Query 024977
Match_columns 259
No_of_seqs 237 out of 2140
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 6.6E-29 1.4E-33 200.6 16.5 150 68-255 2-154 (157)
2 cd02970 PRX_like2 Peroxiredoxi 99.9 1.6E-26 3.4E-31 185.5 13.8 146 75-238 1-149 (149)
3 PRK13191 putative peroxiredoxi 99.9 1.5E-24 3.4E-29 185.8 16.0 145 68-255 5-159 (215)
4 cd03018 PRX_AhpE_like Peroxire 99.9 2E-24 4.3E-29 173.9 15.2 142 70-252 1-149 (149)
5 TIGR03137 AhpC peroxiredoxin. 99.9 1.8E-24 3.9E-29 181.7 15.3 143 71-256 3-155 (187)
6 PRK00522 tpx lipid hydroperoxi 99.9 3.5E-24 7.5E-29 176.8 16.6 148 67-255 15-167 (167)
7 PRK13190 putative peroxiredoxi 99.9 2E-24 4.3E-29 183.5 15.2 143 69-255 1-152 (202)
8 PRK13599 putative peroxiredoxi 99.9 2.7E-24 5.9E-29 184.2 16.1 145 70-256 2-155 (215)
9 PRK10382 alkyl hydroperoxide r 99.9 4.2E-24 9.2E-29 179.3 15.6 143 70-255 2-154 (187)
10 cd03014 PRX_Atyp2cys Peroxired 99.9 7.6E-24 1.7E-28 169.7 15.1 138 71-252 1-143 (143)
11 PTZ00137 2-Cys peroxiredoxin; 99.9 9.6E-24 2.1E-28 184.9 15.9 145 67-255 65-223 (261)
12 cd03015 PRX_Typ2cys Peroxiredo 99.9 1.6E-23 3.6E-28 173.5 15.2 142 72-256 1-156 (173)
13 cd03016 PRX_1cys Peroxiredoxin 99.9 1.7E-23 3.7E-28 177.9 15.4 144 72-256 1-153 (203)
14 PRK15000 peroxidase; Provision 99.9 5.6E-23 1.2E-27 174.4 15.7 142 71-255 3-160 (200)
15 PRK13189 peroxiredoxin; Provis 99.9 6.9E-23 1.5E-27 176.5 16.0 144 69-255 8-161 (222)
16 cd03013 PRX5_like Peroxiredoxi 99.9 3.5E-23 7.6E-28 168.9 13.4 133 72-241 1-143 (155)
17 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 9.4E-23 2E-27 158.7 14.1 121 72-234 1-124 (124)
18 PRK09437 bcp thioredoxin-depen 99.9 2.7E-22 5.9E-27 162.8 16.1 149 69-255 3-154 (154)
19 PF08534 Redoxin: Redoxin; In 99.9 4.1E-22 9E-27 160.0 15.2 141 71-250 1-146 (146)
20 PTZ00253 tryparedoxin peroxida 99.9 7.7E-22 1.7E-26 167.3 15.9 145 69-256 5-163 (199)
21 cd03017 PRX_BCP Peroxiredoxin 99.9 1.5E-21 3.3E-26 155.3 14.3 136 74-250 1-139 (140)
22 KOG4498 Uncharacterized conser 99.9 4.2E-22 9.2E-27 162.7 11.2 161 82-256 35-197 (197)
23 cd02971 PRX_family Peroxiredox 99.9 1.8E-21 3.8E-26 154.8 14.5 135 75-249 1-139 (140)
24 COG0450 AhpC Peroxiredoxin [Po 99.9 1.8E-21 4E-26 160.8 14.2 144 69-255 2-159 (194)
25 KOG0855 Alkyl hydroperoxide re 99.8 3E-19 6.4E-24 143.3 14.0 155 63-255 56-210 (211)
26 cd02969 PRX_like1 Peroxiredoxi 99.8 1.4E-18 3E-23 143.6 14.3 135 73-255 1-150 (171)
27 PTZ00056 glutathione peroxidas 99.8 2.1E-18 4.5E-23 146.3 13.1 87 71-164 14-110 (199)
28 PTZ00256 glutathione peroxidas 99.8 3.9E-18 8.5E-23 142.7 14.2 86 73-164 17-113 (183)
29 PLN02399 phospholipid hydroper 99.8 6.6E-18 1.4E-22 146.3 13.3 133 70-238 73-220 (236)
30 TIGR02661 MauD methylamine deh 99.8 1.5E-17 3.2E-22 140.0 14.7 135 68-256 44-181 (189)
31 PLN02412 probable glutathione 99.8 1E-17 2.3E-22 138.2 12.5 130 74-239 7-151 (167)
32 cd00340 GSH_Peroxidase Glutath 99.8 2.9E-18 6.2E-23 139.2 8.9 127 76-239 2-143 (152)
33 PRK03147 thiol-disulfide oxido 99.7 5.2E-17 1.1E-21 133.7 14.9 124 67-239 32-159 (173)
34 PRK15412 thiol:disulfide inter 99.7 2.2E-17 4.8E-22 138.4 11.9 132 69-253 38-175 (185)
35 PF13911 AhpC-TSA_2: AhpC/TSA 99.7 3.5E-17 7.7E-22 126.7 12.0 111 122-239 2-115 (115)
36 TIGR02540 gpx7 putative glutat 99.7 3.4E-17 7.4E-22 132.9 12.5 82 77-165 3-95 (153)
37 cd03012 TlpA_like_DipZ_like Tl 99.7 2.6E-17 5.7E-22 129.2 10.9 104 86-238 13-125 (126)
38 cd02968 SCO SCO (an acronym fo 99.7 7.2E-17 1.6E-21 128.6 11.8 127 75-236 1-141 (142)
39 TIGR00385 dsbE periplasmic pro 99.7 1.9E-16 4E-21 131.3 14.0 119 69-238 33-157 (173)
40 KOG0854 Alkyl hydroperoxide re 99.7 4.2E-16 9.1E-21 126.3 13.1 152 67-255 3-166 (224)
41 cd03010 TlpA_like_DsbE TlpA-li 99.7 7E-16 1.5E-20 121.0 12.7 115 74-239 1-121 (127)
42 cd02967 mauD Methylamine utili 99.7 1.4E-15 3E-20 116.7 12.5 107 77-235 1-112 (114)
43 KOG0852 Alkyl hydroperoxide re 99.6 3.3E-15 7.2E-20 121.0 12.3 144 69-255 3-159 (196)
44 PRK14018 trifunctional thiored 99.6 2.4E-14 5.2E-19 136.3 15.7 119 70-239 32-160 (521)
45 cd02966 TlpA_like_family TlpA- 99.6 3E-14 6.5E-19 107.5 11.9 91 78-175 1-95 (116)
46 PRK10606 btuE putative glutath 99.6 4.9E-14 1.1E-18 117.9 11.9 86 74-167 3-101 (183)
47 TIGR01626 ytfJ_HI0045 conserve 99.5 2.1E-14 4.5E-19 119.8 9.4 141 62-254 15-180 (184)
48 COG2077 Tpx Peroxiredoxin [Pos 99.5 9.2E-14 2E-18 110.3 12.2 143 66-246 14-158 (158)
49 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 1.5E-13 3.4E-18 106.7 11.6 87 77-175 1-91 (123)
50 cd03008 TryX_like_RdCVF Trypar 99.5 1.6E-13 3.4E-18 110.7 10.8 85 87-175 16-110 (146)
51 cd03009 TryX_like_TryX_NRX Try 99.5 5E-13 1.1E-17 105.3 10.0 90 81-176 3-98 (131)
52 PLN02919 haloacid dehalogenase 99.5 4.8E-13 1E-17 137.8 12.6 135 68-253 389-535 (1057)
53 KOG0541 Alkyl hydroperoxide re 99.4 9.6E-13 2.1E-17 104.9 9.0 153 66-251 5-169 (171)
54 PRK13728 conjugal transfer pro 99.4 2.5E-12 5.3E-17 106.9 11.7 105 71-238 50-157 (181)
55 cd02964 TryX_like_family Trypa 99.4 5.3E-12 1.1E-16 99.8 10.3 64 87-154 8-74 (132)
56 COG0678 AHP1 Peroxiredoxin [Po 99.4 1.1E-11 2.3E-16 98.4 11.2 150 69-252 2-164 (165)
57 PF13905 Thioredoxin_8: Thiore 99.1 7.9E-10 1.7E-14 81.9 11.1 57 101-157 2-60 (95)
58 PF02630 SCO1-SenC: SCO1/SenC; 98.9 1E-08 2.2E-13 85.1 11.5 133 72-236 28-172 (174)
59 TIGR02738 TrbB type-F conjugat 98.9 6.3E-09 1.4E-13 84.6 9.0 48 86-144 44-91 (153)
60 COG1999 Uncharacterized protei 98.7 5E-07 1.1E-11 77.1 14.9 141 78-255 49-202 (207)
61 TIGR02740 TraF-like TraF-like 98.5 4.4E-07 9.4E-12 80.6 7.6 72 86-175 156-227 (271)
62 COG0386 BtuE Glutathione perox 98.5 2.4E-06 5.3E-11 68.5 10.9 77 76-157 5-92 (162)
63 cd02950 TxlA TRX-like protein 98.4 2.6E-07 5.6E-12 74.2 4.7 85 80-169 2-89 (142)
64 KOG2501 Thioredoxin, nucleored 98.3 1.1E-06 2.4E-11 71.0 5.7 104 79-188 15-126 (157)
65 cd02985 TRX_CDSP32 TRX family, 98.3 2.9E-06 6.3E-11 64.1 7.5 42 101-144 16-57 (103)
66 PF00255 GSHPx: Glutathione pe 98.2 8.1E-06 1.7E-10 62.5 8.9 75 78-157 3-88 (108)
67 cd02948 TRX_NDPK TRX domain, T 98.2 4.1E-06 8.9E-11 63.1 6.0 43 101-143 18-60 (102)
68 cd02951 SoxW SoxW family; SoxW 98.2 1.3E-05 2.8E-10 62.4 8.7 43 101-144 15-60 (125)
69 PRK09381 trxA thioredoxin; Pro 98.1 7.5E-05 1.6E-09 56.5 11.1 41 101-142 22-62 (109)
70 cd02962 TMX2 TMX2 family; comp 98.1 5.8E-05 1.3E-09 61.3 10.7 43 101-143 48-90 (152)
71 cd02999 PDI_a_ERp44_like PDIa 98.0 1.2E-05 2.5E-10 60.6 6.0 41 100-142 18-58 (100)
72 KOG1651 Glutathione peroxidase 98.0 0.00017 3.7E-09 58.7 11.8 79 75-157 13-102 (171)
73 cd02954 DIM1 Dim1 family; Dim1 97.9 0.00018 3.8E-09 55.6 10.7 41 101-142 15-55 (114)
74 cd02963 TRX_DnaJ TRX domain, D 97.9 4.1E-05 8.9E-10 58.6 7.0 44 101-144 25-68 (111)
75 cd03002 PDI_a_MPD1_like PDI fa 97.9 0.00015 3.2E-09 54.7 9.6 42 101-143 19-60 (109)
76 PF05988 DUF899: Bacterial pro 97.8 0.00054 1.2E-08 58.1 12.7 98 73-175 43-147 (211)
77 PF00837 T4_deiodinase: Iodoth 97.8 0.00014 3.1E-09 62.7 9.4 73 67-142 70-143 (237)
78 PF13098 Thioredoxin_2: Thiore 97.8 9.5E-05 2.1E-09 56.0 7.5 44 101-145 6-52 (112)
79 cd03000 PDI_a_TMX3 PDIa family 97.8 5.7E-05 1.2E-09 56.8 6.1 43 101-143 16-60 (104)
80 cd02993 PDI_a_APS_reductase PD 97.8 6.1E-05 1.3E-09 57.3 5.7 43 101-143 22-64 (109)
81 KOG2792 Putative cytochrome C 97.7 0.00011 2.3E-09 63.9 7.5 95 77-178 120-227 (280)
82 cd02956 ybbN ybbN protein fami 97.7 5.4E-05 1.2E-09 55.8 5.1 44 101-145 13-56 (96)
83 cd03003 PDI_a_ERdj5_N PDIa fam 97.7 0.00017 3.6E-09 53.9 6.9 43 101-144 19-61 (101)
84 TIGR01295 PedC_BrcD bacterioci 97.7 0.0011 2.4E-08 51.7 11.7 40 101-143 24-63 (122)
85 cd02959 ERp19 Endoplasmic reti 97.6 8.9E-05 1.9E-09 57.5 5.1 70 101-172 20-92 (117)
86 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.0002 4.3E-09 55.2 6.5 44 101-145 30-73 (113)
87 cd02994 PDI_a_TMX PDIa family, 97.6 0.0002 4.3E-09 53.3 6.2 44 101-145 18-61 (101)
88 cd02953 DsbDgamma DsbD gamma f 97.6 0.00023 5.1E-09 53.3 6.6 66 101-168 12-85 (104)
89 cd02997 PDI_a_PDIR PDIa family 97.6 0.00011 2.5E-09 54.6 4.8 43 101-143 18-61 (104)
90 PRK10996 thioredoxin 2; Provis 97.5 9.6E-05 2.1E-09 59.0 4.2 53 90-145 44-96 (139)
91 cd02952 TRP14_like Human TRX-r 97.5 0.00023 4.9E-09 55.5 6.0 59 101-176 23-88 (119)
92 cd02975 PfPDO_like_N Pyrococcu 97.5 0.0011 2.4E-08 50.9 9.3 41 101-143 23-63 (113)
93 cd02996 PDI_a_ERp44 PDIa famil 97.5 0.00038 8.2E-09 52.6 6.3 43 101-143 19-66 (108)
94 cd03005 PDI_a_ERp46 PDIa famil 97.5 0.00037 8E-09 51.6 6.1 43 101-144 18-62 (102)
95 cd02949 TRX_NTR TRX domain, no 97.5 0.00046 1E-08 51.2 6.6 44 100-144 13-56 (97)
96 cd02995 PDI_a_PDI_a'_C PDIa fa 97.4 0.00043 9.2E-09 51.3 6.0 44 101-144 19-63 (104)
97 cd03004 PDI_a_ERdj5_C PDIa fam 97.4 0.00064 1.4E-08 50.8 7.0 42 101-143 20-61 (104)
98 PTZ00051 thioredoxin; Provisio 97.4 0.00048 1E-08 50.8 5.9 41 101-143 19-59 (98)
99 cd02986 DLP Dim1 family, Dim1- 97.4 0.00061 1.3E-08 52.5 6.6 42 101-143 15-56 (114)
100 cd02992 PDI_a_QSOX PDIa family 97.4 0.00081 1.8E-08 51.7 7.2 42 101-142 20-63 (114)
101 cd02984 TRX_PICOT TRX domain, 97.3 0.00092 2E-08 49.1 6.7 42 101-143 15-56 (97)
102 cd02998 PDI_a_ERp38 PDIa famil 97.3 0.00063 1.4E-08 50.4 5.7 43 101-143 19-62 (105)
103 PHA02278 thioredoxin-like prot 97.2 0.001 2.3E-08 50.4 6.3 42 101-143 15-56 (103)
104 KOG0907 Thioredoxin [Posttrans 97.2 0.00081 1.8E-08 51.3 5.3 41 101-143 22-62 (106)
105 cd02989 Phd_like_TxnDC9 Phosdu 97.2 0.012 2.6E-07 45.1 11.8 41 101-143 23-63 (113)
106 PF00085 Thioredoxin: Thioredo 97.2 0.0023 5E-08 47.1 7.5 42 101-144 19-60 (103)
107 cd03001 PDI_a_P5 PDIa family, 97.1 0.0018 3.8E-08 48.0 6.7 43 101-144 19-61 (103)
108 TIGR01126 pdi_dom protein disu 97.1 0.00084 1.8E-08 49.4 4.9 43 101-143 14-57 (102)
109 PLN00410 U5 snRNP protein, DIM 97.1 0.0015 3.2E-08 52.5 6.6 44 101-145 24-67 (142)
110 cd02961 PDI_a_family Protein D 97.1 0.00076 1.7E-08 49.0 4.5 43 101-143 16-59 (101)
111 TIGR01068 thioredoxin thioredo 97.1 0.00096 2.1E-08 48.9 4.6 44 101-145 15-58 (101)
112 COG0526 TrxA Thiol-disulfide i 97.0 0.0029 6.2E-08 46.3 6.7 55 101-157 34-91 (127)
113 TIGR00424 APS_reduc 5'-adenyly 96.9 0.0017 3.7E-08 61.7 6.3 45 100-144 371-415 (463)
114 COG4312 Uncharacterized protei 96.9 0.0028 6.2E-08 53.8 6.2 93 81-177 57-155 (247)
115 TIGR00411 redox_disulf_1 small 96.8 0.0033 7.1E-08 44.6 5.7 40 103-143 2-41 (82)
116 cd02957 Phd_like Phosducin (Ph 96.7 0.0038 8.2E-08 47.7 5.8 40 101-142 25-64 (113)
117 PF09695 YtfJ_HI0045: Bacteria 96.7 0.028 6E-07 45.7 10.8 142 70-255 1-159 (160)
118 cd02947 TRX_family TRX family; 96.7 0.0058 1.3E-07 43.3 6.1 41 101-143 11-51 (93)
119 PTZ00443 Thioredoxin domain-co 96.6 0.0048 1E-07 53.3 6.3 43 101-144 53-95 (224)
120 KOG0910 Thioredoxin-like prote 96.6 0.0046 9.9E-08 49.8 5.5 44 98-143 60-103 (150)
121 cd03065 PDI_b_Calsequestrin_N 96.6 0.0047 1E-07 48.1 5.4 44 100-143 27-75 (120)
122 cd01659 TRX_superfamily Thiore 96.6 0.0063 1.4E-07 39.2 5.1 43 105-149 2-44 (69)
123 PRK00293 dipZ thiol:disulfide 96.5 0.01 2.2E-07 58.2 8.5 40 101-142 475-517 (571)
124 PLN02309 5'-adenylylsulfate re 96.5 0.0051 1.1E-07 58.5 6.0 43 100-142 365-407 (457)
125 PF13728 TraF: F plasmid trans 96.4 0.01 2.3E-07 50.9 6.9 72 91-180 115-186 (215)
126 TIGR01130 ER_PDI_fam protein d 96.4 0.0091 2E-07 56.1 6.8 44 101-144 19-64 (462)
127 COG3118 Thioredoxin domain-con 96.3 0.009 1.9E-07 53.2 5.9 44 101-145 44-87 (304)
128 cd02987 Phd_like_Phd Phosducin 96.0 0.016 3.4E-07 48.2 5.8 40 102-143 85-124 (175)
129 cd02965 HyaE HyaE family; HyaE 96.0 0.019 4.2E-07 44.1 5.8 39 100-140 28-68 (111)
130 PF13899 Thioredoxin_7: Thiore 96.0 0.038 8.3E-07 39.5 7.1 61 101-164 18-81 (82)
131 PRK13703 conjugal pilus assemb 96.0 0.021 4.7E-07 50.0 6.6 72 91-180 138-209 (248)
132 PTZ00102 disulphide isomerase; 95.9 0.011 2.3E-07 56.2 5.0 43 101-143 376-419 (477)
133 PTZ00102 disulphide isomerase; 95.9 0.022 4.7E-07 54.1 7.0 44 101-144 50-95 (477)
134 cd02973 TRX_GRX_like Thioredox 95.9 0.025 5.4E-07 38.6 5.5 38 104-143 3-40 (67)
135 cd02982 PDI_b'_family Protein 95.8 0.023 5.1E-07 41.9 5.4 41 101-143 14-54 (103)
136 cd02960 AGR Anterior Gradient 95.8 0.015 3.3E-07 45.9 4.4 98 101-203 24-124 (130)
137 TIGR02739 TraF type-F conjugat 95.8 0.029 6.4E-07 49.4 6.7 79 91-187 145-223 (256)
138 cd02955 SSP411 TRX domain, SSP 95.7 0.066 1.4E-06 41.9 7.6 69 101-171 16-95 (124)
139 TIGR00412 redox_disulf_2 small 95.6 0.031 6.6E-07 39.6 5.2 38 104-145 3-40 (76)
140 PF07976 Phe_hydrox_dim: Pheno 95.5 0.039 8.5E-07 45.5 6.2 112 66-177 26-166 (169)
141 PTZ00062 glutaredoxin; Provisi 95.4 0.029 6.3E-07 47.8 5.2 40 101-142 18-57 (204)
142 TIGR02187 GlrX_arch Glutaredox 95.4 0.041 8.9E-07 46.9 6.1 40 101-142 21-62 (215)
143 TIGR01130 ER_PDI_fam protein d 95.4 0.034 7.4E-07 52.2 6.1 44 101-144 365-410 (462)
144 TIGR02187 GlrX_arch Glutaredox 94.7 0.095 2.1E-06 44.7 6.4 42 100-143 133-174 (215)
145 PF04592 SelP_N: Selenoprotein 94.7 0.14 3.1E-06 44.2 7.3 91 75-176 9-109 (238)
146 cd02988 Phd_like_VIAF Phosduci 94.6 0.068 1.5E-06 45.0 5.3 40 101-142 103-142 (192)
147 cd03026 AhpF_NTD_C TRX-GRX-lik 94.5 0.11 2.3E-06 38.2 5.4 40 101-142 13-52 (89)
148 TIGR02196 GlrX_YruB Glutaredox 94.4 0.19 4.2E-06 34.0 6.4 47 104-157 2-52 (74)
149 PF06110 DUF953: Eukaryotic pr 94.4 0.12 2.7E-06 40.1 5.8 45 100-145 20-70 (119)
150 TIGR02200 GlrX_actino Glutared 94.0 0.18 3.9E-06 34.9 5.6 34 105-145 3-36 (77)
151 PF14595 Thioredoxin_9: Thiore 93.7 0.12 2.5E-06 40.8 4.5 40 101-142 42-81 (129)
152 PHA02125 thioredoxin-like prot 93.3 0.27 5.9E-06 34.5 5.5 21 104-124 2-22 (75)
153 TIGR02180 GRX_euk Glutaredoxin 92.8 0.37 8E-06 33.9 5.7 54 106-164 3-61 (84)
154 PF00462 Glutaredoxin: Glutare 92.7 0.51 1.1E-05 31.4 5.9 51 105-164 2-56 (60)
155 PRK11200 grxA glutaredoxin 1; 92.7 0.3 6.6E-06 35.0 5.1 38 104-143 3-40 (85)
156 TIGR02190 GlrX-dom Glutaredoxi 92.4 0.53 1.2E-05 33.3 6.1 47 105-158 11-60 (79)
157 KOG0908 Thioredoxin-like prote 92.3 0.19 4.2E-06 43.8 4.2 41 100-142 21-61 (288)
158 cd02958 UAS UAS family; UAS is 91.7 0.72 1.6E-05 34.9 6.5 67 100-169 17-90 (114)
159 smart00594 UAS UAS domain. 91.5 0.79 1.7E-05 35.4 6.6 65 100-167 27-97 (122)
160 cd02976 NrdH NrdH-redoxin (Nrd 91.4 0.89 1.9E-05 30.6 6.2 51 105-165 3-57 (73)
161 cd02066 GRX_family Glutaredoxi 91.2 1.1 2.4E-05 29.9 6.4 45 106-157 4-52 (72)
162 cd03023 DsbA_Com1_like DsbA fa 90.9 0.45 9.7E-06 37.3 4.8 37 100-138 5-41 (154)
163 cd03029 GRX_hybridPRX5 Glutare 90.9 1 2.2E-05 31.0 6.1 51 106-165 5-58 (72)
164 KOG0190 Protein disulfide isom 90.8 0.29 6.2E-06 46.9 4.1 61 101-164 43-108 (493)
165 KOG3425 Uncharacterized conser 90.3 0.69 1.5E-05 35.9 5.0 35 110-145 43-77 (128)
166 TIGR00365 monothiol glutaredox 89.7 1.5 3.3E-05 32.5 6.5 54 101-164 13-74 (97)
167 KOG0191 Thioredoxin/protein di 89.7 0.63 1.4E-05 43.2 5.4 43 100-144 48-90 (383)
168 KOG0190 Protein disulfide isom 89.7 0.46 9.9E-06 45.6 4.4 33 100-132 384-416 (493)
169 PF13778 DUF4174: Domain of un 89.1 7.6 0.00016 29.9 10.2 51 91-143 3-53 (118)
170 COG0695 GrxC Glutaredoxin and 88.9 1.4 2.9E-05 31.6 5.5 51 106-165 5-61 (80)
171 cd03028 GRX_PICOT_like Glutare 88.9 2 4.2E-05 31.3 6.5 55 101-164 9-70 (90)
172 PRK01655 spxA transcriptional 88.9 1 2.2E-05 35.4 5.2 66 104-177 2-71 (131)
173 cd03418 GRX_GRXb_1_3_like Glut 88.7 2.4 5.2E-05 29.1 6.6 52 105-165 3-59 (75)
174 cd03419 GRX_GRXh_1_2_like Glut 88.3 1.7 3.7E-05 30.3 5.7 53 105-164 3-60 (82)
175 cd03027 GRX_DEP Glutaredoxin ( 88.1 2.4 5.2E-05 29.2 6.3 50 106-164 5-58 (73)
176 TIGR02194 GlrX_NrdH Glutaredox 88.1 2 4.3E-05 29.7 5.8 47 105-158 2-51 (72)
177 PF13462 Thioredoxin_4: Thiore 87.7 2.3 5.1E-05 33.6 6.8 41 101-141 13-54 (162)
178 cd03032 ArsC_Spx Arsenate Redu 87.5 1.9 4.1E-05 32.9 5.9 64 104-177 2-71 (115)
179 PHA03050 glutaredoxin; Provisi 87.1 2.5 5.3E-05 32.1 6.2 18 107-124 18-35 (108)
180 PRK10638 glutaredoxin 3; Provi 87.1 2.6 5.6E-05 29.9 6.1 51 105-164 5-59 (83)
181 KOG0191 Thioredoxin/protein di 86.9 1.3 2.8E-05 41.2 5.5 56 101-157 164-220 (383)
182 cd03036 ArsC_like Arsenate Red 86.9 1.8 4E-05 32.8 5.5 64 105-176 2-69 (111)
183 COG4232 Thiol:disulfide interc 86.9 0.88 1.9E-05 44.3 4.4 67 101-169 476-547 (569)
184 PRK10329 glutaredoxin-like pro 86.7 3.2 6.9E-05 29.7 6.3 47 104-157 3-52 (81)
185 cd02979 PHOX_C FAD-dependent P 85.8 2.7 5.9E-05 34.4 6.3 104 73-176 1-133 (167)
186 PRK12559 transcriptional regul 85.7 3.3 7.2E-05 32.6 6.5 66 104-177 2-71 (131)
187 cd02977 ArsC_family Arsenate R 85.7 2.2 4.7E-05 31.9 5.3 64 105-176 2-69 (105)
188 cd03035 ArsC_Yffb Arsenate Red 85.5 2.4 5.1E-05 32.0 5.4 62 105-176 2-67 (105)
189 TIGR02181 GRX_bact Glutaredoxi 85.4 2.8 6E-05 29.3 5.4 51 105-164 2-56 (79)
190 TIGR02189 GlrX-like_plant Glut 85.3 2.7 5.9E-05 31.3 5.5 33 101-142 9-41 (99)
191 COG2910 Putative NADH-flavin r 85.2 2 4.4E-05 36.1 5.2 120 92-235 58-188 (211)
192 TIGR02183 GRXA Glutaredoxin, G 84.8 1.8 4E-05 31.1 4.3 37 104-142 2-38 (86)
193 PF05176 ATP-synt_10: ATP10 pr 84.6 6.8 0.00015 34.5 8.6 68 73-144 98-168 (252)
194 PRK10824 glutaredoxin-4; Provi 84.6 3.7 8E-05 31.7 6.1 55 101-165 16-78 (115)
195 TIGR01617 arsC_related transcr 83.8 3.4 7.4E-05 31.6 5.7 64 105-176 2-69 (117)
196 PRK13344 spxA transcriptional 83.7 4.4 9.4E-05 31.9 6.4 66 104-177 2-71 (132)
197 COG2179 Predicted hydrolase of 83.6 3 6.4E-05 34.4 5.4 40 119-158 48-87 (175)
198 PRK08294 phenol 2-monooxygenas 81.3 11 0.00023 37.7 9.5 59 68-126 461-520 (634)
199 PF11009 DUF2847: Protein of u 80.5 13 0.00028 28.2 7.6 58 101-177 20-77 (105)
200 cd03019 DsbA_DsbA DsbA family, 75.0 5.1 0.00011 32.2 4.4 36 101-137 16-51 (178)
201 TIGR00014 arsC arsenate reduct 74.9 12 0.00026 28.5 6.1 65 105-177 2-71 (114)
202 PRK08132 FAD-dependent oxidore 74.2 30 0.00065 33.5 10.2 86 69-175 426-511 (547)
203 PF13192 Thioredoxin_3: Thiore 73.2 11 0.00023 26.3 5.1 30 109-141 7-36 (76)
204 cd03020 DsbA_DsbC_DsbG DsbA fa 73.1 6.3 0.00014 32.8 4.6 24 101-124 78-101 (197)
205 KOG1731 FAD-dependent sulfhydr 72.5 3.1 6.7E-05 40.5 2.8 46 102-148 60-107 (606)
206 PTZ00062 glutaredoxin; Provisi 72.3 12 0.00027 31.7 6.2 63 91-164 106-175 (204)
207 TIGR02174 CXXU_selWTH selT/sel 72.2 11 0.00023 26.4 4.8 36 217-254 36-72 (72)
208 PRK10877 protein disulfide iso 70.2 10 0.00022 32.7 5.4 35 101-139 108-142 (232)
209 PRK06184 hypothetical protein; 70.1 37 0.0008 32.5 9.7 77 69-175 385-461 (502)
210 PRK11509 hydrogenase-1 operon 69.4 54 0.0012 25.9 9.2 52 89-142 25-78 (132)
211 cd03007 PDI_a_ERp29_N PDIa fam 68.6 12 0.00026 28.9 4.8 48 90-143 10-61 (116)
212 cd02972 DsbA_family DsbA famil 68.3 8.5 0.00018 26.9 3.8 34 105-139 2-35 (98)
213 PF10262 Rdx: Rdx family; Int 67.7 4.5 9.7E-05 28.5 2.1 37 217-255 38-75 (76)
214 cd03060 GST_N_Omega_like GST_N 64.8 14 0.0003 25.0 4.2 51 106-166 3-56 (71)
215 PRK10853 putative reductase; P 63.2 20 0.00044 27.5 5.3 63 104-176 2-68 (118)
216 KOG0912 Thiol-disulfide isomer 63.1 9.7 0.00021 34.5 3.8 43 102-144 15-61 (375)
217 PF05768 DUF836: Glutaredoxin- 61.2 21 0.00045 25.2 4.7 39 104-145 2-40 (81)
218 TIGR03759 conj_TIGR03759 integ 60.3 30 0.00065 29.3 6.0 51 101-157 110-161 (200)
219 cd03033 ArsC_15kD Arsenate Red 58.5 32 0.0007 26.2 5.6 64 104-177 2-69 (113)
220 TIGR03765 ICE_PFL_4695 integra 58.4 52 0.0011 25.0 6.4 56 120-178 38-94 (105)
221 COG0821 gcpE 1-hydroxy-2-methy 58.0 94 0.002 28.6 9.1 98 101-206 21-123 (361)
222 PF06053 DUF929: Domain of unk 58.0 14 0.00031 32.4 3.9 33 100-132 58-90 (249)
223 PRK10026 arsenate reductase; P 57.1 41 0.00089 26.9 6.1 66 104-177 4-73 (141)
224 cd03041 GST_N_2GST_N GST_N fam 56.5 48 0.001 22.8 5.9 50 105-165 3-57 (77)
225 PF11072 DUF2859: Protein of u 56.1 47 0.001 26.6 6.3 57 119-178 75-132 (142)
226 PRK11657 dsbG disulfide isomer 55.6 28 0.00061 30.4 5.4 36 101-139 118-153 (251)
227 PRK10954 periplasmic protein d 54.4 16 0.00034 30.8 3.6 36 101-138 39-77 (207)
228 PF03190 Thioredox_DsbH: Prote 53.0 11 0.00023 31.0 2.2 67 101-169 38-115 (163)
229 COG1651 DsbG Protein-disulfide 52.3 38 0.00082 28.9 5.7 46 83-132 71-116 (244)
230 cd03034 ArsC_ArsC Arsenate Red 51.5 44 0.00095 25.2 5.3 65 105-177 2-70 (112)
231 COG1393 ArsC Arsenate reductas 51.0 43 0.00092 25.8 5.2 66 103-176 2-71 (117)
232 KOG1752 Glutaredoxin and relat 49.8 40 0.00086 25.5 4.7 33 102-142 15-47 (104)
233 TIGR00995 3a0901s06TIC22 chlor 48.1 57 0.0012 29.0 6.1 84 71-165 77-160 (270)
234 PRK06183 mhpA 3-(3-hydroxyphen 46.8 65 0.0014 31.2 7.0 89 69-175 410-498 (538)
235 PRK12759 bifunctional gluaredo 42.2 58 0.0013 30.6 5.7 32 106-144 6-37 (410)
236 TIGR01616 nitro_assoc nitrogen 41.8 69 0.0015 24.9 5.1 63 104-176 3-69 (126)
237 PF00626 Gelsolin: Gelsolin re 41.3 26 0.00057 23.8 2.5 23 217-239 14-36 (76)
238 TIGR03143 AhpF_homolog putativ 39.7 64 0.0014 31.5 5.7 41 100-142 476-516 (555)
239 PF08925 DUF1907: Domain of Un 38.7 24 0.00052 31.6 2.3 42 195-244 167-208 (284)
240 COG3019 Predicted metal-bindin 37.8 94 0.002 24.9 5.2 48 101-158 25-72 (149)
241 cd02991 UAS_ETEA UAS family, E 36.1 1.3E+02 0.0029 22.8 5.9 43 100-146 17-65 (116)
242 cd00570 GST_N_family Glutathio 34.1 52 0.0011 20.9 3.0 51 106-165 3-56 (71)
243 cd03059 GST_N_SspA GST_N famil 33.2 96 0.0021 20.5 4.3 19 106-124 3-21 (73)
244 PF01323 DSBA: DSBA-like thior 33.0 93 0.002 25.0 4.9 40 104-143 2-41 (193)
245 PRK10200 putative racemase; Pr 33.0 83 0.0018 27.0 4.8 40 118-157 60-100 (230)
246 PF12710 HAD: haloacid dehalog 32.4 48 0.001 26.6 3.1 35 124-158 96-130 (192)
247 TIGR00612 ispG_gcpE 1-hydroxy- 32.1 3E+02 0.0065 25.4 8.2 99 101-206 19-121 (346)
248 PF03960 ArsC: ArsC family; I 31.9 2E+02 0.0044 21.2 6.3 58 109-174 3-64 (110)
249 PHA03075 glutaredoxin-like pro 31.3 75 0.0016 24.6 3.6 36 102-137 3-38 (123)
250 cd01427 HAD_like Haloacid deha 31.2 94 0.002 22.6 4.4 39 118-156 25-63 (139)
251 PF08821 CGGC: CGGC domain; I 31.1 1.3E+02 0.0028 22.8 5.0 48 87-141 26-73 (107)
252 KOG1615 Phosphoserine phosphat 31.1 67 0.0014 27.4 3.6 50 120-169 91-145 (227)
253 PF00875 DNA_photolyase: DNA p 30.8 67 0.0014 25.7 3.6 46 118-165 51-96 (165)
254 PF09419 PGP_phosphatase: Mito 30.7 1.1E+02 0.0024 25.2 4.8 80 75-157 17-108 (168)
255 cd03025 DsbA_FrnE_like DsbA fa 29.6 58 0.0013 26.4 3.1 33 104-137 3-35 (193)
256 PRK13602 putative ribosomal pr 29.6 2.1E+02 0.0045 20.3 6.0 54 123-178 17-74 (82)
257 PLN03098 LPA1 LOW PSII ACCUMUL 28.8 1.7E+02 0.0038 28.0 6.4 67 71-142 271-337 (453)
258 COG3054 Predicted transcriptio 28.4 1.1E+02 0.0024 25.0 4.3 31 222-254 149-180 (184)
259 PF09897 DUF2124: Uncharacteri 28.3 57 0.0012 26.3 2.7 61 101-166 81-141 (147)
260 KOG3414 Component of the U4/U6 28.0 1.8E+02 0.0039 23.0 5.3 48 101-152 24-71 (142)
261 COG3322 Predicted periplasmic 27.8 1E+02 0.0022 27.8 4.5 37 218-254 102-141 (295)
262 PF02484 Rhabdo_NV: Rhabdoviru 27.5 19 0.00042 26.4 -0.1 20 221-240 25-44 (111)
263 PF04278 Tic22: Tic22-like fam 26.8 1.1E+02 0.0023 27.3 4.5 66 73-147 72-141 (274)
264 cd03061 GST_N_CLIC GST_N famil 26.6 84 0.0018 23.0 3.1 45 110-166 20-69 (91)
265 PF10740 DUF2529: Protein of u 26.4 1.2E+02 0.0026 25.1 4.3 89 71-175 58-151 (172)
266 cd03040 GST_N_mPGES2 GST_N fam 25.9 90 0.002 21.1 3.1 30 106-142 4-33 (77)
267 PF07905 PucR: Purine cataboli 25.1 2.5E+02 0.0054 21.3 5.8 37 121-157 60-101 (123)
268 TIGR01662 HAD-SF-IIIA HAD-supe 25.0 1.5E+02 0.0031 22.4 4.5 38 120-157 28-73 (132)
269 PRK13738 conjugal transfer pil 24.9 78 0.0017 27.1 3.1 40 133-179 146-185 (209)
270 PRK11869 2-oxoacid ferredoxin 24.3 55 0.0012 29.3 2.1 23 107-129 6-30 (280)
271 PRK00366 ispG 4-hydroxy-3-meth 23.9 5.4E+02 0.012 23.9 8.4 99 101-206 27-130 (360)
272 KOG4277 Uncharacterized conser 23.8 35 0.00075 31.0 0.8 33 101-134 45-77 (468)
273 PRK13600 putative ribosomal pr 23.6 2.9E+02 0.0063 20.0 6.0 55 122-178 18-76 (84)
274 TIGR01761 thiaz-red thiazoliny 23.6 1.1E+02 0.0024 28.1 4.0 48 111-166 10-57 (343)
275 PF01011 PQQ: PQQ enzyme repea 23.4 1.4E+02 0.0029 17.6 3.2 21 220-240 9-31 (38)
276 TIGR00035 asp_race aspartate r 23.4 1.7E+02 0.0036 24.9 4.9 55 118-175 60-117 (229)
277 cd03055 GST_N_Omega GST_N fami 23.0 1.9E+02 0.0041 20.4 4.5 20 105-124 20-39 (89)
278 PRK13601 putative L7Ae-like ri 22.8 2.9E+02 0.0064 19.7 5.8 51 126-178 17-71 (82)
279 TIGR01490 HAD-SF-IB-hyp1 HAD-s 22.8 2.1E+02 0.0046 23.2 5.3 38 120-157 90-127 (202)
280 KOG0911 Glutaredoxin-related p 22.2 74 0.0016 27.5 2.4 42 101-144 18-59 (227)
281 cd05013 SIS_RpiR RpiR-like pro 22.2 2.4E+02 0.0052 20.9 5.2 45 102-152 62-106 (139)
282 COG2143 Thioredoxin-related pr 22.0 4.1E+02 0.0089 21.9 6.5 22 101-122 43-64 (182)
283 TIGR01488 HAD-SF-IB Haloacid D 21.9 1.6E+02 0.0036 23.1 4.4 38 120-157 76-113 (177)
284 PF13419 HAD_2: Haloacid dehal 21.8 1.2E+02 0.0026 23.3 3.6 35 121-155 81-115 (176)
285 PF00702 Hydrolase: haloacid d 21.6 1.3E+02 0.0029 24.3 3.9 38 120-157 130-167 (215)
286 COG1794 RacX Aspartate racemas 21.3 2.3E+02 0.0051 24.6 5.3 57 120-177 62-119 (230)
287 cd01450 vWFA_subfamily_ECM Von 20.9 2.6E+02 0.0056 21.2 5.3 45 103-151 106-152 (161)
288 PRK06683 hypothetical protein; 20.9 3.2E+02 0.0069 19.4 5.8 51 126-178 20-74 (82)
289 cd01285 nucleoside_deaminase N 20.8 1.5E+02 0.0033 22.0 3.8 37 218-255 17-59 (109)
290 PF02966 DIM1: Mitosis protein 20.7 4.3E+02 0.0094 20.9 6.5 43 101-144 21-63 (133)
291 cd03037 GST_N_GRX2 GST_N famil 20.7 2.6E+02 0.0057 18.4 5.1 18 107-124 4-21 (71)
292 cd03051 GST_N_GTT2_like GST_N 20.7 86 0.0019 20.6 2.2 20 105-124 2-21 (74)
293 PF09579 Spore_YtfJ: Sporulati 20.5 2E+02 0.0044 20.6 4.1 28 222-253 50-77 (83)
294 PF13417 GST_N_3: Glutathione 20.3 1.5E+02 0.0032 20.1 3.3 49 107-165 2-53 (75)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-29 Score=200.60 Aligned_cols=150 Identities=22% Similarity=0.323 Sum_probs=132.2
Q ss_pred CCcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHH
Q 024977 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (259)
Q Consensus 68 ~~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~ 147 (259)
.++++|+++|||+|++.+|+.++|+|++|+ ++||+||+..++|.|..|+..|++.+++|++.|+.|++||+++++++
T Consensus 2 ~~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk---~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 2 MMLKVGDKAPDFELPDQDGETVSLSDLRGK---PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CcCCCCCcCCCeEeecCCCCEEehHHhcCC---cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 467899999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHh--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEE
Q 024977 148 QILAE--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFV 225 (259)
Q Consensus 148 ~~f~~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fV 225 (259)
++|++ +++|+ |+||++++++++||+..... .....+....+.+||
T Consensus 79 ~~F~~k~~L~f~---LLSD~~~~v~~~ygv~~~k~------------------------------~~gk~~~~~~R~Tfv 125 (157)
T COG1225 79 KKFAEKHGLTFP---LLSDEDGEVAEAYGVWGEKK------------------------------MYGKEYMGIERSTFV 125 (157)
T ss_pred HHHHHHhCCCce---eeECCcHHHHHHhCcccccc------------------------------cCccccccccceEEE
Confidence 99998 57777 99999999999999965311 001123567899999
Q ss_pred Ee-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 226 FK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 226 id-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
|| +|+|+|.| .+....+..+++++++++
T Consensus 126 Id~dG~I~~~~--~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 126 IDPDGKIRYVW--RKVKVKGHADEVLAALKK 154 (157)
T ss_pred ECCCCeEEEEe--cCCCCcccHHHHHHHHHH
Confidence 99 89999999 566667778999998875
No 2
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.94 E-value=1.6e-26 Score=185.48 Aligned_cols=146 Identities=38% Similarity=0.613 Sum_probs=117.4
Q ss_pred CCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh--
Q 024977 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE-- 152 (259)
Q Consensus 75 ~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~-- 152 (259)
.+|+|++.|.+|+.++++++.++ +++||+|||++|||.|+.+++.|+++++++++.|+++|+|+.++.+...+|.+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~--~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~ 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGE--GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGK 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcC--CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhc
Confidence 47999999999999999999864 48999999999999999999999999999999999999999999888888887
Q ss_pred hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-CCeE
Q 024977 153 RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK-GKQL 231 (259)
Q Consensus 153 ~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid-~g~V 231 (259)
+++|| +++|++++++++||+..........+.. .. +.......+..++..++||+|||| +|+|
T Consensus 79 ~~~~p---~~~D~~~~~~~~~g~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~~p~~fvid~~g~i 142 (149)
T cd02970 79 FLPFP---VYADPDRKLYRALGLVRSLPWSNTPRAL----------WK---NAAIGFRGNDEGDGLQLPGVFVIGPDGTI 142 (149)
T ss_pred CCCCe---EEECCchhHHHHcCceecCcHHHHHHHH----------hh---CcccccccCCCCcccccceEEEECCCCeE
Confidence 57788 9999999999999997654322211110 00 111111223345589999999999 8999
Q ss_pred EEEEecC
Q 024977 232 LYARKDE 238 (259)
Q Consensus 232 ~y~~~~~ 238 (259)
+|.|++.
T Consensus 143 ~~~~~~~ 149 (149)
T cd02970 143 LFAHVDR 149 (149)
T ss_pred EEEecCC
Confidence 9999863
No 3
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.92 E-value=1.5e-24 Score=185.78 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=124.1
Q ss_pred CCcccCCCCCCcEEecCCCCeEeccc-ccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHH
Q 024977 68 FPANVGDLLGDFSIFTAAGEPVLFKD-LWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (259)
Q Consensus 68 ~~~~vG~~aPdf~l~d~~G~~v~lsd-l~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~ 146 (259)
.++.+|+++|+|++.+.+|+ +.+++ +.|+ ++||+|||+.|||.|..|+++|++.+++|+++|++|++||.++...
T Consensus 5 ~~~~iG~~aPdF~l~~~~G~-~~l~~~~~GK---~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 5 RIPLIGEKFPEMEVITTHGK-IKLPDDYKGR---WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred ccccCCCcCCCCEeecCCCC-EEcHHHhCCC---cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 46779999999999999997 56644 6765 8999999999999999999999999999999999999999999998
Q ss_pred HHHHHh--------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCcc
Q 024977 147 AQILAE--------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVL 218 (259)
Q Consensus 147 ~~~f~~--------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (259)
+++|++ +++|| +++|++++++++||+.... +...
T Consensus 81 h~aw~~~~~~~~~~~i~fP---llsD~~~~ia~~ygv~~~~-----------------------------------~~~~ 122 (215)
T PRK13191 81 HIEWVMWIEKNLKVEVPFP---IIADPMGNVAKRLGMIHAE-----------------------------------SSTA 122 (215)
T ss_pred HHHHHhhHHHhcCCCCceE---EEECCchHHHHHcCCcccc-----------------------------------cCCc
Confidence 888764 36788 9999999999999985310 0124
Q ss_pred ccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 219 QQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 219 ~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
.+|++|||| +|+|+|.++......| +++|+|+++.+
T Consensus 123 ~~r~tfIID~~G~Ir~~~~~~~~~gr-~~~eilr~l~a 159 (215)
T PRK13191 123 TVRAVFIVDDKGTVRLILYYPMEIGR-NIDEILRAIRA 159 (215)
T ss_pred eeEEEEEECCCCEEEEEEecCCCCCC-CHHHHHHHHHH
Confidence 688999999 8999999988766666 99999999865
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=2e-24 Score=173.87 Aligned_cols=142 Identities=24% Similarity=0.383 Sum_probs=125.5
Q ss_pred cccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHH
Q 024977 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (259)
Q Consensus 70 ~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~ 149 (259)
+++|+.+|+|++.+.+|+.++++++.|+ +++||+|||++||+.|..+++.|+++++++++.|+++|+|+.++++.+++
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~--k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 78 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGR--KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA 78 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcCC--CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH
Confidence 4689999999999999999999999983 28899999999999999999999999999999999999999999999999
Q ss_pred HHh--hCCCCCCCcccCCc--hHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEE
Q 024977 150 LAE--RLPFPMDCLYADPD--RKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFV 225 (259)
Q Consensus 150 f~~--~~~fp~~~ll~D~~--~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fV 225 (259)
|.+ +++|| +++|++ +++++.||+.... +.++.+.+||
T Consensus 79 ~~~~~~~~~~---~~~D~~~~~~~~~~~g~~~~~------------------------------------~~~~~~~~~l 119 (149)
T cd03018 79 WAEENGLTFP---LLSDFWPHGEVAKAYGVFDED------------------------------------LGVAERAVFV 119 (149)
T ss_pred HHHhcCCCce---EecCCCchhHHHHHhCCcccc------------------------------------CCCccceEEE
Confidence 998 46777 899987 9999999985310 0244668999
Q ss_pred Ee-CCeEEEEEecCC--CCCCCCHHHHHHH
Q 024977 226 FK-GKQLLYARKDEG--TGDHASLDDVFDI 252 (259)
Q Consensus 226 id-~g~V~y~~~~~~--~~d~~~~~~iL~a 252 (259)
|| +|+|+|.|...+ ..+.|++++++++
T Consensus 120 id~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 120 IDRDGIIRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred ECCCCEEEEEEecCCcccccchhHHHHhhC
Confidence 99 899999999999 8999999998874
No 5
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=1.8e-24 Score=181.69 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=124.0
Q ss_pred ccCCCCCCcEEec-CCCC--eEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHH
Q 024977 71 NVGDLLGDFSIFT-AAGE--PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (259)
Q Consensus 71 ~vG~~aPdf~l~d-~~G~--~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~ 147 (259)
.+|+.+|+|++.+ .+|+ .++++++.|+ ++||+|||+.|||.|..|++.|++.+++|++.|++|++||.++++.+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk---~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGK---WSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCC---EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHH
Confidence 5799999999998 5776 6888899886 89999999999999999999999999999999999999999999888
Q ss_pred HHHHh------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccC
Q 024977 148 QILAE------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQG 221 (259)
Q Consensus 148 ~~f~~------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 221 (259)
++|++ +++|| +++|++++++++||+.... .++..|
T Consensus 80 ~~~~~~~~~~~~l~fp---llsD~~~~~a~~~gv~~~~------------------------------------~g~~~p 120 (187)
T TIGR03137 80 KAWHDTSEAIGKITYP---MLGDPTGVLTRNFGVLIEE------------------------------------AGLADR 120 (187)
T ss_pred HHHHhhhhhccCccee---EEECCccHHHHHhCCcccC------------------------------------CCceee
Confidence 88875 37788 9999999999999985310 023468
Q ss_pred eEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhccC
Q 024977 222 GMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCKV 256 (259)
Q Consensus 222 g~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~~ 256 (259)
++|||| +|+|+|.|+......+ ++++||+++++.
T Consensus 121 ~tfiID~~G~I~~~~~~~~~~~~-~~~~ll~~l~~~ 155 (187)
T TIGR03137 121 GTFVIDPEGVIQAVEITDNGIGR-DASELLRKIKAA 155 (187)
T ss_pred EEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHHh
Confidence 999999 8999999998777766 999999988543
No 6
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=3.5e-24 Score=176.84 Aligned_cols=148 Identities=13% Similarity=0.179 Sum_probs=125.5
Q ss_pred CCCcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHH
Q 024977 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (259)
Q Consensus 67 ~~~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~ 146 (259)
...+.+|+.+|+|++.|.+|+.++++++.|+ ++||+||+..|||+|..|++.|++.++++ .|++|++||.++++.
T Consensus 15 ~~~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk---~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~ 89 (167)
T PRK00522 15 GSLPQVGDKAPDFTLVANDLSDVSLADFAGK---RKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFA 89 (167)
T ss_pred CCCCCCCCCCCCeEEEcCCCcEEehHHhCCC---EEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHH
Confidence 4567799999999999999999999999875 77777776666999999999999999998 499999999999988
Q ss_pred HHHHHhhC--C-CCCCCcccC-CchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCe
Q 024977 147 AQILAERL--P-FPMDCLYAD-PDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGG 222 (259)
Q Consensus 147 ~~~f~~~~--~-fp~~~ll~D-~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg 222 (259)
+++|.+.. + |+ +++| ++++++++||+... |. . ..++..+.
T Consensus 90 ~~~f~~~~~~~~~~---~lsD~~~~~~~~~~gv~~~-------~~-------------------------~-~~g~~~r~ 133 (167)
T PRK00522 90 QKRFCGAEGLENVI---TLSDFRDHSFGKAYGVAIA-------EG-------------------------P-LKGLLARA 133 (167)
T ss_pred HHHHHHhCCCCCce---EeecCCccHHHHHhCCeec-------cc-------------------------c-cCCceeeE
Confidence 99999854 3 45 9999 56699999998531 10 0 01356789
Q ss_pred EEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 223 MFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 223 ~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
+|||| +|+|+|.|+..+..+.++++++|+++++
T Consensus 134 tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 134 VFVLDENNKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred EEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 99999 8999999999999999999999999874
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=2e-24 Score=183.54 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=122.6
Q ss_pred CcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHH
Q 024977 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~ 148 (259)
++.+|+.+|+|++.+..| .++++++.|+ ++||+|||+.|||.|..|+++|++.+++|+++|+++++||.++.+..+
T Consensus 1 ~~~vG~~aP~F~~~~~~g-~v~l~d~~gk---~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~ 76 (202)
T PRK13190 1 PVKLGQKAPDFTVNTTKG-PIDLSKYKGK---WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHI 76 (202)
T ss_pred CCCCCCCCCCcEEecCCC-cEeHHHhCCC---EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 367999999999999887 6999999875 788999999999999999999999999999999999999999988877
Q ss_pred HHHh------h--CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCcccc
Q 024977 149 ILAE------R--LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQ 220 (259)
Q Consensus 149 ~f~~------~--~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
+|.+ + ++|| +++|++++++++||+.... .+..+
T Consensus 77 ~w~~~~~~~~g~~~~fP---ll~D~~~~ia~~ygv~~~~------------------------------------~g~~~ 117 (202)
T PRK13190 77 AWLRDIEERFGIKIPFP---VIADIDKELAREYNLIDEN------------------------------------SGATV 117 (202)
T ss_pred HHHHhHHHhcCCCceEE---EEECCChHHHHHcCCcccc------------------------------------CCcEE
Confidence 7753 2 4688 9999999999999984210 02347
Q ss_pred CeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 221 GGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 221 gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
|++|||| +|+|+|.+.......+ +++|+++++.+
T Consensus 118 p~~fiId~~G~I~~~~~~~~~~gr-~~~ellr~l~~ 152 (202)
T PRK13190 118 RGVFIIDPNQIVRWMIYYPAETGR-NIDEIIRITKA 152 (202)
T ss_pred eEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHH
Confidence 9999999 8999999987776654 99999998865
No 8
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.92 E-value=2.7e-24 Score=184.20 Aligned_cols=145 Identities=18% Similarity=0.201 Sum_probs=124.6
Q ss_pred cccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHH
Q 024977 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (259)
Q Consensus 70 ~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~ 149 (259)
..+|+.+|+|++.+.+|+.+.++++.|+ ++||+|||+.|||.|..|++.|++++++|+++|++|++||.++.+.+++
T Consensus 2 ~~~Gd~aPdF~l~t~~G~~~~~~~~~Gk---~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~ 78 (215)
T PRK13599 2 KLLGEKFPSMEVVTTQGVKRLPEDYAGK---WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIK 78 (215)
T ss_pred CCCCCCCCCCEeECCCCcEecHHHHCCC---eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 3689999999999999998888899875 7899999999999999999999999999999999999999999988888
Q ss_pred HHh--------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccC
Q 024977 150 LAE--------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQG 221 (259)
Q Consensus 150 f~~--------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 221 (259)
|.+ +++|| |++|++++++++||+... . . +....|
T Consensus 79 w~~~i~~~~~~~i~fP---il~D~~~~va~~yg~~~~--------~-------------------------~--~~~~~R 120 (215)
T PRK13599 79 WVEWIKDNTNIAIPFP---VIADDLGKVSNQLGMIHP--------G-------------------------K--GTNTVR 120 (215)
T ss_pred HHHhHHHhcCCCCcee---EEECCCchHHHHcCCCcc--------C-------------------------C--CCceee
Confidence 764 46888 999999999999998431 0 0 123578
Q ss_pred eEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhccC
Q 024977 222 GMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCKV 256 (259)
Q Consensus 222 g~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~~ 256 (259)
++|||| +|+|++.++.+....+ ++++||+++.+.
T Consensus 121 ~tfIID~dG~Ir~~~~~p~~~gr-~~~eilr~l~~l 155 (215)
T PRK13599 121 AVFIVDDKGTIRLIMYYPQEVGR-NVDEILRALKAL 155 (215)
T ss_pred EEEEECCCCEEEEEEEcCCCCCC-CHHHHHHHHHHh
Confidence 999999 8999999986665554 999999998653
No 9
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.92 E-value=4.2e-24 Score=179.25 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=123.3
Q ss_pred cccCCCCCCcEEec---CCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHH
Q 024977 70 ANVGDLLGDFSIFT---AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (259)
Q Consensus 70 ~~vG~~aPdf~l~d---~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~ 146 (259)
..+|+++|+|+... -+.+.++|+++.|+ ++||+|||+.|||.|..|++.|++.+++|++.|+++++||.++++.
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk---~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~ 78 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGR---WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFT 78 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCC---eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHH
Confidence 56899999999776 34467788899986 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHh------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCcccc
Q 024977 147 AQILAE------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQ 220 (259)
Q Consensus 147 ~~~f~~------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
+++|++ +++|| +++|++++++++||+.... ..+..
T Consensus 79 ~~a~~~~~~~~~~l~fp---llsD~~~~ia~~ygv~~~~------------------------------------~g~~~ 119 (187)
T PRK10382 79 HKAWHSSSETIAKIKYA---MIGDPTGALTRNFDNMRED------------------------------------EGLAD 119 (187)
T ss_pred HHHHHHhhccccCCcee---EEEcCchHHHHHcCCCccc------------------------------------CCcee
Confidence 999985 46788 9999999999999984310 02346
Q ss_pred CeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 221 GGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 221 gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
|++|||| +|+|+|.|+......+ +++|+|+++++
T Consensus 120 r~tfIID~~G~I~~~~~~~~~~~~-~~~eil~~l~a 154 (187)
T PRK10382 120 RATFVVDPQGIIQAIEVTAEGIGR-DASDLLRKIKA 154 (187)
T ss_pred eEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHh
Confidence 8999999 8999999997765554 99999998865
No 10
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.92 E-value=7.6e-24 Score=169.67 Aligned_cols=138 Identities=15% Similarity=0.242 Sum_probs=120.5
Q ss_pred ccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHH
Q 024977 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (259)
Q Consensus 71 ~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f 150 (259)
++|+.+|+|++.|.+|+.++|+++.|+ ++||+||+..|||.|+.+++.|+++++++ .|+.+|+|+.++.+.+++|
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~~gk---~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~ 75 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADFAGK---VKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRW 75 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHhCCC---eEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHH
Confidence 379999999999999999999999886 88888888778999999999999999987 4899999999999889999
Q ss_pred HhhC---CCCCCCcccCCc-hHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEE
Q 024977 151 AERL---PFPMDCLYADPD-RKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVF 226 (259)
Q Consensus 151 ~~~~---~fp~~~ll~D~~-~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVi 226 (259)
.+.+ +|+ +++|++ +++.++||+.... .....|++|||
T Consensus 76 ~~~~~~~~~~---~l~D~~~~~~~~~~gv~~~~------------------------------------~~~~~~~~~ii 116 (143)
T cd03014 76 CGAEGVDNVT---TLSDFRDHSFGKAYGVLIKD------------------------------------LGLLARAVFVI 116 (143)
T ss_pred HHhcCCCCce---EeecCcccHHHHHhCCeecc------------------------------------CCccceEEEEE
Confidence 8843 577 899996 9999999985310 02346799999
Q ss_pred e-CCeEEEEEecCCCCCCCCHHHHHHH
Q 024977 227 K-GKQLLYARKDEGTGDHASLDDVFDI 252 (259)
Q Consensus 227 d-~g~V~y~~~~~~~~d~~~~~~iL~a 252 (259)
| +|+|+|.|+..+..+.|+++++|++
T Consensus 117 d~~G~I~~~~~~~~~~~~~~~~~~~~~ 143 (143)
T cd03014 117 DENGKVIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred cCCCeEEEEEECCCcccCCCHHHHhhC
Confidence 9 8999999999999999999999863
No 11
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.91 E-value=9.6e-24 Score=184.86 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=123.7
Q ss_pred CCCcccCCCCCCcEEec-CCC--CeEecccc-cccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 67 EFPANVGDLLGDFSIFT-AAG--EPVLFKDL-WDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 67 ~~~~~vG~~aPdf~l~d-~~G--~~v~lsdl-~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
..++.+|+.+|||++.+ .+| +.++++++ .++ ++||+|||+.|||.|..|++.|++.+++|++.|++|++||.|
T Consensus 65 ~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk---~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D 141 (261)
T PTZ00137 65 VTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDS---YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD 141 (261)
T ss_pred cccccCCCCCCCCEeecccCCCceEEeHHHHcCCC---eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 34567999999999987 455 46899998 554 899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHh---------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCC
Q 024977 143 TPNKAQILAE---------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDD 213 (259)
Q Consensus 143 ~~~~~~~f~~---------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~ 213 (259)
+++.+++|++ +++|| +++|++++++++||+...
T Consensus 142 s~~~h~aw~~~~~~~~g~~~l~fP---lLsD~~~~iakayGv~~~----------------------------------- 183 (261)
T PTZ00137 142 SPFSHKAWKELDVRQGGVSPLKFP---LFSDISREVSKSFGLLRD----------------------------------- 183 (261)
T ss_pred CHHHHHHHHhhhhhhccccCcceE---EEEcCChHHHHHcCCCCc-----------------------------------
Confidence 9988888874 36788 999999999999998431
Q ss_pred CCCccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 214 RSSVLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 214 ~~~~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
.++.+|++|||| +|+|+|.+.......+ +++|+|+++..
T Consensus 184 --~g~a~R~tFIID~dG~I~~~~~~~~~~gr-~v~eiLr~l~a 223 (261)
T PTZ00137 184 --EGFSHRASVLVDKAGVVKHVAVYDLGLGR-SVDETLRLFDA 223 (261)
T ss_pred --CCceecEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHH
Confidence 024578999999 8999999976655555 99999998854
No 12
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.91 E-value=1.6e-23 Score=173.54 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=121.7
Q ss_pred cCCCCCCcEEecCCC----CeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHH
Q 024977 72 VGDLLGDFSIFTAAG----EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (259)
Q Consensus 72 vG~~aPdf~l~d~~G----~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~ 147 (259)
+|+++|+|++.+.+| +.++|+++.|+ ++||+||++.|||.|..+++.|++++++|.+.|+++++|+.++.+..
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk---~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGK---WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCC---EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHH
Confidence 689999999999877 79999999886 89999999999999999999999999999999999999999988776
Q ss_pred HHHHhh---------CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCcc
Q 024977 148 QILAER---------LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVL 218 (259)
Q Consensus 148 ~~f~~~---------~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (259)
++|++. ++|+ +++|++++++++||+.... ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~f~---~l~D~~~~~~~~~gv~~~~------------------------------------~~~ 118 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFP---LLADPKKKISRDYGVLDEE------------------------------------EGV 118 (173)
T ss_pred HHHHHhhhhhCCccCccee---EEECCchhHHHHhCCcccc------------------------------------CCc
Confidence 777652 6788 9999999999999985320 024
Q ss_pred ccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhccC
Q 024977 219 QQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCKV 256 (259)
Q Consensus 219 ~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~~ 256 (259)
.+|.+|||| +|+|+|.|+...+.. ++.++|++.+++.
T Consensus 119 ~~p~~~lID~~G~I~~~~~~~~~~~-~~~~~il~~l~~~ 156 (173)
T cd03015 119 ALRGTFIIDPEGIIRHITVNDLPVG-RSVDETLRVLDAL 156 (173)
T ss_pred eeeEEEEECCCCeEEEEEecCCCCC-CCHHHHHHHHHHh
Confidence 467999999 899999999876654 4789999998654
No 13
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.91 E-value=1.7e-23 Score=177.93 Aligned_cols=144 Identities=24% Similarity=0.377 Sum_probs=121.8
Q ss_pred cCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHH
Q 024977 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (259)
Q Consensus 72 vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~ 151 (259)
+|+.+|+|++.+.+|+ ++++++.|+ +++||+|||+.|||.|..|+++|++++++|++.|++|++||.++.+.+++|.
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~--k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGD--SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCC--CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 5899999999998884 899999884 3789999999999999999999999999999999999999999988877776
Q ss_pred h--------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeE
Q 024977 152 E--------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGM 223 (259)
Q Consensus 152 ~--------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~ 223 (259)
+ +++|| +++|++++++++||+.... .+.....+++
T Consensus 78 ~~i~~~~~~~~~fp---il~D~~~~ia~~yg~~~~~----------------------------------~~~~~~~r~~ 120 (203)
T cd03016 78 EDIEEYTGVEIPFP---IIADPDREVAKLLGMIDPD----------------------------------AGSTLTVRAV 120 (203)
T ss_pred hhHHHhcCCCCcee---EEECchHHHHHHcCCcccc----------------------------------CCCCceeeEE
Confidence 4 46788 9999999999999985310 0012457899
Q ss_pred EEEe-CCeEEEEEecCCCCCCCCHHHHHHHhccC
Q 024977 224 FVFK-GKQLLYARKDEGTGDHASLDDVFDICCKV 256 (259)
Q Consensus 224 fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~~ 256 (259)
|||| +|+|+|.++......+ +++++++++.+.
T Consensus 121 fiID~~G~I~~~~~~~~~~gr-~~~ell~~l~~l 153 (203)
T cd03016 121 FIIDPDKKIRLILYYPATTGR-NFDEILRVVDAL 153 (203)
T ss_pred EEECCCCeEEEEEecCCCCCC-CHHHHHHHHHHH
Confidence 9999 8999999987655544 799999988653
No 14
>PRK15000 peroxidase; Provisional
Probab=99.90 E-value=5.6e-23 Score=174.37 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=118.7
Q ss_pred ccCCCCCCcEEecC--CCCe---Eecccc-cccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 71 NVGDLLGDFSIFTA--AGEP---VLFKDL-WDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 71 ~vG~~aPdf~l~d~--~G~~---v~lsdl-~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
.+|+++|+|++.+. +|+. ++|+++ .|+ ++||+||++.|||.|..|+++|++.+++|+++|++|++||.++.
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk---~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGK---TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCC---EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 48999999999985 3554 455555 454 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh---------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCC
Q 024977 145 NKAQILAE---------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRS 215 (259)
Q Consensus 145 ~~~~~f~~---------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~ 215 (259)
+.+++|.+ +++|| +++|+++++++.||+....
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fp---llsD~~~~ia~~ygv~~~~------------------------------------ 120 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYA---MVADVKREIQKAYGIEHPD------------------------------------ 120 (200)
T ss_pred HHHHHHHhhHHHhCCccccCce---EEECCCcHHHHHcCCccCC------------------------------------
Confidence 88888754 14788 9999999999999985310
Q ss_pred CccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 216 SVLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 216 ~~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
.++.+|++|||| +|+|++.+.+.....| +++|+|+++++
T Consensus 121 ~g~~~r~tfiID~~G~I~~~~~~~~~~gr-~~~eilr~l~a 160 (200)
T PRK15000 121 EGVALRGSFLIDANGIVRHQVVNDLPLGR-NIDEMLRMVDA 160 (200)
T ss_pred CCcEEeEEEEECCCCEEEEEEecCCCCCC-CHHHHHHHHHH
Confidence 024579999999 8999999998776665 99999998864
No 15
>PRK13189 peroxiredoxin; Provisional
Probab=99.90 E-value=6.9e-23 Score=176.45 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=122.5
Q ss_pred CcccCCCCCCcEEecCCCCeEecccc-cccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHH
Q 024977 69 PANVGDLLGDFSIFTAAGEPVLFKDL-WDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~G~~v~lsdl-~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~ 147 (259)
++.+|+.+|+|++.+.+|+ ++++++ .|+ ++||+|||+.|||.|..|+++|++.+++|++.|++|++||.++.+.+
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk---~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h 83 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGK---WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH 83 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCC---eEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 5679999999999998886 778775 664 79999999999999999999999999999999999999999999888
Q ss_pred HHHHh--------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccc
Q 024977 148 QILAE--------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQ 219 (259)
Q Consensus 148 ~~f~~--------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (259)
++|.+ +++|| +++|++++++++||+.... . +...
T Consensus 84 ~aw~~~~~~~~g~~i~fP---llsD~~~~ia~~ygv~~~~---------------------------------~--~~~~ 125 (222)
T PRK13189 84 IKWVEWIKEKLGVEIEFP---IIADDRGEIAKKLGMISPG---------------------------------K--GTNT 125 (222)
T ss_pred HHHHHhHHHhcCcCccee---EEEcCccHHHHHhCCCccc---------------------------------c--CCCc
Confidence 88765 25788 9999999999999985310 0 0125
Q ss_pred cCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 220 QGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 220 ~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
.|++|||| +|+|++.++......+ +++|+|+++.+
T Consensus 126 ~r~tfIID~~G~Ir~~~~~~~~~gr-~~~eilr~l~a 161 (222)
T PRK13189 126 VRAVFIIDPKGIIRAILYYPQEVGR-NMDEILRLVKA 161 (222)
T ss_pred eeEEEEECCCCeEEEEEecCCCCCC-CHHHHHHHHHH
Confidence 88999999 8999999987776555 79999998864
No 16
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.90 E-value=3.5e-23 Score=168.89 Aligned_cols=133 Identities=20% Similarity=0.293 Sum_probs=114.4
Q ss_pred cCCCCCCcEEecCC---CCeEecccc-cccCCCcEEEEEEcCCCCHhhHHH-HHHHHHHHHHHhhCCc-EEEEEeCCChH
Q 024977 72 VGDLLGDFSIFTAA---GEPVLFKDL-WDQNEGVAVVALLRHFGCPCCWEL-ASALKESKARFDSAGV-KLIAVGVGTPN 145 (259)
Q Consensus 72 vG~~aPdf~l~d~~---G~~v~lsdl-~~~~~~~vvL~f~r~~~Cp~C~~~-l~~L~~~~~~~~~~gv-~vv~Vs~~~~~ 145 (259)
+|+++|+|++.+.+ |+.++|+++ .++ ++||+|||+.|||.|..| ++.|++.+++|++.|+ .|++||.++++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk---~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~ 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGK---KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPF 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCC---cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHH
Confidence 68999999999975 999999995 664 899999999999999999 9999999999999999 69999999999
Q ss_pred HHHHHHhh--C--CCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccC
Q 024977 146 KAQILAER--L--PFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQG 221 (259)
Q Consensus 146 ~~~~f~~~--~--~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 221 (259)
.+++|+++ + +|| +++|++++++++||+..... ..+ .+....+
T Consensus 78 ~~~~~~~~~~~~~~f~---lLsD~~~~~~~~ygv~~~~~-----------------------------~~~--~~~~~~R 123 (155)
T cd03013 78 VMKAWGKALGAKDKIR---FLADGNGEFTKALGLTLDLS-----------------------------AAG--GGIRSKR 123 (155)
T ss_pred HHHHHHHhhCCCCcEE---EEECCCHHHHHHcCCCcccc-----------------------------ccC--Ccceeee
Confidence 99999983 4 678 99999999999999964210 000 0124578
Q ss_pred eEEEEeCCeEEEEEecCCCC
Q 024977 222 GMFVFKGKQLLYARKDEGTG 241 (259)
Q Consensus 222 g~fVid~g~V~y~~~~~~~~ 241 (259)
++||||+|+|+|.|+..+..
T Consensus 124 ~~fiId~g~I~~~~~~~~~~ 143 (155)
T cd03013 124 YALIVDDGKVKYLFVEEDPG 143 (155)
T ss_pred EEEEECCCEEEEEEEecCCC
Confidence 99999999999999988874
No 17
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.90 E-value=9.4e-23 Score=158.73 Aligned_cols=121 Identities=26% Similarity=0.506 Sum_probs=109.7
Q ss_pred cCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHH
Q 024977 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (259)
Q Consensus 72 vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~ 151 (259)
+|+++|+|++.+.+|+.++++++.++ ++||+||+..|||.|..++++|++++.++++.|+++++|+.++.+.+++|.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk---~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGK---PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTS---EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCC---cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 69999999999999999999999775 888888888899999999999999999999999999999999999999998
Q ss_pred h--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-C
Q 024977 152 E--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK-G 228 (259)
Q Consensus 152 ~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid-~ 228 (259)
+ +++|| +++|+++++++.||+.... +..+.|++|||| +
T Consensus 78 ~~~~~~~~---~~~D~~~~~~~~~~~~~~~------------------------------------~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 78 EEYGLPFP---VLSDPDGELAKAFGIEDEK------------------------------------DTLALPAVFLIDPD 118 (124)
T ss_dssp HHHTCSSE---EEEETTSHHHHHTTCEETT------------------------------------TSEESEEEEEEETT
T ss_pred hhhccccc---cccCcchHHHHHcCCcccc------------------------------------CCceEeEEEEECCC
Confidence 8 57888 9999999999999985420 246789999999 8
Q ss_pred CeEEEE
Q 024977 229 KQLLYA 234 (259)
Q Consensus 229 g~V~y~ 234 (259)
|+|+|.
T Consensus 119 g~I~~~ 124 (124)
T PF00578_consen 119 GKIRYA 124 (124)
T ss_dssp SBEEEE
T ss_pred CEEEeC
Confidence 999985
No 18
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.89 E-value=2.7e-22 Score=162.82 Aligned_cols=149 Identities=24% Similarity=0.339 Sum_probs=123.2
Q ss_pred CcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHH
Q 024977 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~ 148 (259)
.+.+|+.+|+|++.|.+|+.++++++.|+ ++||+||+..|||.|..+++.|++.++++++.|+++|+|+.++.+.++
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk---~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQ---RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCC---CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 56789999999999999999999999886 788888878899999999999999999999999999999999999999
Q ss_pred HHHh--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEE
Q 024977 149 ILAE--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVF 226 (259)
Q Consensus 149 ~f~~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVi 226 (259)
+|.+ +++|| +++|+++.++++||+..... .. +. +.....+.+|||
T Consensus 80 ~~~~~~~~~~~---~l~D~~~~~~~~~gv~~~~~--~~---------------------------~~-~~~~~~~~~~li 126 (154)
T PRK09437 80 RFAEKELLNFT---LLSDEDHQVAEQFGVWGEKK--FM---------------------------GK-TYDGIHRISFLI 126 (154)
T ss_pred HHHHHhCCCCe---EEECCCchHHHHhCCCcccc--cc---------------------------cc-cccCcceEEEEE
Confidence 9988 46777 89999999999999853210 00 00 011123678999
Q ss_pred e-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 227 K-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 227 d-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
| +|+|++.|.+....++ .+++|++++.
T Consensus 127 d~~G~i~~~~~g~~~~~~--~~~~~~~~~~ 154 (154)
T PRK09437 127 DADGKIEHVFDKFKTSNH--HDVVLDYLKE 154 (154)
T ss_pred CCCCEEEEEEcCCCcchh--HHHHHHHHhC
Confidence 9 8999999988766654 8889988763
No 19
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.89 E-value=4.1e-22 Score=160.03 Aligned_cols=141 Identities=22% Similarity=0.395 Sum_probs=114.3
Q ss_pred ccCCCCCCcEEec--CCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHH
Q 024977 71 NVGDLLGDFSIFT--AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (259)
Q Consensus 71 ~vG~~aPdf~l~d--~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~ 148 (259)
++|+++|+|++.+ .+|+.++++++.|+ ++||.||...|||+|+.+++.|.++++++++.|+++|+|+.++...+.
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk---~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~ 77 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGK---PVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVR 77 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTS---EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCC---eEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHH
Confidence 5899999999966 99999999998885 656655544499999999999999999999999999999998877788
Q ss_pred HHHh--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEE
Q 024977 149 ILAE--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVF 226 (259)
Q Consensus 149 ~f~~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVi 226 (259)
+|.+ ..+|+ ++.|++++++++||+.... +. +..+..|.+|||
T Consensus 78 ~~~~~~~~~~~---~~~D~~~~~~~~~~~~~~~------~~---------------------------~~~~~~P~~~lI 121 (146)
T PF08534_consen 78 EFLKKYGINFP---VLSDPDGALAKALGVTIME------DP---------------------------GNGFGIPTTFLI 121 (146)
T ss_dssp HHHHHTTTTSE---EEEETTSHHHHHTTCEEEC------CT---------------------------TTTSSSSEEEEE
T ss_pred HHHHhhCCCce---EEechHHHHHHHhCCcccc------cc---------------------------ccCCeecEEEEE
Confidence 8887 46777 8999999999999985321 00 012678999999
Q ss_pred e-CCeEEEEEecCCCCCCCCHHHHH
Q 024977 227 K-GKQLLYARKDEGTGDHASLDDVF 250 (259)
Q Consensus 227 d-~g~V~y~~~~~~~~d~~~~~~iL 250 (259)
| +|+|+|.+...+..+.++++++|
T Consensus 122 d~~G~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 122 DKDGKVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp ETTSBEEEEEESSBTTSHHSHHHHH
T ss_pred ECCCEEEEEEeCCCCCCCCChhhcC
Confidence 9 89999999999984367777665
No 20
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.88 E-value=7.7e-22 Score=167.25 Aligned_cols=145 Identities=11% Similarity=0.140 Sum_probs=122.7
Q ss_pred CcccCCCCCCcEEec----CCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 69 PANVGDLLGDFSIFT----AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d----~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
.+.+|+++|+|++.+ .+|+.++|+++.|+ ++||+||++.||+.|..++.+|++.+++|++.|++||+||.++.
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk---~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGK---WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHHCCC---EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 356899999999665 46789999999986 89999999999999999999999999999999999999999998
Q ss_pred HHHHHHHh---------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCC
Q 024977 145 NKAQILAE---------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRS 215 (259)
Q Consensus 145 ~~~~~f~~---------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~ 215 (259)
+...+|.. .++|| +++|+++++++.||+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~fp---ll~D~~~~ia~~ygv~~~~------------------------------------ 122 (199)
T PTZ00253 82 YAHLQWTLQERKKGGLGTMAIP---MLADKTKSIARSYGVLEEE------------------------------------ 122 (199)
T ss_pred HHHHHHHhChHhhCCccccccc---eEECcHhHHHHHcCCcccC------------------------------------
Confidence 87777643 26888 9999999999999984210
Q ss_pred CccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhccC
Q 024977 216 SVLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCKV 256 (259)
Q Consensus 216 ~~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~~ 256 (259)
..+..+++|||| +|+|++.++.... ...+++++|+++.+.
T Consensus 123 ~g~~~r~~fiID~~G~i~~~~~~~~~-~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 123 QGVAYRGLFIIDPKGMLRQITVNDMP-VGRNVEEVLRLLEAF 163 (199)
T ss_pred CCceEEEEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHhh
Confidence 123468999999 8999999997666 456999999998654
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.88 E-value=1.5e-21 Score=155.30 Aligned_cols=136 Identities=22% Similarity=0.371 Sum_probs=114.5
Q ss_pred CCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh-
Q 024977 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE- 152 (259)
Q Consensus 74 ~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~- 152 (259)
+.+|+|++.|.+|+.++++++.|+ ++||+||++.|||.|..+++.|++.++++++.|+++|+|+.++.+.+++|.+
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk---~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGK---PVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCC---cEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 468999999999999999999975 8888888889999999999999999999999999999999999999999998
Q ss_pred -hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-CCe
Q 024977 153 -RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK-GKQ 230 (259)
Q Consensus 153 -~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid-~g~ 230 (259)
+++|| +++|++++++++||+..... .++....|.+|||| +|+
T Consensus 78 ~~~~~~---~l~D~~~~~~~~~gv~~~~~---------------------------------~~~~~~~p~~~lid~~G~ 121 (140)
T cd03017 78 YGLPFP---LLSDPDGKLAKAYGVWGEKK---------------------------------KKYMGIERSTFLIDPDGK 121 (140)
T ss_pred hCCCce---EEECCccHHHHHhCCccccc---------------------------------cccCCcceeEEEECCCCE
Confidence 56777 99999999999999864210 01234568999999 799
Q ss_pred EEEEEecCCCCCCCCHHHHH
Q 024977 231 LLYARKDEGTGDHASLDDVF 250 (259)
Q Consensus 231 V~y~~~~~~~~d~~~~~~iL 250 (259)
|+|.|.+.. ..-+++++|
T Consensus 122 v~~~~~g~~--~~~~~~~~~ 139 (140)
T cd03017 122 IVKVWRKVK--PKGHAEEVL 139 (140)
T ss_pred EEEEEecCC--ccchHHHHh
Confidence 999997666 334455544
No 22
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=4.2e-22 Score=162.70 Aligned_cols=161 Identities=32% Similarity=0.495 Sum_probs=136.9
Q ss_pred ecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCc
Q 024977 82 FTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCL 161 (259)
Q Consensus 82 ~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~l 161 (259)
.|..|+.|.+++||.+ ++.||.|.|+++|..|+++...|.++.+-+++.|+.+|+|.+++..+...|.++..|..+ +
T Consensus 35 l~~rg~~vp~~~L~~~--~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~ge-v 111 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKE--RSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGE-V 111 (197)
T ss_pred hhhcCceeehHHhhhc--CCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCccee-E
Confidence 6789999999999998 599999999999999999999999998889999999999999999999999998888887 9
Q ss_pred ccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCC-CCCccccCeEEEEe-CCeEEEEEecCC
Q 024977 162 YADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDD-RSSVLQQGGMFVFK-GKQLLYARKDEG 239 (259)
Q Consensus 162 l~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~gg~fVid-~g~V~y~~~~~~ 239 (259)
|.|++..+|+.+++++.. ..++.+.. +.+.++++... +.+| +++.+++||+++|. |++|+|.|++++
T Consensus 112 ylD~~~~~Y~~le~k~~~-~g~l~~g~------~~~~~Ka~~~g----v~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~ 180 (197)
T KOG4498|consen 112 YLDPHRGFYKPLEFKRAE-MGFLRPGT------DAAAVKAKAVG----VEGNLEGDGLLSGGVLVVGRGKKILFIHVDKE 180 (197)
T ss_pred EEcCccceechhhhhccc-cccccccc------HHHHHHHhhcc----cCCCcccChHHhCCeEEEecCCeEEEEEecCC
Confidence 999999999999998752 13333332 34444444432 3343 45699999999998 679999999999
Q ss_pred CCCCCCHHHHHHHhccC
Q 024977 240 TGDHASLDDVFDICCKV 256 (259)
Q Consensus 240 ~~d~~~~~~iL~a~~~~ 256 (259)
++||+++++|+++++++
T Consensus 181 ~gD~~~i~~Vl~v~~~~ 197 (197)
T KOG4498|consen 181 TGDHVPIDSVLQVVGKA 197 (197)
T ss_pred CCCCcCHHHHHHHhhcC
Confidence 99999999999999874
No 23
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.87 E-value=1.8e-21 Score=154.78 Aligned_cols=135 Identities=20% Similarity=0.342 Sum_probs=117.0
Q ss_pred CCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhh-
Q 024977 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER- 153 (259)
Q Consensus 75 ~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~- 153 (259)
.+|+|++.|.+|+.++++++.++ ++||+||++.||+.|..+++.|+++++++++.|+++|+|+.++++.+++|.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk---~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGK---WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCC---eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 47999999999999999999775 89999998999999999999999999999999999999999999999999884
Q ss_pred --CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-CCe
Q 024977 154 --LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK-GKQ 230 (259)
Q Consensus 154 --~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid-~g~ 230 (259)
.+|+ +++|+++.+++.||+..... . ++....|.+|||| +|+
T Consensus 78 ~~~~~~---~l~D~~~~~~~~~g~~~~~~--------------------------------~-~~~~~~p~~~lid~~g~ 121 (140)
T cd02971 78 GGLNFP---LLSDPDGEFAKAYGVLIEKS--------------------------------A-GGGLAARATFIIDPDGK 121 (140)
T ss_pred cCCCce---EEECCChHHHHHcCCccccc--------------------------------c-ccCceeEEEEEECCCCc
Confidence 5666 89999999999999864210 0 1245678999999 799
Q ss_pred EEEEEecCCCCCCCCHHHH
Q 024977 231 LLYARKDEGTGDHASLDDV 249 (259)
Q Consensus 231 V~y~~~~~~~~d~~~~~~i 249 (259)
|+|.|...++ +++..+.+
T Consensus 122 i~~~~~~~~~-~~~~~~~~ 139 (140)
T cd02971 122 IRYVEVEPLP-TGRNAEEL 139 (140)
T ss_pred EEEEEecCCC-CCcChHhh
Confidence 9999999998 77776655
No 24
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-21 Score=160.80 Aligned_cols=144 Identities=18% Similarity=0.265 Sum_probs=125.9
Q ss_pred CcccCCCCCCcEEecC-CCC---eEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 69 PANVGDLLGDFSIFTA-AGE---PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~-~G~---~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
++.+|+.+|+|+.... .|+ +++++|+.++ ++||+||+..+.|.|..|+.++++.+++|+++|++|++||.|+.
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gk---w~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~ 78 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGK---WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSV 78 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhcCc---EEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcH
Confidence 4568999999999886 774 9999999986 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh---------CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCC
Q 024977 145 NKAQILAER---------LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRS 215 (259)
Q Consensus 145 ~~~~~f~~~---------~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~ 215 (259)
+.+.+|.+. ++|| |++|++++++++||+... .
T Consensus 79 fsH~aW~~~~~~~~gi~~i~~P---miaD~~~~vs~~ygvl~~--------~---------------------------- 119 (194)
T COG0450 79 FSHKAWKATIREAGGIGKIKFP---MIADPKGEIARAYGVLHP--------E---------------------------- 119 (194)
T ss_pred HHHHHHHhcHHhcCCccceecc---eEEcCchhHHHHcCCccc--------C----------------------------
Confidence 999999862 7899 999999999999999531 1
Q ss_pred CccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 216 SVLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 216 ~~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
.+..++|+|||| +|.|++..+....-.| +++|+|+++.+
T Consensus 120 ~g~a~R~~FIIDp~g~ir~~~v~~~~iGR-n~dEilR~idA 159 (194)
T COG0450 120 EGLALRGTFIIDPDGVIRHILVNPLTIGR-NVDEILRVIDA 159 (194)
T ss_pred CCcceeEEEEECCCCeEEEEEEecCCCCc-CHHHHHHHHHH
Confidence 124688999999 8999999998776433 78888887754
No 25
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3e-19 Score=143.29 Aligned_cols=155 Identities=19% Similarity=0.322 Sum_probs=129.8
Q ss_pred cCCCCCCcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 63 ASATEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 63 ~~~~~~~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
.+.....+++||.+|||+|.|.+|..++|.++.++ +++|++||+..-.|-|..+...+++.|++|++.|.+|+++|.|
T Consensus 56 ~Ssds~~v~~Gd~iPD~tL~dedg~sisLkkit~n--k~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D 133 (211)
T KOG0855|consen 56 VSSDSLKVNKGDAIPDFTLKDEDGKSISLKKITGN--KPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD 133 (211)
T ss_pred ccccceeeecCCcCCCcccccCCCCeeeeeeecCC--CcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC
Confidence 34445688999999999999999999999999997 5999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCe
Q 024977 143 TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGG 222 (259)
Q Consensus 143 ~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg 222 (259)
+....++|....++|+- ||+||.+++.+.||....+ .++++.+.
T Consensus 134 ~s~sqKaF~sKqnlPYh-LLSDpk~e~ik~lGa~k~p-----------------------------------~gg~~~Rs 177 (211)
T KOG0855|consen 134 DSASQKAFASKQNLPYH-LLSDPKNEVIKDLGAPKDP-----------------------------------FGGLPGRS 177 (211)
T ss_pred chHHHHHhhhhccCCee-eecCcchhHHHHhCCCCCC-----------------------------------CCCcccce
Confidence 99999999885555554 9999999999999986431 12456678
Q ss_pred EEEEeCCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 223 MFVFKGKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 223 ~fVid~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
.||+++|.+.-....-...-...+++.++.+..
T Consensus 178 h~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 178 HYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred EEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 999996644445555666667788888877654
No 26
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.80 E-value=1.4e-18 Score=143.57 Aligned_cols=135 Identities=21% Similarity=0.352 Sum_probs=109.5
Q ss_pred CCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------h
Q 024977 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--------P 144 (259)
Q Consensus 73 G~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~--------~ 144 (259)
|+.+|+|++.+.+|+.++++++.+. +++|++||.+|||.|..+++.|+++++++++.++++|+|+.++ +
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~---k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADG---KALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCC---CEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCH
Confidence 6889999999999999999998432 5666666799999999999999999999998999999999864 5
Q ss_pred HHHHHHHh--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCe
Q 024977 145 NKAQILAE--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGG 222 (259)
Q Consensus 145 ~~~~~f~~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg 222 (259)
+.+++|.+ .++|+ ++.|+++.+.+.||+.. .|.
T Consensus 78 ~~~~~~~~~~~~~~~---~l~D~~~~~~~~~~v~~------------------------------------------~P~ 112 (171)
T cd02969 78 ENMKAKAKEHGYPFP---YLLDETQEVAKAYGAAC------------------------------------------TPD 112 (171)
T ss_pred HHHHHHHHHCCCCce---EEECCchHHHHHcCCCc------------------------------------------CCc
Confidence 67888887 45677 89999999998888731 146
Q ss_pred EEEEe-CCeEEEEEecCCC----CCCCCHHHHHHHhcc
Q 024977 223 MFVFK-GKQLLYARKDEGT----GDHASLDDVFDICCK 255 (259)
Q Consensus 223 ~fVid-~g~V~y~~~~~~~----~d~~~~~~iL~a~~~ 255 (259)
+|||| +|+|+|.+...+. ..++..+++.+++.+
T Consensus 113 ~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 150 (171)
T cd02969 113 FFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDA 150 (171)
T ss_pred EEEECCCCeEEEeecccCCcccccccccHHHHHHHHHH
Confidence 89999 8999998765443 245677777776643
No 27
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.78 E-value=2.1e-18 Score=146.31 Aligned_cols=87 Identities=10% Similarity=0.250 Sum_probs=76.8
Q ss_pred ccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--------C
Q 024977 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------G 142 (259)
Q Consensus 71 ~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--------~ 142 (259)
..|..+|+|++.|.+|+.++++++.| ++||++||++|||+|+.+++.|+++++++++.|++||+|+. +
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kG----kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d 89 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKN----KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFP 89 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCC----CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCC
Confidence 45678999999999999999999987 46777788999999999999999999999999999999986 4
Q ss_pred ChHHHHHHHh--hCCCCCCCcccC
Q 024977 143 TPNKAQILAE--RLPFPMDCLYAD 164 (259)
Q Consensus 143 ~~~~~~~f~~--~~~fp~~~ll~D 164 (259)
+.+.+++|.+ +++|| +++|
T Consensus 90 ~~e~~~~f~~~~~~~fp---vl~d 110 (199)
T PTZ00056 90 NTKDIRKFNDKNKIKYN---FFEP 110 (199)
T ss_pred CHHHHHHHHHHcCCCce---eeee
Confidence 5678999988 56788 7876
No 28
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.78 E-value=3.9e-18 Score=142.73 Aligned_cols=86 Identities=15% Similarity=0.277 Sum_probs=73.8
Q ss_pred CCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC--------Ch
Q 024977 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TP 144 (259)
Q Consensus 73 G~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~--------~~ 144 (259)
++.+|+|++.|.+|+.+++++++|+ ++||+++|++|||+|..++|.|+++++++++.|+.||+|+.+ +.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk---~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGK---KAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCC---cEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCH
Confidence 5678999999999999999999986 677777689999999999999999999999999999999864 23
Q ss_pred HHHHHHHh---hCCCCCCCcccC
Q 024977 145 NKAQILAE---RLPFPMDCLYAD 164 (259)
Q Consensus 145 ~~~~~f~~---~~~fp~~~ll~D 164 (259)
+.+.+|.+ +++|| +++|
T Consensus 94 ~~~~~f~~~~~~~~fp---v~~d 113 (183)
T PTZ00256 94 PEIKEYVQKKFNVDFP---LFQK 113 (183)
T ss_pred HHHHHHHHHhcCCCCC---CceE
Confidence 56777753 57788 7865
No 29
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.76 E-value=6.6e-18 Score=146.26 Aligned_cols=133 Identities=11% Similarity=0.177 Sum_probs=98.0
Q ss_pred cccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC-------
Q 024977 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG------- 142 (259)
Q Consensus 70 ~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~------- 142 (259)
...|+.+|+|++.|.+|+.++++++.|+ +||++||++||+.|..+++.|++++++++++|++||+|+.+
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK----~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGK----VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 148 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCC----eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCC
Confidence 3589999999999999999999999874 56666669999999999999999999999999999999963
Q ss_pred -ChHHHHHHH-h--hCCCCCCCcccC--Cch-HHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCC
Q 024977 143 -TPNKAQILA-E--RLPFPMDCLYAD--PDR-KVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRS 215 (259)
Q Consensus 143 -~~~~~~~f~-~--~~~fp~~~ll~D--~~~-~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~ 215 (259)
+.+.+++|. + +++|| ++.| .++ .+...|++... ..+ +..+.
T Consensus 149 ~s~~ei~~f~~~~~g~~fP---vl~~~D~~G~~~~~~y~~l~~----------------------~~~-----~~~g~-- 196 (236)
T PLN02399 149 GSNPEIKQFACTRFKAEFP---IFDKVDVNGPSTAPVYQFLKS----------------------NAG-----GFLGD-- 196 (236)
T ss_pred CCHHHHHHHHHHhcCCCCc---cccccCCCcchhhHHHHHHHH----------------------hcC-----CccCC--
Confidence 456788886 4 56788 7754 444 34444432110 000 00000
Q ss_pred CccccCeEEEEe-CCeEEEEEecC
Q 024977 216 SVLQQGGMFVFK-GKQLLYARKDE 238 (259)
Q Consensus 216 ~~~~~gg~fVid-~g~V~y~~~~~ 238 (259)
.....|-+|||| +|+|++.|...
T Consensus 197 ~i~~~PttfLIDk~GkVv~~~~G~ 220 (236)
T PLN02399 197 LIKWNFEKFLVDKNGKVVERYPPT 220 (236)
T ss_pred ccccCceEEEECCCCcEEEEECCC
Confidence 022356899999 89999999854
No 30
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.76 E-value=1.5e-17 Score=139.98 Aligned_cols=135 Identities=14% Similarity=0.185 Sum_probs=100.9
Q ss_pred CCcccCCCCCCcEEecCCCCeEeccc--ccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 68 FPANVGDLLGDFSIFTAAGEPVLFKD--LWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 68 ~~~~vG~~aPdf~l~d~~G~~v~lsd--l~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
..+.+|+.+|+|+++|.+|+.+++++ +.|+ + +|++||++|||+|+.++|.+++.+.+ .|+++++|+.++++
T Consensus 44 ~~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk---~-vvl~F~atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~ 116 (189)
T TIGR02661 44 HGPDVGDAAPIFNLPDFDGEPVRIGGSIAPGR---P-TLLMFTAPSCPVCDKLFPIIKSIARA---EETDVVMISDGTPA 116 (189)
T ss_pred cCCCCCCcCCCcEecCCCCCEEeccchhcCCC---E-EEEEEECCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHH
Confidence 45789999999999999999999964 4553 4 55555699999999999999998753 57889999988888
Q ss_pred HHHHHHhhCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEE
Q 024977 146 KAQILAERLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFV 225 (259)
Q Consensus 146 ~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fV 225 (259)
.+++|.++.++++. .+. .++++.+.||+. ..|.+|+
T Consensus 117 ~~~~~~~~~~~~~~-~~~-~~~~i~~~y~v~------------------------------------------~~P~~~l 152 (189)
T TIGR02661 117 EHRRFLKDHELGGE-RYV-VSAEIGMAFQVG------------------------------------------KIPYGVL 152 (189)
T ss_pred HHHHHHHhcCCCcc-eee-chhHHHHhccCC------------------------------------------ccceEEE
Confidence 89999985544321 332 455666665542 1456799
Q ss_pred Ee-CCeEEEEEecCCCCCCCCHHHHHHHhccC
Q 024977 226 FK-GKQLLYARKDEGTGDHASLDDVFDICCKV 256 (259)
Q Consensus 226 id-~g~V~y~~~~~~~~d~~~~~~iL~a~~~~ 256 (259)
|| +|+|+|... ...+..++++++++++.
T Consensus 153 ID~~G~I~~~g~---~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 153 LDQDGKIRAKGL---TNTREHLESLLEADREG 181 (189)
T ss_pred ECCCCeEEEccC---CCCHHHHHHHHHHHHcC
Confidence 99 899998643 23345689999988764
No 31
>PLN02412 probable glutathione peroxidase
Probab=99.76 E-value=1e-17 Score=138.21 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC--------ChH
Q 024977 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPN 145 (259)
Q Consensus 74 ~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~--------~~~ 145 (259)
+.+|+|++.|.+|+.++++++.| ++||++||++|||+|+.+++.|+++++++++.|+.|++|+.+ +.+
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~g----k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKG----KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCC----CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 67999999999999999999986 466666679999999999999999999999999999999864 334
Q ss_pred HH-HHHHh--hCCCCCCCccc--CCch-HHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccc
Q 024977 146 KA-QILAE--RLPFPMDCLYA--DPDR-KVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQ 219 (259)
Q Consensus 146 ~~-~~f~~--~~~fp~~~ll~--D~~~-~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (259)
.+ +.|.+ +++|| +++ |+++ ...+.|+.... ... +..+. +...
T Consensus 83 ~~~~~~~~~~~~~fp---vl~~~d~~g~~~~~~~~~~~~--------------------------~~~-~~~~~--~v~~ 130 (167)
T PLN02412 83 EIQQTVCTRFKAEFP---IFDKVDVNGKNTAPLYKYLKA--------------------------EKG-GLFGD--AIKW 130 (167)
T ss_pred HHHHHHHHccCCCCc---eEeEEeeCCCCCCHHHHHHHh--------------------------hCC-CCCCC--CcCC
Confidence 44 44445 57888 776 3553 44444443210 000 00000 1233
Q ss_pred cCeEEEEe-CCeEEEEEecCC
Q 024977 220 QGGMFVFK-GKQLLYARKDEG 239 (259)
Q Consensus 220 ~gg~fVid-~g~V~y~~~~~~ 239 (259)
.|.+|||| +|+|++.|...-
T Consensus 131 ~p~tflId~~G~vv~~~~g~~ 151 (167)
T PLN02412 131 NFTKFLVSKEGKVVQRYAPTT 151 (167)
T ss_pred CCeeEEECCCCcEEEEECCCC
Confidence 67899999 899999997443
No 32
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.75 E-value=2.9e-18 Score=139.18 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=93.4
Q ss_pred CCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC--------ChHHH
Q 024977 76 LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNKA 147 (259)
Q Consensus 76 aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~--------~~~~~ 147 (259)
+|+|++.|.+|+.+++++++|+ +||++||++||| |..+++.|+++++++++.|+++|+|+.+ +.+.+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk----~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGK----VLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCC----EEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 7999999999999999999874 566666799999 9999999999999999999999999863 35778
Q ss_pred HHHHh---hCCCCCCCcccCC--chH-HHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccC
Q 024977 148 QILAE---RLPFPMDCLYADP--DRK-VYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQG 221 (259)
Q Consensus 148 ~~f~~---~~~fp~~~ll~D~--~~~-~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 221 (259)
++|.+ +++|| +++|. ++. .++.|++... .++..++. .....+
T Consensus 77 ~~f~~~~~~~~fp---~~~d~d~~~~~~~~~~~~~~~---------------------------~~p~~~~~--~~~~~~ 124 (152)
T cd00340 77 KEFCETNYGVTFP---MFAKIDVNGENAHPLYKYLKE---------------------------EAPGLLGK--DIKWNF 124 (152)
T ss_pred HHHHHHhcCCCce---eeeeEeccCCCCChHHHHHHh---------------------------cCCCCCCC--cccccc
Confidence 99986 36788 88874 332 3344442100 00000000 122246
Q ss_pred eEEEEe-CCeEEEEEecCC
Q 024977 222 GMFVFK-GKQLLYARKDEG 239 (259)
Q Consensus 222 g~fVid-~g~V~y~~~~~~ 239 (259)
.+|||| +|+|++.|...-
T Consensus 125 ttflId~~G~i~~~~~G~~ 143 (152)
T cd00340 125 TKFLVDRDGEVVKRFAPTT 143 (152)
T ss_pred EEEEECCCCcEEEEECCCC
Confidence 899999 899999998753
No 33
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.74 E-value=5.2e-17 Score=133.68 Aligned_cols=124 Identities=20% Similarity=0.293 Sum_probs=103.6
Q ss_pred CCCcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh-H
Q 024977 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-N 145 (259)
Q Consensus 67 ~~~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~-~ 145 (259)
...+.+|+.+|+|++.+.+|+.++++++.++ +++|.| |++||+.|+.+++.|++.++++.+.++++++|+.++. +
T Consensus 32 ~~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k---~~~l~f-~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~ 107 (173)
T PRK03147 32 KEKVQVGKEAPNFVLTDLEGKKIELKDLKGK---GVFLNF-WGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETEL 107 (173)
T ss_pred ccccCCCCCCCCcEeecCCCCEEeHHHcCCC---EEEEEE-ECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHH
Confidence 4667899999999999999999999998764 555555 5999999999999999999999988999999998754 5
Q ss_pred HHHHHHh--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeE
Q 024977 146 KAQILAE--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGM 223 (259)
Q Consensus 146 ~~~~f~~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~ 223 (259)
.+++|.+ +++|+ ++.|.++++.+.||+.. .|..
T Consensus 108 ~~~~~~~~~~~~~~---~~~d~~~~~~~~~~v~~------------------------------------------~P~~ 142 (173)
T PRK03147 108 AVKNFVNRYGLTFP---VAIDKGRQVIDAYGVGP------------------------------------------LPTT 142 (173)
T ss_pred HHHHHHHHhCCCce---EEECCcchHHHHcCCCC------------------------------------------cCeE
Confidence 6788887 46677 88999999998888621 3578
Q ss_pred EEEe-CCeEEEEEecCC
Q 024977 224 FVFK-GKQLLYARKDEG 239 (259)
Q Consensus 224 fVid-~g~V~y~~~~~~ 239 (259)
|||| +|+|++.+.+..
T Consensus 143 ~lid~~g~i~~~~~g~~ 159 (173)
T PRK03147 143 FLIDKDGKVVKVITGEM 159 (173)
T ss_pred EEECCCCcEEEEEeCCC
Confidence 9998 889998876543
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.74 E-value=2.2e-17 Score=138.39 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=97.7
Q ss_pred CcccCCCCCCcEEecCC--CCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChH
Q 024977 69 PANVGDLLGDFSIFTAA--GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG-TPN 145 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~--G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~-~~~ 145 (259)
...+|+.+|+|++.|.+ |+.++++++.. ++.+|++||++||++|+.++|.|.++. ++|+++++|+.+ +.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~---gk~vvv~FwatwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQ---GKPVLLNVWATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQ 110 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcC---CCEEEEEEECCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHH
Confidence 35689999999999987 47777666632 245666666999999999999998764 468999999975 467
Q ss_pred HHHHHHhh--CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeE
Q 024977 146 KAQILAER--LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGM 223 (259)
Q Consensus 146 ~~~~f~~~--~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~ 223 (259)
.+++|.++ ++||. ++.|+++.+.+.||+. ..|.+
T Consensus 111 ~~~~~~~~~~~~~~~--~~~D~~~~~~~~~gv~------------------------------------------~~P~t 146 (185)
T PRK15412 111 KAISWLKELGNPYAL--SLFDGDGMLGLDLGVY------------------------------------------GAPET 146 (185)
T ss_pred HHHHHHHHcCCCCce--EEEcCCccHHHhcCCC------------------------------------------cCCeE
Confidence 78889884 55662 4789988888777752 13679
Q ss_pred EEEe-CCeEEEEEecCCCCCCCCHHHHHHHh
Q 024977 224 FVFK-GKQLLYARKDEGTGDHASLDDVFDIC 253 (259)
Q Consensus 224 fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~ 253 (259)
|||| +|+|+|.|.+... ..+++++++.+
T Consensus 147 ~vid~~G~i~~~~~G~~~--~~~l~~~i~~~ 175 (185)
T PRK15412 147 FLIDGNGIIRYRHAGDLN--PRVWESEIKPL 175 (185)
T ss_pred EEECCCceEEEEEecCCC--HHHHHHHHHHH
Confidence 9999 8999999986543 33444444443
No 35
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.74 E-value=3.5e-17 Score=126.69 Aligned_cols=111 Identities=35% Similarity=0.702 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHH
Q 024977 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKA 201 (259)
Q Consensus 122 L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~ 201 (259)
|++..+++++.||++|+|+.++++.+++|++..+||++ ||+|+++++|++||+.++...++..+. ....+..+.+.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~-ly~D~~~~lY~~lg~~~~~~~~~~~~~---~~~~~~~~~~~ 77 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP-LYVDPERKLYKALGLKRGLKWSLLPPA---LWSGLSNIVQS 77 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc-EEEeCcHHHHHHhCCccccccCCCchH---HHHHHHHHHHH
Confidence 67788999999999999999999779999986666666 999999999999999987655554332 22224455555
Q ss_pred HhcCcccccCCC--CCCccccCeEEEEe-CCeEEEEEecCC
Q 024977 202 VQNYTIEATPDD--RSSVLQQGGMFVFK-GKQLLYARKDEG 239 (259)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~gg~fVid-~g~V~y~~~~~~ 239 (259)
.++.+ ++++ .++.+|+||+|||| +|+|+|+|++++
T Consensus 78 ~~~~~---~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~~~ 115 (115)
T PF13911_consen 78 AKNGG---IPGNKDQGDGWQLGGTFVFDPGGKVLYEHRDRH 115 (115)
T ss_pred HHHcC---CCCcccCCCceecCeEEEEcCCCeEEEEEecCC
Confidence 55442 3344 46699999999998 789999999875
No 36
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.74 E-value=3.4e-17 Score=132.94 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--------CChHHHH
Q 024977 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------GTPNKAQ 148 (259)
Q Consensus 77 Pdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--------~~~~~~~ 148 (259)
=+|++.|.+|+.++++++.|+ ++|+++|++|||+|..+++.|++++.++++.|+.+++|++ ++.+.++
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk----~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGK----VSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred ccceeECCCCCEecHHHhCCC----EEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 379999999999999999874 4556677999999999999999999999999999999985 5567889
Q ss_pred HHHh---hCCCCCCCcccCC
Q 024977 149 ILAE---RLPFPMDCLYADP 165 (259)
Q Consensus 149 ~f~~---~~~fp~~~ll~D~ 165 (259)
+|++ +++|| +++|.
T Consensus 79 ~f~~~~~~~~fp---~~~d~ 95 (153)
T TIGR02540 79 SFARRNYGVTFP---MFSKI 95 (153)
T ss_pred HHHHHhcCCCCC---ccceE
Confidence 9985 46777 88773
No 37
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.73 E-value=2.6e-17 Score=129.24 Aligned_cols=104 Identities=13% Similarity=0.252 Sum_probs=87.2
Q ss_pred CCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC------CChHHHHHHHh--hCCCC
Q 024977 86 GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV------GTPNKAQILAE--RLPFP 157 (259)
Q Consensus 86 G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~------~~~~~~~~f~~--~~~fp 157 (259)
|+.++++++.| +++|++||++|||+|..+++.|+++++++++.|+.+++|+. ++.+.+++|.+ +++||
T Consensus 13 ~~~v~l~~~~g----k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 13 DKPLSLAQLRG----KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred CCccCHHHhCC----CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 57899999966 35555556999999999999999999999999999999976 35677888888 57788
Q ss_pred CCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-CCeEEEEEe
Q 024977 158 MDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK-GKQLLYARK 236 (259)
Q Consensus 158 ~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid-~g~V~y~~~ 236 (259)
+++|++++++++||+.. .|.+|||| +|+|+|.|.
T Consensus 89 ---~~~D~~~~~~~~~~v~~------------------------------------------~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 89 ---VANDNDYATWRAYGNQY------------------------------------------WPALYLIDPTGNVRHVHF 123 (126)
T ss_pred ---EEECCchHHHHHhCCCc------------------------------------------CCeEEEECCCCcEEEEEe
Confidence 89999999998887621 35889999 899999998
Q ss_pred cC
Q 024977 237 DE 238 (259)
Q Consensus 237 ~~ 238 (259)
.+
T Consensus 124 G~ 125 (126)
T cd03012 124 GE 125 (126)
T ss_pred cC
Confidence 75
No 38
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.72 E-value=7.2e-17 Score=128.57 Aligned_cols=127 Identities=17% Similarity=0.276 Sum_probs=99.1
Q ss_pred CCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHh-hHHHHHHHHHHHHHHhhCC---cEEEEEeCCC----hHH
Q 024977 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFDSAG---VKLIAVGVGT----PNK 146 (259)
Q Consensus 75 ~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~-C~~~l~~L~~~~~~~~~~g---v~vv~Vs~~~----~~~ 146 (259)
.+|+|++.|.+|+.++++++.+ +.+|++|+++||+. |..+++.|+++++++++.| +++++|+.+. ++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~g----k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKG----KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCC----CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 3799999999999999999965 34555556899997 9999999999999998875 9999999854 477
Q ss_pred HHHHHhh--CCCCCCCcccCCc---hHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccC
Q 024977 147 AQILAER--LPFPMDCLYADPD---RKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQG 221 (259)
Q Consensus 147 ~~~f~~~--~~fp~~~ll~D~~---~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 221 (259)
+++|.+. .+|+ ++.|++ +.++++||+..... .. .....+..+.|
T Consensus 77 ~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~g~~~~~~----~~------------------------~~~~~~~~~~~ 125 (142)
T cd02968 77 LKAYAKAFGPGWI---GLTGTPEEIEALAKAFGVYYEKV----PE------------------------DDGDYLVDHSA 125 (142)
T ss_pred HHHHHHHhCCCcE---EEECCHHHHHHHHHHhcEEEEec----CC------------------------CCCceeEeccc
Confidence 8889884 4678 888875 78899999864311 00 00111245678
Q ss_pred eEEEEe-CCeEEEEEe
Q 024977 222 GMFVFK-GKQLLYARK 236 (259)
Q Consensus 222 g~fVid-~g~V~y~~~ 236 (259)
++|||| +|+|++.|.
T Consensus 126 ~~~lid~~G~i~~~~~ 141 (142)
T cd02968 126 AIYLVDPDGKLVRYYG 141 (142)
T ss_pred eEEEECCCCCEEEeec
Confidence 999999 899999885
No 39
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.71 E-value=1.9e-16 Score=131.31 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=90.9
Q ss_pred CcccCCCCCCcEEecCCCC--eEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hH
Q 024977 69 PANVGDLLGDFSIFTAAGE--PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PN 145 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~G~--~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~-~~ 145 (259)
...+|+.+|+|++.|.+|+ .++++++... +.+|++||++|||.|+.+++.+++++ +.|+++++|+.++ .+
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~g---k~vll~F~a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~~ 105 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQG---KPVLLNVWASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQSQ 105 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCC---CEEEEEEECCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCChH
Confidence 3568999999999999987 4454566432 56666667999999999999987765 4589999999754 45
Q ss_pred HHHHHHhh--CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeE
Q 024977 146 KAQILAER--LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGM 223 (259)
Q Consensus 146 ~~~~f~~~--~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~ 223 (259)
..++|.++ ++|+. ++.|+++++.++||+. ..|.+
T Consensus 106 ~~~~~~~~~~~~f~~--v~~D~~~~~~~~~~v~------------------------------------------~~P~~ 141 (173)
T TIGR00385 106 NALKFLKELGNPYQA--ILIDPNGKLGLDLGVY------------------------------------------GAPET 141 (173)
T ss_pred HHHHHHHHcCCCCce--EEECCCCchHHhcCCe------------------------------------------eCCeE
Confidence 56788874 55552 5679998888887652 14689
Q ss_pred EEEe-CCeEEEEEecC
Q 024977 224 FVFK-GKQLLYARKDE 238 (259)
Q Consensus 224 fVid-~g~V~y~~~~~ 238 (259)
|+|| +|+|+|.|.+.
T Consensus 142 ~~id~~G~i~~~~~G~ 157 (173)
T TIGR00385 142 FLVDGNGVILYRHAGP 157 (173)
T ss_pred EEEcCCceEEEEEecc
Confidence 9999 89999999863
No 40
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.2e-16 Score=126.26 Aligned_cols=152 Identities=21% Similarity=0.321 Sum_probs=127.9
Q ss_pred CCCcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHH
Q 024977 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (259)
Q Consensus 67 ~~~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~ 146 (259)
...+..|+.+|+|+..+..|+ +.+.|+.+. .+.||+-.++.+.|.|..|+-++.++.+||+++||++++.|+++.+.
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g~-i~fhd~~gd--SW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVGK-IKFHDYLGD--SWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CCcccccCcCCCccccccccc-eehhhhccc--ceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 456789999999999887776 999999998 49999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----------hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCC
Q 024977 147 AQILAE-----------RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRS 215 (259)
Q Consensus 147 ~~~f~~-----------~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~ 215 (259)
++.|.+ .++|| |+.|++++++-.||+-. |.. .++.+
T Consensus 80 H~~Wi~DIks~~~~~~~~~~yP---IIaD~~rela~~l~MlD--------~~e----------------------~~~~~ 126 (224)
T KOG0854|consen 80 HKDWIKDIKSYAKVKNHSVPYP---IIADPNRELAFLLNMLD--------PEE----------------------KKNIG 126 (224)
T ss_pred HHHHHHHHHHHHhccCCCCCCC---eecCCchhhhhhhcccC--------HhH----------------------cCCCC
Confidence 888865 26788 99999999999999853 210 11223
Q ss_pred CccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 216 SVLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 216 ~~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
.+...+++|||+ +.+|+..+..+....| +.+|||+++-+
T Consensus 127 ~~~T~Ravfvi~pdkKirLs~lYP~ttGR-N~dEiLRvids 166 (224)
T KOG0854|consen 127 DGKTVRAVFVIDPDKKIRLSFLYPSTTGR-NFDEILRVIDS 166 (224)
T ss_pred CCceEEEEEEECCCceEEEEEEcccccCc-CHHHHHHHHHH
Confidence 457788999999 6788888887776654 79999998754
No 41
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.68 E-value=7e-16 Score=120.95 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=90.8
Q ss_pred CCCCCcEEecCCC--CeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC-CChHHHHHH
Q 024977 74 DLLGDFSIFTAAG--EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV-GTPNKAQIL 150 (259)
Q Consensus 74 ~~aPdf~l~d~~G--~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~-~~~~~~~~f 150 (259)
+++|+|+++|.+| +.++++++.++ ++||.|| ++|||.|..+++.|+++..++ ++++|+|+. ++.+.+++|
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk---~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~ 73 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGK---PYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAW 73 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCC---EEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHH
Confidence 3689999999988 88999999874 5555555 999999999999999987653 599999996 456778889
Q ss_pred Hhh--CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-
Q 024977 151 AER--LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK- 227 (259)
Q Consensus 151 ~~~--~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid- 227 (259)
.+. ++|+. ++.|+++.+.+.||+. .+|.+|+||
T Consensus 74 ~~~~~~~~~~--~~~D~~~~~~~~~~v~------------------------------------------~~P~~~~ld~ 109 (127)
T cd03010 74 LARHGNPYAA--VGFDPDGRVGIDLGVY------------------------------------------GVPETFLIDG 109 (127)
T ss_pred HHhcCCCCce--EEECCcchHHHhcCCC------------------------------------------CCCeEEEECC
Confidence 884 45542 6789888888777662 246789999
Q ss_pred CCeEEEEEecCC
Q 024977 228 GKQLLYARKDEG 239 (259)
Q Consensus 228 ~g~V~y~~~~~~ 239 (259)
+|+|++.+.+.-
T Consensus 110 ~G~v~~~~~G~~ 121 (127)
T cd03010 110 DGIIRYKHVGPL 121 (127)
T ss_pred CceEEEEEeccC
Confidence 899999988643
No 42
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.66 E-value=1.4e-15 Score=116.73 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=82.1
Q ss_pred CCcEEecCCCCeEeccccc-ccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhh--
Q 024977 77 GDFSIFTAAGEPVLFKDLW-DQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER-- 153 (259)
Q Consensus 77 Pdf~l~d~~G~~v~lsdl~-~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~-- 153 (259)
|+|++.|.+|+.++++++. ++ ++|| +||++||+.|+.+++.|+++++++. .++.+++|+.++.+..++|.+.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk---~vvl-~F~~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~~ 75 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGR---PTLL-FFLSPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHG 75 (114)
T ss_pred CCceeecCCCCEEEcccccCCC---eEEE-EEECCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHhC
Confidence 7899999999999999998 53 4555 4569999999999999999887764 5788898887778888889884
Q ss_pred C-CCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-CCeE
Q 024977 154 L-PFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK-GKQL 231 (259)
Q Consensus 154 ~-~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid-~g~V 231 (259)
+ .|| ++.| +++.+.||+ ..+|.+|||| +|+|
T Consensus 76 ~~~~p---~~~~--~~~~~~~~~------------------------------------------~~~P~~~vid~~G~v 108 (114)
T cd02967 76 LEAFP---YVLS--AELGMAYQV------------------------------------------SKLPYAVLLDEAGVI 108 (114)
T ss_pred CCCCc---EEec--HHHHhhcCC------------------------------------------CCcCeEEEECCCCeE
Confidence 4 367 4443 334444443 2257889999 8999
Q ss_pred EEEE
Q 024977 232 LYAR 235 (259)
Q Consensus 232 ~y~~ 235 (259)
+|..
T Consensus 109 ~~~~ 112 (114)
T cd02967 109 AAKG 112 (114)
T ss_pred Eecc
Confidence 9864
No 43
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.3e-15 Score=121.00 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=117.9
Q ss_pred CcccCCCCCCcEE---ecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 69 PANVGDLLGDFSI---FTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 69 ~~~vG~~aPdf~l---~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
++.+..++|+|.- .|-.-+.++|+++.|+ .+|++||+..+...|..|+.++++.+++|++.|++|+++|.|+++
T Consensus 3 ~~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gk---yvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~f 79 (196)
T KOG0852|consen 3 MEVVFKPAPDFKGTAVVDGEFKEIKLSDYKGK---YVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVF 79 (196)
T ss_pred ccccCCCCCCcceeEEEcCcceEEeehhhccc---EEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchh
Confidence 3456677799874 4445589999999997 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh------h---CCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCC
Q 024977 146 KAQILAE------R---LPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSS 216 (259)
Q Consensus 146 ~~~~f~~------~---~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (259)
.+.+|+. + +++| |++|.+.++++.|||.... .
T Consensus 80 shlAW~ntprk~gGlg~~~iP---llsD~~~~IsrdyGvL~~~------------------------------------~ 120 (196)
T KOG0852|consen 80 SHLAWINTPRKQGGLGPLNIP---LLSDLNHEISRDYGVLKED------------------------------------E 120 (196)
T ss_pred hhhhHhcCchhhCCcCccccc---eeeccchhhHHhcCceecC------------------------------------C
Confidence 9999976 3 4489 9999999999999995420 2
Q ss_pred ccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 217 VLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 217 ~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
+..++|.|||| +|.++-.-. .+..---+++|+|+.+..
T Consensus 121 G~~lRglfIId~~gi~R~it~-NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 121 GIALRGLFIIDPDGILRQITI-NDLPVGRSVDETLRLVQA 159 (196)
T ss_pred CcceeeeEEEccccceEEeee-cccCCCccHHHHHHHHHH
Confidence 57789999999 565554333 455555678888887754
No 44
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.60 E-value=2.4e-14 Score=136.30 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=95.9
Q ss_pred cccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC------C
Q 024977 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG------T 143 (259)
Q Consensus 70 ~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~------~ 143 (259)
..+++.+|+|++.|.+|+.++++ .+ ++||+.||++||++|+.++|.|++++++++..+++||+|+.+ +
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kG----KpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KD----KPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CC----CEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 56778999999999999999987 33 677777789999999999999999999988789999999863 2
Q ss_pred hHHHHHHHhhCC---CCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCcccc
Q 024977 144 PNKAQILAERLP---FPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQ 220 (259)
Q Consensus 144 ~~~~~~f~~~~~---fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
.+..++|.+.++ || ++.|.++++++.||+. .+
T Consensus 106 ~~~~~~~~~~~~y~~~p---V~~D~~~~lak~fgV~------------------------------------------gi 140 (521)
T PRK14018 106 DGDFQKWYAGLDYPKLP---VLTDNGGTLAQSLNIS------------------------------------------VY 140 (521)
T ss_pred HHHHHHHHHhCCCcccc---eeccccHHHHHHcCCC------------------------------------------Cc
Confidence 344566666544 46 8889999988888763 15
Q ss_pred CeEEEEe-CCeEEEEEecCC
Q 024977 221 GGMFVFK-GKQLLYARKDEG 239 (259)
Q Consensus 221 gg~fVid-~g~V~y~~~~~~ 239 (259)
|.+|||| +|+|++.+.+.-
T Consensus 141 PTt~IIDkdGkIV~~~~G~~ 160 (521)
T PRK14018 141 PSWAIIGKDGDVQRIVKGSI 160 (521)
T ss_pred CeEEEEcCCCeEEEEEeCCC
Confidence 5788998 889999888653
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.58 E-value=3e-14 Score=107.48 Aligned_cols=91 Identities=26% Similarity=0.512 Sum_probs=77.6
Q ss_pred CcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hHHHHHHHhh--
Q 024977 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--PNKAQILAER-- 153 (259)
Q Consensus 78 df~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~--~~~~~~f~~~-- 153 (259)
+|++.+.+|+.++++++.+ +.+|++|++.||+.|...++.|.++..++.+.++.+++|+.+. .+.+++|.++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~----k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~ 76 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKG----KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYG 76 (116)
T ss_pred CccccCCCCCEeehHHcCC----CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcC
Confidence 5788899999999999986 3555555699999999999999999999988899999999987 7888899884
Q ss_pred CCCCCCCcccCCchHHHHHhCC
Q 024977 154 LPFPMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 154 ~~fp~~~ll~D~~~~~~~~~Gv 175 (259)
.+|+ ++.|++.++.+.||+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~ 95 (116)
T cd02966 77 ITFP---VLLDPDGELAKAYGV 95 (116)
T ss_pred CCcc---eEEcCcchHHHhcCc
Confidence 5666 888988888887776
No 46
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.55 E-value=4.9e-14 Score=117.88 Aligned_cols=86 Identities=12% Similarity=0.213 Sum_probs=72.0
Q ss_pred CCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--------CChH
Q 024977 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------GTPN 145 (259)
Q Consensus 74 ~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--------~~~~ 145 (259)
+.+++|++.|.+|+.++|+++.|+ +||+.+|++||++|. +++.|++++++++++|+.|++|+. ++.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GK----vvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGN----VLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCC----EEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 358899999999999999999984 566666899999996 799999999999999999999987 3567
Q ss_pred HHHHHHh---hCCCCCCCcc--cCCch
Q 024977 146 KAQILAE---RLPFPMDCLY--ADPDR 167 (259)
Q Consensus 146 ~~~~f~~---~~~fp~~~ll--~D~~~ 167 (259)
.+++|++ +++|| ++ .|.+|
T Consensus 78 ei~~f~~~~~g~~Fp---v~~k~dvnG 101 (183)
T PRK10606 78 EIKTYCRTTWGVTFP---MFSKIEVNG 101 (183)
T ss_pred HHHHHHHHccCCCce---eEEEEccCC
Confidence 7899986 36788 88 45444
No 47
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.55 E-value=2.1e-14 Score=119.79 Aligned_cols=141 Identities=12% Similarity=0.075 Sum_probs=102.8
Q ss_pred ccCCCCCCcccCCCCCCcEEecC-----CC-----CeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhh
Q 024977 62 RASATEFPANVGDLLGDFSIFTA-----AG-----EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDS 131 (259)
Q Consensus 62 ~~~~~~~~~~vG~~aPdf~l~d~-----~G-----~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~ 131 (259)
++......+.+|+.+|.+++.|- +| +..+.++|.| ++.|+.||+.||+.|+.+.|.|.++ ++
T Consensus 15 ~~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~G----KV~lvn~~Aswc~~c~~e~P~l~~l----~~ 86 (184)
T TIGR01626 15 PSSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAG----KVRVVHHIAGRTSAKEXNASLIDAI----KA 86 (184)
T ss_pred HHHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCC----CEEEEEEEecCCChhhccchHHHHH----HH
Confidence 33444577889999999987764 33 5666677776 6899999999999999999999987 56
Q ss_pred CCcEE------EEEeCCCh-HHHHHHH----h--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHH
Q 024977 132 AGVKL------IAVGVGTP-NKAQILA----E--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEAL 198 (259)
Q Consensus 132 ~gv~v------v~Vs~~~~-~~~~~f~----~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l 198 (259)
+|+.+ ++|+.++. .....|. + +.+||+.-++.|+++.+..+||+..
T Consensus 87 ~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~--------------------- 145 (184)
T TIGR01626 87 AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNS--------------------- 145 (184)
T ss_pred cCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCC---------------------
Confidence 78888 99998863 3444454 3 4566644488999999888888631
Q ss_pred HHHHhcCcccccCCCCCCccccCeE-EEEe-CCeEEEEEecCCCCCCCCHHHHHHHhc
Q 024977 199 RKAVQNYTIEATPDDRSSVLQQGGM-FVFK-GKQLLYARKDEGTGDHASLDDVFDICC 254 (259)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~gg~-fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~ 254 (259)
+|-+ |||| +|+|+|.|.+.-..+ ++++++..+.
T Consensus 146 ---------------------~P~T~fVIDk~GkVv~~~~G~l~~e--e~e~~~~li~ 180 (184)
T TIGR01626 146 ---------------------EDSAIIVLDKTGKVKFVKEGALSDS--DIQTVISLVN 180 (184)
T ss_pred ---------------------CCceEEEECCCCcEEEEEeCCCCHH--HHHHHHHHHH
Confidence 2345 9999 899999999854332 4455555543
No 48
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=9.2e-14 Score=110.29 Aligned_cols=143 Identities=16% Similarity=0.254 Sum_probs=119.4
Q ss_pred CCCCcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 66 TEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 66 ~~~~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
....+++|+++|+|++.+.+.+.+++.++.|+ +.||..|+.--.|.|..+.+.+++...++ .++.++.||.|-++
T Consensus 14 ~g~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk---~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPF 88 (158)
T COG2077 14 KGNEPQVGDKAPDFTLVGKDLNDVSLADFAGK---KKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPF 88 (158)
T ss_pred cCCCCccCCcCCceEEEcCcccceeccccCCc---eEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChh
Confidence 34668899999999999999999999999997 89999999999999999999999988766 45889999999999
Q ss_pred HHHHHHhhCCCCCCCcccCC-chHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEE
Q 024977 146 KAQILAERLPFPMDCLYADP-DRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMF 224 (259)
Q Consensus 146 ~~~~f~~~~~fp~~~ll~D~-~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~f 224 (259)
..++|+...+...-..+||- ++++.++||+...-+ | + -++--+++|
T Consensus 89 Aq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~eg-----p--------------------L--------~gLlARaV~ 135 (158)
T COG2077 89 AQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEG-----P--------------------L--------AGLLARAVF 135 (158)
T ss_pred HHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccc-----c--------------------c--------cCeeeeEEE
Confidence 99999985444422278886 467889999864210 0 1 146678999
Q ss_pred EEe-CCeEEEEEecCCCCCCCCH
Q 024977 225 VFK-GKQLLYARKDEGTGDHASL 246 (259)
Q Consensus 225 Vid-~g~V~y~~~~~~~~d~~~~ 246 (259)
|+| +|+|.|...-++..++|++
T Consensus 136 V~De~g~V~y~elv~eit~ePnY 158 (158)
T COG2077 136 VLDENGKVTYSELVPEITEEPNY 158 (158)
T ss_pred EEcCCCcEEEEEccchhhcCCCC
Confidence 999 7999999999999999974
No 49
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.52 E-value=1.5e-13 Score=106.71 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=71.4
Q ss_pred CCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC--ChHHHHHHHh--
Q 024977 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--TPNKAQILAE-- 152 (259)
Q Consensus 77 Pdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~--~~~~~~~f~~-- 152 (259)
|+|++.|.+|+.+++.++.++ +++|+|| ++||+.|+.+++.|++++++ +++++|+.+ +.+.+++|.+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k---~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGK---PVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceeecCCCCEeeHHHhCCC---EEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 789999999999999998774 5555555 99999999999999998865 567777765 4677888887
Q ss_pred hCCCCCCCcccCCchHHHHHhCC
Q 024977 153 RLPFPMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 153 ~~~fp~~~ll~D~~~~~~~~~Gv 175 (259)
+++|| ++.|+++++.+.|++
T Consensus 72 ~~~~~---~~~d~~~~~~~~~~i 91 (123)
T cd03011 72 GYGFP---VINDPDGVISARWGV 91 (123)
T ss_pred CCCcc---EEECCCcHHHHhCCC
Confidence 46777 888999888888776
No 50
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.50 E-value=1.6e-13 Score=110.65 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=62.6
Q ss_pred CeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC-------CcEEEEEeCCCh-HHHHHHHhhCC--C
Q 024977 87 EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA-------GVKLIAVGVGTP-NKAQILAERLP--F 156 (259)
Q Consensus 87 ~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~-------gv~vv~Vs~~~~-~~~~~f~~~~~--f 156 (259)
+.++++++.| ++|++.||++|||+|+.++|.|.+++.++.+. ++.+|+|+.+.. +..++|.++.+ |
T Consensus 16 ~~~~ls~~kg----k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~ 91 (146)
T cd03008 16 EREIVARLEN----RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKW 91 (146)
T ss_pred ccccHHHhCC----CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCc
Confidence 5678889987 46777777999999999999999999887654 799999998854 45778888554 5
Q ss_pred CCCCcccCCchHHHHHhCC
Q 024977 157 PMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 157 p~~~ll~D~~~~~~~~~Gv 175 (259)
+.-.+..+.++.+.+.||+
T Consensus 92 ~~~p~~~~~~~~l~~~y~v 110 (146)
T cd03008 92 LFLPFEDEFRRELEAQFSV 110 (146)
T ss_pred eeecccchHHHHHHHHcCC
Confidence 3110333345577777766
No 51
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.45 E-value=5e-13 Score=105.32 Aligned_cols=90 Identities=12% Similarity=0.242 Sum_probs=66.6
Q ss_pred EecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC--CcEEEEEeCCChH-HHHHHHhhCC--
Q 024977 81 IFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTPN-KAQILAERLP-- 155 (259)
Q Consensus 81 l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~Vs~~~~~-~~~~f~~~~~-- 155 (259)
+.|.+|+.++++++.++ .||++||++||+.|+.+++.|+++++++++. ++++++|+.+... ..++|.+..+
T Consensus 3 l~~~~G~~v~l~~~~gk----~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 78 (131)
T cd03009 3 LLRNDGGKVPVSSLEGK----TVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWL 78 (131)
T ss_pred ccccCCCCccHHHhCCc----EEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCee
Confidence 56789999999999874 5677777999999999999999999999865 7899999988643 3455555332
Q ss_pred -CCCCCcccCCchHHHHHhCCc
Q 024977 156 -FPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 156 -fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
+|+. ..|.+..+++.||+.
T Consensus 79 ~~~~~--~~~~~~~~~~~~~v~ 98 (131)
T cd03009 79 AVPFS--DRERRSRLNRTFKIE 98 (131)
T ss_pred EcccC--CHHHHHHHHHHcCCC
Confidence 2311 134456677777764
No 52
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=4.8e-13 Score=137.81 Aligned_cols=135 Identities=16% Similarity=0.262 Sum_probs=103.2
Q ss_pred CCcccCCCCCCcEEec--CCCCeEec-ccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC---
Q 024977 68 FPANVGDLLGDFSIFT--AAGEPVLF-KDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--- 141 (259)
Q Consensus 68 ~~~~vG~~aPdf~l~d--~~G~~v~l-sdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--- 141 (259)
....+|+.+|+|+..+ .+|+++++ +++.| ++||+.||++||+.|+.++|.|++++++++++|+.+|+|+.
T Consensus 389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkG----K~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~ 464 (1057)
T PLN02919 389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLKG----KVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF 464 (1057)
T ss_pred hccccCCcCCCCcccccccCCccccchhhcCC----CEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc
Confidence 3456799999999876 68999998 57865 57777778999999999999999999999999999999973
Q ss_pred C---ChHHHHHHHh--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCC
Q 024977 142 G---TPNKAQILAE--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSS 216 (259)
Q Consensus 142 ~---~~~~~~~f~~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (259)
+ +.+.+++|.+ ++.|| ++.|.++++.+.|++.
T Consensus 465 D~~~~~~~~~~~~~~~~i~~p---vv~D~~~~~~~~~~V~---------------------------------------- 501 (1057)
T PLN02919 465 DNEKDLEAIRNAVLRYNISHP---VVNDGDMYLWRELGVS---------------------------------------- 501 (1057)
T ss_pred cccccHHHHHHHHHHhCCCcc---EEECCchHHHHhcCCC----------------------------------------
Confidence 2 2345667766 46777 8899888888877652
Q ss_pred ccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHh
Q 024977 217 VLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDIC 253 (259)
Q Consensus 217 ~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~ 253 (259)
..|..|||| +|+|++.+..+. ....++++++.+
T Consensus 502 --~iPt~ilid~~G~iv~~~~G~~--~~~~l~~~l~~~ 535 (1057)
T PLN02919 502 --SWPTFAVVSPNGKLIAQLSGEG--HRKDLDDLVEAA 535 (1057)
T ss_pred --ccceEEEECCCCeEEEEEeccc--CHHHHHHHHHHH
Confidence 145789998 899999877533 333445555443
No 53
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.6e-13 Score=104.87 Aligned_cols=153 Identities=23% Similarity=0.299 Sum_probs=113.4
Q ss_pred CCCCcccCCCCCC--cEEe-cCC----CCeEecccccccCCCcEEEEEEcCCCCHhhHH-HHHHHHHHHHHHhhCCcE-E
Q 024977 66 TEFPANVGDLLGD--FSIF-TAA----GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWE-LASALKESKARFDSAGVK-L 136 (259)
Q Consensus 66 ~~~~~~vG~~aPd--f~l~-d~~----G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~-~l~~L~~~~~~~~~~gv~-v 136 (259)
...++.+|+.+|+ .++. |.. +.++++++|... +|+||+=.++.+.|.|.. |+|.+.+..++|+++|++ |
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~G--KKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~i 82 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKG--KKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEI 82 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcCC--ceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEE
Confidence 4567889999999 5533 322 338999999764 599999999999999655 999999999999999998 5
Q ss_pred EEEeCCChHHHHHHHhhCCCCC-CCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCC
Q 024977 137 IAVGVGTPNKAQILAERLPFPM-DCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRS 215 (259)
Q Consensus 137 v~Vs~~~~~~~~~f~~~~~fp~-~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~ 215 (259)
+.|+.++++.+++|.+.++-.. -.+++|+++++.+.+|+.......+.
T Consensus 83 icvSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~------------------------------- 131 (171)
T KOG0541|consen 83 ICVSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLL------------------------------- 131 (171)
T ss_pred EEEecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccC-------------------------------
Confidence 5699999999999998553321 13899999999999999764321111
Q ss_pred CccccCeEEEEeCCeEEEEEecCCCCC--CCCHHHHHH
Q 024977 216 SVLQQGGMFVFKGKQLLYARKDEGTGD--HASLDDVFD 251 (259)
Q Consensus 216 ~~~~~gg~fVid~g~V~y~~~~~~~~d--~~~~~~iL~ 251 (259)
+..-.+=..|+++|+|.+..+.++..| .-..+.||.
T Consensus 132 g~RS~R~a~vvengkV~~~nvE~~g~~~t~ssa~~il~ 169 (171)
T KOG0541|consen 132 GVRSRRYALVVENGKVTVVNVEEGGTDFTVSSAEDILK 169 (171)
T ss_pred ccccccEEEEEeCCeEEEEEeccCCCceEEecHHHHhh
Confidence 111222356788999999999888774 333444443
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.41 E-value=2.5e-12 Score=106.92 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=79.1
Q ss_pred ccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHH
Q 024977 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (259)
Q Consensus 71 ~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f 150 (259)
.+....|+|++. +|+.++++++. |++||++|||+|++++|.|+++++++ |+.|++|+.+...
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~--------lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~----- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK--------VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG----- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce--------EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-----
Confidence 455567888885 79999999883 44477999999999999999998875 7999999987543
Q ss_pred HhhCCCCCCCcccC-CchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEEe-C
Q 024977 151 AERLPFPMDCLYAD-PDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVFK-G 228 (259)
Q Consensus 151 ~~~~~fp~~~ll~D-~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid-~ 228 (259)
...|| ++.| .++.+.+.||+. ....|.+|||| +
T Consensus 112 --~~~fP---v~~dd~~~~~~~~~g~~----------------------------------------~~~iPttfLId~~ 146 (181)
T PRK13728 112 --DTAFP---EALPAPPDVMQTFFPNI----------------------------------------PVATPTTFLVNVN 146 (181)
T ss_pred --CCCCc---eEecCchhHHHHHhCCC----------------------------------------CCCCCeEEEEeCC
Confidence 36889 7775 555566666531 12367999999 7
Q ss_pred CeEEE-EEecC
Q 024977 229 KQLLY-ARKDE 238 (259)
Q Consensus 229 g~V~y-~~~~~ 238 (259)
|+++| .|++.
T Consensus 147 G~i~~~~~~G~ 157 (181)
T PRK13728 147 TLEALPLLQGA 157 (181)
T ss_pred CcEEEEEEECC
Confidence 88876 57653
No 55
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.36 E-value=5.3e-12 Score=99.84 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=54.5
Q ss_pred CeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC--CcEEEEEeCCC-hHHHHHHHhhC
Q 024977 87 EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGT-PNKAQILAERL 154 (259)
Q Consensus 87 ~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~Vs~~~-~~~~~~f~~~~ 154 (259)
++++++++.| ++||++||++||+.|+.+++.|+++++++++. ++++++|+.+. .+..++|.++.
T Consensus 8 ~~v~l~~~~G----k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~ 74 (132)
T cd02964 8 GVVPVSALEG----KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM 74 (132)
T ss_pred ccccHHHhCC----CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC
Confidence 5999999987 46777778999999999999999999998875 79999999875 35677888765
No 56
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.1e-11 Score=98.40 Aligned_cols=150 Identities=19% Similarity=0.129 Sum_probs=110.8
Q ss_pred CcccCCCCCCcEEecC------CC-CeEecccccccCCCcEEEEEEcCCCCHhhHH-HHHHHHHHHHHHhhCCcE-EEEE
Q 024977 69 PANVGDLLGDFSIFTA------AG-EPVLFKDLWDQNEGVAVVALLRHFGCPCCWE-LASALKESKARFDSAGVK-LIAV 139 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~------~G-~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~-~l~~L~~~~~~~~~~gv~-vv~V 139 (259)
++.+|+++|+.++... .| ..++-.++-.. +++||+-.++.+.|.|.. |+|.+.+++++|+++||. |+.|
T Consensus 2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~g--KkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cV 79 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKG--KKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCV 79 (165)
T ss_pred ccccCCcCCceEeEEeeccccCCCcccccHHHhcCC--CEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEE
Confidence 4678999999887753 23 45566666654 589999999999999999 999999999999999997 7779
Q ss_pred eCCChHHHHHHHhhCCCC-CCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCcc
Q 024977 140 GVGTPNKAQILAERLPFP-MDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVL 218 (259)
Q Consensus 140 s~~~~~~~~~f~~~~~fp-~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (259)
|.++.+.+.+|.+..+-. .-.++.|.++++.+++|+....+..- + |-.+|.+
T Consensus 80 SVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g-----------------------~----G~RS~RY 132 (165)
T COG0678 80 SVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLG-----------------------F----GVRSWRY 132 (165)
T ss_pred EeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCC-----------------------c----ceeeeeE
Confidence 999999999999844333 11389999999999999976432100 1 0112222
Q ss_pred ccCeEEEEeCCeEEEEEecCCCCC---CCCHHHHHHH
Q 024977 219 QQGGMFVFKGKQLLYARKDEGTGD---HASLDDVFDI 252 (259)
Q Consensus 219 ~~gg~fVid~g~V~y~~~~~~~~d---~~~~~~iL~a 252 (259)
.-||++|.|.+.+..+ +++ ..+.+.+|+.
T Consensus 133 ----smvV~nGvV~~~~iE~-p~~~~~vS~a~~mL~~ 164 (165)
T COG0678 133 ----SMVVENGVVEKLFIEP-PGDPFTVSSADTMLAQ 164 (165)
T ss_pred ----EEEEeCCeEEEEEecC-CCCceeecCHHHHHhc
Confidence 4578899898888876 444 4455555543
No 57
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.14 E-value=7.9e-10 Score=81.95 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=45.5
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHh-hCCcEEEEEeCCCh-HHHHHHHhhCCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFD-SAGVKLIAVGVGTP-NKAQILAERLPFP 157 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~Vs~~~~-~~~~~f~~~~~fp 157 (259)
++++++||++||+.|..+++.|.++++++. ..++++|+|+.+.. +..+++.+..+++
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~ 60 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFP 60 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCC
Confidence 677777789999999999999999999998 77999999999864 5677777655333
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.95 E-value=1e-08 Score=85.13 Aligned_cols=133 Identities=16% Similarity=0.293 Sum_probs=87.2
Q ss_pred cCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCH-hhHHHHHHHHHHHHHHhhC--CcEEEEEeCCC----h
Q 024977 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCP-CCWELASALKESKARFDSA--GVKLIAVGVGT----P 144 (259)
Q Consensus 72 vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp-~C~~~l~~L~~~~~~~~~~--gv~vv~Vs~~~----~ 144 (259)
.....|+|++.|.+|+.++++++.|+ ++|++|-.+.|| .|...+..|+++.+++.+. .++++.||.|+ +
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk----~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGK----WVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTS----EEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCC----eEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 45567899999999999999999885 444455588996 5999999999999988764 68899999874 6
Q ss_pred HHHHHHHhhC--CCCCCCccc--CCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCcccc
Q 024977 145 NKAQILAERL--PFPMDCLYA--DPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQ 220 (259)
Q Consensus 145 ~~~~~f~~~~--~fp~~~ll~--D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
+.+++|.+.+ .|.. +-. +.-.++++.|++..... ....++......+.
T Consensus 104 ~~L~~Y~~~~~~~~~~--ltg~~~~i~~l~~~~~v~~~~~--------------------------~~~~~~~~~~i~Hs 155 (174)
T PF02630_consen 104 EVLKKYAKKFGPDFIG--LTGSREEIEELAKQFGVYYEKV--------------------------PEDKPEGDYQIDHS 155 (174)
T ss_dssp HHHHHHHHCHTTTCEE--EEEEHHHHHHHHHHCTHCEEEE--------------------------ESSSTTSCEEEEES
T ss_pred HHHHHHHHhcCCCcce--eEeCHHHHHHHHHHHHhhhccc--------------------------ccccCCCCceEecc
Confidence 7788888843 3321 111 11244555565543210 00001111125688
Q ss_pred CeEEEEe-CCeEEEEEe
Q 024977 221 GGMFVFK-GKQLLYARK 236 (259)
Q Consensus 221 gg~fVid-~g~V~y~~~ 236 (259)
...|+|| +|+|+-.|.
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 8999999 898887764
No 59
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.92 E-value=6.3e-09 Score=84.64 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=37.7
Q ss_pred CCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 86 GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 86 G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
|+.+++++ .. |++||++|||+|+.++|.|+++++++ |+.+++|+.++.
T Consensus 44 G~~~~l~~-------~~-lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 44 GRHANQDD-------YA-LVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred chhhhcCC-------CE-EEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 66565543 33 66667999999999999999998765 689999998764
No 60
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.73 E-value=5e-07 Score=77.10 Aligned_cols=141 Identities=18% Similarity=0.304 Sum_probs=95.1
Q ss_pred CcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHh-hHHHHHHHHHHHHHHh---hCCcEEEEEeCCC----hHHHHH
Q 024977 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFD---SAGVKLIAVGVGT----PNKAQI 149 (259)
Q Consensus 78 df~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~-C~~~l~~L~~~~~~~~---~~gv~vv~Vs~~~----~~~~~~ 149 (259)
+|++.|.+|+.+++.+++|+ ..|+||-.+.||. |..++..|..+.+++. ...++++.|+.|. ++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk----~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGK----PSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCC----EEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 89999999999999999885 4555555889995 9999999999998887 5567788888864 566777
Q ss_pred HHhhCCCCC--CCcc--cCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEE
Q 024977 150 LAERLPFPM--DCLY--ADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFV 225 (259)
Q Consensus 150 f~~~~~fp~--~~ll--~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fV 225 (259)
|.+ ..|.. .-+- .+...+++++|++....- + .. ....-...+....|+
T Consensus 125 Y~~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v-----~--------------------~~--~~~~y~~~Hs~~~~l 176 (207)
T COG1999 125 YAE-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKV-----P--------------------LD--DSQNYTIDHSAGFYL 176 (207)
T ss_pred Hhc-ccCCCCeeeeeCCHHHHHHHHHHhcceeeec-----c--------------------cC--CCCCceeeeeeEEEE
Confidence 776 22221 0011 122346677777754210 0 00 000112566778999
Q ss_pred Ee-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 226 FK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 226 id-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
+| +|++...+..... .++|++.+++
T Consensus 177 id~~G~~~~~~~~~~~-----~~~i~~~l~~ 202 (207)
T COG1999 177 IDADGRFLGTYDYGEP-----PEEIAADLKK 202 (207)
T ss_pred ECCCCeEEEEecCCCC-----hHHHHHHHHH
Confidence 99 8988887775554 7888777765
No 61
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.47 E-value=4.4e-07 Score=80.58 Aligned_cols=72 Identities=24% Similarity=0.401 Sum_probs=50.9
Q ss_pred CCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCC
Q 024977 86 GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADP 165 (259)
Q Consensus 86 G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~ 165 (259)
.+...++++.++ .+|++|++.||++|+.++|.|+++.+++ |+.|++|+.+.... -.|| .+ +.
T Consensus 156 ~~~~~l~~l~~k----~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~-------~~fp---~~-~~ 217 (271)
T TIGR02740 156 QKDRVMKDLAKK----SGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL-------PGFP---NA-RP 217 (271)
T ss_pred HHHHHHHHhcCC----eEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-------ccCC---cc-cC
Confidence 345677788764 5666667899999999999999998765 68999999876431 1366 33 33
Q ss_pred chHHHHHhCC
Q 024977 166 DRKVYNLLGL 175 (259)
Q Consensus 166 ~~~~~~~~Gv 175 (259)
+..+++.||+
T Consensus 218 d~~la~~~gV 227 (271)
T TIGR02740 218 DAGQAQQLKI 227 (271)
T ss_pred CHHHHHHcCC
Confidence 4445555554
No 62
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-06 Score=68.51 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=66.1
Q ss_pred CCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC--------ChHHH
Q 024977 76 LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNKA 147 (259)
Q Consensus 76 aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~--------~~~~~ 147 (259)
+=||++.+.+|++++|++++| +|||+.--++-|.+-. +...|+.++++++++|..|++.-++ +.+.+
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~G----kVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKG----KVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccceeeccCCCCccHHHhCC----cEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 457999999999999999998 5777777799999988 7789999999999999999998653 45678
Q ss_pred HHHHh---hCCCC
Q 024977 148 QILAE---RLPFP 157 (259)
Q Consensus 148 ~~f~~---~~~fp 157 (259)
++|++ +..||
T Consensus 80 ~~fC~~~YgVtFp 92 (162)
T COG0386 80 AKFCQLNYGVTFP 92 (162)
T ss_pred HHHHHhccCceee
Confidence 99998 56788
No 63
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.43 E-value=2.6e-07 Score=74.22 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=57.5
Q ss_pred EEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhh---CCC
Q 024977 80 SIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER---LPF 156 (259)
Q Consensus 80 ~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~---~~f 156 (259)
++.+.+++...+.+...+ ++.+|++||+.||+.|+..++.|.+++.++.. .+.++.|..+.... ....+. .++
T Consensus 2 ~~~~~~~~~~~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~-~~~~~~~~V~~i 77 (142)
T cd02950 2 SLEQLAASSTPPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKW-LPEIDRYRVDGI 77 (142)
T ss_pred ChHHHhhccCCHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCccc-HHHHHHcCCCCC
Confidence 345566677777766554 46677777799999999999999999988854 47888888775421 122221 245
Q ss_pred CCCCcccCCchHH
Q 024977 157 PMDCLYADPDRKV 169 (259)
Q Consensus 157 p~~~ll~D~~~~~ 169 (259)
|.- ++.|.+|++
T Consensus 78 Pt~-v~~~~~G~~ 89 (142)
T cd02950 78 PHF-VFLDREGNE 89 (142)
T ss_pred CEE-EEECCCCCE
Confidence 533 667776653
No 64
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.31 E-value=1.1e-06 Score=71.00 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=75.7
Q ss_pred cEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC--cEEEEEeCCCh-HHHHHHHh--h
Q 024977 79 FSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTP-NKAQILAE--R 153 (259)
Q Consensus 79 f~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~Vs~~~~-~~~~~f~~--~ 153 (259)
..+...+|..+-.++... |++|.++|.+.|||+|+...|.|.+.|+++++.+ +.||-||.|.. +....|.+ .
T Consensus 15 ~~l~~~~~~~~~~~~~l~---gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~ 91 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQ---GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHH 91 (157)
T ss_pred CeeeccCCccchHhHhhC---CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcC
Confidence 567777888887774443 3799999999999999999999999999998664 67888998864 44666655 2
Q ss_pred CC---CCCCCcccCCchHHHHHhCCcccccccccCCch
Q 024977 154 LP---FPMDCLYADPDRKVYNLLGLYHGVGRTFFNPAS 188 (259)
Q Consensus 154 ~~---fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~ 188 (259)
.+ .| .-.|-..++.+.|++..-+....++|++
T Consensus 92 ~~W~~iP---f~d~~~~~l~~ky~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 92 GDWLAIP---FGDDLIQKLSEKYEVKGIPALVILKPDG 126 (157)
T ss_pred CCeEEec---CCCHHHHHHHHhcccCcCceeEEecCCC
Confidence 22 34 2344568889999987654444455554
No 65
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.30 E-value=2.9e-06 Score=64.11 Aligned_cols=42 Identities=10% Similarity=-0.049 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+.||+.|+++||++|+..+|.|.++.+++ .++.++.|+.+..
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~ 57 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDEN 57 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCC
Confidence 67777778999999999999999999888 5688888887654
No 66
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.25 E-value=8.1e-06 Score=62.48 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=61.4
Q ss_pred CcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hHHHHH
Q 024977 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--------PNKAQI 149 (259)
Q Consensus 78 df~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~--------~~~~~~ 149 (259)
||++.|.+|+.++|++++|+ .++++.. ++-|.+-. +...|+++++++.++|..|++.-++. .+.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gk---v~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGK---VLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTS---EEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCC---EEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 68999999999999999996 5555555 99999999 99999999999999999999986542 345777
Q ss_pred HHh---hCCCC
Q 024977 150 LAE---RLPFP 157 (259)
Q Consensus 150 f~~---~~~fp 157 (259)
|+. ...||
T Consensus 78 ~~~~~~~~~F~ 88 (108)
T PF00255_consen 78 FCKEKFGVTFP 88 (108)
T ss_dssp HHCHCHT-SSE
T ss_pred HHHhccCCccc
Confidence 776 35666
No 67
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.18 E-value=4.1e-06 Score=63.12 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=34.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.+++.|+++||++|+...+.|.+++.++....+.++.|..+.
T Consensus 18 ~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~ 60 (102)
T cd02948 18 GLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT 60 (102)
T ss_pred CeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC
Confidence 5566666799999999999999999888865556677777653
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.17 E-value=1.3e-05 Score=62.43 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHH---HHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALK---ESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~---~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+.||++|+++||++|+...+.+. ++...++ .++.++.|+.+..
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~ 60 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGD 60 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCC
Confidence 56666777999999999998775 4444444 4677777876643
No 69
>PRK09381 trxA thioredoxin; Provisional
Probab=98.07 E-value=7.5e-05 Score=56.50 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+.+++.|++.|||.|+...+.|+++..++.. ++.++.|..+
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~ 62 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID 62 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECC
Confidence 4556666699999999999999999988854 4666666543
No 70
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.05 E-value=5.8e-05 Score=61.34 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.+|+.|+++||+.|+...|.|+++..++...++.++.|..+.
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~ 90 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR 90 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC
Confidence 5667777799999999999999999998876678888888554
No 71
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.04 E-value=1.2e-05 Score=60.57 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=33.4
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
++++|+.|+++||++|+..+|.|.++..++. ++.++.|..+
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 3567777779999999999999999998884 5777777544
No 72
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00017 Score=58.66 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC--------ChHH
Q 024977 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNK 146 (259)
Q Consensus 75 ~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~--------~~~~ 146 (259)
.+=||+..|.+|+.|+|+.++|+ +||+.-=++-|.+-...-.+|+.+++++++.|..|++.-++ +.+.
T Consensus 13 siydf~~~d~~G~~v~l~~yrGk----V~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQYRGK----VVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred ceeeeEEecCCCCCccHHHhCCe----EEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 45679999999999999999984 66666669999999988889999999999999999998653 2345
Q ss_pred HHHHHh---hCCCC
Q 024977 147 AQILAE---RLPFP 157 (259)
Q Consensus 147 ~~~f~~---~~~fp 157 (259)
+..|+. +.+||
T Consensus 89 i~~f~~~r~~~~f~ 102 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFP 102 (171)
T ss_pred HHHHHHhccCCCCc
Confidence 667765 34555
No 73
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.92 E-value=0.00018 Score=55.62 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+.||+.|++.||++|+...|.|.++..++.+. +.++-|..+
T Consensus 15 ~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD 55 (114)
T cd02954 15 KVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID 55 (114)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC
Confidence 56667777999999999999999999887422 455555533
No 74
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.91 E-value=4.1e-05 Score=58.60 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+++|+.|+++||+.|+...|.+.++.++++..++.++.|..+..
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 56777777999999999999999999999876788888876653
No 75
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.88 E-value=0.00015 Score=54.65 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=33.5
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.+|+.|++.||+.|+...+.+.++..++. ..+.++.|..+.
T Consensus 19 ~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~ 60 (109)
T cd03002 19 YTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDE 60 (109)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCc
Confidence 546666669999999999999999988875 357778887765
No 76
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.81 E-value=0.00054 Score=58.07 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=75.5
Q ss_pred CCCCCCcEEecCCCCeEecccccccCCCcEEEEEEc-----CCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHH
Q 024977 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLR-----HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (259)
Q Consensus 73 G~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r-----~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~ 147 (259)
+..-.+..+...+|+ ++|.||-+... -+||..|. ..+||.|...+..+.....-+.+.++.+++||....+++
T Consensus 43 v~v~~~Y~F~g~~G~-v~L~dLF~Gr~-qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i 120 (211)
T PF05988_consen 43 VEVDKDYVFDGPDGP-VSLADLFEGRR-QLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKI 120 (211)
T ss_pred ccCCCCeEEeCCCCc-ccHHHHcCCCc-eEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHH
Confidence 444445667667777 99999987532 34444443 468999999999998888889999999999999999999
Q ss_pred HHHHhh--CCCCCCCcccCCchHHHHHhCC
Q 024977 148 QILAER--LPFPMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 148 ~~f~~~--~~fp~~~ll~D~~~~~~~~~Gv 175 (259)
.+|++. ..|| .+|..+..+-..|++
T Consensus 121 ~afk~rmGW~~p---w~Ss~gs~Fn~D~~~ 147 (211)
T PF05988_consen 121 EAFKRRMGWTFP---WYSSYGSDFNYDFGV 147 (211)
T ss_pred HHHHHhcCCCce---EEEcCCCcccccccc
Confidence 999994 5566 888776666666665
No 77
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.81 E-value=0.00014 Score=62.68 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCCcccCCCCCCcEEecCCCCe-EecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 67 EFPANVGDLLGDFSIFTAAGEP-VLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 67 ~~~~~vG~~aPdf~l~d~~G~~-v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
.....+|..|||..+.+.+|+. .++.|+...+ +|+||.|= ..-||+-...+.+++++.++|.+ -++++.|...
T Consensus 70 ~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~-RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~ 143 (237)
T PF00837_consen 70 FKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGN-RPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIE 143 (237)
T ss_pred ccceeCCCCCCCCceEeeCCCcceeHHHhccCC-CCeEEEcc-cccchHHHHHHHHHHHHHHHhhh-hhheehhhHh
Confidence 3456789999999999999998 9999996432 47777664 55599999999999999999965 3566666543
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.81 E-value=9.5e-05 Score=56.03 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=27.3
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHH---HHhhCCcEEEEEeCCChH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKA---RFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~---~~~~~gv~vv~Vs~~~~~ 145 (259)
+.+|++|+..|||+|+...+.+.+..+ .+ +.++.++.+..+...
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYL-KDDFQVIFVNIDDSR 52 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE-HCECEEEECESHSHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh-hcCeEEEEEecCCcc
Confidence 444555569999999987777775433 23 335777777776544
No 79
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.80 E-value=5.7e-05 Score=56.83 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC--cEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~Vs~~~ 143 (259)
+.+|++|+++||++|+...|.|.++..+++..+ +.+..+..+.
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~ 60 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA 60 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc
Confidence 466777779999999999999999999887654 5555566544
No 80
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.76 E-value=6.1e-05 Score=57.31 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.+|++|++.||+.|+...+.+.++..+++..++.+..|..+.
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 4566666699999999999999999999987778888888765
No 81
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.75 E-value=0.00011 Score=63.86 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHh-hHHHHHHHHHHHHHHhhC-CcE--EEEEeCC----ChHHHH
Q 024977 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFDSA-GVK--LIAVGVG----TPNKAQ 148 (259)
Q Consensus 77 Pdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~-C~~~l~~L~~~~~~~~~~-gv~--vv~Vs~~----~~~~~~ 148 (259)
.+|+|.|.+|+.++-.||.|+ .+|+.|-.++||. |..|+..|....+++++. |+. -|.|++| +++.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gk----w~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGK----WSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccc----eEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHH
Confidence 579999999999999999984 6777778999995 999999999999988755 443 3556665 467777
Q ss_pred HHHhh-----CCCCCCCcccCCchHHHHHhCCccc
Q 024977 149 ILAER-----LPFPMDCLYADPDRKVYNLLGLYHG 178 (259)
Q Consensus 149 ~f~~~-----~~fp~~~ll~D~~~~~~~~~Gv~~~ 178 (259)
+|.+. +++.. -.+.=+++++.|.|+..
T Consensus 196 eY~~eF~pkllGLTG---T~eqvk~vak~yRVYfs 227 (280)
T KOG2792|consen 196 EYVSEFHPKLLGLTG---TTEQVKQVAKKYRVYFS 227 (280)
T ss_pred HHHHhcChhhhcccC---CHHHHHHHHHHhEEeec
Confidence 77763 34442 23444566777777653
No 82
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.74 E-value=5.4e-05 Score=55.82 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
+.+|++|++.||+.|+...+.++++..++.. .+.++.|..+...
T Consensus 13 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~ 56 (96)
T cd02956 13 VPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQP 56 (96)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCH
Confidence 4666666799999999999999999988854 4677778776643
No 83
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.67 E-value=0.00017 Score=53.87 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+.++++|++.||+.|+...+.+.++..+++. .+.+..|..+..
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~ 61 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD 61 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc
Confidence 5666666699999999999999999998864 477888888764
No 84
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.67 E-value=0.0011 Score=51.71 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
..++++|.++|||+|+...|.|.++.++ .++.+.-|..+.
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~ 63 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSEN 63 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCC
Confidence 5666666799999999999999998875 446677776653
No 85
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.64 E-value=8.9e-05 Score=57.47 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=43.3
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh--HHHHHHHhhC-CCCCCCcccCCchHHHHH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP--NKAQILAERL-PFPMDCLYADPDRKVYNL 172 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~--~~~~~f~~~~-~fp~~~ll~D~~~~~~~~ 172 (259)
+.||++|++.||+.|+...+.+.+...... .+..++.|..+.. ...+.|...- .+|.- ++.|++|+..+.
T Consensus 20 kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~-~f~~~~Gk~~~~ 92 (117)
T cd02959 20 KPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRI-LFLDPSGDVHPE 92 (117)
T ss_pred CcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCCCccceE-EEECCCCCCchh
Confidence 556666669999999999999988655432 3445666655432 2223443221 24532 888988776553
No 86
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.60 E-value=0.0002 Score=55.24 Aligned_cols=44 Identities=7% Similarity=0.032 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
+.+|+.|+++||++|+...|.+.++.+++++. +.++.|..+...
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~ 73 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ 73 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence 56666777999999999999999999988643 777788876544
No 87
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.58 E-value=0.0002 Score=53.30 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=35.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
++ |+.|++.||++|+...|.+.++..+++..++.+..|..+...
T Consensus 18 ~~-lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~ 61 (101)
T cd02994 18 EW-MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP 61 (101)
T ss_pred CE-EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH
Confidence 54 466669999999999999999988776667888888776543
No 88
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.58 E-value=0.00023 Score=53.34 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=42.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHH---HHHHHHHhhCCcEEEEEeCCCh-HHHHHHHhh---CCCCCCCcccCC-chH
Q 024977 101 VAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVGTP-NKAQILAER---LPFPMDCLYADP-DRK 168 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~Vs~~~~-~~~~~f~~~---~~fp~~~ll~D~-~~~ 168 (259)
+.+|+.|++.||++|+...+.+ .++...+++ ++.++.|..+.. .....+.+. .++|.- ++.++ +++
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti-~~~~~~~g~ 85 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTY-LFYGPGGEP 85 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEE-EEECCCCCC
Confidence 5666667799999999998877 456666654 788888876542 223444442 244532 55565 444
No 89
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.58 E-value=0.00011 Score=54.56 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=32.9
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhh-CCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~Vs~~~ 143 (259)
+.+++.|++.||+.|+...+.++++...+.+ ..+.++.|..+.
T Consensus 18 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 61 (104)
T cd02997 18 KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK 61 (104)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence 4566666699999999999999999988865 345565666654
No 90
>PRK10996 thioredoxin 2; Provisional
Probab=97.55 E-value=9.6e-05 Score=58.98 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=39.2
Q ss_pred ecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 90 LFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 90 ~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
.+.++..+ ++.++++|++.||+.|+...+.|.++..++.. ++.++.|..+...
T Consensus 44 ~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~ 96 (139)
T PRK10996 44 TLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAER 96 (139)
T ss_pred HHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCH
Confidence 44444443 36777777799999999999999999887653 5777778776543
No 91
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.53 E-value=0.00023 Score=55.49 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=44.6
Q ss_pred cEEEEEEcC-------CCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCchHHHHHh
Q 024977 101 VAVVALLRH-------FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLL 173 (259)
Q Consensus 101 ~vvL~f~r~-------~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~ 173 (259)
+++|.|+ + +||++|+...|.|.++.+++. .++.++-|..+... .+-|++..+...|
T Consensus 23 ~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~~---------------~w~d~~~~~~~~~ 85 (119)
T cd02952 23 PIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDRP---------------YWRDPNNPFRTDP 85 (119)
T ss_pred eEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCcc---------------cccCcchhhHhcc
Confidence 5555554 7 999999999999999988875 35888888877643 4556667777777
Q ss_pred CCc
Q 024977 174 GLY 176 (259)
Q Consensus 174 Gv~ 176 (259)
++.
T Consensus 86 ~I~ 88 (119)
T cd02952 86 KLT 88 (119)
T ss_pred Ccc
Confidence 775
No 92
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.49 E-value=0.0011 Score=50.94 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
..++++|++.||++|+...+.|.++..++ ..++++.|..+.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~ 63 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE 63 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc
Confidence 45777778999999999999999887765 346676666553
No 93
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.46 E-value=0.00038 Score=52.62 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC-----CcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSA-----GVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~-----gv~vv~Vs~~~ 143 (259)
+.+|++|+++||+.|+...+.+.++..++++. .+.+..|..+.
T Consensus 19 ~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~ 66 (108)
T cd02996 19 ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK 66 (108)
T ss_pred CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 56777777999999999999999988877532 25555566554
No 94
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.45 E-value=0.00037 Score=51.63 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhh--CCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDS--AGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~Vs~~~~ 144 (259)
+ +|+.|++.||+.|+...+.+++++.+++. ..+.++.|..+..
T Consensus 18 ~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~ 62 (102)
T cd03005 18 N-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH 62 (102)
T ss_pred C-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence 5 55556699999999999999999998865 3577777776654
No 95
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.45 E-value=0.00046 Score=51.17 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=35.4
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+++++++|++.||+.|+...+.+.++..++.. ++.++.|..+..
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~ 56 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED 56 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC
Confidence 46777778899999999999999999888753 577777776644
No 96
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.41 E-value=0.00043 Score=51.33 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhh-CCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~Vs~~~~ 144 (259)
+.++++|++.||+.|+...+.+.++...++. ..+.+..|..+..
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 63 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN 63 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch
Confidence 4566666699999999999999999988866 4577777776654
No 97
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.41 E-value=0.00064 Score=50.80 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=33.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.+|+.|++.||+.|+...+.+.++..++. .++.+..|..+.
T Consensus 20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~ 61 (104)
T cd03004 20 EPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQK 61 (104)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCc
Confidence 466666679999999999999999998874 346777777654
No 98
>PTZ00051 thioredoxin; Provisional
Probab=97.38 E-value=0.00048 Score=50.82 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.++++|++.||+.|+...+.|.++..++ .++.++.|..+.
T Consensus 19 ~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~ 59 (98)
T PTZ00051 19 ELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDE 59 (98)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcc
Confidence 56666777999999999999999988765 357777777654
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.38 E-value=0.00061 Score=52.52 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
++||+.|.++||++|+..-|.|.++.+++.+. +.++-|..+.
T Consensus 15 klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe 56 (114)
T cd02986 15 KVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK 56 (114)
T ss_pred CEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc
Confidence 67777888999999999999999999988432 6677777554
No 100
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.36 E-value=0.00081 Score=51.70 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=32.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC-C-cEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSA-G-VKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~-g-v~vv~Vs~~ 142 (259)
+.+++.|++.||+.|+...+.++++..++++. + +.+..|..+
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 56777777999999999999999999888643 2 555556543
No 101
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.31 E-value=0.00092 Score=49.09 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.|+++|++.||+.|+...+.|.++..++ ...+.++.|..+.
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~ 56 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE 56 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc
Confidence 56666666999999999999999988876 4567777776543
No 102
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.29 E-value=0.00063 Score=50.42 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhh-CCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~Vs~~~ 143 (259)
+.+++.|++.||+.|+...+.+.++..+++. .++.++.|..+.
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 4566666799999999999999999988863 457777777666
No 103
>PHA02278 thioredoxin-like protein
Probab=97.23 E-value=0.001 Score=50.37 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.+|+.|+++||++|+...|.|.++.+++. ..+.++-|..+.
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 556666669999999999999999876642 235566666554
No 104
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00081 Score=51.29 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.|++.|-++||++|+.-.|.+.++..++.+ +.++-|..+.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde 62 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE 62 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc
Confidence 5666666699999999999999999998865 8888888776
No 105
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.16 E-value=0.012 Score=45.08 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=30.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
..|++.|++.||+.|+...+.|.++..++. ++.++-|..+.
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~ 63 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK 63 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc
Confidence 345555569999999999999999887763 46666666443
No 106
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.15 E-value=0.0023 Score=47.08 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
++||.| ...||+.|+...+.|.++..++.+ ++.++-|..+..
T Consensus 19 ~vvv~f-~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~ 60 (103)
T PF00085_consen 19 PVVVYF-YAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN 60 (103)
T ss_dssp EEEEEE-ESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS
T ss_pred CEEEEE-eCCCCCccccccceeccccccccc-ccccchhhhhcc
Confidence 555555 488999999999999999999877 888888887643
No 107
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.13 E-value=0.0018 Score=47.97 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+.+|+.|++.||+.|+...+.+.++..++.. .+.++.+..+..
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~ 61 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH 61 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch
Confidence 5455555599999999999999999888753 467777776543
No 108
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.13 E-value=0.00084 Score=49.44 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=33.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC-cEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG-VKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g-v~vv~Vs~~~ 143 (259)
+.+++.|+.+||+.|+...+.++++...++..+ +.++.|..+.
T Consensus 14 ~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 57 (102)
T TIGR01126 14 KDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA 57 (102)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc
Confidence 566666669999999999999999888886553 6666666554
No 109
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.13 E-value=0.0015 Score=52.45 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
++||+-|++.||++|+...|.|.++.+++.+. +.++-|..+...
T Consensus 24 ~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~ 67 (142)
T PLN00410 24 RLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP 67 (142)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH
Confidence 56666777999999999999999999887432 666778877644
No 110
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.12 E-value=0.00076 Score=49.02 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHh-hCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFD-SAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~Vs~~~ 143 (259)
+.+|++|+..||+.|+...+.+.++...++ ..++.++.|..+.
T Consensus 16 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 59 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59 (101)
T ss_pred CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc
Confidence 356666668999999999999999988885 5667888887665
No 111
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.05 E-value=0.00096 Score=48.88 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=34.3
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
+.++++|+..||+.|+...+.|+++..++. ..+.++.|..+...
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~ 58 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENP 58 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCH
Confidence 456666669999999999999999887774 35888888776543
No 112
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.98 E-value=0.0029 Score=46.27 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=39.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC--ChHHHHHHHh-hCCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--TPNKAQILAE-RLPFP 157 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~--~~~~~~~f~~-~~~fp 157 (259)
++++.| ++.||+.|...++.+.+...++.. .+.++.|... .......|.. ...+|
T Consensus 34 ~~~v~f-~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p 91 (127)
T COG0526 34 PVLVDF-WAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIP 91 (127)
T ss_pred eEEEEE-EcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCC
Confidence 555554 499999999999999999988765 6888888875 3333444432 34455
No 113
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.94 E-value=0.0017 Score=61.74 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=38.3
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
++.+|+.|+++||++|+...|.|.++..+++..++.++.|..+..
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 356777777999999999999999999999877888888887754
No 114
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.0028 Score=53.84 Aligned_cols=93 Identities=22% Similarity=0.319 Sum_probs=72.0
Q ss_pred EecCCCCeEecccccccCCCcEEEEEEc----CCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhh--C
Q 024977 81 IFTAAGEPVLFKDLWDQNEGVAVVALLR----HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER--L 154 (259)
Q Consensus 81 l~d~~G~~v~lsdl~~~~~~~vvL~f~r----~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~--~ 154 (259)
+...+| +.+|.||-+.+..-+|--|+- ...||.|..-+..+.-...-++..+|.+++||-...+.+..|++. .
T Consensus 57 Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW 135 (247)
T COG4312 57 FETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGW 135 (247)
T ss_pred eecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCC
Confidence 334556 699999987522223333332 347999999999998888889999999999999999999999994 4
Q ss_pred CCCCCCcccCCchHHHHHhCCcc
Q 024977 155 PFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 155 ~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
.|| .+++.+..+-+.|.+..
T Consensus 136 ~f~---w~Ss~~s~Fn~Df~vsf 155 (247)
T COG4312 136 QFP---WVSSTDSDFNRDFQVSF 155 (247)
T ss_pred cce---eEeccCccccccccccc
Confidence 566 89999988888887743
No 115
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.84 E-value=0.0033 Score=44.59 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=31.1
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 103 VVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 103 vL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
.|..|+..||++|....+.|.++..++.. .+.++-|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~ 41 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME 41 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc
Confidence 45566699999999999999999887743 37777777653
No 116
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.75 E-value=0.0038 Score=47.68 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+.+|+.|++.||+.|+...+.|.++..++. ++.++-|..+
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~ 64 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAE 64 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch
Confidence 456666669999999999999999988773 5666666644
No 117
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.74 E-value=0.028 Score=45.68 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=84.4
Q ss_pred cccCCCCCCcEEecC-----CCCeEecccccccC-CCcEEEEEEcCCCCHhhHHHHHHHHHHHH-H-HhhCCcEEEEE-e
Q 024977 70 ANVGDLLGDFSIFTA-----AGEPVLFKDLWDQN-EGVAVVALLRHFGCPCCWELASALKESKA-R-FDSAGVKLIAV-G 140 (259)
Q Consensus 70 ~~vG~~aPdf~l~d~-----~G~~v~lsdl~~~~-~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~-~-~~~~gv~vv~V-s 140 (259)
+..|+++|.+++.|- +|..++...+...+ .||+-|+++ -.+-+...+.-..|.+... . |.....+..+| +
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~-iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN 79 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQH-IAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIIN 79 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEE-eccCCchhHhhHHHHHHHHHcCCCccceeEEEEEe
Confidence 357899999888762 45556555433221 146777777 4466666665555544432 2 55556666664 5
Q ss_pred CCCh-----HHHHHHHh--hCCCCCCCcccCCchHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCC
Q 024977 141 VGTP-----NKAQILAE--RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDD 213 (259)
Q Consensus 141 ~~~~-----~~~~~f~~--~~~fp~~~ll~D~~~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~ 213 (259)
.++. .-++...+ +-.||...++.|.+|.+.++|++....
T Consensus 80 ~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~---------------------------------- 125 (160)
T PF09695_consen 80 LDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEES---------------------------------- 125 (160)
T ss_pred cccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCCC----------------------------------
Confidence 5432 12333333 234554448899999888888774310
Q ss_pred CCCccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 214 RSSVLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 214 ~~~~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
. +.+|+| +|+|+|.+..+= ...+++++++.+++
T Consensus 126 --S-----aiiVlDK~G~V~F~k~G~L--s~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 126 --S-----AIIVLDKQGKVQFVKEGAL--SPAEVQQVIALLKK 159 (160)
T ss_pred --c-----eEEEEcCCccEEEEECCCC--CHHHHHHHHHHHhc
Confidence 1 567778 899999887543 34466666666553
No 118
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.69 E-value=0.0058 Score=43.27 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=31.5
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+.++++|+..||+.|....+.++++..+ ..++.++.|..+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 4455566689999999999999998766 4677777777554
No 119
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.65 E-value=0.0048 Score=53.32 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=31.9
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+.+++.|+++||+.|+...|.+.++.++++. .+.+..|..+..
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~ 95 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA 95 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc
Confidence 3455556699999999999999999988853 355666655543
No 120
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0046 Score=49.78 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 98 NEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 98 ~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
++.||+|-|+ +.||.+|+.-.|.|+++..++ +.-+++.-|..++
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~ 103 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDE 103 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhh-cCeEEEEEEcccc
Confidence 3346666555 999999999999999999887 3345565565443
No 121
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.61 E-value=0.0047 Score=48.14 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=31.6
Q ss_pred CcEEEEEEcCCCCHh--hH--HHHHHHHHHHHH-HhhCCcEEEEEeCCC
Q 024977 100 GVAVVALLRHFGCPC--CW--ELASALKESKAR-FDSAGVKLIAVGVGT 143 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~--C~--~~l~~L~~~~~~-~~~~gv~vv~Vs~~~ 143 (259)
+.+||+||+++||++ |+ ...|.|.+...+ +++.++.++-|..+.
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~ 75 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK 75 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC
Confidence 368999999999987 99 455556665554 456678777777543
No 122
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.55 E-value=0.0063 Score=39.21 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=34.8
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHH
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~ 149 (259)
++|+..||+.|....+.+.+. +....++.++.++.+.......
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEK 44 (69)
T ss_pred EEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhh
Confidence 456689999999999999988 5566789999999887665444
No 123
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.54 E-value=0.01 Score=58.16 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHH---HHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+.|++.|+++||+.|+..-+.. .+..++++ ++.++-|..+
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt 517 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVT 517 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECC
Confidence 5666666799999999865543 34445453 5666666654
No 124
>PLN02309 5'-adenylylsulfate reductase
Probab=96.51 E-value=0.0051 Score=58.51 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=37.1
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
++.+|++|.++||++|+...+.+.++..++...++.++.|..+
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 3566666679999999999999999999998778999889887
No 125
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.42 E-value=0.01 Score=50.89 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=50.8
Q ss_pred cccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCchHHH
Q 024977 91 FKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVY 170 (259)
Q Consensus 91 lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~~~~~ 170 (259)
+.++.++ .-+++||++ .|++|..+.|-|+.+.+++ |+.|+.||.|.... -.||. -. .+...+
T Consensus 115 l~~la~~---~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~-------~~fp~--~~--~~~g~~ 176 (215)
T PF13728_consen 115 LKQLAQK---YGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPI-------PSFPN--PR--PDPGQA 176 (215)
T ss_pred HHHHhhC---eEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCC-------cCCCC--CC--CCHHHH
Confidence 4444443 667777755 8999999999999998764 99999999986431 14552 11 266678
Q ss_pred HHhCCccccc
Q 024977 171 NLLGLYHGVG 180 (259)
Q Consensus 171 ~~~Gv~~~~~ 180 (259)
+.||+...+.
T Consensus 177 ~~l~v~~~Pa 186 (215)
T PF13728_consen 177 KRLGVKVTPA 186 (215)
T ss_pred HHcCCCcCCE
Confidence 8899975443
No 126
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.35 E-value=0.0091 Score=56.09 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=36.5
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC--cEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~Vs~~~~ 144 (259)
+.++++|++.||+.|+...+.+.++...+++.+ +.++.|..+..
T Consensus 19 ~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 64 (462)
T TIGR01130 19 EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE 64 (462)
T ss_pred CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc
Confidence 566777779999999999999999998888776 77777877654
No 127
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.009 Score=53.24 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
..||+.||++||+.|..-+|.|.++..+++ -.+.++-|++|...
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~-G~f~LakvN~D~~p 87 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-GKFKLAKVNCDAEP 87 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhC-CceEEEEecCCcch
Confidence 356666779999999999999999998763 33556667777643
No 128
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.04 E-value=0.016 Score=48.18 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 102 vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
.||+.|++.||+.|+...+.|.++..++. ++.++-|..+.
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~ 124 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA 124 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc
Confidence 66666679999999999999999988773 57777777654
No 129
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.01 E-value=0.019 Score=44.08 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=28.2
Q ss_pred CcEEEEEEcCCC--CHhhHHHHHHHHHHHHHHhhCCcEEEEEe
Q 024977 100 GVAVVALLRHFG--CPCCWELASALKESKARFDSAGVKLIAVG 140 (259)
Q Consensus 100 ~~vvL~f~r~~~--Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs 140 (259)
+++||.|+ +.| ||.|+...|.|.++.+++.+. +.++-|.
T Consensus 28 ~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVd 68 (111)
T cd02965 28 GDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVG 68 (111)
T ss_pred CCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEE
Confidence 46666665 665 999999999999999887532 4444444
No 130
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=95.99 E-value=0.038 Score=39.53 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHH---HHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccC
Q 024977 101 VAVVALLRHFGCPCCWELASALK---ESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYAD 164 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~---~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D 164 (259)
+.|++.|.+.||+.|+..-..+- +..+.+ ..++.++-|..++......+.. .++|.- ++.|
T Consensus 18 kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~-~~~fv~v~vd~~~~~~~~~~~~-~~~P~~-~~ld 81 (82)
T PF13899_consen 18 KPVLVDFGADWCPPCKKLEREVFSDPEVQEAL-NKNFVLVKVDVDDEDPNAQFDR-QGYPTF-FFLD 81 (82)
T ss_dssp SEEEEEEETTTTHHHHHHHHHTTTSHHHHHHH-HHCSEEEEEETTTHHHHHHHHH-CSSSEE-EEEE
T ss_pred CCEEEEEECCCCHhHHHHHHHHcCCHHHHHHH-HCCEEEEEEEcCCCChhHHhCC-ccCCEE-EEeC
Confidence 45555556999999999877662 222223 3677788888776654333332 345522 4444
No 131
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.96 E-value=0.021 Score=49.98 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=49.0
Q ss_pred cccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCchHHH
Q 024977 91 FKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVY 170 (259)
Q Consensus 91 lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~~~~~ 170 (259)
+.++.++ .-+++||+ ..||+|..+.|-|+.+.++ .|+.|++||.|... .-.||. -. ++...+
T Consensus 138 i~~la~~---~GL~fFy~-s~Cp~C~~~aPil~~fa~~---yg~~v~~VS~DG~~-------~p~fp~--~~--~d~gqa 199 (248)
T PRK13703 138 IAKLAEH---YGLMFFYR-GQDPIDGQLAQVINDFRDT---YGLSVIPVSVDGVI-------NPLLPD--SR--TDQGQA 199 (248)
T ss_pred HHHHHhc---ceEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCCC-------CCCCCC--Cc--cChhHH
Confidence 4445443 67888886 6799999999999998865 48999999998642 113552 11 233344
Q ss_pred HHhCCccccc
Q 024977 171 NLLGLYHGVG 180 (259)
Q Consensus 171 ~~~Gv~~~~~ 180 (259)
+.+|+..-+.
T Consensus 200 ~~l~v~~~PA 209 (248)
T PRK13703 200 QRLGVKYFPA 209 (248)
T ss_pred HhcCCcccce
Confidence 6788765433
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=95.93 E-value=0.011 Score=56.19 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC-cEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG-VKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g-v~vv~Vs~~~ 143 (259)
+.||++|+++||+.|+...|.+.++..++++.+ +.+..|..+.
T Consensus 376 k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~ 419 (477)
T PTZ00102 376 KDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA 419 (477)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC
Confidence 566666679999999999999999988876643 4555566554
No 133
>PTZ00102 disulphide isomerase; Provisional
Probab=95.90 E-value=0.022 Score=54.07 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC--cEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~Vs~~~~ 144 (259)
+.+|++|++.||+.|+...|.+.+...++++.+ +.+.-|..+..
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~ 95 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE 95 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC
Confidence 567777779999999999999999888887654 55666665543
No 134
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.88 E-value=0.025 Score=38.59 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=27.3
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+..|...|||+|....+.|+++..+ ..++.+.-|..++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~ 40 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAE 40 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEccc
Confidence 3445589999999988888887553 2457777776554
No 135
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.81 E-value=0.023 Score=41.95 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+++++| ...||+.|....+.|.++..+++. .+.++-|..+.
T Consensus 14 ~~~~~f-~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~ 54 (103)
T cd02982 14 PLLVLF-YNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADD 54 (103)
T ss_pred CEEEEE-EcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHh
Confidence 555555 589999999999999999999973 36777776655
No 136
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.78 E-value=0.015 Score=45.94 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHH--HHHHhhCCcEEEEEeCCChH-HHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 101 VAVVALLRHFGCPCCWELASALKES--KARFDSAGVKLIAVGVGTPN-KAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~--~~~~~~~gv~vv~Vs~~~~~-~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.|+++|-..||++|+..-..+-+- ..++-+.+..+|-+-.+..+ ... ....++|-- ++.|+++.+...+--+.
T Consensus 24 Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~--~~g~~vPti-vFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 24 KPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS--PDGQYVPRI-MFVDPSLTVRADITGRY 100 (130)
T ss_pred CeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC--ccCcccCeE-EEECCCCCCcccccccc
Confidence 4555556799999999976664221 12222233433333333211 010 123345533 88999987665543333
Q ss_pred cccccccCCchhHHHHHHHHHHHHHh
Q 024977 178 GVGRTFFNPASAKVFSRFEALRKAVQ 203 (259)
Q Consensus 178 ~~~~~~~~p~~~~v~~~~~~l~~~~~ 203 (259)
+....+..|... -.-..+|.++.+
T Consensus 101 ~~~~~~y~~~~~--~~~~~~m~~a~~ 124 (130)
T cd02960 101 SNRLYTYEPADI--PLLIENMKKALK 124 (130)
T ss_pred cCccceeCcCcH--HHHHHHHHHHHH
Confidence 322233344431 112345555544
No 137
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.77 E-value=0.029 Score=49.37 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=52.6
Q ss_pred cccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCchHHH
Q 024977 91 FKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVY 170 (259)
Q Consensus 91 lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~~~~~ 170 (259)
+.++.++ .-+++||+ ..||+|....|-|+.+.++ -|+.|++||.|... --+||. .. ++...+
T Consensus 145 i~~la~~---~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~~-------~p~fp~--~~--~d~gqa 206 (256)
T TIGR02739 145 IQQLSQS---YGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGTL-------IPGLPN--SR--SDSGQA 206 (256)
T ss_pred HHHHHhc---eeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCCC-------CCCCCC--cc--CChHHH
Confidence 4444443 67888886 6799999999999998865 48999999998742 123552 12 245557
Q ss_pred HHhCCcccccccccCCc
Q 024977 171 NLLGLYHGVGRTFFNPA 187 (259)
Q Consensus 171 ~~~Gv~~~~~~~~~~p~ 187 (259)
+.+|+...+...+++|.
T Consensus 207 ~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 207 QHLGVKYFPALYLVNPK 223 (256)
T ss_pred HhcCCccCceEEEEECC
Confidence 77887664443334443
No 138
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.66 E-value=0.066 Score=41.92 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=39.9
Q ss_pred cEEEEEEcCCCCHhhHHHHHH-HH--HHHHHHhhCCcEEEEEeCCC-hHHHHHHHh-------hCCCCCCCcccCCchHH
Q 024977 101 VAVVALLRHFGCPCCWELASA-LK--ESKARFDSAGVKLIAVGVGT-PNKAQILAE-------RLPFPMDCLYADPDRKV 169 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~-L~--~~~~~~~~~gv~vv~Vs~~~-~~~~~~f~~-------~~~fp~~~ll~D~~~~~ 169 (259)
+.|+++|.+.||+.|+..-.. +. +..+.+ +.+..+|-|..+. ++..+.+.+ ..++|.- ++.|++|+.
T Consensus 16 KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~-vfl~~~G~~ 93 (124)
T cd02955 16 KPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN-VFLTPDLKP 93 (124)
T ss_pred CeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE-EEECCCCCE
Confidence 556666779999999986543 22 333333 3355556565543 232333322 2366654 888999765
Q ss_pred HH
Q 024977 170 YN 171 (259)
Q Consensus 170 ~~ 171 (259)
-.
T Consensus 94 ~~ 95 (124)
T cd02955 94 FF 95 (124)
T ss_pred Ee
Confidence 43
No 139
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.62 E-value=0.031 Score=39.64 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=26.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
+.|| +.|||.|....+.+.++.+++ |+.+-.+..++..
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~ 40 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMN 40 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHH
Confidence 4454 799999999999999998765 3333444444433
No 140
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=95.52 E-value=0.039 Score=45.51 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=65.9
Q ss_pred CCCCcccCCCCCCcEEec-CCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHH-------HHhhC-----
Q 024977 66 TEFPANVGDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKA-------RFDSA----- 132 (259)
Q Consensus 66 ~~~~~~vG~~aPdf~l~d-~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~-------~~~~~----- 132 (259)
....+.+|..+|+..+.- .+|+++.|.+...-.++.-|++|-...-.+.+...+..|.+..+ .|...
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~ 105 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPD 105 (169)
T ss_dssp GBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TT
T ss_pred cccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Confidence 456788999999999876 89999999987755445778888777677666666666666553 23222
Q ss_pred -CcEEEEEeCCChHHH--HHH-------HhhCCCCCCCcccCC------chHHHHHhCCcc
Q 024977 133 -GVKLIAVGVGTPNKA--QIL-------AERLPFPMDCLYADP------DRKVYNLLGLYH 177 (259)
Q Consensus 133 -gv~vv~Vs~~~~~~~--~~f-------~~~~~fp~~~ll~D~------~~~~~~~~Gv~~ 177 (259)
-++++.|.......+ ..+ .+..++.+..||+|. .+++|+.|||..
T Consensus 106 s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 106 SVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp SSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 278888887653322 222 113344444588886 489999999864
No 141
>PTZ00062 glutaredoxin; Provisional
Probab=95.41 E-value=0.029 Score=47.78 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
..+|++|++.|||.|+...+-|.++..++. .+.++-|..+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 456777789999999999999999988773 4777766644
No 142
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.39 E-value=0.041 Score=46.95 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=30.1
Q ss_pred cEEEEEEc--CCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLR--HFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r--~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
..+++|+- +.||++|+...|.|.++..++. ++++..+..+
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 55666664 3999999999999999988773 4566666665
No 143
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.38 E-value=0.034 Score=52.20 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~Vs~~~~ 144 (259)
+.+|++|++.||+.|....|.+.++...++.. ++.++.|..+..
T Consensus 365 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 365 KDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred CeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 56777777999999999999999999998763 677777876543
No 144
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.67 E-value=0.095 Score=44.70 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=30.1
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
+++++..|++.||++|....+.++++..+ ...+.+.-|..+.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~ 174 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANE 174 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCC
Confidence 47888878899999999877777776654 2346665566554
No 145
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=94.66 E-value=0.14 Score=44.17 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=60.8
Q ss_pred CCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC---cEEEEEeCCChHHHHH--
Q 024977 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG---VKLIAVGVGTPNKAQI-- 149 (259)
Q Consensus 75 ~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g---v~vv~Vs~~~~~~~~~-- 149 (259)
..|.+++-+ ...+.+..| .|+|+.+--.+|.+|..++..|..+..+|++.| |.+++|+.........
T Consensus 9 ~~p~W~i~~----~~pm~~~~G----~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~ 80 (238)
T PF04592_consen 9 PPPPWKIGG----QDPMLNSLG----HVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYW 80 (238)
T ss_pred CCCCceECC----chHhhhcCC----cEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHH
Confidence 355555533 334556666 355555556799999999999999999998876 4677888765443332
Q ss_pred -HHhhC--CCCCCCccc-C-CchHHHHHhCCc
Q 024977 150 -LAERL--PFPMDCLYA-D-PDRKVYNLLGLY 176 (259)
Q Consensus 150 -f~~~~--~fp~~~ll~-D-~~~~~~~~~Gv~ 176 (259)
++++. +|| ||- | .+..+...|+-.
T Consensus 81 ~l~~r~~~~ip---Vyqq~~~q~dvW~~L~G~ 109 (238)
T PF04592_consen 81 ELKRRVSEHIP---VYQQDENQPDVWELLNGS 109 (238)
T ss_pred HHHHhCCCCCc---eecCCccccCHHHHhCCC
Confidence 23344 488 775 3 557788887754
No 146
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.64 E-value=0.068 Score=45.04 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
..||+.|++.||+.|+...+.|.++..++. .+.++-|..+
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 355555669999999999999999998873 5777777643
No 147
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.49 E-value=0.11 Score=38.19 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=30.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
|+-+.+|.+.||++|..-.+.+.++..++. ++++..+..+
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~ 52 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA 52 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence 888888889999999998888888776542 4666666543
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.42 E-value=0.19 Score=34.02 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh-HHHHHHHhh---CCCC
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILAER---LPFP 157 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~-~~~~~f~~~---~~fp 157 (259)
+.+|...|||+|+...+.|. +.|+.+..+..+.. +..+++.+. ..+|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEKDSAAREEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccCCHHHHHHHHHHhCCCccc
Confidence 45677999999998766554 35788887777653 334455552 4567
No 149
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.37 E-value=0.12 Score=40.15 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=31.7
Q ss_pred CcEEEEEEc------CCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 100 GVAVVALLR------HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 100 ~~vvL~f~r------~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
+++.|+|+- .+|||.|+.--|.+++..... ..+..+|-|..++..
T Consensus 20 ~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~-~~~~~lv~v~VG~r~ 70 (119)
T PF06110_consen 20 KPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA-PENARLVYVEVGDRP 70 (119)
T ss_dssp SEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---HH
T ss_pred CeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC-CCCceEEEEEcCCHH
Confidence 477777773 359999999999999988763 347888888887754
No 150
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.01 E-value=0.18 Score=34.87 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=23.0
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
..|+..|||+|+...+.|.+ .|+..-.|..+...
T Consensus 3 ~ly~~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~~ 36 (77)
T TIGR02200 3 TVYGTTWCGYCAQLMRTLDK-------LGAAYEWVDIEEDE 36 (77)
T ss_pred EEEECCCChhHHHHHHHHHH-------cCCceEEEeCcCCH
Confidence 45669999999997766543 46665566665433
No 151
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.66 E-value=0.12 Score=40.80 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=24.9
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+.-+..+-.+|||.|...+|.|.++.+... ++++=.|..+
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd 81 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRD 81 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HH
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEec
Confidence 444444559999999999999999988643 5555555443
No 152
>PHA02125 thioredoxin-like protein
Probab=93.30 E-value=0.27 Score=34.49 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=16.8
Q ss_pred EEEEcCCCCHhhHHHHHHHHH
Q 024977 104 VALLRHFGCPCCWELASALKE 124 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~ 124 (259)
++.|.+.||+.|+...+.|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 455669999999998888754
No 153
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=92.81 E-value=0.37 Score=33.90 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=32.4
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hHHHHHHH-h---hCCCCCCCcccC
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILA-E---RLPFPMDCLYAD 164 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~-~~~~~~f~-~---~~~fp~~~ll~D 164 (259)
.|...|||+|....+.|.+.. +. ....++-|..+. ....+++. + ...+|. ++.|
T Consensus 3 ~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~--v~i~ 61 (84)
T TIGR02180 3 VFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPN--IFIN 61 (84)
T ss_pred EEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCe--EEEC
Confidence 445899999999998888754 11 125677776653 23333333 3 246674 4544
No 154
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.67 E-value=0.51 Score=31.36 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=34.0
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH-HHHHHHh---hCCCCCCCcccC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAE---RLPFPMDCLYAD 164 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~-~~~~f~~---~~~fp~~~ll~D 164 (259)
..|...|||.|......| ++.|+..-.+..+... ..+++.+ ..++|. ++.|
T Consensus 2 ~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~--v~i~ 56 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQ--VFID 56 (60)
T ss_dssp EEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSE--EEET
T ss_pred EEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHcCCCccCE--EEEC
Confidence 456689999999877665 4578888888777653 3344444 367774 4444
No 155
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=92.65 E-value=0.3 Score=35.03 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=28.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
|..|...|||+|..-...|+++..++ .|+.+.-|..+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 34456899999999999998887654 577777766653
No 156
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.41 E-value=0.53 Score=33.32 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=30.9
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPM 158 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~ 158 (259)
..|...|||+|..--..|. +.|+....|..+.......+.+ ...+|.
T Consensus 11 ~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~ 60 (79)
T TIGR02190 11 VVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVTGATTVPQ 60 (79)
T ss_pred EEEECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHHCCCCcCe
Confidence 3455899999998776664 4677777777665444444544 356773
No 157
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.19 Score=43.82 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=33.1
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
++.|++-|-+.||.+|....|.++.+..++ .|..++-|..+
T Consensus 21 ~k~v~Vdfta~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd 61 (288)
T KOG0908|consen 21 GKLVVVDFTASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVD 61 (288)
T ss_pred ceEEEEEEEecccchHHhhhhHHHHhhhhC--cccEEEEEeHH
Confidence 468888888999999999999999998877 56666656544
No 158
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.68 E-value=0.72 Score=34.91 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=40.3
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHH---HHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCC-chHH
Q 024977 100 GVAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADP-DRKV 169 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~-~~~~ 169 (259)
++.+++++.+.||+.|....... .+..+.++ ....++.+..++++ ..++.+ -.++|.- ++.|+ ++.+
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~-~~i~~~~g~~ 90 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-GQRFLQSYKVDKYPHI-AIIDPRTGEV 90 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-HHHHHHHhCccCCCeE-EEEeCccCcE
Confidence 47788888899999999866543 22333343 34555666665544 345555 2355543 77788 5543
No 159
>smart00594 UAS UAS domain.
Probab=91.52 E-value=0.79 Score=35.38 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=41.2
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHH---HHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCCch
Q 024977 100 GVAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDR 167 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~~~ 167 (259)
+|.+++++.+.||+.|......+ .+..+-+ +.++-++.+...+.+. .++.+ -.+||.- ++.|+++
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~-~~l~~~~ 97 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYV-AIVDPRT 97 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEE-EEEecCC
Confidence 46788888899999999987764 2233334 3466666676666654 34444 2356643 6667765
No 160
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=91.44 E-value=0.89 Score=30.59 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=31.3
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hHHHHHHHh---hCCCCCCCcccCC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAE---RLPFPMDCLYADP 165 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~-~~~~~~f~~---~~~fp~~~ll~D~ 165 (259)
.+|...|||.|......|.+ .|+.+..+..+. ......|.+ ...+| .+.+.
T Consensus 3 ~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP---~i~~~ 57 (73)
T cd02976 3 TVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRSVP---VVVIG 57 (73)
T ss_pred EEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcccC---EEEEC
Confidence 44558899999986555443 567777776664 333444544 35778 45543
No 161
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.15 E-value=1.1 Score=29.86 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=28.5
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHH-HHHHh---hCCCC
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA-QILAE---RLPFP 157 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~-~~f~~---~~~fp 157 (259)
.|-..|||+|+.-...|.+ .|+.+.-+..+..... ..+.+ ...+|
T Consensus 4 ly~~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~~P 52 (72)
T cd02066 4 VFSKSTCPYCKRAKRLLES-------LGIEFEEIDILEDGELREELKELSGWPTVP 52 (72)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCcEEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 4458899999988777665 4566666666654433 33343 24667
No 162
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.88 E-value=0.45 Score=37.25 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=27.4
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEE
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIA 138 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~ 138 (259)
.++.|+.|.-.+||+|+..-+.+.++..+..+ ++++.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~ 41 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVF 41 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEE
Confidence 36777777799999999999999887765432 44443
No 163
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.86 E-value=1 Score=31.02 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=30.9
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCC
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADP 165 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~ 165 (259)
.|-..|||+|..-...|. +.|+....+..+.....+.+.+ ...+|. |+.|.
T Consensus 5 lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~--ifi~g 58 (72)
T cd03029 5 LFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSLRAVTGAMTVPQ--VFIDG 58 (72)
T ss_pred EEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHHHHHhCCCCcCe--EEECC
Confidence 344799999998866655 3577766666654433334433 346773 45553
No 164
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=0.29 Score=46.93 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=39.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCC--cEEEEEeCCChHHHHHHHhh---CCCCCCCcccC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTPNKAQILAER---LPFPMDCLYAD 164 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~Vs~~~~~~~~~f~~~---~~fp~~~ll~D 164 (259)
..+|+-|-++||..|...+|++.+....+.+.| +.+.=|-... . ..++.+ -+||.-.|+-+
T Consensus 43 ~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~--~-~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 43 EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE--E-SDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch--h-hhhHhhhcCCCCCeEEEEec
Confidence 455444449999999999999999999998884 4444443322 2 444443 35664223333
No 165
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=0.69 Score=35.90 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=28.7
Q ss_pred CCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 110 ~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
+|||.|..-.|-+.+....+ ..++.+|-|..++..
T Consensus 43 SWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHA-PEDVHFVHVYVGNRP 77 (128)
T ss_pred cCCchHHHhhHHHHHHHHhC-CCceEEEEEEecCCC
Confidence 59999999999999887743 467889988888754
No 166
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.75 E-value=1.5 Score=32.49 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=31.1
Q ss_pred cEEEEEEcC----CCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHH-Hh---hCCCCCCCcccC
Q 024977 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL-AE---RLPFPMDCLYAD 164 (259)
Q Consensus 101 ~vvL~f~r~----~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f-~~---~~~fp~~~ll~D 164 (259)
++||+ -.+ +|||+|..--.-|.+ .|+....+........++. .+ ...+|. ++.|
T Consensus 13 ~Vvvf-~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~--vfi~ 74 (97)
T TIGR00365 13 PVVLY-MKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQ--LYVK 74 (97)
T ss_pred CEEEE-EccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHhCCCCCCE--EEEC
Confidence 55554 443 799999987665544 5676666666443333333 22 346773 5555
No 167
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.70 E-value=0.63 Score=43.21 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=30.4
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+..++.|| ++||..|....+.+.++...++. -+.+..|..+..
T Consensus 48 ~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~ 90 (383)
T KOG0191|consen 48 SPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEH 90 (383)
T ss_pred CceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhh
Confidence 35566665 99999999999999988887755 233444544443
No 168
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=0.46 Score=45.60 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.7
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA 132 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~ 132 (259)
++-||+-|-+.||+.|.+..|.++++.+.+++.
T Consensus 384 ~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 384 GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 355566566999999999999999999999875
No 169
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.11 E-value=7.6 Score=29.90 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=41.3
Q ss_pred cccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 91 FKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 91 lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
|+++..+ +.+||+|-+..--+.-..++..|++....+.++.+.++.|..+.
T Consensus 3 L~~~~w~--~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~ 53 (118)
T PF13778_consen 3 LDQFRWK--NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDG 53 (118)
T ss_pred hhHhcCc--CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCc
Confidence 4566665 37899998888899999999999998888999999888875443
No 170
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.92 E-value=1.4 Score=31.58 Aligned_cols=51 Identities=22% Similarity=0.491 Sum_probs=31.2
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--CChHHHHHHHh----hCCCCCCCcccCC
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--GTPNKAQILAE----RLPFPMDCLYADP 165 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~~~~~~~~f~~----~~~fp~~~ll~D~ 165 (259)
.|-..+||+|..--..|. ++|+...-|.. +..+..+.+.+ ...+|. |+.|.
T Consensus 5 iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~--I~i~~ 61 (80)
T COG0695 5 IYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ--IFIGG 61 (80)
T ss_pred EEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCE--EEECC
Confidence 345678999998765555 56776555444 44335556655 257784 55554
No 171
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=88.86 E-value=2 Score=31.28 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=30.8
Q ss_pred cEEEEEEc---CCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHH-HHHh---hCCCCCCCcccC
Q 024977 101 VAVVALLR---HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ-ILAE---RLPFPMDCLYAD 164 (259)
Q Consensus 101 ~vvL~f~r---~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~-~f~~---~~~fp~~~ll~D 164 (259)
++||+--. .+|||+|..-...|.+ .|+..-.+..+.....+ ...+ ...+|. |+.|
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~--vfi~ 70 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILEDEEVRQGLKEYSNWPTFPQ--LYVN 70 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCCCHHHHHHHHHHhCCCCCCE--EEEC
Confidence 56665432 2699999987665554 45665555554333333 3333 356774 5555
No 172
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.86 E-value=1 Score=35.45 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=45.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.+|...+|+.|+....-| ++.|+.+..+.. + +.+.+..|.+.++.+.+ -+....+..|+.++...
T Consensus 2 i~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~-~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTD-EIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHH-HHHhcCcHHHHhCCCCc
Confidence 4577799999999866544 446776665543 2 23567777776533322 57788999999998864
No 173
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=88.65 E-value=2.4 Score=29.10 Aligned_cols=52 Identities=17% Similarity=0.394 Sum_probs=32.4
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hHHHHHHHh---hC-CCCCCCcccCC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAE---RL-PFPMDCLYADP 165 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~-~~~~~~f~~---~~-~fp~~~ll~D~ 165 (259)
..|...+||+|..-...|++ .|+..-.+..+. ++..+++.+ .. .+|. ++.|.
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~--v~i~g 59 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQ--IFIGD 59 (75)
T ss_pred EEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCE--EEECC
Confidence 45668999999987766654 567766666654 344445544 22 6774 55553
No 174
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=88.28 E-value=1.7 Score=30.31 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=30.6
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh-HHHHHHH-h---hCCCCCCCcccC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILA-E---RLPFPMDCLYAD 164 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~-~~~~~f~-~---~~~fp~~~ll~D 164 (259)
++|-..|||.|..-...|.+... ....+=|..+.. ...+... + ...+|. ++.|
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~--v~~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRTVPN--VFIG 60 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCe--EEEC
Confidence 44458999999998877776432 345555655443 3333332 2 346773 4444
No 175
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.11 E-value=2.4 Score=29.21 Aligned_cols=50 Identities=20% Similarity=0.515 Sum_probs=31.3
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hHHHHHHHh---hCCCCCCCcccC
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAE---RLPFPMDCLYAD 164 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~-~~~~~~f~~---~~~fp~~~ll~D 164 (259)
.|-..|||+|+.-...|.+ .|+....+..+. ++...++.+ ...+|. ++.|
T Consensus 5 ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~--v~i~ 58 (73)
T cd03027 5 IYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSSVVPQ--IFFN 58 (73)
T ss_pred EEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCCCcCE--EEEC
Confidence 3447899999987766554 677777776654 333344444 456673 4555
No 176
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=88.05 E-value=2 Score=29.66 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=30.3
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHH-HHHHh--hCCCCC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA-QILAE--RLPFPM 158 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~-~~f~~--~~~fp~ 158 (259)
.+|...+||+|+.-...|. +.|+.+-.+..+..... ..+.+ ...+|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~ 51 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQGFRQVPV 51 (72)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcCCcccCE
Confidence 4567899999998877765 36777777766644333 33333 246673
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.70 E-value=2.3 Score=33.61 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=31.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHH-hhCCcEEEEEeC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARF-DSAGVKLIAVGV 141 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~-~~~gv~vv~Vs~ 141 (259)
+++|..|--..||+|....+.+.++..++ +...+.++.+..
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 66666777999999999999999888886 344677776654
No 178
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=87.53 E-value=1.9 Score=32.93 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=45.9
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhC--CCCCCCcccCCchHHHHHhCCcc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERL--PFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~--~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.+|...+|+.|+.-..-|.+ .|+.+..+.. + +.+.+++|.+.+ ++. -+....+..|+.++...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~---~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLTENGVE---DIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHhcCCHH---HHHhcCcHHHHHcCCCc
Confidence 457779999999987655544 5766666554 2 345678888865 544 57788999999998764
No 179
>PHA03050 glutaredoxin; Provisional
Probab=87.10 E-value=2.5 Score=32.13 Aligned_cols=18 Identities=28% Similarity=0.720 Sum_probs=13.3
Q ss_pred EcCCCCHhhHHHHHHHHH
Q 024977 107 LRHFGCPCCWELASALKE 124 (259)
Q Consensus 107 ~r~~~Cp~C~~~l~~L~~ 124 (259)
|..+|||+|..-..-|.+
T Consensus 18 ys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 18 FVKFTCPFCRNALDILNK 35 (108)
T ss_pred EECCCChHHHHHHHHHHH
Confidence 348999999876665554
No 180
>PRK10638 glutaredoxin 3; Provisional
Probab=87.08 E-value=2.6 Score=29.93 Aligned_cols=51 Identities=20% Similarity=0.470 Sum_probs=31.1
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH-HHHHHHh---hCCCCCCCcccC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAE---RLPFPMDCLYAD 164 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~-~~~~f~~---~~~fp~~~ll~D 164 (259)
.+|-..|||+|..-...|.+ .|+....+..+... ...++.+ ...+|. |+.|
T Consensus 5 ~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~--i~~~ 59 (83)
T PRK10638 5 EIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQ--IFID 59 (83)
T ss_pred EEEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHhCCCCcCE--EEEC
Confidence 35558999999987766654 56666666665433 3445554 345673 4444
No 181
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.90 E-value=1.3 Score=41.19 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=38.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhh-CCcEEEEEeCCChHHHHHHHhhCCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGTPNKAQILAERLPFP 157 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~Vs~~~~~~~~~f~~~~~fp 157 (259)
..++.|| ..||+.|+..++.+.++...++. .++.+..+..+..........-..||
T Consensus 164 ~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 164 DWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred ceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCc
Confidence 4555555 99999999999999999998874 67777777766333333333323444
No 182
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=86.88 E-value=1.8 Score=32.85 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=43.5
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCc
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
.+|...+|++|+.-..-|.+ .|+.+..+.. + +.+.++.+.+..+.|.. -+....+..|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~-~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLK-KFFNTSGKSYRELGLK 69 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHH-HHHhcCCchHHhCCcc
Confidence 45678999999987766554 5666555543 2 34557777776665533 3445778889998875
No 183
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=86.88 E-value=0.88 Score=44.30 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCCHhhHH-HHHHHHHHHHHHhhCCcEEEE--EeCCChHHHHHHHh--hCCCCCCCcccCCchHH
Q 024977 101 VAVVALLRHFGCPCCWE-LASALKESKARFDSAGVKLIA--VGVGTPNKAQILAE--RLPFPMDCLYADPDRKV 169 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~-~l~~L~~~~~~~~~~gv~vv~--Vs~~~~~~~~~f~~--~~~fp~~~ll~D~~~~~ 169 (259)
|++|-|| +.||-.|++ |-.-+++-..+++-.|+.++= +..++++..+..++ ..+.|. +++.|++|+-
T Consensus 476 pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~-~~ff~~~g~e 547 (569)
T COG4232 476 PVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPT-YLFFGPQGSE 547 (569)
T ss_pred cEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCE-EEEECCCCCc
Confidence 5555555 999999999 444555666667777877665 45566665444444 345553 2778877653
No 184
>PRK10329 glutaredoxin-like protein; Provisional
Probab=86.66 E-value=3.2 Score=29.68 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=30.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHH-HHHHHh--hCCCC
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK-AQILAE--RLPFP 157 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~-~~~f~~--~~~fp 157 (259)
+..|-..|||+|..-...| ++.|+.+-.|..+.... ...+.. ...+|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vP 52 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLP 52 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcC
Confidence 3455689999999865555 45788887777765433 333333 24667
No 185
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=85.75 E-value=2.7 Score=34.44 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCCCCCcEEec-CCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHh-------------hCCcEEEE
Q 024977 73 GDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFD-------------SAGVKLIA 138 (259)
Q Consensus 73 G~~aPdf~l~d-~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~-------------~~gv~vv~ 138 (259)
|..+|++.+.. .+++++.|.+.....++.-|++|-...-++.....+..|.+....-. ..-++++.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVVT 80 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEEE
Confidence 56788888777 78999999887654444666666544455555555555555442211 11256777
Q ss_pred EeCCChHHHH--HHHh-------hCCCCCCCcccCCc------hHHHHHhCCc
Q 024977 139 VGVGTPNKAQ--ILAE-------RLPFPMDCLYADPD------RKVYNLLGLY 176 (259)
Q Consensus 139 Vs~~~~~~~~--~f~~-------~~~fp~~~ll~D~~------~~~~~~~Gv~ 176 (259)
|........+ .+-+ .....+..++.|.+ +.+++.||+.
T Consensus 81 I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~ 133 (167)
T cd02979 81 IHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGID 133 (167)
T ss_pred EecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCC
Confidence 7666443222 1111 11222233677754 6678888774
No 186
>PRK12559 transcriptional regulator Spx; Provisional
Probab=85.74 E-value=3.3 Score=32.58 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=45.8
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.+|-..+|+.|+....-| ++.|+.+-.+.. + +.+.++.|.+.++++.+ -+....+..|+.+++..
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~-~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWL-------EENQIDYTEKNIVSNSMTVDELKSILRLTEEGAT-EIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHH-HHHhcCcHHHHhCCCCc
Confidence 4567799999999866544 446666555443 3 45678888887555422 46778899999998864
No 187
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.71 E-value=2.2 Score=31.88 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=42.3
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC----ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCc
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~----~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
.+|...+|+.|+.-..-|++ .|+.+..|... +.+.++++....+.+.+ -+....+..|+.++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~-~li~~~~~~~~~l~~~ 69 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVE-DLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHH-HHHhcCCchHHHcCCc
Confidence 46778999999987655544 56655555442 34566777766554322 4566788889998886
No 188
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=85.53 E-value=2.4 Score=32.01 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=44.5
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCc
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
.+|..++|+.|+....-|.+ .|+.+-.+.. + +.+.++.|.+..++. -+....+..|+.+++.
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g~~---~li~~~~~~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVGWE---TLLNKRGTTWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhChH---HHHccCchHHHhCChh
Confidence 56779999999987655544 5665555443 3 356788888877754 5677888999998876
No 189
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=85.43 E-value=2.8 Score=29.28 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=31.3
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hHHHHHHHh---hCCCCCCCcccC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAE---RLPFPMDCLYAD 164 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~-~~~~~~f~~---~~~fp~~~ll~D 164 (259)
..|...|||+|..-...|++ .|+..--+..+. ++..+++.+ ...+|. |+.|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~--i~i~ 56 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQ--IFIG 56 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCE--EEEC
Confidence 45678999999987776654 455555554443 333445544 356774 5555
No 190
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=85.26 E-value=2.7 Score=31.26 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+++| | -.+|||+|.+--.-|. +.|+..-.|..+
T Consensus 9 ~Vvv-y-sk~~Cp~C~~ak~~L~-------~~~i~~~~vdid 41 (99)
T TIGR02189 9 AVVI-F-SRSSCCMCHVVKRLLL-------TLGVNPAVHEID 41 (99)
T ss_pred CEEE-E-ECCCCHHHHHHHHHHH-------HcCCCCEEEEcC
Confidence 4444 3 3699999997665444 346655555554
No 191
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=85.25 E-value=2 Score=36.11 Aligned_cols=120 Identities=21% Similarity=0.290 Sum_probs=76.7
Q ss_pred ccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcE-EEEEeCC-ChH--HHHHHHhhCCCCCCCcccCCc-
Q 024977 92 KDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVK-LIAVGVG-TPN--KAQILAERLPFPMDCLYADPD- 166 (259)
Q Consensus 92 sdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~-vv~Vs~~-~~~--~~~~f~~~~~fp~~~ll~D~~- 166 (259)
+++.|. -+|+.-|+..|-..-..+....+.+...++..|+. +++|+-- +-+ .-....+...||.+ |.+..
T Consensus 58 ~~l~g~---DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~e--y~~~A~ 132 (211)
T COG2910 58 SDLAGH---DAVISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAE--YKPEAL 132 (211)
T ss_pred hhhcCC---ceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchh--HHHHHH
Confidence 567776 58888887777666777777888888888887775 6666432 211 11333344567753 44433
Q ss_pred --hHHHHHhCCcccccccccCCchhHHHHHHHHHHHHHhcCcccccCCCCCCccccCeEEEE-e-CC--eEEEEE
Q 024977 167 --RKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRSSVLQQGGMFVF-K-GK--QLLYAR 235 (259)
Q Consensus 167 --~~~~~~~Gv~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVi-d-~g--~V~y~~ 235 (259)
.++-+.+.-...+.|||++|... ..||.+.+-+++||.-++ + .| +|.|+-
T Consensus 133 ~~ae~L~~Lr~~~~l~WTfvSPaa~-------------------f~PGerTg~yrlggD~ll~n~~G~SrIS~aD 188 (211)
T COG2910 133 AQAEFLDSLRAEKSLDWTFVSPAAF-------------------FEPGERTGNYRLGGDQLLVNAKGESRISYAD 188 (211)
T ss_pred HHHHHHHHHhhccCcceEEeCcHHh-------------------cCCccccCceEeccceEEEcCCCceeeeHHH
Confidence 34444555556788899998631 236777788999998777 4 45 777643
No 192
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=84.84 E-value=1.8 Score=31.15 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=24.5
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
++.|-..|||+|..-...|.++..++ .++.+.-+..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECC
Confidence 44566889999999888777654322 24555555554
No 193
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=84.63 E-value=6.8 Score=34.47 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=40.6
Q ss_pred CCCCCCcEEecCCCCeEecccccccCCCc-EEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh
Q 024977 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGV-AVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTP 144 (259)
Q Consensus 73 G~~aPdf~l~d~~G~~v~lsdl~~~~~~~-vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~Vs~~~~ 144 (259)
.-..|+|...+.+|+.+++.+.... +. +|.+|+...+=..+......+.+.+. ... .+++|-|+..+-
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~g--kvSlV~l~s~~~ge~~~~sw~~p~~~~~~--~~~~~~~q~v~In~~e~ 168 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRG--KVSLVCLFSSAWGEEMVDSWTSPFLEDFL--QEPYGRVQIVEINLIEN 168 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCC--ceEEEEEeehHHHHHHHHHHhhHHHHHHh--hCCCCceEEEEEecchH
Confidence 4467899999999999988877643 23 44555544333334434332222221 223 788999987664
No 194
>PRK10824 glutaredoxin-4; Provisional
Probab=84.60 E-value=3.7 Score=31.67 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=29.9
Q ss_pred cEEEEEEcC----CCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHH-Hh---hCCCCCCCcccCC
Q 024977 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL-AE---RLPFPMDCLYADP 165 (259)
Q Consensus 101 ~vvL~f~r~----~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f-~~---~~~fp~~~ll~D~ 165 (259)
++|| |--+ +|||+|..-..-|.+. |+..-.+..+....++.. .+ .-.+|- |+.+.
T Consensus 16 ~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~G 78 (115)
T PRK10824 16 PILL-YMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKYANWPTFPQ--LWVDG 78 (115)
T ss_pred CEEE-EECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHHhCCCCCCe--EEECC
Confidence 4444 4555 5999999877766553 444434444332233333 33 346663 66654
No 195
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=83.83 E-value=3.4 Score=31.56 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=43.6
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC----hHHHHHHHhhCCCCCCCcccCCchHHHHHhCCc
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT----PNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~----~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
.+|...+|+.|+.-..-|.+ .|+.+..|.... .+.+.++.+..+...+ -+.+..+..|+.++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~-~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGID-PLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHH-HheeCCCcchhhCCch
Confidence 45678999999987766554 577666665432 3446666666653222 4777899999999864
No 196
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.70 E-value=4.4 Score=31.94 Aligned_cols=66 Identities=8% Similarity=0.142 Sum_probs=45.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC----ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~----~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.+|-..+|+.|+.-..- |++.|+.+..+... +.+.++.|.+..+...+ -+....+..|+.++...
T Consensus 2 i~iY~~~~C~~crkA~~~-------L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~-~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTW-------LNAHQLSYKEQNLGKEPLTKEEILAILTKTENGIE-SIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHHHH-------HHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHH-HhhccCcHHHHhCCcch
Confidence 456778999999985533 45567776666542 34668888886654322 45668889999988754
No 197
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=83.64 E-value=3 Score=34.41 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCC
Q 024977 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPM 158 (259)
Q Consensus 119 l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~ 158 (259)
.|++.+...++++.|+.++.+|.+++..+..|.+.+++|+
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 4788889999999999999999999999999999888883
No 198
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=81.35 E-value=11 Score=37.69 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=39.0
Q ss_pred CCcccCCCCCCcEEec-CCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHH
Q 024977 68 FPANVGDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESK 126 (259)
Q Consensus 68 ~~~~vG~~aPdf~l~d-~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~ 126 (259)
..+.+|..+|++.+.. .+++++.|.+.....++..+|+|-...-.+.....+..+.+..
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l 520 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFL 520 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHH
Confidence 4578999999999887 6788888876553323455665554444456666666655544
No 199
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=80.50 E-value=13 Score=28.21 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.+++|=..+.||.-..-..+|++.+.+..+. +.+.-|-.-.. -|-.+.+++.|||..
T Consensus 20 ~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~------------------R~vSn~IAe~~~V~H 77 (105)
T PF11009_consen 20 KPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVIEY------------------RPVSNAIAEDFGVKH 77 (105)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGG------------------HHHHHHHHHHHT---
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeC------------------chhHHHHHHHhCCCc
Confidence 56777777899999999999999888766443 55444432111 123567777888765
No 200
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=74.97 E-value=5.1 Score=32.21 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEE
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLI 137 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv 137 (259)
++.|+.|--+.||+|...-+.+.++..++ ..++.+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 55666666899999999999998887776 3355554
No 201
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=74.86 E-value=12 Score=28.51 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=45.7
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCC-CCcccCCchHHHHHhCCcc
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPM-DCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~-~~ll~D~~~~~~~~~Gv~~ 177 (259)
.+|-...|..|+....-|.+ .|+.+..+.. + +.+.++.|.+.++.+. . =+....+..|+.+++..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~-~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-------KGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAR-EMIRTKEALYKELGLSD 71 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCcCHHHHHHHHHHcCCchHH-HHHhcCCcHHHHcCCCc
Confidence 46778999999987655544 5666555543 3 3466888888877761 1 16778899999998864
No 202
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=74.18 E-value=30 Score=33.55 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=48.2
Q ss_pred CcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHH
Q 024977 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~ 148 (259)
...+|..+|+..+. .+|+.+++.|+.+. +-++|.|- .. .. .. ...+.. .....++.++.+..+....
T Consensus 426 ~~~pG~r~p~~~~~-~~~~~~~l~dl~g~--~f~ll~~~-~~-~~--~~---~~~~~~-~~~~~~~~~~~~~~~~~~~-- 492 (547)
T PRK08132 426 GPVPGAPAPDAPVR-ADGEPGWLLDLLGG--GFTLLLFG-DD-AA--AA---ALLQAL-AAAALPVRVVAVVPAGAAQ-- 492 (547)
T ss_pred CCCCCCCCCCCccc-CCCCceEHHHhcCC--CEEEEEec-CC-ch--hh---hhhhhh-hccCCceEEEEEecCcccc--
Confidence 35689999998877 45777899999975 34555442 21 10 11 111111 1223455666665443110
Q ss_pred HHHhhCCCCCCCcccCCchHHHHHhCC
Q 024977 149 ILAERLPFPMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 149 ~f~~~~~fp~~~ll~D~~~~~~~~~Gv 175 (259)
.+.. .+.|.++.+++.||+
T Consensus 493 -----~~~~---~~~d~~~~~~~~~~~ 511 (547)
T PRK08132 493 -----AAAG---VLEDADGLAAERYDA 511 (547)
T ss_pred -----cCcc---cccCcccHHHHHhCC
Confidence 0122 467888887777765
No 203
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=73.18 E-value=11 Score=26.31 Aligned_cols=30 Identities=33% Similarity=0.709 Sum_probs=21.3
Q ss_pred CCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC
Q 024977 109 HFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (259)
Q Consensus 109 ~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~ 141 (259)
+.+||.|......+++...++ |+.+-.+..
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~ 36 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDI 36 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEET
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEc
Confidence 777999998888888777655 455544443
No 204
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=73.11 E-value=6.3 Score=32.83 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=18.6
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHH
Q 024977 101 VAVVALLRHFGCPCCWELASALKE 124 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~ 124 (259)
+..|+.|--..||+|+...+.+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 445555558999999999988876
No 205
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=72.51 E-value=3.1 Score=40.55 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC--CcEEEEEeCCChHHHH
Q 024977 102 AVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTPNKAQ 148 (259)
Q Consensus 102 vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~Vs~~~~~~~~ 148 (259)
.+|-|| ++||+.|+.+.|.++++...++.- =+.|.+|.+.+.+..+
T Consensus 60 ~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~ 107 (606)
T KOG1731|consen 60 KLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK 107 (606)
T ss_pred HHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh
Confidence 455555 999999999999999998877643 2556678887766543
No 206
>PTZ00062 glutaredoxin; Provisional
Probab=72.35 E-value=12 Score=31.75 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=34.0
Q ss_pred cccccccCCCcEEEEEE---cCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHH-Hh---hCCCCCCCccc
Q 024977 91 FKDLWDQNEGVAVVALL---RHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL-AE---RLPFPMDCLYA 163 (259)
Q Consensus 91 lsdl~~~~~~~vvL~f~---r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f-~~---~~~fp~~~ll~ 163 (259)
+.++... .|+||+-- ..++||+|+.-..-|++ .|+....+..+....+++. .+ ...+|. |+.
T Consensus 106 v~~li~~--~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPq--VfI 174 (204)
T PTZ00062 106 IERLIRN--HKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFEDPDLREELKVYSNWPTYPQ--LYV 174 (204)
T ss_pred HHHHHhc--CCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCCCHHHHHHHHHHhCCCCCCe--EEE
Confidence 3344544 35555544 23699999987666553 4666555555433333333 23 345663 555
Q ss_pred C
Q 024977 164 D 164 (259)
Q Consensus 164 D 164 (259)
+
T Consensus 175 ~ 175 (204)
T PTZ00062 175 N 175 (204)
T ss_pred C
Confidence 5
No 207
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=72.24 E-value=11 Score=26.40 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=29.6
Q ss_pred ccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhc
Q 024977 217 VLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICC 254 (259)
Q Consensus 217 ~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~ 254 (259)
..+.+|.|-|- +|+++|.-... +..|+.++|++.++
T Consensus 36 ~~~~~G~Fev~~~g~~v~sk~~~--~~fp~~~~~~~~ir 72 (72)
T TIGR02174 36 TPPTTGAFEVTVNGQLVWSKLRG--GGFPEPEELKQLIR 72 (72)
T ss_pred ecCCCcEEEEEECCEEEEEeccC--CCCCCHHHHHHhhC
Confidence 34578999998 89999988765 46999999998764
No 208
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=70.19 E-value=10 Score=32.74 Aligned_cols=35 Identities=17% Similarity=0.484 Sum_probs=25.2
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEE
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAV 139 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 139 (259)
+..|+.|--..||+|+...+.+.++ .+.|+++..+
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 4555555699999999988887764 3457777654
No 209
>PRK06184 hypothetical protein; Provisional
Probab=70.10 E-value=37 Score=32.52 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=47.8
Q ss_pred CcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHH
Q 024977 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~ 148 (259)
.+.+|..+|+..+.+.+|+.+++-|+.+. ++.++|.|-...+ . .....|+.++.|....
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~-~~~~ll~~~~~~~--------~-------~~~~~~~~~~~~~~~~----- 443 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRG-PHWTLLAFGAGAA--------A-------ILARRGLRIHRVGDAA----- 443 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCC-CcEEEEEecCCch--------h-------hhhhcCceEEEecccC-----
Confidence 46789999999987777888888888753 1355555422111 0 0124467777665432
Q ss_pred HHHhhCCCCCCCcccCCchHHHHHhCC
Q 024977 149 ILAERLPFPMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 149 ~f~~~~~fp~~~ll~D~~~~~~~~~Gv 175 (259)
... .+.|+++.+++.||+
T Consensus 444 ------~~~---~~~d~~g~~~~~~~~ 461 (502)
T PRK06184 444 ------EGG---DLVDDAGHFRDAYGL 461 (502)
T ss_pred ------CCC---ceeCCCccHHHHhcC
Confidence 112 467888887777765
No 210
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=69.42 E-value=54 Score=25.88 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=29.4
Q ss_pred EecccccccCCCcEEEEEEcCCC--CHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 89 VLFKDLWDQNEGVAVVALLRHFG--CPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 89 v~lsdl~~~~~~~vvL~f~r~~~--Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
.++.++... .+..++|+++.- +|-+..-.--|.++.++|....++++-|..+
T Consensus 25 ~~~~~~~~~--~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD 78 (132)
T PRK11509 25 SRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78 (132)
T ss_pred ccHHHHHhC--CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC
Confidence 456666654 356666776543 4555555555666666664333666666643
No 211
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=68.60 E-value=12 Score=28.89 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=22.4
Q ss_pred ecccccccCCCcEEEEEEcC--CCCHhhHHHHHHHHHHHHHHhhCC--cEEEEEeCCC
Q 024977 90 LFKDLWDQNEGVAVVALLRH--FGCPCCWELASALKESKARFDSAG--VKLIAVGVGT 143 (259)
Q Consensus 90 ~lsdl~~~~~~~vvL~f~r~--~~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~Vs~~~ 143 (259)
++.+...+. ..++|-|| + .||. . ++.+.++.+++.... +.|.-|..++
T Consensus 10 nF~~~v~~~-~~vlV~F~-A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d 61 (116)
T cd03007 10 TFYKVIPKF-KYSLVKFD-TAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKD 61 (116)
T ss_pred hHHHHHhcC-CcEEEEEe-CCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEeccc
Confidence 344554442 24444454 8 6666 2 244555555543221 3333366643
No 212
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=68.30 E-value=8.5 Score=26.90 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=24.3
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEE
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAV 139 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 139 (259)
.+|....||.|...-+.+.+... ....++++.-+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~-~~~~~~~~~~~ 35 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLY-ADDGGVRVVYR 35 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHh-hcCCcEEEEEe
Confidence 34558899999999999988763 23445665544
No 213
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=67.71 E-value=4.5 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.359 Sum_probs=28.7
Q ss_pred ccccCeEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhcc
Q 024977 217 VLQQGGMFVFK-GKQLLYARKDEGTGDHASLDDVFDICCK 255 (259)
Q Consensus 217 ~~~~gg~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~~ 255 (259)
....+|.|-|. +|+++|.-...+ ..|+.++|++.+++
T Consensus 38 ~~~~~G~FEV~v~g~lI~SK~~~g--~fP~~~~i~~~I~~ 75 (76)
T PF10262_consen 38 SPGSTGAFEVTVNGELIFSKLESG--RFPDPDEIVQLIRD 75 (76)
T ss_dssp EEESTT-EEEEETTEEEEEHHHHT--SSS-HHHHHHHHHH
T ss_pred EeccCCEEEEEEccEEEEEehhcC--CCCCHHHHHHHHhc
Confidence 34568999998 999999877654 89999999998864
No 214
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=64.85 E-value=14 Score=25.05 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=28.9
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCCc
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPD 166 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~~ 166 (259)
+|...|||+|++-.-.|.+. ....+++-|..... ..+|.+ .-..| ++.+.+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~--~~~~~~~np~~~vP---~L~~~~ 56 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVELKNK--PAEMLAASPKGTVP---VLVLGN 56 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCC--CHHHHHHCCCCCCC---EEEECC
Confidence 45678999998876666542 22345555554322 234544 34667 666543
No 215
>PRK10853 putative reductase; Provisional
Probab=63.25 E-value=20 Score=27.52 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=47.1
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
+.+|....|..|+..+.-|. +.|+.+..+.. + +.+.++.|.+..++. -+....+..|+.++..
T Consensus 2 i~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~---~l~n~~~~~~r~L~~~ 68 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE-------AQGIDYRFHDYRVDGLDSELLQGFIDELGWE---ALLNTRGTTWRKLDET 68 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH-------HcCCCcEEeehccCCcCHHHHHHHHHHcCHH---HHHhcCCchHHhCCHh
Confidence 56788999999998775554 45776666643 2 456788888887876 5778889999998875
No 216
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=63.11 E-value=9.7 Score=34.50 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC---CcEEEE-EeCCCh
Q 024977 102 AVVALLRHFGCPCCWELASALKESKARFDSA---GVKLIA-VGVGTP 144 (259)
Q Consensus 102 vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~---gv~vv~-Vs~~~~ 144 (259)
+|++.|-+.||++.+.-.|-+.+....+++. |-.|.| |.++..
T Consensus 15 lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e 61 (375)
T KOG0912|consen 15 LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE 61 (375)
T ss_pred EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh
Confidence 5555555999999999999999988777654 334555 455443
No 217
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=61.18 E-value=21 Score=25.23 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=28.7
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChH
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~ 145 (259)
|++|-..+|+.|..-...|.++.. +.++.+..|..++..
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~ 40 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDP 40 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCH
Confidence 567889999999988888777543 456888888877544
No 218
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=60.25 E-value=30 Score=29.29 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=39.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEe-CCChHHHHHHHhhCCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG-VGTPNKAQILAERLPFP 157 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs-~~~~~~~~~f~~~~~fp 157 (259)
..+.+|+. ..|+.|...+..+.. ....+.|..|+ .++.+.++.|+...+.|
T Consensus 110 ~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Id 161 (200)
T TIGR03759 110 GRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQID 161 (200)
T ss_pred CeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCC
Confidence 56777886 899999999988855 34567777776 45677899999977776
No 219
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=58.47 E-value=32 Score=26.19 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=43.7
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.+|....|..|+....-| ++.|+.+-.+.. + +.+.++.|.+.+++. -+....+..|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~L-------~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~---~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKALL-------EAAGHEVEVRDLLTEPWTAETLRPFFGDLPVA---EWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHHH-------HHcCCCcEEeehhcCCCCHHHHHHHHHHcCHH---HHHhcccHHHHhcCCCc
Confidence 3467789999999766444 445666555443 3 346688888877765 46667788999877653
No 220
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=58.44 E-value=52 Score=24.95 Aligned_cols=56 Identities=27% Similarity=0.266 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh-hCCCCCCCcccCCchHHHHHhCCccc
Q 024977 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAE-RLPFPMDCLYADPDRKVYNLLGLYHG 178 (259)
Q Consensus 120 ~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~-~~~fp~~~ll~D~~~~~~~~~Gv~~~ 178 (259)
.=|++..+++++.++.=++|+.++.+...+..+ --+.+ +.-..--++++.+|+.+-
T Consensus 38 ~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~lapgl~---l~P~sgddLa~rL~l~hY 94 (105)
T TIGR03765 38 QWLQQNAAALKSLGAVGLVVNVETAAALQRLRALAPGLP---LLPVSGDDLAERLGLRHY 94 (105)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCc---ccCCCHHHHHHHhCCCcc
Confidence 345566777888888888999999988877777 34666 666777889999998764
No 221
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=58.02 E-value=94 Score=28.61 Aligned_cols=98 Identities=26% Similarity=0.315 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCCchHHHHH-hC-C
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDRKVYNL-LG-L 175 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~~~~~~~~-~G-v 175 (259)
|+++--...+-.-.-...+.++.+ +...|+++|=|+..+.+...+|.+ +++.| |+.|-.-. |+. +. .
T Consensus 21 PI~VQSMTnT~T~Dv~aTv~QI~~----L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vP---LVaDiHf~-~rla~~~~ 92 (361)
T COG0821 21 PIVVQSMTNTDTADVEATVAQIKA----LERAGCDIVRVTVPDMEAAEALKEIKQRLNVP---LVADIHFD-YRLALEAA 92 (361)
T ss_pred ceEEEeccCCCcccHHHHHHHHHH----HHHcCCCEEEEecCCHHHHHHHHHHHHhCCCC---EEEEeecc-HHHHHHhh
Confidence 566655555555444455555554 456899999999999887777765 79999 89987644 222 11 1
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCc
Q 024977 176 YHGVGRTFFNPASAKVFSRFEALRKAVQNYT 206 (259)
Q Consensus 176 ~~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~ 206 (259)
..+.....+||.......+++.+.+..+..+
T Consensus 93 ~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g 123 (361)
T COG0821 93 ECGVDKVRINPGNIGFKDRVREVVEAAKDKG 123 (361)
T ss_pred hcCcceEEECCcccCcHHHHHHHHHHHHHcC
Confidence 1223334578865433445666666666543
No 222
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=58.00 E-value=14 Score=32.41 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=27.3
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA 132 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~ 132 (259)
||+.++|.-..|||+|-.+.=.|-.....|..-
T Consensus 58 Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 589999999999999999888887777766443
No 223
>PRK10026 arsenate reductase; Provisional
Probab=57.08 E-value=41 Score=26.86 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=46.3
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEe--CC--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG--VG--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs--~~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.+|....|..|+..+.-|.+ .|+.+..+. .+ +.+.++.|.+.++.+.. -+....+..|+.+++..
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~-~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADMGISVR-ALLRKNVEPYEELGLAE 73 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHH-HHHHcCCchHHHcCCCc
Confidence 567789999999988766554 566655554 33 34678888887776422 35567888999998764
No 224
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=56.48 E-value=48 Score=22.77 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=28.7
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcE--EEEEeCCChHHHHHHHh---hCCCCCCCcccCC
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVK--LIAVGVGTPNKAQILAE---RLPFPMDCLYADP 165 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~--vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~ 165 (259)
..|...+||+|+.-.-.|.+ +|+. ++-|..+. ....+|.+ .-.+| ++.|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~-------~gi~y~~~~v~~~~-~~~~~~~~~~p~~~vP---~l~~~ 57 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE-------LELDVILYPCPKGS-PKRDKFLEKGGKVQVP---YLVDP 57 (77)
T ss_pred eEecCCCCchHHHHHHHHHH-------cCCcEEEEECCCCh-HHHHHHHHhCCCCccc---EEEeC
Confidence 45667899999976655554 4554 44443222 12345555 34678 66664
No 225
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=56.14 E-value=47 Score=26.62 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh-hCCCCCCCcccCCchHHHHHhCCccc
Q 024977 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAE-RLPFPMDCLYADPDRKVYNLLGLYHG 178 (259)
Q Consensus 119 l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~-~~~fp~~~ll~D~~~~~~~~~Gv~~~ 178 (259)
..=|++..+++++.++.=++|+.++.+.+++..+ --+.+ |+-..-.++++.+|+.+-
T Consensus 75 ~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~lapgl~---l~P~sgddLA~rL~l~HY 132 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLAPGLP---LLPVSGDDLARRLGLSHY 132 (142)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCe---ecCCCHHHHHHHhCCCcc
Confidence 3345666777888888889999999998888877 34666 666777889999998764
No 226
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=55.63 E-value=28 Score=30.42 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=24.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEE
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAV 139 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 139 (259)
+.+|+.|--.-||+|+....++.++.+ ..++++.-+
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~---~g~V~v~~i 153 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVD---SGKVQLRHI 153 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhh---cCceEEEEE
Confidence 455555559999999999888877543 223655433
No 227
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=54.40 E-value=16 Score=30.78 Aligned_cols=36 Identities=22% Similarity=0.623 Sum_probs=23.7
Q ss_pred cEEEEEEcCCCCHhhHHHHHHH---HHHHHHHhhCCcEEEE
Q 024977 101 VAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIA 138 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~ 138 (259)
+.|+-|| ...||.|...-+.+ ..+.+.+ ..++.++-
T Consensus 39 ~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~~ 77 (207)
T PRK10954 39 PQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMTK 77 (207)
T ss_pred CeEEEEe-CCCCccHHHhcccccchHHHHHhC-CCCCeEEE
Confidence 6677776 78999999976654 4444444 34555553
No 228
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=52.95 E-value=11 Score=30.97 Aligned_cols=67 Identities=13% Similarity=0.283 Sum_probs=29.5
Q ss_pred cEEEEEEcCCCCHhhHHHHH-HHHH--HHHHHhhCCcEEEEEeCCC-hHHHHHHH---h----hCCCCCCCcccCCchHH
Q 024977 101 VAVVALLRHFGCPCCWELAS-ALKE--SKARFDSAGVKLIAVGVGT-PNKAQILA---E----RLPFPMDCLYADPDRKV 169 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~-~L~~--~~~~~~~~gv~vv~Vs~~~-~~~~~~f~---~----~~~fp~~~ll~D~~~~~ 169 (259)
|.|++.+-..||..|..... .+++ ..+.+ +....-|-|..+. ++--+.|. + .-+||.. ++.+|+++.
T Consensus 38 KpIfl~ig~~~C~wChvM~~esf~d~eVa~~l-N~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~-vfltPdg~p 115 (163)
T PF03190_consen 38 KPIFLSIGYSWCHWCHVMERESFSDPEVAEYL-NRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT-VFLTPDGKP 115 (163)
T ss_dssp --EEEEEE-TT-HHHHHHHHHTTT-HHHHHHH-HHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE-EEE-TTS-E
T ss_pred CcEEEEEEecCCcchhhhcccCcCCHHHHHHH-hCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce-EEECCCCCe
Confidence 56666666999999998654 2221 11212 2223333344443 33223332 2 3577754 888998764
No 229
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.30 E-value=38 Score=28.91 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=32.3
Q ss_pred cCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhC
Q 024977 83 TAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA 132 (259)
Q Consensus 83 d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~ 132 (259)
..+++.+...+..+ ++.++.|.-.-||+|.+.++.+.+.+-...+.
T Consensus 71 ~~~~~~~~~G~~~~----~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 71 TPDGKDVVLGNPYA----PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred cCCCCcccccCCCC----CceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 35666666666665 46666666999999999999998865544333
No 230
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=51.51 E-value=44 Score=25.23 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=44.4
Q ss_pred EEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
.+|-...|..|+..+.-|+ +.|+.+..+.. + +.+.+..|.+.++...+ -+....+..|+.+++..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~-~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 2 TIYHNPRCSKSRNALALLE-------EAGIEPEIVEYLKTPPTAAELRELLAKLGISPR-DLLRTKEAPYKELGLAD 70 (112)
T ss_pred EEEECCCCHHHHHHHHHHH-------HCCCCeEEEecccCCcCHHHHHHHHHHcCCCHH-HHHhcCCchHHHcCCCc
Confidence 4667899999998765544 45666555543 3 34668888887664322 45667888999988764
No 231
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=50.97 E-value=43 Score=25.79 Aligned_cols=66 Identities=11% Similarity=0.229 Sum_probs=46.2
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEE--eCC--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCc
Q 024977 103 VVALLRHFGCPCCWELASALKESKARFDSAGVKLIAV--GVG--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 103 vL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V--s~~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
.+.+|...-|..|+.-..- |++.|+..-.+ ..+ +.+.+.+|.+..+.+.+ -+....+..|+.+|..
T Consensus 2 ~itiy~~p~C~t~rka~~~-------L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~-~li~t~~~~~r~L~~~ 71 (117)
T COG1393 2 MITIYGNPNCSTCRKALAW-------LEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVE-ELINTRGTTYRELNLD 71 (117)
T ss_pred eEEEEeCCCChHHHHHHHH-------HHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHH-HHHHhccchHHHcCCc
Confidence 3667889999999876654 44567765443 433 35678889887764433 5677899999999954
No 232
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=49.81 E-value=40 Score=25.47 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 102 vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
.|++|- -+|||+|.. ++.|-. ..|+...+|-.|
T Consensus 15 ~VVifS-Ks~C~~c~~-~k~ll~------~~~v~~~vvELD 47 (104)
T KOG1752|consen 15 PVVIFS-KSSCPYCHR-AKELLS------DLGVNPKVVELD 47 (104)
T ss_pred CEEEEE-CCcCchHHH-HHHHHH------hCCCCCEEEEcc
Confidence 344554 599999998 443322 255554444433
No 233
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=48.08 E-value=57 Score=29.01 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=52.4
Q ss_pred ccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHH
Q 024977 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (259)
Q Consensus 71 ~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f 150 (259)
+.-+..|-|++.|.+|+.+-.+.-.+. +++-+|+-.- -.....+.++++..+++ ..+++|+.|+-+...+++
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~---~~~gvf~s~q--edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl~-- 148 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGE---KSIGLLCFRQ--EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKLK-- 148 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCC---ceEEEEECCH--HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHHh--
Confidence 445668999999999999988865543 4444443110 12344555555555555 367999999988876542
Q ss_pred HhhCCCCCCCcccCC
Q 024977 151 AERLPFPMDCLYADP 165 (259)
Q Consensus 151 ~~~~~fp~~~ll~D~ 165 (259)
.+++.|. ++-|+
T Consensus 149 ~e~l~F~---fiP~~ 160 (270)
T TIGR00995 149 VEGIGFR---FLPDP 160 (270)
T ss_pred hcCccEE---EeCCH
Confidence 2345555 55553
No 234
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=46.77 E-value=65 Score=31.18 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=53.9
Q ss_pred CcccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHH
Q 024977 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (259)
Q Consensus 69 ~~~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~ 148 (259)
...+|+.+|+..+.+..|....+.++.+. +.++|.| ... +.. .+. ......+...|+.+|.+.......
T Consensus 410 ~~~~G~~~p~~~~~~~~~~~~~~d~~~~~--~~~ll~~-~~~--~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~-- 478 (538)
T PRK06183 410 HSPVGTLFPQPRVELGGGDRGLLDDVLGP--GFAVLGW-GCD--PLA--GLS--DEQRARWRALGARFVQVVPAVQAH-- 478 (538)
T ss_pred CCCcccCcCCCeeEcCCCCcccchhccCC--ceEEEEe-cCC--chh--cCC--HHHHHHHHHcCCeEEEEecccccc--
Confidence 34689999999888766665567778876 4556544 111 111 111 111123566788888887653221
Q ss_pred HHHhhCCCCCCCcccCCchHHHHHhCC
Q 024977 149 ILAERLPFPMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 149 ~f~~~~~fp~~~ll~D~~~~~~~~~Gv 175 (259)
.-+.+ .+.|.++.+.+.|+.
T Consensus 479 ----~~~~~---~~~d~~g~~~~~~~~ 498 (538)
T PRK06183 479 ----TAQDD---HDSDVDGALRAWLAR 498 (538)
T ss_pred ----cCCCc---eeecCCchHHHHHHh
Confidence 01233 678999998888875
No 235
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=42.22 E-value=58 Score=30.64 Aligned_cols=32 Identities=13% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
.|-.+|||+|..--.-|. +.|+..-.|..+..
T Consensus 6 vys~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~ 37 (410)
T PRK12759 6 IYTKTNCPFCDLAKSWFG-------ANDIPFTQISLDDD 37 (410)
T ss_pred EEeCCCCHHHHHHHHHHH-------HCCCCeEEEECCCC
Confidence 445899999997655544 46777666666543
No 236
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=41.84 E-value=69 Score=24.93 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=44.3
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC--C--ChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCc
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~--~--~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~ 176 (259)
+.+|....|..|+....-|. +.|+.+-.+.. + +.+.++.|.+.+++. -+....+..|+.++..
T Consensus 3 i~iY~~p~Cst~RKA~~~L~-------~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~---~lin~~~~~~r~l~~~ 69 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALK-------ASGHDVEVQDILKEPWHADTLRPYFGNKPVG---SWFNRAAPRVKSGEVN 69 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCcEEEeccCCCcCHHHHHHHHHHcCHH---HHHhccchHhhhCCCC
Confidence 45677899999998765544 46776666543 3 356788888887654 4666778889887754
No 237
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=41.30 E-value=26 Score=23.83 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=20.2
Q ss_pred ccccCeEEEEeCCeEEEEEecCC
Q 024977 217 VLQQGGMFVFKGKQLLYARKDEG 239 (259)
Q Consensus 217 ~~~~gg~fVid~g~V~y~~~~~~ 239 (259)
.+..+++||+|.|.-+|.|.+++
T Consensus 14 ~L~s~~~yIld~~~~i~vW~G~~ 36 (76)
T PF00626_consen 14 SLNSDDCYILDCGYEIFVWVGKK 36 (76)
T ss_dssp GEETTSEEEEEESSEEEEEEHTT
T ss_pred HcCCCCEEEEEeCCCcEEEEecc
Confidence 56678999999888999999887
No 238
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=39.66 E-value=64 Score=31.53 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=28.8
Q ss_pred CcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 100 ~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+++.+-.|-..+||+|..-...++++..+.. ++..-.|-..
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~ 516 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVS 516 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECc
Confidence 4776666669999999988888887776542 5655555433
No 239
>PF08925 DUF1907: Domain of Unknown Function (DUF1907); InterPro: IPR015021 The structure of this domain displays an alpha-beta-beta-alpha four layer topology, with an HxHxxxxxxxxxH motif that coordinates a zinc ion, and an acetate anion at a site that likely supports the enzymatic activity of an ester hydrolase []. ; GO: 0005634 nucleus; PDB: 1XCR_B.
Probab=38.74 E-value=24 Score=31.58 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCcccccCCCCCCccccCeEEEEeCCeEEEEEecCCCCCCC
Q 024977 195 FEALRKAVQNYTIEATPDDRSSVLQQGGMFVFKGKQLLYARKDEGTGDHA 244 (259)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~gg~fVid~g~V~y~~~~~~~~d~~ 244 (259)
...|++++... . ++ ...-+||+|||..|++.+ |+++++..-|
T Consensus 167 ~~~iR~~L~~~-Y----g~--~~VglGG~F~i~~Gkak~-HVMpdFs~~P 208 (284)
T PF08925_consen 167 VTCIRKALEKH-Y----GD--KPVGLGGVFLIKNGKAKQ-HVMPDFSKCP 208 (284)
T ss_dssp HHHHHHHHHHH-H----TT--S--EEEEEEEEEESEEEE-EE--S--SS-
T ss_pred HHHHHHHHHHH-c----CC--CceecceEEEEeCCcEEE-EecCCCCCCC
Confidence 34566666542 1 11 267899999999888776 7888876554
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=37.84 E-value=94 Score=24.93 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=34.5
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCC
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPM 158 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~ 158 (259)
..=+.+|..+.|..|...+..|+ +.|++|=.+..++-.. .+++++.|.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~d~~a---lK~~~gIp~ 72 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETDDFLA---LKRRLGIPY 72 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecCcHHH---HHHhcCCCh
Confidence 34556677999999999887765 4788888888777553 444566663
No 241
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=36.12 E-value=1.3e+02 Score=22.84 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=28.3
Q ss_pred CcEEEEEEcCC----CCHhhHHHH--HHHHHHHHHHhhCCcEEEEEeCCChHH
Q 024977 100 GVAVVALLRHF----GCPCCWELA--SALKESKARFDSAGVKLIAVGVGTPNK 146 (259)
Q Consensus 100 ~~vvL~f~r~~----~Cp~C~~~l--~~L~~~~~~~~~~gv~vv~Vs~~~~~~ 146 (259)
+|.+++++... ||.+|+..+ +++.+.. +.+.-+++....+.+.
T Consensus 17 ~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~eg 65 (116)
T cd02991 17 LRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPEG 65 (116)
T ss_pred CCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChHH
Confidence 46777777777 888997754 4444443 3466677777776664
No 242
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=34.06 E-value=52 Score=20.86 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=26.4
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCC
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADP 165 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~ 165 (259)
+|-..+||.|..-...|... ....+++-+..+..... .+.+ ....| ++.+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P---~l~~~ 56 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQE-EFLALNPLGKVP---VLEDG 56 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCH-HHHhcCCCCCCC---EEEEC
Confidence 34467899999765555442 22344555554433222 3444 34566 45544
No 243
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=33.24 E-value=96 Score=20.51 Aligned_cols=19 Identities=16% Similarity=-0.005 Sum_probs=13.8
Q ss_pred EEcCCCCHhhHHHHHHHHH
Q 024977 106 LLRHFGCPCCWELASALKE 124 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~ 124 (259)
.|...+||+|+.-.-.|.+
T Consensus 3 ly~~~~~~~~~~v~~~l~~ 21 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAE 21 (73)
T ss_pred EEECCCChhHHHHHHHHHH
Confidence 4557789999987666543
No 244
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=33.03 E-value=93 Score=25.03 Aligned_cols=40 Identities=15% Similarity=0.449 Sum_probs=28.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~ 143 (259)
|.||.-.-||+|....+.|.++..++.+..++...+....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 4455589999999999999999888733344444454333
No 245
>PRK10200 putative racemase; Provisional
Probab=32.97 E-value=83 Score=27.02 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhCCcEEEEEeCCChHHH-HHHHhhCCCC
Q 024977 118 LASALKESKARFDSAGVKLIAVGVGTPNKA-QILAERLPFP 157 (259)
Q Consensus 118 ~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~-~~f~~~~~fp 157 (259)
-.+.|.+....+++.|+++++|.+++.... ....+.++.|
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iP 100 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLP 100 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 457788888889999999999999997653 3334467888
No 246
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=32.42 E-value=48 Score=26.61 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCC
Q 024977 124 ESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPM 158 (259)
Q Consensus 124 ~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~ 158 (259)
+...++++.|+.++.||.+....++.+++.++++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 55666778899999999998888888888888874
No 247
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=32.09 E-value=3e+02 Score=25.43 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=56.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCCchHHHHHh-CCc
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDRKVYNLL-GLY 176 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~~~~~~~~~-Gv~ 176 (259)
|+++--.-.+-.-.-...+.++.+ +.+.|+++|=|...+.+..+++.+ +.+.| |+.|-.-....++ -+.
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~----L~~aGceiVRvavp~~~~A~al~~I~~~~~iP---lVADIHFd~~lAl~a~~ 91 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRA----LEEAGCDIVRVTVPDRESAAAFEAIKEGTNVP---LVADIHFDYRLAALAMA 91 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHH----HHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCC---EEEeeCCCcHHHHHHHH
Confidence 566655444433333333444433 567899999999998877766654 78888 8898754322222 122
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHhcCc
Q 024977 177 HGVGRTFFNPASAKVFSRFEALRKAVQNYT 206 (259)
Q Consensus 177 ~~~~~~~~~p~~~~v~~~~~~l~~~~~~~~ 206 (259)
.+...-.+||....-..+++.+.+..+..+
T Consensus 92 ~g~dkiRINPGNig~~e~v~~vv~~ak~~~ 121 (346)
T TIGR00612 92 KGVAKVRINPGNIGFRERVRDVVEKARDHG 121 (346)
T ss_pred hccCeEEECCCCCCCHHHHHHHHHHHHHCC
Confidence 233334467754222334566666666543
No 248
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=31.91 E-value=2e+02 Score=21.24 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=36.8
Q ss_pred CCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC----ChHHHHHHHhhCCCCCCCcccCCchHHHHHhC
Q 024977 109 HFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLG 174 (259)
Q Consensus 109 ~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~----~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~G 174 (259)
...|..|+..+.-| ++.|+.+..+..- +.+.+.+|.+.++...+ =+.+..+..|+.++
T Consensus 3 ~~~C~t~rka~~~L-------~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~-~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKWL-------EENGIEYEFIDYKKEPLSREELRELLSKLGNGPD-DLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHHH-------HHTT--EEEEETTTS---HHHHHHHHHHHTSSGG-GGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHHH-------HHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHH-HHhcCccchHhhhh
Confidence 56799998776554 4578887777664 34567788876553222 57788999999999
No 249
>PHA03075 glutaredoxin-like protein; Provisional
Probab=31.35 E-value=75 Score=24.63 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEE
Q 024977 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKLI 137 (259)
Q Consensus 102 vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv 137 (259)
-+|+.|--+.|+.|...-..|.++.++++=..|.++
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEee
Confidence 356666799999999988888777766654444443
No 250
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=31.18 E-value=94 Score=22.59 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCC
Q 024977 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPF 156 (259)
Q Consensus 118 ~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~f 156 (259)
..+.+.+...++++.|+.++.+|......++.+.+..++
T Consensus 25 ~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 25 LYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 345566667777888999999998888888888876554
No 251
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=31.05 E-value=1.3e+02 Score=22.77 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=33.1
Q ss_pred CeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeC
Q 024977 87 EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (259)
Q Consensus 87 ~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~ 141 (259)
+.-.|+++.++ ..-++-|+.--+|| -..+.....++.+.|+++|-++.
T Consensus 26 r~g~F~~y~~~--~~elvgf~~CgGCp-----g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 26 RKGAFARYDDE--DVELVGFFTCGGCP-----GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccCccccCCCC--CeEEEEEeeCCCCC-----hhHHHHHHHHHHHCCCCEEEEcC
Confidence 33456666653 25677777777788 55566666677788999888875
No 252
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=31.05 E-value=67 Score=27.42 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCC-----cccCCchHH
Q 024977 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDC-----LYADPDRKV 169 (259)
Q Consensus 120 ~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~-----ll~D~~~~~ 169 (259)
|.+.++...+++.|++++.||-+-..-+.--+.+++.|..| |+.|.+|++
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~ 145 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKY 145 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcc
Confidence 34556666778899999999977655444444477777543 445666654
No 253
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=30.82 E-value=67 Score=25.66 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCC
Q 024977 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADP 165 (259)
Q Consensus 118 ~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~ 165 (259)
....|.++..++++.|+.++.+..+..+.+.++++.++... |+++.
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--V~~~~ 96 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATA--VYFNE 96 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESE--EEEE-
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCe--eEecc
Confidence 46778888899999999999998888888888888655442 55554
No 254
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=30.70 E-value=1.1e+02 Score=25.20 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=48.2
Q ss_pred CCCCcEEecCCCCeEeccc--ccccCCCcEEEEEEcCCCCHhhHH-HHHHHHHHHHHHhhCCc--EEEEEeCCC------
Q 024977 75 LLGDFSIFTAAGEPVLFKD--LWDQNEGVAVVALLRHFGCPCCWE-LASALKESKARFDSAGV--KLIAVGVGT------ 143 (259)
Q Consensus 75 ~aPdf~l~d~~G~~v~lsd--l~~~~~~~vvL~f~r~~~Cp~C~~-~l~~L~~~~~~~~~~gv--~vv~Vs~~~------ 143 (259)
-.|++.+++... +.+.. |... +=+.|++-.=.+-++.=.. --+++.+...++++.+. +|+.||.+.
T Consensus 17 ~~P~l~V~si~~--I~~~~~~Lk~~-Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~ 93 (168)
T PF09419_consen 17 LLPHLYVPSIRD--IDFEANHLKKK-GIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP 93 (168)
T ss_pred cCCCEEcCChhh--CCcchhhhhhc-CceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc
Confidence 356666655433 33333 5543 2267777776666644333 34677777777777665 478887762
Q ss_pred -hHHHHHHHhhCCCC
Q 024977 144 -PNKAQILAERLPFP 157 (259)
Q Consensus 144 -~~~~~~f~~~~~fp 157 (259)
...++.+.+.++.|
T Consensus 94 ~~~~a~~~~~~lgIp 108 (168)
T PF09419_consen 94 DGERAEALEKALGIP 108 (168)
T ss_pred cHHHHHHHHHhhCCc
Confidence 45566777777777
No 255
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.61 E-value=58 Score=26.35 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=24.6
Q ss_pred EEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEE
Q 024977 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLI 137 (259)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv 137 (259)
|.||--+.||.|..-.+.|.++..++. .++++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 445668899999999999998888772 345443
No 256
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=29.60 E-value=2.1e+02 Score=20.35 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCcEEEEEeCCChHHH----HHHHhhCCCCCCCcccCCchHHHHHhCCccc
Q 024977 123 KESKARFDSAGVKLIAVGVGTPNKA----QILAERLPFPMDCLYADPDRKVYNLLGLYHG 178 (259)
Q Consensus 123 ~~~~~~~~~~gv~vv~Vs~~~~~~~----~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~ 178 (259)
++....++...+.+|.|..|-.+.. ..+++..+.|+ +..+...++.++.|....
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~--~~~~s~~eLG~a~G~~~~ 74 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPV--SKVDSMKKLGKACGIEVG 74 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCE--EEECCHHHHHHHHCCCcC
Confidence 3444556667788999988865543 33455677775 566667889999888654
No 257
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=28.76 E-value=1.7e+02 Score=28.02 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=49.9
Q ss_pred ccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 71 ~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
.-++.+--+.+.-.+|+.|++.+|++.. .+||+- ++ --+|.+-+...+.+..++.+.||-||-|..+
T Consensus 271 ~Ree~L~rL~v~l~~~~~v~l~~LRg~~--RvvIvA--G~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 271 TRDETLSRLPVRLSTNRIVELVQLRDIT--RPVILA--GT-KESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HhhhhhccceEeccCCCEEeHHHhcCcc--eEEEEE--CC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 3455555555555568899999999973 444432 33 3788888999999999999999999998765
No 258
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=28.43 E-value=1.1e+02 Score=24.95 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=22.4
Q ss_pred eEEEEe-CCeEEEEEecCCCCCCCCHHHHHHHhc
Q 024977 222 GMFVFK-GKQLLYARKDEGTGDHASLDDVFDICC 254 (259)
Q Consensus 222 g~fVid-~g~V~y~~~~~~~~d~~~~~~iL~a~~ 254 (259)
++.|+| +|+|.|.+-+ .-...++++++..+.
T Consensus 149 aivVlDk~G~VkfvkeG--aLt~aevQ~Vi~ll~ 180 (184)
T COG3054 149 AVVVLDKDGRVKFVKEG--ALTQAEVQQVIDLLQ 180 (184)
T ss_pred eEEEEcCCCcEEEEecC--CccHHHHHHHHHHHH
Confidence 677888 8999998754 445667777776654
No 259
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=28.28 E-value=57 Score=26.25 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCc
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPD 166 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~ 166 (259)
+-+|+.+-+-.-|.+.-.....+++.+++.... +++|...+.++-..|.+.++|. ++.|.+
T Consensus 81 ~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms~F~kagW~~~I~FD---~iID~~ 141 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICFMSMFEKAGWDDKIDFD---YIIDAD 141 (147)
T ss_dssp EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETTHHHHTTHHHHS--S---EEEEEE
T ss_pred CCEEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHHHHHHcCCccccCcc---EEEeee
Confidence 667777888888888888888888888875544 9999999999888999999999 777754
No 260
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=27.96 E-value=1.8e+02 Score=23.00 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=33.6
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE 152 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~ 152 (259)
++|++-|-..|-|.|...=..|.+..+.+.+- +.+..+-.+ .+..|.+
T Consensus 24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid---eV~~~~~ 71 (142)
T KOG3414|consen 24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID---EVPDFVK 71 (142)
T ss_pred eEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc---hhhhhhh
Confidence 78999999999999999888888887776432 223334433 4555655
No 261
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=27.82 E-value=1e+02 Score=27.83 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=22.8
Q ss_pred cccCeEEEEe-CCeEEEEEecC-CCC-CCCCHHHHHHHhc
Q 024977 218 LQQGGMFVFK-GKQLLYARKDE-GTG-DHASLDDVFDICC 254 (259)
Q Consensus 218 ~~~gg~fVid-~g~V~y~~~~~-~~~-d~~~~~~iL~a~~ 254 (259)
+-.=|+|+|| .|+++|+.... ..+ +-+-++++++-+.
T Consensus 102 ~g~d~vf~vd~~G~~vy~~~~d~~t~~~~~~~~~L~~~i~ 141 (295)
T COG3322 102 LGLDGVFVVDPSGKLVYSKLVDQETATELPLPESLLEDIR 141 (295)
T ss_pred cCccEEEEECCCCCEEEEeeeccccccccCCcHHHHHHHh
Confidence 3445899999 78888887642 222 2333566666554
No 262
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=27.46 E-value=19 Score=26.44 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=15.2
Q ss_pred CeEEEEeCCeEEEEEecCCC
Q 024977 221 GGMFVFKGKQLLYARKDEGT 240 (259)
Q Consensus 221 gg~fVid~g~V~y~~~~~~~ 240 (259)
+--|++|+|+++|..-+..+
T Consensus 25 ~hgflfddg~~vw~e~~d~~ 44 (111)
T PF02484_consen 25 RHGFLFDDGDIVWSEDDDET 44 (111)
T ss_pred ccceEecCCcEEEecCChHH
Confidence 45599999999998765443
No 263
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=26.82 E-value=1.1e+02 Score=27.28 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHH----HHHHHHHhhCCcEEEEEeCCChHHH
Q 024977 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASAL----KESKARFDSAGVKLIAVGVGTPNKA 147 (259)
Q Consensus 73 G~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L----~~~~~~~~~~gv~vv~Vs~~~~~~~ 147 (259)
=+..|-|++.|.+|+++-.++-.+. ++.+.++|+ |...+.++ +...+++ ..+++|+.|+.+...++
T Consensus 72 L~~VPVF~itn~~G~p~l~~~~~~~-~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 72 LAGVPVFTITNSQGEPVLVSGPDQG-GKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HTTSEEEEEE-TT--B-----TTS---SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHH
T ss_pred hcCceEEEEECCCCCEEEeccCCCC-CceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHH
Confidence 4568889999999999877766521 124555554 45544444 3333333 57899999998776543
No 264
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=26.58 E-value=84 Score=23.02 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=27.4
Q ss_pred CCCHhhHHHHHHHHHHHHHHhhCCcE--EEEEeCCChHHHHHHHh---hCCCCCCCcccCCc
Q 024977 110 FGCPCCWELASALKESKARFDSAGVK--LIAVGVGTPNKAQILAE---RLPFPMDCLYADPD 166 (259)
Q Consensus 110 ~~Cp~C~~~l~~L~~~~~~~~~~gv~--vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~~ 166 (259)
-.||+|++-.-.|.+ +|+. ++-|...... ..|.+ .-..| ++.|.+
T Consensus 20 g~cpf~~rvrl~L~e-------Kgi~ye~~~vd~~~~p--~~~~~~nP~g~vP---vL~~~~ 69 (91)
T cd03061 20 GNCPFCQRLFMVLWL-------KGVVFNVTTVDMKRKP--EDLKDLAPGTQPP---FLLYNG 69 (91)
T ss_pred CCChhHHHHHHHHHH-------CCCceEEEEeCCCCCC--HHHHHhCCCCCCC---EEEECC
Confidence 489999998777765 3554 5555544422 34666 23567 677644
No 265
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.39 E-value=1.2e+02 Score=25.13 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred ccCCCCCCcEEecCCCCeEecccccccCCCcEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh--HHHH
Q 024977 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP--NKAQ 148 (259)
Q Consensus 71 ~vG~~aPdf~l~d~~G~~v~lsdl~~~~~~~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~--~~~~ 148 (259)
.--+++|...-.+.+. .+++++... --||+|-|...-. ++. +..+++.++|+.+|+|+.... ....
T Consensus 58 ~g~E~l~~~k~l~~~~--~~~~~lt~~---DRVllfs~~~~~~----e~~---~~a~~L~~~gi~~v~Vs~~~~~~~~l~ 125 (172)
T PF10740_consen 58 YGAEPLPSAKRLSEDL--ENFDELTET---DRVLLFSPFSTDE----EAV---ALAKQLIEQGIPFVGVSPNKPDEEDLE 125 (172)
T ss_dssp CSTT--TTEEE--TT----------TT----EEEEEES-S--H----HHH---HHHHHHHHHT--EEEEE-SS---TTGG
T ss_pred cCCCCCchhhcCcccc--ccccccccc---ceEEEEeCCCCCH----HHH---HHHHHHHHCCCCEEEEEecCCCCCchh
Confidence 3445666655443222 223344433 2466665543332 333 334456678999999992221 1122
Q ss_pred HHHh---hCCCCCCCcccCCchHHHHHhCC
Q 024977 149 ILAE---RLPFPMDCLYADPDRKVYNLLGL 175 (259)
Q Consensus 149 ~f~~---~~~fp~~~ll~D~~~~~~~~~Gv 175 (259)
.++. .++.+.. |+-|++| ..+|.
T Consensus 126 ~~~~~~Idl~~~~~-LvP~EdG---~Rig~ 151 (172)
T PF10740_consen 126 DLADVHIDLKLPKP-LVPTEDG---DRIGF 151 (172)
T ss_dssp G-SSS-EE----S--SEE-TTS----EE--
T ss_pred hhhhheeecccCCC-cccCCCC---CEecc
Confidence 2222 2333333 7777775 34554
No 266
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=25.85 E-value=90 Score=21.09 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=18.9
Q ss_pred EEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q 024977 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (259)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~ 142 (259)
+|-..+||+|+.-...|.+ +|+..-.+..+
T Consensus 4 Ly~~~~~p~c~kv~~~L~~-------~gi~y~~~~~~ 33 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDY-------HGIPYEVVEVN 33 (77)
T ss_pred EEEcCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 4446789999987755544 56654444443
No 267
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=25.14 E-value=2.5e+02 Score=21.33 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCcEEEEEeCC-----ChHHHHHHHhhCCCC
Q 024977 121 ALKESKARFDSAGVKLIAVGVG-----TPNKAQILAERLPFP 157 (259)
Q Consensus 121 ~L~~~~~~~~~~gv~vv~Vs~~-----~~~~~~~f~~~~~fp 157 (259)
.+.++..++.+.|+.=++|..+ =++.+.+++++++||
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lP 101 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLP 101 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCC
Confidence 4555566777888888887665 356788888899999
No 268
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=25.01 E-value=1.5e+02 Score=22.40 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCC--------hHHHHHHHhhCCCC
Q 024977 120 SALKESKARFDSAGVKLIAVGVGT--------PNKAQILAERLPFP 157 (259)
Q Consensus 120 ~~L~~~~~~~~~~gv~vv~Vs~~~--------~~~~~~f~~~~~fp 157 (259)
+...+....+++.|+.++.++... .+.++++.+.++.+
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 556667778888999999999877 55566666655554
No 269
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=24.94 E-value=78 Score=27.06 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=28.6
Q ss_pred CcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCchHHHHHhCCcccc
Q 024977 133 GVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYHGV 179 (259)
Q Consensus 133 gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~~ 179 (259)
.+++|.+.-+-.+..+ .++=+ +|.|..|.+.+.||+..-+
T Consensus 146 ~~k~ILv~Gs~~~~~~----~l~~~---vYfdQ~G~Lt~rF~I~~VP 185 (209)
T PRK13738 146 ESKIILVQGSIPEMSK----ALDSR---IYFDQNGVLCQRFGIDQVP 185 (209)
T ss_pred CceEEEECCCHHHHHH----HhCCc---eEEcCcchHHHhcCCeeec
Confidence 5777777744433333 44556 8999999999999998743
No 270
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.30 E-value=55 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=16.6
Q ss_pred EcCCCCHhhHH--HHHHHHHHHHHH
Q 024977 107 LRHFGCPCCWE--LASALKESKARF 129 (259)
Q Consensus 107 ~r~~~Cp~C~~--~l~~L~~~~~~~ 129 (259)
+++.|||-|-. .+..+.+...++
T Consensus 6 ~~~~~CpGCg~~~i~~~~~~a~~~l 30 (280)
T PRK11869 6 YDIAWCPGCGNFGIRNALMKALSEL 30 (280)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHc
Confidence 57899999976 456666666554
No 271
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.94 E-value=5.4e+02 Score=23.93 Aligned_cols=99 Identities=24% Similarity=0.276 Sum_probs=55.1
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCCchHHHHHhCC-c
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDRKVYNLLGL-Y 176 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~~~~~~~~~Gv-~ 176 (259)
|+++--.-.+-...-...+.++.+ +.+.|+++|=|...+.+..+++.+ +.+.| |+.|-.-...-++.. .
T Consensus 27 Pi~VQSMt~t~T~Dv~atv~Qi~~----L~~aGceiVRvav~~~~~a~al~~I~~~~~iP---lvADIHFd~~lAl~a~~ 99 (360)
T PRK00366 27 PIVVQSMTNTDTADVEATVAQIKR----LARAGCEIVRVAVPDMEAAAALPEIKKQLPVP---LVADIHFDYRLALAAAE 99 (360)
T ss_pred cEEEEecCCCCchhHHHHHHHHHH----HHHcCCCEEEEccCCHHHHHhHHHHHHcCCCC---EEEecCCCHHHHHHHHH
Confidence 555554433333333333444333 567899999999988877666654 78999 899875433222211 1
Q ss_pred ccccccccCCchh-HHHHHHHHHHHHHhcCc
Q 024977 177 HGVGRTFFNPASA-KVFSRFEALRKAVQNYT 206 (259)
Q Consensus 177 ~~~~~~~~~p~~~-~v~~~~~~l~~~~~~~~ 206 (259)
.+...-.+||... ++...++.+.+..+..+
T Consensus 100 ~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ 130 (360)
T PRK00366 100 AGADALRINPGNIGKRDERVREVVEAAKDYG 130 (360)
T ss_pred hCCCEEEECCCCCCchHHHHHHHHHHHHHCC
Confidence 1222234677642 22345666666666554
No 272
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=23.78 E-value=35 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCc
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGV 134 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv 134 (259)
-..+-|| ++||..|..--|-..+.--++++.|.
T Consensus 45 iW~VdFY-APWC~HCKkLePiWdeVG~elkdig~ 77 (468)
T KOG4277|consen 45 IWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGL 77 (468)
T ss_pred eEEEEee-chhhhhcccccchhHHhCcchhhcCC
Confidence 4455555 99999999877766665555555554
No 273
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=23.63 E-value=2.9e+02 Score=19.96 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCcEEEEEeCCChH----HHHHHHhhCCCCCCCcccCCchHHHHHhCCccc
Q 024977 122 LKESKARFDSAGVKLIAVGVGTPN----KAQILAERLPFPMDCLYADPDRKVYNLLGLYHG 178 (259)
Q Consensus 122 L~~~~~~~~~~gv~vv~Vs~~~~~----~~~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~ 178 (259)
.++....++...+.+|.|..|-.. .+...+++.+.|+ ++.|.-.++.++.|+..+
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~--v~V~s~~~LGkAcgi~V~ 76 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV--SFFKSKHALGKHVGINVN 76 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE--EEECCHHHHHHHhCCCcC
Confidence 445555666666778888776432 2444566788886 788989999999998754
No 274
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=23.63 E-value=1.1e+02 Score=28.14 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=34.4
Q ss_pred CCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCCCCCcccCCc
Q 024977 111 GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPD 166 (259)
Q Consensus 111 ~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp~~~ll~D~~ 166 (259)
+|.+...+++.+++.. .++++++|..-+.++.+++.++++++ .+.|.+
T Consensus 10 G~~~G~~h~~al~~~~-----~~~eLvaV~d~~~erA~~~A~~~gi~---~y~~~e 57 (343)
T TIGR01761 10 GTRFGQFYLAAFAAAP-----ERFELAGILAQGSERSRALAHRLGVP---LYCEVE 57 (343)
T ss_pred eHHHHHHHHHHHHhCC-----CCcEEEEEEcCCHHHHHHHHHHhCCC---ccCCHH
Confidence 3455666666665431 27999999988889999999988877 555544
No 275
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=23.37 E-value=1.4e+02 Score=17.60 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=16.0
Q ss_pred cCeEEEEe--CCeEEEEEecCCC
Q 024977 220 QGGMFVFK--GKQLLYARKDEGT 240 (259)
Q Consensus 220 ~gg~fVid--~g~V~y~~~~~~~ 240 (259)
-|-.|-+| .|+++|.|.....
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSSG
T ss_pred CCEEEEEECCCCCEEEeeeCCCC
Confidence 35677888 6999999986654
No 276
>TIGR00035 asp_race aspartate racemase.
Probab=23.35 E-value=1.7e+02 Score=24.95 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhCCcEEEEEeCCChHH-HHHHHhhCCCCCCCccc--CCchHHHHHhCC
Q 024977 118 LASALKESKARFDSAGVKLIAVGVGTPNK-AQILAERLPFPMDCLYA--DPDRKVYNLLGL 175 (259)
Q Consensus 118 ~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~-~~~f~~~~~fp~~~ll~--D~~~~~~~~~Gv 175 (259)
-.+.+.+....+++.|+++++|.+++... ..+..+..+.| ++. |+..+..+..|.
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iP---ii~i~~~~~~~~~~~~~ 117 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIP---LISMIEETAEAVKEDGV 117 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCC---EechHHHHHHHHHHcCC
Confidence 45566677777888999999999998655 34444467777 443 444333343443
No 277
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=23.03 E-value=1.9e+02 Score=20.39 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=13.3
Q ss_pred EEEcCCCCHhhHHHHHHHHH
Q 024977 105 ALLRHFGCPCCWELASALKE 124 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~ 124 (259)
.+|....||+|+.-.-.|..
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~ 39 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAA 39 (89)
T ss_pred EEEeCCCCchHHHHHHHHHH
Confidence 33446789999976555544
No 278
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.81 E-value=2.9e+02 Score=19.74 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=34.5
Q ss_pred HHHHhhCCcEEEEEeCCChHHH----HHHHhhCCCCCCCcccCCchHHHHHhCCccc
Q 024977 126 KARFDSAGVKLIAVGVGTPNKA----QILAERLPFPMDCLYADPDRKVYNLLGLYHG 178 (259)
Q Consensus 126 ~~~~~~~gv~vv~Vs~~~~~~~----~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~ 178 (259)
...++...+.+|.|..|-.+.. ..+++..+.|+ ++.....++.++.|...+
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv--~~~~t~~eLG~A~G~~v~ 71 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI--VYIDTMKELGVMCGIDVG 71 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE--EEeCCHHHHHHHHCCccC
Confidence 3445567788999988865443 33345677784 455667889999998754
No 279
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=22.76 E-value=2.1e+02 Score=23.17 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCC
Q 024977 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (259)
Q Consensus 120 ~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp 157 (259)
+...+....+++.|..++.||......++.+.+.+++.
T Consensus 90 ~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 90 PEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 34455556677889999999988877788888877765
No 280
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.18 E-value=74 Score=27.49 Aligned_cols=42 Identities=5% Similarity=0.011 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
+.++..||..||..|.+.-.-+....+.+ .+++++-+..+..
T Consensus 18 ~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~ 59 (227)
T KOG0911|consen 18 KLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEF 59 (227)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhh
Confidence 56777778999999999887777777766 5666666655443
No 281
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.18 E-value=2.4e+02 Score=20.87 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh
Q 024977 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE 152 (259)
Q Consensus 102 vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~ 152 (259)
.+++++-..+.. +.+.+..+..++.|+.+|+|..+....+.++.+
T Consensus 62 ~~~i~iS~~g~~------~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d 106 (139)
T cd05013 62 DVVIAISFSGET------KETVEAAEIAKERGAKVIAITDSANSPLAKLAD 106 (139)
T ss_pred CEEEEEeCCCCC------HHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcC
Confidence 455555555554 344445556677899999998876655555554
No 282
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.04 E-value=4.1e+02 Score=21.92 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=16.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHH
Q 024977 101 VAVVALLRHFGCPCCWELASAL 122 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L 122 (259)
+-+++.|-...|++|.+.=..+
T Consensus 43 Kylllmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 43 KYLLLMFESNGCSYCERFKKDL 64 (182)
T ss_pred cEEEEEEcCCCChHHHHHHHhh
Confidence 4566666789999999865444
No 283
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=21.89 E-value=1.6e+02 Score=23.10 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCC
Q 024977 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (259)
Q Consensus 120 ~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp 157 (259)
+.+.+....+++.|..++.||.+....++.+.+.+++.
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 45666777788899999999988877788888766665
No 284
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=21.84 E-value=1.2e+02 Score=23.31 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCC
Q 024977 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERLP 155 (259)
Q Consensus 121 ~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~ 155 (259)
.+.+...++++.|+.++.+|..+...+....+.++
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERVLERLG 115 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTT
T ss_pred hhhhhhhhcccccceeEEeecCCcccccccccccc
Confidence 34556666777899999999888776666666443
No 285
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=21.62 E-value=1.3e+02 Score=24.28 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHhhCCCC
Q 024977 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (259)
Q Consensus 120 ~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~~~~fp 157 (259)
+...+...++++.|+++..++-++........+.++++
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 34455555667788888888877777777777776664
No 286
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.29 E-value=2.3e+02 Score=24.55 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCChHHHHHH-HhhCCCCCCCcccCCchHHHHHhCCcc
Q 024977 120 SALKESKARFDSAGVKLIAVGVGTPNKAQIL-AERLPFPMDCLYADPDRKVYNLLGLYH 177 (259)
Q Consensus 120 ~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f-~~~~~fp~~~ll~D~~~~~~~~~Gv~~ 177 (259)
+.|.+....+++.|++++++..++......= .+..+.|.- =+.|.+..-.+.-|+++
T Consensus 62 ~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPll-hIidaTa~~ik~~g~kk 119 (230)
T COG1794 62 EILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLL-HIIDATAKAIKAAGAKK 119 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCee-hHHHHHHHHHHhcCCce
Confidence 4556666778899999999999997654333 336777721 23477777777777765
No 287
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.89 E-value=2.6e+02 Score=21.23 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=26.0
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hHHHHHHH
Q 024977 103 VVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--PNKAQILA 151 (259)
Q Consensus 103 vL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~--~~~~~~f~ 151 (259)
+++++ ..+.+.... ...+...++++.|+.++.|+.++ .+.++.+.
T Consensus 106 ~iili-TDG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la 152 (161)
T cd01450 106 VIIVL-TDGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGPADEEELREIA 152 (161)
T ss_pred EEEEE-CCCCCCCCc---chHHHHHHHHHCCCEEEEEeccccCHHHHHHHh
Confidence 33333 556555533 34455556677799998888774 33344443
No 288
>PRK06683 hypothetical protein; Provisional
Probab=20.85 E-value=3.2e+02 Score=19.44 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHhhCCcEEEEEeCCChHHH----HHHHhhCCCCCCCcccCCchHHHHHhCCccc
Q 024977 126 KARFDSAGVKLIAVGVGTPNKA----QILAERLPFPMDCLYADPDRKVYNLLGLYHG 178 (259)
Q Consensus 126 ~~~~~~~gv~vv~Vs~~~~~~~----~~f~~~~~fp~~~ll~D~~~~~~~~~Gv~~~ 178 (259)
...++...+.+|.|..|-.+.. ..+++..+.|+ +..+...++.++.|+..+
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv--~~~~t~~eLG~A~G~~~~ 74 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPI--TKVESVRKLGKVAGIQVG 74 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCE--EEECCHHHHHHHhCCccc
Confidence 3445566788999988865542 33455677884 456667889999998764
No 289
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=20.81 E-value=1.5e+02 Score=21.95 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=25.4
Q ss_pred cccCeEEEEe-CCeEEEEEecCC-----CCCCCCHHHHHHHhcc
Q 024977 218 LQQGGMFVFK-GKQLLYARKDEG-----TGDHASLDDVFDICCK 255 (259)
Q Consensus 218 ~~~gg~fVid-~g~V~y~~~~~~-----~~d~~~~~~iL~a~~~ 255 (259)
.+.|+ .|++ +|+|+..-++.. ...|+++..|..+.++
T Consensus 17 ~~vga-viv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~ 59 (109)
T cd01285 17 VPFGA-VIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARR 59 (109)
T ss_pred CcEEE-EEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHH
Confidence 44444 5556 587766555554 6899999999888664
No 290
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=20.73 E-value=4.3e+02 Score=20.91 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=32.0
Q ss_pred cEEEEEEcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q 024977 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (259)
Q Consensus 101 ~vvL~f~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~ 144 (259)
++|++-|.+.|-|.|.+.=.-|.+..+..+. =+.+..|..+..
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~V 63 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEV 63 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTT
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccc
Confidence 7999999999999999877777888776643 245666776654
No 291
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=20.73 E-value=2.6e+02 Score=18.36 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=12.1
Q ss_pred EcCCCCHhhHHHHHHHHH
Q 024977 107 LRHFGCPCCWELASALKE 124 (259)
Q Consensus 107 ~r~~~Cp~C~~~l~~L~~ 124 (259)
|-..+||+|+.-.-.|..
T Consensus 4 y~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 4 YIYEHCPFCVKARMIAGL 21 (71)
T ss_pred EecCCCcHhHHHHHHHHH
Confidence 346789999975555443
No 292
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=20.66 E-value=86 Score=20.62 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=14.8
Q ss_pred EEEcCCCCHhhHHHHHHHHH
Q 024977 105 ALLRHFGCPCCWELASALKE 124 (259)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~ 124 (259)
.+|...+||+|+.-.-.|.+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAE 21 (74)
T ss_pred EEEeCCCCcchHHHHHHHHH
Confidence 35667899999987766655
No 293
>PF09579 Spore_YtfJ: Sporulation protein YtfJ (Spore_YtfJ); InterPro: IPR014229 Proteins in this entry, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF [].
Probab=20.54 E-value=2e+02 Score=20.62 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEEeCCeEEEEEecCCCCCCCCHHHHHHHh
Q 024977 222 GMFVFKGKQLLYARKDEGTGDHASLDDVFDIC 253 (259)
Q Consensus 222 g~fVid~g~V~y~~~~~~~~d~~~~~~iL~a~ 253 (259)
|.+||.++.|.+....... .++.|++.+
T Consensus 50 a~lVI~~~~v~~~~~~~~~----~~~kli~~v 77 (83)
T PF09579_consen 50 AFLVIKGDGVRFLPLKNNN----PLDKLIDMV 77 (83)
T ss_pred EEEEEeCCEEEEEECCCCc----hHHHHHHhc
Confidence 4455578899998885543 888888765
No 294
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=20.35 E-value=1.5e+02 Score=20.05 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=27.4
Q ss_pred EcCCCCHhhHHHHHHHHHHHHHHhhCCcEEEEEeCCChHHHHHHHh---hCCCCCCCcccCC
Q 024977 107 LRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADP 165 (259)
Q Consensus 107 ~r~~~Cp~C~~~l~~L~~~~~~~~~~gv~vv~Vs~~~~~~~~~f~~---~~~fp~~~ll~D~ 165 (259)
|...+||+|+.-.-.|+. +....+++-|..... -..|.+ .-.+| ++.+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~--~~~~~~~~p~~~vP---vL~~~ 53 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEK--RPEFLKLNPKGKVP---VLVDD 53 (75)
T ss_dssp EEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTST--SHHHHHHSTTSBSS---EEEET
T ss_pred CCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccc--hhHHHhhcccccce---EEEEC
Confidence 456899999986655543 222344555555443 234444 45677 55543
Done!