Query 024979
Match_columns 259
No_of_seqs 211 out of 501
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02097 yccV hemimethylated 99.8 1.2E-21 2.6E-26 157.3 4.2 52 206-258 2-53 (101)
2 COG3880 Modulator of heat shoc 99.8 1.3E-20 2.8E-25 163.3 5.4 94 94-191 73-171 (176)
3 PF08755 YccV-like: Hemimethyl 99.8 4.1E-21 8.9E-26 152.3 1.7 52 206-258 2-53 (100)
4 PRK14129 heat shock protein Hs 99.7 3.2E-17 6.9E-22 132.5 4.3 51 206-258 4-54 (105)
5 COG3785 Uncharacterized conser 99.5 5E-15 1.1E-19 120.5 1.8 52 206-258 13-64 (116)
6 PF02151 UVR: UvrB/uvrC motif; 98.4 4.4E-07 9.5E-12 60.3 4.3 35 156-190 2-36 (36)
7 COG0556 UvrB Helicase subunit 96.6 0.0037 8E-08 63.8 6.3 44 150-193 618-661 (663)
8 PRK00558 uvrC excinuclease ABC 96.0 0.021 4.5E-07 58.3 7.7 36 157-192 203-238 (598)
9 PRK05298 excinuclease ABC subu 95.8 0.014 3.1E-07 59.6 5.4 40 153-192 610-649 (652)
10 TIGR00631 uvrb excinuclease AB 95.7 0.011 2.3E-07 60.9 4.1 37 152-188 619-655 (655)
11 PRK12306 uvrC excinuclease ABC 95.4 0.024 5.2E-07 57.2 5.4 35 157-191 193-227 (519)
12 TIGR00194 uvrC excinuclease AB 95.3 0.03 6.5E-07 57.1 5.6 74 157-230 195-271 (574)
13 PRK14671 uvrC excinuclease ABC 95.2 0.027 5.9E-07 57.8 5.1 36 157-192 216-251 (621)
14 PRK14666 uvrC excinuclease ABC 95.1 0.031 6.7E-07 58.3 5.3 36 157-192 202-237 (694)
15 PRK07883 hypothetical protein; 95.1 0.023 4.9E-07 57.4 4.1 36 157-192 407-442 (557)
16 PRK14669 uvrC excinuclease ABC 95.0 0.039 8.5E-07 56.8 5.5 36 157-192 204-239 (624)
17 PRK14672 uvrC excinuclease ABC 94.7 0.049 1.1E-06 56.8 5.3 35 157-191 206-240 (691)
18 PRK14668 uvrC excinuclease ABC 94.2 0.052 1.1E-06 55.4 4.2 35 157-191 200-234 (577)
19 PRK14667 uvrC excinuclease ABC 94.0 0.056 1.2E-06 55.1 4.1 36 157-192 200-235 (567)
20 PRK14670 uvrC excinuclease ABC 93.9 0.061 1.3E-06 55.0 4.1 36 157-192 178-213 (574)
21 COG0322 UvrC Nuclease subunit 93.4 0.11 2.4E-06 53.2 4.9 74 157-230 203-279 (581)
22 PF04420 CHD5: CHD5-like prote 89.4 0.47 1E-05 40.8 3.9 91 148-239 39-132 (161)
23 PRK11020 hypothetical protein; 77.4 8.2 0.00018 32.5 6.1 46 148-193 4-49 (118)
24 KOG4825 Component of synaptic 76.9 5.1 0.00011 41.1 5.6 40 155-194 206-245 (666)
25 PRK00420 hypothetical protein; 70.8 7 0.00015 32.5 4.2 25 96-120 24-52 (112)
26 PF05605 zf-Di19: Drought indu 65.9 4.9 0.00011 28.3 2.0 24 109-133 3-26 (54)
27 KOG0412 Golgi transport comple 62.8 19 0.00042 38.5 6.4 59 121-189 100-161 (773)
28 PF10186 Atg14: UV radiation r 60.8 45 0.00097 29.7 7.7 19 98-117 2-20 (302)
29 PRK00409 recombination and DNA 58.6 89 0.0019 33.4 10.5 23 207-229 636-658 (782)
30 PF13801 Metal_resist: Heavy-m 58.4 71 0.0015 24.0 7.4 43 150-192 60-104 (125)
31 PF04880 NUDE_C: NUDE protein, 54.9 8.1 0.00018 34.1 1.9 17 175-191 31-47 (166)
32 KOG4408 Putative Mg2+ and Co2+ 53.5 8.9 0.00019 37.8 2.1 26 205-230 64-90 (386)
33 PF09926 DUF2158: Uncharacteri 52.7 14 0.00031 26.8 2.5 21 208-228 1-21 (53)
34 TIGR00714 hscB Fe-S protein as 49.4 43 0.00093 28.7 5.4 34 152-185 107-140 (157)
35 PF09969 DUF2203: Uncharacteri 47.8 1E+02 0.0022 25.6 7.2 20 116-135 3-22 (120)
36 PF00653 BIR: Inhibitor of Apo 47.4 8.7 0.00019 28.1 0.8 25 68-107 24-48 (70)
37 PRK03578 hscB co-chaperone Hsc 47.4 88 0.0019 27.4 7.1 30 151-180 123-153 (176)
38 PF13717 zinc_ribbon_4: zinc-r 46.9 6.9 0.00015 26.0 0.1 23 96-118 3-35 (36)
39 PRK01773 hscB co-chaperone Hsc 45.9 60 0.0013 28.5 5.9 40 152-191 121-170 (173)
40 COG2960 Uncharacterized protei 45.5 1.5E+02 0.0033 24.6 7.7 27 168-194 55-85 (103)
41 PRK05014 hscB co-chaperone Hsc 44.3 56 0.0012 28.4 5.4 39 152-190 120-168 (171)
42 PF15290 Syntaphilin: Golgi-lo 41.8 43 0.00092 32.4 4.6 42 152-193 85-135 (305)
43 PF13719 zinc_ribbon_5: zinc-r 41.1 9.6 0.00021 25.3 0.1 24 96-119 3-36 (37)
44 COG1610 Uncharacterized conser 40.9 1.5E+02 0.0033 26.0 7.4 66 122-189 24-89 (148)
45 TIGR01069 mutS2 MutS2 family p 40.8 3E+02 0.0066 29.5 11.1 21 209-229 626-646 (771)
46 PF02211 NHase_beta: Nitrile h 40.4 19 0.00041 33.0 2.0 51 202-258 129-192 (222)
47 PF08700 Vps51: Vps51/Vps67; 40.1 1.5E+02 0.0033 21.9 7.1 64 117-192 5-68 (87)
48 cd00022 BIR Baculoviral inhibi 39.5 16 0.00034 26.3 1.1 25 68-107 22-46 (69)
49 PRK11546 zraP zinc resistance 39.1 1.6E+02 0.0035 25.5 7.3 67 112-192 38-106 (143)
50 CHL00095 clpC Clp protease ATP 38.5 78 0.0017 33.7 6.4 41 153-193 414-454 (821)
51 PHA00743 helix-turn-helix prot 37.9 1.3E+02 0.0028 22.1 5.5 22 123-144 7-28 (51)
52 PF13462 Thioredoxin_4: Thiore 36.3 24 0.00052 28.1 1.8 22 107-131 20-41 (162)
53 PRK00294 hscB co-chaperone Hsc 36.3 1.4E+02 0.003 26.2 6.7 20 160-179 129-149 (173)
54 PF13234 rRNA_proc-arch: rRNA- 36.1 1E+02 0.0022 27.9 6.0 76 154-232 20-100 (268)
55 TIGR00606 rad50 rad50. This fa 35.8 1.1E+02 0.0024 34.2 7.3 26 110-135 679-704 (1311)
56 PF13805 Pil1: Eisosome compon 34.7 89 0.0019 29.7 5.5 67 108-192 116-182 (271)
57 PF04508 Pox_A_type_inc: Viral 34.4 38 0.00083 21.1 2.0 16 178-193 4-19 (23)
58 KOG1029 Endocytic adaptor prot 34.1 1.4E+02 0.0031 32.9 7.3 69 122-199 545-619 (1118)
59 KOG4253 Tryptophan-rich basic 32.2 1.3E+02 0.0028 27.0 5.8 43 154-196 49-91 (175)
60 PF09862 DUF2089: Protein of u 31.7 18 0.00038 30.2 0.3 22 98-119 1-23 (113)
61 PF07743 HSCB_C: HSCB C-termin 31.5 2.1E+02 0.0046 21.0 7.1 37 152-188 34-70 (78)
62 PRK13729 conjugal transfer pil 31.5 1E+02 0.0022 31.6 5.7 41 153-193 80-122 (475)
63 KOG1853 LIS1-interacting prote 31.1 1.6E+02 0.0035 28.5 6.5 39 154-192 131-181 (333)
64 cd03023 DsbA_Com1_like DsbA fa 30.9 35 0.00076 26.6 1.9 20 108-130 14-33 (154)
65 KOG1760 Molecular chaperone Pr 30.6 63 0.0014 27.8 3.4 13 204-216 64-76 (131)
66 PRK06342 transcription elongat 29.8 1.4E+02 0.0031 25.9 5.6 65 149-215 34-102 (160)
67 PF02807 ATP-gua_PtransN: ATP: 29.4 41 0.00088 26.1 1.9 25 108-134 51-75 (76)
68 PF09237 GAGA: GAGA factor; I 28.5 30 0.00066 25.6 1.0 21 110-130 26-46 (54)
69 PF14282 FlxA: FlxA-like prote 27.8 1.7E+02 0.0037 23.5 5.4 43 150-192 20-68 (106)
70 PF04380 BMFP: Membrane fusoge 27.8 2.8E+02 0.0061 21.2 6.9 27 168-194 46-76 (79)
71 cd02972 DsbA_family DsbA famil 27.7 38 0.00081 23.8 1.4 18 108-128 6-23 (98)
72 PRK12750 cpxP periplasmic repr 27.5 3.1E+02 0.0067 24.0 7.3 53 123-184 60-112 (170)
73 PRK10132 hypothetical protein; 26.9 1.7E+02 0.0038 24.0 5.3 14 174-187 40-53 (108)
74 PF00816 Histone_HNS: H-NS his 26.8 64 0.0014 24.8 2.7 31 157-187 2-32 (93)
75 PF05852 DUF848: Gammaherpesvi 26.6 2.7E+02 0.0058 24.3 6.6 41 154-194 66-108 (146)
76 smart00238 BIR Baculoviral inh 25.7 38 0.00081 24.4 1.1 25 68-107 24-48 (71)
77 PRK00226 greA transcription el 25.4 2.6E+02 0.0057 23.5 6.4 41 175-216 54-94 (157)
78 PF04216 FdhE: Protein involve 24.5 34 0.00074 31.6 0.9 26 94-119 196-222 (290)
79 PF14357 DUF4404: Domain of un 23.9 3.5E+02 0.0076 21.0 6.3 54 124-186 2-57 (85)
80 PHA00616 hypothetical protein 23.6 65 0.0014 22.8 1.9 26 109-134 2-27 (44)
81 cd06080 MUM1_like Mutated mela 23.6 81 0.0017 24.6 2.7 23 208-230 1-26 (80)
82 PF00855 PWWP: PWWP domain; I 23.5 78 0.0017 23.2 2.5 22 208-229 1-25 (86)
83 COG5296 Transcription factor i 23.3 95 0.0021 31.6 3.7 34 158-191 367-400 (521)
84 PF12711 Kinesin-relat_1: Kine 22.8 72 0.0016 25.5 2.3 51 139-189 12-65 (86)
85 PF06476 DUF1090: Protein of u 22.8 2.5E+02 0.0054 23.2 5.6 66 122-192 46-113 (115)
86 KOG0739 AAA+-type ATPase [Post 22.4 61 0.0013 32.3 2.2 110 110-230 57-175 (439)
87 TIGR02457 TreS_Cterm trehalose 22.0 8.9E+02 0.019 25.0 10.4 108 120-232 286-407 (528)
88 PRK13276 cell wall biosynthesi 21.9 2.9E+02 0.0063 25.4 6.3 45 150-194 114-170 (224)
89 PF05529 Bap31: B-cell recepto 21.8 3.6E+02 0.0077 23.2 6.6 15 153-167 158-172 (192)
90 PF07851 TMPIT: TMPIT-like pro 21.8 4.9E+02 0.011 25.5 8.1 40 153-192 43-85 (330)
91 PHA02562 46 endonuclease subun 21.8 2.3E+02 0.005 27.8 6.1 14 95-108 284-297 (562)
92 COG1327 Predicted transcriptio 21.7 1.2E+02 0.0027 26.8 3.7 6 98-103 3-8 (156)
93 PF02559 CarD_CdnL_TRCF: CarD- 21.6 44 0.00096 25.7 0.9 25 207-232 1-25 (98)
94 PF14335 DUF4391: Domain of un 21.6 4.3E+02 0.0093 23.5 7.3 43 149-191 175-221 (221)
95 PRK05231 homoserine kinase; Pr 21.6 5.8E+02 0.013 22.9 8.2 33 207-241 193-225 (319)
96 COG2139 RPL21A Ribosomal prote 21.4 60 0.0013 26.7 1.6 26 207-232 32-70 (98)
97 COG5151 SSL1 RNA polymerase II 21.1 38 0.00082 33.4 0.5 23 98-120 365-400 (421)
98 PF06936 Selenoprotein_S: Sele 20.4 3.5E+02 0.0076 24.4 6.4 19 108-129 41-59 (190)
99 PRK00888 ftsB cell division pr 20.2 4.1E+02 0.0088 21.4 6.2 45 150-199 28-72 (105)
100 KOG0457 Histone acetyltransfer 20.2 37 0.00081 34.3 0.2 22 93-114 12-35 (438)
No 1
>TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
Probab=99.84 E-value=1.2e-21 Score=157.27 Aligned_cols=52 Identities=42% Similarity=0.831 Sum_probs=49.5
Q ss_pred cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
++|+|||||+||+|||+|||+||||+|.++++|+++|+++.++. ++||||||
T Consensus 2 ~kf~IGqvvrHr~~~yrGVI~gwDp~~~~~eeW~~~~~~~~~p~-~~qPfYhv 53 (101)
T TIGR02097 2 AKFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEIRPL-RDQPFYHV 53 (101)
T ss_pred ceecCCCEEEecccCCCEEEEeEChhccCChHHHHhhhcccCcc-cCCCceEE
Confidence 68999999999999999999999999999999999999987655 99999997
No 2
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-20 Score=163.26 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=84.2
Q ss_pred Cceeeccccccccc-----cccccccHHhhHhHHHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 024979 94 EDILFFFFQLDLAT-----RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKA 168 (259)
Q Consensus 94 ~~i~c~~cq~dl~~-----RlgCp~cYe~F~~a~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~A 168 (259)
+.+.|+.|++++.. |+||+.||.+|.+ .|.|.++++|++- ..|+||+|. +....+..+.+|..|++.|+++
T Consensus 73 e~l~C~~C~~Tfk~f~~~g~fGCaeCY~tf~~--~i~pi~~rvq~g~-~~H~GK~P~-~~~~~i~~~~~I~~L~e~Lq~~ 148 (176)
T COG3880 73 ELLGCHNCGMTFKEFIQSGLFGCAECYKTFES--QISPIITRVQGGY-VEHVGKVPK-RIGRKINPKRKIIALKEALQDL 148 (176)
T ss_pred HHhcCccccccHHHHHHhcccchHHHHHHHHH--HhhHHHHHhhCCc-eeecCcCcc-cccccccHHHHHHHHHHHHHHH
Confidence 36899999999865 9999999999997 9999999999993 278999994 3555567889999999999999
Q ss_pred hchhhHHHHHHhhhHHHHHHHhh
Q 024979 169 IDSENYALAADLRDQICKLEAES 191 (259)
Q Consensus 169 Ie~E~YE~AA~lRDeIr~Le~~~ 191 (259)
|+.||||+||.|||+|+.|+++.
T Consensus 149 i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 149 IEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999763
No 3
>PF08755 YccV-like: Hemimethylated DNA-binding protein YccV like; InterPro: IPR011722 This entry describes the small protein from Escherichia coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein []. The model entry describes a domain in longer eukaryotic proteins.; PDB: 1VBV_A.
Probab=99.81 E-value=4.1e-21 Score=152.33 Aligned_cols=52 Identities=46% Similarity=0.944 Sum_probs=22.6
Q ss_pred cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
++|+|||||+||+|||+|||+|||+.|.++++|+.+|+++.++. ++||||+|
T Consensus 2 ~~f~vGqvv~Hr~~~y~GVIvgwD~~~~~~~~W~~~~~~~~~~~-~~qPfY~v 53 (100)
T PF08755_consen 2 VKFRVGQVVRHRRYGYRGVIVGWDPECQAPEEWIEQMGVDNLPR-RNQPFYHV 53 (100)
T ss_dssp -SS-TT-EEEETTT--EEEEEEEE-------------------------EEEE
T ss_pred cccccCCEEEEeeeCccEEEECcccccCCCchHHHhcccccccc-CCCCcEEE
Confidence 68999999999999999999999999999999999999988766 99999997
No 4
>PRK14129 heat shock protein HspQ; Provisional
Probab=99.67 E-value=3.2e-17 Score=132.51 Aligned_cols=51 Identities=27% Similarity=0.522 Sum_probs=47.7
Q ss_pred cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
.+|.|||+|+||+|||||||++.||+|+.+++|++.+..+ .+.++||||||
T Consensus 4 akF~IGQ~VrHrl~~yrGVV~DVDP~fs~~e~w~~~ia~~--~p~kdqPwYHv 54 (105)
T PRK14129 4 SKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVN--DELRAAPWYHV 54 (105)
T ss_pred ccccCCcEEEEeecCCCeEEEeeCCCcCCCchhHHhhccC--CCccCCCceEE
Confidence 4899999999999999999999999999999999999655 58899999997
No 5
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=5e-15 Score=120.50 Aligned_cols=52 Identities=31% Similarity=0.691 Sum_probs=48.7
Q ss_pred cccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 206 v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
.+|.|||+|||++|+|+|||++.||++..+++|...+.++ .++.++||||||
T Consensus 13 aKF~IGQvVRHrlfpfrGVV~DvDPeyanteew~~~ip~~-~rp~rdqPfYHl 64 (116)
T COG3785 13 AKFGIGQVVRHRLFPFRGVVFDVDPEYANTEEWPDEIPVN-IRPLRDQPFYHL 64 (116)
T ss_pred hhcchhhhhhhhhcccceEEEecCcccccCccChhhcccc-ccccccCCceee
Confidence 5899999999999999999999999999999999999554 589999999997
No 6
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.40 E-value=4.4e-07 Score=60.33 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHh
Q 024979 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (259)
Q Consensus 156 ~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~ 190 (259)
..|..|+.+|..|+++++||+||.|||+|..|+.+
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 35788999999999999999999999999999864
No 7
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.0037 Score=63.81 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhh
Q 024979 150 EAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (259)
Q Consensus 150 ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~A 193 (259)
...+.+..|..|+++|++|-++-+||+||+|||+|.+|+++..+
T Consensus 618 ~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~~ 661 (663)
T COG0556 618 SKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELLG 661 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Confidence 45567888999999999999999999999999999999987653
No 8
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=96.00 E-value=0.021 Score=58.27 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+.+|++|.++.+||+||++||+|..|+.-.+
T Consensus 203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~~ 238 (598)
T PRK00558 203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQE 238 (598)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999997665
No 9
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.77 E-value=0.014 Score=59.65 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
..+..+..|+.+|++|.++.+||+||++||+|+.|+..+.
T Consensus 610 ~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~ 649 (652)
T PRK05298 610 ELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELL 649 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677899999999999999999999999999997654
No 10
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.68 E-value=0.011 Score=60.87 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHH
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLE 188 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le 188 (259)
.++...|..|+++|++|.++.+||+||++||+|+.|+
T Consensus 619 ~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 619 KELKKLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3456678889999999999999999999999999874
No 11
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=95.42 E-value=0.024 Score=57.17 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~ 191 (259)
-+..|+++|+.|-++.+||+||++||+|+.|+.=.
T Consensus 193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~~~ 227 (519)
T PRK12306 193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIENLQ 227 (519)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999998644
No 12
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=95.27 E-value=0.03 Score=57.05 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhHhhhhhccccc---ccccCcEEEeeccCccEEEEcccc
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF---AFRLGQKVNHKIFGYRAVICGMDP 230 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v---~FrVGqVvrHr~ygYrGVIvgWDp 230 (259)
-+.+|+.+|++|-++.+||+||++||+|+.|+.-.+.-........+..+ ....|..+.+-.+=-.|.|+|.+.
T Consensus 195 ~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~~Q~v~~~~~~d~Dvi~~~~~~~~~~v~v~~vR~G~l~~~~~ 271 (574)
T TIGR00194 195 VIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAAIQVFFIRQGKLIGRDQ 271 (574)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCeeecCCCCCceEEEEEEcCCcEEEEEEEEECCEEeccee
Confidence 35679999999999999999999999999998655421111111112222 333344433333323377777763
No 13
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=95.19 E-value=0.027 Score=57.81 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+.+|+.|-++.+||+||++||+|+.|+.-.+
T Consensus 216 l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~~~~ 251 (621)
T PRK14671 216 LIRSLTEEMQRAAAELKFEEAAELKDQIESLKRYAE 251 (621)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999986443
No 14
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=95.12 E-value=0.031 Score=58.32 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+.+|++|.++.+||+||++||+|+.|+.-.+
T Consensus 202 l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~~~ 237 (694)
T PRK14666 202 LVDALRTEMEAASEALEFERAAVLRDQIRAVERTVE 237 (694)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999987554
No 15
>PRK07883 hypothetical protein; Validated
Probab=95.07 E-value=0.023 Score=57.40 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+++|+.|.++.+||+||++||+|+.|+.-.+
T Consensus 407 ~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~ 442 (557)
T PRK07883 407 VLAALRARIDRLAAAERFEEAARLRDRLAALLRALA 442 (557)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999986544
No 16
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=94.97 E-value=0.039 Score=56.80 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+++|+.|.++.+||+||++||+|+.|+.-.+
T Consensus 204 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~~ 239 (624)
T PRK14669 204 LARSLRARMEAAALEMQFELAAKYRDLITTVEELEE 239 (624)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999987554
No 17
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=94.66 E-value=0.049 Score=56.82 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~ 191 (259)
-+..|+++|++|-++.+||+||++||+|+.|+.=.
T Consensus 206 ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~~~ 240 (691)
T PRK14672 206 TVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCIT 240 (691)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999998544
No 18
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=94.18 E-value=0.052 Score=55.37 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~ 191 (259)
-+..|+.+|++|-++.+||+||++||+|+.|+.=.
T Consensus 200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~~~ 234 (577)
T PRK14668 200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEAFH 234 (577)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999998644
No 19
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=94.02 E-value=0.056 Score=55.11 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+++|+.|-++.+||+||++||+|+.|+.-.+
T Consensus 200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~~ 235 (567)
T PRK14667 200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALENLIK 235 (567)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999987544
No 20
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=93.89 E-value=0.061 Score=54.96 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+.+|+.|-++.+||+||++||+|+.|+.=.+
T Consensus 178 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~~~ 213 (574)
T PRK14670 178 LLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEISQ 213 (574)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999987554
No 21
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=93.36 E-value=0.11 Score=53.22 Aligned_cols=74 Identities=23% Similarity=0.206 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh--hhhHhh-hhhcccccccccCcEEEeeccCccEEEEcccc
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL--AASATA-LAFENARFAFRLGQKVNHKIFGYRAVICGMDP 230 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~--AaSa~a-l~~~n~~v~FrVGqVvrHr~ygYrGVIvgWDp 230 (259)
-+..|++++++|-+..+||.||++||+|..|+.=.+ +.+... ...+--.+++.-|....+..+-..|-++|=+.
T Consensus 203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~~~q~v~~~~~~~~Dv~a~~~~~~~~~v~vf~~R~Gkllg~~~ 279 (581)
T COG0322 203 VLQELEEKMEEASENLDFERAARLRDQIKALEKLQEKQAVSLFKLQDLDVIAGAVDGGEACVQVFFVRGGKLLGRRA 279 (581)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccccccCCccchhhheeeecCCeEEEEEEEeecchhcCCcc
Confidence 356899999999999999999999999999986443 222211 12222223455555555555544466665443
No 22
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=89.38 E-value=0.47 Score=40.76 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhHhhhhhccccc--ccccCcE-EEeeccCccEE
Q 024979 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF--AFRLGQK-VNHKIFGYRAV 224 (259)
Q Consensus 148 ~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v--~FrVGqV-vrHr~ygYrGV 224 (259)
..+-..++.|+.+++++|...=..|||.+.|++|-++.+++++++..... +......+ .+..+-. +.=-.+-+-.+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS-LSSEKSSFDKSLSKVLWVLTTLPFFVLRF 117 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHH--------------
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 34455688899999999999889999999999999999999999854432 22222222 1111111 11111123344
Q ss_pred EEcccccccCChhHH
Q 024979 225 ICGMDPVCCESSSWM 239 (259)
Q Consensus 225 IvgWDp~c~a~eeW~ 239 (259)
+.+=.|++..|+.|.
T Consensus 118 ~~rk~pV~~lp~~~~ 132 (161)
T PF04420_consen 118 WYRKTPVFYLPKGWF 132 (161)
T ss_dssp ---------------
T ss_pred eecCceEEEECchhh
Confidence 456678888888887
No 23
>PRK11020 hypothetical protein; Provisional
Probab=77.40 E-value=8.2 Score=32.53 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhh
Q 024979 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (259)
Q Consensus 148 ~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~A 193 (259)
+.|-+.+...|..++.+|..|+...|-|.-+++.++|..|+.++..
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~ 49 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIAR 49 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999999999887764
No 24
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=76.86 E-value=5.1 Score=41.05 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (259)
Q Consensus 155 ~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~Aa 194 (259)
..++++|..+.-.||++|||..|-.+.|+|.+|..++.|.
T Consensus 206 geeleelEndKgcAVadEDfdlAkdkkdeiealRaeilaq 245 (666)
T KOG4825|consen 206 GEELEELENDKGCAVADEDFDLAKDKKDEIEALRAEILAQ 245 (666)
T ss_pred HHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 3467788888889999999999999999999999887653
No 25
>PRK00420 hypothetical protein; Validated
Probab=70.81 E-value=7 Score=32.48 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=20.5
Q ss_pred eeecccccccc----ccccccccHHhhHh
Q 024979 96 ILFFFFQLDLA----TRVQCALNMEEYDI 120 (259)
Q Consensus 96 i~c~~cq~dl~----~RlgCp~cYe~F~~ 120 (259)
..||.||+.|. |...||.|-+.+..
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCeeee
Confidence 34999998776 49999999997774
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=65.94 E-value=4.9 Score=28.27 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=11.1
Q ss_pred ccccccHHhhHhHHHHHHHHHHHHH
Q 024979 109 VQCALNMEEYDIAQQLRNKLTEVEE 133 (259)
Q Consensus 109 lgCp~cYe~F~~a~~Lr~~L~~ih~ 133 (259)
+-||.|.+.|+. +.|..=+...|.
T Consensus 3 f~CP~C~~~~~~-~~L~~H~~~~H~ 26 (54)
T PF05605_consen 3 FTCPYCGKGFSE-SSLVEHCEDEHR 26 (54)
T ss_pred cCCCCCCCccCH-HHHHHHHHhHCc
Confidence 345555554443 344444444443
No 27
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.85 E-value=19 Score=38.46 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHH---HHHHHhhchhhHHHHHHhhhHHHHHHH
Q 024979 121 AQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLR---ADLQKAIDSENYALAADLRDQICKLEA 189 (259)
Q Consensus 121 a~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk---~~Lq~AIe~E~YE~AA~lRDeIr~Le~ 189 (259)
|+.+..+++.+..+- .+.++......++.+|+ +.++.||+.||||.||..=+++..|-+
T Consensus 100 Ae~Vs~kVr~lDla~----------~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~ 161 (773)
T KOG0412|consen 100 AETVSGKVRALDLAQ----------NRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQ 161 (773)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH
Confidence 346666666665552 22455555666677777 467899999999999977776666633
No 28
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.83 E-value=45 Score=29.67 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.4
Q ss_pred eccccccccccccccccHHh
Q 024979 98 FFFFQLDLATRVQCALNMEE 117 (259)
Q Consensus 98 c~~cq~dl~~RlgCp~cYe~ 117 (259)
|++|+ .-.+++-|+.|-..
T Consensus 2 C~iC~-~~~~~~~C~~C~~~ 20 (302)
T PF10186_consen 2 CPICH-NSRRRFYCANCVNN 20 (302)
T ss_pred CCCCC-CCCCCeECHHHHHH
Confidence 99999 57789999999765
No 29
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.57 E-value=89 Score=33.39 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=21.5
Q ss_pred ccccCcEEEeeccCccEEEEccc
Q 024979 207 AFRLGQKVNHKIFGYRAVICGMD 229 (259)
Q Consensus 207 ~FrVGqVvrHr~ygYrGVIvgWD 229 (259)
.|++||.|..+.+|-.|.|+..+
T Consensus 636 ~~~~Gd~V~v~~~~~~g~v~~i~ 658 (782)
T PRK00409 636 ELKVGDEVKYLSLGQKGEVLSIP 658 (782)
T ss_pred CCCCCCEEEEccCCceEEEEEEc
Confidence 49999999999999999999885
No 30
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=58.42 E-value=71 Score=23.97 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHH--HHhhhHHHHHHHhhh
Q 024979 150 EAQDKALSIIRLRADLQKAIDSENYALA--ADLRDQICKLEAESL 192 (259)
Q Consensus 150 ea~d~~~~L~~Lk~~Lq~AIe~E~YE~A--A~lRDeIr~Le~~~~ 192 (259)
+..+...++..++.+|..++..+++..+ ..+.++|..++.+..
T Consensus 60 ~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~ 104 (125)
T PF13801_consen 60 EMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELR 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4445777888999999999999987644 456666666665554
No 31
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=54.91 E-value=8.1 Score=34.10 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=1.7
Q ss_pred HHHHHhhhHHHHHHHhh
Q 024979 175 ALAADLRDQICKLEAES 191 (259)
Q Consensus 175 E~AA~lRDeIr~Le~~~ 191 (259)
++..+||||++.|++++
T Consensus 31 ~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 31 EEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HCH--------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46679999999999888
No 32
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=53.47 E-value=8.9 Score=37.83 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.1
Q ss_pred ccccccCcEEEeeccCccEEEE-cccc
Q 024979 205 RFAFRLGQKVNHKIFGYRAVIC-GMDP 230 (259)
Q Consensus 205 ~v~FrVGqVvrHr~ygYrGVIv-gWDp 230 (259)
.-+|.-||.|+|+.|||+|||+ -|+.
T Consensus 64 ~~~~etgqsF~h~~f~yvgvv~~~w~a 90 (386)
T KOG4408|consen 64 TQKYETGQSFLHDTFGYVGVVLFPWAA 90 (386)
T ss_pred CCcccccceeeeeecccceEEEEechH
Confidence 3479999999999999999986 5665
No 33
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=52.69 E-value=14 Score=26.81 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.0
Q ss_pred cccCcEEEeeccCccEEEEcc
Q 024979 208 FRLGQKVNHKIFGYRAVICGM 228 (259)
Q Consensus 208 FrVGqVvrHr~ygYrGVIvgW 228 (259)
|++||+|+.|.-|-+.+|...
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v 21 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEV 21 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEc
Confidence 899999999999999999844
No 34
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=49.44 E-value=43 Score=28.68 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHH
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQIC 185 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr 185 (259)
.+....+..+..+|..+++.++|+.|+..=.+++
T Consensus 107 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLk 140 (157)
T TIGR00714 107 KRVKKMFQTRHQLLVEQLDNQTWAAAADYTRKLR 140 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455666777788889999999999885544443
No 35
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=47.81 E-value=1e+02 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=15.5
Q ss_pred HhhHhHHHHHHHHHHHHHhh
Q 024979 116 EEYDIAQQLRNKLTEVEEEI 135 (259)
Q Consensus 116 e~F~~a~~Lr~~L~~ih~~~ 135 (259)
=+.+.|+.|-|.|+.+=.+.
T Consensus 3 FTl~EA~~lLP~l~~~~~~~ 22 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEI 22 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 35678899999988877665
No 36
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=47.43 E-value=8.7 Score=28.14 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=20.1
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.|||.+.|. +..+.|++||+.+.+
T Consensus 24 A~aGFyy~~~---------------~d~v~C~~C~~~l~~ 48 (70)
T PF00653_consen 24 ARAGFYYTGT---------------GDRVRCFYCGLELDN 48 (70)
T ss_dssp HHTTEEEESS---------------TTEEEETTTTEEEES
T ss_pred HHCCCEEcCC---------------CCEEEEeccCCEEeC
Confidence 6789999763 678899999997743
No 37
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=47.38 E-value=88 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhch-hhHHHHHHh
Q 024979 151 AQDKALSIIRLRADLQKAIDS-ENYALAADL 180 (259)
Q Consensus 151 a~d~~~~L~~Lk~~Lq~AIe~-E~YE~AA~l 180 (259)
..+...++..+..+|.++++. .+|+.|+..
T Consensus 123 ~~e~~~~~~~~~~~l~~~~~~~~d~~~A~~~ 153 (176)
T PRK03578 123 LAELRDERRERYAELGALLDSRGDDQAAAEA 153 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 345666777777888888877 789988843
No 38
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=46.87 E-value=6.9 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=15.8
Q ss_pred eeeccccccccc----------cccccccHHhh
Q 024979 96 ILFFFFQLDLAT----------RVQCALNMEEY 118 (259)
Q Consensus 96 i~c~~cq~dl~~----------RlgCp~cYe~F 118 (259)
|.|+.|+..+.- .++|+.|-..|
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 567777765543 68888887765
No 39
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=45.91 E-value=60 Score=28.46 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHH----------HhhhHHHHHHHhh
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAA----------DLRDQICKLEAES 191 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA----------~lRDeIr~Le~~~ 191 (259)
.+....+..+..+|..+++.++|+.|+ +|.++|+.++.++
T Consensus 121 ~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~~~~~~l 170 (173)
T PRK01773 121 KEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIERVEEKL 170 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556667778888888899999888 4555555555443
No 40
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.45 E-value=1.5e+02 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.7
Q ss_pred hhchhhHH----HHHHhhhHHHHHHHhhhhh
Q 024979 168 AIDSENYA----LAADLRDQICKLEAESLAA 194 (259)
Q Consensus 168 AIe~E~YE----~AA~lRDeIr~Le~~~~Aa 194 (259)
.|..|+|+ .+++-|+++..|++.+.+-
T Consensus 55 lVsREEFdvq~qvl~rtR~kl~~Leari~~L 85 (103)
T COG2960 55 LVSREEFDVQRQVLLRTREKLAALEARIEEL 85 (103)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899998 6788899999988877543
No 41
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=44.26 E-value=56 Score=28.37 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHH----------HhhhHHHHHHHh
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAA----------DLRDQICKLEAE 190 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA----------~lRDeIr~Le~~ 190 (259)
.+....+..+..+|..+++..+|+.|+ +|.++|+..+.+
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~~ei~~~~~~ 168 (171)
T PRK05014 120 KRVKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLRSEVEQLEEK 168 (171)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677778888999999999888 455555555544
No 42
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.81 E-value=43 Score=32.35 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHh----hchhhHHHHH-----HhhhHHHHHHHhhhh
Q 024979 152 QDKALSIIRLRADLQKA----IDSENYALAA-----DLRDQICKLEAESLA 193 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~A----Ie~E~YE~AA-----~lRDeIr~Le~~~~A 193 (259)
.|...+|.+||.+|.+. ||+|=-..-| +-|-+|+.|++-++.
T Consensus 85 ~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 85 HDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777653 5555433223 569999999887763
No 43
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=41.06 E-value=9.6 Score=25.29 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=15.9
Q ss_pred eeeccccccccc----------cccccccHHhhH
Q 024979 96 ILFFFFQLDLAT----------RVQCALNMEEYD 119 (259)
Q Consensus 96 i~c~~cq~dl~~----------RlgCp~cYe~F~ 119 (259)
|.||.|+..+.- ++.||.|-..|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 567777764432 778888877664
No 44
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=40.87 E-value=1.5e+02 Score=25.99 Aligned_cols=66 Identities=23% Similarity=0.198 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHH
Q 024979 122 QQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (259)
Q Consensus 122 ~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~ 189 (259)
.-||-++.-|....+. .+|.|......-.-+...+.+=+..++..-+.-.-++|++-|.||.-|+.
T Consensus 24 ~tiRli~AAik~~ei~--~rk~~l~d~~il~vl~k~iKQRrdS~~~y~~agR~dLa~kE~~Ei~Ii~~ 89 (148)
T COG1610 24 GTIRLILAAIKQEEID--ERKDELDDEEILKVLAKEIKQRRDSAEEYEKAGRQDLAAKERAEIAIIEE 89 (148)
T ss_pred HHHHHHHHHHHHHHHH--ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhHHHHHHH
Confidence 3577777888877744 66788554444456777777778888888888888999999999998863
No 45
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.83 E-value=3e+02 Score=29.47 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.9
Q ss_pred ccCcEEEeeccCccEEEEccc
Q 024979 209 RLGQKVNHKIFGYRAVICGMD 229 (259)
Q Consensus 209 rVGqVvrHr~ygYrGVIvgWD 229 (259)
++||.|+-+.+|-.|.|+..+
T Consensus 626 ~~Gd~V~v~~~~~~g~v~~i~ 646 (771)
T TIGR01069 626 KIGDKVRIRYFGQKGKIVQIL 646 (771)
T ss_pred CCCCEEEEccCCceEEEEEEc
Confidence 999999999999999999885
No 46
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=40.43 E-value=19 Score=32.98 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=27.5
Q ss_pred cccccccccCcEEEe-------------eccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 202 ENARFAFRLGQKVNH-------------KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 202 ~n~~v~FrVGqVvrH-------------r~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
.....+|+|||.|+- -.-|..|+|+-.-..+-.++. .. .. .....||+|+|
T Consensus 129 ~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~rg~~G~I~~~~g~~~~pd~---~a--~g-~~~~~~~lY~V 192 (222)
T PF02211_consen 129 VDAPPRFAVGDRVRVRNLPPPGHTRLPRYVRGKTGTIERVHGAFVFPDS---NA--HG-RGEAPQPLYTV 192 (222)
T ss_dssp TSSS-SS-TT-EEEE-----SS--SS-GGGTT-EEEEEEEEEEE--HHH---HT--TT-SSTT-EEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCCcccccHhhCCCeeEEEEEecCCCCcch---hc--cC-CCCCCcceEEE
Confidence 345569999999965 234677999966666655542 11 11 12337899987
No 47
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=40.06 E-value=1.5e+02 Score=21.89 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=42.8
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 117 EYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 117 ~F~~a~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
.|+..+.+..+|.+..-..+. .....+..++.....+|+..|. ++|..-...-|+|..|+....
T Consensus 5 ~fd~~~~~~~~l~~~s~~~i~-----------~~~~~L~~~i~~~~~eLr~~V~-~nY~~fI~as~~I~~m~~~~~ 68 (87)
T PF08700_consen 5 NFDVDEYFKDLLKNSSIKEIR-----------QLENKLRQEIEEKDEELRKLVY-ENYRDFIEASDEISSMENDLS 68 (87)
T ss_pred cCCHHHHHHHHHhhCCHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH
Confidence 455555666666554322211 2223466677788889998886 689888888899998888765
No 48
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=39.51 E-value=16 Score=26.28 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=18.9
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.|||.+.|. ...+.|++|++.+..
T Consensus 22 a~~Gfyy~~~---------------~d~v~C~~C~~~~~~ 46 (69)
T cd00022 22 AEAGFYYTGR---------------GDEVKCFFCGLELKN 46 (69)
T ss_pred HHcCCeEcCC---------------CCEEEeCCCCCCccC
Confidence 4678888654 346889999998765
No 49
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.12 E-value=1.6e+02 Score=25.49 Aligned_cols=67 Identities=4% Similarity=0.071 Sum_probs=45.7
Q ss_pred cccHHhhHhHHHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhchhhHH--HHHHhhhHHHHHHH
Q 024979 112 ALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYA--LAADLRDQICKLEA 189 (259)
Q Consensus 112 p~cYe~F~~a~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE--~AA~lRDeIr~Le~ 189 (259)
.--|..... +=..+++.||.+- .++..++..+|-..+.+|+.++.....+ .+.+|..||..|..
T Consensus 38 ~~~~~~LT~--EQQa~~q~I~~~f------------~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 38 QQNAAPLTT--EQQAAWQKIHNDF------------YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred ccccccCCH--HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 334544554 4455677777663 2455567778888899999998888755 44578888888877
Q ss_pred hhh
Q 024979 190 ESL 192 (259)
Q Consensus 190 ~~~ 192 (259)
++.
T Consensus 104 kL~ 106 (143)
T PRK11546 104 SLD 106 (143)
T ss_pred HHH
Confidence 664
No 50
>CHL00095 clpC Clp protease ATP binding subunit
Probab=38.49 E-value=78 Score=33.66 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~A 193 (259)
.+..+|..++.+.+.++.+++|+.++.+|++...+++++.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (821)
T CHL00095 414 ELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAA 454 (821)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888999999999999999998888776654
No 51
>PHA00743 helix-turn-helix protein
Probab=37.93 E-value=1.3e+02 Score=22.07 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhhhhhcccC
Q 024979 123 QLRNKLTEVEEEISRQLEAKRG 144 (259)
Q Consensus 123 ~Lr~~L~~ih~~~~~~h~GK~p 144 (259)
++|++|.-||.=-+-.-.++.|
T Consensus 7 ~iReLLs~iheIKID~i~~~~~ 28 (51)
T PHA00743 7 DVRELLSIIHEIKIDIITQSYD 28 (51)
T ss_pred HHHHHHHHHHHHhhhhhcccCC
Confidence 8999999999654444455555
No 52
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=36.27 E-value=24 Score=28.12 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=17.0
Q ss_pred ccccccccHHhhHhHHHHHHHHHHH
Q 024979 107 TRVQCALNMEEYDIAQQLRNKLTEV 131 (259)
Q Consensus 107 ~RlgCp~cYe~F~~a~~Lr~~L~~i 131 (259)
.-++||+|...+. .|.+++++.
T Consensus 20 ~d~~Cp~C~~~~~---~~~~~~~~~ 41 (162)
T PF13462_consen 20 FDFQCPHCAKFHE---ELEKLLKKY 41 (162)
T ss_dssp E-TTSHHHHHHHH---HHHHHHHHH
T ss_pred ECCCCHhHHHHHH---HHhhhhhhc
Confidence 3569999999888 677888874
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=36.27 E-value=1.4e+02 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHHHHHHhhchhh-HHHHHH
Q 024979 160 RLRADLQKAIDSEN-YALAAD 179 (259)
Q Consensus 160 ~Lk~~Lq~AIe~E~-YE~AA~ 179 (259)
.+...+..+++.++ |+.|+.
T Consensus 129 ~l~~~~~~~~~~~~~~~~A~~ 149 (173)
T PRK00294 129 ELNESFAACWDDAARREEAER 149 (173)
T ss_pred HHHHHHHHHHhccccHHHHHH
Confidence 34444444444433 888873
No 54
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=36.11 E-value=1e+02 Score=27.92 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhc--hhhHHHHHHhhhHHHHHHHhhhhhhHhhhhhcccccccccCcEEEeeccCcc---EEEEcc
Q 024979 154 KALSIIRLRADLQKAID--SENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYR---AVICGM 228 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe--~E~YE~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v~FrVGqVvrHr~ygYr---GVIvgW 228 (259)
.+.++.++++++..... .++.+.=-.++.++..++++..+.. ..+.+..-.+..|-||+-+.-++. |||+..
T Consensus 20 ~~~~~~~~e~~~~~i~~~~~~~v~~y~~l~~~l~~~~~~~~~~i---~~p~~~~~fL~~GRlV~v~~~~~~~~wgvvv~~ 96 (268)
T PF13234_consen 20 LEKKLKELEEELDAIKIEDEEDVEEYYDLRQELEELRKELRKII---TSPKYCLPFLQPGRLVVVRDGDRDFGWGVVVNF 96 (268)
T ss_dssp HHHHHHHHHHHHHCS--TTCTCCHHHHHHHHHHHHHHHHHHHHH---CTCCCHHHHS-TTEEEEEEETTCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcccccHhHHHHHHHHHHHHHHHHHHHHHHH---hCcHHHHHhCCCCCEEEEecCCCccceeEEEec
Confidence 44556666666655443 2346666788888888888876443 233333336899999977633332 788887
Q ss_pred cccc
Q 024979 229 DPVC 232 (259)
Q Consensus 229 Dp~c 232 (259)
+...
T Consensus 97 ~~~~ 100 (268)
T PF13234_consen 97 AKKS 100 (268)
T ss_dssp EE--
T ss_pred cccc
Confidence 7665
No 55
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.78 E-value=1.1e+02 Score=34.22 Aligned_cols=26 Identities=8% Similarity=0.406 Sum_probs=20.1
Q ss_pred cccccHHhhHhHHHHHHHHHHHHHhh
Q 024979 110 QCALNMEEYDIAQQLRNKLTEVEEEI 135 (259)
Q Consensus 110 gCp~cYe~F~~a~~Lr~~L~~ih~~~ 135 (259)
.||+|-..|.....+...+..+...+
T Consensus 679 ~C~LC~R~f~~eee~~~f~~~L~~~~ 704 (1311)
T TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKL 704 (1311)
T ss_pred cCCCCCCCCCChhHHHHHHHHHHHHH
Confidence 79999999987666667777777663
No 56
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=34.71 E-value=89 Score=29.74 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=36.2
Q ss_pred cccccccHHhhHhHHHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~L 187 (259)
--.++.-|++|+. .-+-|++++..++-.+..| ..+..+|..|+.+ ++ +-.+-..|+++|..+
T Consensus 116 e~~~a~~~d~yR~---~LK~IR~~E~sl~p~R~~r---------~~l~d~I~kLk~k-----~P-~s~kl~~LeqELvra 177 (271)
T PF13805_consen 116 EDQYADRLDQYRI---HLKSIRNREESLQPSRDRR---------RKLQDEIAKLKYK-----DP-QSPKLVVLEQELVRA 177 (271)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH------T-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHh---------HHHHHHHHHHHhc-----CC-CChHHHHHHHHHHHH
Confidence 4457888999995 4445777777764322222 2244555555432 12 233445566666665
Q ss_pred HHhhh
Q 024979 188 EAESL 192 (259)
Q Consensus 188 e~~~~ 192 (259)
|.+..
T Consensus 178 Eae~l 182 (271)
T PF13805_consen 178 EAENL 182 (271)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55554
No 57
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.41 E-value=38 Score=21.07 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=12.4
Q ss_pred HHhhhHHHHHHHhhhh
Q 024979 178 ADLRDQICKLEAESLA 193 (259)
Q Consensus 178 A~lRDeIr~Le~~~~A 193 (259)
-.+|++|+.||.++..
T Consensus 4 ~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 4 NRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678888888888764
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.08 E-value=1.4e+02 Score=32.93 Aligned_cols=69 Identities=25% Similarity=0.272 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh--chhhHH-HHHHhh---hHHHHHHHhhhhhh
Q 024979 122 QQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAI--DSENYA-LAADLR---DQICKLEAESLAAS 195 (259)
Q Consensus 122 ~~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AI--e~E~YE-~AA~lR---DeIr~Le~~~~AaS 195 (259)
+.|++.|.++..|+. +..++..-+..++.+||.++...+ ..|.|+ +=-+++ -.+.+|..+.++.+
T Consensus 545 q~ikdqldelskE~e---------sk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e~ 615 (1118)
T KOG1029|consen 545 QAIKDQLDELSKETE---------SKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEAES 615 (1118)
T ss_pred HHHHHHHHHHHHHHH---------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 578888888888861 334566668888999998876543 334455 222222 34445555555544
Q ss_pred Hhhh
Q 024979 196 ATAL 199 (259)
Q Consensus 196 a~al 199 (259)
+.|.
T Consensus 616 ~~as 619 (1118)
T KOG1029|consen 616 APAS 619 (1118)
T ss_pred chhh
Confidence 4443
No 59
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=32.15 E-value=1.3e+02 Score=26.95 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhH
Q 024979 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa 196 (259)
...||.++|++|...=..++|.+=|++--+|..|-++.+--|+
T Consensus 49 ~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~qs~ 91 (175)
T KOG4253|consen 49 KVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQSK 91 (175)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5558899999999988999999999999999999888875443
No 60
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=31.66 E-value=18 Score=30.18 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=16.1
Q ss_pred ecccccccc-ccccccccHHhhH
Q 024979 98 FFFFQLDLA-TRVQCALNMEEYD 119 (259)
Q Consensus 98 c~~cq~dl~-~RlgCp~cYe~F~ 119 (259)
||.||=.|. |+|.||.|....+
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~ 23 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIE 23 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEE
Confidence 788887765 3888888877644
No 61
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=31.53 E-value=2.1e+02 Score=21.02 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHH
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLE 188 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le 188 (259)
.+....+..+..+|..+++..+|+.|+.+=.+++=+.
T Consensus 34 ~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~ 70 (78)
T PF07743_consen 34 KEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQ 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 4456667778888999999999999986666655443
No 62
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.50 E-value=1e+02 Score=31.55 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHH--HhhchhhHHHHHHhhhHHHHHHHhhhh
Q 024979 153 DKALSIIRLRADLQ--KAIDSENYALAADLRDQICKLEAESLA 193 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq--~AIe~E~YE~AA~lRDeIr~Le~~~~A 193 (259)
+++.+|..||.+++ .+...+.-++-.++.++|+.|+.+.+|
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777776666 233333344555888888888888764
No 63
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=31.09 E-value=1.6e+02 Score=28.47 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhchhh------HH------HHHHhhhHHHHHHHhhh
Q 024979 154 KALSIIRLRADLQKAIDSEN------YA------LAADLRDQICKLEAESL 192 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe~E~------YE------~AA~lRDeIr~Le~~~~ 192 (259)
..+.++++...|.+||+.-- || ...+|+|+-+.|.+++.
T Consensus 131 ti~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888999987543 33 34478899888877653
No 64
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=30.92 E-value=35 Score=26.59 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=14.9
Q ss_pred cccccccHHhhHhHHHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTE 130 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~ 130 (259)
-..||.|+..+. .|.+++.+
T Consensus 14 D~~Cp~C~~~~~---~l~~~~~~ 33 (154)
T cd03023 14 DYNCGYCKKLAP---ELEKLLKE 33 (154)
T ss_pred CCCChhHHHhhH---HHHHHHHH
Confidence 468999999876 67766544
No 65
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=63 Score=27.76 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=11.7
Q ss_pred cccccccCcEEEe
Q 024979 204 ARFAFRLGQKVNH 216 (259)
Q Consensus 204 ~~v~FrVGqVvrH 216 (259)
..+.|+||+||.|
T Consensus 64 ~~Ip~~vGdvF~~ 76 (131)
T KOG1760|consen 64 EDIPFKVGDVFIH 76 (131)
T ss_pred cccceehhhhhee
Confidence 5788999999988
No 66
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=29.77 E-value=1.4e+02 Score=25.86 Aligned_cols=65 Identities=15% Similarity=0.047 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhch----hhHHHHHHhhhHHHHHHHhhhhhhHhhhhhcccccccccCcEEE
Q 024979 149 SEAQDKALSIIRLRADLQKAIDS----ENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVN 215 (259)
Q Consensus 149 ~ea~d~~~~L~~Lk~~Lq~AIe~----E~YE~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v~FrVGqVvr 215 (259)
..-..++.+|.+|+.++..|-+. |.=++-+.+--+|+.|+..+..+-.-. +..+.-...+|..|.
T Consensus 34 ~G~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~Ii~--~~~~~d~V~~Gs~V~ 102 (160)
T PRK06342 34 AGLKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQLMP--DPASTDVVAFGSTVT 102 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEEEC--CCCCCCEEEeCcEEE
Confidence 33456777888888888777655 333344556678899998887443221 112223455577665
No 67
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=29.37 E-value=41 Score=26.10 Aligned_cols=25 Identities=0% Similarity=-0.047 Sum_probs=19.3
Q ss_pred cccccccHHhhHhHHHHHHHHHHHHHh
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTEVEEE 134 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~ih~~ 134 (259)
.-|=++||++|.. -+-|.|++-|++
T Consensus 51 ~AgD~esY~vF~~--lfdpvI~dyH~~ 75 (76)
T PF02807_consen 51 YAGDEESYDVFKE--LFDPVIEDYHGG 75 (76)
T ss_dssp --SSTTHHHHTHH--HHHHHHHHHTTT
T ss_pred eecChhHHHHHHH--HHHHHHHHHcCC
Confidence 3455899999997 889999987753
No 68
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=28.47 E-value=30 Score=25.60 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=12.7
Q ss_pred cccccHHhhHhHHHHHHHHHH
Q 024979 110 QCALNMEEYDIAQQLRNKLTE 130 (259)
Q Consensus 110 gCp~cYe~F~~a~~Lr~~L~~ 130 (259)
-||.|+.+++.+..|+.-|+-
T Consensus 26 tCP~C~a~~~~srnLrRHle~ 46 (54)
T PF09237_consen 26 TCPICGAVIRQSRNLRRHLEI 46 (54)
T ss_dssp E-TTT--EESSHHHHHHHHHH
T ss_pred CCCcchhhccchhhHHHHHHH
Confidence 378888888877777765554
No 69
>PF14282 FlxA: FlxA-like protein
Probab=27.80 E-value=1.7e+02 Score=23.47 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhh------HHHHHHhhhHHHHHHHhhh
Q 024979 150 EAQDKALSIIRLRADLQKAIDSEN------YALAADLRDQICKLEAESL 192 (259)
Q Consensus 150 ea~d~~~~L~~Lk~~Lq~AIe~E~------YE~AA~lRDeIr~Le~~~~ 192 (259)
....+..+|..|..+|+.+-.+++ -++...|..+|..|+.++.
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577888888888887776322 4466778888888877664
No 70
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.75 E-value=2.8e+02 Score=21.22 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.0
Q ss_pred hhchhhHH----HHHHhhhHHHHHHHhhhhh
Q 024979 168 AIDSENYA----LAADLRDQICKLEAESLAA 194 (259)
Q Consensus 168 AIe~E~YE----~AA~lRDeIr~Le~~~~Aa 194 (259)
.|-.|+|| ..+++|.+|..||.++.+-
T Consensus 46 lVtREEFd~q~~~L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 46 LVTREEFDAQKAVLARTREKLEALEARLAAL 76 (79)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689998 6678999999999988653
No 71
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=27.66 E-value=38 Score=23.83 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=14.3
Q ss_pred cccccccHHhhHhHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKL 128 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L 128 (259)
-..||.||..+. .|.+++
T Consensus 6 d~~Cp~C~~~~~---~l~~~~ 23 (98)
T cd02972 6 DPLCPYCYLFEP---ELEKLL 23 (98)
T ss_pred CCCCHhHHhhhH---HHHHHH
Confidence 457999999998 566665
No 72
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=27.47 E-value=3.1e+02 Score=23.98 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHH
Q 024979 123 QLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQI 184 (259)
Q Consensus 123 ~Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeI 184 (259)
+|+.+.+....+....+.++++ ....++..+..++..+|..+.|.+|+ +|+-+
T Consensus 60 qik~i~~~~r~~~k~~~~~~r~--------~~~~~m~a~~~~~~~Ll~a~~FDeaa-vral~ 112 (170)
T PRK12750 60 QLKEMREANRAEMKAKYSGNRE--------QSHAEMKAHHAKVQALVLADDFDEAA-ANDLA 112 (170)
T ss_pred HHHHHHHHHHHHHHhhhhhhhh--------hhHHHHHHHHHHHHHHHhcCCCCHHH-HHHHH
Confidence 6777666655554222333333 12335667888999999999999886 44443
No 73
>PRK10132 hypothetical protein; Provisional
Probab=26.93 E-value=1.7e+02 Score=23.96 Aligned_cols=14 Identities=21% Similarity=0.069 Sum_probs=9.2
Q ss_pred HHHHHHhhhHHHHH
Q 024979 174 YALAADLRDQICKL 187 (259)
Q Consensus 174 YE~AA~lRDeIr~L 187 (259)
-+++..+|+++...
T Consensus 40 ~~~~~~lR~r~~~~ 53 (108)
T PRK10132 40 KGEAEAARRKAQAL 53 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 55677777776554
No 74
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=26.78 E-value=64 Score=24.83 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHHH
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICKL 187 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~L 187 (259)
+|..+..+|+..|+...-++-.....+|+.+
T Consensus 2 eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~ 32 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRKQEREEAIAEIREL 32 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666555555544444444444443
No 75
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=26.56 E-value=2.7e+02 Score=24.34 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHh--hchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979 154 KALSIIRLRADLQKA--IDSENYALAADLRDQICKLEAESLAA 194 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~A--Ie~E~YE~AA~lRDeIr~Le~~~~Aa 194 (259)
....|.+.+.+|..+ +..-..+.+-+|.|++.+|+++++..
T Consensus 66 ~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~e 108 (146)
T PF05852_consen 66 LETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEFE 108 (146)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444332 55666788889999999999988743
No 76
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=25.71 E-value=38 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=18.2
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.|.|- +..+.|++|++.+..
T Consensus 24 A~~Gfyy~~~---------------~d~v~C~~C~~~l~~ 48 (71)
T smart00238 24 AEAGFYYTGV---------------GDEVKCFFCGGELDN 48 (71)
T ss_pred HHcCCeECCC---------------CCEEEeCCCCCCcCC
Confidence 4677777652 336889999998765
No 77
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=25.42 E-value=2.6e+02 Score=23.55 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=22.0
Q ss_pred HHHHHhhhHHHHHHHhhhhhhHhhhhhcccccccccCcEEEe
Q 024979 175 ALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNH 216 (259)
Q Consensus 175 E~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v~FrVGqVvrH 216 (259)
+.-+.+-.+|+.|++.+..+..-... ..+.-.-.+|.+|.=
T Consensus 54 ~~~~~~~~ri~~l~~~L~~a~ii~~~-~~~~~~V~~Gs~V~l 94 (157)
T PRK00226 54 EEQGFIEGRIRELEDKLSNAEVIDPS-KLSGGKVKFGSTVTL 94 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhCeecCcc-cCCCCEEecCCEEEE
Confidence 33445667788888888754432111 112234455777753
No 78
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.52 E-value=34 Score=31.61 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=15.1
Q ss_pred Cceeeccccccccc-cccccccHHhhH
Q 024979 94 EDILFFFFQLDLAT-RVQCALNMEEYD 119 (259)
Q Consensus 94 ~~i~c~~cq~dl~~-RlgCp~cYe~F~ 119 (259)
--+.|++|+..-.- |++||.|=+.-.
T Consensus 196 R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 196 RYLHCSLCGTEWRFVRIKCPYCGNTDH 222 (290)
T ss_dssp EEEEETTT--EEE--TTS-TTT---SS
T ss_pred EEEEcCCCCCeeeecCCCCcCCCCCCC
Confidence 56789999987554 999999977644
No 79
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=23.93 E-value=3.5e+02 Score=21.04 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHhhhHHHH
Q 024979 124 LRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDS--ENYALAADLRDQICK 186 (259)
Q Consensus 124 Lr~~L~~ih~~~~~~h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AIe~--E~YE~AA~lRDeIr~ 186 (259)
|+..|++.|.+ ..+.+... ...+..|..|..+++.++.. +....-..+.|.+..
T Consensus 2 L~~~L~~L~~e-----L~~~~~ld----~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~ 57 (85)
T PF14357_consen 2 LQELLEKLHQE-----LEQNPPLD----EETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNE 57 (85)
T ss_pred HHHHHHHHHHH-----HhcCCCCC----HHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 67788888866 44454222 22344566777777777766 444555556666554
No 80
>PHA00616 hypothetical protein
Probab=23.65 E-value=65 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=20.1
Q ss_pred ccccccHHhhHhHHHHHHHHHHHHHh
Q 024979 109 VQCALNMEEYDIAQQLRNKLTEVEEE 134 (259)
Q Consensus 109 lgCp~cYe~F~~a~~Lr~~L~~ih~~ 134 (259)
.+||.|=..|...+++..=+.+.|++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCC
Confidence 47999999999877777766665544
No 81
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=23.57 E-value=81 Score=24.64 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.0
Q ss_pred cccCcEEEeeccCcc---EEEEcccc
Q 024979 208 FRLGQKVNHKIFGYR---AVICGMDP 230 (259)
Q Consensus 208 FrVGqVvrHr~ygYr---GVIvgWDp 230 (259)
|.+||+|-.|..||. |+|.++..
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~ 26 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISR 26 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecC
Confidence 789999999999996 99987754
No 82
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=23.45 E-value=78 Score=23.23 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=19.2
Q ss_pred cccCcEEEeeccCcc---EEEEccc
Q 024979 208 FRLGQKVNHKIFGYR---AVICGMD 229 (259)
Q Consensus 208 FrVGqVvrHr~ygYr---GVIvgWD 229 (259)
|++||+|=-|.-||. |+|+.-+
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~ 25 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPD 25 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECC
T ss_pred CCCCCEEEEEeCCCCCCceEEeecc
Confidence 889999999999998 9998877
No 83
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=23.28 E-value=95 Score=31.62 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (259)
Q Consensus 158 L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~ 191 (259)
-..|++.+|.||+.-+=+.|+++.++|+.||...
T Consensus 367 Kt~Lrqkrq~A~e~~n~k~~~ey~~qL~~~E~~~ 400 (521)
T COG5296 367 KTELRQKRQRAIELKNKKAAMEYQRQLEEIEDNE 400 (521)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Confidence 3469999999999999999999999999998755
No 84
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.84 E-value=72 Score=25.49 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=27.4
Q ss_pred hhcccCCCCc--hHHHHHHHHHHHHHHHHHHhhchhhHH-HHHHhhhHHHHHHH
Q 024979 139 LEAKRGLSSK--SEAQDKALSIIRLRADLQKAIDSENYA-LAADLRDQICKLEA 189 (259)
Q Consensus 139 h~GK~p~~~~--~ea~d~~~~L~~Lk~~Lq~AIe~E~YE-~AA~lRDeIr~Le~ 189 (259)
+.|+.|.... .+...+..+|.-|+.+++.-=+-=.|. +=-.||++++.|+.
T Consensus 12 ~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 12 LDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred hcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777774221 222345666666766665432222232 12378888888754
No 85
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.81 E-value=2.5e+02 Score=23.21 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCC--CCchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 122 QQLRNKLTEVEEEISRQLEAKRGL--SSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 122 ~~Lr~~L~~ih~~~~~~h~GK~p~--~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
..|...|.+|...= -.-++ .......+...++.+.+.+|++|...-+.++-++-+++|.+-+.++.
T Consensus 46 ~GLe~AL~~v~~~C-----td~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 46 AGLEKALEEVKAHC-----TDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHhhc-----CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 46677777775321 11111 11233345777888899999999999999999988888887666654
No 86
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=61 Score=32.29 Aligned_cols=110 Identities=23% Similarity=0.201 Sum_probs=64.8
Q ss_pred cccccHHhhHhHHHHHHHHHHHHHhhhhhhhccc-----CC----CCchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHh
Q 024979 110 QCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKR-----GL----SSKSEAQDKALSIIRLRADLQKAIDSENYALAADL 180 (259)
Q Consensus 110 gCp~cYe~F~~a~~Lr~~L~~ih~~~~~~h~GK~-----p~----~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~l 180 (259)
-.+.|+|..+.|..|+.-|++.+..... .|+. |. -+..++.|-.-+-..|+..|..||-.|..-- -
T Consensus 57 IraK~~EYLdRAEkLK~yL~~~~~~~~k--~~~~a~a~~~~~k~~ds~~eg~d~~pe~kKLr~~L~sAIv~EKPNV---k 131 (439)
T KOG0739|consen 57 IRAKFTEYLDRAEKLKAYLKEKEKGAGK--KGDEAVATVPKGKKKDSDGEGEDDEPEKKKLRSALNSAIVREKPNV---K 131 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC--CCccccCCCCCCCCCCccccccCCChhHHHHHHHhhhhhhccCCCC---c
Confidence 4678999999999999999998755422 2222 11 1111222222345579999999998886321 1
Q ss_pred hhHHHHHHHhhhhhhHhhhhhcccccccccCcEEEeeccCccEEEEcccc
Q 024979 181 RDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGYRAVICGMDP 230 (259)
Q Consensus 181 RDeIr~Le~~~~AaSa~al~~~n~~v~FrVGqVvrHr~ygYrGVIvgWDp 230 (259)
=+.+-.||...+|--.+. -=.++| =|+|.|++-.++|+..=.-|
T Consensus 132 WsDVAGLE~AKeALKEAV----ILPIKF--PqlFtGkR~PwrgiLLyGPP 175 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAV----ILPIKF--PQLFTGKRKPWRGILLYGPP 175 (439)
T ss_pred hhhhccchhHHHHHHhhe----eecccc--hhhhcCCCCcceeEEEeCCC
Confidence 123344555444332221 112334 48889999999998754433
No 87
>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase. Three pathways for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium may favor trehalose, physiological concentrations of trehalose may be much greater than that of maltose and TreS may act largely in its degradation. This model describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.
Probab=22.00 E-value=8.9e+02 Score=25.00 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhcccCC-CCch-HHHHHHHHHHHHHHHHHHhhc----------hhhHHHHHHhhhHHHHH
Q 024979 120 IAQQLRNKLTEVEEEISRQLEAKRGL-SSKS-EAQDKALSIIRLRADLQKAID----------SENYALAADLRDQICKL 187 (259)
Q Consensus 120 ~a~~Lr~~L~~ih~~~~~~h~GK~p~-~~~~-ea~d~~~~L~~Lk~~Lq~AIe----------~E~YE~AA~lRDeIr~L 187 (259)
.|..|...+.+||..-.. ...-|. ...+ ...+...-...+++++..+.+ .+.-+.|..|.+.-..|
T Consensus 286 ~a~~LG~rtAemH~aLA~--~~~~~aF~pep~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~l~~~~~~~~~~l~~~~~~l 363 (528)
T TIGR02457 286 FAGLLGRRLAELHLALAA--GGEDPAFAPEPISTLYQRSWYQDMRAQAERALQLLAQSRDGLPAAARALADRLLAQRKEL 363 (528)
T ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHH
Confidence 356899999999987422 222221 0111 112233333334444444433 33445666666666655
Q ss_pred HHhhhhhhHhhhhhccccc--ccccCcEEEeeccCccEEEEcccccc
Q 024979 188 EAESLAASATALAFENARF--AFRLGQKVNHKIFGYRAVICGMDPVC 232 (259)
Q Consensus 188 e~~~~AaSa~al~~~n~~v--~FrVGqVvrHr~ygYrGVIvgWDp~c 232 (259)
.+...+........-..++ -|..|||.+= +=..||++|+-+=
T Consensus 364 ~~~~~~l~~~~~~~~k~RiHGD~HLgqvL~t---~~d~~IiDFEGEP 407 (528)
T TIGR02457 364 AAHLRPLVKREIDGLKIRIHGDFHLGQVLVV---QDDAVLIDFEGEP 407 (528)
T ss_pred HHHHHHHhhcCCCcceEeEecCcchhcEEEe---CCCeEEEcCCCCC
Confidence 5554432221110011123 5899999962 2346799997644
No 88
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=21.87 E-value=2.9e+02 Score=25.43 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHH---------HH---HHhhhHHHHHHHhhhhh
Q 024979 150 EAQDKALSIIRLRADLQKAIDSENYA---------LA---ADLRDQICKLEAESLAA 194 (259)
Q Consensus 150 ea~d~~~~L~~Lk~~Lq~AIe~E~YE---------~A---A~lRDeIr~Le~~~~Aa 194 (259)
+-.....-+..++.+|..-+.+|+-- .+ ..++.-|..++.+-+++
T Consensus 114 ~l~~l~~lf~~l~~eL~~H~~KEE~ilFP~i~~~~~~~~~~~~~~pI~~m~~EH~~~ 170 (224)
T PRK13276 114 YLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIAT 170 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccccchhhhhHHHHHHHHHHHH
Confidence 44457777888999999999888732 12 23677888888777543
No 89
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.79 E-value=3.6e+02 Score=23.25 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q 024979 153 DKALSIIRLRADLQK 167 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~ 167 (259)
....++.+|+.+|++
T Consensus 158 ~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 158 KLSEEIEKLKKELEK 172 (192)
T ss_pred hhHHHHHHHHHHHHH
Confidence 355566677777666
No 90
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.76 E-value=4.9e+02 Score=25.47 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHh---hchhhHHHHHHhhhHHHHHHHhhh
Q 024979 153 DKALSIIRLRADLQKA---IDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~A---Ie~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
..++++..|+..|++. ...|+-+.+.+++.+|++.+....
T Consensus 43 ~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 43 HQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHH
Confidence 3555677788877777 566777788888888887665443
No 91
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.76 E-value=2.3e+02 Score=27.85 Aligned_cols=14 Identities=0% Similarity=-0.190 Sum_probs=9.0
Q ss_pred ceeecccccccccc
Q 024979 95 DILFFFFQLDLATR 108 (259)
Q Consensus 95 ~i~c~~cq~dl~~R 108 (259)
...||.|+-.+..-
T Consensus 284 ~~~Cp~C~~~~~~~ 297 (562)
T PHA02562 284 GGVCPTCTQQISEG 297 (562)
T ss_pred CCCCCCCCCcCCCc
Confidence 34577777776654
No 92
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=21.73 E-value=1.2e+02 Score=26.78 Aligned_cols=6 Identities=17% Similarity=-0.070 Sum_probs=3.4
Q ss_pred eccccc
Q 024979 98 FFFFQL 103 (259)
Q Consensus 98 c~~cq~ 103 (259)
|||||-
T Consensus 3 CPfC~~ 8 (156)
T COG1327 3 CPFCGH 8 (156)
T ss_pred CCCCCC
Confidence 555554
No 93
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=21.60 E-value=44 Score=25.74 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=17.5
Q ss_pred ccccCcEEEeeccCccEEEEcccccc
Q 024979 207 AFRLGQKVNHKIFGYRAVICGMDPVC 232 (259)
Q Consensus 207 ~FrVGqVvrHr~ygYrGVIvgWDp~c 232 (259)
.|++||.|.|..+|- |+|.|....-
T Consensus 1 mf~~GD~VVh~~~Gv-~~i~~i~~~~ 25 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGV-GRIEGIEEIE 25 (98)
T ss_dssp T--TTSEEEETTTEE-EEEEEEEEEE
T ss_pred CCCCCCEEEECCCce-EEEEEEEEEe
Confidence 489999999999884 6777765543
No 94
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=21.57 E-value=4.3e+02 Score=23.53 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHH---HHHHhhchh-hHHHHHHhhhHHHHHHHhh
Q 024979 149 SEAQDKALSIIRLRA---DLQKAIDSE-NYALAADLRDQICKLEAES 191 (259)
Q Consensus 149 ~ea~d~~~~L~~Lk~---~Lq~AIe~E-~YE~AA~lRDeIr~Le~~~ 191 (259)
.+..+...+|.+|.. .|+..+..| ++.+-.+|..+|+.|++++
T Consensus 175 ~~~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 175 WERIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKEL 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 333334444444443 333345555 5888888999999888763
No 95
>PRK05231 homoserine kinase; Provisional
Probab=21.56 E-value=5.8e+02 Score=22.88 Aligned_cols=33 Identities=3% Similarity=-0.107 Sum_probs=18.9
Q ss_pred ccccCcEEEeeccCccEEEEcccccccCChhHHHH
Q 024979 207 AFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEI 241 (259)
Q Consensus 207 ~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~ 241 (259)
=|..+-++.+. +-...|++||-.|....-....
T Consensus 193 D~~~~Nil~~~--~~~~~iIDf~~~~~~~~~~DlA 225 (319)
T PRK05231 193 DLFRDNVLFEG--DRLSGFIDFYFACNDKLLYDVA 225 (319)
T ss_pred CCCCCcEEEEC--CceEEEEecccccCCchHHHHH
Confidence 35556655541 2223466999988765544433
No 96
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=21.36 E-value=60 Score=26.71 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=19.4
Q ss_pred ccccCcEEE------------e-eccCccEEEEcccccc
Q 024979 207 AFRLGQKVN------------H-KIFGYRAVICGMDPVC 232 (259)
Q Consensus 207 ~FrVGqVvr------------H-r~ygYrGVIvgWDp~c 232 (259)
.|++||.|. | +--|+.|+|+|--..|
T Consensus 32 ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~a 70 (98)
T COG2139 32 EYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRA 70 (98)
T ss_pred hccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCE
Confidence 799999982 3 5568889998865544
No 97
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=21.05 E-value=38 Score=33.42 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.6
Q ss_pred eccccccc-------------cccccccccHHhhHh
Q 024979 98 FFFFQLDL-------------ATRVQCALNMEEYDI 120 (259)
Q Consensus 98 c~~cq~dl-------------~~RlgCp~cYe~F~~ 120 (259)
||.||..+ .+|.+|++|-.+|=.
T Consensus 365 Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~ 400 (421)
T COG5151 365 CFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCS 400 (421)
T ss_pred ceeccCCCCCCCCCcccccccccceechhhhhhhhh
Confidence 99999844 559999999999974
No 98
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.44 E-value=3.5e+02 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=2.5
Q ss_pred cccccccHHhhHhHHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLT 129 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~ 129 (259)
-++|-..|-.|- .|++.+.
T Consensus 41 l~~~I~ly~l~q---kl~~~~r 59 (190)
T PF06936_consen 41 LFGCILLYLLWQ---KLSPSFR 59 (190)
T ss_dssp ------------------HHHH
T ss_pred HHHHHHHHHHHH---HHHHHHH
Confidence 688988888887 5777763
No 99
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.16 E-value=4.1e+02 Score=21.41 Aligned_cols=45 Identities=13% Similarity=-0.033 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhHhhh
Q 024979 150 EAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATAL 199 (259)
Q Consensus 150 ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa~al 199 (259)
.-.+++.++..++.+++++-. +=+.|+.+|+.|+.........||
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~-----~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKA-----RNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhCcHHHHHHHHH
Confidence 344566666677766665532 235678888888775555554444
No 100
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=20.15 E-value=37 Score=34.29 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=18.5
Q ss_pred cCceeeccccccccc--ccccccc
Q 024979 93 NEDILFFFFQLDLAT--RVQCALN 114 (259)
Q Consensus 93 ~~~i~c~~cq~dl~~--RlgCp~c 114 (259)
.....|++|+.|+++ ++-|+.|
T Consensus 12 g~ky~C~~C~~dit~~i~ikCaeC 35 (438)
T KOG0457|consen 12 GGKYNCDYCSLDITGLIRIKCAEC 35 (438)
T ss_pred CCCCCCccHhHHhccceEEEeecC
Confidence 367889999999999 6788877
Done!