BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024980
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 92.8 bits (229), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 3/58 (5%)
Query: 195 DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
D P+DPNEPTYC+CHQVS+G+MI CDN +C EWFH+ACVGLT T+ +GKW+CP C
Sbjct: 8 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLT--TKPRGKWFCPRC 62
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 51/64 (79%), Gaps = 4/64 (6%)
Query: 191 PMDV-DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYC 249
P DV D P+DPNEPTYC+CHQVS+G+MI CDN +C EWFH+ACVGLT T+ +GKW+C
Sbjct: 23 PSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLT--TKPRGKWFC 79
Query: 250 PTCR 253
P C
Sbjct: 80 PRCS 83
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Query: 194 VDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
+D P+DPNEPTYC+CHQVS+G+MI CDN +C EWFH+ACVGLT T+ +GKW+CP C
Sbjct: 1 MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLT--TKPRGKWFCPRC 56
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Query: 194 VDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
+D P+DPNEPTYC+CHQVS+G+MI CDN +C EWFH+ACVGLT T+ +GKW+CP C
Sbjct: 1 MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLT--TKPRGKWFCPRC 56
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Query: 194 VDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
+D P+DPNEPTYC+CHQVS+G+MI CD+ +C EWFH+ACVGLT T+ +GKW+CP C
Sbjct: 1 MDMPVDPNEPTYCLCHQVSYGEMIGCDDPDCS-IEWFHFACVGLT--TKPRGKWFCPRC 56
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 47/59 (79%), Gaps = 3/59 (5%)
Query: 195 DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCR 253
D PIDPNEPTYC+C+QVS+G+MI CDN+ C EWFH++CVGL + KGKWYCP CR
Sbjct: 3 DLPIDPNEPTYCLCNQVSYGEMIGCDNDECP-IEWFHFSCVGLN--HKPKGKWYCPKCR 58
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 3/56 (5%)
Query: 198 IDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCR 253
IDPNEPTYC+C+QVS+G+MI CDNE C EWFH++CV LT + KGKWYCP CR
Sbjct: 11 IDPNEPTYCLCNQVSYGEMIGCDNEQCP-IEWFHFSCVSLT--YKPKGKWYCPKCR 63
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 3/56 (5%)
Query: 198 IDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCR 253
IDPNEPTYC+C+QVS+G+MI CDNE C EWFH++CV LT + KGKWYCP CR
Sbjct: 6 IDPNEPTYCLCNQVSYGEMIGCDNEQCP-IEWFHFSCVSLT--YKPKGKWYCPKCR 58
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 43/52 (82%), Gaps = 3/52 (5%)
Query: 201 NEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
NEPTYC+CHQVS+G+MI CDN +C EWFH+ACVGLT T+ +GKW+CP C
Sbjct: 3 NEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLT--TKPRGKWFCPRC 51
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 42/52 (80%), Gaps = 3/52 (5%)
Query: 201 NEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
NEPTYC+CHQVS+G+MI CDN +C EWFH+ACV LT T+ KGKW+CP C
Sbjct: 7 NEPTYCLCHQVSYGEMIGCDNPDCP-IEWFHFACVDLT--TKPKGKWFCPRC 55
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 72.8 bits (177), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 3/48 (6%)
Query: 205 YCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
YC+C+QVS+G+M+ CDN++C EWFHY CVGLT KGKWYCP C
Sbjct: 8 YCICNQVSYGEMVGCDNQDCP-IEWFHYGCVGLTEAP--KGKWYCPQC 52
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 180 PPGSQ-KREFTTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLT 238
P GS EF DV + + E YC C VS+G M+ACDN C EWFHY CVGL
Sbjct: 2 PLGSHMASEFINQGDVTEGNNNQEEVYCFCRNVSYGPMVACDNPACP-FEWFHYGCVGLK 60
Query: 239 PETRFKGKWYC 249
KGKWYC
Sbjct: 61 QAP--KGKWYC 69
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins
Length = 104
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 6 TGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNG 65
G Y++ YL+ LP ELQR R+LD+R+ + + + L + +
Sbjct: 2 AGXYLEHYLDSIENLPFELQRNFQLXRDLDQRTEDLKAEIDK-----LATEYXSSARSLS 56
Query: 66 NEEDEAIEKMRKEIEVNQDNALSLCTE----KVLLARQAYDIIDSHIKRLDEDL 115
+EE A+ K +E A C E KV LA Q Y+ +D HI+RLD DL
Sbjct: 57 SEEKLALLKQIQE-------AYGKCKEFGDDKVQLAXQTYEXVDKHIRRLDTDL 103
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 35.0 bits (79), Expect = 0.042, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 216 MIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252
MI CD+ + +W+H+ CVG+ + +W+CP C
Sbjct: 33 MIGCDDCD----DWYHWPCVGIMAAPPEEMQWFCPKC 65
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 34.3 bits (77), Expect = 0.065, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 203 PTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFK-GKWYCPTC 252
P YC+C Q + + CQ +WFH +CVG+ E ++CP C
Sbjct: 12 PVYCLCRQPYNVNHFMIECGLCQ--DWFHGSCVGIEEENAVDIDIYHCPDC 60
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 34.3 bits (77), Expect = 0.075, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 199 DPNEPTYCVCHQVSFGD-MIACDNENCQGGEWFHYACVGLTPE-----TRFKGKWYCPTC 252
DPN YC+C Q MI CD C+ EWFH CVG++ R + CP C
Sbjct: 13 DPN-ALYCICRQPHNNRFMICCDR--CE--EWFHGDCVGISEARGRLLERNGEDYICPNC 67
Query: 253 RLL 255
+L
Sbjct: 68 TIL 70
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 203 PTYCVC---HQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWY-CPTCRLL 255
P YC+C + V+ MI CD CQ +WFH +CVG+ E Y CP C +L
Sbjct: 5 PVYCLCRLPYDVT-RFMIECDM--CQ--DWFHGSCVGVEEEKAADIDLYHCPNCEVL 56
>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
Complex With H3(1-9)k4me3
pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
K4me3 Peptide
Length = 52
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 224 CQGG--EWFHYACVGLTPETRFKGKWYCPTC 252
C GG EWFH CVG++PE + C C
Sbjct: 21 CDGGCDEWFHQVCVGVSPEMAENEDYICINC 51
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 30.4 bits (67), Expect = 0.98, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 203 PTYCVCHQ----VSFGDMIACDNENCQGGEWFHYACVGLTPETRFK-GKWYCPTC 252
P YCVC F MI CD C+ +WFH +CVG+ E ++CP C
Sbjct: 10 PVYCVCRLPYDVTRF--MIECDA--CK--DWFHGSCVGVEEEEAPDIDIYHCPNC 58
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 204 TYCVCHQVSFGD--MIACDNENCQGGEWFHYACVGLTPETRFKGKWY-CPTCRLL 255
YCVC Q + MI CD C+ +WFH +CVG+ Y CP C +L
Sbjct: 38 VYCVCRQPYDVNRFMIECD--ICK--DWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 217 IACDNENCQGGEWFHYACVGLTP-ETRFKGKWYCPTC 252
I CD+ CQ W+H+ C GL E K++CP C
Sbjct: 59 IGCDS--CQ--TWYHFLCSGLEQFEYYLYEKFFCPKC 91
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 209 HQVSFGDMIACDNENCQGGEWFHYACVGL---TPETRFKGKW 247
H +FG M CD +N W Y L P++R G+W
Sbjct: 145 HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEW 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,268,229
Number of Sequences: 62578
Number of extensions: 271327
Number of successful extensions: 661
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 45
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)