BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024982
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 141 VKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200
+K D ++ +C E++R+ +++GSRG G R +G+VS +CV H CPV+ ++
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLG---RFQKVFVGTVSAFCVKHAECPVMTIKR 163
Query: 201 PDDKDDGEP 209
D+ +P
Sbjct: 164 NADETPSDP 172
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 23/156 (14%)
Query: 46 VAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIE 105
+ +DLS ES A WAV LR GD +I+V V I ++ S
Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVDV------------------IECDDPSARA 476
Query: 106 HQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHI-VKDHDMRERLCLE-IERLSLSAVI 163
+ ++E + + + L + +++I V H+ + L +E I+ + S V+
Sbjct: 477 VKDRMESEQLETLEKITKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMIDYIEPSLVV 536
Query: 164 MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199
MGSRG K LGS S+Y V+ PV+V R
Sbjct: 537 MGSRGRSHLK---GVLLGSFSNYLVNKSSVPVMVAR 569
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-----PTSVLFGADWGPLPQQQIN 97
K+ VA+D SD SA A+ AVH + ++HV TS L G + +P+ I+
Sbjct: 4 KMLVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVY--VPEHFID 61
Query: 98 S-ENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIER 156
N E K LE+ + A + A + G P H + +H +E+
Sbjct: 62 EIRNEVKKEGLKILENAKE--KAAEKGVQAETIYANGEPA--HEILNH-AKEK------- 109
Query: 157 LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199
+S +++GSRG K + LGSVS CPV++VR
Sbjct: 110 -GVSLIVVGSRGISGLK---EMMLGSVSHKVSQLSTCPVLIVR 148
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200
V++G RG K ++ LGSVS Y +HH C V++V++
Sbjct: 119 VVLGRRGL---KGLAEVFLGSVSSYVIHHVQCSVLIVQH 154
>sp|A4IIK7|NDNF_XENTR Protein NDNF OS=Xenopus tropicalis GN=ndnf PE=2 SV=2
Length = 570
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 2 NPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPT-SLARRKIGVAVDLSDESAFAVRW 60
P+ QP + P+ P + + + T T A PTPT S+ ++ I V ++ E F
Sbjct: 166 TPESDQPYPELPYDPRVDVTSLGRTTVTLAWKPTPTSSVMKQPIQYCVVINKEHNFKSIC 225
Query: 61 AVHHYLRPGDAVILV 75
AV + DA ++V
Sbjct: 226 AVEAKMNADDAFMMV 240
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202
V++GS G GA RG LGSVS V CPV V+ D
Sbjct: 114 VVLGSSGRGALARG---LLGSVSSSLVRRAGCPVAVIHSDD 151
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202
V++GS G GA RG LGSVS V CPV V+ D
Sbjct: 114 VVLGSSGRGALARG---LLGSVSSSLVRRAGCPVAVIHSDD 151
>sp|O74782|YGBA_SCHPO Universal stress protein A family protein C25B2.10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC25B2.10 PE=1 SV=1
Length = 307
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Query: 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGD-AVILVHVSPTSVLFGADWGPLPQQQINSEN 100
R +D + S AV W L D AV+L + P+S L +E+
Sbjct: 140 RTFLCGMDGNSYSEVAVDWLFETLLADNDEAVVLRVIDPSSKL--------------AED 185
Query: 101 ASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLS 160
S+ + + L + K D K ++ + K DM + I S
Sbjct: 186 LSDEQSYRSLAEHIMAGILKKVDDD----KAVSIIVELVVGKPQDM---ILRTIHVYSPD 238
Query: 161 AVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204
++I+G+RG S GSVS +C+ PV+VVR PD K
Sbjct: 239 SLIVGTRGKALNSFQSLLSSGSVSKFCLQKSPIPVIVVR-PDRK 281
>sp|Q8TB73|NDNF_HUMAN Protein NDNF OS=Homo sapiens GN=NDNF PE=2 SV=2
Length = 568
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 2 NPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPT-SLARRKIGVAVDLSDESAFAVRW 60
P+ QP + P+ P + + + T T A P+PT SL ++ I V ++ E F
Sbjct: 166 TPESDQPYPELPYDPRVDVTSLGRTTVTLAWKPSPTASLLKQPIQYCVVINKEHNFKSLC 225
Query: 61 AVHHYLRPGDAVILV 75
AV L DA ++
Sbjct: 226 AVEAKLSADDAFMMA 240
>sp|A6Q3Y5|TGT_NITSB Queuine tRNA-ribosyltransferase OS=Nitratiruptor sp. (strain
SB155-2) GN=tgt PE=3 SV=1
Length = 373
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 11/149 (7%)
Query: 20 IHNPSANTTTPAATPTPTSLARRKIGVAVDLSD--ESAFAVRWAVHHYLRPGDAVI---- 73
I + TP P T+ + + + VDL D ++ + H YLRPGD V+
Sbjct: 17 IKTSHSTIKTPVFMPVGTAASVKSLDT-VDLRDILQTQIILANTYHLYLRPGDNVVKKLG 75
Query: 74 -LVHVSPTSVLFGADWG---PLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPL 129
L + + F D G I+ N IE Q ++ FT K D+ L
Sbjct: 76 GLHGFTGYNRSFLTDSGGFQAFSLSDISKANERGIEFQSHIDGSKHFFTPQKVLDIQYNL 135
Query: 130 KEAGFPYKIHIVKDHDMRERLCLEIERLS 158
+V +ERL L ++R +
Sbjct: 136 GSDIMMILDDLVALPATKERLALSVDRTT 164
>sp|O07672|FTSA_ENTHR Cell division protein FtsA OS=Enterococcus hirae GN=ftsA PE=3 SV=1
Length = 442
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 189 HHCVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRKLKGFFFLFF 237
HH V Y +D D EPE+ D+ V K+KGFF F
Sbjct: 393 HHTTVEQEVTSYDNDSYDAPEETVYDEPEQKKSDEDVTTKIKGFFSKIF 441
>sp|A3LPW2|FYV10_PICST Protein FYV10 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=FYV10 PE=3 SV=2
Length = 511
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 105 EHQKQLEDDFDTF-------TATKAADLARPLKE-AGFPYKIH--IVKDHDMRERLCLEI 154
+ +KQ+ DD TA K A + + +K GF K+ I KD ++R RL I
Sbjct: 37 KQKKQMTDDVAKIKKNPNIPTAMKLAMVRKSIKSFEGFQKKLQASIAKDEELRSRLIARI 96
Query: 155 ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVK 214
E L+L +S+YC+ V + + E + +
Sbjct: 97 EHLAL-----------------------ISEYCITQDKTKTQVEKPSQPQSQNEDTEEKE 133
Query: 215 EPEKDDEDDHVD 226
KDD D ++D
Sbjct: 134 HSTKDDNDKYLD 145
>sp|Q4L751|Y1215_STAHJ Putative universal stress protein SH1215 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH1215 PE=3 SV=1
Length = 165
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 157 LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKEP 216
L + ++ G+ G A +R +GSVS+ V H C V+VVR + +D +P V E
Sbjct: 104 LGVDLIMCGTSGLNAVERFI---VGSVSEAIVRHAPCDVLVVRTEEIPEDFQPEVATPEF 160
Query: 217 EK 218
K
Sbjct: 161 RK 162
>sp|Q32KH9|ARSG_CANFA Arylsulfatase G OS=Canis familiaris GN=ARSG PE=2 SV=1
Length = 535
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 99 ENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLS 158
EN + +E L + A KA + +G P+ +++ H + + I R
Sbjct: 205 ENLNIVEQPVNLSSLAHKY-AEKAIQFIQHASASGRPFLLYMGLAH-----MHVPISRTQ 258
Query: 159 LSAVIMGSRGFGAEKRGSDGKLGSVSD 185
LSAV+ G R +GA R D +G + D
Sbjct: 259 LSAVLRGRRPYGAGLREMDSLVGQIKD 285
>sp|Q49YE0|Y1056_STAS1 Putative universal stress protein SSP1056 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1056 PE=3 SV=1
Length = 167
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKE 215
++ G+ G A +R +GSVS+ V H C V+VVR + +D +P V E
Sbjct: 109 IMCGTSGLNAVERFI---VGSVSEAIVRHSPCDVLVVRTEELPEDFQPQVATDE 159
>sp|A9QYT2|ALR_YERPG Alanine racemase OS=Yersinia pestis bv. Antiqua (strain Angola)
GN=alr PE=3 SV=1
Length = 359
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 54 SAFAVRWAVHH--YLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQ 107
S +RW H ++RPG ++L VSP +G D+G LP + S + EH+
Sbjct: 194 SGGILRWPQAHRDWVRPG--IVLYGVSPFDAPYGRDFGLLPAMTLKSSLIAVREHK 247
>sp|Q8ZJ10|ALR1_YERPE Alanine racemase 1 OS=Yersinia pestis GN=alr1 PE=3 SV=1
Length = 359
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 54 SAFAVRWAVHH--YLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQ 107
S +RW H ++RPG ++L VSP +G D+G LP + S + EH+
Sbjct: 194 SGGILRWPQAHRDWVRPG--IVLYGVSPFDAPYGRDFGLLPAMTLKSSLIAVREHK 247
>sp|Q8CS61|Y1385_STAES Putative universal stress protein SE_1385 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1385 PE=3 SV=1
Length = 166
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLV 211
++ G+ G A +R +GSVS+ V H C V+VVR + +D +P V
Sbjct: 109 IMSGTSGLNAVERFI---VGSVSEAIVRHAPCDVLVVRTEEMPEDFQPQV 155
>sp|Q5HNJ5|Y1273_STAEQ Putative universal stress protein SERP1273 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1273 PE=3
SV=1
Length = 166
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLV 211
++ G+ G A +R +GSVS+ V H C V+VVR + +D +P V
Sbjct: 109 IMSGTSGLNAVERFI---VGSVSEAIVRHAPCDVLVVRTEEMPEDFQPQV 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,826,205
Number of Sequences: 539616
Number of extensions: 4645210
Number of successful extensions: 15090
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 15056
Number of HSP's gapped (non-prelim): 57
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)