Query 024979
Match_columns 259
No_of_seqs 211 out of 501
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vbv_A Hypothetical protein B0 99.8 6E-21 2E-25 152.5 2.8 52 205-258 3-54 (105)
2 1e52_A Excinuclease ABC subuni 98.2 1.2E-06 4.1E-11 64.4 4.7 40 153-192 21-60 (63)
3 2d7d_A Uvrabc system protein B 96.9 0.00045 1.5E-08 68.3 3.8 38 153-190 623-660 (661)
4 1c4o_A DNA nucleotide excision 96.4 0.00051 1.7E-08 68.0 0.0 39 153-191 608-646 (664)
5 3pxg_A Negative regulator of g 90.1 0.32 1.1E-05 45.8 5.2 44 151-194 396-439 (468)
6 3lay_A Zinc resistance-associa 76.5 6.6 0.00022 33.4 6.9 42 153-194 89-132 (175)
7 2lf0_A Uncharacterized protein 72.4 6.2 0.00021 32.3 5.4 47 148-194 9-55 (123)
8 3uo3_A J-type CO-chaperone JAC 66.5 7.2 0.00025 32.9 4.9 36 152-187 128-163 (181)
9 3hho_A CO-chaperone protein HS 65.4 10 0.00035 31.5 5.5 39 152-190 123-171 (174)
10 4a4z_A Antiviral helicase SKI2 64.6 8.1 0.00028 40.1 5.7 73 154-229 552-633 (997)
11 1fpo_A HSC20, chaperone protei 61.2 20 0.00067 29.7 6.5 28 152-179 119-146 (171)
12 3pxi_A Negative regulator of g 57.7 11 0.00039 37.1 5.2 43 152-194 397-439 (758)
13 3mjh_B Early endosome antigen 53.6 2.9 0.0001 27.0 0.1 26 108-133 5-30 (34)
14 3sja_C Golgi to ER traffic pro 52.6 30 0.001 25.3 5.4 45 152-196 9-53 (65)
15 3vlc_E Golgi to ER traffic pro 51.7 23 0.0008 27.6 5.0 48 148-195 29-76 (94)
16 3he5_B Synzip2; heterodimeric 49.0 38 0.0013 23.4 5.2 16 177-192 33-48 (52)
17 3v1a_A Computational design, M 46.4 42 0.0014 23.2 5.1 41 154-194 6-46 (48)
18 2lv2_A Insulinoma-associated p 46.4 8.3 0.00028 28.2 1.6 41 93-133 26-81 (85)
19 3sjb_C Golgi to ER traffic pro 46.0 22 0.00074 27.8 4.0 47 149-195 23-69 (93)
20 2fzt_A Hypothetical protein TM 43.6 25 0.00084 26.7 3.8 27 157-183 3-29 (79)
21 3mes_A Choline kinase; malaria 39.9 1.6E+02 0.0056 27.3 9.8 127 121-258 168-319 (424)
22 2cot_A Zinc finger protein 435 39.4 16 0.00054 24.5 2.1 39 86-124 9-62 (77)
23 1llm_C Chimera of ZIF23-GCN4; 37.8 19 0.00064 24.8 2.3 40 95-134 31-84 (88)
24 3i00_A HIP-I, huntingtin-inter 36.6 71 0.0024 25.5 5.8 38 154-192 20-57 (120)
25 2p06_A Hypothetical protein AF 36.5 1E+02 0.0035 24.0 6.5 27 157-186 64-90 (114)
26 2pih_A Protein YMCA; regulate 35.8 68 0.0023 26.0 5.7 44 149-192 40-83 (151)
27 1pjr_A PCRA; DNA repair, DNA r 35.3 7.9 0.00027 38.2 0.0 24 206-230 671-694 (724)
28 3mq7_A Bone marrow stromal ant 35.0 1.8E+02 0.0062 23.6 8.0 49 155-204 52-102 (121)
29 4dvc_A Thiol:disulfide interch 33.9 14 0.00049 28.5 1.3 20 109-131 31-50 (184)
30 1skv_A ORF D-63, hypothetical 33.7 1.4E+02 0.0049 22.0 6.8 28 115-144 11-38 (69)
31 3fx7_A Putative uncharacterize 33.7 1.7E+02 0.0057 22.7 8.0 77 112-191 8-86 (94)
32 1z6m_A Conserved hypothetical 32.8 20 0.00067 27.9 1.9 21 108-131 36-56 (175)
33 1x5w_A Zinc finger protein 64, 32.8 19 0.00065 23.6 1.6 34 93-126 7-55 (70)
34 3hht_B NitrIle hydratase beta 32.5 18 0.00062 32.0 1.9 50 203-258 137-199 (229)
35 1ed7_A Chitinase A1, (CHBD-CHI 32.5 8.1 0.00028 25.7 -0.3 22 204-225 4-25 (45)
36 2ct1_A Transcriptional repress 32.1 35 0.0012 22.7 2.9 33 94-126 14-63 (77)
37 3qyh_B CO-type nitrIle hydrata 32.0 19 0.00064 31.7 1.8 50 203-258 126-188 (219)
38 2dlq_A GLI-kruppel family memb 31.1 14 0.00048 26.5 0.8 41 94-134 65-120 (124)
39 3m1d_A Baculoviral IAP repeat- 30.8 17 0.00057 27.2 1.1 25 68-107 34-58 (85)
40 1yzm_A FYVE-finger-containing 30.4 1E+02 0.0036 21.4 5.1 39 154-192 7-45 (51)
41 2adr_A ADR1; transcription reg 29.5 7.5 0.00026 24.7 -0.9 19 108-126 30-48 (60)
42 2lce_A B-cell lymphoma 6 prote 29.5 26 0.00088 23.2 1.8 33 93-125 15-62 (74)
43 3siq_A Apoptosis 1 inhibitor; 29.4 17 0.00059 29.9 1.1 25 68-107 58-82 (136)
44 1se0_A Apoptosis 1 inhibitor; 29.1 18 0.00061 28.8 1.1 25 68-107 36-60 (116)
45 1z0k_B FYVE-finger-containing 29.0 1E+02 0.0035 22.7 5.1 40 153-192 24-63 (69)
46 1rpq_W Peptide E131; receptor- 28.6 15 0.00052 22.2 0.5 8 109-116 1-9 (26)
47 3a8g_B NitrIle hydratase subun 28.3 1.3E+02 0.0044 26.3 6.5 49 205-258 120-182 (212)
48 2ee8_A Protein ODD-skipped-rel 26.4 38 0.0013 23.7 2.4 31 94-124 16-61 (106)
49 2zzd_A Thiocyanate hydrolase s 26.4 26 0.0009 28.6 1.7 52 201-258 30-94 (126)
50 3bci_A Disulfide bond protein 26.2 28 0.00096 27.5 1.8 20 108-130 20-39 (186)
51 1jd5_A DIAP1, apoptosis 1 inhi 26.1 22 0.00074 28.7 1.1 25 68-107 48-72 (124)
52 1dxs_A P53-like transcription 26.1 18 0.00061 27.6 0.5 20 106-126 13-32 (80)
53 3uk3_C Zinc finger protein 217 25.1 24 0.00081 21.9 1.0 11 110-120 6-16 (57)
54 3ghg_A Fibrinogen alpha chain; 24.9 1.8E+02 0.006 29.1 7.4 41 153-193 114-156 (562)
55 2poi_A Baculoviral IAP repeat- 24.8 25 0.00084 26.9 1.1 25 68-107 43-67 (94)
56 3m9b_A Proteasome-associated A 24.5 90 0.0031 28.1 4.9 37 157-193 55-93 (251)
57 3hl5_A Baculoviral IAP repeat- 23.8 26 0.0009 26.6 1.1 25 68-107 34-58 (95)
58 2qfa_A Baculoviral IAP repeat- 23.8 28 0.00096 28.3 1.4 28 68-107 39-66 (142)
59 4aj5_1 SKA3, spindle and kinet 23.6 1.3E+02 0.0044 23.8 5.1 46 158-203 18-70 (101)
60 1g73_C Inhibitors of apoptosis 23.5 26 0.00089 28.0 1.1 25 68-107 48-72 (121)
61 2qra_D XIAP, baculoviral IAP r 23.4 27 0.00092 27.7 1.1 25 68-107 60-84 (111)
62 3gn3_A Putative protein-disulf 22.7 26 0.00088 28.7 0.9 21 108-131 23-43 (182)
63 4fm4_B NitrIle hydratase beta 21.6 16 0.00054 31.9 -0.6 48 205-258 116-176 (206)
64 2rem_A Disulfide oxidoreductas 21.5 32 0.0011 27.0 1.3 19 109-130 35-53 (193)
65 1gp8_A Protein (scaffolding pr 21.4 1E+02 0.0036 20.6 3.5 32 156-187 8-39 (40)
66 4b6x_A AVRRPS4, avirulence pro 21.4 2E+02 0.007 22.1 5.6 32 149-180 29-60 (90)
67 2lw1_A ABC transporter ATP-bin 21.1 1.8E+02 0.0063 21.3 5.4 37 158-194 38-75 (89)
68 3gyk_A 27KDA outer membrane pr 20.6 43 0.0015 25.9 1.8 20 108-130 31-50 (175)
69 3d9t_A Baculoviral IAP repeat- 20.6 33 0.0011 26.1 1.1 14 94-107 47-60 (97)
70 3c7m_A Thiol:disulfide interch 20.5 35 0.0012 26.6 1.3 11 109-119 27-37 (195)
71 2a3d_A Protein (de novo three- 20.3 1E+02 0.0036 22.4 3.6 38 149-186 26-69 (73)
72 3syn_E ATP-binding protein YLX 20.3 66 0.0023 18.9 2.1 18 171-188 3-20 (23)
73 1z0j_B FYVE-finger-containing 20.2 1.9E+02 0.0064 20.8 4.9 40 153-192 13-52 (59)
74 3ghg_A Fibrinogen alpha chain; 20.1 86 0.003 31.3 4.2 38 154-191 87-126 (562)
No 1
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=99.81 E-value=6e-21 Score=152.50 Aligned_cols=52 Identities=31% Similarity=0.555 Sum_probs=32.8
Q ss_pred ccccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 205 RFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 205 ~v~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
.++|+|||||+||+|||+|||+||||+|+++++|+..|..+ .++++||||||
T Consensus 3 ~~kf~IGqvvrHr~~gyrGVI~d~Dp~~~~~eew~~~~~~~--~~~~~QPfYhV 54 (105)
T 1vbv_A 3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN--DELRAAPWYHV 54 (105)
T ss_dssp CCSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEE
T ss_pred cceecCCCEEEecccCCCEEEEeECcccCCCHHHHHhcccc--CccCCCCceEE
Confidence 56999999999999999999999999999999999999776 47999999997
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=98.22 E-value=1.2e-06 Score=64.42 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
+....|..|+.+|++|.++++||+||++||+|+.|+.++.
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l~ 60 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHh
Confidence 4666789999999999999999999999999999988753
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.93 E-value=0.00045 Score=68.33 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~ 190 (259)
++...|.+|+++|++|.++++||+||+|||+|++|+++
T Consensus 623 ~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 623 ERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 46667889999999999999999999999999999865
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.42 E-value=0.00051 Score=68.01 Aligned_cols=39 Identities=33% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~ 191 (259)
++...|.+|+++|++|.++++||+||+|||+|++|++++
T Consensus 608 ~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 608 DLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 356678889999999999999999999999999999876
No 5
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.13 E-value=0.32 Score=45.75 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979 151 AQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (259)
Q Consensus 151 a~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~Aa 194 (259)
-.++..+|.+++.+...++..+||++|++|++++..|+++++..
T Consensus 396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 439 (468)
T 3pxg_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDT 439 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34577789999999999999999999999999999999988754
No 6
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.49 E-value=6.6 Score=33.43 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHH--HHhhhHHHHHHHhhhhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALA--ADLRDQICKLEAESLAA 194 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~A--A~lRDeIr~Le~~~~Aa 194 (259)
++..+|..++.+|+.++..++|..| .++-++|.+|+.++...
T Consensus 89 ~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 89 ALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999999987654 47888888888877643
No 7
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=72.41 E-value=6.2 Score=32.30 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (259)
Q Consensus 148 ~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~Aa 194 (259)
+.|-+.+...|..++.+|..|+...|-+.-+++.++|..|+.++...
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788899999999999999999999999999999999887643
No 8
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=66.52 E-value=7.2 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHH
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~L 187 (259)
.+....+..+..+|..+++.++|+.|+.+=.+++=+
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~ 163 (181)
T 3uo3_A 128 KQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYW 163 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345667778888999999999999998554444433
No 9
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=65.37 E-value=10 Score=31.54 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHH----------HhhhHHHHHHHh
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAA----------DLRDQICKLEAE 190 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA----------~lRDeIr~Le~~ 190 (259)
.+....+..+..+|..+++.++|+.|+ +|+++|+.++.+
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~~~ 171 (174)
T 3hho_A 123 TKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQ 171 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778889999999999999998 556666666554
No 10
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=64.62 E-value=8.1 Score=40.14 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhch------hhHHHHHHhhhHHHHHHHhhhhhhHhhhhhcccccccccCcEEEeecc--Cc-cEE
Q 024979 154 KALSIIRLRADLQKAIDS------ENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIF--GY-RAV 224 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe~------E~YE~AA~lRDeIr~Le~~~~AaSa~al~~~n~~v~FrVGqVvrHr~y--gY-rGV 224 (259)
....|..+.++|..+-.. +++++++++||+|++++.+..... ..+....-.+..|.||.-+.- ++ -||
T Consensus 552 ~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~l~~gr~v~~~~~~~~~~~~~ 628 (997)
T 4a4z_A 552 HEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEM---VKSPSILHILKEGRLVAFRDPNDCLKLGF 628 (997)
T ss_dssp HHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHH---TTSTTHHHHTCTTEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH---hcCHhHHhhCCCCCEEEEecCCCCeeEEE
Confidence 444566666666543222 489999999999999998875322 122222236899999965432 32 488
Q ss_pred EEccc
Q 024979 225 ICGMD 229 (259)
Q Consensus 225 IvgWD 229 (259)
|+..+
T Consensus 629 v~~~~ 633 (997)
T 4a4z_A 629 VFKVS 633 (997)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 88754
No 11
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=61.25 E-value=20 Score=29.74 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAAD 179 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~ 179 (259)
.+....+..+..+|..+++.++|+.|+.
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~ 146 (171)
T 1fpo_A 119 KRVKKMFDTRHQLMVEQLDNETWDAAAD 146 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 3455566677888889999999999983
No 12
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=57.75 E-value=11 Score=37.08 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~Aa 194 (259)
.+...++..++.+.+.++..++|+.|+.+++++..++++.+..
T Consensus 397 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 439 (758)
T 3pxi_A 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDT 439 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999998887643
No 13
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.60 E-value=2.9 Score=27.01 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=20.3
Q ss_pred cccccccHHhhHhHHHHHHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTEVEE 133 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~ih~ 133 (259)
-+.||+|...|..+.+|..--++.|.
T Consensus 5 GFiCP~C~~~l~s~~~L~~Hye~~H~ 30 (34)
T 3mjh_B 5 GFICPQCMKSLGSADELFKHYEAVHD 30 (34)
T ss_dssp EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence 37899999999998888776666553
No 14
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=52.62 E-value=30 Score=25.33 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhH
Q 024979 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196 (259)
Q Consensus 152 ~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa 196 (259)
..+..++..|+.+|...=..++|.+=|+||-++.+|.++++....
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778999999999999999999999999999999998886543
No 15
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=51.71 E-value=23 Score=27.65 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhh
Q 024979 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAAS 195 (259)
Q Consensus 148 ~~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaS 195 (259)
..+-..+..++.+|+.+|...=..++|.+=|+||-++..|.+++++..
T Consensus 29 ~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~ 76 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 76 (94)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456888999999999999999999999999999999999887544
No 16
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.05 E-value=38 Score=23.36 Aligned_cols=16 Identities=50% Similarity=0.725 Sum_probs=12.9
Q ss_pred HHHhhhHHHHHHHhhh
Q 024979 177 AADLRDQICKLEAESL 192 (259)
Q Consensus 177 AA~lRDeIr~Le~~~~ 192 (259)
-|-|||+|..||.+..
T Consensus 33 ianlrdeiarleneva 48 (52)
T 3he5_B 33 IANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3689999999987653
No 17
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=46.43 E-value=42 Score=23.23 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~Aa 194 (259)
+..|+--++.-+++|-..-.||+++.|.--+++|+.+..+-
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhh
Confidence 55678889999999999999999999999999999988753
No 18
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.37 E-value=8.3 Score=28.22 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=31.3
Q ss_pred cCceeeccccccccc---------------cccccccHHhhHhHHHHHHHHHHHHH
Q 024979 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRNKLTEVEE 133 (259)
Q Consensus 93 ~~~i~c~~cq~dl~~---------------RlgCp~cYe~F~~a~~Lr~~L~~ih~ 133 (259)
.+.-.|.+||-.+.. .+.|+.|-..|.....|..=++++|.
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~ 81 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP 81 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence 344579999998877 57899999999886677666666654
No 19
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=45.96 E-value=22 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhh
Q 024979 149 SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAAS 195 (259)
Q Consensus 149 ~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaS 195 (259)
.+-..+..++.+|+.+|...=..++|.+=|+||-++.+|.+++++..
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788899999999999999999999999999999988887544
No 20
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=43.64 E-value=25 Score=26.73 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhH
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQ 183 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDe 183 (259)
.|..+..+.+.||+.||||.--.|=++
T Consensus 3 ~I~EIEk~ID~aIE~edyE~L~~LL~k 29 (79)
T 2fzt_A 3 NIDEIERKIDEAIEKEDYETLLSLLNK 29 (79)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356778899999999999965544433
No 21
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=39.90 E-value=1.6e+02 Score=27.30 Aligned_cols=127 Identities=10% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhhhh-----hhcccCCCCchHHHHHHHHHHHHHHHHHHhhchhh----HHHHHHhhhHHHHHHHhh
Q 024979 121 AQQLRNKLTEVEEEISRQ-----LEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSEN----YALAADLRDQICKLEAES 191 (259)
Q Consensus 121 a~~Lr~~L~~ih~~~~~~-----h~GK~p~~~~~ea~d~~~~L~~Lk~~Lq~AIe~E~----YE~AA~lRDeIr~Le~~~ 191 (259)
...|...|.++|.-.... ..++.| . ...+|..-..++..+...++ ......+.+++..|++.+
T Consensus 168 ~~~ia~~La~LH~~~~~~~~L~~~~~~~p-~-------~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~e~~~L~~~l 239 (424)
T 3mes_A 168 CVEVAKNMGSLHIINSKRADFPSRFDKEP-I-------LFKRIYLWREEAKIQVSKNNFQIDKELYSKILEEIDQLEELI 239 (424)
T ss_dssp HHHHHHHHHHHHTHHHHCTTSCTTSCCSC-C-------HHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhccCccccCCCC-c-------HHHHHHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHH
Confidence 348899999999875321 013333 1 33455555555555544332 234556777888777766
Q ss_pred hhhh----Hhhh----hhccccc-----ccccCcEEEeeccCccEEEEcccccccCChhHHHHhccccCC---CCCCCCc
Q 024979 192 LAAS----ATAL----AFENARF-----AFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQ---QGPSQPF 255 (259)
Q Consensus 192 ~AaS----a~al----~~~n~~v-----~FrVGqVvrHr~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~---~gr~QPF 255 (259)
.+.. ..++ ....... -|..|-++ .-+-.-.|++||-.+..++.|.-.+...... .....||
T Consensus 240 ~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l---~~~~~~~~IDwe~a~~~~~~~Dla~~~~~~~~~y~~~~~p~ 316 (424)
T 3mes_A 240 MGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL---QTQNNIRMIDYEYSAINFAGADIANYFCEYIYDYCSEKQPY 316 (424)
T ss_dssp HTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE---ECSSCEEECCCTTCEEEEHHHHHHHHHHTTTEECCCSSTTS
T ss_pred hhhcccccccccccccccCCCCceEECCCCCcccee---cCCCcEEEEecccCCcCChHHHHHHHHHHHHhhcCCCCCCc
Confidence 5210 0000 0011111 24445555 1223345779999888888887776433322 2234566
Q ss_pred ccc
Q 024979 256 YQV 258 (259)
Q Consensus 256 YhV 258 (259)
|.+
T Consensus 317 ~~~ 319 (424)
T 3mes_A 317 FKF 319 (424)
T ss_dssp CEE
T ss_pred ccc
Confidence 544
No 22
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.38 E-value=16 Score=24.54 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=26.7
Q ss_pred ccccccccCceeeccccccccc---------------cccccccHHhhHhHHHH
Q 024979 86 SERSESANEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQL 124 (259)
Q Consensus 86 ~e~s~s~~~~i~c~~cq~dl~~---------------RlgCp~cYe~F~~a~~L 124 (259)
.+..........|.+|+..+.. .+.|+.|-..|.....|
T Consensus 9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L 62 (77)
T 2cot_A 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62 (77)
T ss_dssp CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHH
T ss_pred CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHH
Confidence 3344445566779999987764 47899999998863333
No 23
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=37.83 E-value=19 Score=24.79 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=30.9
Q ss_pred ceeeccccccccc--------------cccccccHHhhHhHHHHHHHHHHHHHh
Q 024979 95 DILFFFFQLDLAT--------------RVQCALNMEEYDIAQQLRNKLTEVEEE 134 (259)
Q Consensus 95 ~i~c~~cq~dl~~--------------RlgCp~cYe~F~~a~~Lr~~L~~ih~~ 134 (259)
...|..|+..+.. .+.|+.|-..|.....|..=|+++|+.
T Consensus 31 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~h~~ 84 (88)
T 1llm_C 31 PFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKL 84 (88)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3568888887765 467888888888877888888887765
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.56 E-value=71 Score=25.54 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
+..++.+|+.+|+.. ..|.--.-..|+++|..||.++.
T Consensus 20 Lkreie~lk~ele~l-~~E~q~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 20 LYREISGLKAQLENM-KTESQRVVLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666554 44555555566666666665554
No 25
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=36.49 E-value=1e+02 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHhhhHHHH
Q 024979 157 SIIRLRADLQKAIDSENYALAADLRDQICK 186 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~ 186 (259)
.|-+--.+|.+||+.|++| -|||++-.
T Consensus 64 rlfeemdelreavekedwe---nlrdelld 90 (114)
T 2p06_A 64 RLFEEMDELREAVEKEDWE---NLRDELLD 90 (114)
T ss_dssp HHHHHHHHHHHHHHTTCHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3333445788899999998 47888754
No 26
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=35.77 E-value=68 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 149 SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 149 ~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
+++..+-.+...++.+++..-....|+...+...+++.|+.++.
T Consensus 40 ~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~ 83 (151)
T 2pih_A 40 DKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE 83 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 34444444555555555554443334334444445555544443
No 27
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=35.32 E-value=7.9 Score=38.25 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=0.0
Q ss_pred cccccCcEEEeeccCccEEEEcccc
Q 024979 206 FAFRLGQKVNHKIFGYRAVICGMDP 230 (259)
Q Consensus 206 v~FrVGqVvrHr~ygYrGVIvgWDp 230 (259)
..|++|+.|+|+.||. |+|++.+.
T Consensus 671 ~~~~~g~~v~h~~fg~-g~v~~~~~ 694 (724)
T 1pjr_A 671 GSWKVGDRANHRKWGI-GTVVSVRG 694 (724)
T ss_dssp -------------------------
T ss_pred cccccCCEeeccCCCC-ceEEEEec
Confidence 3699999999999996 88887764
No 28
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.00 E-value=1.8e+02 Score=23.59 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhhhhhHhh--hhhccc
Q 024979 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATA--LAFENA 204 (259)
Q Consensus 155 ~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~AaSa~a--l~~~n~ 204 (259)
..-...|+..|.+..... .++-.+|+++|+.|.+++.-++++. ++..|.
T Consensus 52 NqTV~tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 52 NHTVMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 334556666666544444 5567799999999999998777765 444443
No 29
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=33.88 E-value=14 Score=28.48 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=13.9
Q ss_pred ccccccHHhhHhHHHHHHHHHHH
Q 024979 109 VQCALNMEEYDIAQQLRNKLTEV 131 (259)
Q Consensus 109 lgCp~cYe~F~~a~~Lr~~L~~i 131 (259)
++||+|+.... .|.+++++.
T Consensus 31 y~Cp~C~~~~~---~~~~l~~~~ 50 (184)
T 4dvc_A 31 FYCPHCNTFEP---IIAQLKQQL 50 (184)
T ss_dssp TTCHHHHHHHH---HHHHHHHTS
T ss_pred CCCHhHHHHhH---HHHHHHhhc
Confidence 69999987543 666666553
No 30
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=33.72 E-value=1.4e+02 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHhhHhHHHHHHHHHHHHHhhhhhhhcccC
Q 024979 115 MEEYDIAQQLRNKLTEVEEEISRQLEAKRG 144 (259)
Q Consensus 115 Ye~F~~a~~Lr~~L~~ih~~~~~~h~GK~p 144 (259)
|+..++ ++|++|.-||.=-+-.-.++-|
T Consensus 11 F~eLD~--diReLLSlvheIKID~It~n~~ 38 (69)
T 1skv_A 11 FEMLDE--DVRELLSLIHEIKIDRITGNMD 38 (69)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHH--HHHHHHHHHHHHheeeeccCCC
Confidence 445565 8999999998655445566666
No 31
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=33.68 E-value=1.7e+02 Score=22.73 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=49.8
Q ss_pred cccHHhhHhHHHHHHHHHHHHHhhhhhhhcccCCCCc--hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHH
Q 024979 112 ALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSK--SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (259)
Q Consensus 112 p~cYe~F~~a~~Lr~~L~~ih~~~~~~h~GK~p~~~~--~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~ 189 (259)
|.--+.|.. +|..-+..+..++...+.-=..++++ ..-..+...+++|.+.|+..++ +--|..+-|+-+|+.||+
T Consensus 8 peElr~Fa~--~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e-~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 8 TEEVREFVG--HLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE-AAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH-hhHHHhHHHHHHHHHhHH
Confidence 444455553 66665555555542211111111233 4445677788899999999998 777889999999999998
Q ss_pred hh
Q 024979 190 ES 191 (259)
Q Consensus 190 ~~ 191 (259)
.-
T Consensus 85 ~~ 86 (94)
T 3fx7_A 85 DY 86 (94)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 32
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=32.80 E-value=20 Score=27.92 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=16.2
Q ss_pred cccccccHHhhHhHHHHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTEV 131 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~i 131 (259)
-+.||.||.... .|.+++++.
T Consensus 36 D~~Cp~C~~~~~---~~~~~~~~~ 56 (175)
T 1z6m_A 36 NVRCPYCRKWFE---ESEELLAQS 56 (175)
T ss_dssp CTTCHHHHHHHH---HHHHHHHHH
T ss_pred CCCCcchHHHHH---HHHHHHHHH
Confidence 358999999877 677777664
No 33
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.77 E-value=19 Score=23.62 Aligned_cols=34 Identities=6% Similarity=-0.009 Sum_probs=24.4
Q ss_pred cCceeeccccccccc---------------cccccccHHhhHhHHHHHH
Q 024979 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRN 126 (259)
Q Consensus 93 ~~~i~c~~cq~dl~~---------------RlgCp~cYe~F~~a~~Lr~ 126 (259)
.....|..|+..+.. .+.|+.|-..|.....|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~ 55 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK 55 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHH
Confidence 345679999887654 4789999999986444443
No 34
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=32.51 E-value=18 Score=32.04 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=31.8
Q ss_pred ccccccccCcEEEe-------------eccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 203 NARFAFRLGQKVNH-------------KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 203 n~~v~FrVGqVvrH-------------r~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
....+|+|||.|+= -.-|-.|+|.-....+-.++. .. .. .....||+|+|
T Consensus 137 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V 199 (229)
T 3hht_B 137 SASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYGAHVFPDD----AA-HR-KGENPQYLYRV 199 (229)
T ss_dssp SSCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEE
T ss_pred CCCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEecCccCccc----cc-CC-CCCCCceeEEE
Confidence 34468999999953 234667999877666655432 11 11 13356999998
No 35
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=32.49 E-value=8.1 Score=25.67 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=16.8
Q ss_pred cccccccCcEEEeeccCccEEE
Q 024979 204 ARFAFRLGQKVNHKIFGYRAVI 225 (259)
Q Consensus 204 ~~v~FrVGqVvrHr~ygYrGVI 225 (259)
+...|.+||+|.|.-.-|+|+.
T Consensus 4 ~~~~Y~~Gd~Vty~G~~Y~c~q 25 (45)
T 1ed7_A 4 VNTAYTAGQLVTYNGKTYKCLQ 25 (45)
T ss_dssp SSEEECTTCCEEETTEEECBCS
T ss_pred CCceEcCCCEEEECCeEEEEEe
Confidence 4568999999997666666654
No 36
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.05 E-value=35 Score=22.69 Aligned_cols=33 Identities=6% Similarity=0.093 Sum_probs=22.7
Q ss_pred Cceeeccccccccc-----------------cccccccHHhhHhHHHHHH
Q 024979 94 EDILFFFFQLDLAT-----------------RVQCALNMEEYDIAQQLRN 126 (259)
Q Consensus 94 ~~i~c~~cq~dl~~-----------------RlgCp~cYe~F~~a~~Lr~ 126 (259)
....|.+|+..+.. .+.|+.|-..|.....|..
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~ 63 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHH
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHH
Confidence 34678888876544 3678999888886445544
No 37
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=31.99 E-value=19 Score=31.75 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=32.2
Q ss_pred ccccccccCcEEEe-------------eccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 203 NARFAFRLGQKVNH-------------KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 203 n~~v~FrVGqVvrH-------------r~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
....+|+|||.|+= -.-|-.|+|.-....+-.+++ ... . .....||+|+|
T Consensus 126 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~---~a~--g-~~~~p~~lY~V 188 (219)
T 3qyh_B 126 GARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDT---AAH--G-KGEHPQHVYTV 188 (219)
T ss_dssp CSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEEEECCHHH---HTT--T-SCCCCEEEEEE
T ss_pred CCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEecCccCccc---ccc--C-CCCCCceeEEE
Confidence 34468999999953 234667999877666655432 111 1 13467999998
No 38
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.13 E-value=14 Score=26.46 Aligned_cols=41 Identities=7% Similarity=0.162 Sum_probs=29.3
Q ss_pred Cceeeccccccccc---------------cccccccHHhhHhHHHHHHHHHHHHHh
Q 024979 94 EDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRNKLTEVEEE 134 (259)
Q Consensus 94 ~~i~c~~cq~dl~~---------------RlgCp~cYe~F~~a~~Lr~~L~~ih~~ 134 (259)
....|.+|+..+.. .+.|+.|-..|.....|..=+..+|.+
T Consensus 65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred CCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence 34679999887765 478999999998766666655555543
No 39
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=30.76 E-value=17 Score=27.25 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=18.9
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.|.| .+..+.||+|+..|.+
T Consensus 34 A~AGFyy~g---------------~~D~v~Cf~C~~~l~~ 58 (85)
T 3m1d_A 34 ARAGFYYTG---------------VNDKVKCFCCGLMLDN 58 (85)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEECS
T ss_pred HHCCCeEeC---------------CCCEEEeCCcCCEecC
Confidence 567887764 2567889999998765
No 40
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=30.40 E-value=1e+02 Score=21.45 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
+..|+.-++.-+++|-..-.|++.+-|-.-+++|+.+..
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 566888899999999999999999999999999988775
No 41
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=29.53 E-value=7.5 Score=24.70 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=12.0
Q ss_pred cccccccHHhhHhHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRN 126 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~ 126 (259)
.+.|+.|-..|.....|..
T Consensus 30 ~~~C~~C~~~f~~~~~l~~ 48 (60)
T 2adr_A 30 PYPCGLCNRAFTRRDLLIR 48 (60)
T ss_dssp SEECTTTCCEESSHHHHHH
T ss_pred CccCCCCCCccCCHHHHHH
Confidence 4667778777776444443
No 42
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.47 E-value=26 Score=23.22 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=22.2
Q ss_pred cCceeeccccccccc---------------cccccccHHhhHhHHHHH
Q 024979 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLR 125 (259)
Q Consensus 93 ~~~i~c~~cq~dl~~---------------RlgCp~cYe~F~~a~~Lr 125 (259)
.....|..|+..+.. .+.|+.|-..|.....|.
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~ 62 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHH
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHH
Confidence 344568888877654 467888888887644443
No 43
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=29.39 E-value=17 Score=29.93 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=18.8
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.|||.|.| .+..+.||+|+..|.+
T Consensus 58 A~AGFYYtG---------------~~D~V~Cf~C~~~L~~ 82 (136)
T 3siq_A 58 AQTGMYFTH---------------AGDKVKCFFCGVEIGS 82 (136)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEEEC
T ss_pred HHCCCeEcC---------------CCCeEEEeccCCEecC
Confidence 567777764 2467889999998875
No 44
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=29.15 E-value=18 Score=28.79 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=18.7
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.|.| .+..+.||+|+..|..
T Consensus 36 A~AGFyy~g---------------~~D~V~Cf~C~~~L~~ 60 (116)
T 1se0_A 36 AQTGMYFTH---------------AGDKVKCFFCGVEIGS 60 (116)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEEES
T ss_pred HHcCCcCcC---------------CCCEEEecCcCCEecC
Confidence 567777765 2466889999998865
No 45
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=28.96 E-value=1e+02 Score=22.71 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+..++.-+++|-..-.|++.+-|---+++|+++..
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999988875
No 46
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=28.60 E-value=15 Score=22.24 Aligned_cols=8 Identities=50% Similarity=0.733 Sum_probs=4.6
Q ss_pred ccccc-cHH
Q 024979 109 VQCAL-NME 116 (259)
Q Consensus 109 lgCp~-cYe 116 (259)
+|||+ |||
T Consensus 1 vqcphfcye 9 (26)
T 1rpq_W 1 VQCPHFCYE 9 (26)
T ss_dssp CCCCTHHHH
T ss_pred CCCCeeeee
Confidence 46765 555
No 47
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=28.30 E-value=1.3e+02 Score=26.28 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=27.8
Q ss_pred ccccccCcEEEe---------e----ccCccEEE-EcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 205 RFAFRLGQKVNH---------K----IFGYRAVI-CGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 205 ~v~FrVGqVvrH---------r----~ygYrGVI-vgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
..+|+|||.|+= | .-|-.|+| .-.-..+--++. ....+ .....||.|+|
T Consensus 120 ~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g~~~~Pd~---~a~g~--~~~~~~p~Y~V 182 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWPFPDA---IGHGR--NDAGEEPTYHV 182 (212)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSCBCCHHH---HTTTC--SCCCCBCEEEE
T ss_pred CcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEeccCccCcch---hccCc--ccCCCCCeEEE
Confidence 458999999953 2 33556999 444433333321 11111 12367899987
No 48
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=26.37 E-value=38 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.304 Sum_probs=22.4
Q ss_pred Cceeeccccccccc---------------cccccccHHhhHhHHHH
Q 024979 94 EDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQL 124 (259)
Q Consensus 94 ~~i~c~~cq~dl~~---------------RlgCp~cYe~F~~a~~L 124 (259)
....|.+|+..+.. .+.|+.|-..|.....|
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 61 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHH
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHH
Confidence 44669999887765 47899998888863333
No 49
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=26.35 E-value=26 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=33.1
Q ss_pred hcccccccccCcEEEe-------------eccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 201 FENARFAFRLGQKVNH-------------KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 201 ~~n~~v~FrVGqVvrH-------------r~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
......+|.|||.|+= -.-|..|+|.-.-..+-.++.= . .. .....||+|+|
T Consensus 30 ~~~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G~~v~Pd~~---A--~G-~ge~p~~lY~V 94 (126)
T 2zzd_A 30 GMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDE---A--FG-NEENVEWFYSI 94 (126)
T ss_dssp TTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEEEECCHHHH---T--TT-CCSCCEEEEEE
T ss_pred CCCCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEecccCCcchh---c--cC-CCCCcceeEEE
Confidence 3344568999999963 2346679997766655554421 1 11 24567999987
No 50
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=26.20 E-value=28 Score=27.46 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=14.8
Q ss_pred cccccccHHhhHhHHHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTE 130 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~ 130 (259)
-+.||.||..+. .|.+.|.+
T Consensus 20 D~~Cp~C~~~~~---~l~~~l~~ 39 (186)
T 3bci_A 20 DYKCPYCKELDE---KVMPKLRK 39 (186)
T ss_dssp CTTCHHHHHHHH---HHHHHHHH
T ss_pred CCCChhHHHHHH---HHHHHHHH
Confidence 468999999887 56665643
No 51
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=26.13 E-value=22 Score=28.72 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=19.3
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.+.|. +..+.||+|+..|.+
T Consensus 48 A~AGFyYtg~---------------~D~V~Cf~C~~~L~~ 72 (124)
T 1jd5_A 48 AEAGFFYTGV---------------GDRVRCFSCGGGLMD 72 (124)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEEEC
T ss_pred HHcCCCCcCC---------------CCEEEecCCCCEecC
Confidence 5788888652 467889999998865
No 52
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=26.12 E-value=18 Score=27.62 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.9
Q ss_pred cccccccccHHhhHhHHHHHH
Q 024979 106 ATRVQCALNMEEYDIAQQLRN 126 (259)
Q Consensus 106 ~~RlgCp~cYe~F~~a~~Lr~ 126 (259)
-++||||-|.+.|.+ |.|.+
T Consensus 13 Lt~LGc~~~Id~F~~-qgl~~ 32 (80)
T 1dxs_A 13 LTGLGCPNCIEYFTS-QGLQS 32 (80)
T ss_dssp HHHTTCTTSHHHHHT-TTCCC
T ss_pred HHhcCchHHHHHHHH-cCccc
Confidence 469999999999997 54443
No 53
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=25.15 E-value=24 Score=21.91 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=4.9
Q ss_pred cccccHHhhHh
Q 024979 110 QCALNMEEYDI 120 (259)
Q Consensus 110 gCp~cYe~F~~ 120 (259)
.|+.|-..|..
T Consensus 6 ~C~~C~~~f~~ 16 (57)
T 3uk3_C 6 ECSYCGKFFRS 16 (57)
T ss_dssp BCTTTCCBCSC
T ss_pred cCCCCcchhCC
Confidence 34444444443
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.90 E-value=1.8e+02 Score=29.13 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHH--HHhhhHHHHHHHhhhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALA--ADLRDQICKLEAESLA 193 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~A--A~lRDeIr~Le~~~~A 193 (259)
++..+|+.||.+++.-|..-.--++ +.+|-+|+.||..+.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555522221111 1445555566555543
No 55
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=24.82 E-value=25 Score=26.88 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=18.3
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.+.|. +..+.||+|+..|.+
T Consensus 43 A~AGFyytg~---------------~D~V~Cf~C~~~l~~ 67 (94)
T 2poi_A 43 ARAGFLYTGE---------------GDTVRCFSCHAAVDR 67 (94)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEECC
T ss_pred HHcCCCCcCC---------------CCEEEcccCCCEeCC
Confidence 5677777652 456889999998755
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.51 E-value=90 Score=28.14 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhchhhHHHH--HHhhhHHHHHHHhhhh
Q 024979 157 SIIRLRADLQKAIDSENYALA--ADLRDQICKLEAESLA 193 (259)
Q Consensus 157 ~L~~Lk~~Lq~AIe~E~YE~A--A~lRDeIr~Le~~~~A 193 (259)
.+..|+.+++.+-...+|=.+ -.+|++|..|+++++.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788777777775333 3788899999888874
No 57
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=23.85 E-value=26 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.+.| .+..+.||+|+..|.+
T Consensus 34 A~AGFyy~g---------------~~D~v~Cf~C~~~l~~ 58 (95)
T 3hl5_A 34 ARAGFYALG---------------EGDKVKCFHCGGGLTD 58 (95)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEECC
T ss_pred HhCCCeEcC---------------CCCeEEecCCCCCccC
Confidence 567777754 2567889999998865
No 58
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=23.82 E-value=28 Score=28.29 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=18.7
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.|||.|.|-+ .....+.||+|+..|.+
T Consensus 39 A~AGFyy~g~~------------~~~D~V~Cf~C~~~L~~ 66 (142)
T 2qfa_A 39 AEAGFIHCPTE------------NEPDLAQCFFCFKELEG 66 (142)
T ss_dssp HHTTEEECCBT------------TBTTCEEETTTCCEECC
T ss_pred HHcCCCcCCCC------------CCCCEEEcCCCCCEecc
Confidence 56777775421 12356889999998865
No 59
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.64 E-value=1.3e+02 Score=23.79 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhc--hhhHHHHH-----HhhhHHHHHHHhhhhhhHhhhhhcc
Q 024979 158 IIRLRADLQKAID--SENYALAA-----DLRDQICKLEAESLAASATALAFEN 203 (259)
Q Consensus 158 L~~Lk~~Lq~AIe--~E~YE~AA-----~lRDeIr~Le~~~~AaSa~al~~~n 203 (259)
|+.--.+|++|.+ +.+||.-+ .|..+|+.|+.+..+.-+++++...
T Consensus 18 Le~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~q 70 (101)
T 4aj5_1 18 LDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQ 70 (101)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333445566666 44577543 4566788888777766666655443
No 60
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=23.47 E-value=26 Score=28.01 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.4
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.|.|. ...+.||+|+..|.+
T Consensus 48 A~AGFyy~g~---------------~D~V~Cf~C~~~L~~ 72 (121)
T 1g73_C 48 ARAGFYALGE---------------GDKVKCFHCGGGLTD 72 (121)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEEES
T ss_pred HHcCCCCcCC---------------CCEEEcCcCCCCcCC
Confidence 5677777642 346889999998865
No 61
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=23.39 E-value=27 Score=27.68 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=18.3
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 024979 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (259)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~~~~i~c~~cq~dl~~ 107 (259)
+.||+.|.|. +..+.||+|+..|.+
T Consensus 60 A~AGFyYtg~---------------~D~V~Cf~C~~~L~~ 84 (111)
T 2qra_D 60 ARAGFLYTGE---------------GDTVRCFSCHAAVDR 84 (111)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEECC
T ss_pred HHcCCCCcCC---------------CCEEEcccCCCEeCC
Confidence 5677777652 456889999998755
No 62
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=22.68 E-value=26 Score=28.66 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=17.0
Q ss_pred cccccccHHhhHhHHHHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTEV 131 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~i 131 (259)
-++||+|...+. .+.++|++-
T Consensus 23 D~~Cp~C~~~~~---~~~~~l~~~ 43 (182)
T 3gn3_A 23 EPTCPFSVKAFF---KLDDLLAQA 43 (182)
T ss_dssp CTTCHHHHHHHT---THHHHHHHH
T ss_pred CCCCHhHHHHHH---HHHHHHHHh
Confidence 579999999988 677877764
No 63
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=21.60 E-value=16 Score=31.86 Aligned_cols=48 Identities=33% Similarity=0.505 Sum_probs=29.5
Q ss_pred ccccccCcEEEe-------------eccCccEEEEcccccccCChhHHHHhccccCCCCCCCCcccc
Q 024979 205 RFAFRLGQKVNH-------------KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQV 258 (259)
Q Consensus 205 ~v~FrVGqVvrH-------------r~ygYrGVIvgWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhV 258 (259)
..+|+|||.|+= -.-|-.|+|+-....+--++. . ... .....||.|.|
T Consensus 116 ~~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g~~v~Pd~----~-A~g-~ge~p~~lY~V 176 (206)
T 4fm4_B 116 EGGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISPAYPYPDA----A-AHG-EYGFSEPTYDV 176 (206)
T ss_dssp TTCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECCCEECHHH----H-TTT-CCSCEECEEEE
T ss_pred CCCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEecCcCCccc----c-cCC-CCCCcceeEEE
Confidence 347999999963 223567999876655554442 1 111 12345899987
No 64
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=21.52 E-value=32 Score=26.96 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=14.4
Q ss_pred ccccccHHhhHhHHHHHHHHHH
Q 024979 109 VQCALNMEEYDIAQQLRNKLTE 130 (259)
Q Consensus 109 lgCp~cYe~F~~a~~Lr~~L~~ 130 (259)
+.||.||.... .|.+++++
T Consensus 35 ~~Cp~C~~~~~---~l~~l~~~ 53 (193)
T 2rem_A 35 YTCPHCAHFDS---KLQAWGAR 53 (193)
T ss_dssp TTCHHHHHHHH---HHHHHHHT
T ss_pred CCChhHhhhhH---HHHHHHHh
Confidence 68999998877 56665554
No 65
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.42 E-value=1e+02 Score=20.57 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhhhHHHHH
Q 024979 156 LSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (259)
Q Consensus 156 ~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~L 187 (259)
..|+.++++++-|-.+-|||.+-.|-.+++.|
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 45667788888888888888877766666543
No 66
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.40 E-value=2e+02 Score=22.05 Aligned_cols=32 Identities=41% Similarity=0.450 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHh
Q 024979 149 SEAQDKALSIIRLRADLQKAIDSENYALAADL 180 (259)
Q Consensus 149 ~ea~d~~~~L~~Lk~~Lq~AIe~E~YE~AA~l 180 (259)
.+.+|++.-+..|..+|+.|+++-+..+-|.-
T Consensus 29 q~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~ 60 (90)
T 4b6x_A 29 QEIEDKQLMVNNLTDELQDAIDEANPAEIANT 60 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHhH
Confidence 34467888888999999999999988766643
No 67
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.07 E-value=1.8e+02 Score=21.27 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=24.0
Q ss_pred HHHHHHHHHH-hhchhhHHHHHHhhhHHHHHHHhhhhh
Q 024979 158 IIRLRADLQK-AIDSENYALAADLRDQICKLEAESLAA 194 (259)
Q Consensus 158 L~~Lk~~Lq~-AIe~E~YE~AA~lRDeIr~Le~~~~Aa 194 (259)
|..|..+|.. .+...+|+..+.+-.++..++.+++.+
T Consensus 38 i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 38 LEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 233457888888888888888887754
No 68
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=20.59 E-value=43 Score=25.88 Aligned_cols=20 Identities=5% Similarity=0.212 Sum_probs=15.1
Q ss_pred cccccccHHhhHhHHHHHHHHHH
Q 024979 108 RVQCALNMEEYDIAQQLRNKLTE 130 (259)
Q Consensus 108 RlgCp~cYe~F~~a~~Lr~~L~~ 130 (259)
-..||.|+.... .|.+++++
T Consensus 31 d~~Cp~C~~~~~---~l~~l~~~ 50 (175)
T 3gyk_A 31 DYNCPYCRRAMA---EVQGLVDA 50 (175)
T ss_dssp CTTCHHHHHHHH---HHHHHHHH
T ss_pred CCCCccHHHHHH---HHHHHHHh
Confidence 358999999876 57766654
No 69
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=20.55 E-value=33 Score=26.12 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.5
Q ss_pred Cceeeccccccccc
Q 024979 94 EDILFFFFQLDLAT 107 (259)
Q Consensus 94 ~~i~c~~cq~dl~~ 107 (259)
..+.||+|+..|..
T Consensus 47 D~v~Cf~C~~~l~~ 60 (97)
T 3d9t_A 47 DDVKCFCCDGGLRC 60 (97)
T ss_dssp TCEEETTTCCEEEC
T ss_pred CEEEecCcCCEecC
Confidence 46889999998865
No 70
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=20.49 E-value=35 Score=26.64 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=9.5
Q ss_pred ccccccHHhhH
Q 024979 109 VQCALNMEEYD 119 (259)
Q Consensus 109 lgCp~cYe~F~ 119 (259)
+.||.||....
T Consensus 27 ~~CP~C~~~~~ 37 (195)
T 3c7m_A 27 YACPFCYKYDK 37 (195)
T ss_dssp TTCHHHHHHHH
T ss_pred CcCcchhhCcH
Confidence 79999998766
No 71
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=20.30 E-value=1e+02 Score=22.43 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHH------HHHHhhhHHHH
Q 024979 149 SEAQDKALSIIRLRADLQKAIDSENYA------LAADLRDQICK 186 (259)
Q Consensus 149 ~ea~d~~~~L~~Lk~~Lq~AIe~E~YE------~AA~lRDeIr~ 186 (259)
.+-..+..+|.....+||..--.-+.| +||.+||++..
T Consensus 26 aelaafekeiaafeselqaykgkgnpevealrkeaaairdelqa 69 (73)
T 2a3d_A 26 AELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQA 69 (73)
T ss_dssp GTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 344457778888888888765544433 78889998864
No 72
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=20.30 E-value=66 Score=18.94 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=13.7
Q ss_pred hhhHHHHHHhhhHHHHHH
Q 024979 171 SENYALAADLRDQICKLE 188 (259)
Q Consensus 171 ~E~YE~AA~lRDeIr~Le 188 (259)
...|.+||-||.+..+-|
T Consensus 3 mnrydqaatlrakmekre 20 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRE 20 (26)
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 356999999998876544
No 73
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=20.15 E-value=1.9e+02 Score=20.75 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHhhhHHHHHHHhhh
Q 024979 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (259)
Q Consensus 153 d~~~~L~~Lk~~Lq~AIe~E~YE~AA~lRDeIr~Le~~~~ 192 (259)
-+..|+..++.-+++|-..=.|++.+-|-.-+++|+.+..
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 3666888899999999999999999999999999988775
No 74
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.13 E-value=86 Score=31.31 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhchhh--HHHHHHhhhHHHHHHHhh
Q 024979 154 KALSIIRLRADLQKAIDSEN--YALAADLRDQICKLEAES 191 (259)
Q Consensus 154 ~~~~L~~Lk~~Lq~AIe~E~--YE~AA~lRDeIr~Le~~~ 191 (259)
.....+.|+.++.++.+.++ +|.+-+||.+|..|+.++
T Consensus 87 ~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 87 TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 33344446666666665555 344445555555555444
Done!