
Confidence 4799999999999999999853 4 478888 322110
Q ss_pred cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad 156 (259)
+ .++ ..+...+.+.+.+.+++ ++.++++.++.. + .+.+.++. .+.+|
T Consensus 187 -------~-------------~~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~---~--~v~~~~g~----~i~~D 233 (364)
T TIGR03169 187 -------P-------------GFP--AKVRRLVLRLLARRGIE--VHEGAPVTRGPD---G--ALILADGR----TLPAD 233 (364)
T ss_pred -------c-------------cCC--HHHHHHHHHHHHHCCCE--EEeCCeeEEEcC---C--eEEeCCCC----EEecC
Confidence 0 001 55667778888888999 999999988752 2 45555544 79999
Q ss_pred EEEEccCC
Q 024975 157 AVVVCNGH 164 (259)
Q Consensus 157 ~VIlAtG~ 164 (259)
.||+|+|.
T Consensus 234 ~vi~a~G~ 241 (364)
T TIGR03169 234 AILWATGA 241 (364)
T ss_pred EEEEccCC
Confidence 99999994
No 334
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.29 E-value=1.1e-05 Score=65.53 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCc-EEEEeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKG 34 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~ 34 (259)
.+++|||+|+.|+-+|..|.+.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5799999999999999999999987 9999875
No 335
>PLN02612 phytoene desaturase
Probab=98.28 E-value=1.2e-06 Score=75.35 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=37.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~ 42 (259)
.++|+|||||++|+++|++|.++|++++|+|+.+.+||...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999999999999999988887653
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.27 E-value=8.8e-05 Score=62.35 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
++|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999998863
No 337
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.26 E-value=3.5e-06 Score=64.33 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
...+..||...+.+.|++ ..+.+|.+++... .-.||.||-|||.++..
T Consensus 150 ~~~ylpyl~k~l~e~Gve---f~~r~v~~l~E~~----------------~~~~DVivNCtGL~a~~ 197 (342)
T KOG3923|consen 150 GPKYLPYLKKRLTENGVE---FVQRRVESLEEVA----------------RPEYDVIVNCTGLGAGK 197 (342)
T ss_pred chhhhHHHHHHHHhcCcE---EEEeeeccHHHhc----------------cCCCcEEEECCcccccc
Confidence 378899999999999987 4456777776432 24689999999987644
No 338
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.25 E-value=1e-06 Score=69.92 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCceeEEeceeEEEEEEe--CCCcEEEEEEecCCc--eEEEEeCEEEEccCCCCCCccCCCCCC
Q 024975 104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKDDV--VEEETFDAVVVCNGHFSVPRLAQVPGI 176 (259)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~~~--~~~~~ad~VIlAtG~~s~~~~~~~~g~ 176 (259)
....||.....+.+++ ++.+++|++|... ......|.+.+.++. ...+.++.||+|.|+...|+++...|+
T Consensus 194 ~~~~~L~~a~~~~n~~--l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 194 AATTYLPPALKRPNLT--LLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHHTTTTTEE--EEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhhcccchhhccCCcc--EEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 3455677666555888 9999999999775 324456777776644 567788999999998777777655554
No 339
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.24 E-value=1.9e-06 Score=68.96 Aligned_cols=42 Identities=36% Similarity=0.476 Sum_probs=36.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~ 43 (259)
.++|+|+|||++||++|++|++++. .++|+|+++++||-...
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 4789999999999999999999865 46779999999886655
No 340
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.21 E-value=1.8e-06 Score=73.19 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=36.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~ 41 (259)
|||+|||+||+|+.+|..|.+.|.+|+++|++...|+.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999998887544
No 341
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.21 E-value=4.3e-06 Score=67.05 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=73.7
Q ss_pred eEEEECCChHHHHHHHHHHHc--------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccc
Q 024975 4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL 69 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~--------------g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (259)
+++||||||.|.-+|.+|... .++|+++|..+.+
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i-------------------------------- 267 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI-------------------------------- 267 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------------------------------
Confidence 689999999999999999762 3588898887533
Q ss_pred eeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (259)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (259)
.++. ...+..|.++...+.+++ +..++.|..+... .+..+.+++.
T Consensus 268 -------------L~mF---------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~~-----~I~~~~~~g~ 312 (491)
T KOG2495|consen 268 -------------LNMF---------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTEK-----TIHAKTKDGE 312 (491)
T ss_pred -------------HHHH---------------HHHHHHHHHHHhhhccce--eecccEEEeecCc-----EEEEEcCCCc
Confidence 0000 066777777777788998 9999888887632 3455544566
Q ss_pred eEEEEeCEEEEccCCCCCCcc
Q 024975 150 VEEETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 150 ~~~~~ad~VIlAtG~~s~~~~ 170 (259)
.+.+.+--+|.|||....|..
T Consensus 313 ~~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 313 IEEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred eeeecceEEEecCCCCCchhh
Confidence 678999999999996555544
No 342
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.21 E-value=1.9e-06 Score=71.07 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|++||+|||+|++|+++|..|.+.|.+|+|+|++.
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 68999999999999999999999999999999863
No 343
>PLN03000 amine oxidase
Probab=98.18 E-value=2.4e-06 Score=75.53 Aligned_cols=43 Identities=33% Similarity=0.516 Sum_probs=39.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.++|+|||||++|+.+|..|.+.|++|+|+|+.+.+||.+...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 3789999999999999999999999999999999999887544
No 344
>PLN02976 amine oxidase
Probab=98.16 E-value=3.2e-06 Score=77.81 Aligned_cols=43 Identities=35% Similarity=0.604 Sum_probs=39.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~ 44 (259)
.++|+|||||++|+++|..|.+.|++|+|||+.+.+||.+...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4789999999999999999999999999999999999887654
No 345
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.4e-05 Score=65.01 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
.|||+|||||.||+-+|.+.++.|.+.+++..+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 489999999999999999999999999998876
No 346
>PRK12831 putative oxidoreductase; Provisional
Probab=98.11 E-value=7.3e-05 Score=63.05 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
++|+|||+|..|+-+|..|.+.|.+|+++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 58999999999999999999999999999875
No 347
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.11 E-value=8e-05 Score=62.83 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
.+|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999988 899998853
No 348
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.09 E-value=3.9e-06 Score=60.97 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=34.7
Q ss_pred CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceee
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~ 42 (259)
-||+|||+|-+||++|+.+.++ ..+|.|+|.+-.+||...
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 5899999999999999999864 679999999988876544
No 349
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.09 E-value=5.1e-06 Score=64.44 Aligned_cols=36 Identities=36% Similarity=0.617 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
|.+||+|||||.+|++|+.+|.++|.++.|+-++..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 789999999999999999999999999999988643
No 350
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.08 E-value=5.7e-05 Score=65.20 Aligned_cols=33 Identities=30% Similarity=0.222 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 579999999999999999999999999999864
No 351
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.05 E-value=3.3e-05 Score=62.52 Aligned_cols=40 Identities=35% Similarity=0.514 Sum_probs=36.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~ 41 (259)
.||++|||+|..||.+|.+|.+.|.+|+++|+....||..
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaa 53 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAA 53 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcce
Confidence 5899999999999999999999999999999986666553
No 352
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.01 E-value=3.5e-05 Score=61.69 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=30.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~ 35 (259)
.+||+|+||||.|+++|..|... ..++.++|..+
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 48999999999999999999864 46999999984
No 353
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.01 E-value=0.00025 Score=58.67 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=34.9
Q ss_pred CeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceee
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWI 42 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~ 42 (259)
+++=|||+|+++|++|.+|.+- |.+|+|+|+.+.+||.+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 5678999999999999999985 569999999998887653
No 354
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.98 E-value=4.4e-05 Score=64.80 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
..+|+|||+|.+|+++|..|.++|.+|+++|+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999975
No 355
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.94 E-value=0.00024 Score=60.16 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=27.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
++|+|||+|..|+-+|..+.+.|. +|++++...
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 579999999999999999999886 788766543
No 356
>PRK02106 choline dehydrogenase; Validated
Probab=97.94 E-value=1.1e-05 Score=69.81 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCC
Q 024975 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI 176 (259)
Q Consensus 108 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~ 176 (259)
|+.....+.+++ +..++.|++|..+.+....|.+.+..+....+.++.||+|.|+...|+++...|+
T Consensus 206 ~l~~a~~~~nl~--i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGI 272 (560)
T PRK02106 206 YLDPALKRPNLT--IVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGI 272 (560)
T ss_pred hhccccCCCCcE--EEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCC
Confidence 444433345677 9999999999887533345665554334455789999999999888887655554
No 357
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.93 E-value=0.00018 Score=66.16 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=67.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence 589999999999999999999995 57888775311
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
...+.+.+.+.+++ ++.++.++.+...+ ..-.|.+...++....+.+|.|+++
T Consensus 354 ------------------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~va 406 (985)
T TIGR01372 354 ------------------------SPEARAEARELGIE--VLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAVS 406 (985)
T ss_pred ------------------------hHHHHHHHHHcCCE--EEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEEc
Confidence 11233455677898 99999999887543 3223444421223357999999999
Q ss_pred cCCCCCCcc
Q 024975 162 NGHFSVPRL 170 (259)
Q Consensus 162 tG~~s~~~~ 170 (259)
.| ..|+.
T Consensus 407 ~G--~~Pnt 413 (985)
T TIGR01372 407 GG--WTPVV 413 (985)
T ss_pred CC--cCchh
Confidence 99 45543
No 358
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.92 E-value=0.00054 Score=61.47 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~ 35 (259)
++|+|||+|..|+-+|..|.+.|.+ |+++++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5899999999999999999999987 99998853
No 359
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.89 E-value=0.0012 Score=55.87 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
++++|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 679999999999999999999985 799998854
No 360
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.89 E-value=8.3e-05 Score=57.69 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=29.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHc-C-CcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE-G-HTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~-g-~~v~v~e~~~ 35 (259)
.++++|||||.+|+++|..+.+. + -+|.|+|+.+
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 46899999999999999999875 3 3899999965
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.83 E-value=0.0016 Score=57.42 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
.+|+|||+|..|+-+|..|.+.|. +|+|+++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999986 699998753
No 362
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=5e-05 Score=59.08 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=32.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~ 37 (259)
...|-|||||.+|.-+|++++++|+.|.++|-.+.-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 356899999999999999999999999999997643
No 363
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.77 E-value=3.5e-05 Score=63.12 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCC-CCCc
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF-SVPR 169 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~-s~~~ 169 (259)
..+.+.|.+.+++.|.+ ++.+++|+++...+++...+.+.++ +...+.+|.||+|+|.| |...
T Consensus 263 ~RL~~aL~~~~~~~Gg~--il~g~~V~~i~~~~~~v~~V~t~~g--~~~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGV--MLPGDRVLRAEFEGNRVTRIHTRNH--RDIPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred HHHHHHHHHHHHHCCCE--EEECcEEEEEEeeCCeEEEEEecCC--ccceEECCEEEEccCCCcCHHH
Confidence 34555567777788988 8889999999987633333554443 12479999999999988 6443
No 364
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.00016 Score=56.87 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=78.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
+++++|||||..++-+|--++-.|-++.+|-|.+.+-..
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~----------------------------------------- 227 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG----------------------------------------- 227 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-----------------------------------------
Confidence 578999999999999999999999999999887533000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA 161 (259)
+. +.+...+.+..+..+++ ++.++.++.+.+..++...+....+. ...+|.|+.|
T Consensus 228 -FD------------------~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g~~~~i~~~~~----i~~vd~llwA 282 (478)
T KOG0405|consen 228 -FD------------------EMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDGLELVITSHGT----IEDVDTLLWA 282 (478)
T ss_pred -hh------------------HHHHHHHHHHhhhccee--ecccccceeeeecCCCceEEEEeccc----cccccEEEEE
Confidence 00 56667777777888999 99999999999887555666666653 4559999999
Q ss_pred cCCCCCCccC
Q 024975 162 NGHFSVPRLA 171 (259)
Q Consensus 162 tG~~s~~~~~ 171 (259)
+| ..|+..
T Consensus 283 iG--R~Pntk 290 (478)
T KOG0405|consen 283 IG--RKPNTK 290 (478)
T ss_pred ec--CCCCcc
Confidence 99 555543
No 365
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.77 E-value=2.6e-05 Score=66.84 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC--ceEEEEeCEEEEccCCCCCCccCCCCC
Q 024975 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD--VVEEETFDAVVVCNGHFSVPRLAQVPG 175 (259)
Q Consensus 108 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~--~~~~~~ad~VIlAtG~~s~~~~~~~~g 175 (259)
|+....+.-++. +..++.|+.|..+.+....+++..+++ ......++.||+|.|....|.+....|
T Consensus 208 ~l~~a~~~~nl~--v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sg 275 (542)
T COG2303 208 YLKPALKRPNLT--LLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSG 275 (542)
T ss_pred cchhHhcCCceE--EecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcC
Confidence 344444555777 999999999999876666677665442 245568899999999877777655444
No 366
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0009 Score=53.01 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.++|+|||+|.+++-.|..|.+.+.+|+++=|.+.+.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r------------------------------------------- 179 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR------------------------------------------- 179 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-------------------------------------------
Confidence 4689999999999999999999999999998865320
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl 160 (259)
. ...+.+.+.+. ++. +++++++..+.-++ .-.|.+++..++...+.+|.|++
T Consensus 180 ---------------------a--~~~~~~~l~~~~~i~--~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 180 ---------------------A--EEILVERLKKNVKIE--VLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred ---------------------c--CHHHHHHHHhcCCeE--EEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEE
Confidence 0 12334444433 677 89999999987542 23466665435557899999999
Q ss_pred ccCCCCCCcc
Q 024975 161 CNGHFSVPRL 170 (259)
Q Consensus 161 AtG~~s~~~~ 170 (259)
+.| ..|+.
T Consensus 233 ~iG--~~p~~ 240 (305)
T COG0492 233 AIG--HLPNT 240 (305)
T ss_pred ecC--CCCch
Confidence 999 45553
No 367
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.71 E-value=0.0024 Score=51.55 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=53.3
Q ss_pred EEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCCccCC-CCCCC-----CCCCceEEcccCCCCCC
Q 024975 122 VRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-----SWPGKQMHSHNYRIPNP 194 (259)
Q Consensus 122 v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~-----~~~~~~~~~~~~~~~~~ 194 (259)
+...++|.+++...++.+.+.+... +++..++++|.||+||| ....+|. +.++. ...+......+|.....
T Consensus 295 l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~ 372 (436)
T COG3486 295 LLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG--YRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWD 372 (436)
T ss_pred eccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc--cccCCchhhhhHHHhhcccccCCeEecCceeeecC
Confidence 7778999999987655588888765 47778899999999999 5555554 33333 12333344444443322
Q ss_pred -CCCCeEEEEccC
Q 024975 195 -FQDQVVILIGHY 206 (259)
Q Consensus 195 -~~~~~v~viG~G 206 (259)
....++.|.|+.
T Consensus 373 ~~~~~~ifvqn~e 385 (436)
T COG3486 373 GPGKGRIFVQNAE 385 (436)
T ss_pred CCCcceEEEeccc
Confidence 222467777763
No 368
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.69 E-value=0.00018 Score=57.97 Aligned_cols=59 Identities=29% Similarity=0.273 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCcc
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~ 170 (259)
+-+.++..+...+.|++ ++-+..|.++.+.. ....+.+++|. .+..|.||+|+| -.|+.
T Consensus 393 eyls~wt~ekir~~GV~--V~pna~v~sv~~~~-~nl~lkL~dG~----~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVD--VRPNAKVESVRKCC-KNLVLKLSDGS----ELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCce--eccchhhhhhhhhc-cceEEEecCCC----eeeeeeEEEEec--CCCch
Confidence 45556667777888999 99999999998876 67889999987 899999999999 56664
No 369
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.68 E-value=0.0058 Score=54.10 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 579999999999999999999986 699888753
No 370
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.65 E-value=0.0013 Score=60.16 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
++|+|||||..|+-+|..+.+.|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 57999999999999999999999999999875
No 371
>PLN02785 Protein HOTHEAD
Probab=97.60 E-value=8e-05 Score=64.41 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
.||++|||+|.+|+.+|.+|.+ +.+|+|+|++..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 4899999999999999999999 689999999864
No 372
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=0.00051 Score=59.51 Aligned_cols=64 Identities=11% Similarity=-0.087 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
...+...|.+.+.+.+++ +..++.++++..+++ ....+...+ .++....+.++.||+|||.+..
T Consensus 125 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTT--FLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCE--EEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 456778888877778898 999999999987532 344455432 3455677899999999998663
No 373
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.57 E-value=0.00066 Score=57.17 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.++|+|||+|.+|+-+|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3689999999999999999999999999998853
No 374
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.49 E-value=0.011 Score=52.27 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 579999999999999999999985 799998753
No 375
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.44 E-value=0.00038 Score=60.03 Aligned_cols=100 Identities=22% Similarity=0.224 Sum_probs=74.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
..-+|||+|.-|+-+|..|.+.|.++.|++-.+.+
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--------------------------------------------- 180 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--------------------------------------------- 180 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH---------------------------------------------
Confidence 34689999999999999999999999998775422
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt 162 (259)
. ....+ ..=...|+....+.|++ ++.+.....+.... ..-.+.+++|+ .+.||.||.|+
T Consensus 181 --M---------erQLD---~~ag~lL~~~le~~Gi~--~~l~~~t~ei~g~~-~~~~vr~~DG~----~i~ad~VV~a~ 239 (793)
T COG1251 181 --M---------ERQLD---RTAGRLLRRKLEDLGIK--VLLEKNTEEIVGED-KVEGVRFADGT----EIPADLVVMAV 239 (793)
T ss_pred --H---------HHhhh---hHHHHHHHHHHHhhcce--eecccchhhhhcCc-ceeeEeecCCC----cccceeEEEec
Confidence 0 00000 22335667777788998 88877777776533 55668888887 89999999999
Q ss_pred CCCCCCcc
Q 024975 163 GHFSVPRL 170 (259)
Q Consensus 163 G~~s~~~~ 170 (259)
| -.|+.
T Consensus 240 G--IrPn~ 245 (793)
T COG1251 240 G--IRPND 245 (793)
T ss_pred c--ccccc
Confidence 9 55653
No 376
>PRK13984 putative oxidoreductase; Provisional
Probab=97.44 E-value=0.0072 Score=53.07 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC------cEEEE
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH------TVVVY 31 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~------~v~v~ 31 (259)
.+|+|||||..|+-+|..|.+.+. +|+++
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 589999999999999999998753 56665
No 377
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.42 E-value=0.0044 Score=56.57 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=28.7
Q ss_pred CeEEEECCChHHHHHHHHHHHc-C-CcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE-G-HTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~-g-~~v~v~e~~~ 35 (259)
.+|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 5899999999999999998887 4 3899998853
No 378
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.35 E-value=0.00015 Score=56.30 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG 38 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~g 38 (259)
.+|+||||||+.|++.|.+|.-+ +.+|.|+|+...++
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 48999999999999999998765 88999999987775
No 379
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.32 E-value=0.038 Score=47.19 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=28.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
++|+|||+|..|+-+|..+.+.+. +|+++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 589999999999999988888875 799998864
No 380
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.30 E-value=0.018 Score=50.09 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKG 34 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~ 34 (259)
++|+|||+|..|+-++..+.+.+ .+++|+.+.
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 57999999999999999888888 578888775
No 381
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.29 E-value=0.015 Score=53.48 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=28.8
Q ss_pred CeEEEECCChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~-g~-~v~v~e~~~ 35 (259)
.+|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 5899999999999999998886 75 799998853
No 382
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.25 E-value=0.00043 Score=49.39 Aligned_cols=32 Identities=38% Similarity=0.627 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+|+|||||..|.++|..|.++|.+|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999864
No 383
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.20 E-value=0.0086 Score=55.44 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=27.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCc-EEEEeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKG 34 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~ 34 (259)
++|+|||||..|+-+|..+.+.|.+ |+++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 6899999999999999999999974 7777653
No 384
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.19 E-value=0.0004 Score=59.06 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=33.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV 37 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~ 37 (259)
.||.+|||||-+|+.+|.+|.+. ..+|+|+|++..+
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 58999999999999999999996 6899999998665
No 385
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.08 E-value=0.0011 Score=54.64 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=47.0
Q ss_pred CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC-----cccccC-----------------CCCCCCceE--eeeee
Q 024975 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DETHEK-----------------QPGYDNMWL--HSMVR 251 (259)
Q Consensus 196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~-----~~~~~~-----------------~~~~~~~~~--~~~v~ 251 (259)
-.++++|||||.+|+..|.+|++.|-+|+++.+.+. ..+-+. +..-+++.+ +++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 357899999999999999999999999999999991 111111 222356665 48899
Q ss_pred EEeecc
Q 024975 252 TKKCSR 257 (259)
Q Consensus 252 ~~~~~~ 257 (259)
+++++-
T Consensus 203 ev~G~v 208 (622)
T COG1148 203 EVSGSV 208 (622)
T ss_pred eecccc
Confidence 888764
No 386
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00093 Score=50.61 Aligned_cols=35 Identities=40% Similarity=0.673 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~ 37 (259)
++++|||+|..|.++|..|.+.|.+|+++|+++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 47999999999999999999999999999998543
No 387
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.03 E-value=0.011 Score=49.29 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
.++.+.+.+.+.+.|++ ++.+++|+++...+ +........ +++...+.+|.||+|+|.+.
T Consensus 259 ~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~-~~V~~v~~~-~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGR--IMPGDEVLGAEFEG-GRVTAVWTR-NHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CEEEEEEee-CCceEEEECCEEEEeCCCcc
Confidence 45777788888888998 99999999998775 433332221 23345789999999999653
No 388
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.02 E-value=0.0024 Score=52.67 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~ 169 (259)
..+...|.+.+.+ |++ ++.++.|++++.++ +.|.|.+.++. .+.+|.||+|+|.|+...
T Consensus 135 ~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLT--LHFNTEITSLERDG-EGWQLLDANGE----VIAASVVVLANGAQAGQL 193 (381)
T ss_pred HHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC-CeEEEEeCCCC----EEEcCEEEEcCCcccccc
Confidence 6777888887777 888 99999999998765 66888877654 589999999999876543
No 389
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.99 E-value=0.0013 Score=47.94 Aligned_cols=32 Identities=38% Similarity=0.610 Sum_probs=28.4
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999975
No 390
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.99 E-value=0.0081 Score=48.48 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~ 169 (259)
..+...+.+.+.+.|++ ++.+++|++++..++..+.|.+.++ .+.||.||+|+|.++...
T Consensus 137 ~~l~~~l~~~~~~~g~~--~~~~~~v~~i~~~~~~~~~v~~~~g-----~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 137 RALLKALEKALEKLGVE--IIEHTEVQHIEIRGEKVTAIVTPSG-----DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred HHHHHHHHHHHHHcCCE--EEccceEEEEEeeCCEEEEEEcCCC-----EEECCEEEEcCChhhhhc
Confidence 78888888888889999 9999999999986522334555442 689999999999876543
No 391
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.95 E-value=0.004 Score=51.38 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+|++|||+|++|+++|..|.+.|.+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999974
No 392
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.93 E-value=0.0012 Score=48.40 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=27.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
++|+|||.|..|+.+|..|++.|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 479999999999999999999999999999975
No 393
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.91 E-value=0.0011 Score=39.80 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=27.2
Q ss_pred EEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 202 LIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 202 viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
|||+|.+|+-+|..|.+.+.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999999
No 394
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.90 E-value=0.0013 Score=55.57 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=31.2
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~ 37 (259)
+|+|||+|++|+++|..|.++|.+|+++|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6899999999999999999999999999987543
No 395
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.88 E-value=0.0014 Score=43.10 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..+++|+|||+|..|..-+..|.+.|.+|+++++..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 467999999999999999999999999999999984
No 396
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.87 E-value=0.00097 Score=55.62 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=37.4
Q ss_pred HHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975 112 FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (259)
Q Consensus 112 ~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s 166 (259)
.....+.+ ++++++|++|+..+ +.+.+.+.++. .+.||+||+|+....
T Consensus 218 ~~~~~g~~--i~l~~~V~~I~~~~-~~v~v~~~~g~----~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 218 AAEELGGE--IRLNTPVTRIERED-GGVTVTTEDGE----TIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHGGG--EESSEEEEEEEEES-SEEEEEETTSS----EEEESEEEE-S-HHH
T ss_pred HHhhcCce--eecCCcceeccccc-cccccccccce----EEecceeeecCchhh
Confidence 33334566 99999999999987 78889998876 899999999997533
No 397
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.83 E-value=0.002 Score=52.25 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|+.+|+|||+|..|...|..|.+.|.+|+++++.+
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 67899999999999999999999999999999864
No 398
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.77 E-value=0.0019 Score=53.53 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=33.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
.|||+|+|.|..-..+|..|++.|.+|+-+|+++.=||.|..
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 589999999999999999999999999999999999987644
No 399
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0067 Score=47.91 Aligned_cols=99 Identities=19% Similarity=0.255 Sum_probs=76.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
-+-+|||||..+|.||-.|.-.|.+++|.=|+--+ ..
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L-------------------------------------------rG 235 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL-------------------------------------------RG 235 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec-------------------------------------------cc
Confidence 35789999999999999999999999988774210 00
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEc
Q 024975 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVC 161 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlA 161 (259)
+. .++.+.+.+...+.|+. +.-++..+.+++.+++...|..++.. ++...-.+|.|++|
T Consensus 236 FD------------------qdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~A 295 (503)
T KOG4716|consen 236 FD------------------QDMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWA 295 (503)
T ss_pred cc------------------HHHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhh
Confidence 11 77778888888889998 88888888888877677666666543 44445689999999
Q ss_pred cCC
Q 024975 162 NGH 164 (259)
Q Consensus 162 tG~ 164 (259)
.|.
T Consensus 296 iGR 298 (503)
T KOG4716|consen 296 IGR 298 (503)
T ss_pred hcc
Confidence 994
No 400
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.72 E-value=0.0024 Score=50.95 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
.+|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999999999999999999999999999753
No 401
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.70 E-value=0.0033 Score=44.43 Aligned_cols=30 Identities=33% Similarity=0.620 Sum_probs=28.8
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
|+|+|+|..|...|.+|.+.|.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 789999999999999999999999999986
No 402
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.69 E-value=0.0034 Score=50.02 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|.++|+|||+|..|...|..|.+.|.+|+++++..
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 45789999999999999999999999999999963
No 403
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.67 E-value=0.0021 Score=42.21 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
.++|+|||+|..|..-+..|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 468999999999999999999999999999986
No 404
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.59 E-value=0.0047 Score=46.08 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.++|+|||||..|...+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3689999999999999999999999999998853
No 405
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.58 E-value=0.002 Score=48.06 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=35.9
Q ss_pred CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcccc
Q 024975 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETH 235 (259)
Q Consensus 195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~ 235 (259)
..+++|+|||+|.+|.--+..|.+.|..|+++++...+++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~ 47 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELT 47 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHH
Confidence 45789999999999999999999999999999987755443
No 406
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.57 E-value=0.0052 Score=44.36 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=29.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999864
No 407
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.55 E-value=0.0055 Score=43.60 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
..+|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 368999999999999999999999999999653
No 408
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.49 E-value=0.0043 Score=49.02 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 579999999999999999999999999999974
No 409
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.005 Score=52.01 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.++++|+|+|..|+.+|..|++.|.+|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999974
No 410
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.43 E-value=0.021 Score=49.18 Aligned_cols=64 Identities=16% Similarity=0.004 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (259)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~ 168 (259)
..+...+...+.+.|++ +..+++|+++...++..+.|.+.+. +++...+.+++||+|+|.|+..
T Consensus 128 ~~l~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 128 FRLVAANVLDAQEHGAR--IFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 66777777888888999 9999999999987534445666432 2333579999999999987643
No 411
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.43 E-value=0.0048 Score=48.64 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
.+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999999753
No 412
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.43 E-value=0.0062 Score=48.25 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|.-|...|..|++.|.+|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 689999999999999999999999999999864
No 413
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.42 E-value=0.0054 Score=48.48 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|..|...|..|++.|.+|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 689999999999999999999999999999864
No 414
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.39 E-value=0.007 Score=50.88 Aligned_cols=35 Identities=23% Similarity=0.081 Sum_probs=31.3
Q ss_pred CCCeEEEEccCcCHHHHHHHHh-cccCeEEEEecCC
Q 024975 196 QDQVVILIGHYASGLDIKRDLA-GFAKEVHIASRSV 230 (259)
Q Consensus 196 ~~~~v~viG~G~~a~e~a~~l~-~~~~~v~~~~r~~ 230 (259)
..++|+|||+|++|+.+|..|+ +.+.+|+++.|.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4589999999999999999875 5688999999999
No 415
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.39 E-value=0.0072 Score=43.38 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=29.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|.+|.+||.|..|...|.+|.+.|++|.++|+.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 5799999999999999999999999999999874
No 416
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.39 E-value=0.0075 Score=44.88 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
.++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999874
No 417
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.39 E-value=0.01 Score=41.08 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~ 35 (259)
..+++|||+|-+|-+++..|.+.|.+ ++|+.|+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 46899999999999999999999986 99998863
No 418
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.36 E-value=0.0078 Score=48.20 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+.+|+|||+|..|...|..|.+.|.+|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3589999999999999999999999999999964
No 419
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.35 E-value=0.006 Score=48.72 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|..|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999975
No 420
>PRK04148 hypothetical protein; Provisional
Probab=96.35 E-value=0.0048 Score=42.22 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
.++++||.| .|..+|..|.+.|.+|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 899999999999999999999864
No 421
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.27 E-value=0.0065 Score=48.09 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|..|...|..|++.|.+|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999975
No 422
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.26 E-value=0.0047 Score=51.01 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=31.1
Q ss_pred CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
++|+|||+|+.|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999876
No 423
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.26 E-value=0.004 Score=44.30 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcc
Q 024975 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE 233 (259)
Q Consensus 194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~ 233 (259)
+..+++|+|||+|..|..-+..|.+.+.+|+++++.-.++
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~ 49 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKE 49 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHH
Confidence 4568999999999999999999999999999996444333
No 424
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.25 E-value=0.0071 Score=47.66 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|..|...|..|++.|.+|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 689999999999999999999999999999864
No 425
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.24 E-value=0.011 Score=41.02 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=30.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~ 34 (259)
..+|+|||+|.-|..+|..|.+.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 3689999999999999999999998 79999996
No 426
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.17 E-value=0.005 Score=51.02 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=30.2
Q ss_pred eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+|+|||+|++|+++|..|++.|.+|+++.+++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 58999999999999999999999999999766
No 427
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.15 E-value=0.0078 Score=50.11 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
+++|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 37899999999999999999999999999998754
No 428
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.14 E-value=0.01 Score=47.75 Aligned_cols=34 Identities=32% Similarity=0.603 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|.+|.|||+|..|...|..|.+.|.+|.++++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3589999999999999999999999999999964
No 429
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.10 E-value=0.0089 Score=50.70 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|+|+|+.|+.++..+...|.+|+++|.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 589999999999999999999999999999874
No 430
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.10 E-value=0.01 Score=47.31 Aligned_cols=32 Identities=34% Similarity=0.636 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+|+|||+|..|..+|..|.+.|.+|+++++.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999853
No 431
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.09 E-value=0.011 Score=48.43 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|+|||+|..|+.++..|.+.|.+|+++|+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 579999999999999999999999999999863
No 432
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.09 E-value=0.01 Score=47.30 Aligned_cols=30 Identities=40% Similarity=0.650 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEee
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~ 33 (259)
+|+|||+|..|..+|..|.+.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 433
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.07 E-value=0.0054 Score=45.66 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=34.7
Q ss_pred CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcc
Q 024975 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE 233 (259)
Q Consensus 194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~ 233 (259)
+..+++|+|||+|..|.-.+..|.+.+.+|+++++...++
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~ 46 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTEN 46 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHH
Confidence 3467999999999999999999999999999998765444
No 434
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.03 E-value=0.013 Score=43.59 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~ 34 (259)
..+|+|||+|--|..+|..|.+.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3679999999999999999999999 69999996
No 435
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.03 E-value=0.014 Score=46.54 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ 36 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~ 36 (259)
|.+|+|||+|..|..+|..|...+. +++++|.++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 5799999999999999999999875 9999999654
No 436
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.02 E-value=0.018 Score=40.21 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=29.8
Q ss_pred CeEEEECC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975 3 RHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~-G~~Gl~~a~~L~~~g~--~v~v~e~~~ 35 (259)
.+|+|||+ |..|.++|+.|...++ ++.++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999875 799999974
No 437
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.02 E-value=0.013 Score=46.84 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQ 36 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~ 36 (259)
+|.|||+|..|.++|+.|.+.| .++.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 7999999999999999999998 48999999753
No 438
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.02 E-value=0.015 Score=38.93 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|+|+|.|..|..++..|.+.+.+++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999877999999985
No 439
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.00 E-value=0.012 Score=48.53 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
..|+|+|+|+.|+.+|..|...|.+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 579999999999999999999999999999864
No 440
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.98 E-value=0.013 Score=46.94 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
..+|.|||+|..|.++|..|.+.|++|+++|+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999999864
No 441
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.95 E-value=0.016 Score=41.63 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCeEEEECCCh-HHHHHHHHHHHcCCcEEEEeeC
Q 024975 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
.++|+|||+|- .|..+|..|.+.|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 37899999996 6999999999999999999875
No 442
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.93 E-value=0.011 Score=50.37 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..++|+|||+|++|+-+|+.|.+.|-+|++++-++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 45789999999999999999999999999999998
No 443
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.93 E-value=0.0091 Score=50.61 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCeEEEEccCcCHHHHHHHHhc--ccCeEEEEecCC
Q 024975 196 QDQVVILIGHYASGLDIKRDLAG--FAKEVHIASRSV 230 (259)
Q Consensus 196 ~~~~v~viG~G~~a~e~a~~l~~--~~~~v~~~~r~~ 230 (259)
.+++|+|||+|+.|+.+|..|++ .+.+|+++.|.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 35789999999999999999986 688999999999
No 444
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.12 Score=41.30 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=68.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+||+|||||-+|+-+|.-|+--=..|+++|=.+.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence 479999999999999999998765688888765322
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEE
Q 024975 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VI 159 (259)
+--+.|++.+..+ +++ +..+..-+.+.-+.+....+...+. +++...+.-+-|+
T Consensus 390 ----------------------kAD~VLq~kl~sl~Nv~--ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvF 445 (520)
T COG3634 390 ----------------------KADAVLQDKLRSLPNVT--IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVF 445 (520)
T ss_pred ----------------------hhHHHHHHHHhcCCCcE--EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeE
Confidence 1112334444333 666 7777777777655323333554443 3666777778888
Q ss_pred EccCCCCCCccCCCCCC
Q 024975 160 VCNGHFSVPRLAQVPGI 176 (259)
Q Consensus 160 lAtG~~s~~~~~~~~g~ 176 (259)
+-.| -.|+...+.|.
T Consensus 446 VqIG--L~PNT~WLkg~ 460 (520)
T COG3634 446 VQIG--LLPNTEWLKGA 460 (520)
T ss_pred EEEe--cccChhHhhch
Confidence 8888 45555444443
No 445
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.87 E-value=0.012 Score=48.85 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~ 37 (259)
+++|+|+|.|-+|+++|..|.+.|.+|+++|..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 478999999999999999999999999999976554
No 446
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.83 E-value=0.013 Score=47.29 Aligned_cols=33 Identities=42% Similarity=0.621 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
++|.|||.|..||..|..|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999974
No 447
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.83 E-value=0.015 Score=47.34 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~ 35 (259)
|.+|+|||+|-.|..+|..|++.+ .+|++.||+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 579999999999999999999998 7999999983
No 448
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.82 E-value=0.017 Score=46.62 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+.+|.|||+|.-|...|..|.+.|.+|+++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999964
No 449
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.78 E-value=0.0099 Score=51.08 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=28.4
Q ss_pred CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
|+|+|||+|.+|+-.+..|.+.|-++++++|++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 789999999999999999999999999999999
No 450
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.78 E-value=0.0086 Score=44.99 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=36.5
Q ss_pred CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCccccc
Q 024975 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHE 236 (259)
Q Consensus 195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~ 236 (259)
..+++|+|||||..|..=+..|++.+..||+++..-.+++.+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~ 64 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD 64 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH
Confidence 457899999999999999999999999999999887666543
No 451
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.77 E-value=0.019 Score=45.63 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|.|||+|.-|...|..|++.|.+|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999874
No 452
>PRK07236 hypothetical protein; Provisional
Probab=95.77 E-value=0.012 Score=48.58 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=32.2
Q ss_pred CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..+|+|||+|++|.-+|..|.+.|.+|++++|.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4789999999999999999999999999999987
No 453
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.76 E-value=0.018 Score=46.37 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+|.|||+|.-|.+.|..|.+.|.+|.+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999853
No 454
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.72 E-value=0.017 Score=45.87 Aligned_cols=35 Identities=34% Similarity=0.610 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|+.+|.|||.|..|...|..|.+.|.+|+++|+++
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 56789999999999999999999999999999864
No 455
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.70 E-value=0.015 Score=48.49 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=30.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999999754
No 456
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.69 E-value=0.018 Score=49.23 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
++|.|||+|.-|...|..|.+.|++|+++|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999964
No 457
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.69 E-value=0.023 Score=45.44 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.++|.|||+|.-|.++|..|.+.|++|.+++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999864
No 458
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.69 E-value=0.022 Score=44.18 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3689999999999999999999995 899999864
No 459
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.66 E-value=0.019 Score=48.67 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
++|+|+|.|.+|+++|..|.+.|.+|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 579999999999999999999999999999764
No 460
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.65 E-value=0.014 Score=48.72 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=31.1
Q ss_pred CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
.+|+|||+|.+|.-+|.+|++.|.+|+++.|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999986
No 461
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.65 E-value=0.017 Score=39.96 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
++|+|+|+.+.+++..+...|++|+++|..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999753
No 462
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.65 E-value=0.019 Score=48.57 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~ 35 (259)
|++|+|||+|..|+.+|..|++.| .+|+.+|.++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 467999999999999999999984 7899999864
No 463
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.64 E-value=0.092 Score=45.77 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (259)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~ 167 (259)
+..+...|.+.+.+.+++ +..++.++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus 118 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTS--FFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred hHHHHHHHHHHHHhCCCE--EEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 356788888888888998 999999999987543334444422 3355667899999999998654
No 464
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=95.63 E-value=0.013 Score=43.42 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=29.8
Q ss_pred eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+|+|||+|+.|+.+|..|.+.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999997766
No 465
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.63 E-value=0.015 Score=47.21 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=29.0
Q ss_pred eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+|+|||+|++|+=+|..|.+.|.+|+++.|++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 59999999999999999999999999999998
No 466
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.62 E-value=0.026 Score=44.99 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQV 37 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~ 37 (259)
.+|.|||+|..|..+|+.|+..|. +|+++|.....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l 37 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI 37 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh
Confidence 579999999999999999999876 89999996543
No 467
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.60 E-value=0.02 Score=44.78 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcC---CcEEEEeeCC
Q 024975 1 MFRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGE 35 (259)
Q Consensus 1 ~~~~v~IIG~G~~Gl~~a~~L~~~g---~~v~v~e~~~ 35 (259)
||.+|.|||+|.-|.++|..|.+.+ .++.++++++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 6789999999999999999999988 6889998864
No 468
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.59 E-value=0.028 Score=45.08 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ 36 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~ 36 (259)
.+|+|||+|..|.++|+.|+..++ +++++|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999986 8999998765
No 469
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.57 E-value=0.027 Score=42.77 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCc---EEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHT---VVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~---v~v~e~~~ 35 (259)
.+++|+|+|-+|..+|..|.+.|.+ +.++|+..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 5799999999999999999999975 99999973
No 470
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.56 E-value=0.03 Score=41.66 Aligned_cols=33 Identities=36% Similarity=0.586 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+.++|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 579999999999999999999999999998863
No 471
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.53 E-value=0.025 Score=45.73 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
..+|+|||+|-.|..+|..|.+.|. +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3679999999999999999999998 899999963
No 472
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.50 E-value=0.015 Score=48.64 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=32.7
Q ss_pred CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
.++++|||+|.+|+-.|++|.+.|.+++++.|++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 5789999999999999999999999999999999
No 473
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.023 Score=48.22 Aligned_cols=33 Identities=21% Similarity=0.035 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
.++|+|+|.|-+|.++|..|.+.|.+|++.|.+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 368999999999999999999999999999964
No 474
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.49 E-value=0.03 Score=44.37 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
..+++|||.|..|.+++..|.+.|.+|+++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3689999999999999999999999999999974
No 475
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.43 E-value=0.027 Score=48.14 Aligned_cols=32 Identities=34% Similarity=0.372 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~ 34 (259)
.+|+|+|.|.+|++++..|.+.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999964
No 476
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.42 E-value=0.028 Score=44.29 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
++++|||+|-+|-++++.|.+.|. +++|++++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999997 799999864
No 477
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.39 E-value=0.02 Score=47.43 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=32.1
Q ss_pred CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
+.+|+|||+|.+|.-+|..|.+.|.+|++++|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4679999999999999999999999999999987
No 478
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.37 E-value=0.033 Score=38.98 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
+|+|||+|-.|..+|..|.+.|. +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999863
No 479
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.37 E-value=0.03 Score=46.19 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
..|+|+|.|+.|..+|..|...|.+|+++|.++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 579999999999999999999999999998865
No 480
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.34 E-value=0.048 Score=34.39 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=29.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHc-CCcEEEEee
Q 024975 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEK 33 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~ 33 (259)
..+++|+|+|..|..++..|.+. +.++.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999988
No 481
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.024 Score=42.15 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=33.6
Q ss_pred CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
++....|+|+|+|++|+-.|..|++.+.+|.++.|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3445679999999999999999999999999999998
No 482
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.33 E-value=0.035 Score=41.37 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~ 34 (259)
..+|+|||+|-.|..+|..|.+.|. +++++|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3679999999999999999999998 89999996
No 483
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.31 E-value=0.037 Score=46.75 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
.++++|+|.|.+|+++|..|.++|.+|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799999999999999999999999999998654
No 484
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.31 E-value=0.037 Score=42.62 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~ 34 (259)
..+|+|||+|.-|..+|..|.+.|+ +++|+|..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3689999999999999999999997 89999986
No 485
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.31 E-value=0.035 Score=42.55 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~ 35 (259)
..+|+|||+|-.|..+|..|.+.|. +++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 3589999999999999999999997 899999863
No 486
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.31 E-value=0.035 Score=44.31 Aligned_cols=35 Identities=31% Similarity=0.558 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCc
Q 024975 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQV 37 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~ 37 (259)
.+|+|||+|..|.++|+.|...| .+++++|++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~ 37 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK 37 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 37999999999999999999998 489999997543
No 487
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.27 E-value=0.025 Score=51.57 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=32.9
Q ss_pred CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 457899999999999999999999999999999853
No 488
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.26 E-value=0.039 Score=41.46 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~ 34 (259)
..+|+|||+|-.|..+|..|.+.|. +++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3679999999999999999999998 59999996
No 489
>PRK06847 hypothetical protein; Provisional
Probab=95.26 E-value=0.023 Score=46.66 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
..+|+|||+|.+|+-+|..|.+.|.+|++++|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3679999999999999999999999999999987
No 490
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.24 E-value=0.037 Score=42.14 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~ 34 (259)
..+|+|||+|-.|..+|..|.+.|. +++|+|.+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3689999999999999999999998 89999886
No 491
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.24 E-value=0.043 Score=43.94 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQ 36 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~ 36 (259)
.+|+|||+|..|.++|+.|...++ ++.++|.+..
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 689999999999999999999887 8999998654
No 492
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.23 E-value=0.028 Score=48.02 Aligned_cols=34 Identities=38% Similarity=0.582 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~ 36 (259)
.+|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998744
No 493
>PRK08017 oxidoreductase; Provisional
Probab=95.22 E-value=0.041 Score=42.47 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=31.5
Q ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 1 ~~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
|++.++|.|| |..|..+|..|.++|.+|++++++.
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5567999999 9999999999999999999998864
No 494
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.22 E-value=0.038 Score=44.70 Aligned_cols=33 Identities=36% Similarity=0.598 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (259)
Q Consensus 2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~ 34 (259)
..+|+|||+|--|..+|..|.+.|. +++++|.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999999999998 89999995
No 495
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.20 E-value=0.084 Score=45.23 Aligned_cols=41 Identities=39% Similarity=0.510 Sum_probs=38.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~ 43 (259)
+||+|||||++||++|..|+++|.+|+|+||+..+||.+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 69999999999999999999999999999999999877654
No 496
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.19 E-value=0.038 Score=46.91 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+++|+|+|+.|++++..+...|.+|+++|.++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999874
No 497
>PRK05868 hypothetical protein; Validated
Probab=95.18 E-value=0.022 Score=46.80 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=31.3
Q ss_pred CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (259)
Q Consensus 198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~ 230 (259)
++|+|+|+|..|+-+|..|.+.|.+|+++++++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999988
No 498
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.17 E-value=0.035 Score=43.72 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+|.|||.|..|.++|..|.+.|.+|.++|+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 499
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.17 E-value=0.033 Score=44.21 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
.+|.|||.|.-|...|..|.+.|.+|+++|+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 589999999999999999999999999999874
No 500
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.036 Score=46.82 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (259)
Q Consensus 3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~ 35 (259)
+.++|+|+|..|+++|..|.+.|.+|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999754
Done!