BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024981
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 258
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/259 (73%), Positives = 205/259 (79%), Gaps = 1/259 (0%)
Query: 1 MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQXX 60
MAPKRG +A V A K+KTEKV NPLFEKRPKQFGIGGALPPKKDL RFV+WP V IQ
Sbjct: 1 MAPKRGGRAPVPA-KKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59
Query: 61 XXXXXXXXXVPPALNQFTKTLDKNLASNLFKMLLKYRPEDXXXXXXXXXXXXXXXXXGKT 120
VPPALNQFT+TLDKNLA+NLFKMLLKYRPED GKT
Sbjct: 60 RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKT 119
Query: 121 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180
VE+KKPIVVKYGLNHVTYLIEQ+KAQLVVIAHDVDP+ELVVWLPALCRKME+PYCIVKGK
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 179
Query: 181 ARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240
ARLG IVHKKTASVLCLTTVKNEDK+EFS+ILEAIKANFNDK+DE RKKWGGG+MGSKSQ
Sbjct: 180 ARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ 239
Query: 241 XXXXXXXXXXXXXXXQRMS 259
QRM+
Sbjct: 240 AKTKAREKLLAKEAAQRMT 258
>pdb|2ZKR|FF Chain f, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 266
Score = 253 bits (647), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 119/226 (52%), Positives = 157/226 (69%), Gaps = 1/226 (0%)
Query: 15 KRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQXXXXXXXXXXXVPPAL 74
K++ +KVVNPLFEKRPK FGIG + PK+DLTRFV+WP + +Q VPPA+
Sbjct: 21 KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI 80
Query: 75 NQFTKTLDKNLASNLFKMLLKYRPEDXXXXXXXXXXXXXXXXXGK-TVESKKPIVVKYGL 133
NQFT+ LD+ A+ L K+ KYRPE GK V +K+P V++ G+
Sbjct: 81 NQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV 140
Query: 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTAS 193
N VT L+E KAQLVVIAHDVDP+ELVV+LPALCRKM +PYCI+KGKARLG +VH+KT +
Sbjct: 141 NTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCT 200
Query: 194 VLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKS 239
+ T V +EDK ++++EAI+ N+ND+YDE R+ WGG ++G KS
Sbjct: 201 TVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246
>pdb|4A17|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 255
Score = 246 bits (629), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 149/218 (68%), Gaps = 1/218 (0%)
Query: 23 NPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQXXXXXXXXXXXVPPALNQFTKTLD 82
NPLF+ +P+ F +GG + PK+DLTRFVRWP + +Q VPP ++QFTKTLD
Sbjct: 19 NPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKTLD 78
Query: 83 KNLASNLFKMLLKYRPEDXXXXXXXXXXXXXXXXXGKTVESKKPIVVKYGLNHVTYLIEQ 142
KN +SNLFK+L Y PE GK VE+KKPIV+KYGLNH+T LIE
Sbjct: 79 KNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIEN 138
Query: 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKN 202
+A+LVVIAHDVDP+ELV++LP LCRK ++P+ VKGKA LG +V+KKTA+ + LT V+N
Sbjct: 139 KQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKTATAVALTEVRN 198
Query: 203 EDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240
EDK + + E K N+N DE RK WGGGI+G KSQ
Sbjct: 199 EDKAKLQQFSELFKTNYNAN-DELRKTWGGGILGQKSQ 235
>pdb|3IZS|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|H Chain H, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|H Chain H, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|G Chain G, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 256
Score = 237 bits (604), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAPKRGVK-ALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQX 59
MAP + V A A K+ K NPL PK FGIG A+ PK++L+R+V+WP V +Q
Sbjct: 1 MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR 60
Query: 60 XXXXXXXXXXVPPALNQFTKTLDKNLASNLFKMLLKYRPEDXXXXXXXXXXXXXXXXXGK 119
VPP + QF TLD+N A+ FK+ KYRPE GK
Sbjct: 61 QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK 120
Query: 120 TVE--SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV 177
+ + S KP VKYGLNHV LIE KA+LV+IA+DVDP+ELVV+LPALC+KM +PY IV
Sbjct: 121 SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV 180
Query: 178 KGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGS 237
KGKARLG +V++KT++V LT V+ ED+ ++++ I ANF DKYDE +K WGGGI+G+
Sbjct: 181 KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN 240
Query: 238 KSQ 240
K+Q
Sbjct: 241 KAQ 243
>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 276
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 2/217 (0%)
Query: 26 FEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQXXXXXXXXXXXVPPALNQFTKTLDKNL 85
F RPK FGIG +P +DL+RF+RWPT V +Q VPPALNQFTK LD++
Sbjct: 40 FVARPKDFGIGRDVPYARDLSRFMRWPTFVTMQRKKRVLQRRLKVPPALNQFTKVLDRSS 99
Query: 86 ASNLFKMLLKYRPEDXXXXXXXXXXXXXXXXXG--KTVESKKPIVVKYGLNHVTYLIEQN 143
+ L K++ KY PE TV +K P+ V GL VT IE+
Sbjct: 100 RNELLKLVKKYAPETRKARRDRLTKVAEEKKKNPKGTVSTKAPLCVVSGLQEVTRTIEKK 159
Query: 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNE 203
A+LV+IA++VDP+ELV+W+P LCR +IPY IVK KARLG + +KTA+ + T V E
Sbjct: 160 TARLVLIANNVDPIELVLWMPTLCRANKIPYAIVKDKARLGDAIGRKTATCVAFTDVNAE 219
Query: 204 DKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240
D+ + ++ A F + D R++WGG + +S+
Sbjct: 220 DQAALKNLTRSVNARFLARSDVIRRQWGGLQLSLRSR 256
>pdb|1S1I|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 119
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 75/95 (78%)
Query: 123 SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKAR 182
S KP VKYGLNHV LIE KA+LV+IA+DVDP+ELVV+LPALC+KM +PY IVKGKAR
Sbjct: 25 SPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKAR 84
Query: 183 LGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKA 217
LG +V++KT++V LT V+ ED+ ++++ I A
Sbjct: 85 LGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDA 119
>pdb|3JYW|G Chain G, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 113
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 74/93 (79%)
Query: 123 SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKAR 182
S KP VKYGLNHV LIE KA+LV+IA+DVDP+ELVV+LPALC+KM +PY IVKGKAR
Sbjct: 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKAR 79
Query: 183 LGVIVHKKTASVLCLTTVKNEDKMEFSRILEAI 215
LG +V++KT++V LT V+ ED+ ++++ I
Sbjct: 80 LGTLVNQKTSAVAALTEVRAEDEAALAKLVSTI 112
>pdb|3LWO|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
pdb|3LWP|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
pdb|3LWQ|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
pdb|3LWR|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
pdb|3LWV|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
pdb|3J20|3 Chain 3, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
pdb|3J21|G Chain G, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
pdb|3J21|4 Chain 4, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 123
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
++ G N T +E+ +A+LV+IA DVDP E+V LP LC + EIPY V K LG
Sbjct: 32 IRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 87
>pdb|3NMU|C Chain C, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|G Chain G, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVI|B Chain B, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
pdb|3NVI|D Chain D, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
pdb|3NVK|E Chain E, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|H Chain H, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 129
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
++ G N T +E+ +A+LV+IA DVDP E+V LP LC + EIPY V K LG
Sbjct: 38 IRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 93
>pdb|2HVY|D Chain D, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
pdb|3HAX|D Chain D, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
pdb|3HAY|D Chain D, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 130
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
++ G N T +E+ +A+LV+IA DVDP E+V LP LC + EIPY V K LG
Sbjct: 33 IRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 88
>pdb|2CZW|A Chain A, Crystal Structure Analysis Of Protein Component Ph1496p Of
P.Horikoshii Ribonuclease P
Length = 124
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
++ G N T +E+ +A+LV+IA DVDP E+V LP LC + EIPY V K LG
Sbjct: 33 IRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 88
>pdb|3HJW|C Chain C, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 120
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
++ G N T +E+ +A+LV+IA DVDP E+V LP LC + EIPY V K LG
Sbjct: 30 IRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 85
>pdb|1PXW|A Chain A, Crystal Structure Of L7ae Srnp Core Protein From
Pyrococcus Abyssii
pdb|1PXW|B Chain B, Crystal Structure Of L7ae Srnp Core Protein From
Pyrococcus Abyssii
Length = 128
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
++ G N T +E+ +A+LV+IA DVDP E+V LP LC + EIPY V K LG
Sbjct: 37 IRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 92
>pdb|2FC3|A Chain A, Crystal Structure Of The Extremely Thermostable Aeropyrum
Pernix L7ae Multifunctional Protein
Length = 124
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N T +E+ A+LVVIA DVDP E+V+ LP LC + +IPY V K RLG
Sbjct: 29 IKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLG 84
>pdb|1RLG|A Chain A, Molecular Basis Of Box CD RNA-Protein Interaction: Co-
Crystal Structure Of The Archaeal Srnp Intiation Complex
pdb|1RLG|B Chain B, Molecular Basis Of Box CD RNA-Protein Interaction: Co-
Crystal Structure Of The Archaeal Srnp Intiation Complex
Length = 119
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
VK G N T +E+ A+LV IA DVDP E+V LP LC + +PY VK K LG V
Sbjct: 28 VKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVG 87
Query: 189 KKTASVLCLTTVKNEDKMEFSRILEAIKA 217
+ + E + E ++E IK
Sbjct: 88 IEVPCASAAIINEGELRKELGSLVEKIKG 116
>pdb|3ID5|C Chain C, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|G Chain G, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|C Chain C, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|D Chain D, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|L Chain L, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 130
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N T +E+ +A+LV+IA DV P E+V LP LC + +IPY V K LG
Sbjct: 35 IKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALG 90
>pdb|3PAF|A Chain A, M. Jannaschii L7ae Mutant
pdb|3PAF|B Chain B, M. Jannaschii L7ae Mutant
Length = 117
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N VT +E+ A+LV+IA DV P E+V LP LC + IPY V K LG
Sbjct: 27 IKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLG 82
>pdb|1RA4|A Chain A, Crystal Structure Of The Methanococcus Jannaschii L7ae
Protein
pdb|1XBI|A Chain A, High Resolution Structure Of Methanocaldococcus Jannaschii
L7ae
Length = 120
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N VT +E+ A+LV+IA DV P E+V LP LC + IPY V K LG
Sbjct: 30 IKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLG 85
>pdb|1SDS|A Chain A, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|B Chain B, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|C Chain C, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
Length = 117
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N VT +E+ A+LV+IA DV P E+V LP LC + IPY V K LG
Sbjct: 27 IKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLG 82
>pdb|3O85|A Chain A, Giardia Lamblia 15.5kd Rna Binding Protein
pdb|3O85|B Chain B, Giardia Lamblia 15.5kd Rna Binding Protein
Length = 122
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N + + KA+LV+IA D DP+E+V+ LP C +PY + K LG
Sbjct: 32 IKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALG 87
>pdb|2JNB|A Chain A, Solution Structure Of Rna-Binding Protein 15.5k
Length = 144
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
++ G N T + + ++ +V+A D +P+E+++ LP LC +PY V+ K LG
Sbjct: 51 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACG 110
Query: 189 KKTASVLCLTTVKNEDKM 206
+ C T+K ++
Sbjct: 111 VSRPVIACSVTIKEGSQL 128
>pdb|3G4S|F Chain F, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|F Chain F, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|F Chain F, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
Length = 119
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
VK G N T IE+ A+LV +A DV P E+V+ +P L + +P+ V+ + LG
Sbjct: 29 VKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAG 88
Query: 189 KKTASVLCLTTVKNEDKMEFSRILEAIK 216
+ S T E + I + ++
Sbjct: 89 LEVGSAAAAVTDAGEADADVEDIADKVE 116
>pdb|2OZB|A Chain A, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
pdb|2OZB|D Chain D, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
pdb|3SIU|A Chain A, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIU|D Chain D, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIV|A Chain A, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|D Chain D, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|G Chain G, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|J Chain J, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
Length = 130
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
++ G N T + + ++ +V+A D +P+E+++ LP LC +PY V+ K LG
Sbjct: 37 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACG 96
Query: 189 KKTASVLCLTTVKNEDKM 206
+ C T+K ++
Sbjct: 97 VSRPVIACSVTIKEGSQL 114
>pdb|1S72|F Chain F, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|F Chain F, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|F Chain F, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|F Chain F, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|F Chain F, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|F Chain F, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|F Chain F, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|F Chain F, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|F Chain F, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|F Chain F, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|F Chain F, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|F Chain F, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|F Chain F, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|F Chain F, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|F Chain F, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|F Chain F, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|F Chain F, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|F Chain F, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|F Chain F, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|F Chain F, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|F Chain F, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|F Chain F, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|F Chain F, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|F Chain F, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|F Chain F, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|F Chain F, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|F Chain F, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|F Chain F, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|F Chain F, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|F Chain F, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|F Chain F, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|F Chain F, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|F Chain F, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|F Chain F, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 120
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
VK G N T IE+ A+LV +A DV P E+V+ +P L + +P+ V+ + LG
Sbjct: 30 VKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAG 89
Query: 189 KKTASVLCLTTVKNEDKMEFSRILEAIK 216
+ S T E + I + ++
Sbjct: 90 LEVGSAAAAVTDAGEADADVEDIADKVE 117
>pdb|1E7K|A Chain A, Crystal Structure Of The Spliceosomal 15.5kd Protein Bound
To A U4 Snrna Fragment
pdb|1E7K|B Chain B, Crystal Structure Of The Spliceosomal 15.5kd Protein Bound
To A U4 Snrna Fragment
Length = 128
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
++ G N T + + ++ +V+A D +P+E+++ LP LC +PY V+ K LG
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACG 94
Query: 189 KKTASVLCLTTVKNEDKM 206
+ C T+K ++
Sbjct: 95 VSRPVIACSVTIKEGSQL 112
>pdb|1FFK|E Chain E, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|F Chain F, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|F Chain F, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|H Chain H, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|H Chain H, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|H Chain H, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|H Chain H, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|H Chain H, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|H Chain H, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|H Chain H, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|H Chain H, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|H Chain H, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|H Chain H, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|H Chain H, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|H Chain H, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|H Chain H, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|F Chain F, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|F Chain F, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|F Chain F, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|F Chain F, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3OW2|F Chain F, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 119
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
VK G N T IE+ A+LV +A DV P E+V+ +P L + +P+ V+ + LG
Sbjct: 29 VKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLG 84
>pdb|2LBX|A Chain A, Solution Structure Of The S. Cerevisiae HACA RNP PROTEIN
NHP2P
Length = 121
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
VK G+ V + + + LVVIA D+ P +++ +P LC +PY + K LG
Sbjct: 21 VKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGA 80
Query: 189 KKTASVLCLTTVKNEDKMEFSRILEAIKANFND 221
K + + + K + E K +FN+
Sbjct: 81 TKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNE 113
>pdb|2AIF|A Chain A, Crystal Structure Of High Mobility Like Protein, Nhp2,
Putative From Cryptosporidium Parvum
Length = 135
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
++ G N T + + A++V++A D +P+E+++ LP +C PY V+ K LG
Sbjct: 42 LRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALG 97
>pdb|1ZWZ|A Chain A, Structural Comparison Of Yeast Snornp And Splicesomal
Protein Snu13p With Its Homologs
pdb|1ZWZ|B Chain B, Structural Comparison Of Yeast Snornp And Splicesomal
Protein Snu13p With Its Homologs
Length = 126
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N T + + ++ +++A D +P+E+++ LP LC +PY V + LG
Sbjct: 33 LKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALG 88
>pdb|2ALE|A Chain A, Crystal Structure Of Yeast Rna Splicing Factor Snu13p
Length = 134
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
+K G N T + + ++ +++A D +P+E+++ LP LC +PY V + LG
Sbjct: 33 LKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALG 88
>pdb|2LBW|A Chain A, Solution Structure Of The S. Cerevisiae HACA RNP PROTEIN
NHP2P-S82w Mutant
Length = 121
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188
VK G+ V + + + LVVIA D+ P +++ +P LC +PY + K LG
Sbjct: 21 VKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGA 80
Query: 189 KKTASVLCLTTVKNEDKMEFSRILEAIKANFND 221
K + + + K + E K +FN+
Sbjct: 81 TKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNE 113
>pdb|2XZM|U Chain U, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|U Chain U, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 126
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 132 GLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184
GL+ V IE +A V +A D D V + ALC K EI Y V +A LG
Sbjct: 28 GLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,888,410
Number of Sequences: 62578
Number of extensions: 188895
Number of successful extensions: 359
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 32
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)