Query 024980
Match_columns 259
No_of_seqs 191 out of 1174
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4afl_A P29ING4, inhibitor of g 99.9 5.5E-27 1.9E-31 181.0 12.6 102 6-116 2-104 (104)
2 2g6q_A Inhibitor of growth pro 99.9 5.4E-23 1.9E-27 144.1 1.7 58 195-255 3-60 (62)
3 1wen_A Inhibitor of growth fam 99.9 4.4E-22 1.5E-26 143.1 6.2 61 194-257 7-67 (71)
4 1weu_A Inhibitor of growth fam 99.9 9.8E-22 3.4E-26 147.4 7.6 62 193-257 26-87 (91)
5 3c6w_A P28ING5, inhibitor of g 99.8 2.6E-22 8.8E-27 139.3 1.6 56 197-255 3-58 (59)
6 2jmi_A Protein YNG1, ING1 homo 99.8 1.2E-21 4.1E-26 146.7 3.0 57 195-254 18-75 (90)
7 2vnf_A ING 4, P29ING4, inhibit 99.8 8.5E-22 2.9E-26 137.2 1.5 58 195-255 2-59 (60)
8 1x4i_A Inhibitor of growth pro 99.8 7.4E-21 2.5E-25 136.3 2.2 54 199-255 2-55 (70)
9 1wew_A DNA-binding family prot 99.7 6E-19 2E-23 129.1 4.2 62 194-257 7-74 (78)
10 2rsd_A E3 SUMO-protein ligase 99.7 3.2E-17 1.1E-21 116.8 3.3 58 196-255 3-65 (68)
11 3o70_A PHD finger protein 13; 99.6 5.4E-16 1.9E-20 110.4 3.4 53 198-255 14-67 (68)
12 3o7a_A PHD finger protein 13 v 99.6 3.8E-16 1.3E-20 105.4 2.1 49 201-254 2-51 (52)
13 1we9_A PHD finger family prote 99.6 1E-15 3.5E-20 107.6 3.3 55 200-258 3-61 (64)
14 1wee_A PHD finger family prote 99.5 1.6E-15 5.5E-20 109.1 2.3 56 198-257 11-68 (72)
15 3kqi_A GRC5, PHD finger protei 99.5 7.3E-16 2.5E-20 111.8 0.4 56 198-257 5-63 (75)
16 1wep_A PHF8; structural genomi 99.5 1.3E-15 4.6E-20 111.4 1.6 53 201-257 10-65 (79)
17 1wem_A Death associated transc 99.5 2.9E-15 1E-19 108.8 1.1 55 198-257 12-72 (76)
18 2k16_A Transcription initiatio 99.5 5.4E-15 1.9E-19 107.0 1.6 55 198-256 13-69 (75)
19 2kgg_A Histone demethylase jar 99.4 2.1E-14 7.1E-19 96.8 -0.0 46 205-253 5-52 (52)
20 2lv9_A Histone-lysine N-methyl 99.3 1.3E-12 4.3E-17 99.4 5.3 53 198-255 23-76 (98)
21 2ri7_A Nucleosome-remodeling f 99.3 8.5E-14 2.9E-18 116.0 -1.4 55 197-255 2-59 (174)
22 2xb1_A Pygopus homolog 2, B-ce 99.3 3.6E-13 1.2E-17 103.7 2.1 49 204-257 4-63 (105)
23 2vpb_A Hpygo1, pygopus homolog 99.3 6.3E-13 2.2E-17 93.6 0.8 49 203-254 9-65 (65)
24 3kv5_D JMJC domain-containing 99.3 3.4E-13 1.2E-17 129.0 -0.8 56 198-257 32-90 (488)
25 4gne_A Histone-lysine N-methyl 99.2 4.5E-12 1.5E-16 97.7 3.5 50 199-253 11-60 (107)
26 2l5u_A Chromodomain-helicase-D 99.1 2E-11 7E-16 84.8 3.7 51 200-259 8-61 (61)
27 2yql_A PHD finger protein 21A; 99.1 3.6E-11 1.2E-15 82.1 3.3 46 202-255 8-56 (56)
28 1xwh_A Autoimmune regulator; P 99.0 8.3E-11 2.8E-15 82.9 3.0 47 202-256 7-56 (66)
29 1f62_A Transcription factor WS 99.0 6.8E-11 2.3E-15 79.0 2.4 43 207-255 5-50 (51)
30 2l43_A N-teminal domain from h 99.0 7.2E-11 2.5E-15 87.9 1.4 51 201-257 24-77 (88)
31 2puy_A PHD finger protein 21A; 99.0 1.9E-10 6.5E-15 79.5 2.6 44 204-255 6-52 (60)
32 2ku3_A Bromodomain-containing 98.9 2.9E-10 9.8E-15 81.3 2.2 49 201-255 15-66 (71)
33 1mm2_A MI2-beta; PHD, zinc fin 98.9 6.4E-10 2.2E-14 77.1 3.9 46 203-256 9-57 (61)
34 2e6r_A Jumonji/ARID domain-con 98.9 5.1E-10 1.7E-14 84.0 2.7 46 203-254 16-65 (92)
35 2lri_C Autoimmune regulator; Z 98.8 3.2E-09 1.1E-13 74.8 3.8 43 205-255 14-59 (66)
36 3asl_A E3 ubiquitin-protein li 98.8 3.2E-09 1.1E-13 75.6 3.9 42 208-255 24-69 (70)
37 2yt5_A Metal-response element- 98.8 3.4E-09 1.2E-13 74.4 3.5 51 201-257 4-63 (66)
38 3pur_A Lysine-specific demethy 98.8 1.4E-09 4.7E-14 104.0 1.2 40 214-257 56-96 (528)
39 2e6s_A E3 ubiquitin-protein li 98.7 7.5E-09 2.6E-13 75.0 4.4 42 207-254 31-76 (77)
40 1fp0_A KAP-1 corepressor; PHD 98.6 2.9E-08 1E-12 73.5 5.4 49 202-258 24-75 (88)
41 3shb_A E3 ubiquitin-protein li 98.5 6.5E-08 2.2E-12 70.0 2.8 41 208-254 32-76 (77)
42 2kwj_A Zinc finger protein DPF 98.4 5.4E-08 1.9E-12 75.6 2.2 43 207-255 63-108 (114)
43 3ask_A E3 ubiquitin-protein li 98.4 8.5E-08 2.9E-12 82.7 3.0 43 207-255 179-225 (226)
44 3lqh_A Histone-lysine N-methyl 98.4 5.5E-08 1.9E-12 81.6 0.7 40 214-257 19-65 (183)
45 3v43_A Histone acetyltransfera 98.4 2E-07 6.9E-12 72.1 3.8 43 207-255 66-112 (112)
46 1wev_A Riken cDNA 1110020M19; 98.4 7.3E-08 2.5E-12 71.5 0.8 49 202-256 15-73 (88)
47 2ysm_A Myeloid/lymphoid or mix 98.2 5.1E-07 1.8E-11 69.5 2.4 43 207-255 59-104 (111)
48 2ysm_A Myeloid/lymphoid or mix 97.9 8.5E-06 2.9E-10 62.6 4.2 46 204-253 8-55 (111)
49 2kwj_A Zinc finger protein DPF 97.8 3.7E-06 1.2E-10 65.1 0.8 34 214-253 21-59 (114)
50 3v43_A Histone acetyltransfera 97.7 5.2E-06 1.8E-10 64.0 0.7 46 204-253 6-62 (112)
51 3rsn_A SET1/ASH2 histone methy 97.6 3.1E-05 1.1E-09 64.2 3.9 50 202-255 4-59 (177)
52 2lbm_A Transcriptional regulat 97.5 2.6E-05 8.8E-10 62.6 1.1 45 203-255 63-117 (142)
53 3ql9_A Transcriptional regulat 97.2 4.2E-05 1.4E-09 60.4 -0.7 47 202-256 56-112 (129)
54 4bbq_A Lysine-specific demethy 97.2 0.00021 7.1E-09 55.0 3.2 37 215-255 74-114 (117)
55 3kv4_A PHD finger protein 8; e 97.1 2.1E-05 7.1E-10 74.3 -3.6 53 201-257 3-58 (447)
56 3a1b_A DNA (cytosine-5)-methyl 94.8 0.0077 2.6E-07 48.9 1.0 53 200-256 76-135 (159)
57 2pv0_B DNA (cytosine-5)-methyl 93.7 0.016 5.3E-07 53.6 0.8 52 201-256 91-149 (386)
58 2lq6_A Bromodomain-containing 93.5 0.048 1.6E-06 39.8 3.0 36 197-234 12-47 (87)
59 1wil_A KIAA1045 protein; ring 91.6 0.12 4E-06 37.4 2.9 47 205-255 17-76 (89)
60 1vyx_A ORF K3, K3RING; zinc-bi 89.1 0.035 1.2E-06 37.5 -1.6 51 202-257 5-58 (60)
61 2xzr_A Immunoglobulin-binding 86.1 8.4 0.00029 28.3 13.9 96 9-113 7-104 (114)
62 1m1j_C Fibrinogen gamma chain; 84.2 21 0.00071 33.0 13.6 102 10-119 25-132 (409)
63 3ghg_A Fibrinogen alpha chain; 75.8 29 0.00098 33.1 11.5 18 99-116 138-155 (562)
64 1weq_A PHD finger protein 7; s 71.1 5.1 0.00017 28.9 4.2 49 203-257 26-81 (85)
65 2e61_A Zinc finger CW-type PWW 70.0 2.9 9.8E-05 29.0 2.5 34 214-251 16-49 (69)
66 3nmd_A CGMP dependent protein 68.6 16 0.00056 25.3 6.2 33 17-49 21-53 (72)
67 3k1l_B Fancl; UBC, ring, RWD, 65.0 2.1 7.1E-05 39.1 1.3 51 203-255 308-370 (381)
68 3ghg_A Fibrinogen alpha chain; 61.1 28 0.00096 33.1 8.1 50 74-123 106-155 (562)
69 2ke4_A CDC42-interacting prote 58.9 32 0.0011 25.2 6.7 26 16-41 7-34 (98)
70 1deq_A Fibrinogen (alpha chain 56.8 1.2E+02 0.004 27.7 11.5 25 28-52 101-125 (390)
71 4fla_A Regulation of nuclear P 55.1 52 0.0018 26.0 7.8 43 77-119 99-141 (152)
72 4gne_A Histone-lysine N-methyl 54.1 9.1 0.00031 28.6 3.0 44 200-249 50-98 (107)
73 1iym_A EL5; ring-H2 finger, ub 52.6 6.2 0.00021 24.7 1.6 42 207-256 10-53 (55)
74 2l5g_A GPS2 protein, G protein 52.5 29 0.00099 20.9 4.4 28 71-98 9-36 (38)
75 2ysl_A Tripartite motif-contai 47.0 17 0.00058 24.0 3.3 48 202-256 19-67 (73)
76 2ect_A Ring finger protein 126 46.8 16 0.00056 24.5 3.2 46 203-256 15-62 (78)
77 3nmd_A CGMP dependent protein 45.9 72 0.0025 22.1 7.2 41 83-123 24-64 (72)
78 2kiz_A E3 ubiquitin-protein li 45.3 6.5 0.00022 25.9 0.9 46 203-256 14-61 (69)
79 2lk0_A RNA-binding protein 5; 43.4 9.1 0.00031 22.1 1.2 12 244-255 3-14 (32)
80 1x4j_A Ring finger protein 38; 41.5 4.6 0.00016 27.3 -0.4 47 203-257 23-71 (75)
81 4a0k_B E3 ubiquitin-protein li 40.1 7.7 0.00026 29.4 0.6 27 223-255 83-109 (117)
82 3nw0_A Non-structural maintena 40.0 8.9 0.0003 32.7 1.1 45 203-255 180-226 (238)
83 1deq_A Fibrinogen (alpha chain 39.4 2.2E+02 0.0076 25.9 12.9 42 74-115 113-157 (390)
84 2jwo_A RAG-2, V(D)J recombinat 37.7 8.5 0.00029 27.1 0.5 34 215-251 37-75 (82)
85 1bor_A Transcription factor PM 37.5 31 0.0011 21.8 3.2 41 202-256 5-47 (56)
86 2yur_A Retinoblastoma-binding 37.3 6.8 0.00023 26.5 -0.1 46 203-255 15-61 (74)
87 2ecw_A Tripartite motif-contai 36.5 20 0.00069 24.1 2.3 49 202-256 18-69 (85)
88 2efr_A General control protein 36.4 1.6E+02 0.0054 23.3 14.7 90 20-123 26-115 (155)
89 2d8s_A Cellular modulator of i 36.1 8.3 0.00028 27.0 0.2 48 205-257 17-69 (80)
90 1t1h_A Gspef-atpub14, armadill 35.8 15 0.0005 24.8 1.5 46 202-256 7-53 (78)
91 2a20_A Regulating synaptic mem 34.6 13 0.00046 24.8 1.0 47 205-255 11-60 (62)
92 2d8t_A Dactylidin, ring finger 34.2 27 0.00092 23.0 2.6 44 203-256 15-59 (71)
93 2yuu_A NPKC-delta, protein kin 33.7 26 0.00091 24.4 2.6 33 202-238 27-63 (83)
94 2enz_A NPKC-theta, protein kin 33.7 34 0.0012 22.6 3.1 33 202-238 22-58 (65)
95 2ckl_B Ubiquitin ligase protei 33.5 6.9 0.00024 30.8 -0.6 46 203-256 54-100 (165)
96 2wuj_A Septum site-determining 32.6 42 0.0014 21.9 3.3 29 10-41 25-53 (57)
97 2enn_A NPKC-theta, protein kin 32.6 25 0.00084 24.3 2.2 34 201-238 32-69 (77)
98 1ptq_A Protein kinase C delta 32.5 22 0.00075 22.0 1.8 33 202-238 10-46 (50)
99 3oja_A Leucine-rich immune mol 32.4 2.9E+02 0.0098 25.1 11.6 28 73-100 459-486 (487)
100 2l0b_A E3 ubiquitin-protein li 32.4 9.5 0.00033 26.9 0.0 46 203-256 40-87 (91)
101 1nfn_A Apolipoprotein E3; lipi 32.3 2E+02 0.0068 23.2 10.0 43 6-48 29-74 (191)
102 2yf2_A C4B binding protein; im 31.9 1.1E+02 0.0036 20.0 5.8 36 18-53 23-58 (65)
103 3oja_B Anopheles plasmodium-re 31.4 3.2E+02 0.011 25.3 14.0 30 20-49 454-483 (597)
104 1fxk_C Protein (prefoldin); ar 31.2 1.6E+02 0.0053 22.0 6.9 41 83-123 86-126 (133)
105 2k1p_A Zinc finger RAN-binding 31.0 16 0.00053 21.3 0.8 12 244-255 4-15 (33)
106 3a2a_A Voltage-gated hydrogen 30.9 1.1E+02 0.0038 19.9 6.4 43 86-129 13-55 (58)
107 2csy_A Zinc finger protein 183 30.8 9.3 0.00032 26.1 -0.3 46 201-256 13-59 (81)
108 2eli_A Protein kinase C alpha 30.7 41 0.0014 23.6 3.2 33 202-238 27-63 (85)
109 1v87_A Deltex protein 2; ring- 30.7 11 0.00037 27.5 0.1 33 223-257 60-93 (114)
110 2lh0_A Histone chaperone RTT10 30.6 21 0.00072 24.6 1.5 29 17-45 9-37 (70)
111 2qyw_A Vesicle transport throu 30.6 1.5E+02 0.0052 21.4 9.3 30 93-122 72-101 (102)
112 2ecv_A Tripartite motif-contai 30.4 13 0.00045 25.1 0.5 48 203-256 19-69 (85)
113 2ct0_A Non-SMC element 1 homol 30.1 18 0.0006 25.1 1.1 44 205-255 17-61 (74)
114 3u5n_A E3 ubiquitin-protein li 30.0 14 0.00049 30.4 0.7 44 203-253 7-67 (207)
115 3ghg_B Fibrinogen beta chain; 29.8 3.5E+02 0.012 25.2 10.8 35 87-121 158-192 (461)
116 2dfs_A Myosin-5A; myosin-V, in 29.6 4.8E+02 0.017 26.9 14.3 21 84-104 1023-1043(1080)
117 3sjb_C Golgi to ER traffic pro 29.5 1.6E+02 0.0055 21.3 8.7 36 6-45 4-39 (93)
118 2dmj_A Poly (ADP-ribose) polym 29.5 11 0.00039 27.9 -0.0 9 228-236 57-65 (106)
119 2zqm_A Prefoldin beta subunit 29.1 1.6E+02 0.0055 21.2 13.4 94 19-124 3-109 (117)
120 3oja_B Anopheles plasmodium-re 28.7 3.5E+02 0.012 25.0 11.3 17 30-46 457-473 (597)
121 1v9x_A Poly (ADP-ribose) polym 28.6 12 0.0004 28.3 -0.1 11 227-237 51-61 (114)
122 2egp_A Tripartite motif-contai 28.4 46 0.0016 22.0 3.1 49 202-256 11-63 (79)
123 1uw0_A DNA ligase III; DNA rep 26.5 11 0.00038 28.5 -0.5 10 227-236 48-57 (117)
124 1qf8_A Casein kinase II; casei 26.0 27 0.00091 28.6 1.6 20 235-254 122-142 (182)
125 3ztg_A E3 ubiquitin-protein li 25.5 12 0.0004 26.2 -0.6 47 202-255 12-59 (92)
126 1faq_A RAF-1; transferase, ser 25.5 30 0.001 21.6 1.5 33 202-239 13-46 (52)
127 3od8_A Poly [ADP-ribose] polym 25.5 14 0.00046 28.1 -0.2 11 227-237 69-79 (116)
128 1l1o_C Replication protein A 7 25.4 20 0.00067 29.0 0.7 11 244-254 60-70 (181)
129 2cs2_A Poly [ADP-ribose] polym 25.1 13 0.00044 28.9 -0.4 9 228-236 61-69 (134)
130 3ghg_C Fibrinogen gamma chain; 25.1 4E+02 0.014 24.4 14.5 37 84-120 97-133 (411)
131 2rbd_A BH2358 protein; putativ 24.6 2E+02 0.0068 22.4 6.7 28 100-127 48-75 (171)
132 3odc_A Poly [ADP-ribose] polym 24.6 13 0.00046 27.9 -0.4 9 228-236 53-61 (111)
133 2ep4_A Ring finger protein 24; 24.5 11 0.00038 25.1 -0.8 45 204-256 16-62 (74)
134 1v5n_A PDI-like hypothetical p 24.4 19 0.00066 25.7 0.4 33 204-240 48-81 (89)
135 3vk8_A Probable formamidopyrim 24.0 24 0.00084 30.9 1.2 15 243-257 276-290 (295)
136 2ecj_A Tripartite motif-contai 23.3 62 0.0021 19.9 2.8 43 203-252 15-58 (58)
137 3dpl_R Ring-box protein 1; ubi 23.1 12 0.00041 27.7 -0.9 27 223-255 72-98 (106)
138 2vrw_B P95VAV, VAV1, proto-onc 23.1 41 0.0014 30.2 2.5 32 201-236 355-390 (406)
139 1jm7_A BRCA1, breast cancer ty 22.4 17 0.00057 26.3 -0.3 46 204-256 22-68 (112)
140 2rf4_B DNA-directed RNA polyme 22.2 40 0.0014 24.1 1.8 42 4-56 34-75 (87)
141 1nkp_A C-MYC, MYC proto-oncoge 22.1 1.8E+02 0.0062 20.4 5.4 40 7-46 44-83 (88)
142 3u50_C Telomerase-associated p 21.6 23 0.00079 28.7 0.4 12 244-255 57-68 (172)
143 3ghg_B Fibrinogen beta chain; 21.4 1.8E+02 0.0063 27.1 6.5 39 7-45 83-121 (461)
144 1m1j_A Fibrinogen alpha subuni 21.3 5.1E+02 0.017 24.2 13.4 87 10-116 70-156 (491)
145 1lwu_C Fibrinogen gamma chain; 21.2 3.6E+02 0.012 23.7 8.3 46 75-121 10-55 (323)
146 2zdi_C Prefoldin subunit alpha 20.8 2.7E+02 0.0091 21.3 6.6 42 83-124 96-137 (151)
147 1chc_A Equine herpes virus-1 r 20.5 16 0.00054 23.8 -0.7 43 205-256 7-50 (68)
148 2dq0_A Seryl-tRNA synthetase; 20.4 4.7E+02 0.016 24.0 9.3 73 27-124 29-101 (455)
149 2ysj_A Tripartite motif-contai 20.2 26 0.00089 22.4 0.4 44 202-252 19-63 (63)
150 2ecn_A Ring finger protein 141 20.2 26 0.00088 22.9 0.4 42 203-255 15-57 (70)
151 2l7p_A Histone-lysine N-methyl 20.0 22 0.00076 26.3 0.0 33 214-251 26-58 (100)
No 1
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=181.02 Aligned_cols=102 Identities=31% Similarity=0.567 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 024980 6 TGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTK-YCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQD 84 (259)
Q Consensus 6 ~~~yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 84 (259)
+|+|||+|+++|+|||.||+|+|++||+||.++++++.++++..+ |+...+ ++...++. ..+.+|++.|.
T Consensus 2 ~~~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~r~-~~l~~I~~~~~ 72 (104)
T 4afl_A 2 AGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSAR--------SLSSEEKL-ALLKQIQEAYG 72 (104)
T ss_dssp CCHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS--------CCCHHHHH-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCChhhhH-HHHHHHHHHHH
Confidence 679999999999999999999999999999999999999988764 654322 12334444 45589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 85 NALSLCTEKVLLARQAYDIIDSHIKRLDEDLN 116 (259)
Q Consensus 85 ~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~ 116 (259)
++++++||||+||++||++||+|++|||.||+
T Consensus 73 ~~~~l~dEKv~lA~~~~dlvdkhirrLD~dla 104 (104)
T 4afl_A 73 KCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLA 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999873
No 2
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.86 E-value=5.4e-23 Score=144.09 Aligned_cols=58 Identities=66% Similarity=1.432 Sum_probs=48.4
Q ss_pred CCCCCCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 195 DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 195 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
+.++|+++++||+|+++++|+||+|||.+|+ ++|||++||||+..| .++||||.|+..
T Consensus 3 ~~~~d~~e~~yC~C~~~~~g~MI~CD~c~C~-~~WfH~~Cvgl~~~p--~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 3 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCP-IEWFHFSCVSLTYKP--KGKWYCPKCRGD 60 (62)
T ss_dssp -------CCEETTTTEECCSEEEECSCTTCS-SCEEETGGGTCSSCC--SSCCCCHHHHTC
T ss_pred ccccCCCCCcEEECCCCCCCCeeeeeCCCCC-cccEecccCCcCcCC--CCCEECcCcccC
Confidence 5678999999999999999999999988899 999999999999999 899999999864
No 3
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.85 E-value=4.4e-22 Score=143.14 Aligned_cols=61 Identities=62% Similarity=1.443 Sum_probs=55.7
Q ss_pred CCCCCCCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccccC
Q 024980 194 VDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 194 ~~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
.+.++++++.+||+|+++++|+||+|||.+|+ ++|||+.||||+..| .++||||.|.....
T Consensus 7 ~~~~~d~~~~~~C~C~~~~~g~MI~CD~~~C~-~~wfH~~Cvgl~~~p--~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 7 GDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLTTKP--RGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCCCTTSCCCSTTCCCSCSSEECCSCSSCS-CCCEETTTTTCSSCC--SSCCCCTTTSSCSS
T ss_pred cccccCCCCCCEEECCCCCCCCEeEeeCCCCC-CccEecccCCcCcCC--CCCEECCCCCcccc
Confidence 46788999999999999999999999977799 899999999999999 88999999986554
No 4
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.85 E-value=9.8e-22 Score=147.42 Aligned_cols=62 Identities=61% Similarity=1.432 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccccC
Q 024980 193 DVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 193 ~~~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
+.+.++++++.+||+|+++++|+||+|||.+|+ ++|||+.||||+..| .++||||.|.....
T Consensus 26 ~~~~~~d~~e~~yCiC~~~~~g~MI~CD~~dC~-~~WfH~~CVgl~~~p--~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 26 VLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLTTKP--RGKWFCPRCSQESG 87 (91)
T ss_dssp CCSCCCCSCCCBCSTTCCBCCSCCCCCSCSSCS-CCCCCSTTTTCSSCC--CSSCCCTTTCCCCS
T ss_pred cccCCcCCCCCcEEECCCCCCCCEeEecCCCCC-CCCEecccCCcCcCC--CCCEECcCccCcCC
Confidence 347789999999999999999999999988899 999999999999999 89999999987654
No 5
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.84 E-value=2.6e-22 Score=139.32 Aligned_cols=56 Identities=61% Similarity=1.359 Sum_probs=48.0
Q ss_pred CCCCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 197 PIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 197 ~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
++|+++++||+|+++++|+||+|||.+|+ ++|||++||||+..| .++||||.|..+
T Consensus 3 ~~d~~e~~yC~C~~~~~g~mi~CD~~~C~-~~wfH~~Cvgl~~~p--~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 3 CRGSNEPTYCLCHQVSYGEMIGCDNPDCP-IEWFHFACVDLTTKP--KGKWFCPRCVQE 58 (59)
T ss_dssp -----CCEETTTTEECCSEEEECSCTTCS-SCEEETGGGTCSSCC--SSCCCCHHHHCC
T ss_pred ccCCCCCcEEECCCCCCCCeeEeeCCCCC-CCCEecccCCcccCC--CCCEECcCccCc
Confidence 57889999999999999999999988899 899999999999999 789999999754
No 6
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.83 E-value=1.2e-21 Score=146.69 Aligned_cols=57 Identities=51% Similarity=1.222 Sum_probs=48.4
Q ss_pred CCCCCCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccc-ccc
Q 024980 195 DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPT-CRL 254 (259)
Q Consensus 195 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~-C~~ 254 (259)
+.+.++++.+||+|+++++|+||+|||.+|+ ++|||+.||||+..| .++||||. |..
T Consensus 18 ~~~~~~~~~~yCiC~~~~~g~MI~CD~c~C~-~eWfH~~CVgl~~~p--~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 18 TEGNNNQEEVYCFCRNVSYGPMVACDNPACP-FEWFHYGCVGLKQAP--KGKWYCSKDCKE 75 (90)
T ss_dssp ------CCSCCSTTTCCCSSSEECCCSSSCS-CSCEETTTSSCSSCT--TSCCCSSHHHHH
T ss_pred CCCCCCCCCcEEEeCCCCCCCEEEecCCCCc-cccCcCccCCCCcCC--CCCccCChhhcc
Confidence 4457788899999999999999999988899 999999999999999 78999999 863
No 7
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.82 E-value=8.5e-22 Score=137.20 Aligned_cols=58 Identities=66% Similarity=1.540 Sum_probs=47.5
Q ss_pred CCCCCCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 195 DQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 195 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
|.++|+++++||+|+++++|+||+||+.+|+ ++|||+.||||+..| .++||||.|..+
T Consensus 2 ~~~~d~~e~~~C~C~~~~~g~mi~CD~cdC~-~~wfH~~Cvgl~~~p--~g~w~C~~C~~~ 59 (60)
T 2vnf_A 2 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS-IEWFHFACVGLTTKP--RGKWFCPRCSQE 59 (60)
T ss_dssp -------CCEETTTTEECCSEEEECSCTTCS-SCEEETGGGTCSSCC--SSCCCCHHHHC-
T ss_pred CcccCCCCCCEEECCCcCCCCEEEeCCCCCC-CceEehhcCCCCcCC--CCCEECcCccCc
Confidence 5678999999999999999999999977799 899999999999999 899999999753
No 8
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.4e-21 Score=136.34 Aligned_cols=54 Identities=56% Similarity=1.398 Sum_probs=49.9
Q ss_pred CCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 199 DPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 199 ~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
++++++||+|+++++|+||+|||.+|+ ++|||+.||||+..| .++||||.|...
T Consensus 2 ~~~~~~yC~C~~~~~g~MI~CD~cdC~-~~WfH~~Cvgl~~~p--~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 2 SSGSSGYCICNQVSYGEMVGCDNQDCP-IEWFHYGCVGLTEAP--KGKWYCPQCTAA 55 (70)
T ss_dssp CCSCCCCSTTSCCCCSSEECCSCTTCS-CCCEEHHHHTCSSCC--SSCCCCHHHHHH
T ss_pred CCCCCeEEEcCCCCCCCEeEeCCCCCC-ccCCcccccccCcCC--CCCEECCCCCcc
Confidence 467899999999999999999988898 899999999999999 899999999753
No 9
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.74 E-value=6e-19 Score=129.09 Aligned_cols=62 Identities=31% Similarity=0.768 Sum_probs=53.6
Q ss_pred CCCCCCCCCCcceecCCC-CCCCccccCCCCCCCCceeecccCCCCCCCC-----CCCceeccccccccC
Q 024980 194 VDQPIDPNEPTYCVCHQV-SFGDMIACDNENCQGGEWFHYACVGLTPETR-----FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 194 ~~~~~~~~~~~~C~C~~~-~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-----~~~~w~C~~C~~~~~ 257 (259)
++.++++++.+||+|+++ .+|.||+|||+.|. .|||+.||||+..++ ..++||||.|+....
T Consensus 7 ~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~--~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 7 GEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCH--VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTC--CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cccccCCCCCEEeECCCcCCCCCEEEECCccCC--ccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 366788899999999999 68999999999999 699999999998873 247999999986543
No 10
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.66 E-value=3.2e-17 Score=116.81 Aligned_cols=58 Identities=29% Similarity=0.761 Sum_probs=48.6
Q ss_pred CCCCCCCCcceecCCC-CCCCccccCCCCCCCCceeecccCCCCCCCCC----CCceeccccccc
Q 024980 196 QPIDPNEPTYCVCHQV-SFGDMIACDNENCQGGEWFHYACVGLTPETRF----KGKWYCPTCRLL 255 (259)
Q Consensus 196 ~~~~~~~~~~C~C~~~-~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~----~~~w~C~~C~~~ 255 (259)
.+.++++.+||+|+.+ .+|.||+|||+.|. .|||+.||||+..++. ..+||||.|+..
T Consensus 3 d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~--~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQ--VWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp SCCCSSCEECCTTCCCSCCSCEEECSCTTTC--EEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCcCCCCCEEeECCCCcCCCCEEEECCCCCC--CeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 3567788999999887 47899999988899 9999999999887742 248999999853
No 11
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.58 E-value=5.4e-16 Score=110.35 Aligned_cols=53 Identities=25% Similarity=0.655 Sum_probs=46.1
Q ss_pred CCCCCCcceecCCCCCC-CccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 198 IDPNEPTYCVCHQVSFG-DMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 198 ~~~~~~~~C~C~~~~~g-~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
.++++.+||+|+++++| .||+|| .|. +|||++|||++..+. .+.|+||.|...
T Consensus 14 ~~~~~~~~CiC~~~~~~~~MIqCd--~C~--~WfH~~Cvgi~~~~~-~~~~~C~~C~~s 67 (68)
T 3o70_A 14 LYFQGLVTCFCMKPFAGRPMIECN--ECH--TWIHLSCAKIRKSNV-PEVFVCQKCRDS 67 (68)
T ss_dssp CTTTTCCCSTTCCCCTTCCEEECT--TTC--CEEETTTTTCCTTSC-CSSCCCHHHHTC
T ss_pred CCCCCceEeECCCcCCCCCEEECC--CCC--ccccccccCcCcccC-CCcEECCCCCCC
Confidence 56678999999999876 699999 799 999999999998653 579999999753
No 12
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.58 E-value=3.8e-16 Score=105.44 Aligned_cols=49 Identities=27% Similarity=0.743 Sum_probs=43.2
Q ss_pred CCCcceecCCCCCC-CccccCCCCCCCCceeecccCCCCCCCCCCCceecccccc
Q 024980 201 NEPTYCVCHQVSFG-DMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRL 254 (259)
Q Consensus 201 ~~~~~C~C~~~~~g-~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~ 254 (259)
.+.+||+|+++++| .||+|| .|. +|||++|||++..+. .++|+||.|+.
T Consensus 2 ~d~~~C~C~~~~~~~~MI~Cd--~C~--~W~H~~Cvgi~~~~~-~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFAGRPMIECN--ECH--TWIHLSCAKIRKSNV-PEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCTTCCEEECT--TTC--CEEETTTTTCCGGGC-CSSCCCHHHHT
T ss_pred CcCeEEEeCCcCCCCCEEEcC--CCC--ccccccccCCCcccC-CCcEECcCCCC
Confidence 35899999999876 999999 799 999999999998754 57999999974
No 13
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.56 E-value=1e-15 Score=107.57 Aligned_cols=55 Identities=29% Similarity=0.662 Sum_probs=47.1
Q ss_pred CCCCcce-ecCCCC--CCCccccCCCCCCCCceeecccCCCCCCCC-CCCceeccccccccCC
Q 024980 200 PNEPTYC-VCHQVS--FGDMIACDNENCQGGEWFHYACVGLTPETR-FKGKWYCPTCRLLPQC 258 (259)
Q Consensus 200 ~~~~~~C-~C~~~~--~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-~~~~w~C~~C~~~~~~ 258 (259)
.++.+|| +|++++ .+.||+|| .|. +|||+.||||+..++ ..+.|+|+.|+.+.++
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd--~C~--~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCD--LCE--MWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECS--SSC--CEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCccCCCCCEEEcc--CCC--CCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 4678999 999997 47899999 899 999999999998864 3479999999876654
No 14
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.53 E-value=1.6e-15 Score=109.07 Aligned_cols=56 Identities=30% Similarity=0.653 Sum_probs=46.9
Q ss_pred CCCCCCcceecCCCC-CC-CccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccccC
Q 024980 198 IDPNEPTYCVCHQVS-FG-DMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 198 ~~~~~~~~C~C~~~~-~g-~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
.++++.+||+|+++. +| .||+|| .|. +|||+.|||++..++..++||||.|....+
T Consensus 11 ~~~~~~~~C~C~~~~~~g~~mI~Cd--~C~--~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 11 GVDNWKVDCKCGTKDDDGERMLACD--GCG--VWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SSCSSEECCTTCCCSCCSSCEEECS--SSC--EEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CCCCcceEeeCCCccCCCCcEEECC--CCC--CccCCeeeccCccccCCCcEECCCccCCCC
Confidence 445678999999996 56 699999 799 999999999997654468999999986543
No 15
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.53 E-value=7.3e-16 Score=111.75 Aligned_cols=56 Identities=36% Similarity=0.775 Sum_probs=47.5
Q ss_pred CCCCCCcceecCCCCC--CCccccCCCCCCCCceeecccCCCCCCCC-CCCceeccccccccC
Q 024980 198 IDPNEPTYCVCHQVSF--GDMIACDNENCQGGEWFHYACVGLTPETR-FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 198 ~~~~~~~~C~C~~~~~--g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-~~~~w~C~~C~~~~~ 257 (259)
..+++++||+|++++. +.||+|| .|. +|||+.|||++..++ ..+.|+|+.|....+
T Consensus 5 ~~~~~~~yCiC~~~~~~~~~MI~Cd--~C~--~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 5 SMATVPVYCVCRLPYDVTRFMIECD--ACK--DWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp TTCCCCEETTTTEECCTTSCEEECT--TTC--CEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CCCCCeeEEECCCcCCCCCCEEEcC--CCC--CCEecccccccccccCCCCEEECCCCcccCC
Confidence 3557799999999964 5899999 799 999999999999874 347899999987654
No 16
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.53 E-value=1.3e-15 Score=111.42 Aligned_cols=53 Identities=38% Similarity=0.825 Sum_probs=46.0
Q ss_pred CCCcceecCCCC--CCCccccCCCCCCCCceeecccCCCCCCCC-CCCceeccccccccC
Q 024980 201 NEPTYCVCHQVS--FGDMIACDNENCQGGEWFHYACVGLTPETR-FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 201 ~~~~~C~C~~~~--~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-~~~~w~C~~C~~~~~ 257 (259)
++++||+|++++ .+.||+|| .|. +|||+.||||+..+. ..+.|+|+.|....+
T Consensus 10 ~~~~~C~C~~~~d~~~~MIqCd--~C~--~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYCLCRQPYNVNHFMIECG--LCQ--DWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCSTTSCSCCSSSCEEEBT--TTC--CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEEEcCCccCCCCceEEcC--CCC--CcEEeeecCcccccccCCCeEECCCcccccC
Confidence 568999999997 57999999 799 999999999998764 347999999997654
No 17
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.50 E-value=2.9e-15 Score=108.77 Aligned_cols=55 Identities=42% Similarity=1.014 Sum_probs=45.6
Q ss_pred CCCCCCcceecCCCCCC-CccccCCCCCCCCceeecccCCCCCCCC-----CCCceeccccccccC
Q 024980 198 IDPNEPTYCVCHQVSFG-DMIACDNENCQGGEWFHYACVGLTPETR-----FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 198 ~~~~~~~~C~C~~~~~g-~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-----~~~~w~C~~C~~~~~ 257 (259)
.|++ .+||+|+++.++ .||+|| .|. +|||+.||||+..++ ....|+|+.|+...+
T Consensus 12 ~d~~-~~~C~C~~~~~~~~MI~Cd--~C~--~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 12 YDPN-ALYCICRQPHNNRFMICCD--RCE--EWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCTT-CCCSTTCCCCCSSCEEECS--SSC--CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred cCCC-CCEEECCCccCCCCEEEeC--CCC--CcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3444 799999999874 899999 899 999999999998652 247999999986554
No 18
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.48 E-value=5.4e-15 Score=107.02 Aligned_cols=55 Identities=33% Similarity=0.872 Sum_probs=46.9
Q ss_pred CCCCCCcce-ecCCCCCC-CccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 198 IDPNEPTYC-VCHQVSFG-DMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 198 ~~~~~~~~C-~C~~~~~g-~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
.++++..|| +|+++.+| .||+|| .|. +|||+.|||++..+...+.||||.|....
T Consensus 13 ~~~~~~~~C~~C~~~~~~~~mi~CD--~C~--~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDDGSPMIGCD--DCD--DWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSSCEEECBTTTTBCCSSCCEEECS--SSS--SEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred ccCCCCcCCCCCCCCCCCCCEEEcC--CCC--cccccccCCCCccCCCCCCEEChhccCch
Confidence 345567899 99999887 699999 899 99999999998887546899999998654
No 19
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.40 E-value=2.1e-14 Score=96.84 Aligned_cols=46 Identities=35% Similarity=0.865 Sum_probs=39.0
Q ss_pred ceecCCCCC--CCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccc
Q 024980 205 YCVCHQVSF--GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCR 253 (259)
Q Consensus 205 ~C~C~~~~~--g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~ 253 (259)
.|+|++|+. +.||+||| .|. +|||+.||||+..++..++|+||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~--~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCD--EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTC--CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCC-CCC--ccCcccccCCCccccCCCCEECCCCC
Confidence 478999975 47999998 899 99999999999876434799999995
No 20
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=99.36 Aligned_cols=53 Identities=28% Similarity=0.710 Sum_probs=43.7
Q ss_pred CCCCCCcceecCCCC-CCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 198 IDPNEPTYCVCHQVS-FGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 198 ~~~~~~~~C~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
...++.+.|+|+.+. .|.||+|| .|. .|||+.|||++.... .+.||||.|+..
T Consensus 23 ~~~~d~vrCiC~~~~~~~~mi~Cd--~C~--~w~H~~C~~~~~~~~-p~~w~C~~C~~~ 76 (98)
T 2lv9_A 23 SYGTDVTRCICGFTHDDGYMICCD--KCS--VWQHIDCMGIDRQHI-PDTYLCERCQPR 76 (98)
T ss_dssp CCCCCBCCCTTSCCSCSSCEEEBT--TTC--BEEETTTTTCCTTSC-CSSBCCTTTSSS
T ss_pred CCCCCCEEeECCCccCCCcEEEcC--CCC--CcCcCcCCCCCccCC-CCCEECCCCcCC
Confidence 344567899999986 47999999 899 999999999976543 458999999854
No 21
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.32 E-value=8.5e-14 Score=115.98 Aligned_cols=55 Identities=31% Similarity=0.893 Sum_probs=43.7
Q ss_pred CCCCCCCcceecCCCC--CCCccccCCCCCCCCceeecccCCCCCCCC-CCCceeccccccc
Q 024980 197 PIDPNEPTYCVCHQVS--FGDMIACDNENCQGGEWFHYACVGLTPETR-FKGKWYCPTCRLL 255 (259)
Q Consensus 197 ~~~~~~~~~C~C~~~~--~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-~~~~w~C~~C~~~ 255 (259)
|.++++.+||+|+++. .|.||+|| .|+ .|||+.|||++..+. ..+.|+||.|+..
T Consensus 2 ~~~~~~~~~C~C~~~~~~~~~mi~Cd--~C~--~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 2 PLGSDTKLYCICKTPEDESKFYIGCD--RCQ--NWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -----CCEETTTTEECCTTSCEEECT--TTC--CEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCCCCcEeeCCCCCCCCCCEeECC--CCC--chhChhhcCCchhhccCccCeecCCCcch
Confidence 4566789999999996 57899999 899 999999999987652 3679999999854
No 22
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.32 E-value=3.6e-13 Score=103.67 Aligned_cols=49 Identities=35% Similarity=0.878 Sum_probs=40.7
Q ss_pred cce-ecCCC--CCCCccccCCCCCCCCceeecccCCCCC--------CCCCCCceeccccccccC
Q 024980 204 TYC-VCHQV--SFGDMIACDNENCQGGEWFHYACVGLTP--------ETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 204 ~~C-~C~~~--~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~--------~~~~~~~w~C~~C~~~~~ 257 (259)
..| +|+++ ..++||+|| +.|. +|||+.||||+. .| .++|+||.|.....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~--~WfH~~CVglt~~~~~~i~~~~--~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQ--KWFHRECTGMTESAYGLLTTEA--SAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTC--CEEEGGGTTCCHHHHHHHHHCT--TEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEec-CCcc--cccccccCCcCHHHHHhhccCC--CCCEECccccCcCC
Confidence 345 89999 467999998 4899 999999999997 34 58999999986543
No 23
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.26 E-value=6.3e-13 Score=93.58 Aligned_cols=49 Identities=33% Similarity=0.778 Sum_probs=39.5
Q ss_pred CcceecCCCCC--CCccccCCCCCCCCceeecccCCCCCCCC------CCCceecccccc
Q 024980 203 PTYCVCHQVSF--GDMIACDNENCQGGEWFHYACVGLTPETR------FKGKWYCPTCRL 254 (259)
Q Consensus 203 ~~~C~C~~~~~--g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~------~~~~w~C~~C~~ 254 (259)
...++|++|.. ..||+||+ .|. .|||+.||||+...+ ..+.|+||.|..
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~--~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQ--KWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTC--CEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCccCCCccCCCCCeEeccc-Ccc--ccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 34458999975 47999997 899 999999999998521 167999999963
No 24
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.26 E-value=3.4e-13 Score=128.96 Aligned_cols=56 Identities=39% Similarity=0.875 Sum_probs=47.8
Q ss_pred CCCCCCcceecCCCC--CCCccccCCCCCCCCceeecccCCCCCCCC-CCCceeccccccccC
Q 024980 198 IDPNEPTYCVCHQVS--FGDMIACDNENCQGGEWFHYACVGLTPETR-FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 198 ~~~~~~~~C~C~~~~--~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-~~~~w~C~~C~~~~~ 257 (259)
.+.++.+||+|++++ +|.||+|| .|. +|||+.|||++..++ ..++|+||.|....|
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd--~C~--~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECD--ICK--DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBT--TTC--CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEcc--CCC--CceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 445679999999997 57999999 799 999999999999874 347899999986654
No 25
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.22 E-value=4.5e-12 Score=97.65 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=42.3
Q ss_pred CCCCCcceecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccc
Q 024980 199 DPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCR 253 (259)
Q Consensus 199 ~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~ 253 (259)
.+.+..||++.+ ..|+||.|||+.|+ .|||+.||||+..| .|+||||.|.
T Consensus 11 ~~~~~~~C~~C~-~~G~ll~CD~~~Cp--~~fH~~Cl~L~~~P--~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCG-DGGELVMCDKKDCP--KAYHLLCLNLTQPP--YGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTC-CCSEEEECCSTTCC--CEECTGGGTCSSCC--SSCCCCGGGB
T ss_pred cCCCCCCCCcCC-CCCcEeEECCCCCC--cccccccCcCCcCC--CCCEECCCCC
Confidence 344577897544 56899999999999 69999999999999 9999999875
No 26
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=84.75 Aligned_cols=51 Identities=37% Similarity=0.953 Sum_probs=41.7
Q ss_pred CCCCcce-ecCCCCCCCccccCCCCCCCCceeecccCCC--CCCCCCCCceeccccccccCCC
Q 024980 200 PNEPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGL--TPETRFKGKWYCPTCRLLPQCQ 259 (259)
Q Consensus 200 ~~~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl--~~~~~~~~~w~C~~C~~~~~~~ 259 (259)
.+...|| +|++ .|+||.|| .|+ .|||+.|++. +..| .+.|||+.|... |+|
T Consensus 8 ~~~~~~C~vC~~--~g~ll~CD--~C~--~~fH~~Cl~p~l~~~p--~g~W~C~~C~~~-g~~ 61 (61)
T 2l5u_A 8 TDHQDYCEVCQQ--GGEIILCD--TCP--RAYHMVCLDPDMEKAP--EGKWSCPHCEKE-GIQ 61 (61)
T ss_dssp SCCCSSCTTTSC--CSSEEECS--SSS--CEEEHHHHCTTCCSCC--CSSCCCTTGGGG-SCC
T ss_pred CCCCCCCccCCC--CCcEEECC--CCC--hhhhhhccCCCCCCCC--CCceECcccccc-ccC
Confidence 3446788 5987 47999999 899 7999999997 5566 899999999864 655
No 27
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.6e-11 Score=82.05 Aligned_cols=46 Identities=35% Similarity=1.050 Sum_probs=39.4
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCC--CCCCCCCCCceeccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~~ 255 (259)
...+| +|+.. |+||.|| .|+ .|||+.|++ ++..| .+.||||.|..+
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd--~C~--~~~H~~Cl~ppl~~~p--~g~W~C~~C~~q 56 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCD--TCS--RVYHLDCLDPPLKTIP--KGMWICPRCQDQ 56 (56)
T ss_dssp SCCSCSSSCCS--SCCEECS--SSS--CEECSSSSSSCCCSCC--CSSCCCHHHHCC
T ss_pred CCCCCccCCCC--CeEEEcC--CCC--cceECccCCCCcCCCC--CCceEChhhhCc
Confidence 35567 68875 7999999 899 999999999 88888 899999999753
No 28
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.04 E-value=8.3e-11 Score=82.90 Aligned_cols=47 Identities=36% Similarity=0.940 Sum_probs=39.6
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCC--CCCCCCCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~~~ 256 (259)
...+| +|+.. |+||.|| .|+ .|||+.|++ ++..| .+.|||+.|....
T Consensus 7 ~~~~C~vC~~~--g~ll~CD--~C~--~~fH~~Cl~ppl~~~P--~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCD--GCP--RAFHLACLSPPLREIP--SGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC--SSCEECS--SCC--CEECTTTSSSCCSSCC--SSCCCCHHHHHTC
T ss_pred CCCCCccCCCC--CCEEEcC--CCC--hhhcccccCCCcCcCC--CCCeECccccCcc
Confidence 34567 68864 7999999 899 799999999 77888 8999999998554
No 29
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.04 E-value=6.8e-11 Score=79.00 Aligned_cols=43 Identities=35% Similarity=0.919 Sum_probs=37.2
Q ss_pred ecCCCC-CCCccccCCCCCCCCceeecccC--CCCCCCCCCCceeccccccc
Q 024980 207 VCHQVS-FGDMIACDNENCQGGEWFHYACV--GLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 207 ~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cv--gl~~~~~~~~~w~C~~C~~~ 255 (259)
+|++.. .+.||.|| .|+ .|||+.|+ +++..| .+.|||+.|...
T Consensus 5 vC~~~~~~~~ll~Cd--~C~--~~~H~~Cl~p~l~~~P--~g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGEDDKLILCD--ECN--KAFHLFCLRPALYEVP--DGEWQCPACQPA 50 (51)
T ss_dssp TTCCSSCCSCCEECT--TTC--CEECHHHHCTTCCSCC--SSCCSCTTTSCC
T ss_pred CCCCCCCCCCEEECC--CCC--hhhCcccCCCCcCCCC--CCcEECcCcccc
Confidence 688775 46899999 899 89999999 688888 899999999753
No 30
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.00 E-value=7.2e-11 Score=87.91 Aligned_cols=51 Identities=22% Similarity=0.576 Sum_probs=42.1
Q ss_pred CCCcceecCCCC---CCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccccC
Q 024980 201 NEPTYCVCHQVS---FGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 201 ~~~~~C~C~~~~---~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
++...++|+... .+.||.|| .|+ .|||+.|+|++..| .|.|||+.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD--~C~--~~fH~~Cl~p~~vP--~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCD--MCN--LAVHQECYGVPYIP--EGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECS--SSC--CCCCHHHHTCSSCC--SSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECC--CCC--chhhcccCCCCccC--CCceECccccCccc
Confidence 345555898874 35899999 899 79999999999888 89999999986543
No 31
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.97 E-value=1.9e-10 Score=79.46 Aligned_cols=44 Identities=36% Similarity=1.099 Sum_probs=38.0
Q ss_pred cce-ecCCCCCCCccccCCCCCCCCceeecccCC--CCCCCCCCCceeccccccc
Q 024980 204 TYC-VCHQVSFGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 204 ~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~~ 255 (259)
.+| +|+.. |+||.|| .|+ .|||+.|++ ++..| .+.|||+.|...
T Consensus 6 ~~C~vC~~~--g~ll~Cd--~C~--~~fH~~Cl~ppl~~~p--~g~W~C~~C~~~ 52 (60)
T 2puy_A 6 DFCSVCRKS--GQLLMCD--TCS--RVYHLDCLDPPLKTIP--KGMWICPRCQDQ 52 (60)
T ss_dssp SSCTTTCCC--SSCEECS--SSS--CEECGGGSSSCCSSCC--CSCCCCHHHHHH
T ss_pred CCCcCCCCC--CcEEEcC--CCC--cCEECCcCCCCcCCCC--CCceEChhccCh
Confidence 456 78874 7999999 899 999999999 78878 899999999753
No 32
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.92 E-value=2.9e-10 Score=81.27 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=40.8
Q ss_pred CCCcceecCCCC---CCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 201 NEPTYCVCHQVS---FGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 201 ~~~~~C~C~~~~---~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
++....+|+... .+.||.|| .|+ .|||..|+|++..| .|.|||+.|...
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD--~C~--~~~H~~Cl~~~~vP--~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCD--MCN--LAVHQECYGVPYIP--EGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECS--SSC--CEEEHHHHTCSSCC--SSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECC--CCC--CccccccCCCCcCC--CCCcCCccCcCc
Confidence 334444898874 46999999 899 79999999999888 899999999754
No 33
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.92 E-value=6.4e-10 Score=77.11 Aligned_cols=46 Identities=33% Similarity=1.009 Sum_probs=38.9
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCC--CCCCCCCCCceecccccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~~~ 256 (259)
..+| +|+. .|+||.|| .|+ .+||+.|++ ++..| .+.|||+.|....
T Consensus 9 ~~~C~vC~~--~g~ll~Cd--~C~--~~fH~~Cl~ppl~~~p--~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKD--GGELLCCD--TCP--SSYHIHCLNPPLPEIP--NGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCC--CSSCBCCS--SSC--CCBCSSSSSSCCSSCC--SSCCCCTTTTTTC
T ss_pred CCcCCCCCC--CCCEEEcC--CCC--HHHcccccCCCcCcCC--CCccCChhhcCch
Confidence 5566 6886 47999999 899 889999999 77778 8999999998654
No 34
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=5.1e-10 Score=83.96 Aligned_cols=46 Identities=33% Similarity=0.870 Sum_probs=39.6
Q ss_pred Ccce-ecCCCC-CCCccccCCCCCCCCceeecccCC--CCCCCCCCCceecccccc
Q 024980 203 PTYC-VCHQVS-FGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRL 254 (259)
Q Consensus 203 ~~~C-~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~ 254 (259)
..+| +|++.. .+.||.|| .|+ .|||..|++ |+..| .+.||||.|..
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD--~C~--~~~H~~Cl~Ppl~~~P--~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCD--GCD--DNYHIFCLLPPLPEIP--RGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECT--TTC--CEECSSSSSSCCSSCC--SSCCCCHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcC--CCC--chhccccCCCCcccCC--CCCcCCccCcC
Confidence 4456 898886 36899999 899 899999999 88888 89999999975
No 35
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.79 E-value=3.2e-09 Score=74.77 Aligned_cols=43 Identities=28% Similarity=0.602 Sum_probs=36.4
Q ss_pred ce-ecCCCCCCCccccCCCCCCCCceeecccCC--CCCCCCCCCceeccccccc
Q 024980 205 YC-VCHQVSFGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 205 ~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~~ 255 (259)
.| +|+.. |+||.|| .|. .|||..|+. |+..| .+.|||+.|+..
T Consensus 14 ~C~vC~~~--~~ll~Cd--~C~--~~~H~~Cl~P~l~~~P--~g~W~C~~C~~~ 59 (66)
T 2lri_C 14 RCGVCGDG--TDVLRCT--HCA--AAFHWRCHFPAGTSRP--GTGLRCRSCSGD 59 (66)
T ss_dssp CCTTTSCC--TTCEECS--SSC--CEECHHHHCTTTCCCC--SSSCCCTTTTTC
T ss_pred CcCCCCCC--CeEEECC--CCC--CceecccCCCccCcCC--CCCEECccccCC
Confidence 35 78754 7899999 899 999999995 77888 899999999854
No 36
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.79 E-value=3.2e-09 Score=75.61 Aligned_cols=42 Identities=33% Similarity=0.852 Sum_probs=36.0
Q ss_pred cCCCC-CCCccccCCCCCCCCceeecccCC--CCCCCCCCC-ceeccccccc
Q 024980 208 CHQVS-FGDMIACDNENCQGGEWFHYACVG--LTPETRFKG-KWYCPTCRLL 255 (259)
Q Consensus 208 C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~-~w~C~~C~~~ 255 (259)
|++.. .|.||.|| .|+ .|||+.|++ |+..| .| .||||.|...
T Consensus 24 C~~~~~~~~ll~CD--~C~--~~yH~~Cl~Ppl~~~P--~g~~W~C~~C~~~ 69 (70)
T 3asl_A 24 CGGRQDPDKQLMCD--ECD--MAFHIYCLDPPLSSVP--SEDEWYCPECRND 69 (70)
T ss_dssp TCCCSCGGGEEECT--TTC--CEEEGGGSSSCCSSCC--SSSCCCCTTTSCC
T ss_pred CCCcCCCCCEEEcC--CCC--CceecccCCCCcCCCC--CCCCcCCcCccCc
Confidence 45554 46999999 899 999999999 88888 88 9999999864
No 37
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.78 E-value=3.4e-09 Score=74.36 Aligned_cols=51 Identities=24% Similarity=0.711 Sum_probs=39.8
Q ss_pred CCCcce-ecCCCC---CCCccccCCCCCCCCceeecccCCCCCC-----CCCCCceeccccccccC
Q 024980 201 NEPTYC-VCHQVS---FGDMIACDNENCQGGEWFHYACVGLTPE-----TRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 201 ~~~~~C-~C~~~~---~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~-----~~~~~~w~C~~C~~~~~ 257 (259)
.+..+| +|+... .+.||.|| .|. .|||..|++..-. | .+.|||+.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd--~C~--~~~H~~C~~p~l~~~~~~p--~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICD--KCG--QGYHQLCHTPHIDSSVIDS--DEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECS--SSC--CEEETTTSSSCCCHHHHHS--SCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECC--CCC--hHHHhhhCCCcccccccCC--CCCEECCCCcCccc
Confidence 334556 898874 37999999 899 9999999996432 5 78999999986543
No 38
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.75 E-value=1.4e-09 Score=103.95 Aligned_cols=40 Identities=35% Similarity=0.909 Sum_probs=34.9
Q ss_pred CCccccCCCCCCCCceeecccCCCCCCCC-CCCceeccccccccC
Q 024980 214 GDMIACDNENCQGGEWFHYACVGLTPETR-FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 214 g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-~~~~w~C~~C~~~~~ 257 (259)
..||+|| .|. +|||+.||||+..++ ..++|+||.|....|
T Consensus 56 ~~mI~CD--~C~--~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 56 FQWIGCD--SCQ--TWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp TSEEECT--TTC--CEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred CCEEECC--CCC--cCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence 5899999 899 999999999999875 358999999987544
No 39
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=7.5e-09 Score=75.02 Aligned_cols=42 Identities=31% Similarity=0.840 Sum_probs=36.8
Q ss_pred ecCCCC-CCCccccCCCCCCCCceeecccCC--CCCCCCCCC-ceecccccc
Q 024980 207 VCHQVS-FGDMIACDNENCQGGEWFHYACVG--LTPETRFKG-KWYCPTCRL 254 (259)
Q Consensus 207 ~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~-~w~C~~C~~ 254 (259)
+|++.. .+.||.|| .|+ .+||+.|++ |+..| .| .||||.|..
T Consensus 31 vC~~~~~~~~ll~CD--~C~--~~yH~~Cl~Ppl~~~P--~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCD--ECN--VAYHIYCLNPPLDKVP--EEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCSTTEEECS--SSC--CEEETTSSSSCCSSCC--CSSCCCCTTTCC
T ss_pred CcCCcCCCCCEEEcC--CCC--ccccccccCCCccCCC--CCCCcCCcCccC
Confidence 577764 57999999 899 899999999 88888 88 999999975
No 40
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.65 E-value=2.9e-08 Score=73.52 Aligned_cols=49 Identities=35% Similarity=0.952 Sum_probs=41.0
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccC--CCCCCCCCCCceeccccccccCC
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACV--GLTPETRFKGKWYCPTCRLLPQC 258 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cv--gl~~~~~~~~~w~C~~C~~~~~~ 258 (259)
...+| +|+.. |+||.|| .|+ ..||+.|+ +++..| .|.|||+.|......
T Consensus 24 n~~~C~vC~~~--g~LL~CD--~C~--~~fH~~Cl~PpL~~~P--~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 24 SATICRVCQKP--GDLVMCN--QCE--FCFHLDCHLPALQDVP--GEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSCCSSSCSS--SCCEECT--TSS--CEECTTSSSTTCCCCC--SSSCCCCSCCCCCSS
T ss_pred CCCcCcCcCCC--CCEEECC--CCC--CceecccCCCCCCCCc--CCCcCCccccCCCcc
Confidence 34567 68865 6899999 899 88999999 888888 899999999976544
No 41
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.46 E-value=6.5e-08 Score=70.01 Aligned_cols=41 Identities=34% Similarity=0.894 Sum_probs=33.7
Q ss_pred cCCCCC-CCccccCCCCCCCCceeecccCC--CCCCCCCCCc-eecccccc
Q 024980 208 CHQVSF-GDMIACDNENCQGGEWFHYACVG--LTPETRFKGK-WYCPTCRL 254 (259)
Q Consensus 208 C~~~~~-g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~-w~C~~C~~ 254 (259)
|++... +.||.|| .|+ .+||+.|++ |+..| .+. |||+.|+.
T Consensus 32 C~~~~d~~~ll~CD--~C~--~~yH~~Cl~PpL~~~P--~g~~W~C~~C~~ 76 (77)
T 3shb_A 32 CGGRQDPDKQLMCD--ECD--MAFHIYCLDPPLSSVP--SEDEWYCPECRN 76 (77)
T ss_dssp TCCCSCGGGEEECT--TTC--CEEETTTSSSCCSSCC--SSSCCCCTTTC-
T ss_pred cCCCCCCcceeEeC--CCC--CccCcccCCCcccCCC--CCCceECcCccc
Confidence 444443 5899999 899 899999999 88888 777 99999975
No 42
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.44 E-value=5.4e-08 Score=75.56 Aligned_cols=43 Identities=26% Similarity=0.794 Sum_probs=36.6
Q ss_pred ecCCCC-CCCccccCCCCCCCCceeecccCC--CCCCCCCCCceeccccccc
Q 024980 207 VCHQVS-FGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 207 ~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~~ 255 (259)
+|++.. .+.||.|| .|+ .|||..|++ |+..| .|.|||+.|...
T Consensus 63 ~C~~~~~~~~ll~Cd--~C~--~~yH~~Cl~ppl~~~P--~g~W~C~~C~~~ 108 (114)
T 2kwj_A 63 LCGTSENDDQLLFCD--DCD--RGYHMYCLNPPVAEPP--EGSWSCHLCWEL 108 (114)
T ss_dssp TTTCCTTTTTEEECS--SSC--CEEETTTSSSCCSSCC--SSCCCCHHHHHH
T ss_pred cccccCCCCceEEcC--CCC--ccccccccCCCccCCC--CCCeECccccch
Confidence 466654 46899999 899 999999999 88888 899999999754
No 43
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.42 E-value=8.5e-08 Score=82.68 Aligned_cols=43 Identities=33% Similarity=0.846 Sum_probs=32.2
Q ss_pred ecCCCC-CCCccccCCCCCCCCceeecccCC--CCCCCCCCC-ceeccccccc
Q 024980 207 VCHQVS-FGDMIACDNENCQGGEWFHYACVG--LTPETRFKG-KWYCPTCRLL 255 (259)
Q Consensus 207 ~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~-~w~C~~C~~~ 255 (259)
+|++.. .+.||.|| .|+ .|||..|++ |+..| .| .||||.|...
T Consensus 179 vC~~~~~~~~lL~CD--~C~--~~yH~~CL~PPL~~vP--~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 179 LCGGRQDPDKQLMCD--ECD--MAFHIYCLDPPLSSVP--SEDEWYCPECRND 225 (226)
T ss_dssp SSCCCCC--CCEECS--SSC--CEECSCC--CCCCSCC--SSSCCCCGGGC--
T ss_pred CCCCCCCCCCeEEcC--CCC--cceeCccCCCCcccCC--CCCCCCCcCCcCc
Confidence 466554 46999999 899 899999999 88888 88 9999999753
No 44
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.37 E-value=5.5e-08 Score=81.60 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=32.4
Q ss_pred CCccccCCCCCCCCceeecccCCCCCCCC-------CCCceeccccccccC
Q 024980 214 GDMIACDNENCQGGEWFHYACVGLTPETR-------FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 214 g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~-------~~~~w~C~~C~~~~~ 257 (259)
+.||+|| .|. .|||.+||||+...+ +...|+||.|+...+
T Consensus 19 ~~MIqCd--~C~--~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 19 SKMMQCG--KCD--RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCEEECT--TTC--CEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CCeEECC--CCC--cccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 5799999 999 999999999987421 123899999997654
No 45
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.37 E-value=2e-07 Score=72.05 Aligned_cols=43 Identities=37% Similarity=0.870 Sum_probs=35.6
Q ss_pred ecCCCC--CCCccccCCCCCCCCceeecccC--CCCCCCCCCCceeccccccc
Q 024980 207 VCHQVS--FGDMIACDNENCQGGEWFHYACV--GLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 207 ~C~~~~--~g~mi~Cd~~~C~~~~wfH~~Cv--gl~~~~~~~~~w~C~~C~~~ 255 (259)
+|+... .+.||.|| .|+ .+||..|+ +|+..| .+.|||+.|+.+
T Consensus 66 vC~~~~~~~~~ll~Cd--~C~--~~yH~~Cl~p~l~~~P--~~~W~C~~C~~k 112 (112)
T 3v43_A 66 SCRDQGKNADNMLFCD--SCD--RGFHMECCDPPLTRMP--KGMWICQICRPR 112 (112)
T ss_dssp TTCCCCCTTCCCEECT--TTC--CEECGGGCSSCCSSCC--SSCCCCTTTSCC
T ss_pred cccCcCCCccceEEcC--CCC--CeeecccCCCCCCCCC--CCCeECCCCCCc
Confidence 455543 25899999 899 89999999 688888 899999999863
No 46
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.35 E-value=7.3e-08 Score=71.52 Aligned_cols=49 Identities=24% Similarity=0.753 Sum_probs=38.7
Q ss_pred CCcce-ecCCCCC---CCccccCCCCCCCCceeecccCCCCC------CCCCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSF---GDMIACDNENCQGGEWFHYACVGLTP------ETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~---g~mi~Cd~~~C~~~~wfH~~Cvgl~~------~~~~~~~w~C~~C~~~~ 256 (259)
...+| +|++... +.||.|| .|. ..||..|++..- .| .+.|||+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD--~C~--~~yH~~Cl~Ppl~~~~~~~p--~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQ--ECH--NLYHQDCHKPQVTDKEVNDP--RLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECS--SSC--CEEETTTSSSCCCHHHHHCT--TCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECC--CCC--CeEcCccCCCcccccccCCC--CCCeeCccccchh
Confidence 34556 7988753 7899999 899 889999998543 46 8999999997543
No 47
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.19 E-value=5.1e-07 Score=69.48 Aligned_cols=43 Identities=28% Similarity=0.803 Sum_probs=35.3
Q ss_pred ecCCCCC-CCccccCCCCCCCCceeecccCC--CCCCCCCCCceeccccccc
Q 024980 207 VCHQVSF-GDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 207 ~C~~~~~-g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C~~C~~~ 255 (259)
+|++... ..||.|| .|. .|||..|++ ++..| .+.||||.|..-
T Consensus 59 ~C~~~~~~~~ll~Cd--~C~--~~yH~~Cl~ppl~~~P--~g~W~C~~C~~c 104 (111)
T 2ysm_A 59 NCKQSGEDSKMLVCD--TCD--KGYHTFCLQPVMKSVP--TNGWKCKNCRIC 104 (111)
T ss_dssp TTCCCSCCTTEEECS--SSC--CEEEGGGSSSCCSSCC--SSCCCCHHHHCC
T ss_pred ccCccCCCCCeeECC--CCC--cHHhHHhcCCccccCC--CCCcCCcCCcCc
Confidence 4666543 4699999 899 999999998 77777 889999999753
No 48
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.90 E-value=8.5e-06 Score=62.57 Aligned_cols=46 Identities=26% Similarity=0.764 Sum_probs=37.6
Q ss_pred cce-ecCCCCC-CCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccc
Q 024980 204 TYC-VCHQVSF-GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCR 253 (259)
Q Consensus 204 ~~C-~C~~~~~-g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~ 253 (259)
.+| +|+.... .+||.|+ .|+ ..||..|+++...+...+.|+|+.|.
T Consensus 8 ~~C~~C~~~g~~~~ll~C~--~C~--~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCT--TCG--QHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTTTSEECS--SSC--CEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCcCCCCCCCCcCCeECC--CCC--CCcChHHhCCccccccccCccCCcCC
Confidence 345 7988864 5789999 899 88999999988776446899999985
No 49
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.81 E-value=3.7e-06 Score=65.13 Aligned_cols=34 Identities=26% Similarity=0.742 Sum_probs=29.3
Q ss_pred CCccccCCCCCCCCceeecccCCCCC-----CCCCCCceeccccc
Q 024980 214 GDMIACDNENCQGGEWFHYACVGLTP-----ETRFKGKWYCPTCR 253 (259)
Q Consensus 214 g~mi~Cd~~~C~~~~wfH~~Cvgl~~-----~~~~~~~w~C~~C~ 253 (259)
++||.|+ .|+ ..||.+|++++. .+ .+.|+|+.|.
T Consensus 21 ~~Li~C~--~C~--~~~H~~Cl~~~~~~~~~~~--~~~W~C~~C~ 59 (114)
T 2kwj_A 21 EELVSCA--DCG--RSGHPTCLQFTLNMTEAVK--TYKWQCIECK 59 (114)
T ss_dssp CCCEECS--SSC--CEECTTTTTCCHHHHHHHH--HTTCCCGGGC
T ss_pred CCCeEeC--CCC--CccchhhCCChhhhhhccC--CCccCccccC
Confidence 5899999 899 899999999873 34 7799999984
No 50
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.75 E-value=5.2e-06 Score=64.01 Aligned_cols=46 Identities=26% Similarity=0.722 Sum_probs=34.5
Q ss_pred cce-ecCCCC-------CCCccccCCCCCCCCceeecccCCCCCCC---CCCCceeccccc
Q 024980 204 TYC-VCHQVS-------FGDMIACDNENCQGGEWFHYACVGLTPET---RFKGKWYCPTCR 253 (259)
Q Consensus 204 ~~C-~C~~~~-------~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~---~~~~~w~C~~C~ 253 (259)
.+| +|.+.. .++||.|+ .|. .+||.+|+++.... ...+.|+|+.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~--~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCA--DCG--NSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECT--TTC--CEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhh--hcC--CCCCCchhcCCHHHHHHhhccccccccCC
Confidence 346 676542 35899999 899 99999999985321 027899999995
No 51
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=97.64 E-value=3.1e-05 Score=64.23 Aligned_cols=50 Identities=14% Similarity=0.323 Sum_probs=32.2
Q ss_pred CCcceecCCCCC--CCccccCCCCCCCCceeecccCCCCCCCC----CCCceeccccccc
Q 024980 202 EPTYCVCHQVSF--GDMIACDNENCQGGEWFHYACVGLTPETR----FKGKWYCPTCRLL 255 (259)
Q Consensus 202 ~~~~C~C~~~~~--g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~----~~~~w~C~~C~~~ 255 (259)
+..||+|+.+.. -.|++|+ .|. .|||.+|++....+- .-=.|.|..|...
T Consensus 4 ~~~yCYCG~~~~~~~~mLqC~--~C~--qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 4 QAGSVDEENGRQLGEVELQCG--ICT--KWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -------CTTCCTTSCEEECT--TTC--CEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred eeeEEEcCCCCCCCceeEeec--ccc--ceecHHHhcccccCccccceeEEEEccccCCC
Confidence 467999999863 4799999 899 999999998544331 1226779999853
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.47 E-value=2.6e-05 Score=62.63 Aligned_cols=45 Identities=29% Similarity=0.786 Sum_probs=35.2
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCCCCC---------CCCCCCceeccccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTP---------ETRFKGKWYCPTCRLL 255 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~---------~~~~~~~w~C~~C~~~ 255 (259)
.-|| +|... |++|+|| .|+ .-||..|+...- .| .+.|+|+.|...
T Consensus 63 ~d~C~vC~~G--G~LlcCD--~Cp--r~Fh~~Cl~p~l~~~~l~~i~~p--~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAEG--GNLICCD--FCH--NAFCKKCILRNLGRKELSTIMDE--NNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCCC--SSEEECS--SSC--CEEEHHHHHHHTCHHHHHHHHTS--TTCCCCTTTCCC
T ss_pred CCeecccCCC--CcEEeCC--CCC--CeeeHhhcCCCCChhhhhhcccC--CCCCEeecccCc
Confidence 4567 67654 7999999 899 779999997322 35 889999999854
No 53
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.19 E-value=4.2e-05 Score=60.41 Aligned_cols=47 Identities=30% Similarity=0.772 Sum_probs=36.2
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCC-------CC--CCCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLT-------PE--TRFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~-------~~--~~~~~~w~C~~C~~~~ 256 (259)
...|| +|... |++|+|| .|+ .-||..|+... .. | .+.|+|+.|...+
T Consensus 56 ~~~~C~vC~dG--G~LlcCd--~Cp--r~Fc~~Cl~~~lg~~~l~~i~~~--~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAEG--GNLICCD--FCH--NAFCKKCILRNLGRRELSTIMDE--NNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCCC--SEEEECS--SSS--CEEEHHHHHHHTCHHHHHHHTCT--TSCCCCTTTCCGG
T ss_pred CCCcCeecCCC--CeeEecC--CCc--hhhhHHHhCCCcchhHHHHhccC--CCCeEcCCcCCHH
Confidence 34678 78754 7999999 899 77999998732 22 5 7899999997643
No 54
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.17 E-value=0.00021 Score=55.05 Aligned_cols=37 Identities=27% Similarity=0.723 Sum_probs=29.0
Q ss_pred CccccCCCCCCCCceeecccCCCCCCC----CCCCceeccccccc
Q 024980 215 DMIACDNENCQGGEWFHYACVGLTPET----RFKGKWYCPTCRLL 255 (259)
Q Consensus 215 ~mi~Cd~~~C~~~~wfH~~Cvgl~~~~----~~~~~w~C~~C~~~ 255 (259)
.||.|+ .|. .|||..|+++.... ...+.|+||.|...
T Consensus 74 ~m~~C~--~C~--~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 74 KLMECC--ICN--EIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp SCEEET--TTC--CEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred ceEEee--ecC--CeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 599999 999 99999999986542 12557999999864
No 55
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.12 E-value=2.1e-05 Score=74.31 Aligned_cols=53 Identities=28% Similarity=0.563 Sum_probs=32.4
Q ss_pred CCCcceecCCCC--CCCccccCCCCCCCCceeeccc-CCCCCCCCCCCceeccccccccC
Q 024980 201 NEPTYCVCHQVS--FGDMIACDNENCQGGEWFHYAC-VGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 201 ~~~~~C~C~~~~--~g~mi~Cd~~~C~~~~wfH~~C-vgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
..++||+|++++ .|.||+|| .|. -=.--.-. + -.......++|+||.|....+
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD--~C~-~WfH~~CVgi-~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECD--MCQ-DWFHGSCVGV-EEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECT--TTC-CEEEHHHHTC-CHHHHTTEEECCCHHHHHHHC
T ss_pred CCCeEEeCCCcCCCCCCeEEcC--CCC-cccccccCCc-CcccccCCCEEECCCCccccC
Confidence 468999999997 47999999 899 00000000 0 000001347999999987654
No 56
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.76 E-value=0.0077 Score=48.93 Aligned_cols=53 Identities=26% Similarity=0.644 Sum_probs=41.0
Q ss_pred CCCCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCC------CCCceecccccccc
Q 024980 200 PNEPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETR------FKGKWYCPTCRLLP 256 (259)
Q Consensus 200 ~~~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~------~~~~w~C~~C~~~~ 256 (259)
+.-..|| ||... |++|.|||+.|. .-|=..||.+.-.+. ..+.|.|--|...+
T Consensus 76 DG~~~yC~wC~~G--g~l~~Cdn~~C~--r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 76 DGYQSYCTICCGG--REVLMCGNNNCC--RCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp TSSBSSCTTTSCC--SEEEECSSTTTC--CEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CCCcceeeEecCC--CeEEeeCCCCCC--CchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 3446788 78764 799999999999 779999976544442 57899999998654
No 57
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=93.70 E-value=0.016 Score=53.55 Aligned_cols=52 Identities=21% Similarity=0.644 Sum_probs=40.2
Q ss_pred CCCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCC------CCCceecccccccc
Q 024980 201 NEPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETR------FKGKWYCPTCRLLP 256 (259)
Q Consensus 201 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~------~~~~w~C~~C~~~~ 256 (259)
.-..|| ||... |++|.|||+.|. .-|=..|+...-.+. ..+.|.|--|...+
T Consensus 91 G~~~yCr~C~~G--g~l~~Cdn~~C~--r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 91 GYQSYCSICCSG--ETLLICGNPDCT--RCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSBCSCTTTCCC--SSCEECCSTTCC--CEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCcccceEcCCC--CeEEEeCCCCCC--cchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 346788 78764 699999999999 678999987554442 45799999998654
No 58
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=93.51 E-value=0.048 Score=39.78 Aligned_cols=36 Identities=33% Similarity=0.661 Sum_probs=29.3
Q ss_pred CCCCCCCcceecCCCCCCCccccCCCCCCCCceeeccc
Q 024980 197 PIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYAC 234 (259)
Q Consensus 197 ~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~~wfH~~C 234 (259)
|-+-..-..++|++...|--|+|.+..|. .+||+.|
T Consensus 12 p~~R~~l~C~iC~~~~~GAciqC~~~~C~--~~fHv~C 47 (87)
T 2lq6_A 12 PPARWKLTCYLCKQKGVGASIQCHKANCY--TAFHVTC 47 (87)
T ss_dssp CCCCCCCCBTTTTBCCSSCEEECSCTTTC--CEEEHHH
T ss_pred ChHHhcCCCcCCCCCCCcEeEecCCCCCC--CcCcHHH
Confidence 33445455668988778999999999999 9999999
No 59
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.59 E-value=0.12 Score=37.45 Aligned_cols=47 Identities=23% Similarity=0.670 Sum_probs=34.3
Q ss_pred ce-ecCCCCCCCccccCCCCCCCCceeecccCC---CCCCC---------CCCCceeccccccc
Q 024980 205 YC-VCHQVSFGDMIACDNENCQGGEWFHYACVG---LTPET---------RFKGKWYCPTCRLL 255 (259)
Q Consensus 205 ~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvg---l~~~~---------~~~~~w~C~~C~~~ 255 (259)
.| +|++...+.|+.|. .|. .-||..|+- .-..+ ....-|.|+.|..+
T Consensus 17 ~C~VC~~~t~~~l~pCR--vC~--RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 17 MCDVCEVWTAESLFPCR--VCT--RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCTTTCCCCSSCCSSCS--SSS--SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred ccCccccccccceeccc--ccc--ccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 36 79888889999999 999 679999942 11111 13668999999643
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.11 E-value=0.035 Score=37.52 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=30.6
Q ss_pred CCcce-ecCCCCCCCcc-ccCCCCCCC-CceeecccCCCCCCCCCCCceeccccccccC
Q 024980 202 EPTYC-VCHQVSFGDMI-ACDNENCQG-GEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi-~Cd~~~C~~-~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
+...| ||.....+.+| -|. |.| +.|||.+|+--=-.. .+++.||.|+....
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~---C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACG---CTGELENVHRSCLSTWLTI--SRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCC---CSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcC---CCCchhhhHHHHHHHHHHh--CCCCccCCCCCeee
Confidence 34456 78765444333 354 651 259999998421111 45789999987644
No 61
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=86.08 E-value=8.4 Score=28.34 Aligned_cols=96 Identities=14% Similarity=0.253 Sum_probs=66.6
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCCCCc-hHHHHHHHHHHHHHHHHH
Q 024980 9 YVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGL-ASQGNKKGNGNEE-DEAIEKMRKEIEVNQDNA 86 (259)
Q Consensus 9 yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~I~~~~~~~ 86 (259)
-+|+.++.+-.|..+..|.=..|..+|.+...-...|+...+-+... ++ +.+ ......+..+|.+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~--------lQqh~aRlnsqQrQI~ENhkEM 78 (114)
T 2xzr_A 7 KIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRT--------LQQHSARLDSQQRQINENHKEM 78 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHH--------HHHHHHHHHhHHHHHHHHHHHH
Confidence 46889999999999999999999999999876655554332222100 00 000 112345667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 87 LSLCTEKVLLARQAYDIIDSHIKRLDE 113 (259)
Q Consensus 87 ~~lsdEKv~LA~q~~dlVdrhirrLD~ 113 (259)
.++.+.--+|+...|- +++-+.||..
T Consensus 79 Kq~aaqsaaLlsk~yh-~ene~ar~kk 104 (114)
T 2xzr_A 79 KQIEDKIEEILSKIYH-IENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHHH
Confidence 9999999899998885 3445555543
No 62
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=84.18 E-value=21 Score=32.96 Aligned_cols=102 Identities=10% Similarity=0.120 Sum_probs=53.5
Q ss_pred HHHHHHHhhC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCchH-----HHHHHHHHHHHHH
Q 024980 10 VDDYLEYAST-LPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDE-----AIEKMRKEIEVNQ 83 (259)
Q Consensus 10 Ledfle~ie~-LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~I~~~~ 83 (259)
|.+||...+. +|.+|+..-..+++++....++ .++.+.++..-.+... +..+.. ...++..+|.+.
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v----~~Lvk~iq~~~~~~Q~---~~~d~~e~~tq~skkml~~~~~~- 96 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSI----EYLIQHIKTIYPSEKQ---TLPQSIEQLTQKSKKIIEEIIRY- 96 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHSCSSTT---CCSSCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccccC---CCCCchhhHHHHHHHHHHHHHHH-
Confidence 6777777765 7888877777777766555443 3444444333222111 111111 112333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 84 DNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFA 119 (259)
Q Consensus 84 ~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~ 119 (259)
+..+.-.++.|...+..+...+..|..|...+..++
T Consensus 97 e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 97 ENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444555666666666666677777776665544
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.75 E-value=29 Score=33.06 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024980 99 QAYDIIDSHIKRLDEDLN 116 (259)
Q Consensus 99 q~~dlVdrhirrLD~dl~ 116 (259)
..++-+-..|+|||.||.
T Consensus 138 snLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344555555553
No 64
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.07 E-value=5.1 Score=28.87 Aligned_cols=49 Identities=31% Similarity=0.710 Sum_probs=36.6
Q ss_pred CcceecCCCC--C---C--CccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccccC
Q 024980 203 PTYCVCHQVS--F---G--DMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 203 ~~~C~C~~~~--~---g--~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
..-|+|.+.- . | +||-|. .|. -.=-|..|..+... ...|.|..|....+
T Consensus 26 A~~Clc~~GR~~~~~~~~W~L~lC~--~Cg-s~gtH~~Cs~l~~~---~~~weC~~C~~v~~ 81 (85)
T 1weq_A 26 APICLYEQGRDSFEDEGRWRLILCA--TCG-SHGTHRDCSSLRPN---SKKWECNECLPASG 81 (85)
T ss_dssp CSCCCSTTCSSCCBSSSTTBCEECS--SSC-CCEECSGGGTCCTT---CSCCCCTTTSCCSS
T ss_pred ccccCCCCCcccccCCCCEEEEeCc--ccC-CchhHHHHhCCcCC---CCCEECCcCccccC
Confidence 3458886542 2 2 799999 898 77799999998653 44999999986543
No 65
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=70.03 E-value=2.9 Score=28.96 Aligned_cols=34 Identities=21% Similarity=0.625 Sum_probs=21.9
Q ss_pred CCccccCCCCCCCCceeecccCCCCCCCCCCCceeccc
Q 024980 214 GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPT 251 (259)
Q Consensus 214 g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~ 251 (259)
...|+||++.|. -|=-+. .++.... ..++|||..
T Consensus 16 ~~WVQCd~p~C~--KWR~LP-~~~~~~~-lpd~W~C~m 49 (69)
T 2e61_A 16 LVWVQCSFPNCG--KWRRLC-GNIDPSV-LPDNWSCDQ 49 (69)
T ss_dssp CCEEECSSTTTC--CEEECC-SSCCTTT-SCTTCCGGG
T ss_pred CeEEEeCccccC--cccCCc-ccccccc-CCCcCEeCC
Confidence 468999999999 885542 2222111 246999963
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.65 E-value=16 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=19.9
Q ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 17 ASTLPAELQRLLNTIRELDERSHSMINQTRQQT 49 (259)
Q Consensus 17 ie~LP~El~r~l~~IreLD~~~~~~~~~l~~~~ 49 (259)
|-.|-..|++...+||..|....++..+|.+..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd 53 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKD 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666777777766666665555443
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=65.04 E-value=2.1 Score=39.06 Aligned_cols=51 Identities=24% Similarity=0.486 Sum_probs=30.2
Q ss_pred Ccce-ecCCCC--CCCc--cccCCCCCCCCceeecccCC-------CCCCCCCCCceeccccccc
Q 024980 203 PTYC-VCHQVS--FGDM--IACDNENCQGGEWFHYACVG-------LTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 203 ~~~C-~C~~~~--~g~m--i~Cd~~~C~~~~wfH~~Cvg-------l~~~~~~~~~w~C~~C~~~ 255 (259)
..-| ||=... .|.+ ..|+|+.|. -=||..|+- -+...=..-.--||.|+..
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~--h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCV--LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCC--CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CccCcccceeecCCCCCccccccCCccC--CccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 4445 675443 2433 469999999 459999982 1111101223569999864
No 68
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.10 E-value=28 Score=33.11 Aligned_cols=50 Identities=10% Similarity=0.228 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 74 KMRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLK 123 (259)
Q Consensus 74 ~~~~~I~~~~~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~L~ 123 (259)
..+.+|.+.+++-+..-++||.---+...++..-|+.+=.+|++||-++.
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666677765556667788888888888888886543
No 69
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=58.90 E-value=32 Score=25.18 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=15.0
Q ss_pred HhhCChHHHH--HHHHHHHHHHHHHHHH
Q 024980 16 YASTLPAELQ--RLLNTIRELDERSHSM 41 (259)
Q Consensus 16 ~ie~LP~El~--r~l~~IreLD~~~~~~ 41 (259)
+.++||.|=+ ++...|.+|...++..
T Consensus 7 d~s~LPpeqRkkkL~~Ki~el~~ei~ke 34 (98)
T 2ke4_A 7 DFSHLPPEQQRKRLQQQLEERSRELQKE 34 (98)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999944 4445555555444433
No 70
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.83 E-value=1.2e+02 Score=27.70 Aligned_cols=25 Identities=8% Similarity=0.104 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 28 LNTIRELDERSHSMINQTRQQTKYC 52 (259)
Q Consensus 28 l~~IreLD~~~~~~~~~l~~~~k~~ 52 (259)
|..+.+.|..+.++..+|+++..||
T Consensus 101 ~~q~~dndn~~~e~s~eLe~~i~~l 125 (390)
T 1deq_A 101 FAKANNNDNTFKQINEDLRSRIEIL 125 (390)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333
No 71
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=55.15 E-value=52 Score=25.96 Aligned_cols=43 Identities=2% Similarity=-0.004 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 77 KEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFA 119 (259)
Q Consensus 77 ~~I~~~~~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~ 119 (259)
.++...+..+.....+-+.-+...++-..+...|+..--++++
T Consensus 99 ~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 99 RQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444444333
No 72
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.07 E-value=9.1 Score=28.62 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=29.0
Q ss_pred CCCCcce---ecCCCCCCCccccCCCCCCCCceeecccCC--CCCCCCCCCceec
Q 024980 200 PNEPTYC---VCHQVSFGDMIACDNENCQGGEWFHYACVG--LTPETRFKGKWYC 249 (259)
Q Consensus 200 ~~~~~~C---~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvg--l~~~~~~~~~w~C 249 (259)
|...+|| .|....-..-+.|. .|+ .=||..|+. |...+ .+.|+|
T Consensus 50 P~g~W~Cp~c~C~~C~k~~~~~C~--~Cp--~sfC~~c~~g~l~~~~--~~~~~c 98 (107)
T 4gne_A 50 PYGKWECPWHQCDECSSAAVSFCE--FCP--HSFCKDHEKGALVPSA--LEGRLC 98 (107)
T ss_dssp CSSCCCCGGGBCTTTCSBCCEECS--SSS--CEECTTTCTTSCEECT--TTTCEE
T ss_pred CCCCEECCCCCCCcCCCCCCcCcC--CCC--cchhhhccCCcceecC--CCCcee
Confidence 3446777 34333322237899 999 679999987 34445 789997
No 73
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=52.58 E-value=6.2 Score=24.69 Aligned_cols=42 Identities=31% Similarity=0.526 Sum_probs=24.8
Q ss_pred ecCCCCC-CC-ccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 207 VCHQVSF-GD-MIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 207 ~C~~~~~-g~-mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
+|..... ++ .+... .|. -.||..|+.--- .....||.|+...
T Consensus 10 IC~~~~~~~~~~~~~~--~C~--H~f~~~Ci~~w~----~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 10 VCLAELEDGEEARFLP--RCG--HGFHAECVDMWL----GSHSTCPLCRLTV 53 (55)
T ss_dssp TTCCCCCTTSCCEECS--SSC--CEECTTHHHHTT----TTCCSCSSSCCCS
T ss_pred cCCccccCCCceEECC--CCC--CcccHHHHHHHH----HcCCcCcCCCCEe
Confidence 7766542 32 23222 477 569999984221 2245799998653
No 74
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.53 E-value=29 Score=20.86 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 71 AIEKMRKEIEVNQDNALSLCTEKVLLAR 98 (259)
Q Consensus 71 ~~~~~~~~I~~~~~~~~~lsdEKv~LA~ 98 (259)
...+...+|...-.+...|.+||.+|--
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777889899999999999988743
No 75
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.98 E-value=17 Score=24.00 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=28.8
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
+...| +|.......++ . .|. -.||..|+.--... ..+...||.|+...
T Consensus 19 ~~~~C~IC~~~~~~~~~-~---~Cg--H~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQKPVT-I---DCG--HNFCLKCITQIGET-SCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSSEEE-C---TTC--CEEEHHHHHHHCSS-SCSCCCCSSSCCCC
T ss_pred cCCEeccCCcccCCeEE-c---CCC--ChhhHHHHHHHHHc-CCCCCCCCCCCCcC
Confidence 34556 78776544222 2 377 44999998522211 13467899998654
No 76
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.83 E-value=16 Score=24.51 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=26.2
Q ss_pred Ccce-ecCCCCC-CCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 203 PTYC-VCHQVSF-GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 203 ~~~C-~C~~~~~-g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
...| +|..... +..+.-- .|. -.||..|+.--- .....||.|+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~--~C~--H~fc~~Ci~~~~----~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQL--PCN--HLFHDSCIVPWL----EQHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEEC--TTS--CEEETTTTHHHH----TTTCSCTTTCCCC
T ss_pred CCCCeeCCccccCCCCEEEe--CCC--CeecHHHHHHHH----HcCCcCcCcCCcc
Confidence 3345 7877653 2222222 377 459999984211 1235799998654
No 77
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.86 E-value=72 Score=22.05 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 83 QDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLK 123 (259)
Q Consensus 83 ~~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~L~ 123 (259)
++.+++..+|.+..=.......++.+...|..+..|..+|.
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666677777777777777777776664
No 78
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=45.34 E-value=6.5 Score=25.95 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=26.2
Q ss_pred Ccce-ecCCCCC-CCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 203 PTYC-VCHQVSF-GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 203 ~~~C-~C~~~~~-g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
...| +|..... +..+..- .|. -.||..|+.---. ....||.|+...
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~--~C~--H~fc~~Ci~~~~~----~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRL--PCM--HLFHQVCVDQWLI----TNKKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEEC--TTS--CEEEHHHHHHHHH----HCSBCTTTCSBS
T ss_pred CCCCeeCCccccCCCcEEEe--CCC--CHHHHHHHHHHHH----cCCCCcCcCccc
Confidence 3445 7876643 3333333 488 4599999842111 123599998653
No 79
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=43.44 E-value=9.1 Score=22.12 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=9.7
Q ss_pred CCceeccccccc
Q 024980 244 KGKWYCPTCRLL 255 (259)
Q Consensus 244 ~~~w~C~~C~~~ 255 (259)
.|.|.|+.|...
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 689999999643
No 80
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.54 E-value=4.6 Score=27.31 Aligned_cols=47 Identities=30% Similarity=0.505 Sum_probs=28.0
Q ss_pred Ccce-ecCCCCC-CCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccccC
Q 024980 203 PTYC-VCHQVSF-GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 203 ~~~C-~C~~~~~-g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
...| +|..... +..+..- .|. -.||..|+.--- .....||.|+....
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l--~C~--H~fh~~Ci~~w~----~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVL--PCN--HEFHAKCVDKWL----KANRTCPICRADSG 71 (75)
T ss_dssp CCEETTTTEECCBTCEEEEE--TTT--EEEETTHHHHHH----HHCSSCTTTCCCCC
T ss_pred CCCCeECCcccCCCCeEEEE--CCC--CHhHHHHHHHHH----HcCCcCcCcCCcCC
Confidence 4446 8877653 4444444 377 459999984211 11347999986543
No 81
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=40.07 E-value=7.7 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 223 NCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 223 ~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
.|. -.||..|+.--- ...-.||.|+..
T Consensus 83 ~C~--H~FH~~CI~~Wl----~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCN--HAFHFHCISRWL----KTRQVCPLDNRE 109 (117)
T ss_dssp ---------------------------------
T ss_pred CcC--ceEcHHHHHHHH----HcCCcCCCCCCe
Confidence 466 449999983211 224579999875
No 82
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=40.03 E-value=8.9 Score=32.66 Aligned_cols=45 Identities=27% Similarity=0.702 Sum_probs=30.5
Q ss_pred Ccce-ecCCCC-CCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 203 PTYC-VCHQVS-FGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 203 ~~~C-~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
...| +|+..- .| +.|.+ |. .-||..|+.--... .+.--||.|...
T Consensus 180 i~~C~iC~~iv~~g--~~C~~--C~--~~~H~~C~~~~~~~--~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCET--CG--IRMHLPCVAKYFQS--NAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSS--SC--CEECHHHHHHHTTT--CSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCC--cccCc--cC--hHHHHHHHHHHHHh--CCCCCCCCCCCC
Confidence 4456 898875 45 78984 99 55899999532222 345579999753
No 83
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.40 E-value=2.2e+02 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 024980 74 KMRKEIEVNQDNALSLCTEKVL---LARQAYDIIDSHIKRLDEDL 115 (259)
Q Consensus 74 ~~~~~I~~~~~~~~~lsdEKv~---LA~q~~dlVdrhirrLD~dl 115 (259)
++...++..+.-+++--++.|. +-+..++-+-..|+|||.+|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433 22222222334567777666
No 84
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=37.74 E-value=8.5 Score=27.05 Aligned_cols=34 Identities=35% Similarity=0.831 Sum_probs=25.0
Q ss_pred CccccCCCCCCCCceeecccCCCCCCC-----CCCCceeccc
Q 024980 215 DMIACDNENCQGGEWFHYACVGLTPET-----RFKGKWYCPT 251 (259)
Q Consensus 215 ~mi~Cd~~~C~~~~wfH~~Cvgl~~~~-----~~~~~w~C~~ 251 (259)
-||.|.+- . .-|.|..|..+.+.- .+..++||.+
T Consensus 37 ami~cs~g--~-ghwvhaqcm~l~e~~l~~lsq~n~ky~c~~ 75 (82)
T 2jwo_A 37 AMIYCSHG--D-GHWVHAQCMDLEERTLIHLSEGSNKYYCNE 75 (82)
T ss_dssp CCEECCSS--S-CCEECSGGGTCCHHHHHHHTTSSCCCCCST
T ss_pred hhhhcCCC--c-chHHHHHHhhHHHHHHHHHhcCCcEEEEcC
Confidence 49999853 3 599999999987642 1456888875
No 85
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.48 E-value=31 Score=21.79 Aligned_cols=41 Identities=17% Similarity=0.430 Sum_probs=25.5
Q ss_pred CCcce-ecCCCCCC-CccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSFG-DMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~g-~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
+...| +|...... -++. |.| -|+..|+.- ....||.|+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~-----CgH--~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLP-----CLH--TLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCBCCSCST-----TSC--CSBTTTCSS-------SSSSCSSCCSSS
T ss_pred cCCCceEeCCccCCeEEcC-----CCC--cccHHHHcc-------CCCCCCcCCcEe
Confidence 44556 78776543 2333 552 388899843 245799998654
No 86
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=37.28 E-value=6.8 Score=26.49 Aligned_cols=46 Identities=17% Similarity=0.514 Sum_probs=28.1
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
...| +|.......++ -. .|. -.||..|+.---.. .+...||.|+..
T Consensus 15 ~~~C~IC~~~~~~p~~-~~--~Cg--H~fC~~Ci~~~~~~--~~~~~CP~Cr~~ 61 (74)
T 2yur_A 15 ELLCLICKDIMTDAVV-IP--CCG--NSYCDECIRTALLE--SDEHTCPTCHQN 61 (74)
T ss_dssp GGSCSSSCCCCTTCEE-CS--SSC--CEECTTHHHHHHHH--SSSSCCSSSCCS
T ss_pred CCCCcCCChHHhCCeE-cC--CCC--CHHHHHHHHHHHHh--cCCCcCCCCCCc
Confidence 4556 88777654333 22 477 56999998422222 235689999875
No 87
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.50 E-value=20 Score=24.13 Aligned_cols=49 Identities=29% Similarity=0.635 Sum_probs=28.8
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCC--CCCCCCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGL--TPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl--~~~~~~~~~w~C~~C~~~~ 256 (259)
+...| +|.......++ . .|. -.||..|+.- .......+...||.|+...
T Consensus 18 ~~~~C~IC~~~~~~p~~-~---~Cg--H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS-A---DCN--HSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCSSCEE-C---TTS--CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhhCccee-C---CCC--CHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 34556 78777544332 2 377 3499999742 1111113578999998654
No 88
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.42 E-value=1.6e+02 Score=23.29 Aligned_cols=90 Identities=13% Similarity=0.219 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 20 LPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQ 99 (259)
Q Consensus 20 LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~lsdEKv~LA~q 99 (259)
+-.+|-|.-........++.++..++......++.+- .......+-...|..-++...+|+.-|..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE--------------~seekasqrEd~yEeqIk~L~~kLKEAE~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLE--------------AQAEKYSQKEDKYEEEIKVLSDKLKEAET 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666555554444333221 11122223345566666677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 100 AYDIIDSHIKRLDEDLNNFAEDLK 123 (259)
Q Consensus 100 ~~dlVdrhirrLD~dl~~~~~~L~ 123 (259)
-++...|.+.+|+..+..++..|.
T Consensus 92 RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777654
No 89
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.12 E-value=8.3 Score=27.01 Aligned_cols=48 Identities=25% Similarity=0.607 Sum_probs=26.8
Q ss_pred ce-ecCCCCC--CCccc-cCCCCCCC-CceeecccCCCCCCCCCCCceeccccccccC
Q 024980 205 YC-VCHQVSF--GDMIA-CDNENCQG-GEWFHYACVGLTPETRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 205 ~C-~C~~~~~--g~mi~-Cd~~~C~~-~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~~ 257 (259)
.| ||..... +.+|. |. |.| .-|||..|+--=-.. .+...||.|+....
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~---C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCH---CTGSLHFVHQACLQQWIKS--SDTRCCELCKYEFI 69 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSS---CCSSSCCEETTHHHHHHHH--HCCSBCSSSCCBCC
T ss_pred CCeEcCccccCCCeeEeccc---cCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCeee
Confidence 35 7765542 34442 44 431 268999998311111 23468999986543
No 90
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=35.84 E-value=15 Score=24.80 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
+...| +|..+....++ . .|. -.|+..|+.--- ..+...||.|+...
T Consensus 7 ~~~~C~IC~~~~~~Pv~-~---~Cg--H~fc~~Ci~~~~---~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVI-V---STG--QTYERSSIQKWL---DAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCSSEEE-E---TTT--EEEEHHHHHHHH---TTTCCBCTTTCCBC
T ss_pred ccCCCCCccccccCCEE-c---CCC--CeecHHHHHHHH---HHCcCCCCCCcCCC
Confidence 35667 78887654333 2 377 669999984211 13467899998654
No 91
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=34.58 E-value=13 Score=24.84 Aligned_cols=47 Identities=34% Similarity=0.733 Sum_probs=32.1
Q ss_pred ce-ecCCCCCCCcc--ccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 205 YC-VCHQVSFGDMI--ACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 205 ~C-~C~~~~~g~mi--~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
.| +|+...|-+=+ -|. .|. .-|=..|-|-......+..|.|..|+.+
T Consensus 11 ~C~iC~KTKFADG~Gh~C~--yCk--~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 11 TCGICHKTKFADGCGHNCS--YCQ--TKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCSSSSCSCCCSSCCEEBT--TTC--CEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred hhhhhccceeccCCCcccc--ccC--CeeecccCCEeeecCCeEEEEehhhhhc
Confidence 45 89998764333 377 688 5577788664443434779999999864
No 92
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.19 E-value=27 Score=23.04 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=26.3
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
...| +|...... .+... |. -.||..|+.--. .....||.|+...
T Consensus 15 ~~~C~IC~~~~~~-~~~~~---Cg--H~fC~~Ci~~~~----~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCVH-PVSLP---CK--HVFCYLCVKGAS----WLGKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCSS-EEEET---TT--EEEEHHHHHHCT----TCSSBCSSSCCBC
T ss_pred CCCCccCCcccCC-CEEcc---CC--CHHHHHHHHHHH----HCCCcCcCcCchh
Confidence 3446 78776533 23332 77 449999984221 1236899998653
No 93
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.66 E-value=26 Score=24.41 Aligned_cols=33 Identities=30% Similarity=0.887 Sum_probs=25.6
Q ss_pred CCcce-ecCCCCCC---CccccCCCCCCCCceeecccCCCC
Q 024980 202 EPTYC-VCHQVSFG---DMIACDNENCQGGEWFHYACVGLT 238 (259)
Q Consensus 202 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~~wfH~~Cvgl~ 238 (259)
.++|| +|+..-+| .-+.|. .|. + -+|-.|+...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~--~C~-~-~~Hk~C~~~v 63 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCR--QCN-A-AIHKKCIDKI 63 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEET--TTC-C-EECTTGGGTC
T ss_pred CCcChhhcChhhccccccccccC--CcC-C-eeChhhhhhC
Confidence 47888 79888776 467799 899 4 4999998753
No 94
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=33.65 E-value=34 Score=22.56 Aligned_cols=33 Identities=30% Similarity=0.748 Sum_probs=25.5
Q ss_pred CCcce-ecCCCCCC---CccccCCCCCCCCceeecccCCCC
Q 024980 202 EPTYC-VCHQVSFG---DMIACDNENCQGGEWFHYACVGLT 238 (259)
Q Consensus 202 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~~wfH~~Cvgl~ 238 (259)
.+++| .|+..-+| .-..|. .|. + -+|-.|+...
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~--~C~-~-~~Hk~C~~~v 58 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCD--ACG-M-NVHHRCQTKV 58 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEES--SSC-C-EECTTTTTTS
T ss_pred CCcCchhcChhheecCCcccccC--CCC-C-ccCHhHHhhC
Confidence 47888 79888776 456799 899 4 4999998653
No 95
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=33.50 E-value=6.9 Score=30.84 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=28.6
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
...| +|...... .+.+- .|. -+||..|+.---. .+...||.|+...
T Consensus 54 ~~~C~IC~~~~~~-p~~~~--~Cg--H~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTK--ECL--HRFCADCIITALR---SGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS-EEEET--TTC--CEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC-cCEeC--CCC--ChhHHHHHHHHHH---hCcCCCCCCCCcC
Confidence 4556 78776544 33443 477 5799999842111 2356799998653
No 96
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.63 E-value=42 Score=21.88 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=14.5
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 024980 10 VDDYLEYASTLPAELQRLLNTIRELDERSHSM 41 (259)
Q Consensus 10 Ledfle~ie~LP~El~r~l~~IreLD~~~~~~ 41 (259)
+++||+.|. .++.....++.+|..+...+
T Consensus 25 VD~FLd~v~---~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 25 VNEFLAQVR---KDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 466666543 34555555555555554443
No 97
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=32.57 E-value=25 Score=24.27 Aligned_cols=34 Identities=32% Similarity=0.916 Sum_probs=26.0
Q ss_pred CCCcce-ecCCCCCC---CccccCCCCCCCCceeecccCCCC
Q 024980 201 NEPTYC-VCHQVSFG---DMIACDNENCQGGEWFHYACVGLT 238 (259)
Q Consensus 201 ~~~~~C-~C~~~~~g---~mi~Cd~~~C~~~~wfH~~Cvgl~ 238 (259)
..++|| +|+..-+| .-+.|. .|. --+|-.|+...
T Consensus 32 ~~pt~C~~C~~~lwGl~kqG~~C~--~C~--~~~Hk~C~~~v 69 (77)
T 2enn_A 32 PQPTFCSVCHEFVWGLNKQGYQCR--QCN--AAIHKKCIDKV 69 (77)
T ss_dssp SSCEECSSSCCEECCTTCCEEECS--SSC--CEEESGGGSSC
T ss_pred CCCcCccccChhhccccccccCcC--CCC--CcCCHhHHhhC
Confidence 358899 79888765 456799 899 45999998653
No 98
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=32.45 E-value=22 Score=21.97 Aligned_cols=33 Identities=27% Similarity=0.755 Sum_probs=25.1
Q ss_pred CCcce-ecCCCCCC---CccccCCCCCCCCceeecccCCCC
Q 024980 202 EPTYC-VCHQVSFG---DMIACDNENCQGGEWFHYACVGLT 238 (259)
Q Consensus 202 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~~wfH~~Cvgl~ 238 (259)
.+++| .|+..-+| .-..|. .|. + -+|-.|+...
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~--~C~-~-~~H~~C~~~v 46 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCE--DCG-M-NVHHKCREKV 46 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEET--TTC-C-EECHHHHTTS
T ss_pred CCCCcCCCCceeeccCCccCEeC--CCC-C-eECHHHhhhc
Confidence 47788 68888776 567899 899 4 4999998643
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.38 E-value=2.9e+02 Score=25.05 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 73 EKMRKEIEVNQDNALSLCTEKVLLARQA 100 (259)
Q Consensus 73 ~~~~~~I~~~~~~~~~lsdEKv~LA~q~ 100 (259)
.++...|.+..++.+++-..|-.||.|+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 459 GEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 3444556666666666666666666553
No 100
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=32.37 E-value=9.5 Score=26.94 Aligned_cols=46 Identities=28% Similarity=0.647 Sum_probs=27.2
Q ss_pred Ccce-ecCCCC-CCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 203 PTYC-VCHQVS-FGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 203 ~~~C-~C~~~~-~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
...| +|.... .+..+..- .|. -.||..|+.--- .....||.|+...
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l--~C~--H~Fh~~Ci~~wl----~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATEL--PCH--HYFHKPCVSIWL----QKSGTCPVCRCMF 87 (91)
T ss_dssp CSEETTTTEECCTTCEEEEE--TTT--EEEEHHHHHHHH----TTTCBCTTTCCBS
T ss_pred CCCCcccChhhcCCCcEEec--CCC--ChHHHHHHHHHH----HcCCcCcCcCccC
Confidence 4456 887664 34433323 377 569999984211 1234899998653
No 101
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=32.30 E-value=2e+02 Score=23.21 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhhCChHHHHHHH--HHH-HHHHHHHHHHHHHHHHH
Q 024980 6 TGVYVDDYLEYASTLPAELQRLL--NTI-RELDERSHSMINQTRQQ 48 (259)
Q Consensus 6 ~~~yLedfle~ie~LP~El~r~l--~~I-reLD~~~~~~~~~l~~~ 48 (259)
....+-+|++.+.+-=.+++..| +.+ ++++....+.+..+...
T Consensus 29 v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~ 74 (191)
T 1nfn_A 29 ALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAY 74 (191)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888888888 777 88888888877777654
No 102
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=31.95 E-value=1.1e+02 Score=19.99 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=29.2
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 18 STLPAELQRLLNTIRELDERSHSMINQTRQQTKYCL 53 (259)
Q Consensus 18 e~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~~ 53 (259)
-.||.+=.|.|-+||.|=...|.+..++.-..+.+.
T Consensus 23 C~~P~~~~rTLLEi~KL~LEIQKL~~EL~glskefl 58 (65)
T 2yf2_A 23 CHVPTEDVKTLLEIRKLFLEIQKLKVELQGLSKEFL 58 (65)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHH
Confidence 379999999999999999999988888877665433
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.40 E-value=3.2e+02 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 20 LPAELQRLLNTIRELDERSHSMINQTRQQT 49 (259)
Q Consensus 20 LP~El~r~l~~IreLD~~~~~~~~~l~~~~ 49 (259)
|=.++...=.+|+.|..+.....+.+....
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~ 483 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLH 483 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444444333
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.19 E-value=1.6e+02 Score=21.97 Aligned_cols=41 Identities=2% Similarity=0.109 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 83 QDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLK 123 (259)
Q Consensus 83 ~~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~L~ 123 (259)
..+|.++-++|+..+....+-+.+-+.++...+..+...|.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888889888888888888888888888877766654
No 105
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.98 E-value=16 Score=21.25 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=9.7
Q ss_pred CCceeccccccc
Q 024980 244 KGKWYCPTCRLL 255 (259)
Q Consensus 244 ~~~w~C~~C~~~ 255 (259)
.|.|.|+.|.-.
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 678999999644
No 106
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.90 E-value=1.1e+02 Score=19.92 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 024980 86 ALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQEGKIP 129 (259)
Q Consensus 86 ~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~L~~~~~~~ 129 (259)
..+|-.-+++||.++..| +-.....|+++..+...|.+-|.++
T Consensus 13 ~~kLKq~n~~L~~kv~~L-e~~c~e~eQEieRL~~LLkqHgl~~ 55 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHL-EFSCSEKEQEIERLNKLLRQHGLLG 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 445666678888888877 7777888899999888888776553
No 107
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.79 E-value=9.3 Score=26.14 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=27.7
Q ss_pred CCCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 201 NEPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 201 ~~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
++...| +|.......++ - .|. -.||..|+.--. .....||.|+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~--~--~Cg--H~fC~~Ci~~~~----~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV--T--KCR--HYFCESCALEHF----RATPRCYICDQPT 59 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE--C--TTS--CEEEHHHHHHHH----HHCSBCSSSCCBC
T ss_pred CCCCCCcCCCchhcCeeE--c--cCC--CHhHHHHHHHHH----HCCCcCCCcCccc
Confidence 345567 78777644332 2 477 569999983211 1145799998653
No 108
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.74 E-value=41 Score=23.58 Aligned_cols=33 Identities=33% Similarity=0.801 Sum_probs=25.6
Q ss_pred CCcce-ecCCCCCC---CccccCCCCCCCCceeecccCCCC
Q 024980 202 EPTYC-VCHQVSFG---DMIACDNENCQGGEWFHYACVGLT 238 (259)
Q Consensus 202 ~~~~C-~C~~~~~g---~mi~Cd~~~C~~~~wfH~~Cvgl~ 238 (259)
.+++| +|+..-+| .-+.|. .|. + -+|-.|+...
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~--~C~-~-~~Hk~C~~~v 63 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCD--TCD-M-NVHKQCVINV 63 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECS--SSC-C-EEETTTTTTS
T ss_pred CCcCCcccCccccccccCCCcCC--CcC-C-ccCHhHHhhc
Confidence 47888 79888776 456799 899 4 4999998753
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=30.66 E-value=11 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=20.4
Q ss_pred CCCCCceeecccCCCCCC-CCCCCceeccccccccC
Q 024980 223 NCQGGEWFHYACVGLTPE-TRFKGKWYCPTCRLLPQ 257 (259)
Q Consensus 223 ~C~~~~wfH~~Cvgl~~~-~~~~~~w~C~~C~~~~~ 257 (259)
.|. -+||..|+.---. ........||.|+...+
T Consensus 60 ~C~--H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 60 KCS--HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SSC--CEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCC--CcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 477 5699999851110 00134668999997654
No 110
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=30.63 E-value=21 Score=24.62 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 17 ASTLPAELQRLLNTIRELDERSHSMINQT 45 (259)
Q Consensus 17 ie~LP~El~r~l~~IreLD~~~~~~~~~l 45 (259)
|++||.+|+..+.-|=+-|-.......++
T Consensus 9 L~~LP~~Lq~kV~aIV~~~PsSl~VF~~L 37 (70)
T 2lh0_A 9 LDELPESLSRKIGTVVRVLPSSLEIFEEL 37 (70)
T ss_dssp GGGSCHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhCccHHHHHHHH
Confidence 78999999999888888887777765555
No 111
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=30.62 E-value=1.5e+02 Score=21.38 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 93 KVLLARQAYDIIDSHIKRLDEDLNNFAEDL 122 (259)
Q Consensus 93 Kv~LA~q~~dlVdrhirrLD~dl~~~~~~L 122 (259)
.-.+-...-..+...+|.--.+|.+++.++
T Consensus 72 ~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 72 LRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333334444555555556666555543
No 112
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.37 E-value=13 Score=25.12 Aligned_cols=48 Identities=25% Similarity=0.547 Sum_probs=27.9
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCC--CCCCceecccccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPET--RFKGKWYCPTCRLLP 256 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~--~~~~~w~C~~C~~~~ 256 (259)
...| +|.......++ . .|. -.||..|+.---.. ...+...||.|+...
T Consensus 19 ~~~C~IC~~~~~~p~~-~---~Cg--H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 19 EVTCPICLELLTQPLS-L---DCG--HSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCTTTCSCCSSCBC-C---SSS--CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCcccCCcee-C---CCC--CHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 4556 78877544332 2 377 45999998421100 013467899998654
No 113
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.07 E-value=18 Score=25.09 Aligned_cols=44 Identities=25% Similarity=0.701 Sum_probs=27.8
Q ss_pred ce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 205 YC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 205 ~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
.| +|....... +.|. .|. -=||..|+.---.. ...-.||.|+..
T Consensus 17 ~C~IC~~~i~~g-~~C~--~C~--h~fH~~Ci~kWl~~--~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 17 ICNICHSLLIQG-QSCE--TCG--IRMHLPCVAKYFQS--NAEPRCPHCNDY 61 (74)
T ss_dssp BCSSSCCBCSSS-EECS--SSC--CEECHHHHHHHSTT--CSSCCCTTTCSC
T ss_pred cCcchhhHcccC-CccC--CCC--chhhHHHHHHHHHh--cCCCCCCCCcCc
Confidence 35 888876421 4676 798 45999998611111 223569999864
No 114
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=29.98 E-value=14 Score=30.40 Aligned_cols=44 Identities=25% Similarity=0.850 Sum_probs=26.9
Q ss_pred Ccce-ecCCCCCCCccccCCCCCC----------------CCceeecccCCCCCCCCCCCceeccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQ----------------GGEWFHYACVGLTPETRFKGKWYCPTCR 253 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~----------------~~~wfH~~Cvgl~~~~~~~~~w~C~~C~ 253 (259)
..+| +|+++ |+||.|| .|+ -..||=..|+...... ...-|+.+.
T Consensus 7 ~~~C~~C~~~--g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~~---~~~~c~~~~ 67 (207)
T 3u5n_A 7 EDWCAVCQNG--GDLLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPE---VEYDCDNLQ 67 (207)
T ss_dssp CSSBTTTCCC--EEEEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCS---SCCSCC---
T ss_pred CCCCCCCCCC--CceEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCccccc---ccccccccc
Confidence 3456 78865 6899999 563 1359999998665432 234565553
No 115
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=29.85 E-value=3.5e+02 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 87 LSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAED 121 (259)
Q Consensus 87 ~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~ 121 (259)
..-...-|..-+.+++.+.+.|.+|+..+..+++.
T Consensus 158 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 158 NSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33456678888889999999999999999876553
No 116
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.63 E-value=4.8e+02 Score=26.86 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024980 84 DNALSLCTEKVLLARQAYDII 104 (259)
Q Consensus 84 ~~~~~lsdEKv~LA~q~~dlV 104 (259)
.++..|.+|+-.|-+|+-+|-
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655555554
No 117
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.49 E-value=1.6e+02 Score=21.28 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 6 TGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQT 45 (259)
Q Consensus 6 ~~~yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l 45 (259)
++.|-+.+|..| ||. .......+.|-.++.++..++
T Consensus 4 t~~Yh~~wi~~l--~~~--s~~a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 4 TNKYHEKWISKF--APG--NELSKKYLAKVKERHELKEFN 39 (93)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHH--ccC--cHhHHHHHHHHHHHHHHHHHH
Confidence 567888899888 775 556666666666665554443
No 118
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=29.47 E-value=11 Score=27.93 Aligned_cols=9 Identities=33% Similarity=1.460 Sum_probs=8.0
Q ss_pred ceeecccCC
Q 024980 228 EWFHYACVG 236 (259)
Q Consensus 228 ~wfH~~Cvg 236 (259)
.|||+.|+-
T Consensus 57 ~W~H~~Cf~ 65 (106)
T 2dmj_A 57 HWYHFSCFW 65 (106)
T ss_dssp EEEETTHHH
T ss_pred EeECcCccc
Confidence 799999974
No 119
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.10 E-value=1.6e+02 Score=21.16 Aligned_cols=94 Identities=15% Similarity=0.267 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhcCCC-CC-----CCCCCchHHHHHHHHHHHHHHHH
Q 024980 19 TLPAELQRLLNTIRELDERSHSMINQTRQQTKYC-------LGLASQGN-KK-----GNGNEEDEAIEKMRKEIEVNQDN 85 (259)
Q Consensus 19 ~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~-------~~~~~~~~-~~-----~~~~~~~~~~~~~~~~I~~~~~~ 85 (259)
++|.+++..+.....+-.+++.+..++.....-+ ..+..... .+ |..+.. .....
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~------------~~~~e 70 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVK------------TTKDK 70 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEE------------ECHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhh------------ccHHH
Confidence 6777888777777777777777666655432211 11111000 00 100111 11123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024980 86 ALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQ 124 (259)
Q Consensus 86 ~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~L~~ 124 (259)
+...-++++.-......-+++.+..+...+..++..|.+
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555666667777777777777666554
No 120
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.71 E-value=3.5e+02 Score=24.98 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024980 30 TIRELDERSHSMINQTR 46 (259)
Q Consensus 30 ~IreLD~~~~~~~~~l~ 46 (259)
++.+++...+.+..++.
T Consensus 457 e~~~~~~~i~~l~~~~~ 473 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQI 473 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 121
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=28.57 E-value=12 Score=28.35 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=9.0
Q ss_pred CceeecccCCC
Q 024980 227 GEWFHYACVGL 237 (259)
Q Consensus 227 ~~wfH~~Cvgl 237 (259)
..|||+.|+--
T Consensus 51 ~~W~H~~Cf~~ 61 (114)
T 1v9x_A 51 PMWNHASCILK 61 (114)
T ss_dssp CEEEEHHHHHT
T ss_pred ceeECccccch
Confidence 48999999853
No 122
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=28.38 E-value=46 Score=22.04 Aligned_cols=49 Identities=22% Similarity=0.564 Sum_probs=28.8
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCC---CCCCceecccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPET---RFKGKWYCPTCRLLP 256 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~---~~~~~w~C~~C~~~~ 256 (259)
+...| +|.......++ . .|. -.||..|+.---.. ...+...||.|+...
T Consensus 11 ~~~~C~IC~~~~~~p~~-l---~Cg--H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS-L---DCG--HSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECSSCCC-C---SSS--CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccCCeeE-C---CCC--CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 34556 78777544332 2 377 34999998622211 013477899998654
No 123
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=26.46 E-value=11 Score=28.51 Aligned_cols=10 Identities=40% Similarity=1.152 Sum_probs=8.6
Q ss_pred CceeecccCC
Q 024980 227 GEWFHYACVG 236 (259)
Q Consensus 227 ~~wfH~~Cvg 236 (259)
..|||+.|+-
T Consensus 48 ~~W~H~~Cf~ 57 (117)
T 1uw0_A 48 KEWYHIKCMF 57 (117)
T ss_dssp CCBCCHHHHH
T ss_pred CeeECcccch
Confidence 3899999985
No 124
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=26.04 E-value=27 Score=28.62 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=15.9
Q ss_pred CCCCCCCC-CCCceecccccc
Q 024980 235 VGLTPETR-FKGKWYCPTCRL 254 (259)
Q Consensus 235 vgl~~~~~-~~~~w~C~~C~~ 254 (259)
||++..|. ..-+.|||.|..
T Consensus 122 vGlSd~pg~~~VKlyCP~C~D 142 (182)
T 1qf8_A 122 IGLSDIPGEAMVKLYCPKCMD 142 (182)
T ss_dssp ECSCSSTTSCBCEEECTTTCC
T ss_pred CccCCCCCCCceEEECCCccc
Confidence 78888885 456999999974
No 125
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=25.51 E-value=12 Score=26.21 Aligned_cols=47 Identities=17% Similarity=0.524 Sum_probs=28.3
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
+...| +|.......++. . .|. --|+..|+.---.. .+...||.|+..
T Consensus 12 ~~~~C~IC~~~~~~p~~~-~--~Cg--H~fC~~Ci~~~~~~--~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVI-P--CCG--NSYCDECIRTALLE--SDEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEECSSCEEC-T--TTC--CEECHHHHHHHHHH--CTTCCCTTTCCS
T ss_pred cCCCCCCCChhhcCceEC-C--CCC--CHHHHHHHHHHHHh--cCCCcCcCCCCc
Confidence 35667 788776543322 2 366 44889998421111 345789999865
No 126
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=25.47 E-value=30 Score=21.56 Aligned_cols=33 Identities=24% Similarity=0.735 Sum_probs=24.3
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCC
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTP 239 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~ 239 (259)
.+++| +|++.-+ .-+.|. .|. + -+|-.|+....
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~--~C~-~-~~H~~C~~~v~ 46 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQ--TCG-Y-KFHEHCSTKVP 46 (52)
T ss_dssp SCEECTTSSSEEC-SEEECT--TTT-C-CBCSTTSSSSS
T ss_pred CCcCCCCcccccc-cCCEeC--CCC-C-eEChhHHhhCc
Confidence 47888 6877655 567899 899 4 48999986543
No 127
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=25.46 E-value=14 Score=28.14 Aligned_cols=11 Identities=27% Similarity=1.084 Sum_probs=9.0
Q ss_pred CceeecccCCC
Q 024980 227 GEWFHYACVGL 237 (259)
Q Consensus 227 ~~wfH~~Cvgl 237 (259)
..|||+.|+--
T Consensus 69 ~~WyH~~Cf~~ 79 (116)
T 3od8_A 69 PHWYHFSCFWK 79 (116)
T ss_dssp EEEEEHHHHHH
T ss_pred CeeECCccChh
Confidence 38999999854
No 128
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=25.35 E-value=20 Score=29.02 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=9.2
Q ss_pred CCceecccccc
Q 024980 244 KGKWYCPTCRL 254 (259)
Q Consensus 244 ~~~w~C~~C~~ 254 (259)
.|.|.|+.|-.
T Consensus 60 ~g~~~CekC~~ 70 (181)
T 1l1o_C 60 NGLYRCEKCDT 70 (181)
T ss_dssp TTEEEETTTTE
T ss_pred CCeEECCCCCC
Confidence 67999999964
No 129
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.11 E-value=13 Score=28.93 Aligned_cols=9 Identities=33% Similarity=1.161 Sum_probs=8.0
Q ss_pred ceeecccCC
Q 024980 228 EWFHYACVG 236 (259)
Q Consensus 228 ~wfH~~Cvg 236 (259)
.|||+.|+-
T Consensus 61 ~W~H~~Cf~ 69 (134)
T 2cs2_A 61 RWYHPGCFV 69 (134)
T ss_dssp EEECHHHHH
T ss_pred eeECcCcCh
Confidence 799999984
No 130
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.09 E-value=4e+02 Score=24.38 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 84 DNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAE 120 (259)
Q Consensus 84 ~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~ 120 (259)
+..+.-.+.-|..-+.++...+..|..|...+..++.
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677777777788888888888888876654
No 131
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=24.61 E-value=2e+02 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 024980 100 AYDIIDSHIKRLDEDLNNFAEDLKQEGK 127 (259)
Q Consensus 100 ~~dlVdrhirrLD~dl~~~~~~L~~~~~ 127 (259)
+-.+++++++.++..++.+++.+..+|.
T Consensus 48 lk~iL~~~~~~~~~~i~~l~~~~~~~g~ 75 (171)
T 2rbd_A 48 LKNLIDEAIQAMQDENHQLEELLRSNGV 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3445555555555555555555655553
No 132
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=24.60 E-value=13 Score=27.89 Aligned_cols=9 Identities=33% Similarity=1.161 Sum_probs=8.2
Q ss_pred ceeecccCC
Q 024980 228 EWFHYACVG 236 (259)
Q Consensus 228 ~wfH~~Cvg 236 (259)
.|||+.|+-
T Consensus 53 ~W~H~~Cf~ 61 (111)
T 3odc_A 53 RWYHPGCFV 61 (111)
T ss_dssp EEECHHHHH
T ss_pred eeEChhhcc
Confidence 999999975
No 133
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.51 E-value=11 Score=25.15 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=25.3
Q ss_pred cce-ecCCCCC-CCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 204 TYC-VCHQVSF-GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 204 ~~C-~C~~~~~-g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
..| +|..... +..+.-- .|. -.||..|+.---.. ...||.|+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~--~C~--H~f~~~Ci~~~~~~----~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGIC--PCK--HAFHRKCLIKWLEV----RKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEE--TTT--EEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEc--CCC--CEecHHHHHHHHHc----CCcCCCcCccc
Confidence 345 7877653 3333111 277 56999998421111 23799998653
No 134
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=24.35 E-value=19 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=25.9
Q ss_pred cce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCC
Q 024980 204 TYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPE 240 (259)
Q Consensus 204 ~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~ 240 (259)
..| .|+....|.+-.|. .|. -.+|..|+-++..
T Consensus 48 ~~C~~C~~~~~~~~Y~C~--~C~--f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCD--ECD--FDLHAKCALNEDT 81 (89)
T ss_dssp CCCTTTSCCCCSCEEECT--TTC--CCCCHHHHHCSSC
T ss_pred eEeCCCCCcCCCcEEEcC--CCC--CeEcHHhcCCCCc
Confidence 457 68888788888999 899 4599999976544
No 135
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=24.04 E-value=24 Score=30.89 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=11.8
Q ss_pred CCCceeccccccccC
Q 024980 243 FKGKWYCPTCRLLPQ 257 (259)
Q Consensus 243 ~~~~w~C~~C~~~~~ 257 (259)
....||||.|....+
T Consensus 276 ~R~t~~CP~CQ~~~~ 290 (295)
T 3vk8_A 276 KRTTYWAPAIQKLEH 290 (295)
T ss_dssp CCEEEECTTTCBCC-
T ss_pred CCccEECCCCCCCcc
Confidence 477999999997654
No 136
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.31 E-value=62 Score=19.89 Aligned_cols=43 Identities=28% Similarity=0.584 Sum_probs=24.2
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C 252 (259)
...| +|.......++ - .|. -.||..|+.--... ......||.|
T Consensus 15 ~~~C~IC~~~~~~p~~-~---~Cg--H~fC~~Ci~~~~~~-~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI-I---ECG--HNFCKACITRWWED-LERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCC-C---SSC--CCCCHHHHHHHTTS-SCCSCCCSCC
T ss_pred CCCCccCCcccCccEe-C---CCC--CccCHHHHHHHHHh-cCCCCCCCCC
Confidence 4456 78777644322 1 366 33999998522111 0346679887
No 137
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=23.14 E-value=12 Score=27.69 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=17.7
Q ss_pred CCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 223 NCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 223 ~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
.|. --||..|+.--- ...-.||.|+..
T Consensus 72 ~C~--H~FH~~Ci~~Wl----~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 72 VCN--HAFHFHCISRWL----KTRQVCPLDNRE 98 (106)
T ss_dssp TTS--CEEEHHHHHHHH----TTCSBCSSSCSB
T ss_pred ccC--cEECHHHHHHHH----HcCCcCcCCCCc
Confidence 477 449999983111 224579999875
No 138
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.12 E-value=41 Score=30.19 Aligned_cols=32 Identities=31% Similarity=0.680 Sum_probs=25.4
Q ss_pred CCCcce-ecCCCCCCC---ccccCCCCCCCCceeecccCC
Q 024980 201 NEPTYC-VCHQVSFGD---MIACDNENCQGGEWFHYACVG 236 (259)
Q Consensus 201 ~~~~~C-~C~~~~~g~---mi~Cd~~~C~~~~wfH~~Cvg 236 (259)
..+++| .|+...+|. -..|. .|. ..+|..|.+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~--~C~--~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCY--RCR--APAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEET--TTC--CEECGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCC--CCc--Cccchhhhh
Confidence 468999 688887763 44599 899 779999985
No 139
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.37 E-value=17 Score=26.25 Aligned_cols=46 Identities=22% Similarity=0.412 Sum_probs=26.5
Q ss_pred cce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 204 TYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 204 ~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
..| +|.......++ . .|. -.||..|+.---.. ..+...||.|+...
T Consensus 22 ~~C~IC~~~~~~p~~-~---~Cg--H~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIKEPVS-T---KCD--HIFCKFCMLKLLNQ-KKGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCSSCCB-C---TTS--CCCCSHHHHHHHHS-SSSSCCCTTTSCCC
T ss_pred CCCcccChhhcCeEE-C---CCC--CHHHHHHHHHHHHh-CCCCCCCcCCCCcC
Confidence 346 78776543222 2 377 45999997421111 13457899998653
No 140
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=22.23 E-value=40 Score=24.13 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024980 4 ARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLA 56 (259)
Q Consensus 4 ~~~~~yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~~~~~ 56 (259)
.|+..+|+.||+.-|.+.. .|.-....+.+++..+..+++++
T Consensus 34 ~eae~~L~~FI~~~E~~~~-----------~~t~lSs~LsQLKRvQRdlrGLP 75 (87)
T 2rf4_B 34 DEVLQFLESFIDEKENIID-----------IDTNLSSSISQLKRIQRDFKGLP 75 (87)
T ss_dssp HHHHHHHHHHHHHHHSSSC-----------CCTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccc-----------cccchHHHHHHHHHHHHhhcCCC
Confidence 3577899999999888776 44444457777777777777765
No 141
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.09 E-value=1.8e+02 Score=20.40 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 7 GVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTR 46 (259)
Q Consensus 7 ~~yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l~ 46 (259)
+..|..-++.|..|-.+.++...++..|-.+.+.+..++.
T Consensus 44 ~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 44 VVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555555555555555544443
No 142
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.60 E-value=23 Score=28.67 Aligned_cols=12 Identities=17% Similarity=0.935 Sum_probs=9.9
Q ss_pred CCceeccccccc
Q 024980 244 KGKWYCPTCRLL 255 (259)
Q Consensus 244 ~~~w~C~~C~~~ 255 (259)
.|.|+|+.|-..
T Consensus 57 ~g~~~CekC~~~ 68 (172)
T 3u50_C 57 GDSFFCESCQQF 68 (172)
T ss_dssp TTEEEETTTTEE
T ss_pred CCeEECCCCCCC
Confidence 689999999753
No 143
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.37 E-value=1.8e+02 Score=27.07 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 7 GVYVDDYLEYASTLPAELQRLLNTIRELDERSHSMINQT 45 (259)
Q Consensus 7 ~~yLedfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l 45 (259)
+.||-.|--.|..==.+|.++|..|-..-..+.+++..|
T Consensus 83 ad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~i 121 (461)
T 3ghg_B 83 QEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLL 121 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456666665555544455555555544444444444444
No 144
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.26 E-value=5.1e+02 Score=24.18 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024980 10 VDDYLEYASTLPAELQRLLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQDNALSL 89 (259)
Q Consensus 10 Ledfle~ie~LP~El~r~l~~IreLD~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l 89 (259)
|-+.|+.+..+-......+..|.++=..-+.-..+.+.....+ ...+..+|.-.-+++..-
T Consensus 70 Lkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~-------------------S~eLe~ri~yIK~kVd~q 130 (491)
T 1m1j_A 70 IRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHV-------------------STELRRRIVTLKQRVATQ 130 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHH-------------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 90 CTEKVLLARQAYDIIDSHIKRLDEDLN 116 (259)
Q Consensus 90 sdEKv~LA~q~~dlVdrhirrLD~dl~ 116 (259)
- ..|.+-+..++-+-..|+||+.++.
T Consensus 131 i-~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 131 V-NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHH
No 145
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.19 E-value=3.6e+02 Score=23.74 Aligned_cols=46 Identities=9% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 75 MRKEIEVNQDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAED 121 (259)
Q Consensus 75 ~~~~I~~~~~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~ 121 (259)
+..+|.+ ++..+.-.++.|..-+..++..+..|.+|...+..++..
T Consensus 10 ~~~~~~~-~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 10 ILEEVRI-LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433 233334445555555555556667777777766655543
No 146
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.82 E-value=2.7e+02 Score=21.27 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024980 83 QDNALSLCTEKVLLARQAYDIIDSHIKRLDEDLNNFAEDLKQ 124 (259)
Q Consensus 83 ~~~~~~lsdEKv~LA~q~~dlVdrhirrLD~dl~~~~~~L~~ 124 (259)
..+|.++-++|+..+....+-+++-+..+...+..++..+.+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888998888888888888888888888777665543
No 147
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=20.54 E-value=16 Score=23.82 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=23.9
Q ss_pred ce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccccccc
Q 024980 205 YC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLLP 256 (259)
Q Consensus 205 ~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~~ 256 (259)
.| +|........+ .- .|. -.||..|+.--- .....||.|+...
T Consensus 7 ~C~IC~~~~~~~~~-~~--~C~--H~fc~~Ci~~~~----~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 7 RCPICLEDPSNYSM-AL--PCL--HAFCYVCITRWI----RQNPTCPLCKVPV 50 (68)
T ss_dssp CCSSCCSCCCSCEE-ET--TTT--EEESTTHHHHHH----HHSCSTTTTCCCC
T ss_pred CCeeCCccccCCcE-ec--CCC--CeeHHHHHHHHH----hCcCcCcCCChhh
Confidence 35 77666433222 22 377 349999983211 1134799998653
No 148
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.43 E-value=4.7e+02 Score=23.96 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024980 27 LLNTIRELDERSHSMINQTRQQTKYCLGLASQGNKKGNGNEEDEAIEKMRKEIEVNQDNALSLCTEKVLLARQAYDIIDS 106 (259)
Q Consensus 27 ~l~~IreLD~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~lsdEKv~LA~q~~dlVdr 106 (259)
.+..|-+||.+..+++.++++.. ..+..|.+....++.-.++.-+|-.++-.+ ..
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~------------------------~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~-~~ 83 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLR------------------------HERNKIAVEIGKRRKKGEPVDELLAKSREI-VK 83 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTSCCCTHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhhcccccHHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024980 107 HIKRLDEDLNNFAEDLKQ 124 (259)
Q Consensus 107 hirrLD~dl~~~~~~L~~ 124 (259)
.|+.|+..+..+++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 84 RIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 149
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=26 Score=22.40 Aligned_cols=44 Identities=27% Similarity=0.632 Sum_probs=25.1
Q ss_pred CCcce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceecccc
Q 024980 202 EPTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTC 252 (259)
Q Consensus 202 ~~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C 252 (259)
+...| +|.......++. .|. -.||..|+.---.. ..+...||.|
T Consensus 19 ~~~~C~IC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTI----DCG--HNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEEC----TTS--SEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEe----CCC--CcchHHHHHHHHHc-CCCCCcCcCC
Confidence 34556 787776543332 377 45999998421110 0245679887
No 150
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.17 E-value=26 Score=22.93 Aligned_cols=42 Identities=24% Similarity=0.572 Sum_probs=25.6
Q ss_pred Ccce-ecCCCCCCCccccCCCCCCCCceeecccCCCCCCCCCCCceeccccccc
Q 024980 203 PTYC-VCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRLL 255 (259)
Q Consensus 203 ~~~C-~C~~~~~g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~C~~~ 255 (259)
...| +|...... +.- .|. -.||..|+.--. .....||.|+..
T Consensus 15 ~~~C~IC~~~~~~--~~~---~Cg--H~fc~~Ci~~~~----~~~~~CP~Cr~~ 57 (70)
T 2ecn_A 15 EEECCICMDGRAD--LIL---PCA--HSFCQKCIDKWS----DRHRNCPICRLQ 57 (70)
T ss_dssp CCCCSSSCCSCCS--EEE---TTT--EEECHHHHHHSS----CCCSSCHHHHHC
T ss_pred CCCCeeCCcCccC--ccc---CCC--CcccHHHHHHHH----HCcCcCCCcCCc
Confidence 3445 78776544 222 377 449999984211 235679999854
No 151
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=20.02 E-value=22 Score=26.25 Aligned_cols=33 Identities=18% Similarity=0.644 Sum_probs=21.0
Q ss_pred CCccccCCCCCCCCceeecccCCCCCCCCCCCceeccc
Q 024980 214 GDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPT 251 (259)
Q Consensus 214 g~mi~Cd~~~C~~~~wfH~~Cvgl~~~~~~~~~w~C~~ 251 (259)
...|+|| .|. -|=-+. .++.......++|||..
T Consensus 26 ~~WVQCD--~C~--KWRrLP-~~~~~~~~~pd~W~C~m 58 (100)
T 2l7p_A 26 SAWVRCD--DCF--KWRRIP-ASVVGSIDESSRWICMN 58 (100)
T ss_dssp SEEEECT--TTC--CEEEEC-HHHHTTSTTSSCCCGGG
T ss_pred CeEEeeC--CCC--ccccCC-hhHccccCCCCCceeCC
Confidence 4689999 899 996654 32221111246999964
Done!