Query 024981
Match_columns 259
No_of_seqs 261 out of 1065
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_H 60S ribosomal protein L 100.0 1E-114 5E-119 780.4 7.5 258 1-259 1-258 (258)
2 4a17_F RPL7A, 60S ribosomal pr 100.0 9E-110 3E-114 750.5 22.8 252 1-259 3-254 (255)
3 3izc_H 60S ribosomal protein R 100.0 3E-108 1E-112 741.8 7.6 250 1-252 1-255 (256)
4 2zkr_f 60S ribosomal protein L 100.0 9E-104 3E-108 716.8 8.1 254 6-259 9-266 (266)
5 3jyw_G 60S ribosomal protein L 100.0 1.7E-34 5.9E-39 233.3 -1.4 109 107-215 2-112 (113)
6 2lbw_A H/ACA ribonucleoprotein 100.0 3.1E-29 1E-33 203.5 9.5 113 101-229 4-117 (121)
7 2ale_A SNU13, NHP2/L7AE family 99.9 6.8E-28 2.3E-32 199.4 11.6 120 97-230 12-132 (134)
8 1xbi_A 50S ribosomal protein L 99.9 1.2E-25 3.9E-30 182.2 10.3 106 96-217 11-117 (120)
9 1rlg_A 50S ribosomal protein L 99.9 2.2E-25 7.7E-30 179.8 10.9 109 97-217 7-116 (119)
10 1vq8_F 50S ribosomal protein L 99.9 6.4E-25 2.2E-29 177.3 12.9 109 97-217 9-118 (120)
11 2xzm_U Ribosomal protein L7AE 99.9 1.4E-25 4.9E-30 183.7 7.3 105 101-216 8-125 (126)
12 2fc3_A 50S ribosomal protein L 99.9 1.5E-24 5.2E-29 176.2 12.3 109 97-217 8-117 (124)
13 3o85_A Ribosomal protein L7AE; 99.9 1.1E-23 3.7E-28 171.4 13.1 106 99-216 13-119 (122)
14 2jnb_A NHP2-like protein 1; sp 99.9 2.5E-23 8.5E-28 174.2 10.1 108 98-216 31-140 (144)
15 2aif_A Ribosomal protein L7A; 99.9 3.3E-22 1.1E-26 165.1 12.4 97 97-204 21-118 (135)
16 3v7q_A Probable ribosomal prot 99.9 1E-22 3.5E-27 160.1 8.1 89 102-202 4-92 (101)
17 3on1_A BH2414 protein; structu 99.9 2.4E-22 8.3E-27 157.6 10.2 89 103-203 4-92 (101)
18 3cpq_A 50S ribosomal protein L 99.8 4.5E-21 1.5E-25 152.8 10.8 90 103-204 7-98 (110)
19 1w41_A 50S ribosomal protein L 99.8 6.4E-21 2.2E-25 149.4 10.4 89 104-204 3-93 (101)
20 4a18_G RPL30; ribosome, eukary 99.8 5.4E-21 1.8E-25 151.0 8.3 93 101-205 6-100 (104)
21 3j21_Z 50S ribosomal protein L 99.8 2.4E-20 8.4E-25 145.7 11.7 89 105-205 3-93 (99)
22 3iz5_f 60S ribosomal protein L 99.8 1.2E-20 4E-25 151.7 9.4 93 101-205 10-104 (112)
23 3v7e_A Ribosome-associated pro 99.8 1.2E-20 4E-25 143.5 8.4 69 129-198 12-81 (82)
24 3u5e_c L32, RP73, YL38, 60S ri 99.8 1.5E-20 5.2E-25 148.7 7.9 93 101-205 6-100 (105)
25 3u5c_M 40S ribosomal protein S 99.8 3E-19 1E-23 149.6 8.0 103 103-217 26-142 (143)
26 3vi6_A 60S ribosomal protein L 99.7 1.3E-18 4.6E-23 142.1 4.2 107 102-226 12-120 (125)
27 2kg4_A Growth arrest and DNA-d 99.7 1.4E-16 4.8E-21 136.1 10.3 107 101-218 19-150 (165)
28 3cg6_A Growth arrest and DNA-d 99.2 2.6E-10 9.1E-15 95.6 12.3 103 106-219 14-133 (146)
29 3ffm_A Growth arrest and DNA-d 99.0 3.4E-09 1.2E-13 90.4 11.4 102 106-218 35-153 (167)
30 3ir9_A Peptide chain release f 92.2 0.58 2E-05 39.2 8.3 59 129-187 47-149 (166)
31 3nk6_A 23S rRNA methyltransfer 88.3 2.7 9.2E-05 37.6 9.7 71 127-201 34-106 (277)
32 1b93_A Protein (methylglyoxal 84.9 1.7 5.8E-05 36.2 6.0 46 132-177 70-119 (152)
33 3agk_A Peptide chain release f 84.1 6.3 0.00021 36.3 10.2 89 85-185 262-353 (373)
34 1x52_A Pelota homolog, CGI-17; 83.1 1.7 5.7E-05 34.7 5.1 70 129-200 39-115 (124)
35 3e20_C Eukaryotic peptide chai 82.8 5.4 0.00018 38.1 9.3 72 129-200 306-422 (441)
36 1dt9_A ERF1, protein (eukaryot 81.4 19 0.00064 33.9 12.5 98 82-186 260-401 (437)
37 1vmd_A MGS, methylglyoxal synt 81.4 2.2 7.4E-05 36.6 5.4 47 132-178 86-136 (178)
38 2xw6_A MGS, methylglyoxal synt 81.3 1.7 5.8E-05 35.4 4.5 45 131-176 61-110 (134)
39 3j15_A Protein pelota; ribosom 81.0 2.7 9.3E-05 39.0 6.4 59 129-187 281-342 (357)
40 3obw_A Protein pelota homolog; 80.3 5.7 0.0002 37.0 8.4 60 128-187 285-349 (364)
41 3oby_A Protein pelota homolog; 80.0 3.1 0.0001 38.7 6.4 74 129-203 266-343 (352)
42 2qi2_A Pelota, cell division p 80.0 6.3 0.00021 36.4 8.5 111 80-201 223-337 (347)
43 2ohw_A YUEI protein; structura 77.4 13 0.00043 30.1 8.6 87 87-179 9-97 (133)
44 1gz0_A Hypothetical tRNA/RRNA 76.1 7.6 0.00026 34.1 7.5 72 127-200 12-86 (253)
45 3nkl_A UDP-D-quinovosamine 4-d 73.5 5.1 0.00018 30.6 5.1 54 130-183 51-104 (141)
46 1ipa_A RRMH, RNA 2'-O-ribose m 71.2 10 0.00034 33.8 7.1 61 128-190 29-91 (274)
47 3agj_B Protein pelota homolog; 70.7 11 0.00036 34.9 7.4 72 129-201 273-350 (358)
48 2yvq_A Carbamoyl-phosphate syn 69.9 4.8 0.00016 32.3 4.3 43 134-176 86-130 (143)
49 2vgn_A DOM34; translation term 65.2 19 0.00066 33.5 8.0 72 128-200 297-374 (386)
50 3mca_B Protein DOM34, elongati 62.4 25 0.00086 32.9 8.2 69 129-199 292-367 (390)
51 3cg0_A Response regulator rece 59.0 44 0.0015 24.1 7.6 53 130-182 40-93 (140)
52 3kht_A Response regulator; PSI 57.0 29 0.001 25.4 6.4 53 129-181 36-91 (144)
53 1xty_A PTH, peptidyl-tRNA hydr 56.0 58 0.002 25.4 8.2 67 138-212 48-114 (120)
54 1pjq_A CYSG, siroheme synthase 55.6 17 0.00058 34.3 5.8 78 144-225 72-153 (457)
55 3cg4_A Response regulator rece 54.9 57 0.002 23.6 8.8 88 129-217 36-126 (142)
56 2zv3_A PTH, peptidyl-tRNA hydr 54.0 46 0.0016 25.8 7.2 70 135-212 40-109 (115)
57 1wn2_A Peptidyl-tRNA hydrolase 52.1 70 0.0024 25.1 8.1 69 136-212 47-115 (121)
58 3cnb_A DNA-binding response re 51.2 48 0.0016 23.9 6.7 54 129-182 39-95 (143)
59 1kyq_A Met8P, siroheme biosynt 51.0 23 0.00077 31.7 5.6 71 144-219 106-185 (274)
60 3dfz_A SIRC, precorrin-2 dehyd 50.9 18 0.00062 31.3 4.8 78 144-226 91-172 (223)
61 1rlk_A Hypothetical protein TA 50.0 79 0.0027 24.5 8.0 70 135-212 42-111 (117)
62 3szu_A ISPH, 4-hydroxy-3-methy 48.7 37 0.0013 31.5 6.7 79 145-226 226-305 (328)
63 1q7s_A BIT1, protein CGI-147; 48.0 82 0.0028 24.4 7.8 69 135-212 42-111 (117)
64 2qzj_A Two-component response 46.5 61 0.0021 23.6 6.7 87 130-220 34-123 (136)
65 1uf3_A Hypothetical protein TT 46.5 39 0.0013 26.9 5.9 47 135-182 23-74 (228)
66 3ib7_A ICC protein; metallopho 45.9 31 0.0011 29.4 5.5 51 133-183 53-112 (330)
67 2l5o_A Putative thioredoxin; s 43.8 95 0.0032 22.9 7.9 53 145-200 62-115 (153)
68 3h5i_A Response regulator/sens 43.4 92 0.0032 22.6 10.0 88 129-217 34-123 (140)
69 3dnf_A ISPH, LYTB, 4-hydroxy-3 41.5 97 0.0033 28.2 8.3 71 144-217 209-280 (297)
70 2yc2_C IFT27, small RAB-relate 41.1 42 0.0014 26.1 5.2 42 144-185 96-146 (208)
71 2f9s_A Thiol-disulfide oxidore 40.9 71 0.0024 23.7 6.3 52 144-199 59-111 (151)
72 2zay_A Response regulator rece 40.2 92 0.0031 22.6 6.8 54 129-182 37-93 (147)
73 3gkn_A Bacterioferritin comigr 38.8 1.2E+02 0.0042 22.8 8.4 45 141-190 66-111 (163)
74 3cwc_A Putative glycerate kina 38.3 58 0.002 30.7 6.4 100 127-230 266-376 (383)
75 3kcm_A Thioredoxin family prot 37.7 1.2E+02 0.004 22.4 7.1 52 147-199 62-114 (154)
76 1k66_A Phytochrome response re 36.6 1.2E+02 0.004 21.8 6.8 53 129-181 37-102 (149)
77 1x7o_A Avirb, rRNA methyltrans 36.3 88 0.003 27.8 7.1 68 128-199 41-111 (287)
78 2j01_J 50S ribosomal protein L 36.3 1.7E+02 0.0059 23.8 8.4 108 133-246 10-128 (173)
79 1rzw_A Protein AF2095(GR4); be 36.0 1E+02 0.0034 24.4 6.6 55 138-197 42-96 (123)
80 3hv2_A Response regulator/HD d 35.9 1.3E+02 0.0044 22.2 7.7 54 129-182 43-97 (153)
81 4fbw_A DNA repair protein RAD3 35.0 59 0.002 30.7 6.0 23 133-155 41-63 (417)
82 3ira_A Conserved protein; meth 34.5 43 0.0015 27.6 4.4 76 146-227 74-154 (173)
83 2ioj_A Hypothetical protein AF 33.5 88 0.003 24.1 5.9 48 128-178 55-105 (139)
84 3or5_A Thiol:disulfide interch 32.9 1.5E+02 0.0051 22.0 7.6 39 145-187 68-106 (165)
85 2qr3_A Two-component system re 32.3 1.3E+02 0.0046 21.3 6.5 54 129-182 32-91 (140)
86 3drn_A Peroxiredoxin, bacterio 32.0 1.7E+02 0.0057 22.2 9.0 42 144-190 63-105 (161)
87 1sur_A PAPS reductase; assimil 31.5 2.1E+02 0.0072 23.3 8.6 93 77-179 7-105 (215)
88 3st8_A Bifunctional protein GL 31.3 61 0.0021 30.3 5.4 101 116-217 19-138 (501)
89 3av0_A DNA double-strand break 31.1 62 0.0021 29.2 5.3 49 133-182 49-106 (386)
90 3eod_A Protein HNR; response r 31.0 85 0.0029 22.3 5.2 54 129-182 36-90 (130)
91 3vot_A L-amino acid ligase, BL 31.0 2.1E+02 0.007 25.7 8.8 107 143-259 4-124 (425)
92 2yvt_A Hypothetical protein AQ 30.7 88 0.003 25.6 5.8 24 133-156 21-44 (260)
93 1xky_A Dihydrodipicolinate syn 30.5 2.8E+02 0.0096 24.4 9.8 138 70-216 17-189 (301)
94 2dyk_A GTP-binding protein; GT 30.4 39 0.0013 25.0 3.3 42 144-185 79-122 (161)
95 1ii7_A MRE11 nuclease; RAD50, 30.3 1.1E+02 0.0037 26.8 6.6 47 134-180 30-84 (333)
96 3i8s_A Ferrous iron transport 30.2 47 0.0016 28.5 4.1 42 143-184 84-125 (274)
97 3n53_A Response regulator rece 30.1 1.5E+02 0.0052 21.2 8.2 55 129-183 31-88 (140)
98 3grc_A Sensor protein, kinase; 30.1 1.5E+02 0.0052 21.2 9.8 58 129-186 35-95 (140)
99 1ivn_A Thioesterase I; hydrola 30.0 98 0.0033 24.0 5.7 45 134-178 89-140 (190)
100 3flu_A DHDPS, dihydrodipicolin 29.8 2.8E+02 0.0097 24.2 10.7 137 71-216 13-184 (297)
101 2wji_A Ferrous iron transport 29.7 65 0.0022 24.5 4.5 40 144-184 81-121 (165)
102 3qze_A DHDPS, dihydrodipicolin 29.5 3E+02 0.01 24.4 10.7 140 70-218 28-202 (314)
103 3tho_B Exonuclease, putative; 29.0 70 0.0024 29.0 5.3 48 133-182 32-89 (379)
104 3hdg_A Uncharacterized protein 28.9 1.6E+02 0.0054 21.0 6.9 54 129-182 36-90 (137)
105 1s3l_A Hypothetical protein MJ 28.8 65 0.0022 26.2 4.6 45 134-182 42-86 (190)
106 2pln_A HP1043, response regula 28.8 1.2E+02 0.0042 21.7 5.7 48 130-181 48-96 (137)
107 2q8u_A Exonuclease, putative; 28.6 90 0.0031 27.3 5.8 46 133-180 50-105 (336)
108 3d03_A Phosphohydrolase; glyce 28.4 1.2E+02 0.0042 24.7 6.3 50 133-182 28-82 (274)
109 1to6_A Glycerate kinase; glyce 28.2 1.8E+02 0.0062 27.2 8.0 98 128-230 258-366 (371)
110 3iby_A Ferrous iron transport 28.2 53 0.0018 28.1 4.1 42 143-184 82-123 (256)
111 3tak_A DHDPS, dihydrodipicolin 28.1 3E+02 0.01 24.0 11.6 110 101-219 53-181 (291)
112 4fbk_A DNA repair and telomere 27.5 89 0.003 30.2 5.9 22 134-155 105-126 (472)
113 3k53_A Ferrous iron transport 27.1 79 0.0027 26.7 5.0 19 163-181 131-149 (271)
114 3ecd_A Serine hydroxymethyltra 27.1 70 0.0024 27.9 4.8 43 133-176 161-205 (425)
115 3ly0_A Dipeptidase AC. metallo 27.0 88 0.003 29.1 5.6 69 153-235 279-348 (364)
116 1k68_A Phytochrome response re 26.9 1.7E+02 0.0057 20.6 6.7 53 129-181 33-95 (140)
117 3h5d_A DHDPS, dihydrodipicolin 26.7 3.4E+02 0.011 24.1 9.9 137 70-216 12-184 (311)
118 1ytl_A Acetyl-COA decarboxylas 25.8 1.2E+02 0.0043 24.9 5.8 50 125-177 17-67 (174)
119 3a1s_A Iron(II) transport prot 25.1 82 0.0028 26.8 4.7 42 143-184 82-123 (258)
120 3a5f_A Dihydrodipicolinate syn 25.0 3.4E+02 0.012 23.6 10.0 106 106-219 57-181 (291)
121 1cp2_A CP2, nitrogenase iron p 24.8 92 0.0031 25.8 4.9 43 148-190 178-221 (269)
122 2x5n_A SPRPN10, 26S proteasome 24.7 1.2E+02 0.004 25.0 5.5 47 129-176 86-140 (192)
123 3t1o_A Gliding protein MGLA; G 24.6 59 0.002 24.8 3.4 41 144-184 97-148 (198)
124 3gbx_A Serine hydroxymethyltra 24.5 81 0.0028 27.4 4.7 43 133-176 158-202 (420)
125 1jkx_A GART;, phosphoribosylgl 24.5 1E+02 0.0035 26.1 5.2 48 127-178 4-57 (212)
126 3hp4_A GDSL-esterase; psychrot 24.2 1.2E+02 0.0041 23.1 5.2 43 136-178 95-144 (185)
127 3fkr_A L-2-keto-3-deoxyarabona 24.1 3.7E+02 0.013 23.7 10.8 142 70-219 13-192 (309)
128 2qxy_A Response regulator; reg 24.1 1.7E+02 0.0059 20.9 5.8 53 129-182 33-86 (142)
129 3ia1_A THIO-disulfide isomeras 24.1 1E+02 0.0035 22.8 4.6 54 144-199 60-117 (154)
130 3g0t_A Putative aminotransfera 24.0 93 0.0032 27.4 5.0 44 133-176 171-220 (437)
131 3i6v_A Periplasmic His/Glu/Gln 23.6 2.7E+02 0.0091 21.9 7.4 93 128-237 129-222 (232)
132 2a22_A Vacuolar protein sortin 23.5 94 0.0032 25.5 4.7 42 137-182 48-89 (215)
133 2ggt_A SCO1 protein homolog, m 23.5 2.3E+02 0.0077 21.0 9.0 46 144-190 61-110 (164)
134 3tsm_A IGPS, indole-3-glycerol 23.3 3.1E+02 0.01 24.2 8.3 100 135-243 134-238 (272)
135 3f6p_A Transcriptional regulat 23.0 2E+02 0.0068 20.1 6.2 52 130-181 32-83 (120)
136 3del_B Arginine binding protei 22.8 2.7E+02 0.0093 21.6 7.4 94 128-239 142-239 (242)
137 3fw2_A Thiol-disulfide oxidore 22.8 2.3E+02 0.0079 20.8 8.8 53 145-201 70-126 (150)
138 3mfq_A TROA, high-affinity zin 22.3 1E+02 0.0035 27.0 4.9 23 155-178 197-219 (282)
139 3ha9_A Uncharacterized thiored 22.2 2.4E+02 0.0083 21.0 6.6 37 163-199 101-138 (165)
140 1qkk_A DCTD, C4-dicarboxylate 22.1 2.2E+02 0.0076 20.8 6.2 53 130-182 33-86 (155)
141 2j48_A Two-component sensor ki 21.9 1.9E+02 0.0064 19.4 5.9 53 129-181 30-85 (119)
142 1svv_A Threonine aldolase; str 21.9 1.2E+02 0.0043 25.4 5.2 43 133-176 128-182 (359)
143 2yv5_A YJEQ protein; hydrolase 21.8 82 0.0028 27.6 4.1 76 135-210 101-183 (302)
144 1su1_A Hypothetical protein YF 21.8 90 0.0031 25.6 4.2 19 136-154 44-62 (208)
145 3dip_A Enolase; structural gen 21.7 3.2E+02 0.011 25.1 8.4 101 77-186 220-330 (410)
146 1d2f_A MALY protein; aminotran 21.7 98 0.0034 26.8 4.6 44 133-176 151-200 (390)
147 3cf4_G Acetyl-COA decarboxylas 21.6 1.8E+02 0.006 23.2 5.9 45 133-177 24-68 (170)
148 2o1e_A YCDH; alpha-beta protei 21.5 4.2E+02 0.014 23.3 10.3 35 154-189 223-259 (312)
149 3cwq_A Para family chromosome 21.4 79 0.0027 25.8 3.8 86 132-219 107-199 (209)
150 3av3_A Phosphoribosylglycinami 21.4 1.6E+02 0.0055 24.8 5.8 49 127-179 7-61 (212)
151 1z2a_A RAS-related protein RAB 21.3 92 0.0031 23.0 3.8 41 144-184 77-122 (168)
152 1c7n_A Cystalysin; transferase 21.2 1E+02 0.0034 26.8 4.6 44 133-176 153-202 (399)
153 2h57_A ADP-ribosylation factor 21.2 66 0.0023 24.9 3.1 41 144-184 90-139 (190)
154 1tp9_A Peroxiredoxin, PRX D (t 21.2 2.8E+02 0.0095 21.1 7.6 46 140-190 66-115 (162)
155 3gt7_A Sensor protein; structu 21.1 2.5E+02 0.0086 20.6 6.6 53 129-181 36-91 (154)
156 2ojp_A DHDPS, dihydrodipicolin 21.1 3.8E+02 0.013 23.3 8.4 103 105-215 56-177 (292)
157 3pqc_A Probable GTP-binding pr 21.0 81 0.0028 24.1 3.5 39 145-183 105-145 (195)
158 2nxf_A Putative dimetal phosph 20.9 1.6E+02 0.0054 24.4 5.6 50 134-183 41-99 (322)
159 3lhk_A Putative DNA binding pr 20.8 2.2E+02 0.0075 22.5 6.2 47 132-179 54-102 (154)
160 2rjn_A Response regulator rece 20.8 2.5E+02 0.0086 20.5 7.1 54 129-182 36-90 (154)
161 3qq5_A Small GTP-binding prote 20.7 1.1E+02 0.0039 28.5 5.1 40 145-184 114-153 (423)
162 1kao_A RAP2A; GTP-binding prot 20.7 87 0.003 22.9 3.6 20 165-184 102-121 (167)
163 1zd9_A ADP-ribosylation factor 20.6 62 0.0021 25.2 2.8 41 144-184 90-137 (188)
164 2wfc_A Peroxiredoxin 5, PRDX5; 20.5 2.1E+02 0.0073 22.3 6.1 45 141-190 63-111 (167)
165 3e96_A Dihydrodipicolinate syn 20.5 3.6E+02 0.012 23.8 8.3 137 70-216 16-184 (316)
166 4dhe_A Probable GTP-binding pr 20.5 85 0.0029 24.9 3.7 39 145-183 116-156 (223)
167 2fn4_A P23, RAS-related protei 20.4 94 0.0032 23.3 3.8 40 145-184 81-127 (181)
168 1upt_A ARL1, ADP-ribosylation 20.4 70 0.0024 23.8 3.0 41 144-184 74-121 (171)
169 2gkg_A Response regulator homo 20.4 2.2E+02 0.0074 19.6 7.9 53 129-182 34-90 (127)
170 3q85_A GTP-binding protein REM 20.4 77 0.0026 23.6 3.2 40 145-184 76-122 (169)
171 2lkc_A Translation initiation 20.3 83 0.0028 23.6 3.4 39 145-184 79-120 (178)
172 1zgz_A Torcad operon transcrip 20.3 2.2E+02 0.0075 19.6 7.0 52 130-181 32-83 (122)
173 3qax_A Probable ABC transporte 20.2 3.2E+02 0.011 21.5 7.5 92 129-235 164-256 (268)
174 2lrn_A Thiol:disulfide interch 20.2 2.3E+02 0.0079 20.9 6.0 52 145-200 63-118 (152)
175 3t1i_A Double-strand break rep 20.1 1.6E+02 0.0053 27.9 5.9 23 133-155 60-82 (431)
176 2y7i_A STM4351; arginine-bindi 20.1 2.7E+02 0.0094 21.3 6.6 90 129-232 138-228 (229)
177 2vi8_A Serine hydroxymethyltra 20.1 1.1E+02 0.0037 26.5 4.5 44 133-176 152-196 (405)
178 3b1v_A Ferrous iron uptake tra 20.0 99 0.0034 26.7 4.2 38 144-181 107-147 (272)
179 3eyt_A Uncharacterized protein 20.0 2.7E+02 0.0091 20.5 7.7 38 162-199 82-125 (158)
No 1
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=100.00 E-value=1.4e-114 Score=780.40 Aligned_cols=258 Identities=86% Similarity=1.283 Sum_probs=199.3
Q ss_pred CCCCcCcccccchhhhhhccccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCccccccccc
Q 024981 1 MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKT 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~k~~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ 80 (259)
|+|+ |++++++|.+.++++++|||||+|||||||||||||||||||||+||+||||||||+|||+||||||+||||+++
T Consensus 1 ~~pk-~~~~~~~~~~~~~~k~~nplfekrpknfgigqdiqpkrdltrfvkwP~yirlqrqr~il~~rlKvppainqF~~~ 79 (258)
T 3iz5_H 1 MAPK-RGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRT 79 (258)
T ss_dssp ----------------------------------------------------------CCSCCCCHHHHSCCSCSHHHHH
T ss_pred CCCC-CCCCCCCccccccccccCcccccCCCccccCccCCCCcccceeeeccceeeHHHHHHHHHhcccCCCcccccCCc
Confidence 8887 444454543333468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhH
Q 024981 81 LDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELV 160 (259)
Q Consensus 81 ld~~~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv 160 (259)
||+|+|||||+|+|||||||++||++||++.|+++|+|+++|+++|++|..|+|+|+++||+++|+|||||+||||+|++
T Consensus 80 ld~~tatql~kl~~KYrPEtk~ekk~rL~~~a~~ka~gk~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV 159 (258)
T 3iz5_H 80 LDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELV 159 (258)
T ss_dssp HHHHHCCCCCCCCCCCCCTHHHHHHHHHHHHHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHH
T ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCCCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhH
Q 024981 161 VWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240 (259)
Q Consensus 161 ~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~ 240 (259)
.|||+||++||||||+|+|+++||+++|+++|+||||+|+|+||+++|++|||+|++||||+||||||||||||||+||+
T Consensus 160 ~fLPaLC~k~gVPY~iVk~KarLG~~vgrKtct~Va~t~v~~eDk~aLakLveairtnynd~y~ei~~~wGG~vlg~ks~ 239 (258)
T 3iz5_H 160 VWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ 239 (258)
T ss_dssp HHHHHHHTTTTCCEEEESCHHHHHHHTTCSSCCSEEEEESCCSCCHHHHHHHHHHTTTSCCCCCCCCSSCCCCCCHHHHH
T ss_pred hHHHHHHHhcCCCeEEECCHHHHHHHhCCccceEEEEEecCHHHHHHHHHHHHHHHhHhhhhhHHHhhccCCCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 024981 241 AKTKAKEKLLAKEAAQRMS 259 (259)
Q Consensus 241 ~~~~k~~k~~~~e~~~k~~ 259 (259)
++|+|+|||+++|+|+|+.
T Consensus 240 a~~ak~eka~ake~a~k~~ 258 (258)
T 3iz5_H 240 AKTKAREKLLAKEAAQRMT 258 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhHHHHhhcC
Confidence 9999999999999999974
No 2
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=100.00 E-value=8.9e-110 Score=750.48 Aligned_cols=252 Identities=56% Similarity=0.942 Sum_probs=230.1
Q ss_pred CCCCcCcccccchhhhhhccccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCccccccccc
Q 024981 1 MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKT 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~k~~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ 80 (259)
|+|++|++. ++ ..+++|||||+|||||||||||||||||||||+||+||||||||+|||+||||||+||||+++
T Consensus 3 ~~p~~~~~~----~~--~~k~~nplfekrpknfgig~diqpkrdlt~fvkwp~yirlqrq~~il~~rlkvpp~inqf~~~ 76 (255)
T 4a17_F 3 KAPKKITKP----KK--AEKKKNPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKT 76 (255)
T ss_dssp ----------------------CCTTCCCCCCCSSSSSCCCCCCCGGGCBCCHHHHHHHHHHHHHHHSBCCHHHHGGGCC
T ss_pred CCCccCccc----cc--cccccCcccccCCCcCCcCCCCCCccccccceeccceeeHHHHHHHHHhcccCCCcccccCCC
Confidence 667644422 22 348899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhH
Q 024981 81 LDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELV 160 (259)
Q Consensus 81 ld~~~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv 160 (259)
||+|+|||||+|+|||||||++||++||++.|+++|+|+++++++|++|..|+++|+++|++++|+|||||+||||++++
T Consensus 77 ld~~~a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv 156 (255)
T 4a17_F 77 LDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELV 156 (255)
T ss_dssp CCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHH
T ss_pred CChhhHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcCCceEEEEeCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhH
Q 024981 161 VWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240 (259)
Q Consensus 161 ~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~ 240 (259)
.|||+||++||||||+|+|+++||++||+++|+||||+|+|+||+++|++|+|+|++||||| |||||||||||||+||+
T Consensus 157 ~~LPaLCee~~VPY~~V~sK~~LG~avGrKt~s~Vaitdv~~EDk~al~kLve~iktnynd~-~e~~~~wgG~~lg~ks~ 235 (255)
T 4a17_F 157 IFLPQLCRKNDVPFAFVKGKAALGKLVNKKTATAVALTEVRNEDKAKLQQFSELFKTNYNAN-DELRKTWGGGILGQKSQ 235 (255)
T ss_dssp HHHHHHHHHTTCCEEEESCHHHHHHHHTSSCCSEEEECCCCHHHHHHHHHHHHHHHHHTTTC-CHHHHCCCBCCCCHHHH
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHhCCCcceEEEeeccCHHHHHHHHHHHHHHHhhcccc-chhhhccCCCccChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 024981 241 AKTKAKEKLLAKEAAQRMS 259 (259)
Q Consensus 241 ~~~~k~~k~~~~e~~~k~~ 259 (259)
++|+|+|||+++|+|+|+|
T Consensus 236 a~~~k~eka~ake~a~k~~ 254 (255)
T 4a17_F 236 HKVEALAKAVQEEQIKKAK 254 (255)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhHHHHHhcC
Confidence 9999999999999999986
No 3
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=100.00 E-value=3e-108 Score=741.84 Aligned_cols=250 Identities=56% Similarity=0.923 Sum_probs=191.3
Q ss_pred CCCCcCcccccch---hhhhhccccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCcccccc
Q 024981 1 MAPKRGVKALVAA---SKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQF 77 (259)
Q Consensus 1 ~~~~~~~~~~~~~---~~~~~k~~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf 77 (259)
|+| |++++++| +++++++++|||||+|||||||||||||||||||||+||+||||||||+|||+||||||+||||
T Consensus 1 ~~~--~kk~~~~p~~~kk~~~kk~~nplfekrpknfgig~diqpkrdl~~fvkwp~yi~lqrq~~il~~rlkvpp~inqf 78 (256)
T 3izc_H 1 MAP--GKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQF 78 (256)
T ss_dssp -------------------------------------------------------------CCSSCCCTTTTCCCSCSHH
T ss_pred CCC--CCCCCCCCcchhhhccccccCcccccCCcccccCCCCCCcccchhheeccceeeHHHHHHHHHhcccCCCchhhc
Confidence 664 77877777 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCC--CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCC
Q 024981 78 TKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKT--VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 78 ~~~ld~~~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~--~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~Dvd 155 (259)
|++||+|+|||||+|+|||||||++||++||++.|+++|+|++ +|+++|.+|..|+++|+++|++|+|+|||||+|||
T Consensus 79 ~~~ld~~~a~~l~kl~~kyrpetk~ekk~rl~~~a~~~a~gk~~~~~~k~p~~lk~G~keV~KaIekgKAkLVVIA~Dad 158 (256)
T 3izc_H 79 QYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVD 158 (256)
T ss_dssp HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSSCSSCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCS
T ss_pred CCcCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhccHHHHHHHHHhCcceEEEEeCCCC
Confidence 9999999999999999999999999999999999999999997 78999999999999999999999999999999999
Q ss_pred chhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCC
Q 024981 156 PVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIM 235 (259)
Q Consensus 156 P~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~l 235 (259)
|++++.||++||+++|||||+++|+.+||++||+++|+||||+|+|+||+++|++|+|+|++||||+|||||||||||||
T Consensus 159 P~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~~s~VAItD~g~eDk~al~kLve~iktnynd~y~e~~~~wgg~~l 238 (256)
T 3izc_H 159 PIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGIL 238 (256)
T ss_dssp SGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEESSCCSCCHHHHHHHHHHHHHCCCCCCCCCSSCCCCCC
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCcEEEEeecCChhhHHHHHHHHHHHHhhhhhhhhhHhhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHH
Q 024981 236 GSKSQAKTKAKEKLLAK 252 (259)
Q Consensus 236 g~ks~~~~~k~~k~~~~ 252 (259)
|+||+++|+|+|||++.
T Consensus 239 g~ks~~~~~k~~ka~~~ 255 (256)
T 3izc_H 239 GNKAQAKMDKRAKNSDS 255 (256)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999999999863
No 4
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=8.8e-104 Score=716.77 Aligned_cols=254 Identities=56% Similarity=0.957 Sum_probs=117.5
Q ss_pred Ccccccch---hhhhhccccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCcccccccccCC
Q 024981 6 GVKALVAA---SKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLD 82 (259)
Q Consensus 6 ~~~~~~~~---~~~~~k~~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ld 82 (259)
|++++++| +++++++++|||||+|||||||||||||||||||||+||+|||||||++||++||||||+||||+++||
T Consensus 9 ~kk~~~~~~~~k~~~~~~~~npl~ekrpknf~ig~~i~pkrdl~rfvkwp~yirlqrq~~il~~rlkvpp~inqf~~~ld 88 (266)
T 2zkr_f 9 GKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCCCCccccccccccccCCcccccCccccccCCCcccccchHhHhccchHHHHHHHHHHHHhhccCCCchhhcccccc
Confidence 66666666 777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCC-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHH
Q 024981 83 KNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKT-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVV 161 (259)
Q Consensus 83 ~~~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~ 161 (259)
+|+|+|||+|+|||||||++||++||+..|+++|+|++ +++++|.+|++|+++|+++|++|+|+|||||+||||++++.
T Consensus 89 ~~~a~~l~~l~~kyrpe~k~ekk~rl~~~a~~~a~~~~~~~~k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~ 168 (266)
T 2zkr_f 89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVV 168 (266)
T ss_dssp ---------------CHHHHHHHHHHHHTTSSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTT
T ss_pred chhHHHHHHHHhhcCcccHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHH
Confidence 99999999999999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHH
Q 024981 162 WLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQA 241 (259)
Q Consensus 162 ~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~ 241 (259)
|||+||+++|||||+++|+.+||++||+++|+||||+|.|+||+++|++|+|+|++||||+|||||+|||||+||+||++
T Consensus 169 ~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~~s~VAItD~G~eD~~al~klve~ik~~y~d~y~e~~~~wgg~~~g~ks~~ 248 (266)
T 2zkr_f 169 FLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVA 248 (266)
T ss_dssp HHHHHHHHHTCCEEEESCHHHHHHHHTSSCCSEEEETTCSSTTTTHHHHHHHHHC-------------------------
T ss_pred HHHHHHHhcCCCEEEECCHHHHHHHhCCCCceEEEEeecCcchHHHHHHHHHHHHHhhhhhhhHHHHhhCCCCcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 024981 242 KTKAKEKLLAKEAAQRMS 259 (259)
Q Consensus 242 ~~~k~~k~~~~e~~~k~~ 259 (259)
+++++||++++|+|+|+|
T Consensus 249 ~~~~~~k~~~~e~~~k~~ 266 (266)
T 2zkr_f 249 RIAKLEKAKAKELATKLG 266 (266)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhHHHHhhcC
Confidence 999999999999999975
No 5
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.97 E-value=1.7e-34 Score=233.34 Aligned_cols=109 Identities=60% Similarity=0.938 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCC--CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 107 RLLKKAQAEAEGKT--VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 107 rLl~~A~k~aaGk~--~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
||++.|+++|+|++ +|+++|++|.+|+++|+++|++|+++|||||+|+||++++.|||+||+++|||||+++|+.+||
T Consensus 2 rl~~~a~~~~~~~~~~~~~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 2 RLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp CCCSSCCCHHHHHHHHTCSSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred ccHHHHHHHhcCCCCCCCCCCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 57778888999998 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCeEEEEEeecCcccHHHHHHHHHHH
Q 024981 185 VIVHKKTASVLCLTTVKNEDKMEFSRILEAI 215 (259)
Q Consensus 185 ~avGkk~~a~Vaitd~g~eDk~~l~klve~i 215 (259)
++||+++|++|||+|+|+||+++|++|+|+|
T Consensus 82 ~a~G~k~~a~vai~d~~~ed~~~l~~l~e~~ 112 (113)
T 3jyw_G 82 TLVNQKTSAVAALTEVRAEDEAALAKLVSTI 112 (113)
T ss_dssp HHHCSSSCCSEEEECSCSSTTTTTHHHHTTT
T ss_pred HHHCCCCcEEEEEEeCCHHhHHHHHHHHHhh
Confidence 9999999999999999999999999999876
No 6
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.96 E-value=3.1e-29 Score=203.47 Aligned_cols=113 Identities=27% Similarity=0.433 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc
Q 024981 101 RAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
..+|.+++|++|.+ +|+ ++.|+++|+++|++|+++|||||+|+||++++.+||++|+++||||++++|+
T Consensus 4 l~~ki~~~L~~a~k--~gk---------l~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk 72 (121)
T 2lbw_A 4 LNKKVLKTVKKASK--AKN---------VKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSK 72 (121)
T ss_dssp HHHHHHHHHHHHHT--TTC---------EEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCH
T ss_pred HHHHHHHHHHHHHH--cCC---------ccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 46789999999988 888 9999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCC-eEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhc
Q 024981 181 ARLGVIVHKKT-ASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKK 229 (259)
Q Consensus 181 ~~LG~avGkk~-~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~ 229 (259)
.+||++||+++ +++++|+|.|..+.- +|.+++||+|+|||+++.
T Consensus 73 ~eLG~a~g~k~~~s~v~I~d~g~a~~~-----~~~~~~~y~~~y~~~~~~ 117 (121)
T 2lbw_A 73 QDLGAAGATKRPTSVVFIVPGSNKKKD-----GKNKEEEYKESFNEVVKE 117 (121)
T ss_dssp HHHHHHHTCSSCCSEEEECCSCTTGGG-----CSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEEcCcchHHH-----HHHHHHHHHHHHHHHHHH
Confidence 99999999876 789999999865432 788999999999999853
No 7
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.95 E-value=6.8e-28 Score=199.42 Aligned_cols=120 Identities=18% Similarity=0.327 Sum_probs=108.8
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 97 RPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|+...++.+++|++|.+ +|+ ++.|+++|+++|++|+++|||||+|+||++++.+|+++|+++||||++
T Consensus 12 a~~~~~~ki~~~L~lA~k--~gk---------l~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 12 ADAALTQQILDVVQQAAN--LRQ---------LKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp CCHHHHHHHHHHHHHHHH--TTC---------EEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--cCC---------cccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 455667888999999988 898 999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhhhhhcCCCe-EEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 024981 177 VKGKARLGVIVHKKTA-SVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKW 230 (259)
Q Consensus 177 v~sK~~LG~avGkk~~-a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~w 230 (259)
++|+.+||++||++++ ++|+|+|.++ .+|.++++.++++|++.+.|-++|.
T Consensus 81 v~sk~eLG~a~G~~~~~s~vaI~d~~~---s~~~~l~~~i~~~~~~~~~~~~~~~ 132 (134)
T 2ale_A 81 VPSRVALGRACGVSRPVIAASITTNDA---SAIKTQIYAVKDKIETLLILEHHHH 132 (134)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEECCTT---CTTHHHHHHHHHHHHHHHHSSCCCC
T ss_pred ECCHHHHHHHhCCCCCeEEEEEEcCCh---HHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999999999999985 7899999654 3488999999999999998876653
No 8
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.93 E-value=1.2e-25 Score=182.20 Aligned_cols=106 Identities=33% Similarity=0.498 Sum_probs=99.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEE
Q 024981 96 YRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 96 yrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~ 175 (259)
..||+.++|.++||++| |+ ++.|+++|+++|++|+++|||||+|+||++++.+|+.+|++++|||+
T Consensus 11 ~~p~~l~~k~~~ll~~A-----gk---------l~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~ 76 (120)
T 1xbi_A 11 KVPEEIQKELLDAVAKA-----QK---------IKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYA 76 (120)
T ss_dssp CCCHHHHHHHHHHHHTC-----SE---------EEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEE
T ss_pred cCCHHHHHHHHHHHHHc-----CC---------ccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEE
Confidence 47999999999999986 66 99999999999999999999999999999989999999999999999
Q ss_pred EeCCcchhhhhhcCC-CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 176 IVKGKARLGVIVHKK-TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 176 ~v~sK~~LG~avGkk-~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
+++|+.+||++||++ ++++|||+|.|.+|. +.+++|.+++
T Consensus 77 ~v~sk~eLG~a~G~~~~~s~vaI~d~g~a~~--l~~l~~~i~~ 117 (120)
T 1xbi_A 77 YVASKQDLGKAAGLEVAASSVAIINEGDAEE--LKVLIEKVNV 117 (120)
T ss_dssp EESCHHHHHHHTTCSSCCSEEEEEECSCHHH--HHHHHHHHHH
T ss_pred EeCCHHHHHHHhCCCCCEEEEEEeccchHHH--HHHHHHHHHH
Confidence 999999999999999 699999999997765 8999988875
No 9
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.92 E-value=2.2e-25 Score=179.77 Aligned_cols=109 Identities=38% Similarity=0.544 Sum_probs=101.2
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 97 RPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|+...++.+++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++
T Consensus 7 ~p~~l~~~i~~~L~lA~k--ag~---------l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 75 (119)
T 1rlg_A 7 VPEDMQNEALSLLEKVRE--SGK---------VKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIY 75 (119)
T ss_dssp CCSHHHHHHHHHHHHHHH--HSE---------EEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--hCC---------eeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 588899999999999998 888 999999999999999999999999999999889999999999999999
Q ss_pred eCCcchhhhhhcCC-CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 177 VKGKARLGVIVHKK-TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 177 v~sK~~LG~avGkk-~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
++|+.+||++||++ .++++||+|.|.++ ..++.|+|.+++
T Consensus 76 ~~sk~eLG~a~G~~~~~~~vaI~d~g~a~-~~~~~l~~~~~~ 116 (119)
T 1rlg_A 76 VKSKNDLGRAVGIEVPCASAAIINEGELR-KELGSLVEKIKG 116 (119)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEEECGGGH-HHHHHHHHHHHT
T ss_pred eCCHHHHHHHhCCCCCeEEEEEecCchHH-HHHHHHHHHHHH
Confidence 99999999999999 69999999998765 567888887764
No 10
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.92 E-value=6.4e-25 Score=177.34 Aligned_cols=109 Identities=27% Similarity=0.424 Sum_probs=101.2
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 97 RPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|++..++.+++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++
T Consensus 9 ~p~~l~~~i~~~L~~A~k--ag~---------l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 77 (120)
T 1vq8_F 9 VPADLEDDALEALEVARD--TGA---------VKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIF 77 (120)
T ss_dssp CCHHHHHHHHHHHHHHHH--SSC---------EEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--cCC---------EeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEE
Confidence 578889999999999998 898 999999999999999999999999999999899999999999999999
Q ss_pred eCCcchhhhhhcCC-CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 177 VKGKARLGVIVHKK-TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 177 v~sK~~LG~avGkk-~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
++|+.+||++||++ .++++||+|.|.+ +..++.|.|.|++
T Consensus 78 ~~sk~eLG~a~G~~~~~~~vaI~d~g~a-~~~~~~l~~~~~~ 118 (120)
T 1vq8_F 78 VEQQDDLGHAAGLEVGSAAAAVTDAGEA-DADVEDIADKVEE 118 (120)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEESSCSSC-HHHHHHHHHHHHH
T ss_pred ECCHHHHHHHhCCCCCeEEEEEecCchH-HHHHHHHHHHHHh
Confidence 99999999999999 6999999999865 5568888888764
No 11
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.92 E-value=1.4e-25 Score=183.74 Aligned_cols=105 Identities=30% Similarity=0.370 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc
Q 024981 101 RAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
-..+.+.+|+.|++ +|+ ++.|+++|+++|++|+|+|||||+|+||.+++.+|+++|++++|||++++|+
T Consensus 8 i~~~l~~~L~~A~~--~gk---------l~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk 76 (126)
T 2xzm_U 8 LNEVLAKVIKSSNC--QDA---------ISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKR 76 (126)
T ss_dssp HHHHHHHHHTTTTS--SSC---------EEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCS
T ss_pred HHHHHHHHHHHHHH--cCC---------EeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCH
Confidence 34567778888888 898 9999999999999999999999999999899999999999999999999999
Q ss_pred chhhhhhcC----------CC--eEEEEEeecCcc-cHHHHHHHHHHHH
Q 024981 181 ARLGVIVHK----------KT--ASVLCLTTVKNE-DKMEFSRILEAIK 216 (259)
Q Consensus 181 ~~LG~avGk----------k~--~a~Vaitd~g~e-Dk~~l~klve~i~ 216 (259)
.+||++||+ +. |+||+|+|+|+| ++++|+.|+|+|+
T Consensus 77 ~~LG~a~G~~k~d~~g~~rk~v~~s~vaI~d~g~~~~~~~~~~l~~~~~ 125 (126)
T 2xzm_U 77 ASLGEYLGHFTANAKGEIKKVKGCSSLAIRKYAPEITEDEKKIIEGALK 125 (126)
T ss_dssp HHHHHHHTCCCBCTTCCBSCCCCCCEEEESSCCTTCCHHHHHHHTTSCB
T ss_pred HHHHHHHCCCccccccCcCceeeEEEEEEEecCcccCHHHHHHHHHHhc
Confidence 999999997 54 999999999999 5559999998764
No 12
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.92 E-value=1.5e-24 Score=176.21 Aligned_cols=109 Identities=38% Similarity=0.570 Sum_probs=99.4
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 97 RPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|++..++.+++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++
T Consensus 8 ~p~~l~~~i~~~L~lA~k--agk---------l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 76 (124)
T 2fc3_A 8 VPEDLAEKAYEAVKRARE--TGR---------IKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVY 76 (124)
T ss_dssp CCHHHHHHHHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--hCC---------ccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 578888999999999998 888 999999999999999999999999999999899999999999999999
Q ss_pred eCCcchhhhhhcCC-CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 177 VKGKARLGVIVHKK-TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 177 v~sK~~LG~avGkk-~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
++|+.+||++||++ .+++|||+|.|.+ +..++.|.|.+++
T Consensus 77 v~sk~eLG~a~G~~~~~~~vaI~d~g~a-~~~~~~l~~~~~~ 117 (124)
T 2fc3_A 77 VPSKKRLGEAAGIEVAAASVAIIEPGDA-ETLVREIVEKVKE 117 (124)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEEECGGG-HHHHHHHHHHHHH
T ss_pred ECCHHHHHHHhCCCCCEEEEEEECcchH-HHHHHHHHHHHHH
Confidence 99999999999999 6999999999864 4456777776654
No 13
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.90 E-value=1.1e-23 Score=171.44 Aligned_cols=106 Identities=25% Similarity=0.411 Sum_probs=94.8
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 99 EDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 99 E~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
+...+|.+++|++|.+ +|+ +++|.++|+++|++|+++|||||+|+||++++.+|+.+|+++||||++++
T Consensus 13 ~~l~~kil~~L~lA~k--agk---------lv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~ 81 (122)
T 3o85_A 13 EELSLELLNLVKHGAS--LQA---------IKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHH--hCC---------EeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 3456789999999999 998 99999999999999999999999999999988999999999999999999
Q ss_pred CcchhhhhhcCCC-eEEEEEeecCcccHHHHHHHHHHHH
Q 024981 179 GKARLGVIVHKKT-ASVLCLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 179 sK~~LG~avGkk~-~a~Vaitd~g~eDk~~l~klve~i~ 216 (259)
|+.+||++||+++ +++++|+|.++ -+..+.++.+.|.
T Consensus 82 sk~eLG~a~Gk~~~vs~vaI~d~~~-~~~~~~~~~~~i~ 119 (122)
T 3o85_A 82 SKNALGRACNVSVPTIVASIGKHDA-LGNVVAEIVGKVE 119 (122)
T ss_dssp CHHHHHHHTTCSSCCSEEEECCCTT-THHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCEEEEEEEcccc-hHHHHHHHHHHHH
Confidence 9999999999997 67899999986 4555666665554
No 14
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.89 E-value=2.5e-23 Score=174.24 Aligned_cols=108 Identities=21% Similarity=0.400 Sum_probs=93.6
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe
Q 024981 98 PEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 98 PE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v 177 (259)
|+....+.+++|++|.+ +|+ ++.|+++|+++|++|+++|||||+|+||++++.+|+.+|+++||||+++
T Consensus 31 ~~~l~~ki~~~L~lA~k--agk---------l~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v 99 (144)
T 2jnb_A 31 DAHLTKKLLDLVQQSCN--YKQ---------LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFV 99 (144)
T ss_dssp CHHHHHHHHHHHHHHHH--TTC---------CCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHH--cCC---------ccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 34566788899999988 898 9999999999999999999999999999989999999999999999999
Q ss_pred CCcchhhhhhcCCCe-EEEEEeecCcccH-HHHHHHHHHHH
Q 024981 178 KGKARLGVIVHKKTA-SVLCLTTVKNEDK-MEFSRILEAIK 216 (259)
Q Consensus 178 ~sK~~LG~avGkk~~-a~Vaitd~g~eDk-~~l~klve~i~ 216 (259)
+|+.+||++||++++ +++||+|.+.+|- ..+.++.+.|.
T Consensus 100 ~sk~eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i~ 140 (144)
T 2jnb_A 100 RSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE 140 (144)
T ss_dssp SCSHHHHHHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 999999999999985 5899999876553 34455554443
No 15
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.88 E-value=3.3e-22 Score=165.12 Aligned_cols=97 Identities=24% Similarity=0.420 Sum_probs=89.1
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981 97 RPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~ 176 (259)
-|....++.+++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|++++.+|+.+|++++|||++
T Consensus 21 ~~~~l~~ki~~~L~lA~k--agk---------lv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~ 89 (135)
T 2aif_A 21 ASPDLNNKIINLVQQACN--YKQ---------LRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVF 89 (135)
T ss_dssp CCSHHHHHHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHHHHHHHHH--cCC---------cccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEE
Confidence 345567789999999998 998 999999999999999999999999999999889999999999999999
Q ss_pred eCCcchhhhhhcCCCe-EEEEEeecCccc
Q 024981 177 VKGKARLGVIVHKKTA-SVLCLTTVKNED 204 (259)
Q Consensus 177 v~sK~~LG~avGkk~~-a~Vaitd~g~eD 204 (259)
++|+.+||++||+++. +++||+|.+.+|
T Consensus 90 v~sk~eLG~a~G~~~~v~~vaI~d~~~s~ 118 (135)
T 2aif_A 90 VRSKVALGRACGVSRPVIAAAITSKDGSS 118 (135)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEECCTTCT
T ss_pred ECCHHHHHHHhCCCCcEEEEEEEcCCcHH
Confidence 9999999999999974 489999998655
No 16
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.87 E-value=1e-22 Score=160.08 Aligned_cols=89 Identities=25% Similarity=0.277 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 102 AAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 102 ~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
++|..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||+ ...+|+.+|++++|||++++|++
T Consensus 4 ~~ki~~~L~la~k--agk---------~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~ 71 (101)
T 3v7q_A 4 GMEWFPLLGLANR--ARK---------VVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRA 71 (101)
T ss_dssp CCTHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHH
T ss_pred cchhHHHhhhhhh--hhh---------cccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHH
Confidence 4688999999999 999 99999999999999999999999999997 55779999999999999999999
Q ss_pred hhhhhhcCCCeEEEEEeecCc
Q 024981 182 RLGVIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 182 ~LG~avGkk~~a~Vaitd~g~ 202 (259)
+||++||+..++++||+|.|.
T Consensus 72 eLG~A~Gk~~~~~~ai~D~g~ 92 (101)
T 3v7q_A 72 VLGRSIGKEARVVVAVTDQGF 92 (101)
T ss_dssp HHHHHTTSSCCSEEEECCHHH
T ss_pred HHHhhhCccceEEEEEeccHH
Confidence 999999999888999999884
No 17
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.87 E-value=2.4e-22 Score=157.61 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 103 AKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 103 eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
+|..++|++|++ +|+ +++|.++|+++|++|+++|||||+|+||+ .+.+|+.+|++++|||++++|+.+
T Consensus 4 ~ki~~~L~la~k--agk---------~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~e 71 (101)
T 3on1_A 4 AKWLSLLGLAAR--ARQ---------LLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQM 71 (101)
T ss_dssp CHHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHHHHH--HCC---------EeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHH
Confidence 589999999999 999 99999999999999999999999999996 567899999999999999999999
Q ss_pred hhhhhcCCCeEEEEEeecCcc
Q 024981 183 LGVIVHKKTASVLCLTTVKNE 203 (259)
Q Consensus 183 LG~avGkk~~a~Vaitd~g~e 203 (259)
||++||+..++++||+|.|..
T Consensus 72 LG~a~Gk~~~~~vai~d~g~a 92 (101)
T 3on1_A 72 LGRAIGKHERVVIGVKDAGFS 92 (101)
T ss_dssp HHHHTTSSCCSEEEECCHHHH
T ss_pred HHHHhCCcCeEEEEEECccHH
Confidence 999999998899999998843
No 18
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=4.5e-21 Score=152.82 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe-CCcc
Q 024981 103 AKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV-KGKA 181 (259)
Q Consensus 103 eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v-~sK~ 181 (259)
++..++|++|.+ +|+ ++.|.++|+++|++++++|||||+|+ |.+++.+|+.+|++++|||+++ +|+.
T Consensus 7 ~~i~~~L~la~k--agk---------l~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~ 74 (110)
T 3cpq_A 7 MDVNKAIRTAVD--TGK---------VILGSKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSL 74 (110)
T ss_dssp CHHHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHH
T ss_pred HHHHHHHHHHHH--cCC---------eeeCHHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHH
Confidence 578899999998 898 99999999999999999999999999 7788999999999999999887 9999
Q ss_pred hhhhhhcCCCe-EEEEEeecCccc
Q 024981 182 RLGVIVHKKTA-SVLCLTTVKNED 204 (259)
Q Consensus 182 ~LG~avGkk~~-a~Vaitd~g~eD 204 (259)
+||++||++++ +++||+|.|..+
T Consensus 75 eLG~a~G~~~~~s~vaI~d~g~a~ 98 (110)
T 3cpq_A 75 ELGAVCGKPFPVAALLVLDEGLSN 98 (110)
T ss_dssp HHHHHTTCSSCCSEEEEEECTTCC
T ss_pred HHHHHhCCccceEEEEEecCCHHH
Confidence 99999999964 699999999654
No 19
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.84 E-value=6.4e-21 Score=149.36 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe-CCcch
Q 024981 104 KKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV-KGKAR 182 (259)
Q Consensus 104 K~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v-~sK~~ 182 (259)
...++|++|.+ +|+ ++.|.++|+++|++|+++|||||+|+ |.+++.+|+.+|++++|||+++ +|+.+
T Consensus 3 ~i~~~L~la~k--agk---------l~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~vp~~~~~~s~~e 70 (101)
T 1w41_A 3 DFAFELRKAQD--TGK---------IVMGARKSIQYAKMGGAKLIIVARNA-RPDIKEDIEYYARLSGIPVYEFEGTSVE 70 (101)
T ss_dssp CHHHHHHHHHH--HSE---------EEESHHHHHHHHHHTCCSEEEEETTS-CHHHHHHHHHHHHHHTCCEEEESSCHHH
T ss_pred hHHHHHHHHHH--cCC---------EeECHHHHHHHHHcCCCcEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEecCCHHH
Confidence 46789999998 898 99999999999999999999999996 5588899999999999999885 99999
Q ss_pred hhhhhcCCC-eEEEEEeecCccc
Q 024981 183 LGVIVHKKT-ASVLCLTTVKNED 204 (259)
Q Consensus 183 LG~avGkk~-~a~Vaitd~g~eD 204 (259)
||++||+++ ++++||+|.|..+
T Consensus 71 LG~a~G~~~~~~~vai~d~g~a~ 93 (101)
T 1w41_A 71 LGTLLGRPHTVSALAVVDPGASR 93 (101)
T ss_dssp HHHHTTCSSCCCEEEEEECTTCC
T ss_pred HHHHhCCCCcEEEEEEecCCHHH
Confidence 999999996 5699999999654
No 20
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.83 E-value=5.4e-21 Score=150.98 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEE-EeCC
Q 024981 101 RAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYC-IVKG 179 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~-~v~s 179 (259)
.+++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|+ .+.+++.+|+.++|||+ +++|
T Consensus 6 ~~~~i~~~L~la~k--agk---------lv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s 73 (104)
T 4a18_G 6 TQDNIQSKLALVMR--SGK---------ATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGS 73 (104)
T ss_dssp --CHHHHHHHHHHH--HSE---------EEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSC
T ss_pred HHHHHHHHHHHHHH--hCC---------EeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCC
Confidence 35689999999999 898 99999999999999999999999999996 46789999999999999 6999
Q ss_pred cchhhhhhcCCC-eEEEEEeecCcccH
Q 024981 180 KARLGVIVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 180 K~~LG~avGkk~-~a~Vaitd~g~eDk 205 (259)
+.+||++||+.. +++|||+|.|..|.
T Consensus 74 ~~eLG~a~Gk~~~~~~vaI~D~G~a~~ 100 (104)
T 4a18_G 74 NVELGTACGKYHRCSTMAILDAGDSDI 100 (104)
T ss_dssp HHHHHHHTTCSSCCSEEEEEECSSCGG
T ss_pred HHHHHHHhCCccCEEEEEEeccchHHH
Confidence 999999999997 57899999997653
No 21
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.83 E-value=2.4e-20 Score=145.71 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe-CCcchh
Q 024981 105 KERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV-KGKARL 183 (259)
Q Consensus 105 ~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v-~sK~~L 183 (259)
..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+++ +++.+|+.+|++++|||+.+ +|+.+|
T Consensus 3 i~~~L~la~k--agk---------~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eL 70 (99)
T 3j21_Z 3 LAFELRKAME--TGK---------VVLGSNETIRLAKTGGAKLIIVAKNAPK-EIKDDIYYYAKLSDIPVYEFEGTSVEL 70 (99)
T ss_dssp HHHHHHHHHH--SSC---------EEESHHHHHHHHHHTCCSEEEEECCCCH-HHHHHHHHHHHHTTCCEEEECCCSCGG
T ss_pred HHHHHHHHHH--hCC---------EeECHHHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHH
Confidence 4578999998 899 9999999999999999999999999755 77889999999999998665 999999
Q ss_pred hhhhcCCC-eEEEEEeecCcccH
Q 024981 184 GVIVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 184 G~avGkk~-~a~Vaitd~g~eDk 205 (259)
|++||++. +++|||+|.|..|.
T Consensus 71 G~a~Gk~~~~~~vaI~d~g~a~~ 93 (99)
T 3j21_Z 71 GTLLGKPFVVASLAIVDPGESKI 93 (99)
T ss_dssp GGTTCSTTCSEEEEESSCSSCSH
T ss_pred HHHHCCCCCEEEEEEEccchHHH
Confidence 99999996 68999999997655
No 22
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.83 E-value=1.2e-20 Score=151.75 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe-CC
Q 024981 101 RAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV-KG 179 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v-~s 179 (259)
.+++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++| ..+.+|+.+|+.++|||+++ +|
T Consensus 10 ~~~~i~~~L~la~k--agk---------~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s 77 (112)
T 3iz5_f 10 SGENINNKLQLVMK--SGK---------YTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGN 77 (112)
T ss_dssp GGGHHHHHHHHHHT--TCE---------EEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCT
T ss_pred cHHHHHHHHHHHHH--hCC---------eeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCC
Confidence 46789999999998 898 9999999999999999999999999998 56788999999999999999 99
Q ss_pred cchhhhhhcCCC-eEEEEEeecCcccH
Q 024981 180 KARLGVIVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 180 K~~LG~avGkk~-~a~Vaitd~g~eDk 205 (259)
+.+||++||+.. +++|||+|.|..|.
T Consensus 78 ~~eLG~A~Gk~~~v~~vaI~D~G~a~~ 104 (112)
T 3iz5_f 78 NVDLGTACGKYYRVCCLSILDPGDSDI 104 (112)
T ss_dssp TCTHHHHHCTTCSSCEEEEECCSCCSH
T ss_pred HHHHHHHhCCccceEEEEEeccchHHH
Confidence 999999999985 68899999997655
No 23
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.83 E-value=1.2e-20 Score=143.50 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=65.4
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEe
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLT 198 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vait 198 (259)
++.|+++|+++|++|+++|||||+|+|| +++.+|+.+|++++|||++++|+.+||++||+++ ++++||+
T Consensus 12 ~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 12 IIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred eeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 9999999999999999999999999999 7889999999999999999999999999999997 5677775
No 24
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.82 E-value=1.5e-20 Score=148.75 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEE-EeCC
Q 024981 101 RAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYC-IVKG 179 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~-~v~s 179 (259)
..++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|+ .+.+++.+|+.++|||+ +++|
T Consensus 6 ~~~~i~~~L~la~k--agk---------~v~G~~~v~kai~~gkaklVilA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s 73 (105)
T 3u5e_c 6 SQESINQKLALVIK--SGK---------YTLGYKSTVKSLRQGKSKLIIIAANTPVL-RKSELEYYAMLSKTKVYYFQGG 73 (105)
T ss_dssp ---CHHHHHHHHHT--TSE---------EEESHHHHHHHHHTTCCSEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSC
T ss_pred HHHHHHHHHHHHHH--hCC---------eeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCC
Confidence 46789999999998 898 99999999999999999999999999985 56889999999999999 7999
Q ss_pred cchhhhhhcCCC-eEEEEEeecCcccH
Q 024981 180 KARLGVIVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 180 K~~LG~avGkk~-~a~Vaitd~g~eDk 205 (259)
+.+||++||+.. +++|+|+|.|..|.
T Consensus 74 ~~eLG~A~Gk~~~~~~vaI~D~G~a~~ 100 (105)
T 3u5e_c 74 NNELGTAVGKLFRVGVVSILEAGDSDI 100 (105)
T ss_dssp HHHHHHHTTCSSCCSEEEEEECCSCCT
T ss_pred HHHHHHHhCCcccEEEEEEeccchHHH
Confidence 999999999986 56899999998764
No 25
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.78 E-value=3e-19 Score=149.56 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhh--hcCCCEEEeCCc
Q 024981 103 AKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCR--KMEIPYCIVKGK 180 (259)
Q Consensus 103 eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~--~~~VPy~~v~sK 180 (259)
...+.+|..|.+ +|+ |+.|+++++++|++|+++|||||.|+||.+++.++++||+ +++|||+++.|+
T Consensus 26 ~aL~~vLk~A~~--~g~---------l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~ 94 (143)
T 3u5c_M 26 DALKVVLRTALV--HDG---------LARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADA 94 (143)
T ss_dssp HHHHHHHHHHHH--TTC---------EEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCH
T ss_pred HHHHHHHHHHHH--cCC---------EeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCH
Confidence 456778888988 888 9999999999999999999999999998899999999999 999999999999
Q ss_pred chhhhhhcCC------------CeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 181 ARLGVIVHKK------------TASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 181 ~~LG~avGkk------------~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
.+||+|||.. .|+|++|+|.|.+.+ +++-|.|+++.
T Consensus 95 keLG~a~Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~-~~~~l~~~~~~ 142 (143)
T 3u5c_M 95 KQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETD-ELSMIMEHFSQ 142 (143)
T ss_dssp HHHHHHSSCCCCSSSSCCSCCCCCSCEEESCCCCCSH-HHHHHHHHHHC
T ss_pred HHHhHHhCcCccccCCCccccceeEEEEEcccchhhH-HHHHHHHHHhc
Confidence 9999999952 288999999997544 56766666553
No 26
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.73 E-value=1.3e-18 Score=142.10 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEE-EeCCc
Q 024981 102 AAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYC-IVKGK 180 (259)
Q Consensus 102 ~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~-~v~sK 180 (259)
.++..++|++|++ +|+ +++|.++|+++|++|+++|||||+|++| .++.+++.+|...++|+. +++|+
T Consensus 12 ~~~i~~~L~lA~k--aGk---------lv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk 79 (125)
T 3vi6_A 12 LESINSRLQLVMK--SGK---------YVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNN 79 (125)
T ss_dssp SSCSHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCH
T ss_pred HHHHHHHHHHHHH--hCC---------eeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCH
Confidence 4678999999999 898 9999999999999999999999999999 577889999887777654 69999
Q ss_pred chhhhhhcCCCeE-EEEEeecCcccHHHHHHHHHHHHHhhhhhhhhh
Q 024981 181 ARLGVIVHKKTAS-VLCLTTVKNEDKMEFSRILEAIKANFNDKYDEH 226 (259)
Q Consensus 181 ~~LG~avGkk~~a-~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~ 226 (259)
.+||.+||+..++ ++||+|.|..|. +..++ +.+++.-.-.
T Consensus 80 ~eLG~A~Gk~~~v~~vaI~D~G~a~~--l~~~~----~~~~~~~~~~ 120 (125)
T 3vi6_A 80 IELGTACGKYYRVCTLAIIDPGDSDI--IRSMP----EQTGEKGAPH 120 (125)
T ss_dssp HHHHHHTTCSSCCCEEEEEECTTCCC--C------------------
T ss_pred HHHHHHhCCcccEEEEEEeCchhHHH--HHHHH----HhhcccCCCc
Confidence 9999999999754 899999997544 33333 4455554433
No 27
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=136.13 Aligned_cols=107 Identities=17% Similarity=0.273 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHH--HhcCccEEEEeCCCC-chhhHHhHH-----HHhhhcCC
Q 024981 101 RAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLI--EQNKAQLVVIAHDVD-PVELVVWLP-----ALCRKMEI 172 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~I--ekkKAkLVVIA~Dvd-P~elv~~Lp-----aLC~~~~V 172 (259)
-..+.+.+|..|.. .++ ++.|+++++++| +++.+.|||||.|+| |..+..|+| +||.+++|
T Consensus 19 l~~al~evLk~A~~--~~~---------l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~I 87 (165)
T 2kg4_A 19 VGDALEEVLSKALS--QRT---------ITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDI 87 (165)
T ss_dssp HHHHHHHHHHHHHH--HTC---------EEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH--cCC---------eeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCC
Confidence 35667778888876 666 999999999999 999999999999997 666555555 99999999
Q ss_pred CEEEeCCcchhhhhhcC---------------CCeEEEEEeecCccc--HHHHHHHHHHHHHh
Q 024981 173 PYCIVKGKARLGVIVHK---------------KTASVLCLTTVKNED--KMEFSRILEAIKAN 218 (259)
Q Consensus 173 Py~~v~sK~~LG~avGk---------------k~~a~Vaitd~g~eD--k~~l~klve~i~~n 218 (259)
||++|.|+.+||+++|. ..|+||+|+|.|.+. ..+++.|++.+++.
T Consensus 88 p~i~V~s~k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~s~~~~a~~~l~~~~~e~ 150 (165)
T 2kg4_A 88 NILRVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQWKDPALSQLICFCRES 150 (165)
T ss_dssp CEEEESCHHHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSCCCCCHHHHHHHHHHHHH
T ss_pred CEEEECCHHHHHHHHCCcccccccccccCCCcccceEEEEeccccccccchHHHHHHHHHHHh
Confidence 99999999999999995 138999999999764 25688888887653
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.17 E-value=2.6e-10 Score=95.55 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhc--CccEEEEeCCCCc------hhhHHhHHHHhhhcCCCEEEe
Q 024981 106 ERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQN--KAQLVVIAHDVDP------VELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 106 ~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~Iekk--KAkLVVIA~DvdP------~elv~~LpaLC~~~~VPy~~v 177 (259)
+..|..|.. .+- |..|+.++.+++.+. .|.|+|+|.|++. ...+..+.+||.+++||++.|
T Consensus 14 qeVLk~Al~--~dg---------L~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkV 82 (146)
T 3cg6_A 14 HELLLSAQR--QGC---------LTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRV 82 (146)
T ss_dssp HHHHHHHHH--HTC---------EEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHH--hCC---------ccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEe
Confidence 445666665 444 999999999999997 9999999999982 244556899999999999999
Q ss_pred CCcchhhhhhcC------C-CeEEEEEeecCccc--HHHHHHHHHHHHHhh
Q 024981 178 KGKARLGVIVHK------K-TASVLCLTTVKNED--KMEFSRILEAIKANF 219 (259)
Q Consensus 178 ~sK~~LG~avGk------k-~~a~Vaitd~g~eD--k~~l~klve~i~~ny 219 (259)
.+..+||+++|+ . .|+||.|+|.|.++ ..+++.|.+++++..
T Consensus 83 dd~kkLgew~Gk~d~~g~pr~~sCvvV~d~g~e~~~s~al~~l~~y~~e~~ 133 (146)
T 3cg6_A 83 GDVQRLAAIVGSDEEGGAPGDLHCILISNPNEDTWKDPALEKLSLFCEESR 133 (146)
T ss_dssp CCHHHHHHHC----------CCSEEEEECCC---CCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHhCCcCCCCCCCCCEEEEEecCCcccccCHHHHHHHHHHHHhc
Confidence 999999999994 1 28899999999762 346888888877643
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=98.98 E-value=3.4e-09 Score=90.40 Aligned_cols=102 Identities=16% Similarity=0.246 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhc--CccEEEEeCCCC-chh-----hHHhHHHHhhhcCCCEEEe
Q 024981 106 ERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQN--KAQLVVIAHDVD-PVE-----LVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 106 ~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~Iekk--KAkLVVIA~Dvd-P~e-----lv~~LpaLC~~~~VPy~~v 177 (259)
+..|..|.. .+- |..|+.++.+++.+. .|.|+|+|.|++ +-+ .+..+.+||.+++||++.|
T Consensus 35 qeVLk~Al~--~dg---------L~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV 103 (167)
T 3ffm_A 35 HELLLSAQR--QGC---------LTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRV 103 (167)
T ss_dssp HHHHHHHHH--TTC---------EEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHH--hCC---------ccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEe
Confidence 345555655 454 999999999999995 899999999985 222 3556889999999999999
Q ss_pred CCcchhhhhhcCC-------CeEEEEEeecCccc--HHHHHHHHHHHHHh
Q 024981 178 KGKARLGVIVHKK-------TASVLCLTTVKNED--KMEFSRILEAIKAN 218 (259)
Q Consensus 178 ~sK~~LG~avGkk-------~~a~Vaitd~g~eD--k~~l~klve~i~~n 218 (259)
.+..+||+++|+. .|+||.|+|.+++. ..+|++|....++.
T Consensus 104 ~d~kkLgew~G~~~~~~k~~~csCVlVtd~ge~s~k~~AL~~l~~fCees 153 (167)
T 3ffm_A 104 GDVQRLAAIVGAGEEAGAPGDLHCILISNPNEDAWKDPALEKLSLFCEES 153 (167)
T ss_dssp SCHHHHHHHHTTSCCSSSCSCCSEEEEECSSSSCCCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHhCcCCCCCCCCccEEEEECCCCcccccCHHHHHHHHHHHHh
Confidence 9999999999952 28999999999754 15788888776653
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=92.17 E-value=0.58 Score=39.17 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=50.5
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCch--------------------------------------------hhHHhHH
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPV--------------------------------------------ELVVWLP 164 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~--------------------------------------------elv~~Lp 164 (259)
.++|.++|.++++.|-+..++|..|..-. .++.+|.
T Consensus 47 ~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~L~ 126 (166)
T 3ir9_A 47 VAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFS 126 (166)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHHHHH
T ss_pred EEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHHHHHHH
Confidence 89999999999999999999999887432 3566888
Q ss_pred HHhhhcCCCEEEeCCcchhhhhh
Q 024981 165 ALCRKMEIPYCIVKGKARLGVIV 187 (259)
Q Consensus 165 aLC~~~~VPy~~v~sK~~LG~av 187 (259)
..++.+|.-+.+|.+..+-|.-+
T Consensus 127 e~~~~~G~~v~ivs~~~eeG~ql 149 (166)
T 3ir9_A 127 ELADKSNAKVVFVSTDFDEGSQL 149 (166)
T ss_dssp HHHHHTTCEEEEECSCSHHHHHH
T ss_pred HHHHhcCCEEEEECCCChhHHHH
Confidence 99999999999999988877644
No 31
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=88.25 E-value=2.7 Score=37.65 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=49.8
Q ss_pred ceEecchHHHHHHHHhc-CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeecC
Q 024981 127 IVVKYGLNHVTYLIEQN-KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTVK 201 (259)
Q Consensus 127 ~~l~~G~n~Vtk~Iekk-KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~g 201 (259)
.+++.|.+.|..+++.+ ...-|+++.+.... ..+..+|...+||+..+ +.+.|.++.+..+ -.++|+....
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~---~~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGTPLD---PALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTSCCC---HHHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECC
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCccCc---HHHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecC
Confidence 47999999999999987 56778888876543 33567788899999887 5567777776543 3456665543
No 32
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=84.87 E-value=1.7 Score=36.16 Aligned_cols=46 Identities=26% Similarity=0.254 Sum_probs=37.8
Q ss_pred chHHHHHHHHhcCccEEEEeCC---CCc-hhhHHhHHHHhhhcCCCEEEe
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHD---VDP-VELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~D---vdP-~elv~~LpaLC~~~~VPy~~v 177 (259)
|..++..+|.+|++.|||--.| ..| ..=...|...|-.++|||+.-
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 119 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATN 119 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESS
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeC
Confidence 6779999999999999999998 444 223345899999999999763
No 33
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=84.15 E-value=6.3 Score=36.32 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=63.2
Q ss_pred hHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH---cCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHH
Q 024981 85 LASNLFKMLLKYRPEDRAAKKERLLKKAQAEA---EGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVV 161 (259)
Q Consensus 85 ~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~a---aGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~ 161 (259)
...++++.+..---+++..+...++..-.... .|+ .++|..+|.++++.|.+..++|..| . +++.
T Consensus 262 g~~E~l~~~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~---------a~yG~~eV~~Al~~GaVetLlv~d~--r-d~~~ 329 (373)
T 3agk_A 262 GLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAKGTGM---------IVYGEKDVEAALEMGAVKTLLIHES--R-EDLE 329 (373)
T ss_dssp HHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHTTCCC---------EEESHHHHHHHHHTTCEEEEEEETT--C-TTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---------EeeCHHHHHHHHHhCCccEEEEeCC--h-hHHH
Confidence 34455554333223445555555554432211 244 8899999999999999999999988 3 5678
Q ss_pred hHHHHhhhcCCCEEEeCCcchhhh
Q 024981 162 WLPALCRKMEIPYCIVKGKARLGV 185 (259)
Q Consensus 162 ~LpaLC~~~~VPy~~v~sK~~LG~ 185 (259)
.|...+..+|--+.++.+..+-|.
T Consensus 330 ~L~e~a~~~G~~V~ivs~~~~~g~ 353 (373)
T 3agk_A 330 EWVEKAKSSGAQVIVVPESLAEAE 353 (373)
T ss_dssp HHHHHHTTTTCEEEEECTTSTTHH
T ss_pred HHHHHHHHcCCEEEEECCCCccHH
Confidence 899999999999999999877773
No 34
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=83.09 E-value=1.7 Score=34.70 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=55.0
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCC----Cc---hhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeec
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDV----DP---VELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTV 200 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~Dv----dP---~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~ 200 (259)
..+|..+|.++++.|-+..++|..|. +| ..++. |...++.+|.-+.++.+..+-|.-+ +..-.+.||.-.
T Consensus 39 ~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL-~~~gGIaAiLRy 115 (124)
T 1x52_A 39 AFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL-SQLTGVAAILRF 115 (124)
T ss_dssp EEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH-HTTTTEEEEESS
T ss_pred EEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH-hcCCCEEEEEec
Confidence 88999999999999999999999874 22 12445 7888899999999999998888666 333455666554
No 35
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=82.78 E-value=5.4 Score=38.14 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=55.1
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCc---------------------------------------------hhhHHhH
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDP---------------------------------------------VELVVWL 163 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP---------------------------------------------~elv~~L 163 (259)
.++|..+|.++++.|-+..++|..|.+- ..++.+|
T Consensus 306 a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l 385 (441)
T 3e20_C 306 YCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWL 385 (441)
T ss_dssp CCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------------CCEEHHHHH
T ss_pred EEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhhHHHHH
Confidence 7899999999999999999999987740 1355678
Q ss_pred HHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeec
Q 024981 164 PALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTV 200 (259)
Q Consensus 164 paLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~ 200 (259)
..+++.+|.-+.++.+..+-|.-+-+..-...||+-.
T Consensus 386 ~e~a~~~G~~v~~vs~~~~eG~ql~~~fgGIaaiLRy 422 (441)
T 3e20_C 386 AEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRY 422 (441)
T ss_dssp HHHGGGGSCCEEEECTTSHHHHHHHHTSTTEEEECSS
T ss_pred HHHHHHcCCEEEEECCCCHHHHHHHHcCCcEEEEEec
Confidence 9999999999999999988886552222234444443
No 36
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=81.44 E-value=19 Score=33.92 Aligned_cols=98 Identities=13% Similarity=0.249 Sum_probs=69.0
Q ss_pred ChhhHHHHHHHhhcCCcccHHHHHHHHHHHHHHH-HcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCC-----
Q 024981 82 DKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAE-AEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD----- 155 (259)
Q Consensus 82 d~~~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~-aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~Dvd----- 155 (259)
+.+...++++.+..---+++..+-.+++..-... +.+ +...++|..+|.++++.|.+..++|..|..
T Consensus 260 ~~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l~~d-------~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~ 332 (437)
T 1dt9_A 260 GENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQD-------TGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYV 332 (437)
T ss_dssp TTHHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHHHSS-------SCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCcEEecHHHHHHHHHhCCccEEEEecCcccceEE
Confidence 4455667777765555556666655665543321 111 123889999999999999999999998865
Q ss_pred ---c-----------------------------------hhhHHhHHHHhhhcCCCEEEeCCcchhhhh
Q 024981 156 ---P-----------------------------------VELVVWLPALCRKMEIPYCIVKGKARLGVI 186 (259)
Q Consensus 156 ---P-----------------------------------~elv~~LpaLC~~~~VPy~~v~sK~~LG~a 186 (259)
+ .+++.+|...+..+|-.+.++.+..+-|.-
T Consensus 333 ~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q 401 (437)
T 1dt9_A 333 LHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQ 401 (437)
T ss_dssp C---------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHH
T ss_pred EEcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHHH
Confidence 2 023556888899999999999999877754
No 37
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=81.38 E-value=2.2 Score=36.56 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=37.8
Q ss_pred chHHHHHHHHhcCccEEEEeCC---CCc-hhhHHhHHHHhhhcCCCEEEeC
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHD---VDP-VELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~D---vdP-~elv~~LpaLC~~~~VPy~~v~ 178 (259)
|..++..+|.+|++.|||--.| ..| ..=...|..+|-.++|||+.--
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~Tnl 136 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITR 136 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSH
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCH
Confidence 7779999999999999999988 333 2223458999999999998643
No 38
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=81.31 E-value=1.7 Score=35.43 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=36.8
Q ss_pred cchHHHHHHHHhcCccEEEEeCC--C-Cc--hhhHHhHHHHhhhcCCCEEE
Q 024981 131 YGLNHVTYLIEQNKAQLVVIAHD--V-DP--VELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~D--v-dP--~elv~~LpaLC~~~~VPy~~ 176 (259)
-|..++..+|.+|++.|||--.| - .| .+. ..|...|-.++|||+.
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~-~~IrR~A~~~~IP~~T 110 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDV-QALLRVCDVHGVPLAT 110 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCS-HHHHHHHHHHTCCEEC
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchH-HHHHHHHHHcCCCeEc
Confidence 47789999999999999999988 2 22 233 4489999999999975
No 39
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=80.97 E-value=2.7 Score=38.97 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=50.6
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCc---hhhHHhHHHHhhhcCCCEEEeCCcchhhhhh
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDP---VELVVWLPALCRKMEIPYCIVKGKARLGVIV 187 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP---~elv~~LpaLC~~~~VPy~~v~sK~~LG~av 187 (259)
..+|..+|.++++.|-+.-++|..|..- .+.+..|...++.+|--+.++.+..+-|.-+
T Consensus 281 a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL 342 (357)
T 3j15_A 281 VAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL 342 (357)
T ss_dssp EEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred EEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh
Confidence 8899999999999999999999877543 3467789999999999999999887777644
No 40
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=80.31 E-value=5.7 Score=37.01 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=51.3
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCc-----hhhHHhHHHHhhhcCCCEEEeCCcchhhhhh
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDP-----VELVVWLPALCRKMEIPYCIVKGKARLGVIV 187 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP-----~elv~~LpaLC~~~~VPy~~v~sK~~LG~av 187 (259)
...+|.++|.++++.|-+..++|..|..- ...+.+|...++.+|--+.++.+..+-|.-+
T Consensus 285 ~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL 349 (364)
T 3obw_A 285 LVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFEL 349 (364)
T ss_dssp SEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH
T ss_pred cEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhh
Confidence 38899999999999999999999988743 2356778999999999999999988777654
No 41
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=80.04 E-value=3.1 Score=38.74 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=58.9
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchh----hHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcc
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVE----LVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNE 203 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~e----lv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~e 203 (259)
.++|.++|.++++.|-+.-++|..|..-.+ .+.+|...++.+|--+.++.+..+-|.-+ ...-.+.||.-..-.
T Consensus 266 a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL-~~lGGIaAiLRy~~~ 343 (352)
T 3oby_A 266 VAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL-MSLGGIAALLRFNVK 343 (352)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTSEEEEESSCCC
T ss_pred EEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH-hcCCCEEEEEecCCc
Confidence 889999999999999999999998764322 56778999999999999999997777655 333356677765543
No 42
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=79.97 E-value=6.3 Score=36.43 Aligned_cols=111 Identities=13% Similarity=0.141 Sum_probs=75.2
Q ss_pred cCChhhHHHHHHHh--hcCCcccHHHHHHHHHHHHHHH-HcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCC-
Q 024981 80 TLDKNLASNLFKML--LKYRPEDRAAKKERLLKKAQAE-AEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD- 155 (259)
Q Consensus 80 ~ld~~~a~~l~kl~--~kyrPE~k~eK~~rLl~~A~k~-aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~Dvd- 155 (259)
..+.+...++++.. ..---+++..+-.+++..-.+. +.++ +++|.++|.++++.|-+..++|..|..
T Consensus 223 ~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d~---------~~YG~~eV~~Ale~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 223 RTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKDM---------GVYGRDQTESALQMGALSDLIITDEMFR 293 (347)
T ss_dssp SSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTTC---------EEESHHHHHHHHHTTCEEEEEEEHHHHT
T ss_pred CCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------EEEcHHHHHHHHHcCCCeEEEEeccccc
Confidence 34455555665554 3223344444555555543321 1223 889999999999999999999999875
Q ss_pred chhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecC
Q 024981 156 PVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVK 201 (259)
Q Consensus 156 P~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g 201 (259)
..+ +.+|...|+.+|--+.++.+..+-|.-+ ...-...||+-..
T Consensus 294 r~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL-~~lGGIAaiLRy~ 337 (347)
T 2qi2_A 294 TED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV-KKFGGFAGILRYR 337 (347)
T ss_dssp SHH-HHHHHHHHHHHTCEEEEECTTSHHHHHH-HHTTSEEEEECSC
T ss_pred chh-HHHHHHHHHHcCCEEEEECCCCcchHHH-HhcCCEEEEEecc
Confidence 333 6778999999999999999998888666 3333456666543
No 43
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=77.45 E-value=13 Score=30.14 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCC-C-CCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHH
Q 024981 87 SNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGK-T-VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLP 164 (259)
Q Consensus 87 ~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk-~-~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~Lp 164 (259)
..|..=++. -|+++.+-..+.||-=+.+--.. . .....+. -..++++++++...-.|+|-.+++.. ....+.
T Consensus 9 ~~l~~g~~G-~p~lkPDEqr~yLGtfrERV~lalt~~q~~~~~----~~~~~~~~l~~~~~~~l~ing~l~~~-~~~~Yi 82 (133)
T 2ohw_A 9 LYLQQGMYG-PLETKPDERHLFLGSLRERVVLALTKGQVLRSK----PYKEAEHELKNSHNVTLLINGELQYQ-SYSSYI 82 (133)
T ss_dssp HHHHTTCCS-CCSSHHHHHHHTTTCCGGGEEEEEEHHHHTSSS----CCHHHHHHHHTCSSEEEEEETTSCHH-HHHHHH
T ss_pred HHHHHhcCC-CCCCCHHHHHHhccchhhhhheeeeHHHHhchh----HHHHHHHHHhhCCCcEEEEcCCCCHH-HHHHHH
Confidence 344444454 77777776677766211100000 0 0001111 14667889999999999999999885 667799
Q ss_pred HHhhhcCCCEEEeCC
Q 024981 165 ALCRKMEIPYCIVKG 179 (259)
Q Consensus 165 aLC~~~~VPy~~v~s 179 (259)
.+|.++||||.+|.+
T Consensus 83 klA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 83 QMASRYGVPFKIVSD 97 (133)
T ss_dssp HHHHHTTCCEEEECC
T ss_pred HHHHHcCCCeEEecC
Confidence 999999999999987
No 44
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=76.09 E-value=7.6 Score=34.08 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=51.3
Q ss_pred ceEecchHHHHHHHHhc--CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC-eEEEEEeec
Q 024981 127 IVVKYGLNHVTYLIEQN--KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT-ASVLCLTTV 200 (259)
Q Consensus 127 ~~l~~G~n~Vtk~Iekk--KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~-~a~Vaitd~ 200 (259)
.+++.|.+.|..+++.+ ...-|+++.+..... ...+..+|+..+||+..+. .+.|-++.+..+ -.++|+...
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~i~v~~v~-~~~l~~ls~~~~~qGv~a~~~~ 86 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGREDKR-LLPLIHALESQGVVIQLAN-RQYLDEKSDGAVHQGIIARVKP 86 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTT-THHHHHHHHHHTCEEEEEC-SHHHHHTTTSCCCTTEEEEECC
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCccchh-HHHHHHHHHHCCCcEEEeC-HHHHHHHhCCCCCcEEEEEEec
Confidence 36899999999999987 577788888764422 2346677888999987765 467777776543 345555554
No 45
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=73.47 E-value=5.1 Score=30.58 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=43.0
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+.|.+.....+++..+..|+||..-...+....+-..|..+|+.+.++.+-.++
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~ 104 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDL 104 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHH
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHH
Confidence 346888889999999999999976544445566888999999999999886654
No 46
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=71.16 E-value=10 Score=33.78 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=40.8
Q ss_pred eEecchHHHHHHHHhc-CccEEEEeCCCCchhhHHhHHHHhhhcC-CCEEEeCCcchhhhhhcCC
Q 024981 128 VVKYGLNHVTYLIEQN-KAQLVVIAHDVDPVELVVWLPALCRKME-IPYCIVKGKARLGVIVHKK 190 (259)
Q Consensus 128 ~l~~G~n~Vtk~Iekk-KAkLVVIA~DvdP~elv~~LpaLC~~~~-VPy~~v~sK~~LG~avGkk 190 (259)
+++.|.+.|..+++.+ .+.-|+++.+..... ...+..+|...+ +|+..+. .+.|-++.+..
T Consensus 29 f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~~~~v~~v~-~~~l~~ls~~~ 91 (274)
T 1ipa_A 29 FLIEGAREIERALQAGIELEQALVWEGGLNPE-EQQVYAALGRVGRLALLEVS-EAVLKKLSVRD 91 (274)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTCCCHH-HHHHHHCC-----CEEEEEC-HHHHHHHCCSS
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEEcCcccch-HHHHHHHHHhcCCccEEEeC-HHHHHHHhCCC
Confidence 7899999999999987 577788888765422 233555677778 9886655 56677766654
No 47
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=70.68 E-value=11 Score=34.86 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=55.8
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCc------hhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecC
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDP------VELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVK 201 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP------~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g 201 (259)
..+|..+|.++++.|.+..++|..|..- ...+..|...++.+|-.+.++.+..+-|.-+ +..-...||.-..
T Consensus 273 a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL-~~~gGIaAiLRy~ 350 (358)
T 3agj_B 273 VAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL-VSFGGVIALLRYP 350 (358)
T ss_dssp EEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH-GGGTTEEEEESSC
T ss_pred EEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh-hcCCcEEEEEecc
Confidence 8899999999999999999999987421 1235678889999999999999998888555 3323456665543
No 48
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=69.85 E-value=4.8 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCccEEEEeCCCC--chhhHHhHHHHhhhcCCCEEE
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVD--PVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~Dvd--P~elv~~LpaLC~~~~VPy~~ 176 (259)
.++...|+++++.|||-..|-. +..=...+...|-.++|||+.
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 5699999999999999988752 222234589999999999975
No 49
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=65.16 E-value=19 Score=33.54 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=55.1
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCC----c--hhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeec
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVD----P--VELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTV 200 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~Dvd----P--~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~ 200 (259)
...+|..+|.++++.|-+..++|..|.- + ...+..|...++.+|--+.++.+..+-|.-+ ...-.+.||+-.
T Consensus 297 ~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL-~~lgGIAAiLRy 374 (386)
T 2vgn_A 297 KAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL-DQLTGIACILKY 374 (386)
T ss_dssp SEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTTEEEEESS
T ss_pred cEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH-hccCcEEEEEec
Confidence 3899999999999999999999999852 2 1125678888999999999999998877555 222244555543
No 50
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=62.39 E-value=25 Score=32.87 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=52.5
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCC----ch---hhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEee
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVD----PV---ELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~Dvd----P~---elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd 199 (259)
..+|..+|.++++.|-+.-++|..|.- +. .+ ..|...++.+|--+.++.+..+-|.-+ ..--.+.||.-
T Consensus 292 a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~-~~L~e~~~~~Gg~V~ivs~~~~~G~qL-~~lgGiaAiLR 367 (390)
T 3mca_B 292 AWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKW-VSLVEGVKEINCPVYIFSSLHESGKQL-DLLSGIAAILT 367 (390)
T ss_dssp EEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHH-HHHHHHHHHTTCCEEEECTTSHHHHHH-HHTTSEEEEBS
T ss_pred EEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHH-HHHHHHHHhcCCEEEEECCCCCchhhh-hcCCcEEEEEe
Confidence 889999999999999999999997763 11 23 257788999999999999987777655 22224555553
No 51
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=58.96 E-value=44 Score=24.09 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=34.7
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCC-chhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVD-PVELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~Dvd-P~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
.....+....++.....+||+-.+.. ..+-...+..+.+..++|++++.+...
T Consensus 40 ~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 40 FDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQD 93 (140)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred ECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC
Confidence 45567788888888899999987663 223223334444336899988765443
No 52
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=56.96 E-value=29 Score=25.44 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=35.2
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhh---hcCCCEEEeCCcc
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCR---KMEIPYCIVKGKA 181 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~---~~~VPy~~v~sK~ 181 (259)
......+....++.....+||+-.+....+-...+..+-+ ..++|++++.+..
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 36 FVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp EESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred EECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 3445677888888899999999776644333333444443 4579998876543
No 53
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=56.02 E-value=58 Score=25.44 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=40.1
Q ss_pred HHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 138 YLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 138 k~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
.....|..+.|+=+.| +.++.. |...++..|||++.+.+.-. .=+--.+.||+|| |+...+.++++.
T Consensus 48 ~W~~~g~~KiVlk~~~--e~el~~-l~~~a~~~gl~~~~i~DAG~--Tei~~gs~Tvlai---gP~~~~~vd~it 114 (120)
T 1xty_A 48 EWLHQGQPKIIVKVNS--LDEIIS-RAKKAETMNLPFSIIEDAGK--TQLEPGTITCLGI---GPAPENLVDSIT 114 (120)
T ss_dssp HHHHTTCCEEEEEESS--HHHHHH-HHHHHHHTTCCEEEEECCSS--SSSCTTCEEEEEE---EEEEHHHHHHHH
T ss_pred HHHHCCCcEEEEecCC--HHHHHH-HHHHHHHCCCCEEEEEcCCc--cccCCCCeEEEEe---ccCCHHHHHHHh
Confidence 3445677778877776 345544 77888899999987765411 0011135788887 333444444443
No 54
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=55.57 E-value=17 Score=34.29 Aligned_cols=78 Identities=9% Similarity=0.132 Sum_probs=45.2
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhh----cCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIV----HKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~av----Gkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.+.|||+|.|.+. +-..+-..|+++|||+..+.+ .+|+..+ .......|||+..|. ....-..|-+.|.+.+
T Consensus 72 ~~~lVi~at~~~~--~n~~i~~~a~~~~i~vn~~d~-~e~~~~~~pa~~~~~~l~iaIsT~Gk-sp~la~~ir~~ie~~l 147 (457)
T 1pjq_A 72 SCWLAIAATDDDT--VNQRVSDAAESRRIFCNVVDA-PKAASFIMPSIIDRSPLMVAVSSGGT-SPVLARLLREKLESLL 147 (457)
T ss_dssp TCSEEEECCSCHH--HHHHHHHHHHHTTCEEEETTC-TTSSSEECCEEEEETTEEEEEECTTS-CHHHHHHHHHHHHHHS
T ss_pred CccEEEEcCCCHH--HHHHHHHHHHHcCCEEEECCC-cccCceEeeeEEEeCCeEEEEECCCC-ChHHHHHHHHHHHHhc
Confidence 4779999988753 234467889999999755554 4555332 122235788885553 3322233335555555
Q ss_pred hhhhhh
Q 024981 220 NDKYDE 225 (259)
Q Consensus 220 nd~y~e 225 (259)
-+.|++
T Consensus 148 ~~~~~~ 153 (457)
T 1pjq_A 148 PQHLGQ 153 (457)
T ss_dssp CTTHHH
T ss_pred chhHHH
Confidence 444443
No 55
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=54.86 E-value=57 Score=23.56 Aligned_cols=88 Identities=9% Similarity=-0.014 Sum_probs=47.9
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhh---hcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccH
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCR---KMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDK 205 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~---~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk 205 (259)
......+....++.....+||+-.+....+-...+..+.+ ..++|++.+.+.........--...+.++.... -+.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp-~~~ 114 (142)
T 3cg4_A 36 SADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKP-FDN 114 (142)
T ss_dssp EESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESS-CCH
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCC-CCH
Confidence 4455678888899999999999877644333333444443 356888876554332211111112344444443 344
Q ss_pred HHHHHHHHHHHH
Q 024981 206 MEFSRILEAIKA 217 (259)
Q Consensus 206 ~~l~klve~i~~ 217 (259)
..|...++.+-.
T Consensus 115 ~~l~~~i~~~~~ 126 (142)
T 3cg4_A 115 EDLIEKTTFFMG 126 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555544433
No 56
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=54.04 E-value=46 Score=25.84 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=39.7
Q ss_pred HHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
........|..+.|+=+.| +.++.. |...++..|+|++.+.+.-.- =+--.+.+|+|| |+...+.++++.
T Consensus 40 ~~~~W~~~g~~kivlk~~~--e~~l~~-l~~~a~~~gl~~~~i~DAG~T--ei~~gt~Tvlai---gP~~~~~vd~it 109 (115)
T 2zv3_A 40 AVDEWLREGQKKVVVKVNS--EKELID-IYNKARSEGLPCSIIRDAGHT--QLEPGTLTAVAI---GPEKDEKIDKIT 109 (115)
T ss_dssp HHHHHHHTTCCEEEEEESS--HHHHHH-HHHHHHHHTCCEEEEEECC---------EEEEEEE---EEECHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEecCC--HHHHHH-HHHHHHHcCCCEEEEEeCCce--ecCCCCEEEEEe---CcCCHHHHHHHh
Confidence 3444455677777777776 345533 777888999999877543110 011134688887 333444444443
No 57
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=52.12 E-value=70 Score=25.07 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 136 VTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
+......|..+.|+=+.| +.++.. |...++..|+|++.+.+.-. .=+--.+.||+|| |+...+.++++.
T Consensus 47 ~~~W~~~g~~Kvvlk~~~--e~el~~-l~~~a~~~gl~~~~i~DAG~--Tei~~gt~Tvlai---gP~~~~~vd~it 115 (121)
T 1wn2_A 47 FEAWFREGQKKVVVKVES--EEELFK-LKAEAEKLGLPNALIRDAGL--TEIPPGTVTVLAV---GPAPEEIVDKVT 115 (121)
T ss_dssp HHHHHHTTCCEEEEEESS--HHHHHH-HHHHHHHTTCCEEEEECTTC--TTSCTTCEEEEEE---EEEEHHHHHHHH
T ss_pred HHHHHHCCCcEEEEecCC--HHHHHH-HHHHHHHCCCCEEEEEcCCc--cccCCCCEEEEEe---ccCCHHHHHHhc
Confidence 344455677778777776 345543 77788899999988765411 0011234788887 344444444443
No 58
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=51.17 E-value=48 Score=23.87 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=35.6
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhh---hcCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCR---KMEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~---~~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+....+-...+..+.+ ..++|++.+.+...
T Consensus 39 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 39 IAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp EECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred EECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCC
Confidence 4455677888888889999999877644333333444443 46789887765443
No 59
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=51.01 E-value=23 Score=31.65 Aligned_cols=71 Identities=8% Similarity=0.000 Sum_probs=42.2
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhc---CCCEEEeCCcchhhh-----hhcCCCe-EEEEEeecCcccHHHHHHHHHH
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKM---EIPYCIVKGKARLGV-----IVHKKTA-SVLCLTTVKNEDKMEFSRILEA 214 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~---~VPy~~v~sK~~LG~-----avGkk~~-a~Vaitd~g~eDk~~l~klve~ 214 (259)
.+.|||.|.|.+ ++-..+-.+|+.. +||+..+.+ .+|+. .+-+. . ..|||+..|. ....-..|-+.
T Consensus 106 ~adlViaat~d~--~~n~~I~~~Ar~~f~~~i~VNvvd~-pel~~f~~Pa~~~~g-~~l~IaIST~Gk-sp~lA~~ir~~ 180 (274)
T 1kyq_A 106 AWYIIMTCIPDH--PESARIYHLCKERFGKQQLVNVADK-PDLCDFYFGANLEIG-DRLQILISTNGL-SPRFGALVRDE 180 (274)
T ss_dssp CEEEEEECCSCH--HHHHHHHHHHHHHHCTTSEEEETTC-GGGBSEECCEEEEET-TTEEEEEEESSS-CHHHHHHHHHH
T ss_pred CeEEEEEcCCCh--HHHHHHHHHHHHhcCCCcEEEECCC-cccCeeEeeeEEEeC-CCEEEEEECCCC-CcHHHHHHHHH
Confidence 578999999854 2345578899999 998876654 34443 22222 3 5788886664 23222333344
Q ss_pred HHHhh
Q 024981 215 IKANF 219 (259)
Q Consensus 215 i~~ny 219 (259)
|.+.|
T Consensus 181 ie~~l 185 (274)
T 1kyq_A 181 IRNLF 185 (274)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 60
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=50.87 E-value=18 Score=31.27 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=44.8
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhh----cCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIV----HKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~av----Gkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.+.|||.|.|.+. +-..+-.+|+ .|||+..+.+ .+++..+ .......|||...|.. ...-..|-+.|.+.|
T Consensus 91 ~adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD~-p~~~~f~~Paiv~rg~l~iaIST~G~s-P~la~~iR~~ie~~l 165 (223)
T 3dfz_A 91 NVFFIVVATNDQA--VNKFVKQHIK-NDQLVNMASS-FSDGNIQIPAQFSRGRLSLAISTDGAS-PLLTKRIKEDLSSNY 165 (223)
T ss_dssp SCSEEEECCCCTH--HHHHHHHHSC-TTCEEEC------CCSEECCEEEEETTEEEEEECTTSC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeCC-cccCeEEEeeEEEeCCEEEEEECCCCC-cHHHHHHHHHHHHHc
Confidence 4789999988654 4445677898 9999766655 3444322 2222467888877743 322234446666666
Q ss_pred hhhhhhh
Q 024981 220 NDKYDEH 226 (259)
Q Consensus 220 nd~y~e~ 226 (259)
-+.|+++
T Consensus 166 p~~~~~~ 172 (223)
T 3dfz_A 166 DESYTQY 172 (223)
T ss_dssp CTHHHHH
T ss_pred cHHHHHH
Confidence 5555544
No 61
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=50.00 E-value=79 Score=24.52 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
........|..+.|+=+.| +.++.. |...++..|||++.+.+.-.- =+--.+.||+|| |+...+.++++.
T Consensus 42 ~~~~W~~~g~~kiVlk~~~--e~~l~~-l~~~a~~~gl~~~~v~DAG~T--ei~~gt~Tvlai---gP~~~~~vd~it 111 (117)
T 1rlk_A 42 VFNEWYDEGQRKIVVKVND--LDEIME-IKRMADSMGIVNEIVQDRGYT--QVEPGTITCIGL---GPDEEEKLDKIT 111 (117)
T ss_dssp HHHHHHHTTCCEEEEEESS--HHHHHH-HHHHHHHHTCCEEEEECCCSS--SSSCCCEEEEEE---EEEEHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEecCC--HHHHHH-HHHHHHHCCCCEEEEEeCCcc--CcCCCCEEEEEe---CcCCHHHHHHHc
Confidence 3444455677778877776 334544 777888899999887654110 011124788887 333444444443
No 62
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=48.68 E-value=37 Score=31.47 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=53.4
Q ss_pred ccEEEEeCC-CCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhh
Q 024981 145 AQLVVIAHD-VDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKY 223 (259)
Q Consensus 145 AkLVVIA~D-vdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y 223 (259)
+.++|+-.+ -|.|+ .+|-.+|++.|.|.+.+.+-++|-..-= .....|+||---|--....+++++.++..+...-
T Consensus 226 vD~miVVGg~nSSNT--~rL~eia~~~g~~ty~Ie~~~el~~~wl-~g~~~VGITAGASTP~~lieeVi~~l~~~~~~~v 302 (328)
T 3szu_A 226 AEVVLVVGSKNSSNS--NRLAELAQRMGKRAFLIDDAKDIQEEWV-KEVKCVGVTAGASAPDILVQNVVARLQQLGGGEA 302 (328)
T ss_dssp CSEEEEECCTTCHHH--HHHHHHHHHTTCEEEEESSGGGCCHHHH-TTCSEEEEEECTTCCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCCCchH--HHHHHHHHHhCCCEEEeCChHHCCHHHh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhCCCce
Confidence 445554444 45555 4589999999999999999999864221 1245788887766555566888888877654444
Q ss_pred hhh
Q 024981 224 DEH 226 (259)
Q Consensus 224 ~e~ 226 (259)
+++
T Consensus 303 ~~~ 305 (328)
T 3szu_A 303 IPL 305 (328)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 63
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=48.00 E-value=82 Score=24.42 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhh-hhcCCCeEEEEEeecCcccHHHHHHHH
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGV-IVHKKTASVLCLTTVKNEDKMEFSRIL 212 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~-avGkk~~a~Vaitd~g~eDk~~l~klv 212 (259)
.....-..|..++|+-+.| +.++.. |...++..|||++.+-+. |+ -+--.+.||+|| |+...+.++++.
T Consensus 42 ~~~~W~~~g~~KVvlk~~~--e~~l~~-l~~~a~~~gl~~~~i~DA---G~Tqi~~gt~Tvlai---gP~~~~~vd~it 111 (117)
T 1q7s_A 42 MLKQWEYCGQPKVVVKAPD--EETLIA-LLAHAKMLGLTVSLIQDA---GRTQIAPGSQTVLGI---GPGPADLIDKVT 111 (117)
T ss_dssp HHHHHHHTTCCEEEEEESS--HHHHHH-HHHHHHHTTCCEEEEEEC---SSSSEEEEEEEEEEE---EEEEHHHHHHHH
T ss_pred HHHHHHhCCCeeEEEEcCC--HHHHHH-HHHHHHHCCCCEEEEEEC---CCcccCCCCeEEEEe---ccCCHHHHHHhc
Confidence 3444555677777777777 445544 778888999998776653 21 000123678887 344444444443
No 64
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=46.53 E-value=61 Score=23.65 Aligned_cols=87 Identities=10% Similarity=-0.050 Sum_probs=47.5
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcch---hhhhhcCCCeEEEEEeecCcccHH
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKAR---LGVIVHKKTASVLCLTTVKNEDKM 206 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~---LG~avGkk~~a~Vaitd~g~eDk~ 206 (259)
.....+....++.....+||+-.+....+-...+..+.+...+|++++.+... .-.++... +..++... -+..
T Consensus 34 ~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g---a~~~l~KP-~~~~ 109 (136)
T 2qzj_A 34 AYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSG---GDDYLIKP-LNLE 109 (136)
T ss_dssp ESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTT---CCEEEESS-CCHH
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcC---CcEEEECC-CCHH
Confidence 33446677888888899999876654333334445555445899988755443 22333222 22333332 3444
Q ss_pred HHHHHHHHHHHhhh
Q 024981 207 EFSRILEAIKANFN 220 (259)
Q Consensus 207 ~l~klve~i~~nyn 220 (259)
.|...++.+-..++
T Consensus 110 ~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 110 ILYAKVKAILRRMN 123 (136)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555544443
No 65
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=46.52 E-value=39 Score=26.90 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHhcCccEEEEeCCCCch-----hhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPV-----ELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~-----elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
.+...++..++.+||++.|+... +...++..| ...++|++++.+.-+
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l-~~~~~pv~~v~GNHD 74 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRIL-SEAHLPTAYVPGPQD 74 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHH-GGGCSCEEEECCTTS
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHH-HhcCCcEEEECCCCC
Confidence 33444555578899999997432 222333333 445789888877643
No 66
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=45.88 E-value=31 Score=29.36 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=33.4
Q ss_pred hHHHHHHHHh--cCccEEEEeCCCCch-------hhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 133 LNHVTYLIEQ--NKAQLVVIAHDVDPV-------ELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 133 ~n~Vtk~Iek--kKAkLVVIA~DvdP~-------elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+..+...+.+ .++.+||++.|+-.. .+...+..+.+..++|++.+.+.-+.
T Consensus 53 l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD~ 112 (330)
T 3ib7_A 53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDD 112 (330)
T ss_dssp HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTSC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCCC
Confidence 4455566665 688999999997431 22333444445569999988877653
No 67
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=43.84 E-value=95 Score=22.87 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=33.0
Q ss_pred ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE-eCCcchhhhhhcCCCeEEEEEeec
Q 024981 145 AQLVVIAHDVDPVELVVWLPALCRKMEIPYCI-VKGKARLGVIVHKKTASVLCLTTV 200 (259)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~-v~sK~~LG~avGkk~~a~Vaitd~ 200 (259)
+.+|.|..|.++.+. +..+++++++++-. .....+|.+..|....-++.|+|.
T Consensus 62 ~~vv~v~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~ 115 (153)
T 2l5o_A 62 FQVLAVAQPIDPIES---VRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGK 115 (153)
T ss_dssp EEEEEEECTTSCHHH---HHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEEEEECS
T ss_pred eEEEEEecCCCCHHH---HHHHHHHcCCCceEEcCchHHHHHHcCCCccCeEEEECC
Confidence 556666666555432 56677888988764 445667888888765333345543
No 68
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=43.38 E-value=92 Score=22.62 Aligned_cols=88 Identities=9% Similarity=0.091 Sum_probs=46.4
Q ss_pred EecchHHHHHHHHh-cCccEEEEeCCCCc-hhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHH
Q 024981 129 VKYGLNHVTYLIEQ-NKAQLVVIAHDVDP-VELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKM 206 (259)
Q Consensus 129 l~~G~n~Vtk~Iek-kKAkLVVIA~DvdP-~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~ 206 (259)
......+....+++ ....+||+-.+... .+-...+..+-+..++|++++.+.........--...+.++.... -+..
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP-~~~~ 112 (140)
T 3h5i_A 34 IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKS-ATEQ 112 (140)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETT-CCHH
T ss_pred EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCC-CCHH
Confidence 34455677777877 67899999876632 223333444444578999887655432211111112344455443 3444
Q ss_pred HHHHHHHHHHH
Q 024981 207 EFSRILEAIKA 217 (259)
Q Consensus 207 ~l~klve~i~~ 217 (259)
.|...++.+-.
T Consensus 113 ~l~~~i~~~l~ 123 (140)
T 3h5i_A 113 VLITIVEMALR 123 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 69
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=41.54 E-value=97 Score=28.24 Aligned_cols=71 Identities=6% Similarity=0.040 Sum_probs=47.0
Q ss_pred CccEEEEeCC-CCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 144 KAQLVVIAHD-VDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 144 KAkLVVIA~D-vdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
++.++|+-.+ -|.|+ .+|-.+|++.|.|.+.+.+-++|-..-=. ....|+||---+--....+++++.++.
T Consensus 209 ~~D~miVVGg~nSSNT--~rL~eia~~~~~~ty~Ie~~~el~~~wl~-~~~~VGITAGASTP~~li~eVi~~l~~ 280 (297)
T 3dnf_A 209 EVDVMIIIGGKNSGNT--RRLYYISKELNPNTYHIETAEELQPEWFR-GVKRVGISAGASTPDWIIEQVKSRIQE 280 (297)
T ss_dssp GSSEEEEESCTTCHHH--HHHHHHHHHHCSSEEEESSGGGCCGGGGT-TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hCCEEEEECCCCCchh--HHHHHHHHhcCCCEEEeCChHHCCHHHhC-CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 3555555544 45555 45889999999999999999998642211 245788887766544444566655543
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=41.09 E-value=42 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=24.0
Q ss_pred CccEEEEeCCCCch----hhHHhHHHHhhh-----cCCCEEEeCCcchhhh
Q 024981 144 KAQLVVIAHDVDPV----ELVVWLPALCRK-----MEIPYCIVKGKARLGV 185 (259)
Q Consensus 144 KAkLVVIA~DvdP~----elv~~LpaLC~~-----~~VPy~~v~sK~~LG~ 185 (259)
.+..+|+.-|++.. .+..++..+... .++|++++.+|.+|-.
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 36677777777543 233344444332 5789999998888743
No 71
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=40.89 E-value=71 Score=23.67 Aligned_cols=52 Identities=6% Similarity=0.090 Sum_probs=30.3
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC-CcchhhhhhcCCCeEEEEEee
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK-GKARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~-sK~~LG~avGkk~~a~Vaitd 199 (259)
.+.+|.|..|-++.+ +..+++++++++-.+. ....+....|....-++.|+|
T Consensus 59 ~v~vv~v~~d~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid 111 (151)
T 2f9s_A 59 GVEIVAVNVGESKIA----VHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLIN 111 (151)
T ss_dssp TEEEEEEEESCCHHH----HHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEEC
T ss_pred CeEEEEEECCCCHHH----HHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEEEC
Confidence 356666666655533 4456677787775443 355777777766433333443
No 72
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=40.21 E-value=92 Score=22.64 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=36.3
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhh---hcCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCR---KMEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~---~~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+....+-...+..+.+ ..++|++.+.+...
T Consensus 37 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 37 QCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred EeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCC
Confidence 3455677788888889999999877654443344445544 46799988765443
No 73
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=38.76 E-value=1.2e+02 Score=22.75 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=28.7
Q ss_pred HhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC-CcchhhhhhcCC
Q 024981 141 EQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK-GKARLGVIVHKK 190 (259)
Q Consensus 141 ekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~-sK~~LG~avGkk 190 (259)
....+.+|.|+.| ++.. +...++++++++.++. ...++.+..|..
T Consensus 66 ~~~~~~vv~vs~d-~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (163)
T 3gkn_A 66 DKAGAKILGVSRD-SVKS----HDNFCAKQGFAFPLVSDGDEALCRAFDVI 111 (163)
T ss_dssp HHTTCEEEEEESS-CHHH----HHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred HHCCCEEEEEeCC-CHHH----HHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence 3344678888887 4433 3456778888886544 455677777653
No 74
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=38.31 E-value=58 Score=30.74 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=58.5
Q ss_pred ceEecchHHHHHHHHh----cCccEEEEeC---CCCch--hhHHhHHHHhhhcCCCEEEeCCcchhhhh-hcC-CCeEEE
Q 024981 127 IVVKYGLNHVTYLIEQ----NKAQLVVIAH---DVDPV--ELVVWLPALCRKMEIPYCIVKGKARLGVI-VHK-KTASVL 195 (259)
Q Consensus 127 ~~l~~G~n~Vtk~Iek----kKAkLVVIA~---DvdP~--elv~~LpaLC~~~~VPy~~v~sK~~LG~a-vGk-k~~a~V 195 (259)
..+.+|++.|..++.= ..|.|||..+ |.... ....-+-.+|++++||++.+-+....+.- +.. -..++.
T Consensus 266 a~l~~Gi~~v~~~~~l~~~l~~ADLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~~~~~~~~~~Gi~a~f 345 (383)
T 3cwc_A 266 AQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVF 345 (383)
T ss_dssp CEEECHHHHHHHHTTHHHHHHHCSEEEECCEESCC----CHHHHHHHHHHHHTTCCEEEEEEECC--------CCCSEEE
T ss_pred CEEccHHHHHHHHhChHhhhcCCCEEEECCCCCcCcCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCChHHHHhcCCcEEE
Confidence 3589999999986632 3589999988 66542 22334667899999999977665554421 111 234566
Q ss_pred EEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 024981 196 CLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKW 230 (259)
Q Consensus 196 aitd~g~eDk~~l~klve~i~~nynd~y~e~~~~w 230 (259)
.|++.... |++.++.-..|..+.-+.+.|.|
T Consensus 346 ~i~~~~~~----l~~al~~a~~~L~~~a~~i~r~~ 376 (383)
T 3cwc_A 346 SVIYTICT----LEDALKNASENVRMTARNVAATL 376 (383)
T ss_dssp EEECCCTT----STTHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655432 33333334455555555666666
No 75
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=37.72 E-value=1.2e+02 Score=22.40 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=28.3
Q ss_pred EEEEeCCCCchhhHHhHHHHhhhcCCCEEE-eCCcchhhhhhcCCCeEEEEEee
Q 024981 147 LVVIAHDVDPVELVVWLPALCRKMEIPYCI-VKGKARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~~~~VPy~~-v~sK~~LG~avGkk~~a~Vaitd 199 (259)
+.||+-++++.+. ..+...++.+++++.. ......+....|....-.+.|+|
T Consensus 62 ~~~v~v~~d~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid 114 (154)
T 3kcm_A 62 FRMLCVSIDEGGK-VAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVID 114 (154)
T ss_dssp EEEEEEECCTTHH-HHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEEEEC
T ss_pred eEEEEEEcCCcch-HHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEEEEC
Confidence 3444444444222 2356777888888754 34455677777766433333443
No 76
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=36.59 E-value=1.2e+02 Score=21.81 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=33.8
Q ss_pred EecchHHHHHHHHh----------cCccEEEEeCCCCchhhHHhHHHHhhh---cCCCEEEeCCcc
Q 024981 129 VKYGLNHVTYLIEQ----------NKAQLVVIAHDVDPVELVVWLPALCRK---MEIPYCIVKGKA 181 (259)
Q Consensus 129 l~~G~n~Vtk~Iek----------kKAkLVVIA~DvdP~elv~~LpaLC~~---~~VPy~~v~sK~ 181 (259)
......+....++. ....+||+-.+....+-...+..+.+. .++|++++.+..
T Consensus 37 ~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 37 RCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp EECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred EECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 34455777788886 778999998776443333334444443 578998776544
No 77
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=36.34 E-value=88 Score=27.76 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=42.7
Q ss_pred eEecchHHHHHHHHhcC-ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCC-C-eEEEEEee
Q 024981 128 VVKYGLNHVTYLIEQNK-AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKK-T-ASVLCLTT 199 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkK-AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk-~-~a~Vaitd 199 (259)
+++.|.+.|..+++.+. +.-|+++.+..... .+..++...++|+..+. .+.|.++.+.. + -.++|+..
T Consensus 41 f~veG~~~V~eal~~~~~i~~l~~~~~~~~~~---~~~~l~~~~~~~v~~v~-~~~l~~ls~~~~~~qGv~a~~~ 111 (287)
T 1x7o_A 41 FLVMGVRPISLAVEHGWPVRTLLYDGQRELSK---WARELLRTVRTEQIAMA-PDLLMELGEKNEAPPEVVAVVE 111 (287)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEESSCCCCH---HHHHHHHHSCSEEEEEC-HHHHTTSSCSSSCCCSEEEEEE
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEecCcccch---hHHHHHHHcCCcEEEeC-HHHHHHHhCCCCCCCcEEEEEe
Confidence 78999999999999875 67788887764311 12333444457876654 55666666554 3 23444443
No 78
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=36.31 E-value=1.7e+02 Score=23.83 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=60.7
Q ss_pred hHHHHHHHHhcC-ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhc---------CCCeEEEEEeecCc
Q 024981 133 LNHVTYLIEQNK-AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVH---------KKTASVLCLTTVKN 202 (259)
Q Consensus 133 ~n~Vtk~IekkK-AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avG---------kk~~a~Vaitd~g~ 202 (259)
+.++...+++-. .-+|+=..+++-.++. .|..-|++.|+-|..+++. -+..|+. .+..++++|+
T Consensus 10 v~el~~~l~~~~~~v~v~~~~gltv~~~~-~LR~~lr~~g~~~~V~KNt-L~~~Al~~~~~~~~~~l~G~~a~~fs---- 83 (173)
T 2j01_J 10 LATLKENLERAQGSFFLVNYQGLPAKETH-ALRQALKQNGARLFVAKNT-LIRLALKELGLPELDGLQGPSAVVFY---- 83 (173)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCCHHHHH-HHHHHHHHCCcEEEEehhH-HHHHHHhcCCCCccccccCCEEEEEe----
Confidence 355566666666 4444445555555554 4788888888877666542 2233332 1235677777
Q ss_pred ccHHHHHHHHHHHHHhhh-hhhhhhhhccCCCCCCchhHHHHHHH
Q 024981 203 EDKMEFSRILEAIKANFN-DKYDEHRKKWGGGIMGSKSQAKTKAK 246 (259)
Q Consensus 203 eDk~~l~klve~i~~nyn-d~y~e~~~~wgg~~lg~ks~~~~~k~ 246 (259)
+|..+..+++..+...+. +...=.---.+|.+++...+..++++
T Consensus 84 ~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~L 128 (173)
T 2j01_J 84 EDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAEL 128 (173)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcC
Confidence 366666777765543221 33322223446667777666666654
No 79
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=36.04 E-value=1e+02 Score=24.43 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEE
Q 024981 138 YLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCL 197 (259)
Q Consensus 138 k~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vai 197 (259)
.....|..+.|+=+.| +.++.. |...++..|+|++.|.+.-.-- +--.++||+||
T Consensus 42 ~W~~~G~~Kvvlk~~~--e~el~~-L~~~a~~~gl~~~~I~DAG~Te--i~pgt~Tvlai 96 (123)
T 1rzw_A 42 KWLDEGQKKVVLKVKS--LEELLG-IKHKAESLGLVTGLVQDAGLTE--VPPGTITAVVI 96 (123)
T ss_dssp HTGGGCSSEEEEECSC--HHHHHH-HHHHHHHTTCCEEEECCTTCCS--CSTTSCEEEEE
T ss_pred HHHHCCCcEEEEecCC--HHHHHH-HHHHHHHCCCCEEEEECCCCcc--cCCCCEEEEEe
Confidence 3344677777777766 445544 7788889999998886533210 11124688886
No 80
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.91 E-value=1.3e+02 Score=22.16 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=35.7
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh-cCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK-MEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~-~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+....+-...+..+.+. .++|++++.+...
T Consensus 43 ~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 43 FARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPD 97 (153)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCC
T ss_pred EECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCC
Confidence 44556778888899999999998776543333333333332 4789888776554
No 81
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=34.99 E-value=59 Score=30.66 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=18.5
Q ss_pred hHHHHHHHHhcCccEEEEeCCCC
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvd 155 (259)
...++..+...++.+|||+.|+-
T Consensus 41 l~~lv~~~~~~~~D~VliaGDLf 63 (417)
T 4fbw_A 41 FNEILEIARERDVDMILLGGDIF 63 (417)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCB
T ss_pred HHHHHHHHHhcCCCEEEEcCccc
Confidence 45667777778899999999983
No 82
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=34.52 E-value=43 Score=27.57 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=44.5
Q ss_pred cEEEEeCCCCch-hhHHhHHHHh----hhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhh
Q 024981 146 QLVVIAHDVDPV-ELVVWLPALC----RKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFN 220 (259)
Q Consensus 146 kLVVIA~DvdP~-elv~~LpaLC----~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nyn 220 (259)
.+|+|.-|++.. ++...+...+ .-.++|..++.+.. |..+...+ .+-..+..+...|.++++.+...|.
T Consensus 74 ~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~d--G~~v~~~t----y~p~~~~~~~~~f~~~L~~v~~~~~ 147 (173)
T 3ira_A 74 AFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPG--KKPFFAGT----YIPKNTRFNQIGMLELVPRIKEIWE 147 (173)
T ss_dssp HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTT--SCEEEEES----SCCSSCBTTBCCHHHHHHHHHHHHH
T ss_pred cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCC--CCceeeee----eCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 588888898853 3333332222 34689998766533 22221100 0001122244568999999999999
Q ss_pred hhhhhhh
Q 024981 221 DKYDEHR 227 (259)
Q Consensus 221 d~y~e~~ 227 (259)
++.+++.
T Consensus 148 ~~~~~~~ 154 (173)
T 3ira_A 148 QQHEEVL 154 (173)
T ss_dssp HSHHHHH
T ss_pred HHHHHHH
Confidence 9888776
No 83
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=33.47 E-value=88 Score=24.11 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=32.9
Q ss_pred eEec-chHHH--HHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 128 VVKY-GLNHV--TYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 128 ~l~~-G~n~V--tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.++. |..+- ..+++--.+..+||+.+..|.+- +..+|+++|||++.+.
T Consensus 55 l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~~~---i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 55 ALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQL---VLTKAEERGVPVILTG 105 (139)
T ss_dssp EEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCHH---HHHHHHHHTCCEEECS
T ss_pred EEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCCHH---HHHHHHHCCCeEEEEC
Confidence 3444 76543 33333145888999999887654 3488999999998765
No 84
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=32.85 E-value=1.5e+02 Score=21.97 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=23.3
Q ss_pred ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhh
Q 024981 145 AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIV 187 (259)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~av 187 (259)
+.+|.|..|-++.. +....+++++++..+.+..++....
T Consensus 68 v~~v~v~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (165)
T 3or5_A 68 FTFVGIAVNEQLPN----VKNYMKTQGIIYPVMMATPELIRAF 106 (165)
T ss_dssp EEEEEEECSCCHHH----HHHHHHHHTCCSCEEECCHHHHHHH
T ss_pred eEEEEEECCCCHHH----HHHHHHHcCCCCceEecCHHHHHHH
Confidence 44555555544433 3455677788877666666776666
No 85
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.25 E-value=1.3e+02 Score=21.32 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=34.5
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCC-----chhhHHhHHHHhhh-cCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVD-----PVELVVWLPALCRK-MEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~Dvd-----P~elv~~LpaLC~~-~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+.. ..+-...+..+.+. .++|++++.+...
T Consensus 32 ~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 32 TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 445567888889999999999987654 32222333334333 4799988765443
No 86
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=32.00 E-value=1.7e+02 Score=22.21 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=27.6
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC-CcchhhhhhcCC
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK-GKARLGVIVHKK 190 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~-sK~~LG~avGkk 190 (259)
.+.+|.|+.| ++.+ +...++++++++..+. ...++....|..
T Consensus 63 ~v~vv~vs~d-~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 63 DVVVIGVSSD-DINS----HKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp CEEEEEEESC-CHHH----HHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred CCEEEEEeCC-CHHH----HHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 3566666666 3322 4567788899987655 456777777765
No 87
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=31.55 E-value=2.1e+02 Score=23.28 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=49.4
Q ss_pred ccccCChh-hHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecc-hHHHHH--HHHh--cCccEEEE
Q 024981 77 FTKTLDKN-LASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYG-LNHVTY--LIEQ--NKAQLVVI 150 (259)
Q Consensus 77 f~~~ld~~-~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G-~n~Vtk--~Iek--kKAkLVVI 150 (259)
|.++++.+ +...+-.+-.+++..+..+...+.+.. -|. +-.+-.|| .+.+.- ++.. ..+..|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-----~~~-----~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~v 76 (215)
T 1sur_A 7 ALNELPKVDRILALAETNAELEKLDAEGRVAWALDN-----LPG-----EYVLSSSFGIQAAVSLHLVNQIRPDIPVILT 76 (215)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-----CCS-----EEEEECCCCTTHHHHHHHHHHHSTTCEEEEE
T ss_pred hhhcccCCCcHHHHHHHHHHhccCCHHHHHHHHHHH-----cCC-----CEEEEecCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 34455554 223444455555555555554444321 232 22233344 443322 2222 24555555
Q ss_pred eCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 151 AHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 151 A~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
=+...+.+...++..+|+++|||+.++..
T Consensus 77 d~g~~~~e~~~~v~~~~~~~gi~~~v~~~ 105 (215)
T 1sur_A 77 DTGYLFPETYRFIDELTDKLKLNLKVYRA 105 (215)
T ss_dssp ECSCBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 55555556678899999999999987754
No 88
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=31.35 E-value=61 Score=30.32 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=59.4
Q ss_pred HcCCC----CCCCCCceEecc---hHHHHHHHHhcC-ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhh-
Q 024981 116 AEGKT----VESKKPIVVKYG---LNHVTYLIEQNK-AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVI- 186 (259)
Q Consensus 116 aaGk~----~~~~~p~~l~~G---~n~Vtk~IekkK-AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~a- 186 (259)
|+|++ ..++||..-+.| +.+++..+.+-. -.++|+.+- ....+..+|..+....++.+.++.-.+.||.+
T Consensus 19 AaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~-~~~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~ 97 (501)
T 3st8_A 19 AAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGH-DHQRIAPLVGELADTLGRTIDVALQDRPLGTGH 97 (501)
T ss_dssp ECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECT-THHHHHHHHHHHHHHHTSCCEEEECSSCCCHHH
T ss_pred CCcCcccCCCCCCHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCC-CHHHHHHHHHHHHHhcCCcEEEEEcCCCCCcHH
Confidence 47777 236788877777 466666666544 445555442 24466777877788888888777777777742
Q ss_pred -h-------cCCC--eEEEEEeecCcccHHHHHHHHHHHHH
Q 024981 187 -V-------HKKT--ASVLCLTTVKNEDKMEFSRILEAIKA 217 (259)
Q Consensus 187 -v-------Gkk~--~a~Vaitd~g~eDk~~l~klve~i~~ 217 (259)
+ .... ...|..-|..--+...+..|++..+.
T Consensus 98 Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~ 138 (501)
T 3st8_A 98 AVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRA 138 (501)
T ss_dssp HHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhh
Confidence 2 1121 12233333333445556777766554
No 89
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=31.13 E-value=62 Score=29.23 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=30.3
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCch------hh---HHhHHHHhhhcCCCEEEeCCcch
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPV------EL---VVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~------el---v~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
+..+...+...++.+||+|.|+-.. ++ ...|..|+ ..++|++.+.+.-+
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~-~~~~pv~~v~GNHD 106 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH-ENNIKVYIVAGNHE 106 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH-HTTCEEEECCCGGG
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEcCCCC
Confidence 4556666677789999999997321 11 22232232 23899888876543
No 90
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.04 E-value=85 Score=22.28 Aligned_cols=54 Identities=7% Similarity=0.072 Sum_probs=30.6
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh-cCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK-MEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~-~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+....+-...+..+.+. .++|++.+.+...
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~ 90 (130)
T 3eod_A 36 LAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATEN 90 (130)
T ss_dssp EESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 34455777888888889999997655332222223333322 3688887665443
No 91
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=30.97 E-value=2.1e+02 Score=25.72 Aligned_cols=107 Identities=9% Similarity=0.111 Sum_probs=55.6
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc-hhhhhhcCCCe-EEEEEeecCcccHHHHHHHHHHHHHhh-
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA-RLGVIVHKKTA-SVLCLTTVKNEDKMEFSRILEAIKANF- 219 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~-~LG~avGkk~~-a~Vaitd~g~eDk~~l~klve~i~~ny- 219 (259)
++-+|+||...-. ..++-.-|+++|+.++.+.+.. .+. .+...+ .++.+ +. ..|...+-..+..+...+
T Consensus 4 ~~k~l~Il~~~~~----~~~i~~aa~~lG~~vv~v~~~~~~~~--~~~~~~d~~~~~-~~-~~d~~~~~~~~~~~~~~~~ 75 (425)
T 3vot_A 4 RNKNLAIICQNKH----LPFIFEEAERLGLKVTFFYNSAEDFP--GNLPAVERCVPL-PL-FEDEEAAMDVVRQTFVEFP 75 (425)
T ss_dssp CCCEEEEECCCTT----CCHHHHHHHHTTCEEEEEEETTSCCC--CSCTTEEEEEEE-CT-TTCHHHHHHHHHHHHHHSC
T ss_pred CCcEEEEECCChh----HHHHHHHHHHCCCEEEEEECCCcccc--cCHhhccEEEec-CC-CCCHHHHHHHHHHhhhhcC
Confidence 4456777776532 2456678999999988775433 221 111222 23333 22 234433333333222211
Q ss_pred -------hh----hhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcC
Q 024981 220 -------ND----KYDEHRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS 259 (259)
Q Consensus 220 -------nd----~y~e~~~~wgg~~lg~ks~~~~~k~~k~~~~e~~~k~~ 259 (259)
.| .-..++.+.| +.|+...+-..-..|...++++.+.|
T Consensus 76 id~V~~~~e~~~~~~a~l~e~lg--lpg~~~~~~~~~~dK~~~k~~l~~~g 124 (425)
T 3vot_A 76 FDGVMTLFEPALPFTAKAAEALN--LPGLPFTTMENCRNKNKTRSILQQNG 124 (425)
T ss_dssp CSEEECCCGGGHHHHHHHHHHTT--CSSCCHHHHHHHHCHHHHHHHHHHTT
T ss_pred CCEEEECCchhHHHHHHHHHHcC--CCCCCHHHHHHhhCHHHHHHHHHHCC
Confidence 11 1233455554 55766655556667888888877654
No 92
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=30.65 E-value=88 Score=25.59 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=18.2
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCc
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDP 156 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP 156 (259)
...+...++..++.+||++.|...
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCC
Confidence 355566666678999999999854
No 93
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=30.46 E-value=2.8e+02 Score=24.38 Aligned_cols=138 Identities=12% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCccccccc--ccCChhhHHHHHHHhhcCC-------------c-ccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecch
Q 024981 70 VPPALNQFT--KTLDKNLASNLFKMLLKYR-------------P-EDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGL 133 (259)
Q Consensus 70 vpp~inqf~--~~ld~~~a~~l~kl~~kyr-------------P-E~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~ 133 (259)
+||.+--|+ ..+|.+.-.++.+.+-.-- + =|..| +.+++..+.+.++|+ -|.++=.|.
T Consensus 17 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~gr-----vpViaGvg~ 90 (301)
T 1xky_A 17 ATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEE-KVALYRHVVSVVDKR-----VPVIAGTGS 90 (301)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHTTS-----SCEEEECCC
T ss_pred EEeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhCCC-----ceEEeCCCC
Confidence 356666665 3677777666666543211 1 12333 356666666655554 455555555
Q ss_pred HHHHHHHHh-------cCccEEEEeCC---CCchhhHHhHHHHhhhcCCCEEEeC---------CcchhhhhhcCCCeEE
Q 024981 134 NHVTYLIEQ-------NKAQLVVIAHD---VDPVELVVWLPALCRKMEIPYCIVK---------GKARLGVIVHKKTASV 194 (259)
Q Consensus 134 n~Vtk~Iek-------kKAkLVVIA~D---vdP~elv~~LpaLC~~~~VPy~~v~---------sK~~LG~avGkk~~a~ 194 (259)
+.+..+|+. |=-.++++..- .++.++..|+.++|+.-++|++++. +-+.+.++.. ...+
T Consensus 91 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~pnI 168 (301)
T 1xky_A 91 NNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE--IENI 168 (301)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT--STTE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc--CCCE
Confidence 444444432 32334444442 3667899999999999999998754 2233445543 2357
Q ss_pred EEEeecCcccHHHHHHHHHHHH
Q 024981 195 LCLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 195 Vaitd~g~eDk~~l~klve~i~ 216 (259)
++|-|.. .|-..+..+++...
T Consensus 169 vgiKdss-gd~~~~~~~~~~~~ 189 (301)
T 1xky_A 169 VAIKDAG-GDVLTMTEIIEKTA 189 (301)
T ss_dssp EEEEECS-SCHHHHHHHHHHSC
T ss_pred EEEEcCC-CCHHHHHHHHHhcC
Confidence 8887775 46666666665543
No 94
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=30.42 E-value=39 Score=25.01 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=27.9
Q ss_pred CccEEEEeCCCCc--hhhHHhHHHHhhhcCCCEEEeCCcchhhh
Q 024981 144 KAQLVVIAHDVDP--VELVVWLPALCRKMEIPYCIVKGKARLGV 185 (259)
Q Consensus 144 KAkLVVIA~DvdP--~elv~~LpaLC~~~~VPy~~v~sK~~LG~ 185 (259)
.+..+|+.-|++. .....++..+....++|++++.+|.+|-.
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 3556666666543 23334566667778999999999988753
No 95
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=30.33 E-value=1.1e+02 Score=26.83 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCccEEEEeCCCC----ch--hhHHhHHHHhh--hcCCCEEEeCCc
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVD----PV--ELVVWLPALCR--KMEIPYCIVKGK 180 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~Dvd----P~--elv~~LpaLC~--~~~VPy~~v~sK 180 (259)
+.+...+...++.+||+|.|+- |. .+..+...+.+ ..++|++.+.+.
T Consensus 30 ~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GN 84 (333)
T 1ii7_A 30 KNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGN 84 (333)
T ss_dssp HHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCT
T ss_pred HHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCc
Confidence 4555566677788999999973 21 12111111221 346887777654
No 96
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=30.19 E-value=47 Score=28.55 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=26.1
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
..+.++|+--|++..+-...+.....+.++|++++.+|.+|-
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred cCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 456666666666654444444555556677777777777654
No 97
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=30.12 E-value=1.5e+02 Score=21.23 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=32.2
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh---cCCCEEEeCCcchh
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK---MEIPYCIVKGKARL 183 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~---~~VPy~~v~sK~~L 183 (259)
......+....++.....+||+-.+....+-...+..+-+. .++|++++.+....
T Consensus 31 ~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 88 (140)
T 3n53_A 31 ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHK 88 (140)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC---
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCH
Confidence 34456777888888899999998776443333333333333 57999887665443
No 98
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.12 E-value=1.5e+02 Score=21.18 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=39.4
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHh---hhcCCCEEEeCCcchhhhh
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALC---RKMEIPYCIVKGKARLGVI 186 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC---~~~~VPy~~v~sK~~LG~a 186 (259)
......+....++.....+||+-.+....+-...+..+. ...++|++++.+...-...
T Consensus 35 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~ 95 (140)
T 3grc_A 35 MVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGEL 95 (140)
T ss_dssp EECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHH
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHH
Confidence 445567888889999999999987664433333344444 3468999988877655443
No 99
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=30.02 E-value=98 Score=23.95 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCccEEEEeCCCCc-------hhhHHhHHHHhhhcCCCEEEeC
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDP-------VELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP-------~elv~~LpaLC~~~~VPy~~v~ 178 (259)
..+++.++...+++|++..-..+ .++-..+..+|+++||+|+-+.
T Consensus 89 ~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 89 RQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 34455566555777766532222 2344567889999999998764
No 100
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=29.81 E-value=2.8e+02 Score=24.25 Aligned_cols=137 Identities=6% Similarity=0.107 Sum_probs=80.6
Q ss_pred Cccccccc--ccCChhhHHHHHHHhhcCC-------------cc-cHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchH
Q 024981 71 PPALNQFT--KTLDKNLASNLFKMLLKYR-------------PE-DRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLN 134 (259)
Q Consensus 71 pp~inqf~--~~ld~~~a~~l~kl~~kyr-------------PE-~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n 134 (259)
|+.+--|+ ..+|...-.++.+.+-.-- +- |..|+ .+++..+.+.++|+ -|.++-.|.+
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~gr-----vpviaGvg~~ 86 (297)
T 3flu_A 13 VALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEH-TAVIEAVVKHVAKR-----VPVIAGTGAN 86 (297)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTS-----SCEEEECCCS
T ss_pred EeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHH-HHHHHHHHHHhCCC-----CcEEEeCCCc
Confidence 55566665 3577776666666543211 11 33344 56666666655554 4555556655
Q ss_pred HHHHHHHh-------cCccEEEEeC---CCCchhhHHhHHHHhhhcCCCEEEeCC---------cchhhhhhcCCCeEEE
Q 024981 135 HVTYLIEQ-------NKAQLVVIAH---DVDPVELVVWLPALCRKMEIPYCIVKG---------KARLGVIVHKKTASVL 195 (259)
Q Consensus 135 ~Vtk~Iek-------kKAkLVVIA~---DvdP~elv~~LpaLC~~~~VPy~~v~s---------K~~LG~avGkk~~a~V 195 (259)
.+..+|+. |=-.++++.. -.++.+++.|+.++|+.-++|++++.- -+.+.++.. ...++
T Consensus 87 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~pniv 164 (297)
T 3flu_A 87 NTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAE--IPNIV 164 (297)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT--STTEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHc--CCCEE
Confidence 55555543 3333444443 245678999999999999999987632 223445542 23578
Q ss_pred EEeecCcccHHHHHHHHHHHH
Q 024981 196 CLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 196 aitd~g~eDk~~l~klve~i~ 216 (259)
+|-|.. .|-..+..+++...
T Consensus 165 giKdss-gd~~~~~~~~~~~~ 184 (297)
T 3flu_A 165 GVKEAS-GNIGSNIELINRAP 184 (297)
T ss_dssp EEEECS-CCHHHHHHHHHHSC
T ss_pred EEEeCC-CCHHHHHHHHHhcC
Confidence 888764 46666666665543
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=29.66 E-value=65 Score=24.54 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=25.8
Q ss_pred CccEEEEeCCCCchh-hHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDPVE-LVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP~e-lv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
.+.+|++.-|++..+ ...++..+. +.++|++++.+|.+|-
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLM-EMGANLLLALNKMDLA 121 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHH-HTTCCEEEEEECHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHH-hcCCCEEEEEEchHhc
Confidence 466777777775432 223344443 4689999999988874
No 102
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=29.51 E-value=3e+02 Score=24.43 Aligned_cols=140 Identities=10% Similarity=0.217 Sum_probs=83.2
Q ss_pred CCccccccc--ccCChhhHHHHHHHhhcCC-------------cc-cHHHHHHHHHHHHHHHHcCCCCCCCCCceEecch
Q 024981 70 VPPALNQFT--KTLDKNLASNLFKMLLKYR-------------PE-DRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGL 133 (259)
Q Consensus 70 vpp~inqf~--~~ld~~~a~~l~kl~~kyr-------------PE-~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~ 133 (259)
+|+.+--|+ ..+|...-.++.+.+-.-- +- |..|+ .+++..+.+.++|+ -|.++-.|.
T Consensus 28 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~v~~~~gr-----vpViaGvg~ 101 (314)
T 3qze_A 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEH-IQVIRRVVDQVKGR-----IPVIAGTGA 101 (314)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHH-HHHHHHHHHHHTTS-----SCEEEECCC
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCC-----CcEEEeCCC
Confidence 466666774 3577777666666542210 11 33344 56666666655554 455665666
Q ss_pred HHHHHHHHh-------cCccEEEEeC---CCCchhhHHhHHHHhhhcCCCEEEeCC---------cchhhhhhcCCCeEE
Q 024981 134 NHVTYLIEQ-------NKAQLVVIAH---DVDPVELVVWLPALCRKMEIPYCIVKG---------KARLGVIVHKKTASV 194 (259)
Q Consensus 134 n~Vtk~Iek-------kKAkLVVIA~---DvdP~elv~~LpaLC~~~~VPy~~v~s---------K~~LG~avGkk~~a~ 194 (259)
+.+..+|+. |=-.++++.. -.++.+++.|+.++|+.-++|++++.- -+.+.++.. ...+
T Consensus 102 ~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~pnI 179 (314)
T 3qze_A 102 NSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK--VPNI 179 (314)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT--STTE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc--CCCE
Confidence 556655543 3333444443 245678999999999999999987642 223445552 2357
Q ss_pred EEEeecCcccHHHHHHHHHHHHHh
Q 024981 195 LCLTTVKNEDKMEFSRILEAIKAN 218 (259)
Q Consensus 195 Vaitd~g~eDk~~l~klve~i~~n 218 (259)
++|-|.. .|-..+..+++....+
T Consensus 180 vgiKdss-gd~~~~~~~~~~~~~~ 202 (314)
T 3qze_A 180 IGIKEAT-GDLQRAKEVIERVGKD 202 (314)
T ss_dssp EEEEECS-CCHHHHHHHHHHSCTT
T ss_pred EEEEcCC-CCHHHHHHHHHHcCCC
Confidence 8888764 4666666666554433
No 103
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=29.04 E-value=70 Score=28.98 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=31.3
Q ss_pred hHHHHHHHHhcCccEEEEeCCCC-c----h-----hhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVD-P----V-----ELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvd-P----~-----elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
++.+...++..++.+||||.|+- . . .+..+|..|... +|++++.+.-+
T Consensus 32 l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~--~~v~~i~GNHD 89 (379)
T 3tho_B 32 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGNQD 89 (379)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--SCEEECCCTTS
T ss_pred HHHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--CCEEEEcCCCc
Confidence 45566667777889999999986 2 1 223444455433 89988776544
No 104
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.90 E-value=1.6e+02 Score=20.99 Aligned_cols=54 Identities=4% Similarity=-0.059 Sum_probs=35.1
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh-cCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK-MEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~-~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+....+-...+..+.+. .++|++++.+...
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 36 SAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSE 90 (137)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCC
T ss_pred EECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcC
Confidence 44556778888899999999998766543333334444433 3688877665543
No 105
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=28.78 E-value=65 Score=26.23 Aligned_cols=45 Identities=7% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
..+...++..++.+||++.|+...+.... + ...++|++.|.+.-+
T Consensus 42 ~~~l~~~~~~~~D~ii~~GDl~~~~~~~~---l-~~l~~~~~~V~GNhD 86 (190)
T 1s3l_A 42 RKAIEIFNDENVETVIHCGDFVSLFVIKE---F-ENLNANIIATYGNND 86 (190)
T ss_dssp HHHHHHHHHSCCSEEEECSCCCSTHHHHH---G-GGCSSEEEEECCTTC
T ss_pred HHHHHHHhhcCCCEEEECCCCCCHHHHHH---H-HhcCCCEEEEeCCCc
Confidence 34445555667889999999632233222 2 234678887776543
No 106
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.78 E-value=1.2e+02 Score=21.70 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=32.2
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhc-CCCEEEeCCcc
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKM-EIPYCIVKGKA 181 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~-~VPy~~v~sK~ 181 (259)
.....+....++.....+|| -.|.+-.++...+... . ++|++++.+..
T Consensus 48 ~~~~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~---~~~~~ii~ls~~~ 96 (137)
T 2pln_A 48 TESLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK---HSSIVVLVSSDNP 96 (137)
T ss_dssp ESCHHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHH---STTSEEEEEESSC
T ss_pred eCCHHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhc---CCCccEEEEeCCC
Confidence 34456777888888888988 6666665655555443 5 78888776544
No 107
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=28.56 E-value=90 Score=27.28 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCccEEEEeCC-CC----c-hh----hHHhHHHHhhhcCCCEEEeCCc
Q 024981 133 LNHVTYLIEQNKAQLVVIAHD-VD----P-VE----LVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~D-vd----P-~e----lv~~LpaLC~~~~VPy~~v~sK 180 (259)
++.+...++..++.+||+|.| +- | .+ +..+|..|... +|++.+.+.
T Consensus 50 l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i~GN 105 (336)
T 2q8u_A 50 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGN 105 (336)
T ss_dssp HHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH--SCEEECCC-
T ss_pred HHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc--CCEEEECCC
Confidence 355556666677889999999 42 2 11 23344444433 787777654
No 108
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=28.41 E-value=1.2e+02 Score=24.67 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=30.6
Q ss_pred hHHHHHHHHhc--CccEEEEeCCCCch---hhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 133 LNHVTYLIEQN--KAQLVVIAHDVDPV---ELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 133 ~n~Vtk~Iekk--KAkLVVIA~DvdP~---elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
+..++..+.+. ++.+||++.|.... +-...+..+.+..++|++.+.+.-+
T Consensus 28 l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD 82 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHD 82 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTS
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34455555543 57899999997421 1112344555667899888876644
No 109
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=28.20 E-value=1.8e+02 Score=27.22 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=62.7
Q ss_pred eEecchHHHHHHHHh----cCccEEEEeC---CCCch--hhHHhHHHHhhhcCCCEEEeCCcchhhhh-hcC-CCeEEEE
Q 024981 128 VVKYGLNHVTYLIEQ----NKAQLVVIAH---DVDPV--ELVVWLPALCRKMEIPYCIVKGKARLGVI-VHK-KTASVLC 196 (259)
Q Consensus 128 ~l~~G~n~Vtk~Iek----kKAkLVVIA~---DvdP~--elv~~LpaLC~~~~VPy~~v~sK~~LG~a-vGk-k~~a~Va 196 (259)
.+.+|++.|..++.= ..+.|||..+ |.... ....-+-.+|++ +||++.+-+....+.- +.. -..++..
T Consensus 258 ~l~~G~~~v~~~~~l~~~l~~ADLVITGEG~~D~QT~~GK~p~gVa~~A~~-~~PviaiaG~~~~~~~~~~~~Gi~a~f~ 336 (371)
T 1to6_A 258 SIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPV-GVPVVAICGSLVEDLPSLPFENIQAAFS 336 (371)
T ss_dssp EEEEHHHHHHHHTTHHHHTTTCSEEEECCSEECSTTTTTCHHHHHHTTSCT-TCCEEEEESEECTTCCCSSBTTEEEEEE
T ss_pred EeccHHHHHHHhhCHHHHhcCCCEEEECCCCCCCCCCCCcHHHHHHHHHhc-CCCEEEEeCCCCCChHHHHhcCCcEEEE
Confidence 489999999987632 4699999988 65432 222335678888 9999977766554421 111 1235555
Q ss_pred EeecCcccHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 024981 197 LTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKW 230 (259)
Q Consensus 197 itd~g~eDk~~l~klve~i~~nynd~y~e~~~~w 230 (259)
+++... .|++.++.-..|..+.-+.+.|.|
T Consensus 337 i~~~~~----~l~~a~~~a~~~L~~~a~~i~r~~ 366 (371)
T 1to6_A 337 ILEKSE----PLEDSLKNASLYLEHTASNIGHLL 366 (371)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC----CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554432 255555556667777777788877
No 110
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=28.16 E-value=53 Score=28.08 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=24.0
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
..+.+||+--|++..+-...+.....++++|++++.+|.++-
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 445566666666554444444455555667777666666553
No 111
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=28.15 E-value=3e+02 Score=23.97 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHh-------cCccEEEEeC---CCCchhhHHhHHHHhhhc
Q 024981 101 RAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQ-------NKAQLVVIAH---DVDPVELVVWLPALCRKM 170 (259)
Q Consensus 101 k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~Iek-------kKAkLVVIA~---DvdP~elv~~LpaLC~~~ 170 (259)
..|+ .+++..+.+.++|+ -|.++-.|.+.+..+|+. |=-.++++.. -.++.+++.|+.++|+.-
T Consensus 53 ~~Er-~~v~~~~~~~~~gr-----~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 53 MEEH-TQVIKEIIRVANKR-----IPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp HHHH-HHHHHHHHHHHTTS-----SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHhCCC-----CeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 3344 56666666655554 455555565555555543 3333444442 346678999999999999
Q ss_pred CCCEEEeCC---------cchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 171 EIPYCIVKG---------KARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 171 ~VPy~~v~s---------K~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
++|+++..- -+.+.++.. ...+++|-|.. .|-..+..+++....+|
T Consensus 127 ~lPiilYn~P~~tg~~l~~~~~~~La~--~pnivgiK~ss-gd~~~~~~~~~~~~~~f 181 (291)
T 3tak_A 127 ELPLILYNVPGRTGVDLSNDTAVRLAE--IPNIVGIKDAT-GDVPRGKALIDALNGKM 181 (291)
T ss_dssp CSCEEEEECHHHHSCCCCHHHHHHHTT--STTEEEEEECS-CCHHHHHHHHHHHTTSS
T ss_pred CCCEEEEecccccCCCCCHHHHHHHHc--CCCEEEEEeCC-CCHHHHHHHHHHcCCCe
Confidence 999987532 233445552 23578888764 46666777776654433
No 112
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=27.53 E-value=89 Score=30.15 Aligned_cols=22 Identities=9% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCccEEEEeCCCC
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~Dvd 155 (259)
..++..+...++.+|||+.|+-
T Consensus 105 ~~lv~~~~~~~~D~VliaGDLf 126 (472)
T 4fbk_A 105 NEILEIARERDVDMILLGGDIF 126 (472)
T ss_dssp HHHHHHHHHTTCSEEEECSCSB
T ss_pred HHHHHHHHhcCCCEEEEcCccc
Confidence 5677777888999999999983
No 113
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=27.14 E-value=79 Score=26.71 Aligned_cols=19 Identities=11% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHhhhcCCCEEEeCCcc
Q 024981 163 LPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 163 LpaLC~~~~VPy~~v~sK~ 181 (259)
...+++..|+|++.+..+.
T Consensus 131 ~~~l~~~lg~~~~~~Sa~~ 149 (271)
T 3k53_A 131 IKKMRKELGVPVIPTNAKK 149 (271)
T ss_dssp HHHHHHHHSSCEEECBGGG
T ss_pred HHHHHHHcCCcEEEEEeCC
Confidence 4456666666666554443
No 114
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=27.07 E-value=70 Score=27.85 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCc--hhhHHhHHHHhhhcCCCEEE
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDP--VELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP--~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+..+|...+.++|++.+-..| .++ ..|.++|+++|++++.
T Consensus 161 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~i~~l~~~~~~~li~ 205 (425)
T 3ecd_A 161 YDQVEALAQQHKPSLIIAGFSAYPRKLDF-ARFRAIADSVGAKLMV 205 (425)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCCCSCCCH-HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhcCCcEEEEccccCCCcCCH-HHHHHHHHHcCCEEEE
Confidence 467777887667889988742222 344 4588999999997754
No 115
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=26.97 E-value=88 Score=29.14 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=52.6
Q ss_pred CCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHH-hhhhhhhhhhhccC
Q 024981 153 DVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKA-NFNDKYDEHRKKWG 231 (259)
Q Consensus 153 DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~-nynd~y~e~~~~wg 231 (259)
+++..+++.||.-+|+-.|+-.+-++|--. |.. .-.+-+|-..+..|++.+.. .|.+ ++|.+-||
T Consensus 279 ~~tl~~~~~Hi~hi~~l~G~dhVgiGsDfd-----G~~-------~p~gl~d~s~~p~L~~~L~~rG~se--~~i~ki~g 344 (364)
T 3ly0_A 279 EMGWEPVLRHLDHLIDRLGEDHVGMGSDFD-----GAT-------IPQGIADVTGLPALQAAMRAHGYDE--PLMRKLCH 344 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHCTTSEEECCCBT-----TSC-------CCTTTCSGGGHHHHHHHHHHHTCCH--HHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEECCCCC-----CCC-------CCCCCCCHHHHHHHHHHHHHCCCCH--HHHHHHHh
Confidence 567788999999999999999887776543 211 22445777888899877765 4987 68999999
Q ss_pred CCCC
Q 024981 232 GGIM 235 (259)
Q Consensus 232 g~~l 235 (259)
||.|
T Consensus 345 ~N~l 348 (364)
T 3ly0_A 345 ENWY 348 (364)
T ss_dssp HHHH
T ss_pred HhHH
Confidence 9976
No 116
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.91 E-value=1.7e+02 Score=20.59 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=33.2
Q ss_pred EecchHHHHHHHHh-------cCccEEEEeCCCCchhhHHhHHHHhhh---cCCCEEEeCCcc
Q 024981 129 VKYGLNHVTYLIEQ-------NKAQLVVIAHDVDPVELVVWLPALCRK---MEIPYCIVKGKA 181 (259)
Q Consensus 129 l~~G~n~Vtk~Iek-------kKAkLVVIA~DvdP~elv~~LpaLC~~---~~VPy~~v~sK~ 181 (259)
......+....++. ....+||+-.+....+-...+..+.+. .++|++++.+..
T Consensus 33 ~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 33 TVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp EECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred EECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 34445677777777 678999998776443333333444433 579998776544
No 117
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=26.73 E-value=3.4e+02 Score=24.07 Aligned_cols=137 Identities=14% Similarity=0.223 Sum_probs=79.8
Q ss_pred CCccccccc--ccCChhhHHHHHHHhhcCC-------------cc-cHHHHHHHHHHHHHHHHcCCCCCCCCCceEecch
Q 024981 70 VPPALNQFT--KTLDKNLASNLFKMLLKYR-------------PE-DRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGL 133 (259)
Q Consensus 70 vpp~inqf~--~~ld~~~a~~l~kl~~kyr-------------PE-~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~ 133 (259)
+|+.+--|+ ..+|...-.++.+.+-.-- +- |..| +.+++..+.+.++|+ -|.++-.|.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~gr-----vpViaGvg~ 85 (311)
T 3h5d_A 12 ITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDE-ELELFAAVQKVVNGR-----VPLIAGVGT 85 (311)
T ss_dssp EEECCCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHH-HHHHHHHHHHHSCSS-----SCEEEECCC
T ss_pred EEeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhCCC-----CcEEEeCCC
Confidence 355666664 3577666666665543211 11 2333 355666666644443 455555565
Q ss_pred HHHHHHHHh-------cC-ccEEEEeC---CCCchhhHHhHHHHhhhcCCCEEEeCC---------cchhhhhhcCCCeE
Q 024981 134 NHVTYLIEQ-------NK-AQLVVIAH---DVDPVELVVWLPALCRKMEIPYCIVKG---------KARLGVIVHKKTAS 193 (259)
Q Consensus 134 n~Vtk~Iek-------kK-AkLVVIA~---DvdP~elv~~LpaLC~~~~VPy~~v~s---------K~~LG~avGkk~~a 193 (259)
+.+..+|+. |- -.++++.. -.++.+++.|+.++|+.-++|+++..- -+.+.++... ..
T Consensus 86 ~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~--pn 163 (311)
T 3h5d_A 86 NDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADH--PN 163 (311)
T ss_dssp SSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTS--TT
T ss_pred cCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcC--CC
Confidence 555555542 33 23344442 235678999999999999999987642 2344555543 35
Q ss_pred EEEEeecCcccHHHHHHHHHHHH
Q 024981 194 VLCLTTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 194 ~Vaitd~g~eDk~~l~klve~i~ 216 (259)
+++|-|.. |-..+..+++...
T Consensus 164 IvgiKdss--d~~~~~~~~~~~~ 184 (311)
T 3h5d_A 164 IIGVKECT--SLANMAYLIEHKP 184 (311)
T ss_dssp EEEEEECS--CHHHHHHHHHHCC
T ss_pred EEEEEeCC--CHHHHHHHHHHcC
Confidence 78888865 7766666665543
No 118
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=25.81 E-value=1.2e+02 Score=24.91 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCceEecchHHH-HHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe
Q 024981 125 KPIVVKYGLNHV-TYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 125 ~p~~l~~G~n~V-tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v 177 (259)
+-..+++ +..+ ..+|.+-+-=++++.+ +.-.+-...|..++++ +||++..
T Consensus 17 ~~a~~~~-i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 17 KMATLLE-KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp CCCEECC-CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred ccceecc-HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 3444556 7887 9999998888888888 8644445568899999 9999966
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=25.14 E-value=82 Score=26.81 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=22.3
Q ss_pred cCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 143 NKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
..+.+||+--|++..+-...+.....++++|++++.+|.+|-
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 445566666666543322223333344577777777766653
No 120
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=25.01 E-value=3.4e+02 Score=23.59 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHh-------cCccEEEEeCC---CCchhhHHhHHHHhhhcCCCEE
Q 024981 106 ERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQ-------NKAQLVVIAHD---VDPVELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 106 ~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~Iek-------kKAkLVVIA~D---vdP~elv~~LpaLC~~~~VPy~ 175 (259)
.+++..+.+.++|+ -|.+.-.|.+.+..+|+. |=-.++++..- .++.++..|+.++|+.-++|++
T Consensus 57 ~~v~~~~~~~~~gr-----~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPii 131 (291)
T 3a5f_A 57 KETIKFVIDKVNKR-----IPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPII 131 (291)
T ss_dssp HHHHHHHHHHHTTS-----SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEE
T ss_pred HHHHHHHHHHhCCC-----CcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 45566666555554 455555565555555532 32334444432 3667899999999999999998
Q ss_pred EeC---------CcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 176 IVK---------GKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 176 ~v~---------sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
++. +-+.+.++.. ...+++|-|.. .|-..+..+++....+|
T Consensus 132 lYn~P~~tg~~l~~~~~~~La~--~pnivgiK~s~-gd~~~~~~~~~~~~~~f 181 (291)
T 3a5f_A 132 IYNVPGRTGLNITPGTLKELCE--DKNIVAVXEAS-GNISQIAQIKALCGDKL 181 (291)
T ss_dssp EEECHHHHSCCCCHHHHHHHTT--STTEEEEEECS-CCHHHHHHHHHHHGGGS
T ss_pred EEeCccccCCCCCHHHHHHHHc--CCCEEEEeCCC-CCHHHHHHHHHhcCCCe
Confidence 754 2233445542 23578887764 46666777776655444
No 121
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=24.82 E-value=92 Score=25.82 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=22.3
Q ss_pred EEEeCCCCchhhHHhHHHHhhhcCCCEE-EeCCcchhhhhhcCC
Q 024981 148 VVIAHDVDPVELVVWLPALCRKMEIPYC-IVKGKARLGVIVHKK 190 (259)
Q Consensus 148 VVIA~DvdP~elv~~LpaLC~~~~VPy~-~v~sK~~LG~avGkk 190 (259)
.||.+.+++..-...+..+++.+|+|+. .+.....+..+....
T Consensus 178 gvv~N~~~~~~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g 221 (269)
T 1cp2_A 178 GIICNSRKVANEYELLDAFAKELGSQLIHFVPRSPMVTKAEINK 221 (269)
T ss_dssp EEEEECCSSSCCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTT
T ss_pred EEEeecCCcchhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcC
Confidence 3444555432222335566667777764 355556666655443
No 122
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=24.72 E-value=1.2e+02 Score=24.98 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=28.6
Q ss_pred EecchHHHHHHHHhcC----cc--EEEEeCCC--CchhhHHhHHHHhhhcCCCEEE
Q 024981 129 VKYGLNHVTYLIEQNK----AQ--LVVIAHDV--DPVELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 129 l~~G~n~Vtk~IekkK----Ak--LVVIA~Dv--dP~elv~~LpaLC~~~~VPy~~ 176 (259)
+-.|+......++... .+ +|++..|. ++.++.. +-..+++.||.+.+
T Consensus 86 l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~-~a~~lk~~gi~v~~ 140 (192)
T 2x5n_A 86 FGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIR-LAKRMKKNNVAIDI 140 (192)
T ss_dssp HHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHH-HHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHH-HHHHHHHCCCEEEE
Confidence 4456777777776632 33 56666665 3555433 55667888887744
No 123
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=24.62 E-value=59 Score=24.84 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=25.2
Q ss_pred CccEEEEeCCCC------chhhHHhHHHHhhh-----cCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVD------PVELVVWLPALCRK-----MEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~Dvd------P~elv~~LpaLC~~-----~~VPy~~v~sK~~LG 184 (259)
.+..+|+.-|++ ..+....+..+..+ .++|++++.+|.+|-
T Consensus 97 ~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 97 GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 466777777886 22222223333222 589999999998874
No 124
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=24.54 E-value=81 Score=27.39 Aligned_cols=43 Identities=7% Similarity=0.197 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCc--hhhHHhHHHHhhhcCCCEEE
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDP--VELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP--~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.++|...+.++|++.+-..| .++ ..|.++|+++|++++.
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVVDW-AKMREIADSIGAYLFV 202 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCCCH-HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCccCH-HHHHHHHHHcCCEEEE
Confidence 467788888777889988542222 233 4588999999997764
No 125
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=24.50 E-value=1e+02 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=29.4
Q ss_pred ceEecc----hHHHHHHHHhcC--ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeC
Q 024981 127 IVVKYG----LNHVTYLIEQNK--AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 127 ~~l~~G----~n~Vtk~IekkK--AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.++.+| ...+..+++++. +.++.+-.|-+.. .....|+++|||++.+.
T Consensus 4 ~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~~~----~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 4 VVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADA----FGLERARQAGIATHTLI 57 (212)
T ss_dssp EEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTC----HHHHHHHHTTCEEEECC
T ss_pred EEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCCch----HHHHHHHHcCCcEEEeC
Confidence 356677 445556666674 4555555443221 13578999999998754
No 126
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=24.21 E-value=1.2e+02 Score=23.08 Aligned_cols=43 Identities=5% Similarity=-0.009 Sum_probs=28.6
Q ss_pred HHHHHHhcCccEEEEeCCCCc-------hhhHHhHHHHhhhcCCCEEEeC
Q 024981 136 VTYLIEQNKAQLVVIAHDVDP-------VELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP-------~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.++.++...+++|++..-..| .++-..+..+|++++++|+-..
T Consensus 95 ~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~ 144 (185)
T 3hp4_A 95 LVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFF 144 (185)
T ss_dssp HHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCT
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcch
Confidence 345556666778777632222 2445668899999999998654
No 127
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=24.13 E-value=3.7e+02 Score=23.70 Aligned_cols=142 Identities=10% Similarity=0.162 Sum_probs=81.6
Q ss_pred CCccccccc--ccCChhhHHHHHHHhhcCC-------------cc-cHHHHHHHHHHHHHHHHcCCCCCCCCCceEecch
Q 024981 70 VPPALNQFT--KTLDKNLASNLFKMLLKYR-------------PE-DRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGL 133 (259)
Q Consensus 70 vpp~inqf~--~~ld~~~a~~l~kl~~kyr-------------PE-~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~ 133 (259)
+|+.+--|+ ..+|...-.++.+.+-.-- +- |..|+ .+++..+.+.++|+ -|.++-.|.
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~gr-----vpviaGvg~ 86 (309)
T 3fkr_A 13 FPVVPTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDER-DVLTRTILEHVAGR-----VPVIVTTSH 86 (309)
T ss_dssp CCBCCCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHH-HHHHHHHHHHHTTS-----SCEEEECCC
T ss_pred EEeeeCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHH-HHHHHHHHHHhCCC-----CcEEEecCC
Confidence 466666664 3577776666666543211 11 33343 56666666655554 455555566
Q ss_pred HHHHHHHHh-------cCccEEEEeC------CCCchhhHHhHHHHhhhcCCCEEEeCC--------cchhhhhhc-CCC
Q 024981 134 NHVTYLIEQ-------NKAQLVVIAH------DVDPVELVVWLPALCRKMEIPYCIVKG--------KARLGVIVH-KKT 191 (259)
Q Consensus 134 n~Vtk~Iek-------kKAkLVVIA~------DvdP~elv~~LpaLC~~~~VPy~~v~s--------K~~LG~avG-kk~ 191 (259)
+.+..+|+. |=-.++++.. -.++.+++.|+.++|+.-++|++++.- -+.+.++.. ..
T Consensus 87 ~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~~~p- 165 (309)
T 3fkr_A 87 YSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAREIE- 165 (309)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHST-
T ss_pred chHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHhhCC-
Confidence 656555543 3233344443 346789999999999999999986532 123334442 23
Q ss_pred eEEEEEeecCcccHHHHHHHHHHHHHhh
Q 024981 192 ASVLCLTTVKNEDKMEFSRILEAIKANF 219 (259)
Q Consensus 192 ~a~Vaitd~g~eDk~~l~klve~i~~ny 219 (259)
.+++|-+..+.|-..+..+++.....|
T Consensus 166 -nIvgiK~~~~~~~~~~~~~~~~~~~~~ 192 (309)
T 3fkr_A 166 -QVAYFXIETPGAANKLRELIRLGGDAI 192 (309)
T ss_dssp -TEEEEEECSSSHHHHHHHHHHHHGGGC
T ss_pred -CEEEEECCCcchHHHHHHHHHhcCCce
Confidence 467887433345556667766655443
No 128
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.10 E-value=1.7e+02 Score=20.91 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=33.5
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh-cCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK-MEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~-~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-. ....+-...+..+.+. .++|++++.+...
T Consensus 33 ~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (142)
T 2qxy_A 33 WAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVD 86 (142)
T ss_dssp EESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCC
T ss_pred EECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCC
Confidence 344557778888888899999987 5443333334444433 3689887765443
No 129
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=24.09 E-value=1e+02 Score=22.80 Aligned_cols=54 Identities=4% Similarity=-0.070 Sum_probs=31.2
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC----cchhhhhhcCCCeEEEEEee
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG----KARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s----K~~LG~avGkk~~a~Vaitd 199 (259)
.+.+|.|..|.+. -...+..+++++++++-.+.+ ..+|....|....-++.++|
T Consensus 60 ~v~~v~v~~d~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid 117 (154)
T 3ia1_A 60 GVPFYVISREPRD--TREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVD 117 (154)
T ss_dssp CCCEEEEECCTTC--CHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEEC
T ss_pred CCeEEEEeCCCcc--cHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEEC
Confidence 5666666664221 223356778888888876654 44566666665433333444
No 130
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=24.00 E-value=93 Score=27.39 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCch------hhHHhHHHHhhhcCCCEEE
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPV------ELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~------elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.++|++.+.++|+|.+=-+|. +-...|-++|+++|+.++.
T Consensus 171 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 171 REKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 3556667756778899885433332 2245578999999997764
No 131
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=23.61 E-value=2.7e+02 Score=21.92 Aligned_cols=93 Identities=17% Similarity=0.065 Sum_probs=52.8
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHH
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKME 207 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~ 207 (259)
+......+...++.+|++..++.-..+ +..+.+.++-.+.++.. ........++++... +...
T Consensus 129 ~~~~~~~~~~~~L~~GrvDa~i~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~k~---~~~l 191 (232)
T 3i6v_A 129 VEFATPEETIAAVRNGEADAVFADRDY--------LVPIVAESGGELMFVGD------DVPLGGGVGMGLRES---DGEL 191 (232)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHH--------HHHHHHHTTTSSEEEEE------EEECSSCEEEEECTT---CHHH
T ss_pred EEeCCHHHHHHHHHcCCcCEEEEChHH--------HHHHHHhCCCCeEEecC------CCCCCCcEEEEEeCC---CHHH
Confidence 345677888999999999988764421 12233444333333321 111122345666432 3444
Q ss_pred HHHHHHHHHHhhhh-hhhhhhhccCCCCCCc
Q 024981 208 FSRILEAIKANFND-KYDEHRKKWGGGIMGS 237 (259)
Q Consensus 208 l~klve~i~~nynd-~y~e~~~~wgg~~lg~ 237 (259)
++.+-.++.....| .|++|..+|-|.-..+
T Consensus 192 ~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~ 222 (232)
T 3i6v_A 192 RGKFDAAITSMKEDGTLNTMIKKWFGEDAAV 222 (232)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHCChHHHHHHHHcCCCCCc
Confidence 45555555555555 7899999997765443
No 132
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=23.54 E-value=94 Score=25.54 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=28.6
Q ss_pred HHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcch
Q 024981 137 TYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKAR 182 (259)
Q Consensus 137 tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~ 182 (259)
...++..++.+||++.|+.+.+....|. ..++|++.|.+.-+
T Consensus 48 ~~~~~~~~~D~vi~~GDl~~~~~l~~l~----~~~~~v~~V~GNHD 89 (215)
T 2a22_A 48 RELLATDKINYVLCTGNVCSQEYVEMLK----NITKNVYIVSGDLD 89 (215)
T ss_dssp HHHHHCTTCCEEEECSCCCCHHHHHHHH----HHCSCEEECCCTTC
T ss_pred HHHHhcCCCCEEEECCCCCCHHHHHHHH----HcCCCEEEecCCCc
Confidence 3344567799999999997655544443 34578888876654
No 133
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=23.52 E-value=2.3e+02 Score=20.97 Aligned_cols=46 Identities=7% Similarity=0.020 Sum_probs=24.6
Q ss_pred CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc-c---hhhhhhcCC
Q 024981 144 KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK-A---RLGVIVHKK 190 (259)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK-~---~LG~avGkk 190 (259)
.+.+|.|+.|-+..+ ...+...++++++++..+.+. + ++.+..|..
T Consensus 61 ~~~vv~vs~d~~~d~-~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 61 DLTPLFISIDPERDT-KEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp CEEEEEEESCTTTCC-HHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred cEEEEEEEeCCCCCC-HHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 455666666542211 233566777888887765322 2 355555543
No 134
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=23.33 E-value=3.1e+02 Score=24.24 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=67.3
Q ss_pred HHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCE-EEeCCcchhhhhhcCCCeEEEEEeecCc----ccHHHHH
Q 024981 135 HVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPY-CIVKGKARLGVIVHKKTASVLCLTTVKN----EDKMEFS 209 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy-~~v~sK~~LG~avGkk~~a~Vaitd~g~----eDk~~l~ 209 (259)
++..+..-|--.+++++.+.++.++ ..|-..|+..|.-. +.+.+.++|-++.-.. +..|+++..+- -|-....
T Consensus 134 qi~ea~~~GAD~VlLi~a~L~~~~l-~~l~~~a~~lGl~~lvevh~~eEl~~A~~~g-a~iIGinnr~l~t~~~dl~~~~ 211 (272)
T 3tsm_A 134 QVYEARSWGADCILIIMASVDDDLA-KELEDTAFALGMDALIEVHDEAEMERALKLS-SRLLGVNNRNLRSFEVNLAVSE 211 (272)
T ss_dssp HHHHHHHTTCSEEEEETTTSCHHHH-HHHHHHHHHTTCEEEEEECSHHHHHHHTTSC-CSEEEEECBCTTTCCBCTHHHH
T ss_pred HHHHHHHcCCCEEEEcccccCHHHH-HHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CCEEEECCCCCccCCCChHHHH
Confidence 6777778887778889999987665 44788899999754 5689999998877544 46788886552 2333444
Q ss_pred HHHHHHHHhhhhhhhhhhhccCCCCCCchhHHHH
Q 024981 210 RILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKT 243 (259)
Q Consensus 210 klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~~ 243 (259)
+|++.+.. .+.-=-+|||-++..+..+
T Consensus 212 ~L~~~ip~-------~~~vIaesGI~t~edv~~l 238 (272)
T 3tsm_A 212 RLAKMAPS-------DRLLVGESGIFTHEDCLRL 238 (272)
T ss_dssp HHHHHSCT-------TSEEEEESSCCSHHHHHHH
T ss_pred HHHHhCCC-------CCcEEEECCCCCHHHHHHH
Confidence 55544421 1233447788777665554
No 135
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=22.98 E-value=2e+02 Score=20.14 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=34.8
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.....+....++.....+||+-.+....+-...+..+-+..++|++++.+..
T Consensus 32 ~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 32 AHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp ESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 3445677788889999999998776544444444555555688988765433
No 136
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=22.83 E-value=2.7e+02 Score=21.64 Aligned_cols=94 Identities=10% Similarity=0.057 Sum_probs=51.8
Q ss_pred eEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCC---eEEEEEeecCccc
Q 024981 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKT---ASVLCLTTVKNED 204 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~---~a~Vaitd~g~eD 204 (259)
+......+...++.+|++..++....+ . ..+.++.+- +.++.. ...... ..++++... +
T Consensus 142 ~~~~~~~~~~~~L~~g~vDa~~~~~~~----~----~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~k~---~ 203 (242)
T 3del_B 142 RSFDSTLEVLMEVMHGKSPVAVLEPSI----A----QVVLKDFPA-LSTATI------DLPEDQWVLGYGIGVASD---R 203 (242)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEECHHH----H----HHHGGGCTT-EEEEEE------ECCGGGCEEEEEEEEETT---C
T ss_pred EEECCHHHHHHHHHcCCCCEEEecHHH----H----HHHHHhCCC-eEEecC------ccCcccccceEEEEEeCC---C
Confidence 345678889999999999987654321 1 222233332 333221 111111 144555443 3
Q ss_pred HHHHHHHHHHHHHhh-hhhhhhhhhccCCCCCCchh
Q 024981 205 KMEFSRILEAIKANF-NDKYDEHRKKWGGGIMGSKS 239 (259)
Q Consensus 205 k~~l~klve~i~~ny-nd~y~e~~~~wgg~~lg~ks 239 (259)
...++.|-+++.... +..|++|..+|+|..--+.+
T Consensus 204 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~~ 239 (242)
T 3del_B 204 PALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHHH 239 (242)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSSTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCcccc
Confidence 434455555555544 36899999999997665544
No 137
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=22.78 E-value=2.3e+02 Score=20.82 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=33.0
Q ss_pred ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc----chhhhhhcCCCeEEEEEeecC
Q 024981 145 AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK----ARLGVIVHKKTASVLCLTTVK 201 (259)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK----~~LG~avGkk~~a~Vaitd~g 201 (259)
+.+|.|..|-++.+ +....+++++++..+.+. .++....|....-.+.|+|.+
T Consensus 70 ~~~v~v~~d~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~ 126 (150)
T 3fw2_A 70 IGMLGISLDVDKQQ----WKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSD 126 (150)
T ss_dssp EEEEEEECCSCHHH----HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTT
T ss_pred eEEEEEEcCCCHHH----HHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCC
Confidence 55666666654433 456678889998877663 477777776653334455543
No 138
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.32 E-value=1e+02 Score=27.00 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=14.8
Q ss_pred CchhhHHhHHHHhhhcCCCEEEeC
Q 024981 155 DPVELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 155 dP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
||.++ ..|..++++.+|+++|+.
T Consensus 197 s~~~l-~~l~~~ik~~~v~~if~e 219 (282)
T 3mfq_A 197 ANSDM-IETVNLIIDHNIKAIFTE 219 (282)
T ss_dssp CHHHH-HHHHHHHHHHTCCEEECB
T ss_pred CHHHH-HHHHHHHHHcCCCEEEEe
Confidence 44444 336777777788877765
No 139
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=22.21 E-value=2.4e+02 Score=21.00 Aligned_cols=37 Identities=5% Similarity=0.091 Sum_probs=23.7
Q ss_pred HHHHhhhcCC-CEEEeCCcchhhhhhcCCCeEEEEEee
Q 024981 163 LPALCRKMEI-PYCIVKGKARLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 163 LpaLC~~~~V-Py~~v~sK~~LG~avGkk~~a~Vaitd 199 (259)
+....+++++ ++-++.+..+|....|....-++.|+|
T Consensus 101 ~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid 138 (165)
T 3ha9_A 101 FRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMD 138 (165)
T ss_dssp HHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEc
Confidence 4566778888 776555577888888876533334444
No 140
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.13 E-value=2.2e+02 Score=20.80 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=33.7
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh-cCCCEEEeCCcch
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK-MEIPYCIVKGKAR 182 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~-~~VPy~~v~sK~~ 182 (259)
.....+....++.....+||+-.+....+-...+..+.+. .++|++++.+...
T Consensus 33 ~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 33 FASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp ESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 3445666677777889999998776543333334444443 4799988765543
No 141
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=21.88 E-value=1.9e+02 Score=19.41 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=34.7
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh---cCCCEEEeCCcc
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK---MEIPYCIVKGKA 181 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~---~~VPy~~v~sK~ 181 (259)
......+....+......+||+-.+....+-...+..+.+. .++|++.+.+..
T Consensus 30 ~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 30 WLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp EESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred EecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCC
Confidence 34455777788888889999998776544433445555544 578887765443
No 142
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=21.86 E-value=1.2e+02 Score=25.36 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=30.6
Q ss_pred hHHHHHHHHhc------CccEEEEeCCCCc------hhhHHhHHHHhhhcCCCEEE
Q 024981 133 LNHVTYLIEQN------KAQLVVIAHDVDP------VELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~Iekk------KAkLVVIA~DvdP------~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+..+|+.. +.++|++.+- +| .+-...|-++|+++|+.++.
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFL 182 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEE
Confidence 56778888776 4788888753 43 23345688999999997654
No 143
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=21.83 E-value=82 Score=27.61 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=36.7
Q ss_pred HHHHHHHhcCccEEEEeCCCC--chh---hHHhHHHHhhhcCCCEEEeCCcchhh--hhhcCCCeEEEEEeecCcccHHH
Q 024981 135 HVTYLIEQNKAQLVVIAHDVD--PVE---LVVWLPALCRKMEIPYCIVKGKARLG--VIVHKKTASVLCLTTVKNEDKME 207 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~Dvd--P~e---lv~~LpaLC~~~~VPy~~v~sK~~LG--~avGkk~~a~Vaitd~g~eDk~~ 207 (259)
..+..++......||+.+=+| +.+ ....+...++..|+|++.+..+...| .+...-.-.+++|+-.+..-|..
T Consensus 101 ~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKST 180 (302)
T 2yv5_A 101 NMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSS 180 (302)
T ss_dssp HHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHH
T ss_pred HHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHH
Confidence 334445556666777776444 221 12334556667788887766544322 22211111234555555444544
Q ss_pred HHH
Q 024981 208 FSR 210 (259)
Q Consensus 208 l~k 210 (259)
|-+
T Consensus 181 Lln 183 (302)
T 2yv5_A 181 ILS 183 (302)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 144
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=21.76 E-value=90 Score=25.63 Aligned_cols=19 Identities=47% Similarity=0.457 Sum_probs=11.5
Q ss_pred HHHHHHhcCccEEEEeCCC
Q 024981 136 VTYLIEQNKAQLVVIAHDV 154 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~Dv 154 (259)
+...++..++.+||++.|+
T Consensus 44 ~l~~~~~~~~d~vi~~GDl 62 (208)
T 1su1_A 44 VLELFAQSGAQWLVILGDV 62 (208)
T ss_dssp HHHHHHHHTCSEEEECSCC
T ss_pred HHHHHHhcCCCEEEECCCc
Confidence 3334444556777777776
No 145
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=21.70 E-value=3.2e+02 Score=25.07 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=62.9
Q ss_pred ccccCChhhHHHHHHHhhcCCcccHHH------HHHHHHHHHHHHHcCCCCCCCCCceE---ecchHHHHHHHHhcCccE
Q 024981 77 FTKTLDKNLASNLFKMLLKYRPEDRAA------KKERLLKKAQAEAEGKTVESKKPIVV---KYGLNHVTYLIEQNKAQL 147 (259)
Q Consensus 77 f~~~ld~~~a~~l~kl~~kyrPE~k~e------K~~rLl~~A~k~aaGk~~~~~~p~~l---~~G~n~Vtk~IekkKAkL 147 (259)
.++..+-++|.++.+.+..|.++--.| -...+..+.+. .+- |... ..+......+|+.+.+.+
T Consensus 220 aN~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~~l~~~--~~i------PIa~dE~~~~~~~~~~~l~~~~~d~ 291 (410)
T 3dip_A 220 LHSLWGTHAAARICNALADYGVLWVEDPIAKMDNIPAVADLRRQ--TRA------PICGGENLAGTRRFHEMLCADAIDF 291 (410)
T ss_dssp CTTCBCHHHHHHHHHHGGGGTCSEEECCBSCTTCHHHHHHHHHH--HCC------CEEECTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEECCCCCcccHHHHHHHHhh--CCC------CEEecCCcCCHHHHHHHHHcCCCCe
Confidence 567788899999999999885431111 12223223322 221 2111 234567888999999998
Q ss_pred EEEeCC-CCchhhHHhHHHHhhhcCCCEEEeCCcchhhhh
Q 024981 148 VVIAHD-VDPVELVVWLPALCRKMEIPYCIVKGKARLGVI 186 (259)
Q Consensus 148 VVIA~D-vdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~a 186 (259)
|.+=-. +.-++-...+-++|+.+|||++.-.. ..+|.+
T Consensus 292 v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~-s~i~~a 330 (410)
T 3dip_A 292 VMLDLTWCGGLSEGRKIAALAETHARPLAPHXT-GPVALM 330 (410)
T ss_dssp EEECTTTSSCHHHHHHHHHHHHHTTCCEEECSS-CHHHHH
T ss_pred EeecccccCCHHHHHHHHHHHHHcCCEEeeeCc-cHHHHH
Confidence 877332 22234445689999999999987555 556543
No 146
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=21.67 E-value=98 Score=26.80 Aligned_cols=44 Identities=7% Similarity=0.335 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCc------hhhHHhHHHHhhhcCCCEEE
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDP------VELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP------~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.++|+..+.++|+|.+=-+| .+-...|-++|+++|+.++.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 466777776557888888642223 22345588999999998764
No 147
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=21.60 E-value=1.8e+02 Score=23.25 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=32.9
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEe
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v 177 (259)
+..+...|.+-+-=++++..-+.-......+..+++..|+|++..
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEEC
Confidence 677888887776555555555654455566889999999999864
No 148
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=21.48 E-value=4.2e+02 Score=23.34 Aligned_cols=35 Identities=6% Similarity=0.094 Sum_probs=22.1
Q ss_pred CCchhhHHhHHHHhhhcCCCEEEeCCc--chhhhhhcC
Q 024981 154 VDPVELVVWLPALCRKMEIPYCIVKGK--ARLGVIVHK 189 (259)
Q Consensus 154 vdP~elv~~LpaLC~~~~VPy~~v~sK--~~LG~avGk 189 (259)
.+|.++. .|..++++.+|+++|+..- .++...+-+
T Consensus 223 ps~~~l~-~l~~~ik~~~v~~If~e~~~~~~~~~~ia~ 259 (312)
T 2o1e_A 223 PSAASLA-KLKTYAKEHNVKVIYFEEIASSKVADTLAS 259 (312)
T ss_dssp CCHHHHH-HHHHHTTSSCCCEEECSSCCCHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEeCCCChHHHHHHHH
Confidence 4455554 4788899999999987543 234444433
No 149
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=21.40 E-value=79 Score=25.77 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=47.4
Q ss_pred chHHHHHHHHh-cCccEEEEeCCCCchh--hHHhHHHHhhhcCCCEE--EeCCcchhhhhhcCCCeEEEEEe-ecCc-cc
Q 024981 132 GLNHVTYLIEQ-NKAQLVVIAHDVDPVE--LVVWLPALCRKMEIPYC--IVKGKARLGVIVHKKTASVLCLT-TVKN-ED 204 (259)
Q Consensus 132 G~n~Vtk~Iek-kKAkLVVIA~DvdP~e--lv~~LpaLC~~~~VPy~--~v~sK~~LG~avGkk~~a~Vait-d~g~-eD 204 (259)
+...+.+.++. ....+.||.+.+++.. ....+...++++|+|++ .+.....+..+....... ... +.++ .-
T Consensus 107 ~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v--~~~~~p~~~~~ 184 (209)
T 3cwq_A 107 ALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVV--SEVSDSKAGIA 184 (209)
T ss_dssp HHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCT--TTSSSTTHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCH--HHhCCccchhH
Confidence 44455556665 3456778888887753 33445566667888875 456666777666543211 011 2222 22
Q ss_pred HHHHHHHHHHHHHhh
Q 024981 205 KMEFSRILEAIKANF 219 (259)
Q Consensus 205 k~~l~klve~i~~ny 219 (259)
..++.+|.+.+-...
T Consensus 185 ~~~~~~l~~el~~~~ 199 (209)
T 3cwq_A 185 WSDYKATGKEIVEEI 199 (209)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666655443
No 150
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=21.36 E-value=1.6e+02 Score=24.78 Aligned_cols=49 Identities=10% Similarity=0.136 Sum_probs=29.4
Q ss_pred ceEecch----HHHHHHHHhc--CccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCC
Q 024981 127 IVVKYGL----NHVTYLIEQN--KAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 127 ~~l~~G~----n~Vtk~Iekk--KAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
.++.+|. ..++.++.++ .+.++.+-.|-+. ..+...|+++|||++.+..
T Consensus 7 ~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~----~~v~~~A~~~gIp~~~~~~ 61 (212)
T 3av3_A 7 AVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPG----AKVIERAARENVPAFVFSP 61 (212)
T ss_dssp EEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTT----CHHHHHHHHTTCCEEECCG
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCC----cHHHHHHHHcCCCEEEeCc
Confidence 3455663 3556666666 4566555544211 1245779999999986543
No 151
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=21.33 E-value=92 Score=22.99 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=25.2
Q ss_pred CccEEEEeCCCCchh----hHHhHHHHhhh-cCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDPVE----LVVWLPALCRK-MEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP~e----lv~~LpaLC~~-~~VPy~~v~sK~~LG 184 (259)
.+..+|+.-|++..+ +..++..+... .++|++++.+|.+|-
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 355666666775432 22333333332 489999999999874
No 152
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=21.24 E-value=1e+02 Score=26.80 Aligned_cols=44 Identities=7% Similarity=0.157 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCc------hhhHHhHHHHhhhcCCCEEE
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDP------VELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP------~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.++|.+.+.++|+|.+=-+| .+-...|-++|+++|+.++.
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 567777777567888888542222 23345688999999998764
No 153
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=21.22 E-value=66 Score=24.88 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=27.1
Q ss_pred CccEEEEeCCCCch----hhHHhHHHHhhh-----cCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDPV----ELVVWLPALCRK-----MEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP~----elv~~LpaLC~~-----~~VPy~~v~sK~~LG 184 (259)
.+..+|+.-|++.. ++..++..+... .++|++++.+|.+|-
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 35677777777542 233445555544 589999999999874
No 154
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=21.18 E-value=2.8e+02 Score=21.14 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHhcCcc-EEEEeCCCCchhhHHhHHHHhhhcCC--CEEEeCC-cchhhhhhcCC
Q 024981 140 IEQNKAQ-LVVIAHDVDPVELVVWLPALCRKMEI--PYCIVKG-KARLGVIVHKK 190 (259)
Q Consensus 140 IekkKAk-LVVIA~DvdP~elv~~LpaLC~~~~V--Py~~v~s-K~~LG~avGkk 190 (259)
.+...+. +|.|+.| ++.. +.+.++++++ +|-++.+ ..++.++.|..
T Consensus 66 ~~~~~v~~vv~Is~d-~~~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 66 LKSKGVTEILCISVN-DPFV----MKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHTTCCCEEEEESS-CHHH----HHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHCCCCEEEEEECC-CHHH----HHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 3445677 8888887 3422 4577888898 8876544 55677777754
No 155
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.11 E-value=2.5e+02 Score=20.63 Aligned_cols=53 Identities=8% Similarity=-0.017 Sum_probs=34.3
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhh---hcCCCEEEeCCcc
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCR---KMEIPYCIVKGKA 181 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~---~~~VPy~~v~sK~ 181 (259)
......+....++.....+||+-.+....+-...+..+-+ ..++|++++.+..
T Consensus 36 ~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 36 HVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp EESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 4455677888888899999999876544333333333333 3579998776544
No 156
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.05 E-value=3.8e+02 Score=23.31 Aligned_cols=103 Identities=12% Similarity=0.197 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhc------Ccc-EEEEeCC---CCchhhHHhHHHHhhhcCCCE
Q 024981 105 KERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQN------KAQ-LVVIAHD---VDPVELVVWLPALCRKMEIPY 174 (259)
Q Consensus 105 ~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~Iekk------KAk-LVVIA~D---vdP~elv~~LpaLC~~~~VPy 174 (259)
+.+++..+.+.++|+ -|.+.-.|.+.+..+|+.- -+. ++++..- .++.++..|+.++|+.-++|+
T Consensus 56 r~~v~~~~~~~~~gr-----~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPi 130 (292)
T 2ojp_A 56 HADVVMMTLDLADGR-----IPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQ 130 (292)
T ss_dssp HHHHHHHHHHHHTTS-----SCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHHHHHhCCC-----CcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 355666666555554 4555556665565555431 133 4444432 366789999999999999999
Q ss_pred EEeCC---------cchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHH
Q 024981 175 CIVKG---------KARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAI 215 (259)
Q Consensus 175 ~~v~s---------K~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i 215 (259)
+++.- -+.+.++.. ...+++|-|.. .|-..+..+++..
T Consensus 131 ilYn~P~~tg~~l~~~~~~~La~--~pnivgiK~s~-gd~~~~~~~~~~~ 177 (292)
T 2ojp_A 131 ILYNVPSRTGCDLLPETVGRLAK--VKNIIGIXEAT-GNLTRVNQIKELV 177 (292)
T ss_dssp EEECCHHHHSCCCCHHHHHHHHT--STTEEEC-CCS-CCTHHHHHHHTTS
T ss_pred EEEeCcchhccCCCHHHHHHHHc--CCCEEEEeCCC-CCHHHHHHHHHhc
Confidence 87652 223444442 23577877754 4555566665443
No 157
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=20.99 E-value=81 Score=24.05 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=26.1
Q ss_pred ccEEEEeCCCCch--hhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 145 AQLVVIAHDVDPV--ELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 145 AkLVVIA~DvdP~--elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+.+|++..|++.. .....+.......++|++++.+|.+|
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 4567776675431 22233455667779999999999887
No 158
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=20.90 E-value=1.6e+02 Score=24.41 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCccEEEEeCCCCchh---------hHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 134 NHVTYLIEQNKAQLVVIAHDVDPVE---------LVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvdP~e---------lv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
..++..+...++.+||++.|+.... ....+..+....++|++.+.+.=+.
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEF 99 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 3444455567889999999985432 1122344445568999988877665
No 159
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=20.82 E-value=2.2e+02 Score=22.49 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=32.1
Q ss_pred chHHHHHHHHhcCccEEEEeCCCCch--hhHHhHHHHhhhcCCCEEEeCC
Q 024981 132 GLNHVTYLIEQNKAQLVVIAHDVDPV--ELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~DvdP~--elv~~LpaLC~~~~VPy~~v~s 179 (259)
|....+..++.|++..||+ .+.|-. .....+..+|..+||.++++..
T Consensus 54 ~l~~ll~~~~~g~id~vvv-~~ldRL~R~~~~~l~~~l~~~gv~~~~~~~ 102 (154)
T 3lhk_A 54 NYKKLLKMVMNRKVEKVII-AYPDRLTRFGFETLKEFFKSYGTEIVIINK 102 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEE-SSHHHHCSSCHHHHHHHHHHTTCEEEESCS
T ss_pred HHHHHHHHHHcCCCCEEEE-EeCCcccccHHHHHHHHHHHCCCEEEEEeC
Confidence 6788899999998877665 344321 1123355789999998877554
No 160
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.78 E-value=2.5e+02 Score=20.46 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=35.7
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhh-cCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRK-MEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~-~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+....+-...+..+.+. .++|++++.+...
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 36 TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 44556778888888889999998776443333334444443 3789988766554
No 161
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=20.74 E-value=1.1e+02 Score=28.48 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=29.2
Q ss_pred ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 145 AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
+..+|+--|++..+....+...+.+.++|+++|.+|.+|-
T Consensus 114 aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 114 ADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp CSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 5566666677665555556677778899999999998764
No 162
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=20.70 E-value=87 Score=22.95 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=14.8
Q ss_pred HHhhhcCCCEEEeCCcchhh
Q 024981 165 ALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 165 aLC~~~~VPy~~v~sK~~LG 184 (259)
..+...++|++++.+|.+|-
T Consensus 102 ~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 102 RVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp HHTTTSCCCEEEEEECGGGG
T ss_pred HhcCCCCCCEEEEEECCccc
Confidence 33444689999999999873
No 163
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=20.61 E-value=62 Score=25.16 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=27.0
Q ss_pred CccEEEEeCCCCch----hhHHhHHHHhhh---cCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDPV----ELVVWLPALCRK---MEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP~----elv~~LpaLC~~---~~VPy~~v~sK~~LG 184 (259)
.+..+|+.-|++.. .+..++..+... .++|++++.+|.+|-
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 45677777777532 233445555443 689999999998874
No 164
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=20.54 E-value=2.1e+02 Score=22.35 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=29.4
Q ss_pred HhcCc-cEEEEeCCCCchhhHHhHHHHhhhcCCC--EEEeC-CcchhhhhhcCC
Q 024981 141 EQNKA-QLVVIAHDVDPVELVVWLPALCRKMEIP--YCIVK-GKARLGVIVHKK 190 (259)
Q Consensus 141 ekkKA-kLVVIA~DvdP~elv~~LpaLC~~~~VP--y~~v~-sK~~LG~avGkk 190 (259)
+...+ .+|.|+.| ++.. +.+.++++++| |-++. ...+++++.|..
T Consensus 63 ~~~gv~~vv~Is~d-~~~~----~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 63 HGKGVDIIACMAVN-DSFV----MDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp HHTTCCEEEEEESS-CHHH----HHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHCCCCEEEEEeCC-CHHH----HHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 34457 78888877 3322 45678888888 76554 456777777753
No 165
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.53 E-value=3.6e+02 Score=23.80 Aligned_cols=137 Identities=10% Similarity=0.160 Sum_probs=80.8
Q ss_pred CCcccccccc---cCChhhHHHHHHHhhcCC-------------cc-cHHHHHHHHHHHHHHHHcCCCCCCCCCceEecc
Q 024981 70 VPPALNQFTK---TLDKNLASNLFKMLLKYR-------------PE-DRAAKKERLLKKAQAEAEGKTVESKKPIVVKYG 132 (259)
Q Consensus 70 vpp~inqf~~---~ld~~~a~~l~kl~~kyr-------------PE-~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G 132 (259)
+|+.+--|+. .+|...-.++.+.+-.-- |- |..| +.+++..+.+.++|+ -|.++-.|
T Consensus 16 ~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~v~~~~gr-----vpViaGvg 89 (316)
T 3e96_A 16 SGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEE-AKEEVRRTVEYVHGR-----ALVVAGIG 89 (316)
T ss_dssp EECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHTTS-----SEEEEEEC
T ss_pred EEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhCCC-----CcEEEEeC
Confidence 5777777864 688887777776653211 11 3334 456677776655564 34444344
Q ss_pred hHHHHHHHHh-------cCccEEEEeCC---CCchhhHHhHHHHhhhcCCCEEEeC-----CcchhhhhhcCCCeEEEEE
Q 024981 133 LNHVTYLIEQ-------NKAQLVVIAHD---VDPVELVVWLPALCRKMEIPYCIVK-----GKARLGVIVHKKTASVLCL 197 (259)
Q Consensus 133 ~n~Vtk~Iek-------kKAkLVVIA~D---vdP~elv~~LpaLC~~~~VPy~~v~-----sK~~LG~avGkk~~a~Vai 197 (259)
. .+..+|+. |=-.++++..- .++.+++.|+.++|+.-++|++++. +-+.+.++.. ...+++|
T Consensus 90 ~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~--~pnIvgi 166 (316)
T 3e96_A 90 Y-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAP--LQNLVGV 166 (316)
T ss_dssp S-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTT--CTTEEEE
T ss_pred c-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHc--CCCEEEE
Confidence 3 44444432 32233333222 3667999999999999999998764 2334555552 2357888
Q ss_pred eecCcccHHHHHHHHHHHH
Q 024981 198 TTVKNEDKMEFSRILEAIK 216 (259)
Q Consensus 198 td~g~eDk~~l~klve~i~ 216 (259)
-|.. .|-..+..+++...
T Consensus 167 Kdss-gd~~~~~~~~~~~~ 184 (316)
T 3e96_A 167 KYAI-NDLPRFAKVVRSIP 184 (316)
T ss_dssp EECC-CCHHHHHHHHTTSC
T ss_pred EeCC-CCHHHHHHHHHhcC
Confidence 8875 46666666665544
No 166
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=20.49 E-value=85 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=25.2
Q ss_pred ccEEEEeCCCCc--hhhHHhHHHHhhhcCCCEEEeCCcchh
Q 024981 145 AQLVVIAHDVDP--VELVVWLPALCRKMEIPYCIVKGKARL 183 (259)
Q Consensus 145 AkLVVIA~DvdP--~elv~~LpaLC~~~~VPy~~v~sK~~L 183 (259)
+.+||+.-|++. .+....+..++...++|+++|.+|.+|
T Consensus 116 ~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 116 LCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred cCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 445666666642 223333455666689999999998886
No 167
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=20.44 E-value=94 Score=23.27 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=23.8
Q ss_pred ccEEEEeCCCCch----hhHHhHHHH---hhhcCCCEEEeCCcchhh
Q 024981 145 AQLVVIAHDVDPV----ELVVWLPAL---CRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 145 AkLVVIA~DvdP~----elv~~LpaL---C~~~~VPy~~v~sK~~LG 184 (259)
+..+|+.-|++.. .+..++..+ +...++|++++.+|.+|-
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3455555566543 233333333 234589999999999874
No 168
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=20.43 E-value=70 Score=23.84 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=26.4
Q ss_pred CccEEEEeCCCCch----hhHHhHHHHhhh---cCCCEEEeCCcchhh
Q 024981 144 KAQLVVIAHDVDPV----ELVVWLPALCRK---MEIPYCIVKGKARLG 184 (259)
Q Consensus 144 KAkLVVIA~DvdP~----elv~~LpaLC~~---~~VPy~~v~sK~~LG 184 (259)
.+..+|+.-|++.. +...++..+... .++|++++.+|.+|-
T Consensus 74 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 74 NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 45677777776532 233444444443 689999999998874
No 169
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.41 E-value=2.2e+02 Score=19.56 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=34.8
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCC-chhhHHhHHHHhh---hcCCCEEEeCCcch
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVD-PVELVVWLPALCR---KMEIPYCIVKGKAR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~Dvd-P~elv~~LpaLC~---~~~VPy~~v~sK~~ 182 (259)
......+....++.....+||+-.+.. ..+-...+..+.+ ..++|++.+ +...
T Consensus 34 ~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~ 90 (127)
T 2gkg_A 34 ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPD 90 (127)
T ss_dssp EECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGG
T ss_pred EecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCC
Confidence 444567778888888899999987664 3233333444444 368999888 5544
No 170
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=20.37 E-value=77 Score=23.60 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=25.8
Q ss_pred ccEEEEeCCCCch----hhHHhHHHHhhh---cCCCEEEeCCcchhh
Q 024981 145 AQLVVIAHDVDPV----ELVVWLPALCRK---MEIPYCIVKGKARLG 184 (259)
Q Consensus 145 AkLVVIA~DvdP~----elv~~LpaLC~~---~~VPy~~v~sK~~LG 184 (259)
+..+|+.-|++.. .+..++..+... .++|++++.+|.+|-
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 5566777777543 233444444443 389999999999874
No 171
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=20.29 E-value=83 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=24.4
Q ss_pred ccEEEEeCCCCc---hhhHHhHHHHhhhcCCCEEEeCCcchhh
Q 024981 145 AQLVVIAHDVDP---VELVVWLPALCRKMEIPYCIVKGKARLG 184 (259)
Q Consensus 145 AkLVVIA~DvdP---~elv~~LpaLC~~~~VPy~~v~sK~~LG 184 (259)
+..+|+.-|++. .+....+. .+...++|++++.+|.+|-
T Consensus 79 ~d~~i~v~d~~~~~~~~~~~~l~-~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 79 TDIVILVVAADDGVMPQTVEAIN-HAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHH-HHGGGSCCEEEEEETTTSS
T ss_pred CCEEEEEEECCCCCcHHHHHHHH-HHHhCCCCEEEEEECccCC
Confidence 455666666654 33333333 3345689999999998874
No 172
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=20.28 E-value=2.2e+02 Score=19.62 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=33.2
Q ss_pred ecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcc
Q 024981 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.....+....++.....+||+-.+....+-...+..+.+...+|++++.+..
T Consensus 32 ~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 32 TASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred ecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 3344667778888889999998766443333434455555568887765433
No 173
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=20.23 E-value=3.2e+02 Score=21.47 Aligned_cols=92 Identities=14% Similarity=0.033 Sum_probs=48.2
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHH
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEF 208 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l 208 (259)
...+..++..++.+|++..++....+ . ..+.++.+- +.++.. .+.. .......++++... +....
T Consensus 164 ~~~~~~~~~~~l~~G~vDa~~~~~~~----~----~~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~k~---~~~l~ 228 (268)
T 3qax_A 164 SFDSTLEVIMEVRYGKSPVAVLEPSV----G----RVVLKDFPN-LVATRL--ELPP-ECWVLGCGLGVAKD---RPEEI 228 (268)
T ss_dssp EESCHHHHHHHHHTTSSSEEEECHHH----H----HHHGGGCTT-EEEEEE--ECCG-GGCBCCEEEEECTT---CHHHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHH----H----HHHHHhCCC-cEEecC--ccCc-ccccccEEEEEeCC---CHHHH
Confidence 44578889999999999987654321 1 122233322 222221 0100 00001145555543 33334
Q ss_pred HHHHHHHHHhhh-hhhhhhhhccCCCCC
Q 024981 209 SRILEAIKANFN-DKYDEHRKKWGGGIM 235 (259)
Q Consensus 209 ~klve~i~~nyn-d~y~e~~~~wgg~~l 235 (259)
+.+-+++..... ..|++|..+|++...
T Consensus 229 ~~l~~~l~~l~~~g~~~~i~~k~~~~~~ 256 (268)
T 3qax_A 229 QTIQQAITDLKSEGVIQSLTKKWQLSEV 256 (268)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHcCCcc
Confidence 444455554433 578999999998653
No 174
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=20.20 E-value=2.3e+02 Score=20.87 Aligned_cols=52 Identities=6% Similarity=-0.137 Sum_probs=29.2
Q ss_pred ccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCc----chhhhhhcCCCeEEEEEeec
Q 024981 145 AQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK----ARLGVIVHKKTASVLCLTTV 200 (259)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK----~~LG~avGkk~~a~Vaitd~ 200 (259)
+.+|.|..|-++.+ +...++++++++..+.+. .+|....|....-++.|+|.
T Consensus 63 ~~vv~v~~d~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~ 118 (152)
T 2lrn_A 63 FTIYGVSTDRREED----WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDP 118 (152)
T ss_dssp EEEEEEECCSCHHH----HHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECT
T ss_pred eEEEEEEccCCHHH----HHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECC
Confidence 45555555544333 345566778887765553 56777777664333344443
No 175
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=20.13 E-value=1.6e+02 Score=27.89 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=18.3
Q ss_pred hHHHHHHHHhcCccEEEEeCCCC
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvd 155 (259)
...+...+...++.+|||+.|+-
T Consensus 60 l~~ll~~~~~~~~D~VliaGDlf 82 (431)
T 3t1i_A 60 LDEILRLAQENEVDFILLGGDLF 82 (431)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCB
T ss_pred HHHHHHHHhhcCCCEEEEcCccc
Confidence 35566677778899999999984
No 176
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=20.07 E-value=2.7e+02 Score=21.26 Aligned_cols=90 Identities=10% Similarity=0.051 Sum_probs=48.1
Q ss_pred EecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHH
Q 024981 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEF 208 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l 208 (259)
......++..++.+|++..++....+ +..+.+..+ .+.++... +...--......+++... +...+
T Consensus 138 ~~~~~~~~~~~l~~grvDa~~~~~~~--------~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~l~ 203 (229)
T 2y7i_A 138 AYDSYLNAFTDLKNNRLEGVFGDVAA--------IGKWLKNNP-DYAIMDER--ASDPDYYGKGLGIAVRKD---NDALL 203 (229)
T ss_dssp EESCHHHHHHHHHTTSCSEEEEEHHH--------HHHHHTTCT-TEEECSCC--BCCTTTSCCCBCCEECTT---CHHHH
T ss_pred ecCCHHHHHHHHHcCCcCEEEechHH--------HHHHHHhCC-CeEEeccc--cccccccccceEEEEeCC---CHHHH
Confidence 34567889999999999987765421 122334444 34443321 100000001233444332 34444
Q ss_pred HHHHHHHHHhhhh-hhhhhhhccCC
Q 024981 209 SRILEAIKANFND-KYDEHRKKWGG 232 (259)
Q Consensus 209 ~klve~i~~nynd-~y~e~~~~wgg 232 (259)
+.+-+++...-.| .|++|..+|.|
T Consensus 204 ~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 204 QEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcC
Confidence 5555555555555 78999999986
No 177
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=20.06 E-value=1.1e+02 Score=26.49 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCccEEEEeCCCCchh-hHHhHHHHhhhcCCCEEE
Q 024981 133 LNHVTYLIEQNKAQLVVIAHDVDPVE-LVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvdP~e-lv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.++|...+.++|++.....+.. -...|..+|+++|+.++.
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~ 196 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV 196 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 45677778764678888843222221 135688999999997764
No 178
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=20.05 E-value=99 Score=26.74 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=19.7
Q ss_pred CccEEEEeCCCCchh---hHHhHHHHhhhcCCCEEEeCCcc
Q 024981 144 KAQLVVIAHDVDPVE---LVVWLPALCRKMEIPYCIVKGKA 181 (259)
Q Consensus 144 KAkLVVIA~DvdP~e---lv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
...+||+.+=+|-.+ +......+++..|+|++.+..+.
T Consensus 107 ~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~ 147 (272)
T 3b1v_A 107 GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALK 147 (272)
T ss_dssp CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTT
T ss_pred CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccC
Confidence 445555555443211 11124567777778877665544
No 179
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=20.04 E-value=2.7e+02 Score=20.47 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=22.1
Q ss_pred hHHHHhhhcCCCEEEeCCcc------hhhhhhcCCCeEEEEEee
Q 024981 162 WLPALCRKMEIPYCIVKGKA------RLGVIVHKKTASVLCLTT 199 (259)
Q Consensus 162 ~LpaLC~~~~VPy~~v~sK~------~LG~avGkk~~a~Vaitd 199 (259)
.+...+++++++|-.+.+.. ++....|....-+..|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid 125 (158)
T 3eyt_A 82 SLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID 125 (158)
T ss_dssp HHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEEC
T ss_pred HHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEEC
Confidence 35677888888875443322 477777765432333444
Done!