Query 024981
Match_columns 259
No_of_seqs 261 out of 1065
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00365 60S ribosomal protein 100.0 2E-103 3E-108 711.7 21.8 253 6-259 7-262 (266)
2 PTZ00222 60S ribosomal protein 100.0 1.5E-98 3E-103 677.7 20.9 235 21-255 23-260 (263)
3 KOG3166 60S ribosomal protein 100.0 2E-75 4.3E-80 514.0 9.2 208 18-249 1-209 (209)
4 COG1358 RPL8A Ribosomal protei 99.9 5.3E-24 1.2E-28 174.0 11.8 99 94-203 4-102 (116)
5 TIGR03677 rpl7ae 50S ribosomal 99.9 1.3E-23 2.8E-28 171.2 12.9 108 98-217 7-115 (117)
6 PRK04175 rpl7ae 50S ribosomal 99.9 3.2E-23 7E-28 170.2 13.1 109 97-217 10-119 (122)
7 PRK07714 hypothetical protein; 99.8 2.5E-19 5.5E-24 141.9 11.5 89 102-202 3-91 (100)
8 PRK07283 hypothetical protein; 99.8 8.2E-19 1.8E-23 138.8 11.6 88 102-202 3-90 (98)
9 PRK01018 50S ribosomal protein 99.8 8.4E-19 1.8E-23 139.1 11.2 85 106-202 5-91 (99)
10 PTZ00106 60S ribosomal protein 99.8 7.9E-19 1.7E-23 141.7 10.5 97 96-204 4-102 (108)
11 PF01248 Ribosomal_L7Ae: Ribos 99.8 9E-19 1.9E-23 135.6 9.0 89 104-203 2-91 (95)
12 PRK05583 ribosomal protein L7A 99.8 3.9E-18 8.5E-23 136.7 12.1 89 102-202 2-90 (104)
13 KOG3167 Box H/ACA snoRNP compo 99.7 7.1E-18 1.5E-22 141.2 8.9 89 129-217 60-148 (153)
14 PRK13602 putative ribosomal pr 99.7 2.2E-17 4.7E-22 127.1 9.7 69 129-198 12-81 (82)
15 PRK13600 putative ribosomal pr 99.7 6.6E-17 1.4E-21 125.6 8.2 69 129-198 14-83 (84)
16 PRK09190 hypothetical protein; 99.7 4.2E-16 9.2E-21 139.8 14.2 139 37-202 23-190 (220)
17 PRK06683 hypothetical protein; 99.7 1.7E-16 3.7E-21 122.4 9.6 69 129-198 12-81 (82)
18 PRK13601 putative L7Ae-like ri 99.7 4.7E-16 1E-20 120.1 8.5 68 129-197 9-77 (82)
19 KOG3387 60S ribosomal protein 99.4 5E-13 1.1E-17 110.6 8.0 75 128-202 34-112 (131)
20 KOG3406 40S ribosomal protein 99.4 7.1E-12 1.5E-16 103.8 11.1 87 129-216 35-133 (134)
21 COG1911 RPL30 Ribosomal protei 99.2 9.1E-11 2E-15 93.3 10.3 88 105-204 7-96 (100)
22 KOG2988 60S ribosomal protein 98.1 2.1E-05 4.5E-10 64.1 8.3 83 109-205 18-104 (112)
23 PF08228 RNase_P_pop3: RNase P 97.3 0.003 6.5E-08 54.6 10.6 81 125-205 52-138 (158)
24 PF08032 SpoU_sub_bind: RNA 2' 93.2 0.31 6.6E-06 35.5 5.9 69 129-199 1-71 (76)
25 PF15608 PELOTA_1: PELOTA RNA 92.0 0.91 2E-05 36.7 7.5 64 124-199 35-98 (100)
26 PF03465 eRF1_3: eRF1 domain 3 91.8 0.26 5.6E-06 39.9 4.2 60 128-187 21-98 (113)
27 TIGR00108 eRF peptide chain re 89.9 1.8 3.9E-05 42.5 8.9 70 129-198 293-403 (409)
28 TIGR03676 aRF1/eRF1 peptide ch 87.7 4.9 0.00011 39.5 10.2 71 128-198 288-399 (403)
29 PRK04011 peptide chain release 87.0 2.4 5.2E-05 41.7 7.6 71 128-198 296-407 (411)
30 TIGR00111 pelota probable tran 85.1 3.6 7.7E-05 39.5 7.6 71 127-198 276-347 (351)
31 PF10087 DUF2325: Uncharacteri 84.8 2.1 4.5E-05 33.2 4.9 48 132-179 34-83 (97)
32 cd01422 MGS Methylglyoxal synt 81.1 3.6 7.9E-05 33.2 5.1 47 131-177 57-107 (115)
33 PLN02821 1-hydroxy-2-methyl-2- 80.4 8.2 0.00018 38.8 8.3 126 73-218 303-452 (460)
34 PF13727 CoA_binding_3: CoA-bi 79.3 3.8 8.2E-05 33.2 4.7 49 129-177 126-174 (175)
35 PF13611 Peptidase_S76: Serine 78.0 4.6 9.9E-05 33.8 4.8 41 139-181 20-60 (121)
36 PF07997 DUF1694: Protein of u 74.1 8.4 0.00018 31.8 5.4 81 97-182 17-99 (120)
37 PF02142 MGS: MGS-like domain 73.5 4.9 0.00011 30.9 3.7 41 135-175 51-94 (95)
38 PRK05234 mgsA methylglyoxal sy 73.5 7.1 0.00015 32.9 4.9 45 132-176 63-111 (142)
39 cd00532 MGS-like MGS-like doma 72.2 7.5 0.00016 30.8 4.6 46 132-177 55-105 (112)
40 smart00851 MGS MGS-like domain 71.8 5.5 0.00012 30.2 3.6 45 131-175 42-89 (90)
41 PRK05562 precorrin-2 dehydroge 71.5 16 0.00036 33.2 7.1 78 144-226 85-166 (223)
42 PRK11181 23S rRNA (guanosine-2 68.6 29 0.00064 31.4 8.2 70 129-200 4-76 (244)
43 TIGR01470 cysG_Nterm siroheme 64.7 23 0.0005 31.3 6.5 81 143-227 68-152 (205)
44 PF00009 GTP_EFTU: Elongation 64.0 35 0.00075 28.7 7.3 50 134-183 85-134 (188)
45 PF02421 FeoB_N: Ferrous iron 63.3 18 0.0004 31.0 5.4 48 138-185 72-119 (156)
46 PRK00087 4-hydroxy-3-methylbut 62.5 29 0.00062 36.0 7.7 74 144-220 206-280 (647)
47 COG1648 CysG Siroheme synthase 62.1 58 0.0013 29.2 8.7 57 145-204 73-133 (210)
48 PF00391 PEP-utilizers: PEP-ut 59.9 19 0.00041 27.0 4.4 18 161-178 43-60 (80)
49 TIGR00186 rRNA_methyl_3 rRNA m 59.4 53 0.0011 29.6 8.0 68 129-201 3-72 (237)
50 COG2355 Zn-dependent dipeptida 57.9 7.9 0.00017 37.1 2.5 87 131-236 218-305 (313)
51 COG1844 Uncharacterized protei 57.5 15 0.00032 30.8 3.7 85 147-233 3-104 (125)
52 TIGR00283 arch_pth2 peptidyl-t 57.1 84 0.0018 25.7 8.1 71 134-212 39-109 (115)
53 cd01424 MGS_CPS_II Methylglyox 56.3 25 0.00054 27.4 4.8 46 131-176 54-100 (110)
54 PRK01045 ispH 4-hydroxy-3-meth 56.3 47 0.001 31.6 7.4 69 147-218 214-282 (298)
55 COG0159 TrpA Tryptophan syntha 55.8 1.7E+02 0.0036 27.6 10.8 122 88-217 68-202 (265)
56 PRK13371 4-hydroxy-3-methylbut 55.4 77 0.0017 31.4 8.9 77 144-223 288-383 (387)
57 COG1419 FlhF Flagellar GTP-bin 54.6 44 0.00095 33.3 7.1 78 141-218 230-310 (407)
58 PRK10864 putative methyltransf 53.6 66 0.0014 31.2 8.0 70 128-200 109-181 (346)
59 TIGR03025 EPS_sugtrans exopoly 53.3 33 0.00071 33.3 6.0 55 129-183 173-227 (445)
60 TIGR03729 acc_ester putative p 53.3 39 0.00085 29.8 6.0 49 134-182 22-72 (239)
61 TIGR01544 HAD-SF-IE haloacid d 52.7 41 0.00088 31.6 6.3 36 79-114 55-96 (277)
62 PF01601 Corona_S2: Coronaviru 52.7 4.4 9.5E-05 41.9 -0.1 13 45-57 540-552 (610)
63 TIGR03023 WcaJ_sugtrans Undeca 52.6 32 0.00069 33.4 5.8 56 129-184 176-231 (451)
64 PF02401 LYTB: LytB protein; 52.5 70 0.0015 30.1 7.8 69 144-216 209-279 (281)
65 PRK06718 precorrin-2 dehydroge 52.2 64 0.0014 28.4 7.2 79 144-227 70-152 (202)
66 PRK13111 trpA tryptophan synth 51.6 67 0.0014 29.6 7.4 87 130-218 103-198 (258)
67 PRK10637 cysG siroheme synthas 51.4 44 0.00096 33.0 6.6 79 144-226 72-154 (457)
68 cd00952 CHBPH_aldolase Trans-o 48.0 2.3E+02 0.0051 26.4 10.6 103 105-216 63-185 (309)
69 PF02603 Hpr_kinase_N: HPr Ser 47.8 31 0.00067 28.2 4.2 34 142-178 79-112 (127)
70 COG0420 SbcD DNA repair exonuc 47.7 38 0.00082 32.3 5.4 47 133-180 29-84 (390)
71 TIGR00216 ispH_lytB (E)-4-hydr 47.1 92 0.002 29.4 7.7 68 145-215 209-277 (280)
72 PF00497 SBP_bac_3: Bacterial 46.7 1.1E+02 0.0023 25.0 7.3 89 128-233 136-225 (225)
73 COG0566 SpoU rRNA methylases [ 46.4 1.5E+02 0.0033 27.2 9.0 71 128-201 22-94 (260)
74 cd02430 PTH2 Peptidyl-tRNA hyd 45.9 1.4E+02 0.0031 24.4 7.7 69 136-212 41-109 (115)
75 PRK12360 4-hydroxy-3-methylbut 45.7 97 0.0021 29.2 7.6 69 144-216 209-279 (281)
76 PF03129 HGTP_anticodon: Antic 45.5 38 0.00082 25.2 4.1 50 164-218 45-94 (94)
77 KOG1615 Phosphoserine phosphat 45.5 35 0.00076 31.3 4.4 86 124-221 84-173 (227)
78 cd01483 E1_enzyme_family Super 44.7 42 0.00091 27.1 4.5 37 143-181 88-124 (143)
79 PRK03147 thiol-disulfide oxido 44.2 1.7E+02 0.0038 23.7 8.6 61 135-199 85-146 (173)
80 PF13241 NAD_binding_7: Putati 44.1 30 0.00065 26.9 3.4 35 144-180 60-94 (103)
81 PRK12723 flagellar biosynthesi 43.8 83 0.0018 30.8 7.1 73 144-216 206-281 (388)
82 PRK06628 lipid A biosynthesis 43.6 93 0.002 28.6 7.1 76 95-179 143-231 (290)
83 COG4029 Uncharacterized protei 42.9 73 0.0016 27.2 5.6 58 143-220 4-63 (142)
84 PRK10124 putative UDP-glucose 42.8 60 0.0013 32.2 6.1 54 130-183 189-242 (463)
85 PF14367 DUF4411: Domain of un 42.3 40 0.00087 28.7 4.2 31 148-178 119-152 (162)
86 COG0439 AccC Biotin carboxylas 41.7 1.7E+02 0.0037 29.4 9.1 109 147-259 4-127 (449)
87 PRK15116 sulfur acceptor prote 41.7 78 0.0017 29.5 6.3 62 142-211 119-180 (268)
88 COG0549 ArcC Carbamate kinase 41.4 62 0.0013 31.1 5.6 118 117-247 155-284 (312)
89 cd01879 FeoB Ferrous iron tran 41.4 54 0.0012 25.7 4.6 41 143-183 73-113 (158)
90 TIGR02661 MauD methylamine deh 41.0 1.9E+02 0.0041 24.8 8.2 76 141-221 101-184 (189)
91 cd04165 GTPBP1_like GTPBP1-lik 39.6 59 0.0013 28.9 5.0 49 135-183 100-150 (224)
92 COG1537 PelA Predicted RNA-bin 38.8 78 0.0017 31.0 5.9 61 128-188 272-338 (352)
93 PF00899 ThiF: ThiF family; I 38.5 45 0.00098 26.8 3.8 43 134-180 84-126 (135)
94 cd01485 E1-1_like Ubiquitin ac 38.1 33 0.00072 30.0 3.1 39 144-184 113-151 (198)
95 PRK14722 flhF flagellar biosyn 37.9 4E+02 0.0086 26.1 10.7 59 143-201 166-225 (374)
96 PF00072 Response_reg: Respons 37.1 1.6E+02 0.0036 21.4 6.9 53 129-181 28-81 (112)
97 PF11823 DUF3343: Protein of u 36.9 1.7E+02 0.0036 21.4 6.4 29 160-188 14-42 (73)
98 cd07388 MPP_Tt1561 Thermus the 36.7 89 0.0019 28.2 5.7 46 136-182 23-73 (224)
99 KOG2486 Predicted GTPase [Gene 36.7 33 0.00072 33.0 3.0 49 135-183 210-260 (320)
100 PF03618 Kinase-PPPase: Kinase 36.4 1.2E+02 0.0026 28.2 6.6 49 148-197 55-105 (255)
101 PRK06731 flhF flagellar biosyn 36.2 3.5E+02 0.0075 25.2 9.7 73 144-216 103-181 (270)
102 CHL00200 trpA tryptophan synth 36.0 1.2E+02 0.0027 28.0 6.7 87 131-219 106-201 (263)
103 PF08534 Redoxin: Redoxin; In 36.0 1.4E+02 0.003 23.7 6.2 46 140-190 58-104 (146)
104 KOG1402 Ornithine aminotransfe 35.7 90 0.0019 30.9 5.8 34 218-255 297-330 (427)
105 cd01491 Ube1_repeat1 Ubiquitin 35.1 64 0.0014 30.4 4.7 41 144-186 105-145 (286)
106 PRK09932 glycerate kinase II; 34.7 3.3E+02 0.0071 26.9 9.6 97 128-228 264-371 (381)
107 COG0796 MurI Glutamate racemas 34.6 1.5E+02 0.0032 28.0 7.0 42 133-178 57-98 (269)
108 COG0761 lytB 4-Hydroxy-3-methy 34.6 2.9E+02 0.0064 26.5 8.9 74 145-220 213-286 (294)
109 cd00755 YgdL_like Family of ac 34.5 1.5E+02 0.0032 26.9 6.8 54 142-203 100-153 (231)
110 PRK01889 GTPase RsgA; Reviewed 33.9 51 0.0011 31.5 3.9 26 159-184 130-155 (356)
111 PRK00124 hypothetical protein; 33.8 86 0.0019 27.1 4.9 30 148-179 3-32 (151)
112 PRK06719 precorrin-2 dehydroge 33.5 2.5E+02 0.0054 23.7 7.6 81 144-229 70-154 (157)
113 COG2961 ComJ Protein involved 33.3 1.2E+02 0.0025 28.8 6.0 96 130-235 96-191 (279)
114 PF07905 PucR: Purine cataboli 33.3 1.3E+02 0.0027 24.2 5.6 47 136-184 65-112 (123)
115 PF15632 ATPgrasp_Ter: ATP-gra 33.2 86 0.0019 30.2 5.3 52 131-183 9-78 (329)
116 PF07085 DRTGG: DRTGG domain; 33.1 50 0.0011 25.5 3.1 39 136-178 54-92 (105)
117 cd05017 SIS_PGI_PMI_1 The memb 32.8 2E+02 0.0044 22.5 6.7 69 147-217 47-115 (119)
118 cd00862 ProRS_anticodon_zinc P 32.8 3E+02 0.0065 24.1 8.3 20 165-184 61-80 (202)
119 PTZ00408 NAD-dependent deacety 32.6 1.3E+02 0.0027 27.5 6.0 54 124-179 149-207 (242)
120 PF12850 Metallophos_2: Calcin 31.6 1E+02 0.0022 24.3 4.8 40 135-182 18-58 (156)
121 TIGR00619 sbcd exonuclease Sbc 31.4 1.1E+02 0.0024 27.6 5.5 20 135-154 30-49 (253)
122 TIGR03871 ABC_peri_MoxJ_2 quin 31.2 2.6E+02 0.0057 23.6 7.6 88 132-232 142-229 (232)
123 cd01857 HSR1_MMR1 HSR1/MMR1. 31.0 93 0.002 25.0 4.5 14 165-178 65-78 (141)
124 PRK05703 flhF flagellar biosyn 30.6 1.9E+02 0.0041 28.6 7.3 75 142-216 249-326 (424)
125 cd07396 MPP_Nbla03831 Homo sap 30.6 1.1E+02 0.0024 27.5 5.3 51 134-184 30-86 (267)
126 cd04104 p47_IIGP_like p47 (47- 30.2 1E+02 0.0023 26.2 4.9 38 146-183 82-119 (197)
127 COG1223 Predicted ATPase (AAA+ 29.8 54 0.0012 31.7 3.2 70 163-236 168-259 (368)
128 cd01492 Aos1_SUMO Ubiquitin ac 29.7 67 0.0015 28.1 3.7 39 144-184 110-148 (197)
129 PRK09590 celB cellobiose phosp 29.7 87 0.0019 25.1 4.0 49 129-179 35-83 (104)
130 PRK13234 nifH nitrogenase redu 29.7 3.7E+02 0.0081 24.7 8.8 116 131-248 160-291 (295)
131 PRK00098 GTPase RsgA; Reviewed 29.6 62 0.0013 30.0 3.6 44 138-181 105-151 (298)
132 cd01861 Rab6 Rab6 subfamily. 29.6 64 0.0014 25.5 3.2 40 145-184 73-118 (161)
133 PF01522 Polysacc_deac_1: Poly 29.5 2.5E+02 0.0054 21.3 6.5 36 144-179 4-39 (123)
134 PF13848 Thioredoxin_6: Thiore 29.4 1.8E+02 0.0038 23.7 6.0 72 146-221 53-126 (184)
135 TIGR03022 WbaP_sugtrans Undeca 29.3 1.3E+02 0.0028 29.3 5.9 53 132-184 176-229 (456)
136 PLN02591 tryptophan synthase 29.0 2.5E+02 0.0055 25.8 7.4 85 131-217 93-186 (250)
137 cd03420 SirA_RHOD_Pry_redox Si 28.8 1.8E+02 0.0038 21.1 5.2 40 136-178 16-57 (69)
138 cd01821 Rhamnogalacturan_acety 28.8 1.3E+02 0.0027 25.2 5.1 22 158-179 133-154 (198)
139 cd01822 Lysophospholipase_L1_l 28.8 1.5E+02 0.0034 23.8 5.5 45 133-177 90-141 (177)
140 KOG4175 Tryptophan synthase al 28.6 3E+02 0.0066 25.6 7.7 113 101-217 78-203 (268)
141 smart00857 Resolvase Resolvase 28.6 3E+02 0.0065 21.8 7.5 46 131-178 52-102 (148)
142 COG0352 ThiE Thiamine monophos 28.4 1.6E+02 0.0034 26.6 5.9 55 133-188 24-81 (211)
143 TIGR00583 mre11 DNA repair pro 28.3 1.3E+02 0.0029 29.6 5.8 23 133-155 31-53 (405)
144 cd01020 TroA_b Metal binding p 28.2 1.6E+02 0.0034 26.7 5.9 16 163-178 198-213 (264)
145 cd00757 ThiF_MoeB_HesA_family 28.1 59 0.0013 28.8 3.1 35 144-180 111-145 (228)
146 COG0370 FeoB Fe2+ transport sy 27.7 3.3E+02 0.0071 28.9 8.7 70 132-201 68-151 (653)
147 PLN02976 amine oxidase 27.6 30 0.00065 40.0 1.3 6 25-30 721-726 (1713)
148 cd05797 Ribosomal_L10 Ribosoma 27.2 3.6E+02 0.0078 22.3 8.6 108 133-246 9-126 (157)
149 PF02844 GARS_N: Phosphoribosy 27.2 89 0.0019 25.1 3.6 40 133-175 51-90 (100)
150 PRK06553 lipid A biosynthesis 27.2 3E+02 0.0064 25.5 7.7 54 95-157 162-216 (308)
151 PF14639 YqgF: Holliday-juncti 27.1 1.1E+02 0.0023 26.1 4.3 37 134-170 53-90 (150)
152 cd01423 MGS_CPS_I_III Methylgl 26.8 54 0.0012 25.8 2.4 42 134-175 61-105 (116)
153 cd03770 SR_TndX_transposase Se 26.7 1.8E+02 0.004 23.7 5.6 48 131-179 55-107 (140)
154 cd02988 Phd_like_VIAF Phosduci 26.6 4.1E+02 0.0089 23.2 8.1 52 149-201 109-162 (192)
155 COG0486 ThdF Predicted GTPase 26.5 3.3E+02 0.0071 27.7 8.2 87 131-222 273-378 (454)
156 cd07402 MPP_GpdQ Enterobacter 26.4 2E+02 0.0044 24.7 6.1 50 133-183 27-82 (240)
157 COG1503 eRF1 Peptide chain rel 26.4 3.5E+02 0.0076 27.1 8.3 29 128-156 295-323 (411)
158 PRK12454 carbamate kinase-like 26.0 2E+02 0.0043 27.6 6.4 35 117-154 156-194 (313)
159 PF00578 AhpC-TSA: AhpC/TSA fa 25.9 2E+02 0.0043 21.8 5.4 63 134-201 49-118 (124)
160 PF00205 TPP_enzyme_M: Thiamin 25.9 58 0.0013 26.0 2.4 45 134-178 2-46 (137)
161 PRK09453 phosphodiesterase; Pr 25.9 1.6E+02 0.0034 24.8 5.2 46 133-182 16-74 (182)
162 cd01493 APPBP1_RUB Ubiquitin a 25.8 76 0.0016 31.5 3.6 40 144-185 112-151 (425)
163 PRK00099 rplJ 50S ribosomal pr 25.6 4.1E+02 0.009 22.5 8.5 109 133-247 10-128 (172)
164 PF00462 Glutaredoxin: Glutare 25.6 2.2E+02 0.0048 19.3 5.1 46 134-180 13-58 (60)
165 TIGR00408 proS_fam_I prolyl-tR 25.6 3.4E+02 0.0074 27.1 8.2 45 135-183 306-350 (472)
166 COG2047 Uncharacterized protei 25.5 1.1E+02 0.0023 28.7 4.2 67 125-191 55-136 (258)
167 PRK03980 flap endonuclease-1; 25.2 1.2E+02 0.0026 28.5 4.7 39 151-190 77-117 (292)
168 PF09875 DUF2102: Uncharacteri 25.0 1.9E+02 0.0041 23.7 5.1 53 147-219 1-55 (104)
169 PF13344 Hydrolase_6: Haloacid 24.9 2.3E+02 0.0049 22.0 5.5 44 129-174 15-58 (101)
170 cd07392 MPP_PAE1087 Pyrobaculu 24.9 1.6E+02 0.0034 24.0 4.9 43 139-182 18-63 (188)
171 cd07400 MPP_YydB Bacillus subt 24.5 1.9E+02 0.0041 22.8 5.2 50 133-183 24-80 (144)
172 TIGR03499 FlhF flagellar biosy 24.4 1.5E+02 0.0033 27.3 5.1 47 143-189 223-269 (282)
173 PRK13010 purU formyltetrahydro 24.3 1.8E+02 0.0039 27.3 5.7 49 124-178 94-148 (289)
174 cd01147 HemV-2 Metal binding p 24.2 3.7E+02 0.0081 23.2 7.4 51 137-190 67-127 (262)
175 PTZ00137 2-Cys peroxiredoxin; 24.1 4.9E+02 0.011 24.2 8.4 101 136-238 124-248 (261)
176 PTZ00030 60S ribosomal protein 24.1 5.8 0.00013 33.1 -3.8 54 159-217 52-106 (121)
177 cd01894 EngA1 EngA1 subfamily. 23.9 1.8E+02 0.004 22.4 4.9 39 145-183 77-117 (157)
178 PF02401 LYTB: LytB protein; 23.9 2.8E+02 0.006 26.1 6.8 100 117-223 85-185 (281)
179 PRK06027 purU formyltetrahydro 23.7 1.1E+02 0.0023 28.7 4.0 49 125-179 91-145 (286)
180 KOG0238 3-Methylcrotonyl-CoA c 23.6 1.8E+02 0.0039 30.4 5.8 101 158-259 8-123 (670)
181 PRK08661 prolyl-tRNA synthetas 23.6 3.8E+02 0.0083 26.7 8.1 21 164-184 337-357 (477)
182 cd04164 trmE TrmE (MnmE, ThdF, 23.5 1.4E+02 0.003 23.0 4.1 42 144-185 80-121 (157)
183 PRK04322 peptidyl-tRNA hydrola 23.5 4E+02 0.0088 21.6 7.5 68 137-212 40-107 (113)
184 cd02429 PTH2_like Peptidyl-tRN 23.5 3.6E+02 0.0078 22.2 6.6 57 142-211 53-109 (116)
185 cd04235 AAK_CK AAK_CK: Carbama 23.3 1.4E+02 0.0029 28.6 4.7 30 121-153 160-189 (308)
186 PRK10966 exonuclease subunit S 23.3 1.9E+02 0.0042 28.3 5.9 21 135-155 30-50 (407)
187 TIGR03603 cyclo_dehy_ocin bact 23.1 1.1E+02 0.0024 29.0 4.1 39 136-176 145-183 (318)
188 PRK11148 cyclic 3',5'-adenosin 23.1 2.3E+02 0.005 25.5 6.0 50 133-182 42-96 (275)
189 TIGR00543 isochor_syn isochori 22.7 2.5E+02 0.0055 27.0 6.5 94 131-224 94-204 (351)
190 PF03808 Glyco_tran_WecB: Glyc 22.7 3.2E+02 0.0069 23.2 6.5 66 152-217 29-99 (172)
191 PRK14723 flhF flagellar biosyn 22.6 2E+02 0.0044 31.0 6.2 61 142-202 213-273 (767)
192 TIGR00262 trpA tryptophan synt 22.5 2.9E+02 0.0063 25.3 6.6 106 130-242 101-215 (256)
193 COG1445 FrwB Phosphotransferas 22.4 51 0.0011 27.7 1.4 45 131-183 43-88 (122)
194 PRK01045 ispH 4-hydroxy-3-meth 22.3 2.3E+02 0.0049 27.0 6.0 95 117-221 87-184 (298)
195 PHA02546 47 endonuclease subun 22.2 2.1E+02 0.0045 27.1 5.7 50 133-182 28-87 (340)
196 COG1105 FruK Fructose-1-phosph 22.2 3.1E+02 0.0067 26.4 6.9 50 133-191 148-197 (310)
197 PF02571 CbiJ: Precorrin-6x re 22.2 1.9E+02 0.0041 26.6 5.2 48 132-179 54-101 (249)
198 KOG4201 Anthranilate synthase 22.2 1.8E+02 0.0039 27.3 5.0 68 147-216 163-235 (289)
199 TIGR00040 yfcE phosphoesterase 22.0 2.3E+02 0.005 23.0 5.4 46 134-183 17-63 (158)
200 PF02347 GDC-P: Glycine cleava 21.8 3E+02 0.0065 27.6 6.9 104 93-202 97-208 (429)
201 PRK08057 cobalt-precorrin-6x r 21.8 2.2E+02 0.0048 26.1 5.6 47 132-178 53-99 (248)
202 smart00187 INB Integrin beta s 21.8 3.9E+02 0.0085 26.9 7.7 82 131-221 208-337 (423)
203 cd02407 PTH2_family Peptidyl-t 21.6 4.4E+02 0.0096 21.4 7.3 68 136-211 41-108 (115)
204 COG2129 Predicted phosphoester 21.6 2.2E+02 0.0047 26.3 5.4 16 230-245 156-172 (226)
205 cd01866 Rab2 Rab2 subfamily. 21.5 1.2E+02 0.0027 24.5 3.6 41 144-184 76-122 (168)
206 PF05325 DUF730: Protein of un 21.5 1.5E+02 0.0032 24.4 3.8 46 147-201 28-73 (122)
207 PF10111 Glyco_tranf_2_2: Glyc 21.5 2.7E+02 0.0058 25.2 6.1 66 148-213 37-111 (281)
208 TIGR02356 adenyl_thiF thiazole 21.5 1.1E+02 0.0023 26.8 3.3 35 143-179 110-144 (202)
209 TIGR02765 crypto_DASH cryptoch 21.3 5.7E+02 0.012 24.7 8.7 51 126-176 76-130 (429)
210 cd02966 TlpA_like_family TlpA- 21.2 3.1E+02 0.0068 19.5 6.1 54 144-201 52-107 (116)
211 PRK06278 cobyrinic acid a,c-di 21.1 2.1E+02 0.0046 28.9 5.7 53 125-177 351-416 (476)
212 TIGR00715 precor6x_red precorr 20.9 1.8E+02 0.0039 26.8 4.9 46 133-178 54-99 (256)
213 cd01301 rDP_like renal dipepti 20.9 4.3E+02 0.0093 24.9 7.5 70 153-235 237-307 (309)
214 cd01892 Miro2 Miro2 subfamily. 20.7 1.4E+02 0.003 24.5 3.7 42 143-184 76-121 (169)
215 COG5482 Uncharacterized conser 20.7 3.2E+02 0.007 24.9 6.2 94 132-243 51-149 (229)
216 PF00425 Chorismate_bind: chor 20.6 5.4E+02 0.012 23.3 7.9 82 132-216 8-108 (257)
217 cd07399 MPP_YvnB Bacillus subt 20.5 5.6E+02 0.012 22.2 7.8 50 133-183 24-81 (214)
218 COG3809 Uncharacterized protei 20.5 48 0.001 26.1 0.9 32 203-234 32-73 (88)
219 PF04378 RsmJ: Ribosomal RNA s 20.5 88 0.0019 28.9 2.7 95 129-234 64-159 (245)
220 KOG0368 Acetyl-CoA carboxylase 20.5 87 0.0019 36.5 3.1 57 145-201 1546-1613(2196)
221 PF03279 Lip_A_acyltrans: Bact 20.4 5E+02 0.011 23.4 7.7 45 133-179 181-239 (295)
222 cd03017 PRX_BCP Peroxiredoxin 20.3 4.2E+02 0.009 20.5 7.4 49 138-191 51-100 (140)
223 PLN02726 dolichyl-phosphate be 20.2 4.8E+02 0.01 22.5 7.2 71 147-217 42-120 (243)
No 1
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=100.00 E-value=1.6e-103 Score=711.72 Aligned_cols=253 Identities=58% Similarity=0.957 Sum_probs=244.4
Q ss_pred Ccccccch---hhhhhccccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCcccccccccCC
Q 024981 6 GVKALVAA---SKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLD 82 (259)
Q Consensus 6 ~~~~~~~~---~~~~~k~~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ld 82 (259)
+++++++| ++.++++++|||||+|||||||||||||+|||||||+||+||||||||+||++||||||+||||+++||
T Consensus 7 ~~k~~~ap~~~~~~~~~k~~~plfe~rpknf~iG~~iqpkrdlsrfvkwP~yirlQRqk~iL~~RlKvPp~inqF~~~ld 86 (266)
T PTZ00365 7 KSKKLPAPAPLKKSKKKKQKHPLFEKTPRNFRIGGDIRPKVDLSRYVRWPRYILLQRQRRVLLQRLKVPPALNQFTYTLD 86 (266)
T ss_pred cccccCCCccccccccccccCcccccCccccCcCCCCCCCccchhhcccchhhhHHHHHHHHHHhcCCCccHhhhhhhhc
Confidence 45555555 344567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHh
Q 024981 83 KNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVW 162 (259)
Q Consensus 83 ~~~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~ 162 (259)
+|+|+|||+|++||||||++||++||+..|+++|+|++.++++|.+|.+|+|+|+++|++++++|||||+||||++++.|
T Consensus 87 k~~a~~lfkll~KYrPEtk~~kk~RL~~~A~~~a~g~~~~~kkp~~vk~Gin~VtklIekkKAkLVIIA~DVsP~t~kk~ 166 (266)
T PTZ00365 87 KNQASQLLRLLSKYKPETRAEKKARLLKEAEKAAAGEEVESKKPFMLKYGLNHVTDLVEYKKAKLVVIAHDVDPIELVCF 166 (266)
T ss_pred HhhHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhhHHHHHHHHhCCccEEEEeCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999779999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHH
Q 024981 163 LPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAK 242 (259)
Q Consensus 163 LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~ 242 (259)
||+||++|+||||+++|+++||+++|++++++|||+|+++||+++|++||++|++|||| |||+|+|||||+||.||+++
T Consensus 167 LP~LC~k~~VPY~iv~sK~eLG~AIGkktraVVAItdV~~EDk~~l~~lv~~~~~~~nd-~~e~rr~wGG~~~g~ks~~~ 245 (266)
T PTZ00365 167 LPALCRKKEVPYCIIKGKSRLGKLVHQKTAAVVAIDNVRKEDQAEFDNLCKNFRAMFND-NSELRRRWGGGIMGIKSQHV 245 (266)
T ss_pred HHHHHhccCCCEEEECCHHHHHHHhCCCCceEEEecccCHHHHHHHHHHHHHHHHhccc-cHhhhhhcCCCccChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcC
Q 024981 243 TKAKEKLLAKEAAQRMS 259 (259)
Q Consensus 243 ~~k~~k~~~~e~~~k~~ 259 (259)
++++||++++|+|+|+|
T Consensus 246 ~~k~~k~~~~e~~~k~~ 262 (266)
T PTZ00365 246 IAKREKLIAMENAKKLG 262 (266)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999975
No 2
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=100.00 E-value=1.5e-98 Score=677.70 Aligned_cols=235 Identities=45% Similarity=0.777 Sum_probs=224.8
Q ss_pred ccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCcccccccccCChhhHHHHHHHhhcCCccc
Q 024981 21 VVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPED 100 (259)
Q Consensus 21 ~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ld~~~a~~l~kl~~kyrPE~ 100 (259)
...||||+|||||||||||||+|||||||+||+||||||||+||++||||||+||||+++||+|+|+|||+|++||||||
T Consensus 23 ~~~~lfe~rpknf~ig~di~pkrdlsrfvkwP~yirlQrqk~iL~~rlKvPp~inqF~~~ldk~~a~~lfkll~KYrPEt 102 (263)
T PTZ00222 23 AAASHFVARPKNFGIGQDVPYARDLSRFMRWPTFVTMQRKKRVLQRRLKVPPALNQFTKVLDRSSRNELLKLIKKYAPET 102 (263)
T ss_pred CcchhhhcCccccCCCCCCCCCccchhhhcchhhhhHHHHHHHHHHhcCCCchHhhhhhhhhHhhHHHHHHHHHHcCCcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CC-CCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 101 RAAKKERLLKKAQAEAEGKT-VE-SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~-~~-~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
++||++||+..|+++++|+. .+ +++|.+|++|+++|+++|++++++|||||+||||++++.|||+||++|+||||+++
T Consensus 103 k~~kk~Rl~~~A~~~~~g~~~~~~~kkp~~LvsG~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVk 182 (263)
T PTZ00222 103 RKARRDRLHKVAEEKKKDPKKTVSTKAPLAVVTGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVK 182 (263)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCeeccCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999999999999998 44 49999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHHHHHHH-HHHHHHHH
Q 024981 179 GKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKE-KLLAKEAA 255 (259)
Q Consensus 179 sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~~~k~~-k~~~~e~~ 255 (259)
|+++||++||+++|+||||+|+|+||+++|++||+++++||||+|||+|+|||||+||.||+++++++. ++.....|
T Consensus 183 tKaeLG~AIGkKtravVAItD~g~ed~~~l~~lv~~~~~~~nd~~~e~rr~wGGg~~g~ks~~~~~k~~a~~~~~~~~ 260 (263)
T PTZ00222 183 DMARLGDAIGRKTATCVAITDVNAEDEAALKNLIRSVNARFLSRSDVIRRQWGGLQLSLRSRAELRKKHARNAGVDAA 260 (263)
T ss_pred CHHHHHHHHCCCCCeEEEEeeCCcccHHHHHHHHHHHHHhhccchHHHHhhccCCccCHHHHHHHHHHHHHhcccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999754 44443333
No 3
>KOG3166 consensus 60S ribosomal protein L7A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-75 Score=513.96 Aligned_cols=208 Identities=59% Similarity=0.977 Sum_probs=197.3
Q ss_pred hccccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCcccccccccCChhhHHHHHHHhhcCC
Q 024981 18 TEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYR 97 (259)
Q Consensus 18 ~k~~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ld~~~a~~l~kl~~kyr 97 (259)
+++++|||||+||+||||||||||+||||+||+||+||++|||++||+ ||||||+||||+++||.++++++++|+||||
T Consensus 1 ~~k~~~~l~~~rp~nfg~gq~iqpk~dlt~~~k~p~~i~lq~q~~~l~-~lkvpp~i~qf~~~l~~~~a~~~~kl~hkyr 79 (209)
T KOG3166|consen 1 AKKVVNPLFEKRPKNFGIGQDIQPKRDLTCFVKWPRYIRLQRQKAILY-RLKVPPAINQFTQALDLQTATKLLKLAHKYR 79 (209)
T ss_pred CCcccchhHHhcccccCcccccccccccccceeccHHHHhhhchhhhe-eeccCcchhhhhcccchHHHHHHHHHHhhcC
Confidence 368999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHcCCC-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 98 PEDRAAKKERLLKKAQAEAEGKT-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 98 PE~k~eK~~rLl~~A~k~aaGk~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
||+++++.++++..+ +++|++ +++++|+++..|+|+|+++||++||+|||+|||+||+|+++|||+||++| +
T Consensus 80 P~~~~~~~~r~~a~~--~~~~kg~v~tkrp~~~~~gvnTVttLVenKKAQLVV~ahDvDPIELVvFLPaLC~km-----i 152 (209)
T KOG3166|consen 80 PETKKKKKQRLLAEA--KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKM-----I 152 (209)
T ss_pred chhhhhhhhhHHHHH--HHHhccCCCcCCCcccccCcceEeehhhccccceeEEecccCchhheeecHHhhhhh-----c
Confidence 998888888877654 457777 99999999999999999999999999999999999999999999999999 6
Q ss_pred eCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHHHHHHHHH
Q 024981 177 VKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKL 249 (259)
Q Consensus 177 v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~~~k~~k~ 249 (259)
|+++ +++||++||+ +++||+++|++|+|+|++||||||||||+|||| ||+++ ++|||
T Consensus 153 vk~~-------~~kT~t~~a~--v~~edk~~l~kl~e~i~tn~ndrydei~~hWgg-----ks~a~--kleka 209 (209)
T KOG3166|consen 153 VKGK-------HRKTCTTVAF--VNSEDKGALAKLVEAIRTNYNDRYDEICRHWGG-----KSVAH--KLEKA 209 (209)
T ss_pred cccc-------ccceeeeeee--echhhHHHHHHHHHHHhcccccchhhhhhcccC-----HhHHH--HhhcC
Confidence 6776 9999999999 999999999999999999999999999999999 99999 88764
No 4
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.3e-24 Score=173.95 Aligned_cols=99 Identities=43% Similarity=0.563 Sum_probs=94.6
Q ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCC
Q 024981 94 LKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIP 173 (259)
Q Consensus 94 ~kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VP 173 (259)
.-+.|++..++..++++.|.+ +|+ |+.|+|+|+++|++|+++|||||+|+||.+++.|+|.+|++++||
T Consensus 4 ~~~~~~~~~~k~l~~l~~a~~--~~k---------i~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vp 72 (116)
T COG1358 4 KPLAPEMLEQKALSLLGKASR--AGK---------LKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVP 72 (116)
T ss_pred cccCcHHHHHHHHHHHHHHHh--cCC---------chhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 346899999999999999998 888 999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchhhhhhcCCCeEEEEEeecCcc
Q 024981 174 YCIVKGKARLGVIVHKKTASVLCLTTVKNE 203 (259)
Q Consensus 174 y~~v~sK~~LG~avGkk~~a~Vaitd~g~e 203 (259)
|++|+|+.+||+++|...+++++++|.+..
T Consensus 73 yv~V~sk~~LG~a~g~~~~~vv~i~~~~~~ 102 (116)
T COG1358 73 YVYVGSKKELGKAVGKEVRKVVAIVDKGFA 102 (116)
T ss_pred EEEeCCHHHHHHHhCCCcceeEEEeehhhh
Confidence 999999999999999999899999999864
No 5
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=99.91 E-value=1.3e-23 Score=171.22 Aligned_cols=108 Identities=39% Similarity=0.581 Sum_probs=97.8
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe
Q 024981 98 PEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 98 PE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v 177 (259)
|+...+|.++||++|.+ +|+ +++|+++|+++|++|+++|||||+|+||+++..+++.+|++++|||+++
T Consensus 7 ~~~l~~ki~~lL~la~r--agk---------l~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 7 PEELANKALEAVEKARE--TGK---------IKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred cHHHHHHHHHHHHHHHH--cCC---------EeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 45577899999999999 998 9999999999999999999999999999988899999999999999999
Q ss_pred CCcchhhhhhcCC-CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 178 KGKARLGVIVHKK-TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 178 ~sK~~LG~avGkk-~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
+++.+||++||++ .+++|||+|.|..+. .+++|.+.|++
T Consensus 76 ~sk~eLG~a~Gk~~~~svvaI~d~g~a~~-~~~~~~~~i~~ 115 (117)
T TIGR03677 76 KKKEDLGAAAGLEVGAASAAIVDEGKAEE-LLKEIIEKVEA 115 (117)
T ss_pred CCHHHHHHHhCCCCCeEEEEEEchhhhHH-HHHHHHHHHHh
Confidence 9999999999996 699999999986443 56777777664
No 6
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=99.90 E-value=3.2e-23 Score=170.21 Aligned_cols=109 Identities=37% Similarity=0.528 Sum_probs=98.8
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 97 RPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
-|+...+|.++||++|.+ +|+ |++|.++|+++|++|+++|||||.|+||+++..+++.+|++++|||++
T Consensus 10 ~~~~l~~ki~~lL~la~r--agk---------lv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~ 78 (122)
T PRK04175 10 VPEELAEKALEAVEKARD--TGK---------IKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVY 78 (122)
T ss_pred CCHHHHHHHHHHHHHHHH--cCC---------EeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 566678899999999999 899 999999999999999999999999999999888999999999999999
Q ss_pred eCCcchhhhhhcCC-CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 177 VKGKARLGVIVHKK-TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 177 v~sK~~LG~avGkk-~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
++++++||++||++ .+++|+|+|.|. .+..++++.+.|++
T Consensus 79 ~~tk~eLG~a~Gk~~~~svvaI~d~g~-a~~~~~~~~~~i~~ 119 (122)
T PRK04175 79 VPSKKDLGKAAGLEVGAAAAAIVDAGK-AKELVEDIVEKVNE 119 (122)
T ss_pred ECCHHHHHHHhCCCCCeEEEEEechhh-hHHHHHHHHHHHHH
Confidence 99999999999999 599999999985 34456777777664
No 7
>PRK07714 hypothetical protein; Provisional
Probab=99.81 E-value=2.5e-19 Score=141.85 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 102 AAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 102 ~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.+|.+++|++|.+ +|+ +++|.+.|.++|++++++|||+|+|++|. ...++..+|+.++|||+++++++
T Consensus 3 ~~~~~~~Lgla~r--aGk---------~v~G~~~v~~al~~g~~~lViiA~D~s~~-~~~ki~~~~~~~~vp~~~~~sk~ 70 (100)
T PRK07714 3 MSDWKSFLGLANR--ARK---------VISGEELVLKEVRSGKAKLVLLSEDASVN-TTKKITDKCTYYNVPMRKVENRQ 70 (100)
T ss_pred HHHHHHHHHHHHH--hCC---------eeecHHHHHHHHHhCCceEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEeCCHH
Confidence 4689999999999 999 99999999999999999999999999996 56779999999999999999999
Q ss_pred hhhhhhcCCCeEEEEEeecCc
Q 024981 182 RLGVIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 182 ~LG~avGkk~~a~Vaitd~g~ 202 (259)
+||++||+..++++||+|.|.
T Consensus 71 eLG~a~Gk~~~~~vai~d~g~ 91 (100)
T PRK07714 71 QLGHAIGKDERVVVAVLDEGF 91 (100)
T ss_pred HHHHHhCCCcceEEEEeCchh
Confidence 999999999888999999984
No 8
>PRK07283 hypothetical protein; Provisional
Probab=99.79 E-value=8.2e-19 Score=138.81 Aligned_cols=88 Identities=25% Similarity=0.250 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 102 AAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 102 ~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.+|.+++|++|++ ||+ |++|.+.|.++|++++++|||+|+|+|++. ...+...|++++||++.+++++
T Consensus 3 ~~~~l~~LglA~r--aGk---------lv~G~~~v~~aik~gk~~lVi~A~Das~~~-~kk~~~~~~~~~Vp~~~~~t~~ 70 (98)
T PRK07283 3 KQKISNLLGLAQR--AGR---------IISGEELVVKAIQSGQAKLVFLANDAGPNL-TKKVTDKSNYYQVEVSTVFSTL 70 (98)
T ss_pred HHHHHHHHHHHHH--hCC---------eeEcHHHHHHHHHcCCccEEEEeCCCCHHH-HHHHHHHHHHcCCCEEEeCCHH
Confidence 4799999999999 999 999999999999999999999999999965 4668999999999999999999
Q ss_pred hhhhhhcCCCeEEEEEeecCc
Q 024981 182 RLGVIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 182 ~LG~avGkk~~a~Vaitd~g~ 202 (259)
+||++||+. +++|||+|.|.
T Consensus 71 eLG~a~Gk~-~~vvai~d~g~ 90 (98)
T PRK07283 71 ELSAAVGKP-RKVLAVTDAGF 90 (98)
T ss_pred HHHHHhCCC-ceEEEEeChhH
Confidence 999999996 68899999984
No 9
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=99.79 E-value=8.4e-19 Score=139.11 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe-CCcchhh
Q 024981 106 ERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV-KGKARLG 184 (259)
Q Consensus 106 ~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v-~sK~~LG 184 (259)
.+.|.+|.+ +|+ +++|.++|+++|++++++|||||+|+++ +...+|+.+|++++|||+.+ +++.+||
T Consensus 5 ~~~l~~a~r--agk---------l~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~~~tk~eLG 72 (99)
T PRK01018 5 NRELRVAVD--TGK---------VILGSKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEYEGSSVELG 72 (99)
T ss_pred HHHHHHHHH--cCC---------EEEcHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCCHHHHH
Confidence 345788888 999 9999999999999999999999999977 56688999999999998775 8999999
Q ss_pred hhhcCCC-eEEEEEeecCc
Q 024981 185 VIVHKKT-ASVLCLTTVKN 202 (259)
Q Consensus 185 ~avGkk~-~a~Vaitd~g~ 202 (259)
++||++. +++|+|+|.|.
T Consensus 73 ~a~Gk~~~~~~vaI~D~G~ 91 (99)
T PRK01018 73 TLCGKPFTVSALAIVDPGE 91 (99)
T ss_pred HHhCCCCCEEEEEEecCCH
Confidence 9999996 79999999983
No 10
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=99.79 E-value=7.9e-19 Score=141.72 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=85.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEE
Q 024981 96 YRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 96 yrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~ 175 (259)
-+-.+++.-..++|++|.+ +|+ +++|.++|+++|++|+++|||||.|++++.. ..|..+|+.++||++
T Consensus 4 ~~~~~~~~~i~~~Lgla~r--aGK---------lv~G~~~vlkalk~gkaklViiA~D~~~~~k-kki~~~~~~~~Vpv~ 71 (108)
T PTZ00106 4 KKKKKAQESINSKLQLVMK--SGK---------YTLGTKSTLKALRNGKAKLVIISNNCPPIRR-SEIEYYAMLSKTGVH 71 (108)
T ss_pred ccccccHhhHHHHHHHHHH--hCC---------eeecHHHHHHHHHcCCeeEEEEeCCCCHHHH-HHHHHHHhhcCCCEE
Confidence 3445566778999999999 999 9999999999999999999999999999654 668999999999998
Q ss_pred E-eCCcchhhhhhcCCCeE-EEEEeecCccc
Q 024981 176 I-VKGKARLGVIVHKKTAS-VLCLTTVKNED 204 (259)
Q Consensus 176 ~-v~sK~~LG~avGkk~~a-~Vaitd~g~eD 204 (259)
. ++++++||++||+..++ +|||+|.|..+
T Consensus 72 ~~~~t~~eLG~A~Gk~~r~svvaI~D~G~a~ 102 (108)
T PTZ00106 72 HYAGNNNDLGTACGRHFRVSVMSITDAGDSD 102 (108)
T ss_pred EeCCCHHHHHHHhCCccCeEEEEEeCcchHH
Confidence 5 69999999999998755 89999999543
No 11
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=99.78 E-value=9e-19 Score=135.60 Aligned_cols=89 Identities=35% Similarity=0.561 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 104 KKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 104 K~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+..++|+.|.+ +|+ ++.|+++|+++|++++++|||||+|++|.....+++.+|++++|||+++.|+.+|
T Consensus 2 ~i~~~l~~a~~--~~~---------lv~G~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eL 70 (95)
T PF01248_consen 2 KIYKLLKLARK--AGR---------LVKGIKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEEL 70 (95)
T ss_dssp HHHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHH
T ss_pred hHHHHHHHHHh--cCC---------EEEchHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHH
Confidence 56788999988 787 9999999999999999999999999999999888999999999999999999999
Q ss_pred hhhhcCCC-eEEEEEeecCcc
Q 024981 184 GVIVHKKT-ASVLCLTTVKNE 203 (259)
Q Consensus 184 G~avGkk~-~a~Vaitd~g~e 203 (259)
|+++|+.+ +++++|+|.+..
T Consensus 71 G~~~g~~~~~~~~~i~d~~~a 91 (95)
T PF01248_consen 71 GRACGKKRPVSALAIKDAGDA 91 (95)
T ss_dssp HHHTTSSSTSSEEEEEESTTH
T ss_pred HHHHCCCCcEEEEEEECcccc
Confidence 99999996 789999999853
No 12
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=99.77 E-value=3.9e-18 Score=136.72 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 102 AAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 102 ~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.++.++||++|++ ||+ +++|.+.|.++|++++++|||+|.|++++.. ..|..+|+.++||++.+++++
T Consensus 2 ~~k~l~lLglA~r--AGk---------lv~G~~~v~~aik~gk~~lVI~A~D~s~~~k-kki~~~~~~~~vp~~~~~t~~ 69 (104)
T PRK05583 2 MNKFLNFLGLTKK--AGK---------LLEGYNKCEEAIKKKKVYLIIISNDISENSK-NKFKNYCNKYNIPYIEGYSKE 69 (104)
T ss_pred hHHHHHHHHHHHH--hCC---------eeecHHHHHHHHHcCCceEEEEeCCCCHhHH-HHHHHHHHHcCCCEEEecCHH
Confidence 4689999999999 999 9999999999999999999999999999765 558999999999999999999
Q ss_pred hhhhhhcCCCeEEEEEeecCc
Q 024981 182 RLGVIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 182 ~LG~avGkk~~a~Vaitd~g~ 202 (259)
+||.+||+..++++||+|.|.
T Consensus 70 eLg~a~Gk~~~~~iai~d~g~ 90 (104)
T PRK05583 70 ELGNAIGRDEIKILGVKDKNM 90 (104)
T ss_pred HHHHHhCCCCeEEEEEeChHH
Confidence 999999999999999999884
No 13
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification]
Probab=99.74 E-value=7.1e-18 Score=141.22 Aligned_cols=89 Identities=26% Similarity=0.486 Sum_probs=84.7
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHH
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEF 208 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l 208 (259)
|..|+.+|.+.|++|.-.|+|||.|++|+++..|||.||+++||||+++.|++.||.+.|.++.+|+.|+..+.|.++.+
T Consensus 60 lrrGvKevqK~vrkGeKGl~VlAgd~sPiDvi~HlP~lCEd~~vPYvy~psk~dlg~A~~~krpt~~v~v~p~~eyke~y 139 (153)
T KOG3167|consen 60 LRRGVKEVQKRVRKGEKGLCVLAGDTSPIDVITHLPALCEDRGVPYVYTPSKEDLGAAGGTKRPTCCVFVKPGGEYKELY 139 (153)
T ss_pred HHHHHHHHHHHHhcCCcceEEEecCCccHHHHhccchhhhccCCCccccccHHHHHHhcCCCCCceEEEEeeChhHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999988888999998889999
Q ss_pred HHHHHHHHH
Q 024981 209 SRILEAIKA 217 (259)
Q Consensus 209 ~klve~i~~ 217 (259)
++++|.+..
T Consensus 140 dev~eel~~ 148 (153)
T KOG3167|consen 140 DEVLEELEA 148 (153)
T ss_pred HHHHHHHHh
Confidence 999887764
No 14
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=99.73 E-value=2.2e-17 Score=127.10 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=64.7
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEe
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLT 198 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vait 198 (259)
+++|.++|+++|++|+++|||||.|++|+ +..+|+.+|++++|||++++|+.+||++||++. ++++||+
T Consensus 12 l~~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~Vp~~~~~s~~eLG~a~G~~~~~a~~ai~ 81 (82)
T PRK13602 12 IVIGTKQTVKALKRGSVKEVVVAEDADPR-LTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAII 81 (82)
T ss_pred EEEcHHHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCcCEEEEEEe
Confidence 99999999999999999999999999995 778899999999999999999999999999997 6677764
No 15
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=99.69 E-value=6.6e-17 Score=125.57 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=64.4
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEe
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLT 198 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vait 198 (259)
++.|+++++++|++|.+++||||.|+||. ++.+||.+|+++||||+++.|+.+||++||..+ ++++|++
T Consensus 14 ~vvG~kqt~Kai~kg~~~~v~iA~Da~~~-vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi~V~aa~aai~ 83 (84)
T PRK13600 14 FVVGLKETLKALKKDQVTSLIIAEDVEVY-LMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIVALI 83 (84)
T ss_pred ceeeHHHHHHHHhcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCcCeEEEEEe
Confidence 67899999999999999999999999985 789999999999999999999999999999996 6677764
No 16
>PRK09190 hypothetical protein; Provisional
Probab=99.69 E-value=4.2e-16 Score=139.76 Aligned_cols=139 Identities=23% Similarity=0.215 Sum_probs=113.3
Q ss_pred CCCCCCCcccccccCcc----------------eeh-------hhhhhHHHhhhccCCcccccccccCChhhHHHHHHHh
Q 024981 37 GALPPKKDLTRFVRWPT----------------QVN-------IQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKML 93 (259)
Q Consensus 37 ~~i~pkrdl~~fvkwp~----------------yi~-------lqrq~~il~~~lkvpp~inqf~~~ld~~~a~~l~kl~ 93 (259)
+-..|+.+|-|||+=|. ||. .=.++..|.+.||.+-.+ +.+...+|-.++
T Consensus 23 r~~~~k~~LiR~v~~~dg~v~~D~~~k~pGRGaYvc~~~~c~~~A~kkk~l~Ralk~~v~v-------~~~l~~~l~~~l 95 (220)
T PRK09190 23 REVGPPDELIRFVVGPDGQVVPDLKRKLPGRGCWVSADRAAVEKAVAKKLFARAAKADVKV-------PPDLADLVEALL 95 (220)
T ss_pred CCccCHHHcEEEEEcCCCcEEECCCCCCCCCEEEEcCCHHHHHHHHHhChhHHHhCCCCCC-------CHHHHHHHHHHH
Confidence 35678999999997553 332 223566777777754221 344455665555
Q ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh----
Q 024981 94 LKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK---- 169 (259)
Q Consensus 94 ~kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~---- 169 (259)
.++.++||++|++ ||+ |++|.+.|..+|+++++.|||+|+|+|+++..+ |..+|+.
T Consensus 96 --------~~ril~lLGLArR--AGk---------lVsG~~~V~~alk~gk~~Lvi~A~DaS~~t~kK-l~~~~~~~~~~ 155 (220)
T PRK09190 96 --------ARRALDALGLARK--AGQ---------VVSGFEKVDAALRSGEAAALIHASDGAADGKRK-LDQARRALVHE 155 (220)
T ss_pred --------HHHHHHHHHHHhh--hCC---------EeecHHHHHHHHHcCCceEEEEeccCChhHHHH-HHHHHHhhccc
Confidence 5799999999999 999 999999999999999999999999999987654 7889999
Q ss_pred --cCCCEEEeCCcchhhhhhcCCCeEEEEEeecCc
Q 024981 170 --MEIPYCIVKGKARLGVIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 170 --~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~ 202 (259)
++|||+.++++++||.++|+..+++|+|+|.+.
T Consensus 156 ~~~~Vp~v~~~tk~eLg~AlGr~~~~~vav~d~gf 190 (220)
T PRK09190 156 TGREIPVIGLFTAAELGLAFGRENVIHAALLAGGA 190 (220)
T ss_pred ccCCccEEEecCHHHHHHHhCCCceeEEEEcChHH
Confidence 999999999999999999999999999998873
No 17
>PRK06683 hypothetical protein; Provisional
Probab=99.69 E-value=1.7e-16 Score=122.37 Aligned_cols=69 Identities=25% Similarity=0.252 Sum_probs=63.7
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEe
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLT 198 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vait 198 (259)
+++|.++|+++|++|+++|||||.|++++ +...|..+|++++|||+++.|+.+||++||++. .+++||+
T Consensus 12 ~v~G~~~v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~t~~eLG~A~G~~~~~a~~ai~ 81 (82)
T PRK06683 12 VVVGHKRTLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGII 81 (82)
T ss_pred EEEcHHHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEECCHHHHHHHhCCcccEEEEEEe
Confidence 99999999999999999999999999996 456699999999999999999999999999997 5677764
No 18
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=99.65 E-value=4.7e-16 Score=120.14 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=62.4
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCe-EEEEE
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTA-SVLCL 197 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~-a~Vai 197 (259)
+++|.++|+++|++|+++|||||.|+++ +++..|+.+|++++|||++++|+.+||++||+++. +++++
T Consensus 9 lv~G~~~vlkaIk~gkakLViiA~Da~~-~~~k~i~~~c~~~~Vpv~~~~t~~eLG~A~G~~v~aa~~~~ 77 (82)
T PRK13601 9 RVVGAKQTLKAITNCNVLQVYIAKDAEE-HVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAAAAD 77 (82)
T ss_pred EEEchHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHhCCCCEEEeCCHHHHHHHHCCccCeeeEEE
Confidence 9999999999999999999999999998 56678999999999999999999999999999984 44444
No 19
>KOG3387 consensus 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5e-13 Score=110.60 Aligned_cols=75 Identities=31% Similarity=0.516 Sum_probs=66.8
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhc---CCC-eEEEEEeecCc
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH---KKT-ASVLCLTTVKN 202 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avG---kk~-~a~Vaitd~g~ 202 (259)
.++.|.|++|+.+++|...+||+|.||.|.++..|||.||+.+|||||+|.|+..||.+|| ..+ .+++.|+..+.
T Consensus 34 ql~kg~NEaTk~Lnrgi~~~Vv~aaD~kP~eIt~HLp~LcedknVp~v~Vpsk~alG~~cg~~~~~r~~~a~~i~~~~~ 112 (131)
T KOG3387|consen 34 QLKKGANEATKTLNRGISEFVVMAADVKPLEITLHLPLLCEDKNVPYVFVPSKQALGLACGELVVLRPVIACSITTNEA 112 (131)
T ss_pred HHhcccchHhhhhccCceeEEEEEccCCHHHHHHHhHHHhhccCCceEEeeccHHhhhhhhhHhhcCcceeEEEEeccc
Confidence 3778999999999999999999999999999999999999999999999999999999999 554 45555555543
No 20
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=7.1e-12 Score=103.79 Aligned_cols=87 Identities=22% Similarity=0.338 Sum_probs=78.2
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcC----------C--CeEEEE
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHK----------K--TASVLC 196 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGk----------k--~~a~Va 196 (259)
|..|+.+.++++.+.+|+|||+|+|+|...+++.+.+||.+++||++.+.+...||.|+|. + .|+|++
T Consensus 35 larGi~Ea~KaldkrqA~lcvLaencdep~yvKLVeALcaeh~iplikV~d~k~LGew~Glckid~eGnarKvvGcs~vv 114 (134)
T KOG3406|consen 35 LARGIHEAAKALDKRQAHLCVLAENCDEPMYVKLVEALCAEHQIPLIKVGDAKELGEWAGLCKIDSEGNARKVVGCSCVV 114 (134)
T ss_pred HHhHHHHHHHHHhhCceeEEEEeccCCchHHHHHHHHHHhhcCCCeEEeccchhhhhhhceeeecCCCCeeEeecceEEE
Confidence 8899999999999999999999999999999999999999999999999999999999984 3 389999
Q ss_pred EeecCcccHHHHHHHHHHHH
Q 024981 197 LTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 197 itd~g~eDk~~l~klve~i~ 216 (259)
++|.|.|.. +++.+.+++.
T Consensus 115 Vkd~geet~-a~~~v~~~~~ 133 (134)
T KOG3406|consen 115 VKDYGEETQ-ALDIVKEHFA 133 (134)
T ss_pred EeecccccH-HHHHHHHHhh
Confidence 999996655 5777776653
No 21
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.1e-11 Score=93.35 Aligned_cols=88 Identities=26% Similarity=0.341 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE-eCCcchh
Q 024981 105 KERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI-VKGKARL 183 (259)
Q Consensus 105 ~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~-v~sK~~L 183 (259)
..+-|..|.+ .|+ ++.|.+.++++++.|+++|||||+++ |.++...|...+.--+||++. -++..+|
T Consensus 7 v~~~L~~avk--TGk---------vilG~k~tiK~lk~gkaKliiiAsN~-P~~~k~~ieyYAkLs~ipV~~y~Gt~~eL 74 (100)
T COG1911 7 VEKELKLAVK--TGK---------VILGSKRTIKSLKLGKAKLIIIASNC-PKELKEDIEYYAKLSDIPVYVYEGTSVEL 74 (100)
T ss_pred HHHHHHHHHh--cCC---------EEEehHHHHHHHHcCCCcEEEEecCC-CHHHHHHHHHHHHHcCCcEEEecCCceeH
Confidence 3444667777 898 99999999999999999999999999 668888888888888999985 5578899
Q ss_pred hhhhcCCC-eEEEEEeecCccc
Q 024981 184 GVIVHKKT-ASVLCLTTVKNED 204 (259)
Q Consensus 184 G~avGkk~-~a~Vaitd~g~eD 204 (259)
|.+||+.. .++++|+|.|++|
T Consensus 75 G~~cgkpf~v~~laIiD~G~S~ 96 (100)
T COG1911 75 GTVCGKPFRVAALAIIDEGDSD 96 (100)
T ss_pred HhhhCCCceEEEEEEecCchhh
Confidence 99999996 7899999999653
No 22
>KOG2988 consensus 60S ribosomal protein L30 [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.1e-05 Score=64.10 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhh--HHhHHHHhhhcCCCEE-EeCCcchhhh
Q 024981 109 LKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVEL--VVWLPALCRKMEIPYC-IVKGKARLGV 185 (259)
Q Consensus 109 l~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~el--v~~LpaLC~~~~VPy~-~v~sK~~LG~ 185 (259)
|.++++ +|| .+.|..++.+.++.++++|++||.+|-|... ..++--|+. .+|. +.+...+||.
T Consensus 18 lll~mk--sgk---------Y~lgyK~T~k~~r~gkakL~~is~n~p~lrks~ieyyamlak---~~v~~~sg~n~~lgt 83 (112)
T KOG2988|consen 18 LLLVMK--SGK---------YILGYKQTLKSLRQGKAKLIIISSNCPPLRKSEIEYYAMLAK---TGVHHYSGNNVELGT 83 (112)
T ss_pred HHHHHh--hcc---------eeechHHHHHHHHhccceEEEeecCCCCcchhHHHHHHHHhc---CceeeecCCcEeHHH
Confidence 456777 898 7889999999999999999999999976422 233444443 5555 4567889999
Q ss_pred hhcCCC-eEEEEEeecCcccH
Q 024981 186 IVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 186 avGkk~-~a~Vaitd~g~eDk 205 (259)
+||+-. .+|++|+|.++.|.
T Consensus 84 ~~g~~fRv~v~~ivd~gds~~ 104 (112)
T KOG2988|consen 84 ACGKTFRVSVLSIVDLGDSDI 104 (112)
T ss_pred HhcCeeEeeEEEEEeccchhh
Confidence 999875 67999999997654
No 23
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs. The structure of Pop3 has been assigned the L7Ae/L30e fold []. This RNA-binding fold is also present in human RNase P subunit Rpp38, raising the possibility that Pop3p and Rpp38 are functional homologues.
Probab=97.29 E-value=0.003 Score=54.63 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=63.5
Q ss_pred CCceEecchHHHHHHHHhcCc--cEEEEeCCCCchhhHHhHHHHhhhcC--CCEEEeC--CcchhhhhhcCCCeEEEEEe
Q 024981 125 KPIVVKYGLNHVTYLIEQNKA--QLVVIAHDVDPVELVVWLPALCRKME--IPYCIVK--GKARLGVIVHKKTASVLCLT 198 (259)
Q Consensus 125 ~p~~l~~G~n~Vtk~IekkKA--kLVVIA~DvdP~elv~~LpaLC~~~~--VPy~~v~--sK~~LG~avGkk~~a~Vait 198 (259)
.+.-+..|+|+|++.+|...+ .+||++..=+|.-+..|||.||.-.+ |..+-.. +.++|+.++|..+.++++|.
T Consensus 52 ~~~~v~~GfNsi~~~Le~~~~~~~~vFVcr~D~ps~L~~h~P~Lva~as~~vrLV~Lpkgs~~rLs~aLgi~r~g~l~v~ 131 (158)
T PF08228_consen 52 WPWGVTVGFNSIVRYLECQASDNVYVFVCRSDQPSILTSHFPQLVATASKSVRLVQLPKGSEARLSEALGIPRVGILAVR 131 (158)
T ss_pred CCccEEEehHHHHHHHhcccCCCeEEEEECCCCcHHHHHHHHHHHHhccCcceEEeCChhHHHHHHHHhCCCCccEEEEe
Confidence 345688999999999994333 25566644378889999999999888 7777543 67799999999999999998
Q ss_pred ecCcccH
Q 024981 199 TVKNEDK 205 (259)
Q Consensus 199 d~g~eDk 205 (259)
...+.++
T Consensus 132 ~~~~~~~ 138 (158)
T PF08228_consen 132 ADAPGAK 138 (158)
T ss_pred cCCcccH
Confidence 8766555
No 24
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=93.23 E-value=0.31 Score=35.49 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=48.4
Q ss_pred EecchHHHHHHHHhcC-ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEee
Q 024981 129 VKYGLNHVTYLIEQNK-AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTT 199 (259)
Q Consensus 129 l~~G~n~Vtk~IekkK-AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd 199 (259)
++.|.+.|..+++++. ..-|++..+..... ...+..+|...|||+.++. +..|.++++..+ =.++|+..
T Consensus 1 lieG~~~V~eaL~~~~~i~~l~~~~~~~~~~-~~~i~~~~~~~~i~v~~v~-~~~l~~ls~~~~hQGv~a~v~ 71 (76)
T PF08032_consen 1 LIEGRHAVEEALKSGPRIKKLFVTEEKADKR-IKEILKLAKKKGIPVYEVS-KKVLDKLSDTENHQGVVAVVK 71 (76)
T ss_dssp EEESHHHHHHHHHCTGGEEEEEEETT---CC-THHHHHHHHHCT-EEEEE--HHHHHHCTTTSS-TTEEEEEE
T ss_pred CEEEHHHHHHHHcCCCCccEEEEEcCccchh-HHHHHHHHHHcCCeEEEeC-HHHHHHHcCCCCCCeEEEEEe
Confidence 4689999999999975 88888888832222 3457889999999998875 455888887554 24555544
No 25
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=92.00 E-value=0.91 Score=36.72 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=52.5
Q ss_pred CCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEee
Q 024981 124 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 124 ~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd 199 (259)
.....++-|+-++|+.+-+.---.|++-..-+| ++ .||..||++.|||+..+.+. .-+|++|+.
T Consensus 35 ~diN~IKPGIgEaTRvLLRRvP~~vLVr~~~~p-d~-~Hl~~LA~ekgVpVe~~~d~----------~Y~a~glIk 98 (100)
T PF15608_consen 35 SDINLIKPGIGEATRVLLRRVPWKVLVRDPDDP-DL-AHLLLLAEEKGVPVEVYPDL----------PYSACGLIK 98 (100)
T ss_pred CCcccccCChhHHHHHHHhcCCCEEEECCCCCc-cH-HHHHHHHHHcCCcEEEeCCC----------CeEEEEEee
Confidence 445678899999999999999999988877666 44 78999999999999998875 257777764
No 26
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=91.82 E-value=0.26 Score=39.92 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=50.2
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCchh------------------hHHhHHHHhhhcCCCEEEeCCcchhhhhh
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPVE------------------LVVWLPALCRKMEIPYCIVKGKARLGVIV 187 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~e------------------lv~~LpaLC~~~~VPy~~v~sK~~LG~av 187 (259)
.++.|.++|.++++.|-+..++|..|..-.. ++.+|..+++++|.-+.++.+..+-|.-+
T Consensus 21 ~~~yG~~eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~iis~~~e~G~~L 98 (113)
T PF03465_consen 21 LAVYGIEEVKKALEMGAVETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAKVEIISSEHEEGEQL 98 (113)
T ss_dssp SEEESHHHHHHHHHTT-EEEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE-TTSHHHHHH
T ss_pred cEEECHHHHHHHHHhCCCcEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCEEEEEcCCCccHHHH
Confidence 3899999999999999999999999875432 36789999999999999999988887766
No 27
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=89.91 E-value=1.8 Score=42.48 Aligned_cols=70 Identities=13% Similarity=0.305 Sum_probs=54.3
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCc-----------------------------------------hhhHHhHHHHh
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDP-----------------------------------------VELVVWLPALC 167 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP-----------------------------------------~elv~~LpaLC 167 (259)
.++|.++|.++++.|.+..++|..|..- .+++.+|..+|
T Consensus 293 avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ve~L~e~a 372 (409)
T TIGR00108 293 ACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMDVVEERDLIEWLSELA 372 (409)
T ss_pred EEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCccccchhhhhHHHHHHHHH
Confidence 8899999999999999999999998721 13567788999
Q ss_pred hhcCCCEEEeCCcchhhhhhcCCCeEEEEEe
Q 024981 168 RKMEIPYCIVKGKARLGVIVHKKTASVLCLT 198 (259)
Q Consensus 168 ~~~~VPy~~v~sK~~LG~avGkk~~a~Vait 198 (259)
+.+|.-+.++.+..+=|.-+-+..-...||.
T Consensus 373 ~~~Ga~V~iiS~~~eeG~ql~~~fGGIaAiL 403 (409)
T TIGR00108 373 ENFGAKLEFISTESEEGAQLLTAFGGIGAIL 403 (409)
T ss_pred HHcCCEEEEECCCChhHHHHHHhCCCEEEEE
Confidence 9999999999999887754433322344444
No 28
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=87.75 E-value=4.9 Score=39.47 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=54.7
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCC-----------------------------------------chhhHHhHHHH
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVD-----------------------------------------PVELVVWLPAL 166 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~Dvd-----------------------------------------P~elv~~LpaL 166 (259)
..+.|.++|.++++.|.+..++|..|.. ..+++.+|..+
T Consensus 288 ~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~L~e~ 367 (403)
T TIGR03676 288 LAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELEIVEEEDIIEELSEL 367 (403)
T ss_pred cEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCcccccchhhhHHHHHHHH
Confidence 3889999999999999999999988762 12467788999
Q ss_pred hhhcCCCEEEeCCcchhhhhhcCCCeEEEEEe
Q 024981 167 CRKMEIPYCIVKGKARLGVIVHKKTASVLCLT 198 (259)
Q Consensus 167 C~~~~VPy~~v~sK~~LG~avGkk~~a~Vait 198 (259)
++.+|.-+.++.+..+-|.-+-+..-...||.
T Consensus 368 a~~~Ga~V~~iS~~~eeG~ql~~~fGGIaAiL 399 (403)
T TIGR03676 368 AEESGAKVEIISTDTEEGEQLLKAFGGIAAIL 399 (403)
T ss_pred HHHcCCEEEEECCCChhHHHHHHcCCcEEEEE
Confidence 99999999999999888855533322344443
No 29
>PRK04011 peptide chain release factor 1; Provisional
Probab=87.04 E-value=2.4 Score=41.65 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=53.9
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCC-----------------------------------------chhhHHhHHHH
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVD-----------------------------------------PVELVVWLPAL 166 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~Dvd-----------------------------------------P~elv~~LpaL 166 (259)
..++|.++|.++++.|.+..++|..|.. ..+++.+|..+
T Consensus 296 ~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~v~~l~e~ 375 (411)
T PRK04011 296 LAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEIVEEEDIIEELSEL 375 (411)
T ss_pred cEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCcccccchhhhHHHHHHHH
Confidence 4889999999999999999999986541 22467788999
Q ss_pred hhhcCCCEEEeCCcchhhhhhcCCCeEEEEEe
Q 024981 167 CRKMEIPYCIVKGKARLGVIVHKKTASVLCLT 198 (259)
Q Consensus 167 C~~~~VPy~~v~sK~~LG~avGkk~~a~Vait 198 (259)
++.+|.-+.++.+..+-|.-+-+..-...||.
T Consensus 376 a~~~g~~v~iis~~~e~G~qL~~~fGGIaAiL 407 (411)
T PRK04011 376 AEQSGTKVEVISTDTEEGEQLLKAFGGIAAIL 407 (411)
T ss_pred HHHcCCEEEEECCCChhHHHHHHcCCCEEEEE
Confidence 99999999999998888865533322334443
No 30
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=85.12 E-value=3.6 Score=39.50 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=56.0
Q ss_pred ceEecchHHHHHHHHhcCccEEEEeCCC-CchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEe
Q 024981 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDV-DPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLT 198 (259)
Q Consensus 127 ~~l~~G~n~Vtk~IekkKAkLVVIA~Dv-dP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vait 198 (259)
..+++|.++|.++++.|-+.-++|+.+. ....-+..|-..++.+|..++++.+..+-|.-+ ..--.++||+
T Consensus 276 ~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~Ss~~e~G~qL-~~lgGiaAiL 347 (351)
T TIGR00111 276 DKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQREEIEKLLDSVESMGGKVVILSTEHELGKQL-DSLGGIAGIL 347 (351)
T ss_pred CeEEECHHHHHHHHHcCCceEEEEecchhhhHHHHHHHHHHHHHcCCEEEEEcCCCccHHHH-hhCCCEEEEE
Confidence 3489999999999999999999999988 322224557888999999999999999999766 2333455554
No 31
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.79 E-value=2.1 Score=33.18 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=35.4
Q ss_pred chHHHHHHHHh--cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 132 GLNHVTYLIEQ--NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 132 G~n~Vtk~Iek--kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
|.+.-...|+. +++.+||+-.|.-.=.....+...|+++|+|++++.+
T Consensus 34 ~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 34 GDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred CCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 44444444554 5688999888875545667789999999999999874
No 32
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=81.10 E-value=3.6 Score=33.19 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=37.5
Q ss_pred cchHHHHHHHHhcCccEEEEeCCC---Cc-hhhHHhHHHHhhhcCCCEEEe
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDV---DP-VELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~Dv---dP-~elv~~LpaLC~~~~VPy~~v 177 (259)
-|..++..+|++|+..+||-..|- ++ ..-...|...|-.++|||+..
T Consensus 57 ~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 57 GGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred CchhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 577889999999999999988773 23 222445899999999999864
No 33
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=80.45 E-value=8.2 Score=38.85 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=70.9
Q ss_pred ccccccccCChhhHHHHHHHhh-----cCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccE
Q 024981 73 ALNQFTKTLDKNLASNLFKMLL-----KYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQL 147 (259)
Q Consensus 73 ~inqf~~~ld~~~a~~l~kl~~-----kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkL 147 (259)
.+||- |+......++.+++. +|-|+...+...-+--++...... .+.+.+++.. ++.|
T Consensus 303 vvnQT--Tm~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeR--------------QdA~~~L~~~-~vDl 365 (460)
T PLN02821 303 IANQT--TMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQER--------------QDAMYKLVEE-KLDL 365 (460)
T ss_pred EEECC--CCcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHH--------------HHHHHHHhhc-CCCE
Confidence 34664 566666777777664 677764222221111111111000 2334444332 3455
Q ss_pred EEEeCC-CCchhhHHhHHHHhhhcCCCEEEeCCcchhhh------------------hhcCCCeEEEEEeecCcccHHHH
Q 024981 148 VVIAHD-VDPVELVVWLPALCRKMEIPYCIVKGKARLGV------------------IVHKKTASVLCLTTVKNEDKMEF 208 (259)
Q Consensus 148 VVIA~D-vdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~------------------avGkk~~a~Vaitd~g~eDk~~l 208 (259)
+|+-.+ =|.|+ .+|-.+|+..|+|.+.+.+.++|+. |+- .....|+||.--+--....
T Consensus 366 miVVGG~NSSNT--~~L~eIa~~~g~~sy~Ie~~~eI~~~~~i~h~~~~~e~~~~~~wl~-~~~~~VGITAGASTPd~lI 442 (460)
T PLN02821 366 MLVVGGWNSSNT--SHLQEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLP-EGPVTIGVTSGASTPDKVV 442 (460)
T ss_pred EEEECCCCCccH--HHHHHHHHHhCCCEEEECCHHHcCcccccccccccchhhhhHHHhc-cCCCEEEEecCCCCCHHHH
Confidence 554444 35565 5689999999999999999999985 551 1145788886655444444
Q ss_pred HHHHHHHHHh
Q 024981 209 SRILEAIKAN 218 (259)
Q Consensus 209 ~klve~i~~n 218 (259)
+++++.+...
T Consensus 443 eeVi~~l~~~ 452 (460)
T PLN02821 443 EDVLDKVFDI 452 (460)
T ss_pred HHHHHHHHHh
Confidence 5666555443
No 34
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=79.28 E-value=3.8 Score=33.23 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=36.5
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v 177 (259)
+....+++...+++..+.-|+||-+-++.+.+..+-..|+.++|.+.++
T Consensus 126 ~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 126 VLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp EE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred eEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 5556899999999999999999988888888889999999999998775
No 35
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=78.01 E-value=4.6 Score=33.79 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=29.1
Q ss_pred HHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 139 LIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 139 ~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.+...+.+=| +|+ ++-.+++..+..+|.+.|||+.+++++.
T Consensus 20 ~~~~~~~~~v-v~~-~~i~dL~~~~~~ic~ergiPIe~I~~~k 60 (121)
T PF13611_consen 20 LVKRRKEKQV-VAN-NEIDDLVREVTEICCERGIPIEIIDKKK 60 (121)
T ss_pred hhhhhhhcce-Eec-CcHHHHHHHHHHHHHHcCCCEEEecCcc
Confidence 3434444444 675 4344788889999999999999998644
No 36
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=74.09 E-value=8.4 Score=31.81 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHHHHHHHcCC-C-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCE
Q 024981 97 RPEDRAAKKERLLKKAQAEAEGK-T-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPY 174 (259)
Q Consensus 97 rPE~k~eK~~rLl~~A~k~aaGk-~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy 174 (259)
.|+.+-+-..+.||-=+.+--.. . .....+. -..++.+.+.+...-.|+|..+++.. ....+..+|.++|+||
T Consensus 17 ~p~lkPDEqr~yLGtfrERV~lalt~~q~~~~~----~~~~~~~~l~~~~~~~l~ing~l~~~-~~~~YiklA~~~~~~f 91 (120)
T PF07997_consen 17 TPELKPDEQRRYLGTFRERVILALTKEQVEEPD----IYPEFEQALKDYPNYKLKINGNLDYS-FQSKYIKLANKHGIPF 91 (120)
T ss_dssp --SSHHHHHHHTTT--GGGEEEEEEHHHHTSSS------HHHHHHHHC-SSEEEEEETTS-HH-HHHHHHHHHHHTT--E
T ss_pred CCCCCHHHHHHhcchHHhHhhheecHHHHhChh----HHHHHHHHHhhCCCeEEEEcCCCCHH-HHHHHHHHHHHcCCCE
Confidence 67777766667776432210000 0 0011111 14788899999999999999999885 5677899999999999
Q ss_pred EEeCCcch
Q 024981 175 CIVKGKAR 182 (259)
Q Consensus 175 ~~v~sK~~ 182 (259)
.+|.+...
T Consensus 92 Tiv~~~~~ 99 (120)
T PF07997_consen 92 TIVNDPEY 99 (120)
T ss_dssp EEE---SS
T ss_pred EEeCCCCc
Confidence 99998664
No 37
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=73.51 E-value=4.9 Score=30.92 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=31.9
Q ss_pred HHHHHHHhcCccEEEEeCCCCchhh---HHhHHHHhhhcCCCEE
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPVEL---VVWLPALCRKMEIPYC 175 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~el---v~~LpaLC~~~~VPy~ 175 (259)
++..+|+++++.|||.-.+-..... -..+..+|.+++||+.
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 4999999999999999888654322 3458999999999996
No 38
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=73.46 E-value=7.1 Score=32.91 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=35.2
Q ss_pred chHHHHHHHHhcCccEEEEeCC-CCc---hhhHHhHHHHhhhcCCCEEE
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHD-VDP---VELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~D-vdP---~elv~~LpaLC~~~~VPy~~ 176 (259)
|..++...|.+|++.+||--.| .++ ..-...|...|-.++|||+.
T Consensus 63 g~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T 111 (142)
T PRK05234 63 GDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVAT 111 (142)
T ss_pred CchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEc
Confidence 6788999999999999998774 222 22233589999999999965
No 39
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=72.21 E-value=7.5 Score=30.84 Aligned_cols=46 Identities=26% Similarity=0.181 Sum_probs=35.3
Q ss_pred chHHHHHHHHh-cCccEEEEeCCCC----chhhHHhHHHHhhhcCCCEEEe
Q 024981 132 GLNHVTYLIEQ-NKAQLVVIAHDVD----PVELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 132 G~n~Vtk~Iek-kKAkLVVIA~Dvd----P~elv~~LpaLC~~~~VPy~~v 177 (259)
|..++...|++ +++.|||--.|-. ...-...|...|-+++|||+.-
T Consensus 55 g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 67889999999 9999999876521 1122345889999999999863
No 40
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=71.76 E-value=5.5 Score=30.18 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=34.8
Q ss_pred cchHHHHHHHHhcCccEEEEeCCC---CchhhHHhHHHHhhhcCCCEE
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDV---DPVELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~Dv---dP~elv~~LpaLC~~~~VPy~ 175 (259)
.|..++.+.|+.+++.+||...+- ++.+-...+..+|.+++|||.
T Consensus 42 ~~~~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 42 GGILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CCCHHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 466679999999999999987652 223323468999999999985
No 41
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=71.49 E-value=16 Score=33.16 Aligned_cols=78 Identities=26% Similarity=0.305 Sum_probs=48.9
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhh----hcCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVI----VHKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~a----vGkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.+.|||+|.| |+ ++-..+-..|+.+++++..+.+. ++|.. +-.....+|||...|.+-. .-..|-+.|...+
T Consensus 85 g~~LViaATd-D~-~vN~~I~~~a~~~~~lvn~vd~p-~~~dFi~PAiv~rg~l~IaIST~G~sP~-lar~lR~~ie~~l 160 (223)
T PRK05562 85 DKHLIVIATD-DE-KLNNKIRKHCDRLYKLYIDCSDY-KKGLCIIPYQRSTKNFVFALNTKGGSPK-TSVFIGEKVKNFL 160 (223)
T ss_pred CCcEEEECCC-CH-HHHHHHHHHHHHcCCeEEEcCCc-ccCeEEeeeEEecCCEEEEEECCCcCcH-HHHHHHHHHHHHH
Confidence 4789999987 34 56677899999999999887764 44532 2223346788877775332 2233334555544
Q ss_pred hhhhhhh
Q 024981 220 NDKYDEH 226 (259)
Q Consensus 220 nd~y~e~ 226 (259)
+.|+++
T Consensus 161 -~~~~~l 166 (223)
T PRK05562 161 -KKYDDF 166 (223)
T ss_pred -HHHHHH
Confidence 445543
No 42
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=68.62 E-value=29 Score=31.44 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=50.5
Q ss_pred EecchHHHHHHHHhc--CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeec
Q 024981 129 VKYGLNHVTYLIEQN--KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTV 200 (259)
Q Consensus 129 l~~G~n~Vtk~Iekk--KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~ 200 (259)
++.|.+.|..+++.+ ...-|++..+.+...+ ..+..+|...+|++..+ +.+.|-++++..+ -.++|+...
T Consensus 4 ~i~G~~~v~eal~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~v-~~~~l~~ls~~~~~qGv~a~~~~ 76 (244)
T PRK11181 4 IIYGIHAVQALLERAPERFIEVFVLKGREDKRL-LPLINELEAQGIVIQLA-NRQTLDEKAEGAVHQGIIARVKP 76 (244)
T ss_pred EEEehHHHHHHHhCCCCceeEEEEECCCcchHH-HHHHHHHHHcCCcEEEe-CHHHHhhhhcCCCCceEEEEEec
Confidence 569999999999863 4666777777644333 44667888899998776 5677888887654 356666654
No 43
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=64.66 E-value=23 Score=31.29 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=50.2
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhh----cCCCeEEEEEeecCcccHHHHHHHHHHHHHh
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIV----HKKTASVLCLTTVKNEDKMEFSRILEAIKAN 218 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~av----Gkk~~a~Vaitd~g~eDk~~l~klve~i~~n 218 (259)
..+.|||+|.|.. ++-..+-..|+..+||+..+.+. ++|..+ .+.....|+|...|..-. .-..|-+.|...
T Consensus 68 ~~~~lVi~at~d~--~ln~~i~~~a~~~~ilvn~~d~~-e~~~f~~pa~~~~g~l~iaisT~G~sP~-la~~lr~~ie~~ 143 (205)
T TIGR01470 68 EGAFLVIAATDDE--ELNRRVAHAARARGVPVNVVDDP-ELCSFIFPSIVDRSPVVVAISSGGAAPV-LARLLRERIETL 143 (205)
T ss_pred CCcEEEEECCCCH--HHHHHHHHHHHHcCCEEEECCCc-ccCeEEEeeEEEcCCEEEEEECCCCCcH-HHHHHHHHHHHh
Confidence 3588999998874 34456789999999999765543 344322 222346788877765433 224444566666
Q ss_pred hhhhhhhhh
Q 024981 219 FNDKYDEHR 227 (259)
Q Consensus 219 ynd~y~e~~ 227 (259)
|.+.|+++.
T Consensus 144 l~~~~~~~~ 152 (205)
T TIGR01470 144 LPPSLGDLA 152 (205)
T ss_pred cchhHHHHH
Confidence 655555543
No 44
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=63.95 E-value=35 Score=28.73 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
.++..++..-.+-++||..+-.+......+..+|..+++|++++-+|-++
T Consensus 85 ~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 85 KEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTS
T ss_pred ecccceecccccceeeeecccccccccccccccccccccceEEeeeeccc
Confidence 34555655555666666665445454555778899999998887777664
No 45
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=63.26 E-value=18 Score=30.97 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh
Q 024981 138 YLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV 185 (259)
Q Consensus 138 k~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~ 185 (259)
+.+...+..+||.--|++..+--..|...-.+.|+|++.+-++.++-.
T Consensus 72 ~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 72 DYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp HHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred HHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 345577888999999998876655566666789999999988765443
No 46
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=62.53 E-value=29 Score=35.97 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=51.3
Q ss_pred CccEEEE-eCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhh
Q 024981 144 KAQLVVI-AHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFN 220 (259)
Q Consensus 144 KAkLVVI-A~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nyn 220 (259)
++.++|+ ..-=|.|+ .+|-.+|+..|.|.+.+.+.++|-.-.= +...+|+||---+-.....+++++.++..++
T Consensus 206 ~~d~~~vvGg~~SsNt--~~L~~i~~~~~~~~~~ie~~~el~~~~~-~~~~~vgitagaStP~~~i~~v~~~l~~~~~ 280 (647)
T PRK00087 206 KVDVMIVVGGKNSSNT--TKLYEICKSNCTNTIHIENAGELPEEWF-KGVKIIGVTAGASTPDWIIEEVIKKMSELDN 280 (647)
T ss_pred hCCEEEEECCCCCccH--HHHHHHHHHHCCCEEEECChHHCCHHHh-CCCCEEEEEeccCCCHHHHHHHHHHHHHhcc
Confidence 3444444 44446666 4588999999999999999999975221 1235688887766555566788888776554
No 47
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=62.11 E-value=58 Score=29.19 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=41.7
Q ss_pred ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc----hhhhhhcCCCeEEEEEeecCccc
Q 024981 145 AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA----RLGVIVHKKTASVLCLTTVKNED 204 (259)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~----~LG~avGkk~~a~Vaitd~g~eD 204 (259)
+-|||+|.|= .++-..+-..|++++||+..+...+ -++..+++.. ..|+|...|.+-
T Consensus 73 ~~lviaAt~d--~~ln~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~-l~iaIsT~G~sP 133 (210)
T COG1648 73 AFLVIAATDD--EELNERIAKAARERRILVNVVDDPELCDFIFPAIVDRGP-LQIAISTGGKSP 133 (210)
T ss_pred ceEEEEeCCC--HHHHHHHHHHHHHhCCceeccCCcccCceecceeeccCC-eEEEEECCCCCh
Confidence 8999999884 3566778899999999997766544 2444555554 678888887543
No 48
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=59.86 E-value=19 Score=27.01 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=13.5
Q ss_pred HhHHHHhhhcCCCEEEeC
Q 024981 161 VWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 161 ~~LpaLC~~~~VPy~~v~ 178 (259)
.|.--+|+++|||+++--
T Consensus 43 SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 43 SHAAILARELGIPAIVGV 60 (80)
T ss_dssp SHHHHHHHHTT-EEEEST
T ss_pred chHHHHHHHcCCCEEEee
Confidence 577789999999997743
No 49
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=59.39 E-value=53 Score=29.58 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=47.5
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCC-CchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeecC
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDV-DPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTVK 201 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~Dv-dP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~g 201 (259)
++.|.+.|..+++++ -++.+. ... ++ +. ..+-.+|.+.+||+..+ +++.|-++++..+ -.++|+.+..
T Consensus 3 ~i~G~~~v~eal~~~-~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~v-~~~~l~~l~~~~~~qGv~a~~~~~ 72 (237)
T TIGR00186 3 YLYGKNAVLEALLNQ-QRVFIL-KGLESK-RL-KKLIQLAKKQGINIQLV-DRQKLDQLTKGGNHQGIAAKVKPI 72 (237)
T ss_pred EEEehHHHHHHHhCC-CEEEEE-ecCcch-HH-HHHHHHHHHcCCcEEEe-CHHHHHHHhCCCCCCeEEEEEecC
Confidence 569999999999988 334332 222 22 22 34677888899999888 5778888888654 4667776643
No 50
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=57.92 E-value=7.9 Score=37.09 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=62.4
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHH
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSR 210 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~k 210 (259)
.|++-+...+..+. +.+.+-.+++.|+--+|+-.|+-.+-++|--.=+.. . -.+-||.+.|..
T Consensus 218 Igv~~~~~fl~~~~------~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~------~-----p~gled~~~l~~ 280 (313)
T COG2355 218 IGVNFIPAFLRPGG------AARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTG------P-----PDGLEDVGKLPN 280 (313)
T ss_pred EEEEeehhhccCCC------CCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCC------C-----chhhcChhHHHH
Confidence 35555555555422 567777899999999999999988766653321110 0 135688889999
Q ss_pred HHHHHHHh-hhhhhhhhhhccCCCCCC
Q 024981 211 ILEAIKAN-FNDKYDEHRKKWGGGIMG 236 (259)
Q Consensus 211 lve~i~~n-ynd~y~e~~~~wgg~~lg 236 (259)
|++++.+. |.| +++..-||+|.+-
T Consensus 281 l~~~L~~~G~~e--~~i~~i~~~N~lR 305 (313)
T COG2355 281 LTAALIERGYSE--EEIEKIAGENWLR 305 (313)
T ss_pred HHHHHHHcCCCH--HHHHHHHHHhHHH
Confidence 99999988 988 6899999998763
No 51
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.48 E-value=15 Score=30.82 Aligned_cols=85 Identities=26% Similarity=0.297 Sum_probs=52.9
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcCC-----CEEEeCCcc--hhhhhhc--CCCeEEEEEeecCcccHHHHHHHHHH---
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKMEI-----PYCIVKGKA--RLGVIVH--KKTASVLCLTTVKNEDKMEFSRILEA--- 214 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~V-----Py~~v~sK~--~LG~avG--kk~~a~Vaitd~g~eDk~~l~klve~--- 214 (259)
+|+|-.|-..- +..-|-+|-+.-|+ |=|+...-+ -|.+.+| ++.|.+.|+.+++..+..+...|-+.
T Consensus 3 ~vliR~Ds~~K-il~ALaDleRyagiki~gkPrii~p~~aD~~~~~ilGe~R~k~~~aa~a~v~~~a~~aI~rIr~IHPP 81 (125)
T COG1844 3 IVLIRADSYDK-ILTALADLERYAGIKIRGKPRIIPPELADEILSSILGEVRKKCKVAAVAEVEEPASKAIGRIRKIHPP 81 (125)
T ss_pred EEEEecCcHHH-HHHHHHHHHHhcCceeecCCcccChhhHHHHHHHHHHHHhcccchhheeeecCccHHHHHHHHhcCCC
Confidence 67788886552 33346666666555 444544322 2344444 55677778888877666555554331
Q ss_pred -----HHHhhhhhhhhhhhccCCC
Q 024981 215 -----IKANFNDKYDEHRKKWGGG 233 (259)
Q Consensus 215 -----i~~nynd~y~e~~~~wgg~ 233 (259)
|...| |-|.|+.+.||+-
T Consensus 82 AHiIVIs~r~-dvy~el~~~fgkl 104 (125)
T COG1844 82 AHIIVISPRH-DVYKELLRLFGKL 104 (125)
T ss_pred ceEEEeCCCc-hHHHHHHHHhccc
Confidence 33567 8999999999973
No 52
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=57.06 E-value=84 Score=25.73 Aligned_cols=71 Identities=7% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
..+....+.|..++|+-+.|.+ ++.. |-..|+..|+|++.+.+--+-- +--.+.||+|| |+.+...++++.
T Consensus 39 ~~~~~W~~~G~~KVvlk~~~~~--el~~-l~~~a~~~~l~~~~v~DAG~Te--i~pgs~Tvlai---gP~~~~~id~it 109 (115)
T TIGR00283 39 SLRRKWLDEGQKKVVLKVNSLE--ELLE-IYHKAESLGLVTGLIRDAGHTQ--IPPGTITAVGI---GPDEDEKIDKIT 109 (115)
T ss_pred HHHHHHHHcCCCEEEEEeCCHH--HHHH-HHHHHHHcCCCEEEEEcCCcce--eCCCCcEEEEE---CCCCHHHHHHHh
Confidence 3345666788888998888743 4533 7788999999999886532100 11124577875 444554455543
No 53
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=56.34 E-value=25 Score=27.42 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=35.0
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCC-chhhHHhHHHHhhhcCCCEEE
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVD-PVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~Dvd-P~elv~~LpaLC~~~~VPy~~ 176 (259)
.|..++...|++++..+||-..+-. +..---.+..+|-++||||+.
T Consensus 54 ~~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 54 EGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CCchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 4678899999999999998865521 111234589999999999974
No 54
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=56.30 E-value=47 Score=31.55 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=48.5
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHh
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKAN 218 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~n 218 (259)
+|||..-=|.|+. +|-.+|+..+.|.+.+.+.++|-...= +....|+||---+-.....+++++.++..
T Consensus 214 miVVGg~~SsNT~--kL~~i~~~~~~~t~~Ie~~~el~~~~l-~~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 214 VIVVGSKNSSNSN--RLREVAEEAGAPAYLIDDASEIDPEWF-KGVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred EEEECCCCCccHH--HHHHHHHHHCCCEEEECChHHCcHHHh-cCCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 4445555577764 578999999999999999999974222 22467888876665555567777777654
No 55
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=55.75 E-value=1.7e+02 Score=27.60 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=76.4
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCCCC----CCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhH
Q 024981 88 NLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVE----SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWL 163 (259)
Q Consensus 88 ~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~~~----~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~L 163 (259)
.+--|-+.+.++ +...++...+. .+.++| +=--++...|+..-.+....--+.=| |-.|+ |.|....+
T Consensus 68 ~~rAL~~g~t~~----~~lel~~~~r~--~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGl-ivpDL-P~ee~~~~ 139 (265)
T COG0159 68 HLRALAAGVTLE----DTLELVEEIRA--KGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGL-LVPDL-PPEESDEL 139 (265)
T ss_pred HHHHHHCCCCHH----HHHHHHHHHHh--cCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEE-EeCCC-ChHHHHHH
Confidence 344555566655 56777776664 343222 11112345677774545544444333 45688 44666778
Q ss_pred HHHhhhcCCCEEEeC----CcchhhhhhcCCC-----eEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 164 PALCRKMEIPYCIVK----GKARLGVIVHKKT-----ASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 164 paLC~~~~VPy~~v~----sK~~LG~avGkk~-----~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
...|+++||-+++.- +.++|-+.+.... .+..++|.....+...+..+++.+|.
T Consensus 140 ~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~ 202 (265)
T COG0159 140 LKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRK 202 (265)
T ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHH
Confidence 999999999888632 3467877776652 45558888887766668899999885
No 56
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=55.43 E-value=77 Score=31.38 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=53.6
Q ss_pred CccEEEE-eCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh------------------hhcCCCeEEEEEeecCccc
Q 024981 144 KAQLVVI-AHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV------------------IVHKKTASVLCLTTVKNED 204 (259)
Q Consensus 144 KAkLVVI-A~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~------------------avGkk~~a~Vaitd~g~eD 204 (259)
++.++|+ ..-=|.|+ .+|-.+|+..+.|...+.+.++|-. |+-. ...+|+||---|--
T Consensus 288 ~vD~miVVGG~nSSNT--~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t~~wl~~-~~~~VGITAGASTP 364 (387)
T PRK13371 288 PLDLMVVIGGYNSSNT--THLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVTENWLPE-GPVTVGITSGASTP 364 (387)
T ss_pred CCCEEEEECCCCCccH--HHHHHHHHhcCCCEEEECCHHHcCCccccccccccchhhhhhhhhcc-CCCEEEEecCCCCC
Confidence 3444444 44446665 4588999999999999999999965 3321 24578998766655
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 024981 205 KMEFSRILEAIKANFNDKY 223 (259)
Q Consensus 205 k~~l~klve~i~~nynd~y 223 (259)
....+++++.++..|-|.-
T Consensus 365 ~~lI~eVi~~l~~l~~~~~ 383 (387)
T PRK13371 365 DKVVEDVIEKIFALKEDAR 383 (387)
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 5566888888888776543
No 57
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=54.58 E-value=44 Score=33.29 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=60.2
Q ss_pred HhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeecC--cccHHHHHHHHHHHHH
Q 024981 141 EQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTVK--NEDKMEFSRILEAIKA 217 (259)
Q Consensus 141 ekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~g--~eDk~~l~klve~i~~ 217 (259)
..++-++-||.-|.--+--+..|..+|+-||||++.+.+..+|-.++.-=. |=.|-|-..| .-|...+++|.+.+..
T Consensus 230 ~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 230 LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 567888999999998887788899999999999999999999998887543 4333333233 3567777888777764
Q ss_pred h
Q 024981 218 N 218 (259)
Q Consensus 218 n 218 (259)
.
T Consensus 310 ~ 310 (407)
T COG1419 310 S 310 (407)
T ss_pred c
Confidence 4
No 58
>PRK10864 putative methyltransferase; Provisional
Probab=53.65 E-value=66 Score=31.23 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=48.9
Q ss_pred eEecchHHHHHHHHhc--CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeec
Q 024981 128 VVKYGLNHVTYLIEQN--KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTV 200 (259)
Q Consensus 128 ~l~~G~n~Vtk~Iekk--KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~ 200 (259)
.++.|.+.|..+++++ .+.-+++....++ .. ..+..++...+++|..+ +.+.|-++++..+ -.++|++..
T Consensus 109 ~~I~G~~aV~ealk~~~~~i~~l~~~~~~~~-~~-~~il~~~~~~~~~v~~V-~~~~l~kls~~~~hqGV~A~v~~ 181 (346)
T PRK10864 109 TRVYGENACQALFQSRPEAIVRAWFIQSVTP-RF-KEALRWMAANRKAYHVV-DEAELTKASGTEHHGGVCFLIKK 181 (346)
T ss_pred cEEEEHHHHHHHHhCCCCceeEEEEecCccH-HH-HHHHHHHHHcCCcEEEe-CHHHHHHHhCCCCCCeEEEEEeC
Confidence 4789999999999873 3556667777765 22 33556677788998766 6677888888764 345555543
No 59
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=53.32 E-value=33 Score=33.30 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=45.8
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+..+.++....+++..+.-|+||.+-...+....+-..|+.++|++..+.+-.++
T Consensus 173 Vlg~~~~l~~~i~~~~id~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP~~~e~ 227 (445)
T TIGR03025 173 VLGKLDDLVELVRAHRVDEVIIALPLSEEARILELLLQLRDLGVDVRLVPDLFEF 227 (445)
T ss_pred ccCCHHHHHHHHHhCCCCEEEEecCcccHHHHHHHHHHHHhcCCEEEEeCchhhh
Confidence 3445678899999999999999987766666677889999999999999887765
No 60
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=53.25 E-value=39 Score=29.79 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCccEEEEeCCCCc--hhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDP--VELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP--~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
..+...+.+.++.+||++.|+.. .....++..+.+..++|++++.+.-+
T Consensus 22 ~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD 72 (239)
T TIGR03729 22 ETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHD 72 (239)
T ss_pred HHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCC
Confidence 44666676778999999999864 22334455666556789988776555
No 61
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=52.74 E-value=41 Score=31.63 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=25.7
Q ss_pred ccCChhhHHHHHHHhhcCCccc------HHHHHHHHHHHHHH
Q 024981 79 KTLDKNLASNLFKMLLKYRPED------RAAKKERLLKKAQA 114 (259)
Q Consensus 79 ~~ld~~~a~~l~kl~~kyrPE~------k~eK~~rLl~~A~k 114 (259)
..+..+-...+.+|.+||.|=. ..||..-+...-.+
T Consensus 55 ~~~~~~~~~~~~~l~~~Y~PiE~d~~~~~~eK~~~m~eWw~k 96 (277)
T TIGR01544 55 KLLTDECRKKLLQLKEKYYPIEVDPVLTVEEKYPYMVEWWTK 96 (277)
T ss_pred CCCCHHHHHHHHHHHhhccceecCCCCChHHhhhHHHHHHHH
Confidence 4466677889999999999953 45776666655544
No 62
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=52.66 E-value=4.4 Score=41.95 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=3.6
Q ss_pred ccccccCcceehh
Q 024981 45 LTRFVRWPTQVNI 57 (259)
Q Consensus 45 l~~fvkwp~yi~l 57 (259)
...|+|||-||||
T Consensus 540 ~e~YiKWPWyVWL 552 (610)
T PF01601_consen 540 YETYIKWPWYVWL 552 (610)
T ss_dssp CCCHH--------
T ss_pred eeEEeehHHHHHH
Confidence 4579999999997
No 63
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=52.62 E-value=32 Score=33.45 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
+..+.++..+.+++..+.-|+||.+....+....+-..|+.++|++.++.+-.++.
T Consensus 176 Vlg~~~dl~~~i~~~~vd~ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP~~~e~~ 231 (451)
T TIGR03023 176 VLGKLDDLEELIREGEVDEVYIALPLAAEDRILELLDALEDLTVDVRLVPDLFDFA 231 (451)
T ss_pred ccCCHHHHHHHHHhcCCCEEEEeeCcccHHHHHHHHHHHHhcCCEEEEeCchhhhc
Confidence 44557889999999999999999877665556778899999999999998866554
No 64
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=52.49 E-value=70 Score=30.10 Aligned_cols=69 Identities=9% Similarity=0.130 Sum_probs=41.8
Q ss_pred CccEE-EEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh-hhcCCCeEEEEEeecCcccHHHHHHHHHHHH
Q 024981 144 KAQLV-VIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV-IVHKKTASVLCLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 144 KAkLV-VIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~-avGkk~~a~Vaitd~g~eDk~~l~klve~i~ 216 (259)
.+.++ ||..-=|.|+ .+|-.+|++++.|.+.+.+.++|=. ++.. +..|+||---|-.....+++++.++
T Consensus 209 ~vD~miVIGg~~SsNT--~kL~eia~~~~~~t~~Ie~~~el~~~~l~~--~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 209 EVDAMIVIGGKNSSNT--RKLAEIAKEHGKPTYHIETADELDPEWLKG--VKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp CSSEEEEES-TT-HHH--HHHHHHHHHCTTCEEEESSGGG--HHHHTT---SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred hCCEEEEecCCCCccH--HHHHHHHHHhCCCEEEeCCccccCHhHhCC--CCEEEEEccCCCCHHHHHHHHHHHh
Confidence 34444 4455556665 4588999999999999999999953 3322 3478888776544444456655554
No 65
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.15 E-value=64 Score=28.36 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=47.8
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhh----cCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIV----HKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~av----Gkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.+.+||.|.|-+. +-..+-..| ..+++|..+.+ .++|..+ ......+|||+..|.+-. .-..|-+.|.+.|
T Consensus 70 ~adlViaaT~d~e--lN~~i~~~a-~~~~lvn~~d~-~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~-la~~lr~~ie~~~ 144 (202)
T PRK06718 70 DAFLVIAATNDPR--VNEQVKEDL-PENALFNVITD-AESGNVVFPSALHRGKLTISVSTDGASPK-LAKKIRDELEALY 144 (202)
T ss_pred CceEEEEcCCCHH--HHHHHHHHH-HhCCcEEECCC-CccCeEEEeeEEEcCCeEEEEECCCCChH-HHHHHHHHHHHHc
Confidence 5778888877644 445577889 55788766554 4455422 233357788887775333 2244446666666
Q ss_pred hhhhhhhh
Q 024981 220 NDKYDEHR 227 (259)
Q Consensus 220 nd~y~e~~ 227 (259)
-+.|+++.
T Consensus 145 ~~~~~~~~ 152 (202)
T PRK06718 145 DESYESYI 152 (202)
T ss_pred chhHHHHH
Confidence 66666544
No 66
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.63 E-value=67 Score=29.64 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=55.5
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE-eC-C--cchhhhhhcCCC--e---EEEEEeec
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI-VK-G--KARLGVIVHKKT--A---SVLCLTTV 200 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~-v~-s--K~~LG~avGkk~--~---a~Vaitd~ 200 (259)
..|++...+...+--+.=|+| .|..+.+. ..+...|+++|+.++. +. + .+++-....... . +..++|..
T Consensus 103 ~~G~e~f~~~~~~aGvdGvii-pDLp~ee~-~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~ 180 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLII-PDLPPEEA-EELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA 180 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEE-CCCCHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCc
Confidence 347776666666655655555 69976555 4578899999988875 32 2 356666555543 1 33345655
Q ss_pred CcccHHHHHHHHHHHHHh
Q 024981 201 KNEDKMEFSRILEAIKAN 218 (259)
Q Consensus 201 g~eDk~~l~klve~i~~n 218 (259)
..+....+.++++.++..
T Consensus 181 ~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 181 RSADAADLAELVARLKAH 198 (258)
T ss_pred ccCCCccHHHHHHHHHhc
Confidence 445555678888888873
No 67
>PRK10637 cysG siroheme synthase; Provisional
Probab=51.40 E-value=44 Score=33.00 Aligned_cols=79 Identities=8% Similarity=0.058 Sum_probs=49.8
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh----hhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV----IVHKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~----avGkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.+.|||+|.|- .++-..+-..|+..+|++..+.+. +++. ++.+...-+|||...|.+-. .-..|-+.|.+.|
T Consensus 72 ~~~lv~~at~d--~~~n~~i~~~a~~~~~lvN~~d~~-~~~~f~~pa~~~~g~l~iaisT~G~sP~-~a~~lr~~ie~~~ 147 (457)
T PRK10637 72 TCWLAIAATDD--DAVNQRVSEAAEARRIFCNVVDAP-KAASFIMPSIIDRSPLMVAVSSGGTSPV-LARLLREKLESLL 147 (457)
T ss_pred CCEEEEECCCC--HHHhHHHHHHHHHcCcEEEECCCc-ccCeEEEeeEEecCCEEEEEECCCCCcH-HHHHHHHHHHHhc
Confidence 47899898763 256677899999999998665554 4443 22233346788887775433 2244446666666
Q ss_pred hhhhhhh
Q 024981 220 NDKYDEH 226 (259)
Q Consensus 220 nd~y~e~ 226 (259)
.+.|+++
T Consensus 148 ~~~~~~~ 154 (457)
T PRK10637 148 PQHLGQV 154 (457)
T ss_pred chhHHHH
Confidence 5555543
No 68
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=48.01 E-value=2.3e+02 Score=26.43 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHh-------cCccEEEEeCC---CCchhhHHhHHHHhhhc-CCC
Q 024981 105 KERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQ-------NKAQLVVIAHD---VDPVELVVWLPALCRKM-EIP 173 (259)
Q Consensus 105 ~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~Iek-------kKAkLVVIA~D---vdP~elv~~LpaLC~~~-~VP 173 (259)
+.+++..+.+.++|+ -|.++-.|.+.+..+++. |-..++|++.- .++.+++.|+.++|+.- ++|
T Consensus 63 r~~v~~~~~~~~~gr-----vpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lP 137 (309)
T cd00952 63 KQAFVATVVETVAGR-----VPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMA 137 (309)
T ss_pred HHHHHHHHHHHhCCC-----CCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 355666566555554 344444443344444432 43445666543 35579999999999998 699
Q ss_pred EEEeCCcc---------hhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHH
Q 024981 174 YCIVKGKA---------RLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 174 y~~v~sK~---------~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~ 216 (259)
++++.--. -|.+++ +...+++|-|.+ |-..+..+++..+
T Consensus 138 v~iYn~P~~tg~~l~~~~l~~L~--~~pnivgiKdss--d~~~~~~~i~~~~ 185 (309)
T cd00952 138 IAIYANPEAFKFDFPRAAWAELA--QIPQVVAAKYLG--DIGALLSDLAAVK 185 (309)
T ss_pred EEEEcCchhcCCCCCHHHHHHHh--cCCCEEEEEecC--ChHHHHHHHHHcC
Confidence 98764322 244444 234678887764 6666666665544
No 69
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=47.81 E-value=31 Score=28.20 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=21.2
Q ss_pred hcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 142 QNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 142 kkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
+.+.-.+|++.|..|.+ .+..+|++++||+....
T Consensus 79 ~~~~P~iIvt~~~~~p~---~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 79 SYNPPCIIVTRGLEPPP---ELIELAEKYNIPLLRTP 112 (127)
T ss_dssp TTT-S-EEEETTT---H---HHHHHHHHCT--EEEES
T ss_pred CCCCCEEEEECcCCCCH---HHHHHHHHhCCcEEEcC
Confidence 34556789999997654 36789999999998755
No 70
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=47.69 E-value=38 Score=32.26 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=32.7
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCc------h---hhHHhHHHHhhhcCCCEEEeCCc
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDP------V---ELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP------~---elv~~LpaLC~~~~VPy~~v~sK 180 (259)
..++++.++..++.+||||+|+-. . .....|..||. -+||++.+.+.
T Consensus 29 f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~-~~Ipv~~I~GN 84 (390)
T COG0420 29 FDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKD-AGIPVVVIAGN 84 (390)
T ss_pred HHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhcc-CCCcEEEecCC
Confidence 567777888888999999999832 2 23344555554 67999876643
No 71
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=47.13 E-value=92 Score=29.36 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=44.6
Q ss_pred ccEEEE-eCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHH
Q 024981 145 AQLVVI-AHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAI 215 (259)
Q Consensus 145 AkLVVI-A~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i 215 (259)
+.++|+ ..-=|.|+ .+|-.+|+..|.|.+.+.+.++|....=.. ...|+||---|-.....+++++.+
T Consensus 209 vD~miVVGg~nSsNT--~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~-~~~VGiTAGASTP~~li~eVi~~l 277 (280)
T TIGR00216 209 VDLMIVIGGKNSSNT--TRLYEIAEEHGPPSYLIETAEELPEEWLKG-VKVVGITAGASTPDWIIEEVIRKI 277 (280)
T ss_pred CCEEEEECCCCCchH--HHHHHHHHHhCCCEEEECChHHCCHHHhCC-CCEEEEEecCCCCHHHHHHHHHHH
Confidence 444444 44446665 458899999999999999999997432222 345888866654444445555544
No 72
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=46.70 E-value=1.1e+02 Score=25.03 Aligned_cols=89 Identities=9% Similarity=0.062 Sum_probs=52.7
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHH
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKME 207 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~ 207 (259)
+......++..+|.+|++..++.... . +..+...++.....+. +.... .....+++... +...
T Consensus 136 ~~~~~~~~~~~~l~~g~~d~~i~~~~----~----~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~---~~~l 198 (225)
T PF00497_consen 136 VEVDSPEEALEALLSGRIDAFIVDES----T----AEYLLKRHPLENIVVI-----PPPIS-PSPVYFAVRKK---NPEL 198 (225)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHH----H----HHHHHHHTTTCEEEEE-----EEEEE-EEEEEEEEETT---THHH
T ss_pred cccccHHHHHHHHhcCCeeeeeccch----h----hhhhhhhccccccccc-----ccccc-cceeEEeeccc---ccHH
Confidence 34578899999999999998876442 1 2344555555554432 11111 11233444333 3334
Q ss_pred HHHHHHHHHHhhhh-hhhhhhhccCCC
Q 024981 208 FSRILEAIKANFND-KYDEHRKKWGGG 233 (259)
Q Consensus 208 l~klve~i~~nynd-~y~e~~~~wgg~ 233 (259)
++.+=+++...-.+ .|++|..+|+|.
T Consensus 199 ~~~~n~~i~~l~~~G~~~~i~~ky~g~ 225 (225)
T PF00497_consen 199 LEIFNKAIRELKQSGEIQKILKKYLGD 225 (225)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHcCC
Confidence 45555556665555 788999999984
No 73
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=46.37 E-value=1.5e+02 Score=27.17 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=50.8
Q ss_pred eEecchHHHHHHHHhc-CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeecC
Q 024981 128 VVKYGLNHVTYLIEQN-KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTVK 201 (259)
Q Consensus 128 ~l~~G~n~Vtk~Iekk-KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~g 201 (259)
+++.|.+.|..+++++ .+.-+++..+..+ . ...+.......++|+..+.. ..|-...+..+ -.++++.+..
T Consensus 22 ~~~~G~~~v~~al~~~~~i~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~-~~l~~~~~~~~hqGi~a~~~~~ 94 (260)
T COG0566 22 FLIEGEHAVLEALASGPKIVRILVTEGRLP-R-FEELLALAAAKGIPVYVVSE-AILDKLSGTENHQGIVAVVKKR 94 (260)
T ss_pred EEEeeHHHHHHHHhcCCCceEEEEecccch-h-HHHHHHHHHhcCCeEEEECH-HHHHHHhCCCCCCeEEEEEecc
Confidence 6999999999999999 7888888888872 3 34477888889999977654 45665555332 3444444443
No 74
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=45.93 E-value=1.4e+02 Score=24.35 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=41.1
Q ss_pred HHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 136 VTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
+......|..+.|+-+.|. .++.. |-..++..|||++.+.+--.- =+--.+.||+|+ |+.+...++++.
T Consensus 41 ~~~W~~~G~~KiVl~~~~~--~el~~-l~~~a~~~~l~~~~v~DAG~T--ev~~gt~T~lai---gP~~~~~i~~it 109 (115)
T cd02430 41 LRAWEREGQKKIVLKVNSE--EELLE-LKKKAKSLGLPTSLIQDAGRT--QIAPGTITVLGI---GPAPEELIDKVT 109 (115)
T ss_pred HHHHHhcCCcEEEEecCCH--HHHHH-HHHHHHHcCCCeEEEEeCCCc--ccCCCCceEEEe---CCCCHHHHHHhh
Confidence 3445566767777777764 34544 788899999999988642110 111234677775 333444445543
No 75
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=45.69 E-value=97 Score=29.23 Aligned_cols=69 Identities=10% Similarity=0.183 Sum_probs=46.0
Q ss_pred CccEEEEeCC-CCchhhHHhHHHHhhhcCCCEEEeCCcchhhh-hhcCCCeEEEEEeecCcccHHHHHHHHHHHH
Q 024981 144 KAQLVVIAHD-VDPVELVVWLPALCRKMEIPYCIVKGKARLGV-IVHKKTASVLCLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 144 KAkLVVIA~D-vdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~-avGkk~~a~Vaitd~g~eDk~~l~klve~i~ 216 (259)
++.++|+-.+ =|.|+ .+|-.+|++.+.|.+.+.+.++|-. ++- .+..|+||---|-.....+++++.++
T Consensus 209 ~vD~miVVGg~~SsNT--~rL~eia~~~~~~t~~Ie~~~el~~~~~~--~~~~VGitaGASTP~~li~eV~~~l~ 279 (281)
T PRK12360 209 EVDVMIVIGGKHSSNT--QKLVKICEKNCPNTFHIETADELDLEMLK--DYKIIGITAGASTPDWIIEEVIKKIK 279 (281)
T ss_pred hCCEEEEecCCCCccH--HHHHHHHHHHCCCEEEECChHHCCHHHhC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 4445444444 46666 4588999999999999999999963 332 24678888666544444466665543
No 76
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=45.46 E-value=38 Score=25.19 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=28.8
Q ss_pred HHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHh
Q 024981 164 PALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKAN 218 (259)
Q Consensus 164 paLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~n 218 (259)
-..|...|+||+++-+..++.. ....|=-.+.+.+..-.++++++.++.+
T Consensus 45 ~~~a~~~g~p~~iiiG~~e~~~-----~~v~vk~~~~~~~~~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 45 IKYADKLGIPFIIIIGEKELEN-----GTVTVKDRDTGEQETVSLEELIEYLKEN 94 (94)
T ss_dssp HHHHHHTTESEEEEEEHHHHHT-----TEEEEEETTTTEEEEEECCHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEECchhHhC-----CEEEEEECCCCcEEEEEHHHHHHHHhhC
Confidence 3578889999999888887752 1122222233322223456677666643
No 77
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=45.45 E-value=35 Score=31.26 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCE--EEeCC--cchhhhhhcCCCeEEEEEee
Q 024981 124 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPY--CIVKG--KARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 124 ~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy--~~v~s--K~~LG~avGkk~~a~Vaitd 199 (259)
++|+.|..|+.+..+.+...-+++++|+.--.+ ++.-.+...|||+ |+... =...|...|-++-- .+.|
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~-----~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~--ptsd 156 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQ-----LIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNE--PTSD 156 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHH-----HHHHHHHHhCCcHhhhhhheeeeccCCcccccccCC--cccc
Confidence 457778999999999999999999999997654 2444568889999 44321 22467777755311 0122
Q ss_pred cCcccHHHHHHHHHHHHHhhhh
Q 024981 200 VKNEDKMEFSRILEAIKANFND 221 (259)
Q Consensus 200 ~g~eDk~~l~klve~i~~nynd 221 (259)
.+ --++++..++.|||+
T Consensus 157 sg-----gKa~~i~~lrk~~~~ 173 (227)
T KOG1615|consen 157 SG-----GKAEVIALLRKNYNY 173 (227)
T ss_pred CC-----ccHHHHHHHHhCCCh
Confidence 22 235777778888874
No 78
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=44.69 E-value=42 Score=27.09 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=29.4
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
....+||.+.|-. +....+-.+|++.++|++...+..
T Consensus 88 ~~~diVi~~~d~~--~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 88 DGVDLVIDAIDNI--AVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred cCCCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4678999999873 345668999999999999887743
No 79
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=44.19 E-value=1.7e+02 Score=23.71 Aligned_cols=61 Identities=3% Similarity=0.047 Sum_probs=35.4
Q ss_pred HHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC-CcchhhhhhcCCCeEEEEEee
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK-GKARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~-sK~~LG~avGkk~~a~Vaitd 199 (259)
.+.+......+++|.|..|-++.+ +...++++++||..+. ...++.+..|....-..-++|
T Consensus 85 ~~~~~~~~~~~~vi~i~~d~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid 146 (173)
T PRK03147 85 ELYPKYKEKGVEIIAVNVDETELA----VKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLID 146 (173)
T ss_pred HHHHHhhcCCeEEEEEEcCCCHHH----HHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEEC
Confidence 333334444567777777765543 3455677888887544 345777777766433333344
No 80
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=44.05 E-value=30 Score=26.90 Aligned_cols=35 Identities=34% Similarity=0.249 Sum_probs=25.1
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
.+.|||+|.|- + ++-..+-..|+.++||+..+...
T Consensus 60 ~~~lV~~at~d-~-~~n~~i~~~a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 60 GADLVFAATDD-P-ELNEAIYADARARGILVNVVDDP 94 (103)
T ss_dssp TESEEEE-SS--H-HHHHHHHHHHHHTTSEEEETT-C
T ss_pred hheEEEecCCC-H-HHHHHHHHHHhhCCEEEEECCCc
Confidence 37799998874 3 55567889999999999876643
No 81
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.77 E-value=83 Score=30.85 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=48.2
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeec-Cc--ccHHHHHHHHHHHH
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTV-KN--EDKMEFSRILEAIK 216 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~-g~--eDk~~l~klve~i~ 216 (259)
...+.+|+.|+.-+.-...+..+|+.+|||+..+.+-.+|..++..-.-.-+.|+|. |- .|...++++.+.+.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 357889999987666666799999999999998888888887665433223344444 33 23333445544443
No 82
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=43.60 E-value=93 Score=28.58 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=47.8
Q ss_pred cCCcccHHHHHHHHHHHHHHHHcCCC-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhh------------HH
Q 024981 95 KYRPEDRAAKKERLLKKAQAEAEGKT-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVEL------------VV 161 (259)
Q Consensus 95 kyrPE~k~eK~~rLl~~A~k~aaGk~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~el------------v~ 161 (259)
=|||- +.....+++...+.. .|-. ++.+ ..|+..+++++++|. +|.|..|-++.+- ..
T Consensus 143 vyr~~-~n~~~d~~~~~~R~~-~g~~~i~~~-----~~~~r~l~k~Lk~g~--~v~il~Dq~~~~gv~v~FFG~~a~t~~ 213 (290)
T PRK06628 143 IYRKA-NNPYVNKLVNESRAG-DKLRLIPKG-----PEGSRALVRAIKESE--SIVMLVDQKMNDGIEVPFLGHPAMTAS 213 (290)
T ss_pred EEecC-CCHHHHHHHHHHHHh-cCCceecCC-----CchHHHHHHHHHcCC--eEEEEecccCCCCeeeecCCCccccch
Confidence 37775 356677777666553 3432 2211 147899999999885 8899988876421 11
Q ss_pred hHHHHhhhcCCCEEEeCC
Q 024981 162 WLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 162 ~LpaLC~~~~VPy~~v~s 179 (259)
-...|+...|.|++.+..
T Consensus 214 ~~a~LA~~~~apvv~~~~ 231 (290)
T PRK06628 214 AIAKIALQYKYPIIPCQI 231 (290)
T ss_pred HHHHHHHHHCCCEEEEEE
Confidence 123577888888876554
No 83
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.91 E-value=73 Score=27.16 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=39.6
Q ss_pred cCccEEEEeC--CCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhh
Q 024981 143 NKAQLVVIAH--DVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFN 220 (259)
Q Consensus 143 kKAkLVVIA~--DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nyn 220 (259)
+..+.+|||. -++|.+++.+|- ..+-|+ +|++ ||.+.+-.|+||- +.++++-||+.+.
T Consensus 4 ~vtk~ivlapsa~vsp~elv~~l~----~~~~Pv-tiKe-------------TCfGaii~G~Ed~--v~klveriR~~d~ 63 (142)
T COG4029 4 NVTKYIVLAPSAGVSPKELVQKLL----ELSPPV-TIKE-------------TCFGAIIDGPEDE--VRKLVERIRELDG 63 (142)
T ss_pred cceEEEEEcCccCcChHHHHHHHH----hcCCCe-Eeee-------------eeeeeeecCcHHH--HHHHHHHHHHhcc
Confidence 3456788883 368888888764 456774 4443 6666666676654 6899999997654
No 84
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=42.77 E-value=60 Score=32.19 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=44.7
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
..+.+++...+++..+.-|+||.+....+....+-..|+.++|++.++.+-.++
T Consensus 189 lG~~~dL~~~v~~~~IdeViIAip~~~~~~l~ell~~~~~~~v~V~ivP~l~~~ 242 (463)
T PRK10124 189 AGNLQQLVEDAKAGKIHNVYIAMSMCDGARVKKLVRQLADTTCSVLLIPDVFTF 242 (463)
T ss_pred CCCHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHHcCCeEEEecchhhc
Confidence 345577889999999999999998776666677889999999999998886644
No 85
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=42.34 E-value=40 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=22.0
Q ss_pred EEEeCCCCc-hh--hHHhHHHHhhhcCCCEEEeC
Q 024981 148 VVIAHDVDP-VE--LVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 148 VVIA~DvdP-~e--lv~~LpaLC~~~~VPy~~v~ 178 (259)
+||.+.... +. ....||+.|...||||+...
T Consensus 119 ~VVT~E~~~~~~~~~~~KIPdvC~~~gV~ci~~~ 152 (162)
T PF14367_consen 119 TVVTHEVSNPNKKKKKIKIPDVCEHFGVPCINLF 152 (162)
T ss_pred EEEccCCCCCCCCccCCCCChhHHhCCCcCCCHH
Confidence 677777763 21 13559999999999998644
No 86
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=41.74 E-value=1.7e+02 Score=29.41 Aligned_cols=109 Identities=18% Similarity=0.317 Sum_probs=71.9
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeecCc-ccHHHHHHHHHHHH--------
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTVKN-EDKMEFSRILEAIK-------- 216 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~g~-eDk~~l~klve~i~-------- 216 (259)
-|+||+-- ++..++...|+++||..+.|.|..+... .+-.. --++++-...+ +.-...+.+++...
T Consensus 4 kiLIanrG---eia~ri~ra~~~lGi~tvav~s~~d~~~-~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~ 79 (449)
T COG0439 4 KILIANRG---EIAVRIIRACRELGIETVAVYSEADADA-LHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIH 79 (449)
T ss_pred eEEEecCc---hhHHHHHHHHHHhCCeEEEEeccccccc-hhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEc
Confidence 35676654 4677899999999999998888776664 22221 12233321111 11223344443322
Q ss_pred -----HhhhhhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcC
Q 024981 217 -----ANFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS 259 (259)
Q Consensus 217 -----~nynd~y~e~~~~wgg~~lg~ks~~~~~k~~k~~~~e~~~k~~ 259 (259)
..=|..+.|++..-|=...||.+.+.-....|..+++++++.|
T Consensus 80 pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aG 127 (449)
T COG0439 80 PGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAG 127 (449)
T ss_pred ccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcC
Confidence 1446788899999998889998877777779999999998875
No 87
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=41.74 E-value=78 Score=29.48 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=41.6
Q ss_pred hcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHH
Q 024981 142 QNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRI 211 (259)
Q Consensus 142 kkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~kl 211 (259)
.....+||.|.|- . .-...|-..|++++||++.+.+ +-|+--.+-+-|.|...-...-|+..
T Consensus 119 ~~~~D~VIdaiD~-~-~~k~~L~~~c~~~~ip~I~~gG------ag~k~dp~~~~~~di~~t~~~pla~~ 180 (268)
T PRK15116 119 SAGFSYVIDAIDS-V-RPKAALIAYCRRNKIPLVTTGG------AGGQIDPTQIQVVDLAKTIQDPLAAK 180 (268)
T ss_pred cCCCCEEEEcCCC-H-HHHHHHHHHHHHcCCCEEEECC------cccCCCCCeEEEEeeecccCChHHHH
Confidence 3468899999984 2 3345689999999999998754 33444466677777765433334443
No 88
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=41.43 E-value=62 Score=31.15 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=63.3
Q ss_pred cCCC----CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC--cchhhhhhcCC
Q 024981 117 EGKT----VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG--KARLGVIVHKK 190 (259)
Q Consensus 117 aGk~----~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s--K~~LG~avGkk 190 (259)
+|.+ +|+++|..+ ...+.+..++++|. +||.+.-- -+-++. .-....||--+|=++ .+.|...++-.
T Consensus 155 ~~rG~RRVVpSP~P~~I-vE~~~Ik~L~~~g~--vVI~~GGG-GIPVv~---~~~~~~GVeAVIDKDlasalLA~~i~AD 227 (312)
T COG0549 155 AGRGYRRVVPSPKPVRI-VEAEAIKALLESGH--VVIAAGGG-GIPVVE---EGAGLQGVEAVIDKDLASALLAEQIDAD 227 (312)
T ss_pred CCCCeeEecCCCCCccc-hhHHHHHHHHhCCC--EEEEeCCC-CcceEe---cCCCcceeeEEEccHHHHHHHHHHhcCC
Confidence 5664 889999876 57888888999884 55544432 110100 000122344444332 33455555544
Q ss_pred CeEE-----EEEeecCcccHHHHHHHH-HHHHHhhhhhhhhhhhccCCCCCCchhHHHHHHHH
Q 024981 191 TASV-----LCLTTVKNEDKMEFSRIL-EAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKE 247 (259)
Q Consensus 191 ~~a~-----Vaitd~g~eDk~~l~klv-e~i~~nynd~y~e~~~~wgg~~lg~ks~~~~~k~~ 247 (259)
.... -..++.|.+++..|+.+- +.++ .|.+ | -|+.-|-||||-.|.+.=.|
T Consensus 228 ~liILTdVd~Vy~n~gkp~q~~L~~v~~~e~~-~yl~---e--g~Fa~GSM~PKVeAai~Fv~ 284 (312)
T COG0549 228 LLIILTDVDAVYVNFGKPNQQALDRVTVDEME-KYLA---E--GQFAAGSMGPKVEAAISFVE 284 (312)
T ss_pred EEEEEeccchheecCCCccchhhcccCHHHHH-HHHh---c--CCCCCCCccHHHHHHHHHHH
Confidence 2111 112344556666665542 2222 2322 2 38899999999988876544
No 89
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=41.39 E-value=54 Score=25.65 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=28.0
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
..+.+||+.-|++..+-...+...+...++|++++.+|.+|
T Consensus 73 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl 113 (158)
T cd01879 73 EKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDE 113 (158)
T ss_pred CCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhh
Confidence 45667777777765433233334456679999999999887
No 90
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=41.00 E-value=1.9e+02 Score=24.80 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=43.2
Q ss_pred HhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCc--------ccHHHHHHHH
Q 024981 141 EQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKN--------EDKMEFSRIL 212 (259)
Q Consensus 141 ekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~--------eDk~~l~klv 212 (259)
++....+++|+.| ++.+. .+.++++++++.......++++..|....-+..++|.+. .-.+.+++++
T Consensus 101 ~~~~~~vv~Is~~-~~~~~----~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~le~ll 175 (189)
T TIGR02661 101 RAEETDVVMISDG-TPAEH----RRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHLESLL 175 (189)
T ss_pred HhcCCcEEEEeCC-CHHHH----HHHHHhcCCCcceeechhHHHHhccCCccceEEEECCCCeEEEccCCCCHHHHHHHH
Confidence 4445778888754 44333 456677777543222345677777755422233444321 2335688888
Q ss_pred HHHHHhhhh
Q 024981 213 EAIKANFND 221 (259)
Q Consensus 213 e~i~~nynd 221 (259)
++++++|..
T Consensus 176 ~~l~~~~~~ 184 (189)
T TIGR02661 176 EADREGFAS 184 (189)
T ss_pred HHHHcCcch
Confidence 888888764
No 91
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=39.60 E-value=59 Score=28.91 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHHHhcCcc--EEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 135 HVTYLIEQNKAQ--LVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 135 ~Vtk~IekkKAk--LVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
++...+....+. ++||..|-.+......+-.+|..+++|++++-+|.++
T Consensus 100 ~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 100 TTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred HHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 344444422333 4444444334444455677889999999888888775
No 92
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=38.79 E-value=78 Score=31.02 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=49.9
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCch------hhHHhHHHHhhhcCCCEEEeCCcchhhhhhc
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPV------ELVVWLPALCRKMEIPYCIVKGKARLGVIVH 188 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~------elv~~LpaLC~~~~VPy~~v~sK~~LG~avG 188 (259)
.+.+|.++|.++++-|-+.-++|+-..=-. +-+..+....+.+|-+++++.+--+.|.-+.
T Consensus 272 ~v~YG~~eV~~A~e~GAve~LLv~De~lr~~~~~~re~~~~ll~~ve~~ggkV~Ivs~~he~Ge~Lk 338 (352)
T COG1537 272 KVAYGLEEVEKAAEYGAVETLLVTDELLRSDDVEEREDVEELLEEVESMGGKVVIVSTEHEPGERLK 338 (352)
T ss_pred ceeEcHHHHHHHHhcCcceeEEeehhhhcccchhhHHHHHHHHHHHHHcCCeEEEEecCCcchHHHH
Confidence 489999999999999999999988655222 4455678889999999999999988886543
No 93
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=38.55 E-value=45 Score=26.75 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
.....++ ....+||.+.|- .+...++-.+|+++++|++....-
T Consensus 84 ~~~~~~~--~~~d~vi~~~d~--~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 84 ENIEELL--KDYDIVIDCVDS--LAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp HHHHHHH--HTSSEEEEESSS--HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred ccccccc--cCCCEEEEecCC--HHHHHHHHHHHHHcCCCEEEEEee
Confidence 4455555 356799999885 344566889999999999987654
No 94
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=38.08 E-value=33 Score=29.96 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=28.8
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
...+||.+.|- .+...++-.+|++++||++...+..-.|
T Consensus 113 ~~dvVi~~~d~--~~~~~~ln~~c~~~~ip~i~~~~~G~~G 151 (198)
T cd01485 113 KFTLVIATEEN--YERTAKVNDVCRKHHIPFISCATYGLIG 151 (198)
T ss_pred CCCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 46788877553 4556678999999999999877644444
No 95
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.86 E-value=4e+02 Score=26.13 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=41.4
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeecC
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTVK 201 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~g 201 (259)
|..++.+|..|..-+.-...|..+|+.+|||+..+.+..+|..++..-. +-.|-|-..|
T Consensus 166 G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG 225 (374)
T PRK14722 166 GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIG 225 (374)
T ss_pred CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCC
Confidence 4457888998886555567789999999999999998888876665322 3334344444
No 96
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=37.15 E-value=1.6e+02 Score=21.42 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=37.4
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhc-CCCEEEeCCcc
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKM-EIPYCIVKGKA 181 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~-~VPy~~v~sK~ 181 (259)
...-.+++...+++....++||-.+.+..+....+..+.... ++|++.+.+..
T Consensus 28 ~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~ 81 (112)
T PF00072_consen 28 TASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDED 81 (112)
T ss_dssp EESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESST
T ss_pred EECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCC
Confidence 455568888999999999999997776655555555555444 78887766443
No 97
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.88 E-value=1.7e+02 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHhHHHHhhhcCCCEEEeCCcchhhhhhc
Q 024981 160 VVWLPALCRKMEIPYCIVKGKARLGVIVH 188 (259)
Q Consensus 160 v~~LpaLC~~~~VPy~~v~sK~~LG~avG 188 (259)
......+++..||++..+..-.+++.-||
T Consensus 14 a~~~ek~lk~~gi~~~liP~P~~i~~~CG 42 (73)
T PF11823_consen 14 AMKAEKLLKKNGIPVRLIPTPREISAGCG 42 (73)
T ss_pred HHHHHHHHHHCCCcEEEeCCChhccCCCC
Confidence 34468899999999999999999998888
No 98
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=36.72 E-value=89 Score=28.22 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHhcCccEEEEeCCCC-----chhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 136 VTYLIEQNKAQLVVIAHDVD-----PVELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~Dvd-----P~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
+...++...+.+||++.|+. +.++..++..+ ...++|+..|.+.-+
T Consensus 23 l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l-~~l~~pv~~V~GNhD 73 (224)
T cd07388 23 LVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRIL-GEAHLPTFYVPGPQD 73 (224)
T ss_pred HHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHH-HhcCCceEEEcCCCC
Confidence 33344446788999999983 33344433333 455688887776544
No 99
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=36.68 E-value=33 Score=33.00 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=32.6
Q ss_pred HHHHHHHhcCccEEEEeCCCC--chhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 135 HVTYLIEQNKAQLVVIAHDVD--PVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~Dvd--P~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+-.-++|+....-|+++.|+| +.-.-....++|.+.+||+.+|.+|-+=
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK 260 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDK 260 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhh
Confidence 334456666666666666654 3223334578999999999999987543
No 100
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=36.38 E-value=1.2e+02 Score=28.25 Aligned_cols=49 Identities=31% Similarity=0.444 Sum_probs=37.8
Q ss_pred EEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc--chhhhhhcCCCeEEEEE
Q 024981 148 VVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK--ARLGVIVHKKTASVLCL 197 (259)
Q Consensus 148 VVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK--~~LG~avGkk~~a~Vai 197 (259)
+|+..=|++ ++...+...|+.+|||++.+.+. ..|...+|.+.....+.
T Consensus 55 iV~~Tlv~~-~lr~~l~~~~~~~~i~~~Dll~~~l~~l~~~lg~~p~~~pg~ 105 (255)
T PF03618_consen 55 IVFYTLVDP-ELREYLEEFCREHGIPCVDLLGPLLSALEEFLGQKPSRKPGL 105 (255)
T ss_pred EEEEeCCCH-HHHHHHHHHHHhcCCCEEeccHHHHHHHHHHHCcCcccccCc
Confidence 566666777 78888999999999999988764 57888888876444443
No 101
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.19 E-value=3.5e+02 Score=25.16 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=48.4
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhc---C-CCeEEEEEeecCcc--cHHHHHHHHHHHH
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH---K-KTASVLCLTTVKNE--DKMEFSRILEAIK 216 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avG---k-k~~a~Vaitd~g~e--Dk~~l~klve~i~ 216 (259)
.....+|+.|-..+..+..+...|+.+++|+....+...|..++. . ..+-.|-|-..|.. |...+.++.+.++
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 456777888877667777788999999999988888777776653 1 12344444444443 4555666665554
No 102
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=36.00 E-value=1.2e+02 Score=28.00 Aligned_cols=87 Identities=24% Similarity=0.321 Sum_probs=54.6
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC---C-cchhhhhhcCCC----e-EEEEEeecC
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK---G-KARLGVIVHKKT----A-SVLCLTTVK 201 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~---s-K~~LG~avGkk~----~-a~Vaitd~g 201 (259)
.|++.-.+...+--+.= ||-+|..+.+. ..+-..|+++|+.++..- + .+++-..+.... + +..++|-..
T Consensus 106 ~G~e~F~~~~~~aGvdg-viipDLP~ee~-~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~ 183 (263)
T CHL00200 106 YGINKFIKKISQAGVKG-LIIPDLPYEES-DYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLK 183 (263)
T ss_pred hCHHHHHHHHHHcCCeE-EEecCCCHHHH-HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCC
Confidence 46555444444433444 46789977554 557899999999887532 2 457777666553 1 344555554
Q ss_pred cccHHHHHHHHHHHHHhh
Q 024981 202 NEDKMEFSRILEAIKANF 219 (259)
Q Consensus 202 ~eDk~~l~klve~i~~ny 219 (259)
.+....+.++++.+|.+.
T Consensus 184 ~~~~~~~~~~i~~ir~~t 201 (263)
T CHL00200 184 TELDKKLKKLIETIKKMT 201 (263)
T ss_pred ccccHHHHHHHHHHHHhc
Confidence 444466788888888754
No 103
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=36.00 E-value=1.4e+02 Score=23.72 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=32.9
Q ss_pred HHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC-CcchhhhhhcCC
Q 024981 140 IEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK-GKARLGVIVHKK 190 (259)
Q Consensus 140 IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~-sK~~LG~avGkk 190 (259)
...+.+.+|.|+.|-++. +...+++++++|.++. ....+....|..
T Consensus 58 ~~~~~v~~v~v~~~~~~~-----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 58 YKDKGVDVVGVSSDDDPP-----VREFLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp HHTTTCEEEEEEESSSHH-----HHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred hccCceEEEEecccCCHH-----HHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence 344568888888887774 4566677888887765 456788888855
No 104
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=35.74 E-value=90 Score=30.95 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=22.6
Q ss_pred hhhhhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 024981 218 NFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKLLAKEAA 255 (259)
Q Consensus 218 nynd~y~e~~~~wgg~~lg~ks~~~~~k~~k~~~~e~~ 255 (259)
+|+- .|+-..+|||.||.. .-||.+|=..+..|+
T Consensus 297 ~~~p--geHgsTyggNpLg~~--vaiAalevi~eekL~ 330 (427)
T KOG1402|consen 297 NIKP--GEHGSTYGGNPLGCA--VAIAALEVIVEEKLV 330 (427)
T ss_pred ccCC--CccccccCCChHHHH--HHHHHHHHHHHHHHH
Confidence 3543 468889999999954 456666655554443
No 105
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=35.05 E-value=64 Score=30.35 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=30.5
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVI 186 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~a 186 (259)
+..+||++.| +. +...++-++|++.+||++...+.--.|+.
T Consensus 105 ~fdvVV~~~~-~~-~~~~~in~~c~~~~ipfI~a~~~G~~G~v 145 (286)
T cd01491 105 KFQVVVLTDA-SL-EDQLKINEFCHSPGIKFISADTRGLFGSI 145 (286)
T ss_pred cCCEEEEecC-CH-HHHHHHHHHHHHcCCEEEEEeccccEEEE
Confidence 4567777765 44 55567999999999999988876655543
No 106
>PRK09932 glycerate kinase II; Provisional
Probab=34.66 E-value=3.3e+02 Score=26.92 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=55.1
Q ss_pred eEecchHHHHHHHHh----cCccEEEEeCCCCc-h----hhHHhHHHHhhhcCCCEEEeCCcchhhh--hhcCCCeEEEE
Q 024981 128 VVKYGLNHVTYLIEQ----NKAQLVVIAHDVDP-V----ELVVWLPALCRKMEIPYCIVKGKARLGV--IVHKKTASVLC 196 (259)
Q Consensus 128 ~l~~G~n~Vtk~Iek----kKAkLVVIA~DvdP-~----elv~~LpaLC~~~~VPy~~v~sK~~LG~--avGkk~~a~Va 196 (259)
.+.+|++.|..++.= ..+.|||..+-.-. . .....+-.+|++++||++.+-+.-..+. +-.....++..
T Consensus 264 ~l~~G~d~v~~~~~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~~~~~~~~g~~~~~~ 343 (381)
T PRK09932 264 DIKPGIEIVLNAVNLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFS 343 (381)
T ss_pred EEccHHHHHHHhcChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecccCCChHHHHhcCceEEEE
Confidence 488999999888732 45899988775321 1 2234467899999999997766543332 21212345555
Q ss_pred EeecCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q 024981 197 LTTVKNEDKMEFSRILEAIKANFNDKYDEHRK 228 (259)
Q Consensus 197 itd~g~eDk~~l~klve~i~~nynd~y~e~~~ 228 (259)
+.+.... |++.++.-..|..+.-+.+.+
T Consensus 344 i~~~~~~----l~~a~~~~~~~l~~~~~~~~~ 371 (381)
T PRK09932 344 ILPRLAP----LAEVLASGETNLFNSARNIAC 371 (381)
T ss_pred cCCCCCC----HHHHHHHHHHHHHHHHHHHHH
Confidence 5553322 344444334444444444443
No 107
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=34.62 E-value=1.5e+02 Score=27.97 Aligned_cols=42 Identities=33% Similarity=0.443 Sum_probs=32.4
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.+-+..+++++ +++||||.|..- ..-|+.|=++++||++-+-
T Consensus 57 ~~i~~~l~~~~-ik~lVIACNTAS---a~al~~LR~~~~iPVvGvi 98 (269)
T COG0796 57 LEIVDFLLERG-IKALVIACNTAS---AVALEDLREKFDIPVVGVI 98 (269)
T ss_pred HHHHHHHHHcC-CCEEEEecchHH---HHHHHHHHHhCCCCEEEec
Confidence 45666777778 999999999743 2347899999999998544
No 108
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=34.60 E-value=2.9e+02 Score=26.48 Aligned_cols=74 Identities=8% Similarity=0.120 Sum_probs=50.7
Q ss_pred ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhh
Q 024981 145 AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFN 220 (259)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nyn 220 (259)
+.|+|+-.+-.-..- ..|-.+|+++|.|-+.+.+-++|....=.. ..+|+||---+--..--.++++.+++.+.
T Consensus 213 ~Dl~iVVG~~nSSNs-~rL~eiA~~~g~~aylId~~~ei~~~w~~~-~~~VGvTAGAStPd~lV~~Vi~~l~~~~~ 286 (294)
T COG0761 213 VDLVIVVGSKNSSNS-NRLAEIAKRHGKPAYLIDDAEEIDPEWLKG-VKTVGVTAGASTPDWLVQEVIAKLRELGA 286 (294)
T ss_pred CCEEEEECCCCCccH-HHHHHHHHHhCCCeEEeCChHhCCHHHhcC-ccEEEEecCCCCCHHHHHHHHHHHHHhcC
Confidence 667777666544332 458899999999999999999998644333 36688886655333344666777776663
No 109
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=34.48 E-value=1.5e+02 Score=26.87 Aligned_cols=54 Identities=26% Similarity=0.245 Sum_probs=37.3
Q ss_pred hcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcc
Q 024981 142 QNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNE 203 (259)
Q Consensus 142 kkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~e 203 (259)
.....+||.|.|-.+ ....|-.+|.+++||++...+- =|+--.+-+-|.|...-
T Consensus 100 ~~~~D~VvdaiD~~~--~k~~L~~~c~~~~ip~I~s~g~------g~~~dp~~i~i~di~~t 153 (231)
T cd00755 100 GGDPDFVVDAIDSIR--AKVALIAYCRKRKIPVISSMGA------GGKLDPTRIRVADISKT 153 (231)
T ss_pred cCCCCEEEEcCCCHH--HHHHHHHHHHHhCCCEEEEeCC------cCCCCCCeEEEccEecc
Confidence 345889999988543 3456899999999999987651 12222566677777543
No 110
>PRK01889 GTPase RsgA; Reviewed
Probab=33.85 E-value=51 Score=31.53 Aligned_cols=26 Identities=27% Similarity=0.086 Sum_probs=19.2
Q ss_pred hHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 159 LVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 159 lv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
+...+..+|+..|+|.+++.+|.+|-
T Consensus 130 ~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 130 RIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 45566777788888888888888773
No 111
>PRK00124 hypothetical protein; Validated
Probab=33.84 E-value=86 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=25.2
Q ss_pred EEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 148 VVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 148 VVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
++|=.|+-| ++..+-.+|++++||+++|.|
T Consensus 3 I~VDADACP--Vk~~i~r~a~r~~i~v~~Vas 32 (151)
T PRK00124 3 IYVDADACP--VKDIIIRVAERHGIPVTLVAS 32 (151)
T ss_pred EEEECCCCc--HHHHHHHHHHHHCCeEEEEEe
Confidence 677788888 667788999999999999874
No 112
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=33.54 E-value=2.5e+02 Score=23.67 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=48.8
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhc----CCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH----KKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avG----kk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.+.+||.|.|-+... ..+-.+|+. ++++..+ +..++|...- +..--.|||+..|.. ...-..|-+.|.+.|
T Consensus 70 ~a~lViaaT~d~e~N--~~i~~~a~~-~~~vn~~-d~~~~~~f~~pa~v~~~~l~iaisT~G~s-P~la~~lr~~ie~~l 144 (157)
T PRK06719 70 DAHLIYAATNQHAVN--MMVKQAAHD-FQWVNVV-SDGTESSFHTPGVIRNDEYVVTISTSGKD-PSFTKRLKQELTSIL 144 (157)
T ss_pred CceEEEECCCCHHHH--HHHHHHHHH-CCcEEEC-CCCCcCcEEeeeEEEECCeEEEEECCCcC-hHHHHHHHHHHHHHh
Confidence 478899988765533 445678877 4676644 4444564332 222467888877743 333345557777777
Q ss_pred hhhhhhhhhc
Q 024981 220 NDKYDEHRKK 229 (259)
Q Consensus 220 nd~y~e~~~~ 229 (259)
-+.|+.+-+.
T Consensus 145 ~~~~~~~a~~ 154 (157)
T PRK06719 145 PKLIKKISRT 154 (157)
T ss_pred hHHHHHHHhh
Confidence 7777766543
No 113
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=33.33 E-value=1.2e+02 Score=28.84 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=63.3
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHH
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFS 209 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~ 209 (259)
--|.--+...+-+..=+++..- .-|.+....=-.+....+|-+..-.+=..|+..+.-+..-.+.++|+..|.++++.
T Consensus 96 YpGSP~lA~~llR~qDRl~l~E--LHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~ 173 (279)
T COG2961 96 YPGSPLLARQLLREQDRLVLTE--LHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQ 173 (279)
T ss_pred CCCCHHHHHHHcchhceeeeee--cCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHH
Confidence 3455555666656555665443 33333322112334455666666667778888888776556778999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhccCCCCC
Q 024981 210 RILEAIKANFNDKYDEHRKKWGGGIM 235 (259)
Q Consensus 210 klve~i~~nynd~y~e~~~~wgg~~l 235 (259)
.+|+++++.| +.|.+|+.
T Consensus 174 rvv~~l~~~~--------kRf~~g~y 191 (279)
T COG2961 174 RVVEALAEAY--------KRFATGTY 191 (279)
T ss_pred HHHHHHHHHH--------HhhcCceE
Confidence 9999999876 46666664
No 114
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=33.26 E-value=1.3e+02 Score=24.23 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=31.8
Q ss_pred HHHHHHhcCccEEEEeC-CCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 136 VTYLIEQNKAQLVVIAH-DVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~-DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
+..+.+.|-+.|+|-.. ..+ ++-..+.++|+++++|++.+.....+.
T Consensus 65 i~~L~~~~~agL~i~~~~~~~--~iP~~~i~~A~~~~lPli~ip~~~~f~ 112 (123)
T PF07905_consen 65 IRELAEKGAAGLGIKTGRYLD--EIPEEIIELADELGLPLIEIPWEVPFS 112 (123)
T ss_pred HHHHHHCCCeEEEEeccCccc--cCCHHHHHHHHHcCCCEEEeCCCCCHH
Confidence 44455566677777444 333 444567899999999999888755443
No 115
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=33.23 E-value=86 Score=30.16 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=42.5
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCCch------------------hhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVDPV------------------ELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvdP~------------------elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
++...++.+|+++ ..+-|+|+|.+|. +.+.|+.+.|++++|-+++-.-..++
T Consensus 9 s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~eP~~~~~yv~~~l~~C~~~~Idv~~P~~~~~~ 78 (329)
T PF15632_consen 9 SSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLEPADGEEYVDWCLDFCKEHGIDVFVPGRNREL 78 (329)
T ss_pred ccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeecCCCHHHHHHHHHHHHHHhCCeEEEcCccHHH
Confidence 5678888999998 8888899888763 77899999999999999876654444
No 116
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=33.14 E-value=50 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=24.1
Q ss_pred HHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 136 VTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
...+++.+ +..+|+..+..|.+- +..+|++.+||++.+.
T Consensus 54 ~~~a~~~~-i~~iIltg~~~~~~~---v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 54 QLAAIEAG-IACIILTGGLEPSEE---VLELAKELGIPVISTP 92 (105)
T ss_dssp HHHHCCTT-ECEEEEETT----HH---HHHHHHHHT-EEEE-S
T ss_pred HHHHHHhC-CCEEEEeCCCCCCHH---HHHHHHHCCCEEEEEC
Confidence 34444444 888889988877654 5689999999998765
No 117
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.79 E-value=2e+02 Score=22.47 Aligned_cols=69 Identities=7% Similarity=0.138 Sum_probs=39.9
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
+++|+..-.-.+++. .-..|+++|+|++-+-+...|..++.....-++-+. .+..+...|.-++...-.
T Consensus 47 ~I~iS~SG~t~e~i~-~~~~a~~~g~~iI~IT~~~~l~~~~~~~~~~~~~~p-~~~~~r~s~~~~~~~~~~ 115 (119)
T cd05017 47 VIAVSYSGNTEETLS-AVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIP-KGLQPRAAFPYLFTALLN 115 (119)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHCCCEEEEEeCCchHHHHHHHcCCcEEECC-CCCCCceeHHHHHHHHHH
Confidence 444444444445544 566788888888766555667777765543333332 223356677777766543
No 118
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=32.76 E-value=3e+02 Score=24.14 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=15.6
Q ss_pred HHhhhcCCCEEEeCCcchhh
Q 024981 165 ALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 165 aLC~~~~VPy~~v~sK~~LG 184 (259)
..++..||||+++-+..++-
T Consensus 61 ~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 61 NDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred HHHHhCCCCEEEEECcchhh
Confidence 56889999999877766653
No 119
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=32.60 E-value=1.3e+02 Score=27.54 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCCceEecch-----HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 124 KKPIVVKYGL-----NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 124 ~~p~~l~~G~-----n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
=||.+|.+|. +.+.+++++ +.|+|+-.---...-+..|+..+.++|.|++++.-
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~--~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~ 207 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSK--TDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNL 207 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHh--CCEEEEEccCCccccHHHHHHHHHHcCCeEEEECC
Confidence 5899999999 456666543 55655443321222345588889999999988764
No 120
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=31.59 E-value=1e+02 Score=24.28 Aligned_cols=40 Identities=33% Similarity=0.572 Sum_probs=24.0
Q ss_pred HHHHHHHhcCccEEEEeCCC-CchhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 135 HVTYLIEQNKAQLVVIAHDV-DPVELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~Dv-dP~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
.+...+ .++.+||++.|+ ++.++...+..+ |+..+.+.-+
T Consensus 18 ~~~~~~--~~~d~vi~~GDi~~~~~~~~~~~~~------~~~~v~GNHD 58 (156)
T PF12850_consen 18 AVLEYI--NEPDFVIILGDIFDPEEVLELLRDI------PVYVVRGNHD 58 (156)
T ss_dssp HHHHHH--TTESEEEEES-SCSHHHHHHHHHHH------EEEEE--CCH
T ss_pred HHHHHh--cCCCEEEECCCchhHHHHHHHHhcC------CEEEEeCCcc
Confidence 444455 469999999999 665554444222 7877776655
No 121
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.40 E-value=1.1e+02 Score=27.59 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=9.8
Q ss_pred HHHHHHHhcCccEEEEeCCC
Q 024981 135 HVTYLIEQNKAQLVVIAHDV 154 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~Dv 154 (259)
.+...+.+.++.+|||+.|+
T Consensus 30 ~l~~~~~~~~~D~lli~GDi 49 (253)
T TIGR00619 30 DLLEFAKAEQIDALLVAGDV 49 (253)
T ss_pred HHHHHHHHcCCCEEEECCcc
Confidence 33334444445555555555
No 122
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=31.23 E-value=2.6e+02 Score=23.57 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=44.3
Q ss_pred chHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHH
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRI 211 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~kl 211 (259)
-..++..++..|++..+|+..++.. .+.+..+-++.+.......+.. -.....++++...+.+-...|++.
T Consensus 142 ~~~~~~~~l~~G~~Da~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~n~~ 212 (232)
T TIGR03871 142 PPGRMVEDLAAGEIDVAIVWGPIAG--------YFAKQAGPPLVVVPLLPEDGGI-PFDYRIAMGVRKGDKAWKDELNAV 212 (232)
T ss_pred CHHHHHHHHHcCCcCEEEeccHHHH--------HHHHhCCCCceeeccccCCCCC-CccceEEEEEecCCHHHHHHHHHH
Confidence 3578899999999999887654311 1222222233222111100000 011134555554333333444444
Q ss_pred HHHHHHhhhhhhhhhhhccCC
Q 024981 212 LEAIKANFNDKYDEHRKKWGG 232 (259)
Q Consensus 212 ve~i~~nynd~y~e~~~~wgg 232 (259)
++.+ ...+++|.++||=
T Consensus 213 l~~~----~~~~~~i~~kyg~ 229 (232)
T TIGR03871 213 LDRR----QAEIDAILREYGV 229 (232)
T ss_pred HHHH----HHHHHHHHHHcCC
Confidence 4443 3468899999974
No 123
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=31.00 E-value=93 Score=24.98 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=6.3
Q ss_pred HHhhhcCCCEEEeC
Q 024981 165 ALCRKMEIPYCIVK 178 (259)
Q Consensus 165 aLC~~~~VPy~~v~ 178 (259)
..++..+++++.+.
T Consensus 65 ~~~~~~~~~ii~iS 78 (141)
T cd01857 65 EYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHhcCCeEEEEE
Confidence 34444455444443
No 124
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.61 E-value=1.9e+02 Score=28.57 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=47.0
Q ss_pred hcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeec-Cc--ccHHHHHHHHHHHH
Q 024981 142 QNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTV-KN--EDKMEFSRILEAIK 216 (259)
Q Consensus 142 kkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~-g~--eDk~~l~klve~i~ 216 (259)
.+..+..+|..|-.-+.-...+...|+..|+|+..+.+..+|..++..-...-+.|+|. |. .|...++.|.+.+.
T Consensus 249 ~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 249 YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 44567888877754333345577889999999988888888877765432223445553 22 44445555555555
No 125
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=30.61 E-value=1.1e+02 Score=27.54 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchh------hHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVE------LVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~e------lv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
..++..|.+.++.+||++.|+.... ....+-..+...++|+..+.+.-+..
T Consensus 30 ~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~ 86 (267)
T cd07396 30 EEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLGNHDLY 86 (267)
T ss_pred HHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecCccccc
Confidence 4556677777799999999996321 12334566677889999998877654
No 126
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=30.18 E-value=1e+02 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=24.6
Q ss_pred cEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 146 QLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 146 kLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
.++++-.|.+..+.-..+...+++++.|+++|.+|.++
T Consensus 82 d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~ 119 (197)
T cd04104 82 DFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDR 119 (197)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 33333334443333344556777789999999999998
No 127
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=29.77 E-value=54 Score=31.68 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=47.5
Q ss_pred HHHHhhhcCCCEEEeCCcchhhhhhc-------------CCCeEEEEEeecCc---------ccHHHHHHHHHHHHHhhh
Q 024981 163 LPALCRKMEIPYCIVKGKARLGVIVH-------------KKTASVLCLTTVKN---------EDKMEFSRILEAIKANFN 220 (259)
Q Consensus 163 LpaLC~~~~VPy~~v~sK~~LG~avG-------------kk~~a~Vaitd~g~---------eDk~~l~klve~i~~nyn 220 (259)
-.+|+.+.+||++-++.-+-+|.-|| ++.+-||.|+|.-+ |=.+..+++|.++-|+.
T Consensus 168 Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel- 246 (368)
T COG1223 168 AKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL- 246 (368)
T ss_pred HHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhc-
Confidence 46889999999999999999999888 34567899988642 11122344555555543
Q ss_pred hhhhhhhhccCCCCCC
Q 024981 221 DKYDEHRKKWGGGIMG 236 (259)
Q Consensus 221 d~y~e~~~~wgg~~lg 236 (259)
|-|...||=...+
T Consensus 247 ---Dgi~eneGVvtIa 259 (368)
T COG1223 247 ---DGIKENEGVVTIA 259 (368)
T ss_pred ---cCcccCCceEEEe
Confidence 5566777755444
No 128
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.71 E-value=67 Score=28.08 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.8
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
...+||.+.| +.+....+-.+|++++||++......-.|
T Consensus 110 ~~dvVi~~~~--~~~~~~~ln~~c~~~~ip~i~~~~~G~~G 148 (197)
T cd01492 110 QFDVVVATEL--SRAELVKINELCRKLGVKFYATGVHGLFG 148 (197)
T ss_pred CCCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEEecCCEE
Confidence 4678888876 34555679999999999998876544333
No 129
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=29.70 E-value=87 Score=25.07 Aligned_cols=49 Identities=8% Similarity=-0.005 Sum_probs=37.4
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
-..++.++...+....+.+|+++.++.- ....+..+|..+|||+..+..
T Consensus 35 ~a~~~~e~~~~~~~~~~DvIll~PQi~~--~~~~i~~~~~~~~ipv~~I~~ 83 (104)
T PRK09590 35 DAITATEGEKAIAAAEYDLYLVSPQTKM--YFKQFEEAGAKVGKPVVQIPP 83 (104)
T ss_pred EEecHHHHHHhhccCCCCEEEEChHHHH--HHHHHHHHhhhcCCCEEEeCH
Confidence 3467777777667777899999999864 235578899999999977654
No 130
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=29.67 E-value=3.7e+02 Score=24.70 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=64.1
Q ss_pred cchHHHHHHHHhc----CccE-EEEeCCCCchhhHHhHHHHhhhcCCCEE-EeCCcchhhhhhcCCCeEEEEEeecCccc
Q 024981 131 YGLNHVTYLIEQN----KAQL-VVIAHDVDPVELVVWLPALCRKMEIPYC-IVKGKARLGVIVHKKTASVLCLTTVKNED 204 (259)
Q Consensus 131 ~G~n~Vtk~Iekk----KAkL-VVIA~DvdP~elv~~LpaLC~~~~VPy~-~v~sK~~LG~avGkk~~a~Vaitd~g~eD 204 (259)
.|...+.+.|+.- ...+ -||..|+....-...+..+.+.++.++. ++.....+..+..... .+...+.++..
T Consensus 160 ~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~--pv~~~~p~s~a 237 (295)
T PRK13234 160 YAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAARLGSKLIHFVPRDNIVQHAELRRM--TVIEYAPDSKQ 237 (295)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCchHHHHHHHHHHHhCCceEEECCCchHHHHHHHcCC--ceEEECCCCHH
Confidence 5777776666542 1222 3555676533223446677778887654 4566666666655443 22234445444
Q ss_pred HHHHHHHHHHHHHh----------hhhhhhhhhhccCCCCCCchhHHHHHHHHH
Q 024981 205 KMEFSRILEAIKAN----------FNDKYDEHRKKWGGGIMGSKSQAKTKAKEK 248 (259)
Q Consensus 205 k~~l~klve~i~~n----------ynd~y~e~~~~wgg~~lg~ks~~~~~k~~k 248 (259)
..++.+|.+.+-+. +.++.+++-+.||---|-.-|.+.++..|.
T Consensus 238 a~~y~~La~ell~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (295)
T PRK13234 238 AGEYRALAEKIHANSGKGTIPTPITMEELEDMLMDFGIMKTDEQSLAELAAKEA 291 (295)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHhhhhhhhhhhhccchhhh
Confidence 44566666655543 235666777899944444455555555553
No 131
>PRK00098 GTPase RsgA; Reviewed
Probab=29.58 E-value=62 Score=30.01 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHhcCccEEEEeCCCCch---hhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 138 YLIEQNKAQLVVIAHDVDPV---ELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 138 k~IekkKAkLVVIA~DvdP~---elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
..++...+..||+.+=+|-. +....+...++..|+|++.+..+.
T Consensus 105 ~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 105 VLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred HHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 33455556666666544421 111223344556677776655444
No 132
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=29.57 E-value=64 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=28.7
Q ss_pred ccEEEEeCCCC----chhhHHhHHHHhhhcC--CCEEEeCCcchhh
Q 024981 145 AQLVVIAHDVD----PVELVVWLPALCRKME--IPYCIVKGKARLG 184 (259)
Q Consensus 145 AkLVVIA~Dvd----P~elv~~LpaLC~~~~--VPy~~v~sK~~LG 184 (259)
+.++|+.-|.+ ..++..++..+....+ +|++++.+|.++.
T Consensus 73 ~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 73 SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 45666777775 3455666777766665 9999999998874
No 133
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=29.45 E-value=2.5e+02 Score=21.30 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=26.0
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
..+.|+|.-|-.+.+....+-.+.++++||..+.-.
T Consensus 4 ~~~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~ 39 (123)
T PF01522_consen 4 PKKSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVI 39 (123)
T ss_dssp TSSEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-
T ss_pred CCCEEEEEEecCchhhHHHHHHHHHhcccceeeeec
Confidence 356788888888877777888999999999876443
No 134
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=29.41 E-value=1.8e+02 Score=23.65 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=45.4
Q ss_pred cEEEEeCC-CCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEee-cCcccHHHHHHHHHHHHHhhhh
Q 024981 146 QLVVIAHD-VDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTT-VKNEDKMEFSRILEAIKANFND 221 (259)
Q Consensus 146 kLVVIA~D-vdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd-~g~eDk~~l~klve~i~~nynd 221 (259)
+.+..-.+ .++.++.. .-.....|++...+...+....+.....++.+.. .+.++...+.+.++.+...|.+
T Consensus 53 ~~~~y~~~~~~~~~l~~----fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~ 126 (184)
T PF13848_consen 53 KPVVYDGDKFTPEELKK----FIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG 126 (184)
T ss_dssp SEEEESSSTTSHHHHHH----HHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT
T ss_pred CceecccccCCHHHHHH----HHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC
Confidence 33444444 44545544 4578889999988988999999988754455544 3444445555555666666654
No 135
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=29.31 E-value=1.3e+02 Score=29.32 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=42.6
Q ss_pred chHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCC-CEEEeCCcchhh
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEI-PYCIVKGKARLG 184 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~V-Py~~v~sK~~LG 184 (259)
|..+....+++..+.-|+||.+-...+....+-..|+..++ .+..+.+-.++.
T Consensus 176 g~~~l~~~i~~~~id~ViIAip~~~~~~~~~ll~~l~~~~v~~V~~vP~~~e~~ 229 (456)
T TIGR03022 176 GADDALRLYARTRYAYVIVAMPGTQAEDMARLVRKLGALHFRNVLIVPSLFGLP 229 (456)
T ss_pred ChhHHHHHHHhCCCCEEEEecCCccHHHHHHHHHHHHhCCCeEEEEeCcccccc
Confidence 44778888998999999999876555566668889999999 888888877765
No 136
>PLN02591 tryptophan synthase
Probab=29.03 E-value=2.5e+02 Score=25.82 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=52.3
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE-e-CCc--chhhhhhcCCC----e-EEEEEeecC
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI-V-KGK--ARLGVIVHKKT----A-SVLCLTTVK 201 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~-v-~sK--~~LG~avGkk~----~-a~Vaitd~g 201 (259)
.|++...+...+--+.=||| .|..+.+. ..+...|+++|+..+. + .+. +++-....... + +..++|-..
T Consensus 93 ~G~~~F~~~~~~aGv~Gvii-pDLP~ee~-~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVV-PDLPLEET-EALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEe-CCCCHHHH-HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 36666555555544444444 48866554 5578999999998875 4 333 45666665553 2 234455544
Q ss_pred cccHHHHHHHHHHHHH
Q 024981 202 NEDKMEFSRILEAIKA 217 (259)
Q Consensus 202 ~eDk~~l~klve~i~~ 217 (259)
......+.++++.++.
T Consensus 171 ~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 171 ASVSGRVESLLQELKE 186 (250)
T ss_pred cCCchhHHHHHHHHHh
Confidence 4445667888888886
No 137
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=28.85 E-value=1.8e+02 Score=21.07 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=25.7
Q ss_pred HHHHHHhcC--ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 136 VTYLIEQNK--AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 136 Vtk~IekkK--AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
+-+++++-+ -.|.|++.|-. . ..-+|.+|+.+|-.+..+.
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~--a-~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPG--F-ARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCcc--H-HHHHHHHHHHcCCEEEEEE
Confidence 444555433 24777777643 3 3458999999998886433
No 138
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.84 E-value=1.3e+02 Score=25.25 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.8
Q ss_pred hhHHhHHHHhhhcCCCEEEeCC
Q 024981 158 ELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 158 elv~~LpaLC~~~~VPy~~v~s 179 (259)
.+...+..+|+++||||+-+..
T Consensus 133 ~~~~~~~~~a~~~~~~~vD~~~ 154 (198)
T cd01821 133 DYPAAMRELAAEEGVPLIDLNA 154 (198)
T ss_pred hHHHHHHHHHHHhCCCEEecHH
Confidence 4566789999999999987654
No 139
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=28.78 E-value=1.5e+02 Score=23.77 Aligned_cols=45 Identities=13% Similarity=0.297 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCc-------hhhHHhHHHHhhhcCCCEEEe
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDP-------VELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP-------~elv~~LpaLC~~~~VPy~~v 177 (259)
+..++..+++..++++++..-..+ ..+-..+..+|++++++|+..
T Consensus 90 l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~ 141 (177)
T cd01822 90 LRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPF 141 (177)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEech
Confidence 344555555556676666432222 134455778999999998753
No 140
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.64 E-value=3e+02 Score=25.57 Aligned_cols=113 Identities=18% Similarity=0.253 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC----CCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 101 RAAKKERLLKKAQAEAEGKTVE----SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~----~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
.-++...++..|+. +|-..| +=--+.+.+|....+.-+++--|.= +|-.|+-|.|- ..+..-|+++||.++-
T Consensus 78 tl~~i~emvk~ar~--~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanG-fiivDlPpEEa-~~~Rne~~k~gislvp 153 (268)
T KOG4175|consen 78 TLNSIIEMVKEARP--QGVTCPIILMGYYNPILRYGVENYIQVAKNAGANG-FIIVDLPPEEA-ETLRNEARKHGISLVP 153 (268)
T ss_pred cHHHHHHHHHHhcc--cCcccceeeeecccHHHhhhHHHHHHHHHhcCCCc-eEeccCChHHH-HHHHHHHHhcCceEEE
Confidence 34567777777765 554333 2222346678777776666544443 34568977665 5589999999988764
Q ss_pred e----CCcchhhhhhcCC-----CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 177 V----KGKARLGVIVHKK-----TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 177 v----~sK~~LG~avGkk-----~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
. -+.++|--+++-. ..+.++.|-..+.=...|..|+.-+|.
T Consensus 154 LvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk 203 (268)
T KOG4175|consen 154 LVAPSTTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRK 203 (268)
T ss_pred eeCCCChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHH
Confidence 2 2466776666654 256677776665545677888887774
No 141
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=28.56 E-value=3e+02 Score=21.82 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=31.9
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCC-----chhhHHhHHHHhhhcCCCEEEeC
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVD-----PVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~Dvd-----P~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.|.+..+..+++|.+..||+ .+.| +.++.. +..+|..+||.++++.
T Consensus 52 p~l~~ll~~~~~g~~~~ivv-~~~~Rl~R~~~~~~~-~~~~l~~~gi~l~~~~ 102 (148)
T smart00857 52 PGLQRLLADLRAGDIDVLVV-YKLDRLGRSLRDLLA-LLELLEKKGVRLVSVT 102 (148)
T ss_pred HHHHHHHHHHHcCCCCEEEE-eccchhhCcHHHHHH-HHHHHHHCCCEEEECc
Confidence 46788888888888765544 4444 345444 5568899999887765
No 142
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=28.41 E-value=1.6e+02 Score=26.61 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=42.6
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchh---hHHhHHHHhhhcCCCEEEeCCcchhhhhhc
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVE---LVVWLPALCRKMEIPYCIVKGKARLGVIVH 188 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~e---lv~~LpaLC~~~~VPy~~v~sK~~LG~avG 188 (259)
.+.|+.+++.|-.-+.+-..|.+..+ ....+..+|+++++|++ +.+..+|-..++
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~li-INd~~dlA~~~~ 81 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLI-INDRVDLALAVG 81 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEE-ecCcHHHHHhCC
Confidence 68899999999777777788887754 45578999999999995 567777765555
No 143
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=28.27 E-value=1.3e+02 Score=29.62 Aligned_cols=23 Identities=9% Similarity=0.326 Sum_probs=19.4
Q ss_pred hHHHHHHHHhcCccEEEEeCCCC
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvd 155 (259)
.++++..+...++.+||||+|+-
T Consensus 31 f~eil~~a~~~~vD~VLiaGDLF 53 (405)
T TIGR00583 31 FEEVLQIAKEQDVDMILLGGDLF 53 (405)
T ss_pred HHHHHHHHHHcCCCEEEECCccC
Confidence 46777788888899999999983
No 144
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.17 E-value=1.6e+02 Score=26.70 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=10.4
Q ss_pred HHHHhhhcCCCEEEeC
Q 024981 163 LPALCRKMEIPYCIVK 178 (259)
Q Consensus 163 LpaLC~~~~VPy~~v~ 178 (259)
|...+++.+|+|+++.
T Consensus 198 l~~~ik~~~v~~if~e 213 (264)
T cd01020 198 FQNAIKNRQIDALIVN 213 (264)
T ss_pred HHHHHHhCCCCEEEeC
Confidence 5666666777776644
No 145
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=28.15 E-value=59 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=27.7
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
...+||.|.|- + +...++-.+|.++++|++....-
T Consensus 111 ~~DvVi~~~d~-~-~~r~~l~~~~~~~~ip~i~~g~~ 145 (228)
T cd00757 111 GYDLVLDCTDN-F-ATRYLINDACVKLGKPLVSGAVL 145 (228)
T ss_pred CCCEEEEcCCC-H-HHHHHHHHHHHHcCCCEEEEEec
Confidence 48899999984 4 34466899999999999987643
No 146
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=27.73 E-value=3.3e+02 Score=28.95 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=52.6
Q ss_pred chHHH-HHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc-------------hhhhhhcCCCeEEEEE
Q 024981 132 GLNHV-TYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA-------------RLGVIVHKKTASVLCL 197 (259)
Q Consensus 132 G~n~V-tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~-------------~LG~avGkk~~a~Vai 197 (259)
..+.| .+.+.++++.+||---|++-.|.-..|.----++|+|++.+-++. +|.+.+|.+....+|.
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAK 147 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEee
Confidence 33443 456788999999999999988877777777788999988776654 4667777777777777
Q ss_pred eecC
Q 024981 198 TTVK 201 (259)
Q Consensus 198 td~g 201 (259)
...|
T Consensus 148 ~g~G 151 (653)
T COG0370 148 RGEG 151 (653)
T ss_pred cCCC
Confidence 7666
No 147
>PLN02976 amine oxidase
Probab=27.55 E-value=30 Score=40.00 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.6
Q ss_pred ccccCC
Q 024981 25 LFEKRP 30 (259)
Q Consensus 25 l~e~rp 30 (259)
+||+++
T Consensus 721 VlEa~~ 726 (1713)
T PLN02976 721 VLEARS 726 (1713)
T ss_pred EEeecc
Confidence 344443
No 148
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=27.24 E-value=3.6e+02 Score=22.33 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=63.8
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhc----------CCCeEEEEEeecCc
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH----------KKTASVLCLTTVKN 202 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avG----------kk~~a~Vaitd~g~ 202 (259)
++++...+++-..-+|+=-.+++..++.. |..-++..|+-+..+++.- +..|+. ....++++|++.
T Consensus 9 v~~l~~~l~~~~~v~v~~~~gl~~~~~~~-lR~~lr~~~~~~~V~KNtL-~~~Al~~t~~~~l~~~l~G~~al~f~~~-- 84 (157)
T cd05797 9 VAELKEKLKEAKSVVVADYRGLTVAQLTE-LRKELREAGVKLKVVKNTL-AKRALEGTGFEDLDDLLKGPTAIAFSEE-- 84 (157)
T ss_pred HHHHHHHHHhCCEEEEEecCCCcHHHHHH-HHHHHHHcCCEEEEehhHH-HHHHHhcCCchhhHhhCcCCEEEEEeCC--
Confidence 45666677777766677677777766644 8888888888776665422 222222 123567777644
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHHHHHH
Q 024981 203 EDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAK 246 (259)
Q Consensus 203 eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~~~k~ 246 (259)
|..+..+++..+...+. ...=..--.+|.+++...+..++++
T Consensus 85 -d~~~~~k~l~~f~k~~~-~~~~~gg~~eg~~l~~~~v~~la~L 126 (157)
T cd05797 85 -DPVAAAKVLKDFAKENK-KLEIKGGVVEGKVLDAEEVKALAKL 126 (157)
T ss_pred -ChHHHHHHHHHHHHhCC-CcEEEEEEECCEecCHHHHHHHhcC
Confidence 55566676665544332 2222223345667777666666654
No 149
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=27.20 E-value=89 Score=25.10 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=25.1
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEE
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~ 175 (259)
.+.+....++.++.||||..+. | ++.=+-+.+++.|||++
T Consensus 51 ~~~l~~~a~~~~idlvvvGPE~-p--L~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGPEA-P--LVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHHHHHHTTESEEEESSHH-H--HHTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHHcCCCEEEECChH-H--HHHHHHHHHHHCCCcEE
Confidence 4566666677777777777654 2 44456667777777763
No 150
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.17 E-value=3e+02 Score=25.49 Aligned_cols=54 Identities=17% Similarity=0.096 Sum_probs=34.9
Q ss_pred cCCcccHHHHHHHHHHHHHHHHcCCC-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCch
Q 024981 95 KYRPEDRAAKKERLLKKAQAEAEGKT-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPV 157 (259)
Q Consensus 95 kyrPE~k~eK~~rLl~~A~k~aaGk~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~ 157 (259)
=|+|.. .....+++...+.. .|.. ++.. ..|...+.+++++|. .|.|..|-++.
T Consensus 162 vyr~~~-n~~~d~~i~~~R~~-~g~~~i~~~-----~~~~r~l~r~Lk~g~--~v~il~DQ~~~ 216 (308)
T PRK06553 162 LFRPPN-NPYAARKVLEARRT-TMGGLVPSG-----AGAAFALAGVLERGG--HVGMLVDQKFT 216 (308)
T ss_pred EEecCC-ChHHHHHHHHHHHH-cCCCcccCC-----ChHHHHHHHHHHcCC--eEEEEecccCC
Confidence 467763 45566776665542 4432 2211 146889999999885 88889888763
No 151
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=27.12 E-value=1.1e+02 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.259 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCccEEEEeC-CCCchhhHHhHHHHhhhc
Q 024981 134 NHVTYLIEQNKAQLVVIAH-DVDPVELVVWLPALCRKM 170 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~-DvdP~elv~~LpaLC~~~ 170 (259)
+...+.|++.+..+|+|+. ..+-..+...+..+-++.
T Consensus 53 ~~l~~~i~~~kP~vI~v~g~~~~s~~l~~~v~~~v~~~ 90 (150)
T PF14639_consen 53 ERLKKFIEKHKPDVIAVGGNSRESRKLYDDVRDIVEEL 90 (150)
T ss_dssp HHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEEcCCChhHHHHHHHHHHHHHHh
Confidence 5566788889999999944 333345555566665554
No 152
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=26.85 E-value=54 Score=25.81 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCccEEEEeCCCCc---hhhHHhHHHHhhhcCCCEE
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDP---VELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP---~elv~~LpaLC~~~~VPy~ 175 (259)
..+..+|++++..+||-..+-+. .+---.+...|-+++|||+
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 67999999999999988544222 1111347888999999996
No 153
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.69 E-value=1.8e+02 Score=23.65 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=34.0
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCCc-----hhhHHhHHHHhhhcCCCEEEeCC
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVDP-----VELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvdP-----~elv~~LpaLC~~~~VPy~~v~s 179 (259)
-|.+..++.++.|++..||+ .+.|- .+....+..++..+||.++++..
T Consensus 55 p~l~~ll~~~~~g~vd~vvv-~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~~ 107 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIV-KDMSRLGRNYLKVGLYMEILFPKKGVRFIAIND 107 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEE-eccchhccCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 47899999999999887665 44543 24445556666667999988763
No 154
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.64 E-value=4.1e+02 Score=23.21 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=27.7
Q ss_pred EEeCCCCchh-hHHhHHHHhhhcC-CCEEEeCCcchhhhhhcCCCeEEEEEeecC
Q 024981 149 VIAHDVDPVE-LVVWLPALCRKME-IPYCIVKGKARLGVIVHKKTASVLCLTTVK 201 (259)
Q Consensus 149 VIA~DvdP~e-lv~~LpaLC~~~~-VPy~~v~sK~~LG~avGkk~~a~Vaitd~g 201 (259)
+-|..|.|=. +-.+|..|+.++. |-++.+... ....-.+.+.+-++.|...|
T Consensus 109 Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad-~~~~~~~i~~lPTlliyk~G 162 (192)
T cd02988 109 LYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST-QCIPNYPDKNLPTILVYRNG 162 (192)
T ss_pred EECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH-HhHhhCCCCCCCEEEEEECC
Confidence 3455565532 3356888999874 555554432 22344455554445555444
No 155
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=26.47 E-value=3.3e+02 Score=27.68 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=55.5
Q ss_pred cchHHHHHHHHh----------cCccEEEEeCCCCch--hhHHhHHHHhhhcCCCEEEeCCcchhhhhhc-------CCC
Q 024981 131 YGLNHVTYLIEQ----------NKAQLVVIAHDVDPV--ELVVWLPALCRKMEIPYCIVKGKARLGVIVH-------KKT 191 (259)
Q Consensus 131 ~G~n~Vtk~Iek----------kKAkLVVIA~DvdP~--elv~~LpaLC~~~~VPy~~v~sK~~LG~avG-------kk~ 191 (259)
.|+.++...||+ .+|.||+.--|.+.. +....+.. +...+.|++.|-+|.+|....- .+
T Consensus 273 AGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~- 350 (454)
T COG0486 273 AGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESEKLANG- 350 (454)
T ss_pred CCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchhhccCC-
Confidence 466666666665 468899998888762 22222233 4677899999999999986322 12
Q ss_pred eEEEEEeecCcccHHHHHHHHHHHHHhhhhh
Q 024981 192 ASVLCLTTVKNEDKMEFSRILEAIKANFNDK 222 (259)
Q Consensus 192 ~a~Vaitd~g~eDk~~l~klve~i~~nynd~ 222 (259)
.+.+.+..... ..++.|-+++...|...
T Consensus 351 ~~~i~iSa~t~---~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 351 DAIISISAKTG---EGLDALREAIKQLFGKG 378 (454)
T ss_pred CceEEEEecCc---cCHHHHHHHHHHHHhhc
Confidence 13344433332 23788888998888654
No 156
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=26.45 E-value=2e+02 Score=24.69 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=32.5
Q ss_pred hHHHHHHHHhc--CccEEEEeCCCCch----hhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 133 LNHVTYLIEQN--KAQLVVIAHDVDPV----ELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 133 ~n~Vtk~Iekk--KAkLVVIA~DvdP~----elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
.+.+...+.+. ++.+||++.|+... +... +-.+-+..++|+..+.+.-+.
T Consensus 27 l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~-~~~~l~~~~~p~~~v~GNHD~ 82 (240)
T cd07402 27 LEAVLAHINALHPRPDLVLVTGDLTDDGSPESYER-LRELLAALPIPVYLLPGNHDD 82 (240)
T ss_pred HHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHH-HHHHHhhcCCCEEEeCCCCCC
Confidence 35566666665 88999999997542 2222 333345568999988876554
No 157
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=26.43 E-value=3.5e+02 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=26.6
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCc
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDP 156 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP 156 (259)
....|..+|..+++-|-+..++|..|.+-
T Consensus 295 la~yG~~~vr~aL~~gaVd~llv~Edl~~ 323 (411)
T COG1503 295 LAVYGEEEVREALEMGAVDTLLVSEDLEK 323 (411)
T ss_pred eeecchHHHHHHHHhcccceEEeeccccc
Confidence 36799999999999999999999999873
No 158
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=26.04 E-value=2e+02 Score=27.63 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=26.7
Q ss_pred cCCC----CCCCCCceEecchHHHHHHHHhcCccEEEEeCCC
Q 024981 117 EGKT----VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDV 154 (259)
Q Consensus 117 aGk~----~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~Dv 154 (259)
+|.+ +|+++|..+ ...+.+..+++.+ .+||++.|.
T Consensus 156 ~g~g~RrvV~SP~P~~i-ve~~aI~~LLe~G--~IvI~~GgG 194 (313)
T PRK12454 156 AGRGWRRVVPSPDPLGI-VEIEVIKALVENG--FIVIASGGG 194 (313)
T ss_pred CCCceEEEeCCCCCccc-cCHHHHHHHHHCC--CEEEEeCCC
Confidence 5666 889999876 4667777788887 478888885
No 159
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=25.94 E-value=2e+02 Score=21.75 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC-cchhhhhhcCC------CeEEEEEeecC
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG-KARLGVIVHKK------TASVLCLTTVK 201 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s-K~~LG~avGkk------~~a~Vaitd~g 201 (259)
+......+...+++|.|..|- .+ -+..+++.+++|+-++.+ ..++....|.. ..-++-|+|.+
T Consensus 49 ~~~~~~~~~~~~~vi~is~d~--~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 49 NELYKKYKDKGVQVIGISTDD--PE---EIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPD 118 (124)
T ss_dssp HHHHHHHHTTTEEEEEEESSS--HH---HHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETT
T ss_pred HHHhhhhccceEEeeeccccc--cc---chhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCC
Confidence 334444556677888888864 23 246778888888877664 56888888876 33345555554
No 160
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=25.94 E-value=58 Score=26.05 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
+++..+|.+-+--++|+...+.-......+..|++..|+|++...
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~ 46 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTP 46 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEG
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecC
Confidence 456666666666666666665433345568899999999998654
No 161
>PRK09453 phosphodiesterase; Provisional
Probab=25.92 E-value=1.6e+02 Score=24.79 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCccEEEEeCCCC-------------chhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVD-------------PVELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvd-------------P~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
.+.+...+++..+..||++.|+- |.++. .+.++.++|+..|.+.-+
T Consensus 16 ~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~----~~l~~~~~~v~~V~GNhD 74 (182)
T PRK09453 16 TEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVA----ELLNAYADKIIAVRGNCD 74 (182)
T ss_pred HHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHH----HHHHhcCCceEEEccCCc
Confidence 45566677777888888888873 22222 223455667777776644
No 162
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=25.82 E-value=76 Score=31.52 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=28.7
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV 185 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~ 185 (259)
...+|| +.+.++. ....|-.+|++++||++.+.+..-.|.
T Consensus 112 ~fdiVI-~t~~~~~-~~~~L~~~c~~~~iPlI~~~s~G~~G~ 151 (425)
T cd01493 112 QFTVVI-ATNLPES-TLLRLADVLWSANIPLLYVRSYGLYGY 151 (425)
T ss_pred CCCEEE-ECCCCHH-HHHHHHHHHHHcCCCEEEEecccCEEE
Confidence 345655 4454443 345589999999999999998777774
No 163
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=25.64 E-value=4.1e+02 Score=22.47 Aligned_cols=109 Identities=11% Similarity=0.170 Sum_probs=64.1
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhc----------CCCeEEEEEeecCc
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH----------KKTASVLCLTTVKN 202 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avG----------kk~~a~Vaitd~g~ 202 (259)
++++...+++-+.-+|+=-.+++..++. .|..-++..|+-+..+++. -+..|+. .+..+++++++
T Consensus 10 v~~l~~~l~~~~~v~v~~~~gl~~~~~~-~lR~~lr~~~~~~~V~KNt-L~~~Al~~~~~~~l~~~l~G~~al~fs~--- 84 (172)
T PRK00099 10 VAELAEKLKKAQSAVVADYRGLTVAQMT-ELRKKLREAGVEYKVVKNT-LARRALEGTGFEGLDDLLKGPTAIAFSY--- 84 (172)
T ss_pred HHHHHHHHHhCCEEEEEecCCCcHHHHH-HHHHHHHHcCCEEEEehhH-HHHHHHhcCCchhhhhhCcCCeEEEEeC---
Confidence 4566667777666666666667666654 4788888888877665543 2333332 12345666764
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHHHHHHH
Q 024981 203 EDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKE 247 (259)
Q Consensus 203 eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~~~k~~ 247 (259)
+|..+..+++..+...+ +...=..--..|.+++...+..++++-
T Consensus 85 ~d~~~~~k~l~~f~K~~-~~~~l~gg~~eg~~l~~~~i~~la~LP 128 (172)
T PRK00099 85 EDPVAAAKVLKDFAKDN-KKLEIKGGAIEGKVLDAEEVKALAKLP 128 (172)
T ss_pred CChHHHHHHHHHHHhhC-cCceEEEEEECCEEcCHHHHHHHhcCC
Confidence 35555666665544332 233322345567788887777777653
No 164
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.63 E-value=2.2e+02 Score=19.28 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
..+...+++..+..-++=-|-++ +....+..+.....+|.++++++
T Consensus 13 ~~~~~~L~~~~i~y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i~g~ 58 (60)
T PF00462_consen 13 KKAKEFLDEKGIPYEEVDVDEDE-EAREELKELSGVRTVPQVFIDGK 58 (60)
T ss_dssp HHHHHHHHHTTBEEEEEEGGGSH-HHHHHHHHHHSSSSSSEEEETTE
T ss_pred HHHHHHHHHcCCeeeEcccccch-hHHHHHHHHcCCCccCEEEECCE
Confidence 45666777777777666665555 45555666666788999998764
No 165
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=25.56 E-value=3.4e+02 Score=27.10 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=26.0
Q ss_pred HHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
.+...+++......+--.|-++ ... -..+...||||+++-+..++
T Consensus 306 ~l~~~Lr~~girv~lD~r~~s~---gkk-~k~Ae~~GvP~~IiIG~~El 350 (472)
T TIGR00408 306 EVRSRLKKAGFRVHIDDRDNRP---GRK-FYQWEIKGIPLRIEVGPNDI 350 (472)
T ss_pred HHHHHHHHCCCEEEEECCCCCH---HHH-HHHHHHCCCCEEEEECcchh
Confidence 3444555554444443333333 232 35678899999987776665
No 166
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=25.52 E-value=1.1e+02 Score=28.72 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=53.1
Q ss_pred CCceEecchHHHHHHHHh---------cCccEEEEeCCCCc------hhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcC
Q 024981 125 KPIVVKYGLNHVTYLIEQ---------NKAQLVVIAHDVDP------VELVVWLPALCRKMEIPYCIVKGKARLGVIVHK 189 (259)
Q Consensus 125 ~p~~l~~G~n~Vtk~Iek---------kKAkLVVIA~DvdP------~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGk 189 (259)
=|++|..+.+.+..++++ +.-.|+|+..|..- -++...+.+.++++|++.++.-+--..|.++..
T Consensus 55 fPPQV~V~dD~~vel~~ne~Y~~k~~~~~~Dliil~Gd~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~vGkl~ee 134 (258)
T COG2047 55 FPPQVLVNDDSTVELMRNEFYYWKSPGGERDLIILVGDTQATSSEGQYELTGKILDIAKEFGARMIYTLGGYGVGKLVEE 134 (258)
T ss_pred CCCeeEecCCceEEeeeceeEEEecCCCCCcEEEEeccccccCcchhHHHHHHHHHHHHHcCCcEEEEecCcccCcccCC
Confidence 466677777777777655 45689999999754 367777889999999999999888888888887
Q ss_pred CC
Q 024981 190 KT 191 (259)
Q Consensus 190 k~ 191 (259)
.+
T Consensus 135 p~ 136 (258)
T COG2047 135 PR 136 (258)
T ss_pred ce
Confidence 75
No 167
>PRK03980 flap endonuclease-1; Provisional
Probab=25.16 E-value=1.2e+02 Score=28.54 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=28.1
Q ss_pred eCCCCchhhHHhHHHHhhhcCCCEEEeCCc--chhhhhhcCC
Q 024981 151 AHDVDPVELVVWLPALCRKMEIPYCIVKGK--ARLGVIVHKK 190 (259)
Q Consensus 151 A~DvdP~elv~~LpaLC~~~~VPy~~v~sK--~~LG~avGkk 190 (259)
+.++++ +.+..+..+++.+||||+...+- ++++.++...
T Consensus 77 ~~~vt~-~~~~~~k~lL~~~GIp~i~AP~EAEAq~A~L~~~g 117 (292)
T PRK03980 77 SSRLTD-EIVEDSKKLLDLMGIPYVQAPSEGEAQAAYMAKKG 117 (292)
T ss_pred cccCCH-HHHHHHHHHHHHCCCCEEecCchHHHHHHHHHHCC
Confidence 345555 45666888999999999998875 4677777443
No 168
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=25.01 E-value=1.9e+02 Score=23.74 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=33.6
Q ss_pred EEEEeCCC--CchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 147 LVVIAHDV--DPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 147 LVVIA~Dv--dP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.|||+.|. +|.+++.++- ..+.|+.+ + . ||-+..=.|+ .+...++++.+|..+
T Consensus 1 ~ivl~~~~~v~Ps~l~~~~~----~~~~~v~i-K-----------E--TCFG~~i~Ge--~e~V~~~i~~iR~ld 55 (104)
T PF09875_consen 1 YIVLSSEANVSPSDLAMKLY----ELSLPVTI-K-----------E--TCFGAMIEGE--EEEVDKVIEEIRKLD 55 (104)
T ss_pred CEEeCCCCCcCHHHHHHHHH----hcCCCcee-e-----------e--cceeeEEECC--HHHHHHHHHHHHhhC
Confidence 37888885 8988877543 22344322 2 1 5666655664 345789999999854
No 169
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.92 E-value=2.3e+02 Score=22.00 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=31.3
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCE
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPY 174 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy 174 (259)
...|..+.+..++.....++++.++.+... .. +....+.+|++.
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~-~~-~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRSR-EE-YAKKLKKLGIPV 58 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-H-HH-HHHHHHHTTTT-
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCCH-HH-HHHHHHhcCcCC
Confidence 568999999999999999999999976532 22 233337899986
No 170
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=24.90 E-value=1.6e+02 Score=24.01 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=28.9
Q ss_pred HHHhcCccEEEEeCCCCchh---hHHhHHHHhhhcCCCEEEeCCcch
Q 024981 139 LIEQNKAQLVVIAHDVDPVE---LVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 139 ~IekkKAkLVVIA~DvdP~e---lv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
.++..++.+||++.|+.... -...+ ......++|++++.+.-+
T Consensus 18 ~~~~~~~D~vv~~GDl~~~~~~~~~~~~-~~l~~~~~p~~~v~GNHD 63 (188)
T cd07392 18 ILKAEEADAVIVAGDITNFGGKEAAVEI-NLLLAIGVPVLAVPGNCD 63 (188)
T ss_pred HhhccCCCEEEECCCccCcCCHHHHHHH-HHHHhcCCCEEEEcCCCC
Confidence 45667789999999985421 12223 455667899998887654
No 171
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=24.48 E-value=1.9e+02 Score=22.83 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=33.1
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCch----h---hHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPV----E---LVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~----e---lv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
.+.+...++..++.+||++.|+... + ...++..++... +|+..+.+.=+.
T Consensus 24 l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~ 80 (144)
T cd07400 24 LDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV 80 (144)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE
Confidence 3456667778889999999998553 2 223344444332 689888877765
No 172
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=24.41 E-value=1.5e+02 Score=27.27 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=33.7
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcC
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHK 189 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGk 189 (259)
+.-...||..|-.-+.-+..+..+++.+|+|+..+.+..+|..++..
T Consensus 223 g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 223 GNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred CCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 44678888887544444566788899999999877776677666654
No 173
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.28 E-value=1.8e+02 Score=27.32 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=34.4
Q ss_pred CCCceEecchH----HHHHHHHhcC--ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 124 KKPIVVKYGLN----HVTYLIEQNK--AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 124 ~~p~~l~~G~n----~Vtk~IekkK--AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.|-.+++||.- ....+++.|. +.++++-+|-.. +..+|+++|||++.+.
T Consensus 94 ~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~------~~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPD------LQPLAVQHDIPFHHLP 148 (289)
T ss_pred eEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChh------HHHHHHHcCCCEEEeC
Confidence 34567788864 4455556664 788888888632 2488999999998765
No 174
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.22 E-value=3.7e+02 Score=23.23 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc----------chhhhhhcCC
Q 024981 137 TYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK----------ARLGVIVHKK 190 (259)
Q Consensus 137 tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK----------~~LG~avGkk 190 (259)
...|-.=+..|||......+. ..+..|.+..|||++.+... ..||.++|+.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~---~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 127 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPT---SIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGKE 127 (262)
T ss_pred HHHHHhcCCCEEEEecCCccc---hhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCCH
Confidence 445556668888876544331 12345566689998877653 2577777764
No 175
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=24.12 E-value=4.9e+02 Score=24.19 Aligned_cols=101 Identities=12% Similarity=0.175 Sum_probs=53.2
Q ss_pred HHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh---cCCCEEEeCC-cchhhhhhcCC------CeEEEEEeec-----
Q 024981 136 VTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK---MEIPYCIVKG-KARLGVIVHKK------TASVLCLTTV----- 200 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~---~~VPy~~v~s-K~~LG~avGkk------~~a~Vaitd~----- 200 (259)
.....++..+.++-|+.|- +.....|.....++ .+++|-++.+ ..+++++.|.- .++++ |+|.
T Consensus 124 ~~~ef~~~gv~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tF-IID~dG~I~ 201 (261)
T PTZ00137 124 RLKEFEERGVKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASV-LVDKAGVVK 201 (261)
T ss_pred HHHHHHHCCCEEEEEECCC-HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEE-EECCCCEEE
Confidence 3444555667788887775 32322332222232 5677765554 45677777752 23333 3331
Q ss_pred ----Cc-ccHHHHHHHHHHHH-Hhhhhhhhhhh-hcc--CCCCCCch
Q 024981 201 ----KN-EDKMEFSRILEAIK-ANFNDKYDEHR-KKW--GGGIMGSK 238 (259)
Q Consensus 201 ----g~-eDk~~l~klve~i~-~nynd~y~e~~-~~w--gg~~lg~k 238 (259)
.+ .-....+++++.+. -.|+|++.+.| -.| |..+|-+-
T Consensus 202 ~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~~cPanW~~g~~~~~~~ 248 (261)
T PTZ00137 202 HVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPD 248 (261)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhchhhhcCCCcCCCCCcCCceecCC
Confidence 11 00113566666553 34677787777 678 66666553
No 176
>PTZ00030 60S ribosomal protein L20; Provisional
Probab=24.07 E-value=5.8 Score=33.11 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=40.6
Q ss_pred hHHhHHHHhhhcCCCEE-EeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 159 LVVWLPALCRKMEIPYC-IVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 159 lv~~LpaLC~~~~VPy~-~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
++..|-+.|+++|++|- ++.+-..-|-.+.++..+-+||.|+ ..|..||+.++.
T Consensus 52 WI~RINAa~R~~g~~Ys~fi~~L~k~~i~LNRK~Ls~LAi~dp-----~sF~~lv~~~k~ 106 (121)
T PTZ00030 52 WIQTINAATREHNMTYSRFINGLNNSNIQLNRKILANLAITEP-----FSFKALVDESKY 106 (121)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcHHHHHHHHhcCH-----HHHHHHHHHHHH
Confidence 34568899999999985 4555555566777787777787655 479999999885
No 177
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=23.91 E-value=1.8e+02 Score=22.41 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=23.9
Q ss_pred ccEEEEeCCCCc--hhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 145 AQLVVIAHDVDP--VELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 145 AkLVVIA~DvdP--~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+.++|+.-|++. ......+...+...++|++++.+|.++
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECccc
Confidence 455566555542 122223455566778999999988765
No 178
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=23.88 E-value=2.8e+02 Score=26.13 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=56.5
Q ss_pred cCCC-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEE
Q 024981 117 EGKT-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVL 195 (259)
Q Consensus 117 aGk~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~V 195 (259)
.|-. +.+.=|.+ ..-.+.+.+.-++| -.|||..|-+..|+.- +...|. +=.++++.+.+++..+-..... -+
T Consensus 85 ~g~~viDaTCP~V-~k~~~~v~~~~~~G--y~iviiG~~~HpEv~g-i~g~~~--~~~~~vv~~~~~~~~l~~~~~~-kv 157 (281)
T PF02401_consen 85 RGLEVIDATCPFV-KKIHKIVRKYAKEG--YQIVIIGDKNHPEVIG-ILGYAP--EEKAIVVESPEDVEKLPISDPK-KV 157 (281)
T ss_dssp TTEEEEE---HHH-HHHHHHHHHHHHCT---EEEEES-TT-HHHHH-HHCCHH--TS-EEEESSHHHHHHGGGSSTT-CE
T ss_pred cCCEEEECCChhH-HHHHHHHHHHHhcC--CEEEEECCCCCceEEE-eccccc--CCceEEeCChhhhcccCCCCCC-eE
Confidence 4544 44555542 22334444443444 4777888888878755 566665 2357788999999877544311 13
Q ss_pred EEeecCcccHHHHHHHHHHHHHhhhhhh
Q 024981 196 CLTTVKNEDKMEFSRILEAIKANFNDKY 223 (259)
Q Consensus 196 aitd~g~eDk~~l~klve~i~~nynd~y 223 (259)
+++..-.-+...|.++++.++..|.+..
T Consensus 158 ~vvsQTT~~~~~~~~i~~~l~~~~~~~~ 185 (281)
T PF02401_consen 158 AVVSQTTQSVEKFEEIVEALKKRFPELE 185 (281)
T ss_dssp EEEE-TTS-HHHHHHHHHHHHHHSTCEE
T ss_pred EEEEeecccHHHHHHHHHHHHHhCcccc
Confidence 3333444567789999999999887653
No 179
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.74 E-value=1.1e+02 Score=28.68 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=32.7
Q ss_pred CCceEecchHHHHHHH----Hhc--CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 125 KPIVVKYGLNHVTYLI----EQN--KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 125 ~p~~l~~G~n~Vtk~I----ekk--KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
|-.++.||.-+...+| +.| .+.++++-+|-+. +..+|+++|||++.+..
T Consensus 91 ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~------~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 91 RVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDD------LRSLVERFGIPFHHVPV 145 (286)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChh------HHHHHHHhCCCEEEecc
Confidence 4456777765555544 455 3677777777532 35679999999988543
No 180
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=23.63 E-value=1.8e+02 Score=30.45 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=65.9
Q ss_pred hhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCe-EEEEEeecCc-ccHHHHHHHHHHHHHh-------------hhhh
Q 024981 158 ELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTA-SVLCLTTVKN-EDKMEFSRILEAIKAN-------------FNDK 222 (259)
Q Consensus 158 elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~-a~Vaitd~g~-eDk~~l~klve~i~~n-------------ynd~ 222 (259)
|+...+..-|++|||+.+-|.|-.+=- .+|-+-+ -+++|-.... ..--..+++++++... =|-.
T Consensus 8 EIAcRVirTakkmGI~tVAV~Sd~D~~-SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~ 86 (670)
T KOG0238|consen 8 EIACRVIRTAKKMGIRTVAVYSDADRN-SLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAE 86 (670)
T ss_pred ceeehhhhHHHHhCCeEEEEEccCccc-cceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccchH
Confidence 556667888999999999877654422 3444421 1222211111 1112357788777631 2556
Q ss_pred hhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcC
Q 024981 223 YDEHRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS 259 (259)
Q Consensus 223 y~e~~~~wgg~~lg~ks~~~~~k~~k~~~~e~~~k~~ 259 (259)
|.|.|..-|=..+||.+.+-...=.|..+++++++.|
T Consensus 87 Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~Ag 123 (670)
T KOG0238|consen 87 FAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAG 123 (670)
T ss_pred HHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcC
Confidence 8889999999999999988888778888888877654
No 181
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=23.62 E-value=3.8e+02 Score=26.74 Aligned_cols=21 Identities=19% Similarity=0.081 Sum_probs=16.1
Q ss_pred HHHhhhcCCCEEEeCCcchhh
Q 024981 164 PALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 164 paLC~~~~VPy~~v~sK~~LG 184 (259)
-.-+...||||+++-+..+|.
T Consensus 337 ~~~ae~~GvP~~IiIG~~ele 357 (477)
T PRK08661 337 FNEWELKGVPLRIEIGPRDLE 357 (477)
T ss_pred HHHHHHCCCCEEEEECcchhh
Confidence 356889999999877766653
No 182
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=23.50 E-value=1.4e+02 Score=23.01 Aligned_cols=42 Identities=24% Similarity=0.090 Sum_probs=27.5
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV 185 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~ 185 (259)
.+.++|+..|++..+-......+....++|++++.+|.++..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLP 121 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCC
Confidence 456777777777322222233444467899999999998864
No 183
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=23.50 E-value=4e+02 Score=21.60 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 137 TYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 137 tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
......|..+.|+=+.| +.++.. |...++..|||++.+.+--+-- +--.+.||+|+ |+-....++++.
T Consensus 40 ~~W~~~G~~Kvvlkv~~--~~el~~-l~~~a~~~~l~~~~v~DAG~Te--i~~gs~Tvlai---gP~~~~~i~~it 107 (113)
T PRK04322 40 EEWLNEGQKKVVLKVNS--EEELLE-LKEKAERLGLPTALIRDAGLTQ--LPPGTVTALGI---GPAPEEKIDKIT 107 (113)
T ss_pred HHHHHCCCcEEEEeCCC--HHHHHH-HHHHHHHcCCCEEEEEeCCCcc--cCCCCcEEEEe---CCCCHHHHHHhh
Confidence 33445666777766665 445544 7888999999999886622111 11123578886 343444444443
No 184
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=23.48 E-value=3.6e+02 Score=22.16 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=34.8
Q ss_pred hcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHH
Q 024981 142 QNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRI 211 (259)
Q Consensus 142 kkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~kl 211 (259)
.|..+.|+=+.|- .++.. |-..++..|||+..+ -+ +--.+.||+|+ |+..+...+++
T Consensus 53 ~g~~KVVLkv~~e--~eL~~-L~~~a~~~gi~~~l~---te----~p~gt~T~Lai---gP~~~~~id~i 109 (116)
T cd02429 53 DNMHKVVLEVPDE--AALKN-LSSKLTENSIKHKLW---IE----QPENIPTCIAL---KPYPKETVASY 109 (116)
T ss_pred CCCceEEEEeCCH--HHHHH-HHHHHHHcCCCeEEE---EE----cCCCCceEEEe---CCCCHHHHHHH
Confidence 4556677766664 35544 788999999999875 11 11234688887 34444444444
No 185
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=23.33 E-value=1.4e+02 Score=28.61 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCCCCceEecchHHHHHHHHhcCccEEEEeCC
Q 024981 121 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHD 153 (259)
Q Consensus 121 ~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~D 153 (259)
+|+++|..+ ...+.+..+++++- ++|++.|
T Consensus 160 V~SP~P~~i-v~~~~I~~Ll~~g~--IpI~~Gg 189 (308)
T cd04235 160 VPSPKPKDI-VEIEAIKTLVDNGV--IVIAAGG 189 (308)
T ss_pred eCCCCCccc-cCHHHHHHHHHCCC--EEEEECC
Confidence 789999876 45677777889885 5777777
No 186
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=23.29 E-value=1.9e+02 Score=28.26 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=13.1
Q ss_pred HHHHHHHhcCccEEEEeCCCC
Q 024981 135 HVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~Dvd 155 (259)
.+...+...++.+||||.|+-
T Consensus 30 ~l~~~i~~~~~D~viIaGDif 50 (407)
T PRK10966 30 WLLEQVQEHQVDAIIVAGDIF 50 (407)
T ss_pred HHHHHHHhcCCCEEEECCccc
Confidence 444555556677777777764
No 187
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=23.07 E-value=1.1e+02 Score=28.99 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 136 VTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
+..++ +...+||.+.|--...+..++-+.|.++++|+++
T Consensus 145 ~~~li--~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~ 183 (318)
T TIGR03603 145 LKDLL--KDYNYIIICTEHSNISLLRGLNKLSKETKKPNTI 183 (318)
T ss_pred HHHHh--CCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEE
Confidence 34444 3478999999987666666788999999999985
No 188
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=23.06 E-value=2.3e+02 Score=25.49 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=31.9
Q ss_pred hHHHHHHHHhc--CccEEEEeCCCCch---hhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 133 LNHVTYLIEQN--KAQLVVIAHDVDPV---ELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 133 ~n~Vtk~Iekk--KAkLVVIA~DvdP~---elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
.+.++..|.+. ++.+||++.|+... +-...+.......++|++.+.+.=+
T Consensus 42 l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~GNHD 96 (275)
T PRK11148 42 YQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLPGNHD 96 (275)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeCCCCC
Confidence 34455555443 58899999998642 1223345566777899988877643
No 189
>TIGR00543 isochor_syn isochorismate synthases. This enzyme interconverts chorismate and isochorismate. In E. coli, different loci encode isochorismate synthases for the pathways of menaquinone biosynthesis and enterobactin biosynthesis (via salicilate) and fail to complement each other. Among isochorismate synthases, the N-terminal domain is poorly conserved.
Probab=22.72 E-value=2.5e+02 Score=26.99 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=55.9
Q ss_pred cchHHHHHHHHhcCccEEEEeCCC-----CchhhHHhHHHHhhhcCCCEEEeCCc----chhh----hhhcCC--C--eE
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDV-----DPVELVVWLPALCRKMEIPYCIVKGK----ARLG----VIVHKK--T--AS 193 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~Dv-----dP~elv~~LpaLC~~~~VPy~~v~sK----~~LG----~avGkk--~--~a 193 (259)
..++.+...|+.|...=||+|... ++.+....+..|...+.-+|.+...- .=+| +++.+. + ..
T Consensus 94 ~~v~~a~~~I~~G~l~KvVLar~~~~~~~~~~~~~~~l~~L~~~~p~~y~f~~~~~~~~~fiGaSPE~L~~~~~~~l~t~ 173 (351)
T TIGR00543 94 TAVEEALENIRQGPLDKVVLARALTLKFADDIDPIAVLANLRQQYPNAYIFLLEPPQGGVFLGATPERLLSREKGELLTE 173 (351)
T ss_pred HHHHHHHHHHHcCCccEEEcccEEEEecCCCCCHHHHHHHHHHhCCcCEEEEEEcCCCCEEEeCChhHheEEeCCEEEEE
Confidence 347888889999998888888632 24455666889999988888875432 2222 112111 1 34
Q ss_pred EEEEeecCcccHHHHHHHHHHHHHhhhhhhh
Q 024981 194 VLCLTTVKNEDKMEFSRILEAIKANFNDKYD 224 (259)
Q Consensus 194 ~Vaitd~g~eDk~~l~klve~i~~nynd~y~ 224 (259)
++|-|-...+|...-..+.+.+..+-.|+.|
T Consensus 174 ~lAGT~~r~~~~~ed~~~~~~Ll~s~Ke~~E 204 (351)
T TIGR00543 174 ALAGTAPRSADPEEDRKLGELLLKDDKNLRE 204 (351)
T ss_pred eecCCCCCCCChHHHHHHHHHHhcChHHHHH
Confidence 6666666655554444444444444444443
No 190
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.71 E-value=3.2e+02 Score=23.19 Aligned_cols=66 Identities=14% Similarity=0.032 Sum_probs=38.4
Q ss_pred CCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh----hhcCCC-eEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 152 HDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV----IVHKKT-ASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 152 ~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~----avGkk~-~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
+.++..++...+-..|...+.++.++++.++... .+.... -..|+-...+.-|..+.+.+++.|+.
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA 99 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH
Confidence 5566667766677777777778877777776544 222221 12233334443355566777777764
No 191
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.61 E-value=2e+02 Score=30.97 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=44.1
Q ss_pred hcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCc
Q 024981 142 QNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 142 kkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~ 202 (259)
.|+-++.+|+.|..-+.-...+..+++.+|||+..+.+..+|-.++..-.-.-+.|+|--.
T Consensus 213 ~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDTAG 273 (767)
T PRK14723 213 EGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDTVG 273 (767)
T ss_pred cCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3445788999998776677789999999999998888888877766533211344555543
No 192
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.55 E-value=2.9e+02 Score=25.26 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=56.8
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE-eC--C-cchhhhhhcCCC--eEEE---EEeec
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI-VK--G-KARLGVIVHKKT--ASVL---CLTTV 200 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~-v~--s-K~~LG~avGkk~--~a~V---aitd~ 200 (259)
..|+..-.....+--+.- ||.+|..+.+ ...+...|+++|+..+. +. + -+++-..+.... .-+| ++|..
T Consensus 101 ~~G~e~f~~~~~~aGvdg-viipDlp~ee-~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~ 178 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDG-VLVADLPLEE-SGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGA 178 (256)
T ss_pred hhhHHHHHHHHHHcCCCE-EEECCCChHH-HHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence 346555444444433444 4667886544 45688999999987663 22 2 345555554432 1122 33333
Q ss_pred CcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHH
Q 024981 201 KNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAK 242 (259)
Q Consensus 201 g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~ 242 (259)
.......+.+.++.++...+. .--.||||-.+..+..
T Consensus 179 ~~~~~~~~~~~i~~lr~~~~~-----pi~vgfGI~~~e~~~~ 215 (256)
T TIGR00262 179 RNRAASALNELVKRLKAYSAK-----PVLVGFGISKPEQVKQ 215 (256)
T ss_pred cccCChhHHHHHHHHHhhcCC-----CEEEeCCCCCHHHHHH
Confidence 222334567778888875432 2234777655544444
No 193
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.37 E-value=51 Score=27.70 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhc-CCCEEEeCCcchh
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKM-EIPYCIVKGKARL 183 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~-~VPy~~v~sK~~L 183 (259)
.|+...++.=+=..|.+||||.|++. + +.++. |-|++.+....-|
T Consensus 43 ~G~eN~LT~edI~~Ad~VI~AaD~~i-~-------~~~ff~gk~vi~~~~~~ai 88 (122)
T COG1445 43 VGIENRLTAEDIAAADVVILAADIEV-D-------LSRFFAGKPVIEVSTKDAI 88 (122)
T ss_pred ccccCcCCHHHHHhCCEEEEEecccc-c-------HhHhhcCCeEEEecHHHHH
Confidence 57777777777788999999999854 2 23455 8899888765543
No 194
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=22.30 E-value=2.3e+02 Score=26.99 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=59.7
Q ss_pred cCCC-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhh--cCCCeE
Q 024981 117 EGKT-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIV--HKKTAS 193 (259)
Q Consensus 117 aGk~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~av--Gkk~~a 193 (259)
.|-. +.+.=|.+ ..--+.+.++.++| --|||..|-+..|+.- +...|.. +.+.+.+.+++-.+. ..+.
T Consensus 87 ~g~~viDaTCP~V-~k~~~~v~~~~~~G--y~vvi~G~~~HpEv~g-i~g~~~~---~~~vv~~~~e~~~l~~~~~~~-- 157 (298)
T PRK01045 87 RGLTVIDATCPLV-TKVHKEVARMSREG--YEIILIGHKGHPEVEG-TMGQAPG---GVYLVESPEDVAKLEVKDPDK-- 157 (298)
T ss_pred CCCeEEeCCCccc-hHHHHHHHHHHhCC--CEEEEEeCCCCCeeee-eccCcCC---CEEEEcCHHHHhhcccCCCCc--
Confidence 4555 56677753 34445555555544 3677788888878755 4555532 356789999988762 2222
Q ss_pred EEEEeecCcccHHHHHHHHHHHHHhhhh
Q 024981 194 VLCLTTVKNEDKMEFSRILEAIKANFND 221 (259)
Q Consensus 194 ~Vaitd~g~eDk~~l~klve~i~~nynd 221 (259)
++++..-.-+...|.++++.++..|.+
T Consensus 158 -v~vvsQTT~~~~~~~~i~~~l~~~~~~ 184 (298)
T PRK01045 158 -LALVTQTTLSVDDTAEIIAALKERFPE 184 (298)
T ss_pred -EEEEEcCCCcHHHHHHHHHHHHHhCcC
Confidence 333444445677899999999987743
No 195
>PHA02546 47 endonuclease subunit; Provisional
Probab=22.25 E-value=2.1e+02 Score=27.09 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=33.0
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCch------hhHHhHHH----HhhhcCCCEEEeCCcch
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPV------ELVVWLPA----LCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~------elv~~Lpa----LC~~~~VPy~~v~sK~~ 182 (259)
++.+...++..++.+||||+|+-.. ....++.. +-...|||++.+.+.=+
T Consensus 28 l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD 87 (340)
T PHA02546 28 IKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVGNHD 87 (340)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCCC
Confidence 5666777788889999999998532 11123322 33456899998766544
No 196
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=22.22 E-value=3.1e+02 Score=26.36 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT 191 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~ 191 (259)
+..++..+++.-++++ -|+|...+...|. .+ |..+-.+..||..++|++.
T Consensus 148 y~~li~~~~~~g~~vi---lD~Sg~~L~~~L~-----~~-P~lIKPN~~EL~~~~g~~~ 197 (310)
T COG1105 148 YAELIRILRQQGAKVI---LDTSGEALLAALE-----AK-PWLIKPNREELEALFGREL 197 (310)
T ss_pred HHHHHHHHHhcCCeEE---EECChHHHHHHHc-----cC-CcEEecCHHHHHHHhCCCC
Confidence 4455555555544433 3666655443332 12 7777778888888888763
No 197
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.20 E-value=1.9e+02 Score=26.55 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.4
Q ss_pred chHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
|.......|+.....+||=|.==-..++....-..|++.||||+.+.-
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 557888899999999998444322246666688999999999986553
No 198
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=22.15 E-value=1.8e+02 Score=27.29 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=49.3
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcC-CCEEEeCCcchhhhhhcCCCeEEEEEeecCcc----cHHHHHHHHHHHH
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKME-IPYCIVKGKARLGVIVHKKTASVLCLTTVKNE----DKMEFSRILEAIK 216 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~-VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~e----Dk~~l~klve~i~ 216 (259)
.++|+.=.+...+ .++-..|+..| -|++.|.+.++++++++. ..-+|+|.+.+-+ |-+.-++|+|.|+
T Consensus 163 VLLIvamLs~~~l-k~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVDlstTskL~E~i~ 235 (289)
T KOG4201|consen 163 VLLIVAMLSDLLL-KELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVDLSTTSKLLEGIP 235 (289)
T ss_pred eehHHHHcChHHH-HHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeechhhHHHHHhhCc
Confidence 3344444444344 56889999988 588999999999999998 5677887665542 4455678888876
No 199
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=21.99 E-value=2.3e+02 Score=23.04 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=31.7
Q ss_pred HHHHHHHHhc-CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 134 NHVTYLIEQN-KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 134 n~Vtk~Iekk-KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
..+.+.++.. .+.+||++.|+.+.+.... .+..+.|+..|.+.-+-
T Consensus 17 ~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~----l~~~~~~~~~V~GN~D~ 63 (158)
T TIGR00040 17 ELPVELFNLESNVDLVIHAGDLTSPFVLKE----FEDLAAKVIAVRGNNDG 63 (158)
T ss_pred HhHHHHHhhccCCCEEEEcCCCCCHHHHHH----HHHhCCceEEEccCCCc
Confidence 4555666665 7999999999965454333 34557788888876663
No 200
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=21.82 E-value=3e+02 Score=27.59 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=56.1
Q ss_pred hhcCCcccHHHHHHHHHHHHHH--HHcCCCCCCCCCceEecchHH----HHHH--HHhcCccEEEEeCCCCchhhHHhHH
Q 024981 93 LLKYRPEDRAAKKERLLKKAQA--EAEGKTVESKKPIVVKYGLNH----VTYL--IEQNKAQLVVIAHDVDPVELVVWLP 164 (259)
Q Consensus 93 ~~kyrPE~k~eK~~rLl~~A~k--~aaGk~~~~~~p~~l~~G~n~----Vtk~--IekkKAkLVVIA~DvdP~elv~~Lp 164 (259)
.+=|.||..|-..+-|...-.- .-.|-++.. ..+--|... +.=+ +.+++..-|+|..++.|.... -+.
T Consensus 97 YtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdvaN---aSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~-v~~ 172 (429)
T PF02347_consen 97 YTPYQPEISQGRLQALFEYQSMICELTGMDVAN---ASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRA-VLR 172 (429)
T ss_dssp -STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE----SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHH-HHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhhCCCccC---CCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHH-HHH
Confidence 4668889888775555442111 114543100 011112211 1112 233444589999999997664 478
Q ss_pred HHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCc
Q 024981 165 ALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 165 aLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~ 202 (259)
..|.-.|+.++.+...+. |..- -...++|.|+.+|.
T Consensus 173 t~a~~~g~~iv~~~~~~~-~~~d-~~~~a~v~vq~Pn~ 208 (429)
T PF02347_consen 173 TYAAPLGIEIVEVPLDED-GTTD-DDDTAAVMVQNPNT 208 (429)
T ss_dssp HHCCHCCEEEEEE-BBTT-CSB--STTEEEEEEESS-T
T ss_pred HhhhhCCeEEEEeccccc-CCcc-ccCeEEEEeecCCC
Confidence 899999999988875543 2222 34578888988886
No 201
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.81 E-value=2.2e+02 Score=26.10 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=36.7
Q ss_pred chHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
+.+.....|+..+..+||=|.==-..++....-..|++.||||+.+.
T Consensus 53 ~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 GAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 44788899999999999855432234666778899999999998655
No 202
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=21.76 E-value=3.9e+02 Score=26.87 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=56.8
Q ss_pred cchHHHHHHH--------HhcCccEEEEeCCCCch--------------h--------------------hHHhHHHHhh
Q 024981 131 YGLNHVTYLI--------EQNKAQLVVIAHDVDPV--------------E--------------------LVVWLPALCR 168 (259)
Q Consensus 131 ~G~n~Vtk~I--------ekkKAkLVVIA~DvdP~--------------e--------------------lv~~LpaLC~ 168 (259)
.|.+.+..++ +++--+|||++.|+..- + -+..|-..-.
T Consensus 208 gG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~ 287 (423)
T smart00187 208 GGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLA 287 (423)
T ss_pred ccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHH
Confidence 5788877776 44556899999998531 0 1344666677
Q ss_pred hcCCCEEEeCCc------chhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhh
Q 024981 169 KMEIPYCIVKGK------ARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFND 221 (259)
Q Consensus 169 ~~~VPy~~v~sK------~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd 221 (259)
+.+|-.+|.=++ ++|...+. -++|++.+.++ +++|+.|++.||.
T Consensus 288 e~nI~~IFAVT~~~~~~Y~~Ls~lip---gs~vg~Ls~DS------sNIv~LI~~aY~~ 337 (423)
T smart00187 288 ENNINPIFAVTKKQVSLYKELSALIP---GSSVGVLSEDS------SNVVELIKDAYNK 337 (423)
T ss_pred hcCceEEEEEcccchhHHHHHHHhcC---cceeeecccCc------chHHHHHHHHHHh
Confidence 888888884333 35677775 36677776554 6999999999985
No 203
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=21.59 E-value=4.4e+02 Score=21.36 Aligned_cols=68 Identities=15% Similarity=0.279 Sum_probs=39.9
Q ss_pred HHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHH
Q 024981 136 VTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRI 211 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~kl 211 (259)
+......|..+.|+-+.|-+ ++. .|-..++..|||++.+-+--. .=+--.+.||+|| ++.+...++++
T Consensus 41 ~~~W~~~g~~KvVl~v~~~~--~l~-~l~~~a~~~gl~~~~v~DAG~--Tqi~~gt~Tvlai---gP~~~~~i~~i 108 (115)
T cd02407 41 LRAWELEGQKKVVLKVPSEE--ELL-ELAKKAKELGLPHSLIQDAGR--TQIPPGTPTVLAI---GPAPKEKVDKV 108 (115)
T ss_pred HHHHHhCCCcEEEEECCCHH--HHH-HHHHHHHHcCCCeEEEEECCC--cccCCCCceEEEE---CCCCHHHHHHH
Confidence 44556667777887777643 443 377888999999988775211 0011134677876 33344344444
No 204
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=21.58 E-value=2.2e+02 Score=26.32 Aligned_cols=16 Identities=31% Similarity=0.187 Sum_probs=10.4
Q ss_pred cCC-CCCCchhHHHHHH
Q 024981 230 WGG-GIMGSKSQAKTKA 245 (259)
Q Consensus 230 wgg-~~lg~ks~~~~~k 245 (259)
..| -=.|++++..+-.
T Consensus 156 ~~g~~hvGS~~vr~~ie 172 (226)
T COG2129 156 PSGYVHVGSKAVRKLIE 172 (226)
T ss_pred CCCccccchHHHHHHHH
Confidence 566 5678888766543
No 205
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=21.52 E-value=1.2e+02 Score=24.45 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=27.1
Q ss_pred CccEEEEeCCCCc----hhhHHhHHHHhhh--cCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDP----VELVVWLPALCRK--MEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP----~elv~~LpaLC~~--~~VPy~~v~sK~~LG 184 (259)
.+..+|+.-|++. .++..++..+-+. .++|++++.+|.+|.
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 3566777777754 2444555555443 379999999998874
No 206
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=21.48 E-value=1.5e+02 Score=24.35 Aligned_cols=46 Identities=28% Similarity=0.198 Sum_probs=32.9
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecC
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVK 201 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g 201 (259)
-||+|..-||.+--.. ....||-|..+ .|+-||-++.-+|++.|.-
T Consensus 28 kvvvats~dpvts~kl------yfscpyeisdg---~g~~~gfkrwwtvalcdef 73 (122)
T PF05325_consen 28 KVVVATSRDPVTSGKL------YFSCPYEISDG---PGRGCGFKRWWTVALCDEF 73 (122)
T ss_pred eEEEEeccCCccccee------eecCccccccC---CCCCccceeEEeeeechhh
Confidence 4678888889765432 23568866554 7888999997788888764
No 207
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=21.47 E-value=2.7e+02 Score=25.18 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=40.3
Q ss_pred EEEeCCCCchhhHHhHHHHhhhcCCC-EEEeCCcc-hhhhhhcCC------CeEEEEEeecCc-ccHHHHHHHHH
Q 024981 148 VVIAHDVDPVELVVWLPALCRKMEIP-YCIVKGKA-RLGVIVHKK------TASVLCLTTVKN-EDKMEFSRILE 213 (259)
Q Consensus 148 VVIA~DvdP~elv~~LpaLC~~~~VP-y~~v~sK~-~LG~avGkk------~~a~Vaitd~g~-eDk~~l~klve 213 (259)
|||+.|-++.+....|..+|...++. |+...+.. .+|.+..+. +.-.|.|+|..- =+.+.+++++.
T Consensus 37 iIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 37 IIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred EEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 44555555656556789999999988 66555433 344333322 345788888875 23345666666
No 208
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=21.45 E-value=1.1e+02 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=27.3
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
..+.+||.|.|-- +...++-.+|+++++|++....
T Consensus 110 ~~~D~Vi~~~d~~--~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 110 NNVDLVLDCTDNF--ATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred hCCCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 3578999998753 3445689999999999988664
No 209
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=21.25 E-value=5.7e+02 Score=24.67 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=39.6
Q ss_pred CceEecc--hHHHHHHHHhcCccEEEEeCCCCchhh--HHhHHHHhhhcCCCEEE
Q 024981 126 PIVVKYG--LNHVTYLIEQNKAQLVVIAHDVDPVEL--VVWLPALCRKMEIPYCI 176 (259)
Q Consensus 126 p~~l~~G--~n~Vtk~IekkKAkLVVIA~DvdP~el--v~~LpaLC~~~~VPy~~ 176 (259)
|..+..| .+.+..+++.-.+.-|+.-.|.+|.+. ...+...|.+.+|++..
T Consensus 76 ~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~ 130 (429)
T TIGR02765 76 DLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIHVEQ 130 (429)
T ss_pred CeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCceEEE
Confidence 5566666 455666778889999999999999866 56677789999999643
No 210
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=21.18 E-value=3.1e+02 Score=19.45 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=30.3
Q ss_pred CccEEEEeCCCC-chhhHHhHHHHhhhcCCCEEEeCCc-chhhhhhcCCCeEEEEEeecC
Q 024981 144 KAQLVVIAHDVD-PVELVVWLPALCRKMEIPYCIVKGK-ARLGVIVHKKTASVLCLTTVK 201 (259)
Q Consensus 144 KAkLVVIA~Dvd-P~elv~~LpaLC~~~~VPy~~v~sK-~~LG~avGkk~~a~Vaitd~g 201 (259)
.+.++.|..|-+ +.+ +..+...++.++.++.+. ..+.+..|....-.+.|.|.+
T Consensus 52 ~~~~~~v~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~ 107 (116)
T cd02966 52 GVEVVGVNVDDDDPAA----VKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRD 107 (116)
T ss_pred CeEEEEEECCCCCHHH----HHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCC
Confidence 344444444443 333 345556666777665543 678888887554445566654
No 211
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=21.06 E-value=2.1e+02 Score=28.93 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCceEecc-----hHHHHHH-------HHhcCcc-EEEEeCCCCchhhHHhHHHHhhhcCCCEEEe
Q 024981 125 KPIVVKYG-----LNHVTYL-------IEQNKAQ-LVVIAHDVDPVELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 125 ~p~~l~~G-----~n~Vtk~-------IekkKAk-LVVIA~DvdP~elv~~LpaLC~~~~VPy~~v 177 (259)
-|.+|+.. ++++.-. ++..... .-||.+.+++......+..+.++.|||+.=+
T Consensus 351 ~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~ 416 (476)
T PRK06278 351 FPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGV 416 (476)
T ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEe
Confidence 46666652 3666543 3333444 3578899987666666677778889999744
No 212
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.92 E-value=1.8e+02 Score=26.76 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=35.6
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.......+....+.+||=|.=--..++-...-..|++.||||+.+.
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 4556688889999999877653344666678899999999998764
No 213
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=20.91 E-value=4.3e+02 Score=24.94 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=51.2
Q ss_pred CCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHH-HHhhhhhhhhhhhccC
Q 024981 153 DVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAI-KANFNDKYDEHRKKWG 231 (259)
Q Consensus 153 DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i-~~nynd~y~e~~~~wg 231 (259)
+.+..+++.|+.-+++-.|+-.+-++|--. |... .-.+-+|...+..|++.+ +..|.+ ++|.+=||
T Consensus 237 ~~~~~~~~~hi~~i~~l~G~dhVgiGsDfd-----g~~~------~~~gl~~~~~~~~l~~~L~~rG~s~--~~i~~i~g 303 (309)
T cd01301 237 DATLDDVVRHIDYIVDLIGIDHVGLGSDFD-----GIGG------TPGGLEDVSDLPNLTAELLERGYSE--EEIEKIAG 303 (309)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEECcccC-----CCCC------CccccCCHHHHHHHHHHHHHcCCCH--HHHHHHHh
Confidence 566778899999999999998887765322 1110 113347788899998777 555887 68999999
Q ss_pred CCCC
Q 024981 232 GGIM 235 (259)
Q Consensus 232 g~~l 235 (259)
||.|
T Consensus 304 ~N~l 307 (309)
T cd01301 304 GNFL 307 (309)
T ss_pred hchh
Confidence 9987
No 214
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=20.74 E-value=1.4e+02 Score=24.54 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=25.9
Q ss_pred cCccEEEEeCCCCc-hhh---HHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 143 NKAQLVVIAHDVDP-VEL---VVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 143 kKAkLVVIA~DvdP-~el---v~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
..+.++++--|++. .+. ..++..+....++|++++.+|.+|.
T Consensus 76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 76 AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 45667777777743 322 1222223233479999999999984
No 215
>COG5482 Uncharacterized conserved protein [Function unknown]
Probab=20.68 E-value=3.2e+02 Score=24.88 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=56.5
Q ss_pred chHHHHHHHHhcC-ccEEEEeCCCCc----hhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHH
Q 024981 132 GLNHVTYLIEQNK-AQLVVIAHDVDP----VELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKM 206 (259)
Q Consensus 132 G~n~Vtk~IekkK-AkLVVIA~DvdP----~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~ 206 (259)
-++-+..++.+.+ +.+|-||.-+|. .+-...+..||+..|+-+..|......| .-+.+++-..--...
T Consensus 51 nleLilQaVdRa~~aDeVwiAar~sakgkgresd~r~r~LcRRLg~G~lgvs~~g~v~-------ilv~~v~PepR~N~k 123 (229)
T COG5482 51 NLELILQAVDRAATADEVWIAARVSAKGKGRESDKRYRDLCRRLGLGMLGVSDVGDVS-------ILVGSVTPEPRTNPK 123 (229)
T ss_pred cHHHHHHHHHHhhhhhhhhhhhccccccccchhHHHHHHHHHHhcCceEEEeecCcee-------EEEeecCCCCccChh
Confidence 4566777776655 889999998875 3445668999999999888776533322 222222222111222
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHHH
Q 024981 207 EFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKT 243 (259)
Q Consensus 207 ~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~~ 243 (259)
.-++|+ +|+.+.-|.-..|--+.+.+
T Consensus 124 rRskl~-----------~EhqrRrgdp~vGGs~r~pi 149 (229)
T COG5482 124 RRSKLM-----------REHQRRRGDPAVGGSTRAPI 149 (229)
T ss_pred HHHHHH-----------HHHHHhcCCCCcCCccccHH
Confidence 334544 35666667666666555554
No 216
>PF00425 Chorismate_bind: chorismate binding enzyme; InterPro: IPR015890 This entry represents the catalytic regions of the chorismate binding enzymes anthranilate synthase, isochorismate synthase, aminodeoxychorismate synthase and para-aminobenzoate synthase. Anthranilate synthase catalyses the reaction: chorismate + l-glutamine = anthranilate + pyruvate + l-glutamate. The enzyme is a tetramer comprising 2 I and 2 II components: this entry is restricted to component I that catalyses the formation of anthranilate using ammonia rather than glutamine, while component II provides glutamine amidotransferase activity IPR006220 from INTERPRO.; PDB: 3GSE_A 3OS6_C 2FN0_B 2FN1_B 1I7S_C 1I7Q_C 3LOG_D 3RV8_D 2G5F_D 3RV9_C ....
Probab=20.61 E-value=5.4e+02 Score=23.29 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=51.7
Q ss_pred chHHHHHHHHhcCccEEEEeCCCC-----chhhHHhHHHHhhhcCCCEEEeCCcchhhhhhc----------CC--C--e
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHDVD-----PVELVVWLPALCRKMEIPYCIVKGKARLGVIVH----------KK--T--A 192 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~Dvd-----P~elv~~LpaLC~~~~VPy~~v~sK~~LG~avG----------kk--~--~ 192 (259)
.++.+...|++|...-||+|.... +.+....+..|++.+.-+|+++.+-. .++| .. + .
T Consensus 8 ~v~~~~~~I~~G~~~KvVLar~~~~~~~~~~~~~~l~~~L~~~~p~~y~f~~~~~---~~vGaSPE~L~~~~~~~~~l~t 84 (257)
T PF00425_consen 8 AVRKAQEHIRAGELYKVVLARRFELPFPSPIDPLALFRRLRKRNPSAYVFYFQFG---AFVGASPERLFRVDGGGRRLET 84 (257)
T ss_dssp HHHHHHHHHHTTS-SEEEEEEEEEEEESSECHHHHHHHHHHHHSTTSEEEEEEES---EEEEEESSEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEeeEEEEecCCCCCHHHHHHHHHHhCCCceEEEEecc---eEEecCHHHHhhhcccceeEEE
Confidence 467888999999999999987652 23445668899999999998755321 3333 11 2 3
Q ss_pred EEEEEeecCcccHHHHHHHHHHHH
Q 024981 193 SVLCLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 193 a~Vaitd~g~eDk~~l~klve~i~ 216 (259)
.++|-|-....|...-..+.+.+.
T Consensus 85 ~~lAGT~~rg~~~~~d~~~~~~L~ 108 (257)
T PF00425_consen 85 EPLAGTRPRGADPEEDAELAEELL 108 (257)
T ss_dssp EEEEEEEECSSSHHHHHHHHHHHH
T ss_pred eccccCCCCCCChHHhHHHHHHhh
Confidence 467777765555544344433333
No 217
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=20.54 E-value=5.6e+02 Score=22.25 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=34.1
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCch-----hhHHhHHHHhhh---cCCCEEEeCCcchh
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPV-----ELVVWLPALCRK---MEIPYCIVKGKARL 183 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~-----elv~~LpaLC~~---~~VPy~~v~sK~~L 183 (259)
.+.+.+.++..++.+||++.|+... +... +..+++. .++||..+.+.=++
T Consensus 24 ~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~-~~~~~~~l~~~~~p~~~~~GNHD~ 81 (214)
T cd07399 24 TDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEA-ADKAFARLDKAGIPYSVLAGNHDL 81 (214)
T ss_pred HHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHH-HHHHHHHHHHcCCcEEEECCCCcc
Confidence 4666677777889999999998642 2222 2334444 46999998887773
No 218
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.52 E-value=48 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHH----Hh------hhhhhhhhhhccCCCC
Q 024981 203 EDKMEFSRILEAIK----AN------FNDKYDEHRKKWGGGI 234 (259)
Q Consensus 203 eDk~~l~klve~i~----~n------ynd~y~e~~~~wgg~~ 234 (259)
=|.++|++|++-.+ .+ +.+||++--++|++.-
T Consensus 32 LDrGELdKli~r~r~pqpa~ys~~~~~~~r~dd~~y~~~~~Y 73 (88)
T COG3809 32 LDRGELDKLIERSRYPQPAEYSQPDHQHSRHDDEFYAQEEEY 73 (88)
T ss_pred ecchhHHHHHHHhcCCCCcccCCcchhcccccHHHHHHhhhh
Confidence 36678999999887 23 4455666667887643
No 219
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=20.51 E-value=88 Score=28.95 Aligned_cols=95 Identities=18% Similarity=0.311 Sum_probs=48.5
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh-cCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHH
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK-MEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKME 207 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~-~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~ 207 (259)
.--|.=.+...+-+..=++++ .+.-|.+... |...... ..|-+..-.+=+-|...+--+.+-.+.++|+.-|++..
T Consensus 64 ~YPGSP~ia~~llR~qDrl~l--~ELHp~d~~~-L~~~~~~~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~d 140 (245)
T PF04378_consen 64 FYPGSPAIAARLLREQDRLVL--FELHPQDFEA-LKKNFRRDRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKDD 140 (245)
T ss_dssp EEE-HHHHHHHHS-TTSEEEE--E--SHHHHHH-HTTS--TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STTH
T ss_pred cCCCCHHHHHHhCCccceEEE--EecCchHHHH-HHHHhccCCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCchH
Confidence 445777777766666555554 4676765432 2222222 23333333444456666666666667799999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccCCCC
Q 024981 208 FSRILEAIKANFNDKYDEHRKKWGGGI 234 (259)
Q Consensus 208 l~klve~i~~nynd~y~e~~~~wgg~~ 234 (259)
++.+++++.. .+++|-.|+
T Consensus 141 y~~v~~~l~~--------a~kR~~~G~ 159 (245)
T PF04378_consen 141 YQRVVDALAK--------ALKRWPTGV 159 (245)
T ss_dssp HHHHHHHHHH--------HHHH-TTSE
T ss_pred HHHHHHHHHH--------HHHhcCCcE
Confidence 9999999886 446787775
No 220
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=20.49 E-value=87 Score=36.53 Aligned_cols=57 Identities=26% Similarity=0.329 Sum_probs=43.1
Q ss_pred ccEEEEeCCCC-------c--hhhHHhHHHHhhhcCCCEEE--eCCcchhhhhhcCCCeEEEEEeecC
Q 024981 145 AQLVVIAHDVD-------P--VELVVWLPALCRKMEIPYCI--VKGKARLGVIVHKKTASVLCLTTVK 201 (259)
Q Consensus 145 AkLVVIA~Dvd-------P--~elv~~LpaLC~~~~VPy~~--v~sK~~LG~avGkk~~a~Vaitd~g 201 (259)
-++|||++|+. | .++......|+++++||-++ +.|-+++|-|--.+.+--|+..|..
T Consensus 1546 r~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlAeei~~lfkVaw~d~~ 1613 (2196)
T KOG0368|consen 1546 RDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLAEEIKPLFKVAWVDED 1613 (2196)
T ss_pred ceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccHHHHHHHheeeccCCC
Confidence 46999999995 2 24555567899999999887 4588899977666666667777763
No 221
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=20.36 E-value=5e+02 Score=23.42 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchh--------------hHHhHHHHhhhcCCCEEEeCC
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVE--------------LVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~e--------------lv~~LpaLC~~~~VPy~~v~s 179 (259)
+..+.+++++|+ +|.+..|-++.. ...-...|+.+.|+|++.+..
T Consensus 181 ~~~~~~~Lk~g~--~v~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~ 239 (295)
T PF03279_consen 181 IRELIRALKEGG--IVGLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFA 239 (295)
T ss_pred HHHHHHHhccCC--EEEEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEE
Confidence 678888998887 899999976422 122245678888888887664
No 222
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.27 E-value=4.2e+02 Score=20.52 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=31.4
Q ss_pred HHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC-cchhhhhhcCCC
Q 024981 138 YLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG-KARLGVIVHKKT 191 (259)
Q Consensus 138 k~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s-K~~LG~avGkk~ 191 (259)
..+..+.+.+|.|+.|- +.+ +..++++++++|-++.+ ...+++..|...
T Consensus 51 ~~~~~~~~~vv~is~d~-~~~----~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 51 EEFKALGAVVIGVSPDS-VES----HAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred HHHHHCCCEEEEEcCCC-HHH----HHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 33445567788888762 322 45677888888876554 456777777654
No 223
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=20.19 E-value=4.8e+02 Score=22.50 Aligned_cols=71 Identities=7% Similarity=0.082 Sum_probs=41.3
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcCCCEE-EeCCcchhh--hhhc----CCCeEEEEEeecCcc-cHHHHHHHHHHHHH
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKMEIPYC-IVKGKARLG--VIVH----KKTASVLCLTTVKNE-DKMEFSRILEAIKA 217 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~VPy~-~v~sK~~LG--~avG----kk~~a~Vaitd~g~e-Dk~~l~klve~i~~ 217 (259)
-|||.-|.|.......+..++..++.+.+ .+.....+| .++. ....-.|.++|.+.. +...+.++++.+.+
T Consensus 42 eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~ 120 (243)
T PLN02726 42 EIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRE 120 (243)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 35566677765555667777777765544 333333333 3332 122346778887664 55678888887754
Done!