Query 024982
Match_columns 259
No_of_seqs 167 out of 1830
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11175 universal stress prot 99.9 4.8E-25 1E-29 194.2 17.4 175 39-229 1-175 (305)
2 PRK15456 universal stress prot 99.9 8.5E-24 1.8E-28 166.2 16.2 140 40-199 1-142 (142)
3 PRK15005 universal stress prot 99.9 7E-24 1.5E-28 166.7 15.5 142 40-199 1-144 (144)
4 cd01989 STK_N The N-terminal d 99.9 1.5E-23 3.3E-28 165.2 17.4 142 43-200 1-145 (146)
5 PRK11175 universal stress prot 99.9 2.6E-23 5.7E-28 183.1 14.7 165 4-201 128-301 (305)
6 PRK09982 universal stress prot 99.9 7.5E-23 1.6E-27 161.1 13.4 139 40-201 2-140 (142)
7 PRK15118 universal stress glob 99.9 2.1E-22 4.5E-27 158.5 14.6 139 40-201 2-140 (144)
8 PRK10116 universal stress prot 99.9 6E-22 1.3E-26 155.4 15.5 139 40-201 2-140 (142)
9 PF00582 Usp: Universal stress 99.9 7.3E-22 1.6E-26 152.1 15.6 140 40-199 1-140 (140)
10 cd01988 Na_H_Antiporter_C The 99.9 6.1E-21 1.3E-25 147.1 14.2 132 43-199 1-132 (132)
11 cd01987 USP_OKCHK USP domain i 99.8 5.2E-20 1.1E-24 141.0 12.7 123 43-199 1-124 (124)
12 cd00293 USP_Like Usp: Universa 99.8 5.5E-18 1.2E-22 129.0 15.2 130 43-198 1-130 (130)
13 COG0589 UspA Universal stress 99.8 7.4E-17 1.6E-21 126.9 17.6 149 39-201 3-153 (154)
14 PRK10490 sensor protein KdpD; 99.6 5.7E-15 1.2E-19 147.2 14.7 181 37-258 246-443 (895)
15 COG2205 KdpD Osmosensitive K+ 99.6 2.1E-14 4.5E-19 136.5 12.0 187 37-258 244-440 (890)
16 PRK12652 putative monovalent c 99.5 3E-13 6.5E-18 121.0 16.8 149 38-208 2-159 (357)
17 cd01984 AANH_like Adenine nucl 98.4 1.5E-06 3.2E-11 62.0 7.8 84 44-197 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.8 0.0013 2.9E-08 65.7 17.4 177 7-201 600-795 (832)
19 PLN03159 cation/H(+) antiporte 97.3 0.0056 1.2E-07 61.3 14.6 148 41-200 458-615 (832)
20 TIGR02432 lysidine_TilS_N tRNA 96.6 0.035 7.5E-07 45.3 11.2 98 43-173 1-114 (189)
21 PF01171 ATP_bind_3: PP-loop f 96.1 0.1 2.2E-06 42.4 10.8 99 43-174 1-112 (182)
22 cd01992 PP-ATPase N-terminal d 95.4 0.24 5.1E-06 40.0 10.5 38 43-80 1-38 (185)
23 PRK12342 hypothetical protein; 94.9 0.31 6.7E-06 42.0 10.0 103 48-196 31-140 (254)
24 PRK03359 putative electron tra 94.1 1.1 2.3E-05 38.8 11.5 102 49-196 33-143 (256)
25 cd01993 Alpha_ANH_like_II This 93.5 0.9 2E-05 36.5 9.7 38 43-80 1-40 (185)
26 PF01012 ETF: Electron transfe 93.0 1.8 4E-05 34.2 10.6 106 43-196 1-118 (164)
27 PRK06029 3-octaprenyl-4-hydrox 92.4 1.1 2.4E-05 36.7 8.6 35 41-75 1-35 (185)
28 TIGR00591 phr2 photolyase PhrI 90.7 3 6.4E-05 39.0 10.7 96 44-167 25-122 (454)
29 PRK07313 phosphopantothenoylcy 90.3 2.3 4.9E-05 34.7 8.4 34 41-75 1-34 (182)
30 COG0037 MesJ tRNA(Ile)-lysidin 89.9 2.2 4.7E-05 37.2 8.7 39 41-81 21-59 (298)
31 COG2086 FixA Electron transfer 89.5 7.3 0.00016 33.7 11.2 105 47-198 32-144 (260)
32 PRK10696 tRNA 2-thiocytidine b 89.1 10 0.00022 32.6 12.0 40 41-80 29-70 (258)
33 PRK05579 bifunctional phosphop 88.7 4.2 9.2E-05 37.4 9.8 119 38-199 3-123 (399)
34 cd01712 ThiI ThiI is required 88.2 12 0.00026 30.0 11.5 35 43-81 1-35 (177)
35 cd01985 ETF The electron trans 87.4 10 0.00022 30.5 10.5 24 146-169 79-102 (181)
36 PF00448 SRP54: SRP54-type pro 87.2 7 0.00015 32.2 9.5 111 45-199 6-121 (196)
37 COG0041 PurE Phosphoribosylcar 87.2 4.4 9.6E-05 32.0 7.6 67 125-202 21-90 (162)
38 TIGR02113 coaC_strep phosphopa 86.9 5.2 0.00011 32.5 8.3 33 42-75 1-33 (177)
39 KOG1650 Predicted K+/H+-antipo 86.5 5.1 0.00011 40.1 9.6 72 7-82 584-655 (769)
40 TIGR00268 conserved hypothetic 85.9 12 0.00026 32.0 10.5 37 40-80 11-47 (252)
41 TIGR00342 thiazole biosynthesi 85.7 16 0.00034 33.3 11.7 37 40-80 171-207 (371)
42 PF02441 Flavoprotein: Flavopr 85.7 1.6 3.4E-05 33.3 4.5 114 42-201 1-119 (129)
43 PRK13982 bifunctional SbtC-lik 85.3 10 0.00022 35.8 10.4 122 38-202 67-190 (475)
44 PRK13820 argininosuccinate syn 84.7 18 0.00038 33.3 11.5 37 41-80 2-39 (394)
45 PRK10660 tilS tRNA(Ile)-lysidi 84.4 9.8 0.00021 35.5 10.0 41 41-81 15-56 (436)
46 cd01995 ExsB ExsB is a transcr 84.2 18 0.00039 28.5 10.3 34 43-80 1-34 (169)
47 COG0541 Ffh Signal recognition 84.1 28 0.00061 32.4 12.4 93 44-175 104-199 (451)
48 PRK05253 sulfate adenylyltrans 83.2 21 0.00046 31.6 11.1 41 41-81 27-67 (301)
49 TIGR01162 purE phosphoribosyla 82.4 9.1 0.0002 30.4 7.6 67 125-202 17-86 (156)
50 PLN00200 argininosuccinate syn 81.6 40 0.00086 31.2 12.6 37 41-80 5-41 (404)
51 TIGR03556 photolyase_8HDF deox 81.6 12 0.00026 35.3 9.4 90 49-167 10-99 (471)
52 TIGR00521 coaBC_dfp phosphopan 80.7 19 0.00042 33.0 10.2 117 41-200 3-120 (390)
53 TIGR02852 spore_dpaB dipicolin 80.6 7.8 0.00017 31.8 6.9 34 42-76 1-35 (187)
54 cd01714 ETF_beta The electron 79.7 17 0.00037 30.0 8.8 33 46-78 29-61 (202)
55 TIGR00421 ubiX_pad polyprenyl 79.4 32 0.00069 28.0 10.1 32 43-75 1-32 (181)
56 cd01986 Alpha_ANH_like Adenine 78.5 21 0.00045 25.7 8.1 34 44-81 1-34 (103)
57 PF00875 DNA_photolyase: DNA p 77.8 14 0.0003 29.2 7.5 116 52-201 11-126 (165)
58 COG0552 FtsY Signal recognitio 77.5 36 0.00079 30.5 10.5 93 44-175 143-238 (340)
59 PRK14665 mnmA tRNA-specific 2- 76.6 48 0.001 30.1 11.4 36 40-79 4-39 (360)
60 TIGR02765 crypto_DASH cryptoch 76.5 19 0.00041 33.3 9.1 96 49-167 10-105 (429)
61 PRK00509 argininosuccinate syn 76.2 22 0.00047 32.8 9.1 37 41-80 2-38 (399)
62 PF00731 AIRC: AIR carboxylase 75.2 17 0.00037 28.7 7.1 66 126-202 20-88 (150)
63 TIGR00884 guaA_Cterm GMP synth 74.6 56 0.0012 29.0 11.1 37 42-81 17-53 (311)
64 cd01713 PAPS_reductase This do 74.6 37 0.0008 26.1 10.8 37 43-80 1-37 (173)
65 cd01990 Alpha_ANH_like_I This 74.4 45 0.00098 27.1 10.4 34 44-80 1-34 (202)
66 PRK10867 signal recognition pa 72.2 56 0.0012 30.5 10.9 91 47-175 107-200 (433)
67 COG1606 ATP-utilizing enzymes 71.2 60 0.0013 28.0 9.9 39 40-81 16-54 (269)
68 PF02601 Exonuc_VII_L: Exonucl 70.5 15 0.00033 32.4 6.7 66 133-201 43-116 (319)
69 PRK12563 sulfate adenylyltrans 70.3 64 0.0014 28.7 10.3 42 41-82 37-78 (312)
70 PRK00919 GMP synthase subunit 69.8 78 0.0017 28.1 10.8 37 42-81 22-58 (307)
71 TIGR00032 argG argininosuccina 68.7 72 0.0016 29.4 10.7 34 43-80 1-34 (394)
72 COG0299 PurN Folate-dependent 68.7 66 0.0014 26.6 9.9 146 42-230 1-170 (200)
73 PF02844 GARS_N: Phosphoribosy 66.4 5.9 0.00013 29.0 2.6 23 145-167 49-71 (100)
74 PF03746 LamB_YcsF: LamB/YcsF 66.2 84 0.0018 26.9 11.5 129 38-197 24-161 (242)
75 cd01715 ETF_alpha The electron 66.2 64 0.0014 25.5 9.0 25 146-170 71-95 (168)
76 TIGR00959 ffh signal recogniti 65.4 93 0.002 29.0 10.8 92 45-174 104-198 (428)
77 cd01997 GMP_synthase_C The C-t 64.0 94 0.002 27.4 10.2 35 43-80 1-35 (295)
78 TIGR02039 CysD sulfate adenyly 63.8 1E+02 0.0023 27.1 11.9 41 41-81 19-59 (294)
79 TIGR00930 2a30 K-Cl cotranspor 63.5 1.3E+02 0.0028 31.2 12.4 97 42-168 576-677 (953)
80 PRK08185 hypothetical protein; 63.5 15 0.00032 32.2 5.0 70 129-201 8-77 (283)
81 PRK08349 hypothetical protein; 63.3 63 0.0014 26.3 8.6 34 42-79 1-34 (198)
82 TIGR02766 crypt_chrom_pln cryp 62.7 59 0.0013 30.5 9.3 90 49-167 7-96 (475)
83 PRK10674 deoxyribodipyrimidine 61.6 62 0.0014 30.5 9.2 92 49-167 11-105 (472)
84 PF13167 GTP-bdg_N: GTP-bindin 60.3 63 0.0014 23.4 7.4 43 143-196 42-84 (95)
85 KOG1467 Translation initiation 59.2 1.5E+02 0.0034 28.0 10.8 74 128-213 405-482 (556)
86 COG0452 Dfp Phosphopantothenoy 59.2 28 0.00061 32.0 6.2 36 40-76 3-38 (392)
87 PRK14664 tRNA-specific 2-thiou 59.1 1.2E+02 0.0025 27.7 10.1 35 40-78 4-38 (362)
88 cd02067 B12-binding B12 bindin 58.7 40 0.00087 24.8 6.1 44 126-171 20-63 (119)
89 PRK00109 Holliday junction res 57.7 15 0.00033 28.4 3.7 53 146-201 42-98 (138)
90 PRK08227 autoinducer 2 aldolas 57.6 1.2E+02 0.0026 26.3 9.5 67 122-201 129-201 (264)
91 TIGR02699 archaeo_AfpA archaeo 57.4 1E+02 0.0022 24.9 9.8 33 43-75 1-34 (174)
92 PRK00074 guaA GMP synthase; Re 56.9 1.5E+02 0.0032 28.3 10.9 36 42-80 216-251 (511)
93 TIGR01425 SRP54_euk signal rec 56.9 1.3E+02 0.0027 28.2 10.1 92 45-175 105-199 (429)
94 PRK06801 hypothetical protein; 56.5 30 0.00066 30.3 5.7 72 127-201 11-83 (286)
95 PRK05406 LamB/YcsF family prot 56.3 99 0.0021 26.5 8.6 124 43-197 31-163 (246)
96 PRK08305 spoVFB dipicolinate s 55.6 31 0.00067 28.5 5.3 36 39-75 3-39 (196)
97 PRK08745 ribulose-phosphate 3- 55.3 71 0.0015 26.9 7.6 36 130-167 166-201 (223)
98 PRK05370 argininosuccinate syn 54.6 1.7E+02 0.0037 27.4 10.4 37 40-80 10-46 (447)
99 cd02071 MM_CoA_mut_B12_BD meth 54.5 88 0.0019 23.3 8.6 35 43-77 1-35 (122)
100 PRK00286 xseA exodeoxyribonucl 54.3 43 0.00093 31.1 6.7 66 134-202 165-234 (438)
101 PRK12569 hypothetical protein; 54.2 1.1E+02 0.0023 26.3 8.4 123 44-197 35-166 (245)
102 TIGR00237 xseA exodeoxyribonuc 53.9 49 0.0011 30.8 7.0 67 133-202 158-229 (432)
103 COG1066 Sms Predicted ATP-depe 53.2 1.2E+02 0.0027 28.2 9.1 115 42-200 94-218 (456)
104 PRK12857 fructose-1,6-bisphosp 53.0 34 0.00074 30.0 5.5 73 127-201 11-83 (284)
105 PRK00994 F420-dependent methyl 52.5 1.1E+02 0.0023 26.3 8.0 68 146-236 48-116 (277)
106 PRK12737 gatY tagatose-bisphos 52.2 35 0.00076 29.9 5.4 73 127-201 11-83 (284)
107 cd00946 FBP_aldolase_IIA Class 51.4 46 0.00099 30.1 6.1 78 125-202 7-97 (345)
108 PRK08091 ribulose-phosphate 3- 51.1 92 0.002 26.4 7.6 36 130-167 174-209 (228)
109 COG0420 SbcD DNA repair exonuc 50.3 23 0.00049 32.3 4.2 22 146-167 28-49 (390)
110 COG0036 Rpe Pentose-5-phosphat 50.2 99 0.0021 26.0 7.5 31 135-167 169-199 (220)
111 TIGR01858 tag_bisphos_ald clas 50.2 41 0.00089 29.5 5.5 72 128-201 10-81 (282)
112 PRK09722 allulose-6-phosphate 50.0 1.2E+02 0.0025 25.7 8.1 40 126-167 160-199 (229)
113 PRK04527 argininosuccinate syn 49.9 2.1E+02 0.0047 26.4 10.9 35 42-80 3-37 (400)
114 COG1597 LCB5 Sphingosine kinas 49.6 90 0.0019 27.5 7.7 70 125-203 25-94 (301)
115 PRK14057 epimerase; Provisiona 49.3 1.1E+02 0.0023 26.4 7.8 40 126-167 184-223 (254)
116 PRK05920 aromatic acid decarbo 48.8 41 0.00088 28.0 5.1 35 40-75 2-36 (204)
117 PRK00143 mnmA tRNA-specific 2- 48.8 2E+02 0.0044 25.8 10.9 34 42-79 1-34 (346)
118 TIGR00250 RNAse_H_YqgF RNAse H 48.8 46 0.001 25.4 5.1 54 145-201 35-92 (130)
119 PHA02031 putative DnaG-like pr 48.6 65 0.0014 28.0 6.3 36 42-77 207-242 (266)
120 PF02310 B12-binding: B12 bind 48.1 1.1E+02 0.0023 22.3 7.3 41 125-167 20-60 (121)
121 PRK13337 putative lipid kinase 47.9 95 0.0021 27.1 7.6 68 128-204 27-95 (304)
122 cd03364 TOPRIM_DnaG_primases T 47.7 53 0.0012 22.3 4.8 35 41-75 43-77 (79)
123 PRK09197 fructose-bisphosphate 47.6 58 0.0013 29.5 6.1 74 127-202 14-102 (350)
124 COG0191 Fba Fructose/tagatose 47.1 42 0.0009 29.4 5.0 74 126-202 10-85 (286)
125 PF03652 UPF0081: Uncharacteri 47.0 33 0.00071 26.4 4.0 56 144-202 37-97 (135)
126 PF12683 DUF3798: Protein of u 46.4 72 0.0016 27.7 6.2 93 43-169 4-97 (275)
127 PF09436 DUF2016: Domain of un 46.1 20 0.00042 24.6 2.2 48 10-65 4-53 (72)
128 PRK13010 purU formyltetrahydro 46.0 1.7E+02 0.0038 25.6 8.8 144 41-229 93-259 (289)
129 PRK12738 kbaY tagatose-bisphos 45.9 51 0.0011 29.0 5.4 72 127-201 11-83 (286)
130 TIGR02855 spore_yabG sporulati 45.8 70 0.0015 27.9 6.0 41 127-167 122-162 (283)
131 cd00947 TBP_aldolase_IIB Tagat 45.5 44 0.00095 29.2 5.0 73 128-202 7-79 (276)
132 PF05582 Peptidase_U57: YabG p 45.4 65 0.0014 28.2 5.9 41 127-167 123-163 (287)
133 PF13662 Toprim_4: Toprim doma 45.0 38 0.00083 23.2 3.8 34 41-74 46-79 (81)
134 COG1646 Predicted phosphate-bi 44.7 1.5E+02 0.0032 25.3 7.7 54 145-203 28-81 (240)
135 PRK06806 fructose-bisphosphate 44.4 68 0.0015 28.0 6.0 73 127-201 11-83 (281)
136 TIGR00655 PurU formyltetrahydr 43.7 2.2E+02 0.0048 24.8 11.3 37 40-77 83-119 (280)
137 PLN02948 phosphoribosylaminoim 43.5 1E+02 0.0023 29.9 7.6 66 125-201 429-497 (577)
138 PF04244 DPRP: Deoxyribodipyri 43.2 97 0.0021 26.1 6.5 78 118-203 47-128 (224)
139 PRK09195 gatY tagatose-bisphos 42.6 56 0.0012 28.6 5.2 71 129-201 13-83 (284)
140 PRK00766 hypothetical protein; 42.4 70 0.0015 26.4 5.4 59 133-198 42-104 (194)
141 PRK07998 gatY putative fructos 42.3 52 0.0011 28.9 4.9 73 127-201 11-83 (283)
142 PF02568 ThiI: Thiamine biosyn 42.2 1.7E+02 0.0037 24.1 7.7 36 42-81 4-39 (197)
143 cd01125 repA Hexameric Replica 42.1 2E+02 0.0044 23.9 11.2 59 146-204 99-161 (239)
144 cd01999 Argininosuccinate_Synt 41.8 2.5E+02 0.0054 25.8 9.5 34 44-80 1-34 (385)
145 cd08550 GlyDH-like Glycerol_de 41.2 1.4E+02 0.0029 26.8 7.7 64 127-201 43-110 (349)
146 COG0137 ArgG Argininosuccinate 41.1 2.9E+02 0.0063 25.4 12.6 114 39-171 2-125 (403)
147 COG2201 CheB Chemotaxis respon 39.5 81 0.0018 28.6 5.8 47 147-200 36-82 (350)
148 COG1540 Uncharacterized protei 39.5 1.5E+02 0.0033 25.3 7.0 107 45-169 33-148 (252)
149 TIGR03702 lip_kinase_YegS lipi 39.1 1.2E+02 0.0026 26.3 6.9 68 129-205 23-93 (293)
150 PRK13399 fructose-1,6-bisphosp 39.1 76 0.0017 28.7 5.6 75 125-201 9-84 (347)
151 cd00532 MGS-like MGS-like doma 38.9 1.3E+02 0.0028 22.0 6.1 63 132-197 41-104 (112)
152 TIGR01859 fruc_bis_ald_ fructo 38.9 73 0.0016 27.8 5.4 72 127-200 9-82 (282)
153 cd03557 L-arabinose_isomerase 38.5 2E+02 0.0043 27.4 8.5 71 122-201 25-100 (484)
154 PF02887 PK_C: Pyruvate kinase 38.3 88 0.0019 23.0 5.1 44 146-201 4-48 (117)
155 PRK07315 fructose-bisphosphate 38.2 76 0.0016 27.9 5.4 74 127-202 11-87 (293)
156 cd01994 Alpha_ANH_like_IV This 38.0 2.2E+02 0.0048 23.2 10.9 34 43-80 1-34 (194)
157 PRK15411 rcsA colanic acid cap 38.0 1.9E+02 0.004 23.7 7.5 46 147-201 36-86 (207)
158 COG0301 ThiI Thiamine biosynth 37.9 2.7E+02 0.0059 25.6 9.0 36 42-81 176-211 (383)
159 PLN02496 probable phosphopanto 37.9 1.1E+02 0.0024 25.6 6.0 34 40-75 18-51 (209)
160 cd02065 B12-binding_like B12 b 37.9 1.1E+02 0.0024 22.3 5.7 63 129-199 23-87 (125)
161 PF07355 GRDB: Glycine/sarcosi 37.8 88 0.0019 28.3 5.7 68 133-203 47-122 (349)
162 PRK01269 tRNA s(4)U8 sulfurtra 37.7 3.6E+02 0.0078 25.5 11.5 38 40-81 176-213 (482)
163 PRK08576 hypothetical protein; 37.5 3.5E+02 0.0076 25.3 9.9 34 43-80 236-269 (438)
164 COG0415 PhrB Deoxyribodipyrimi 37.3 2.1E+02 0.0044 27.1 8.2 90 49-168 11-100 (461)
165 TIGR03572 WbuZ glycosyl amidat 37.2 2.1E+02 0.0045 23.8 7.8 51 147-200 155-205 (232)
166 COG4080 SpoU rRNA Methylase fa 37.1 1.6E+02 0.0035 22.9 6.2 88 147-239 16-106 (147)
167 PF01008 IF-2B: Initiation fac 37.1 69 0.0015 27.6 5.0 62 129-201 154-219 (282)
168 TIGR00646 MG010 DNA primase-re 37.0 76 0.0016 26.7 4.9 36 41-76 154-189 (218)
169 TIGR01521 FruBisAldo_II_B fruc 37.0 87 0.0019 28.3 5.6 72 127-201 9-82 (347)
170 TIGR00167 cbbA ketose-bisphosp 37.0 89 0.0019 27.4 5.6 75 125-201 9-86 (288)
171 TIGR01520 FruBisAldo_II_A fruc 36.9 1.2E+02 0.0025 27.6 6.4 76 127-202 20-109 (357)
172 PRK08883 ribulose-phosphate 3- 36.9 2.1E+02 0.0046 23.9 7.7 37 129-167 161-197 (220)
173 PRK13054 lipid kinase; Reviewe 36.6 1.8E+02 0.004 25.2 7.7 68 128-204 26-96 (300)
174 KOG0780 Signal recognition par 36.3 2E+02 0.0044 26.7 7.7 41 133-174 156-199 (483)
175 cd02070 corrinoid_protein_B12- 36.2 1.2E+02 0.0026 24.8 6.0 44 129-174 106-149 (201)
176 smart00851 MGS MGS-like domain 35.6 1.1E+02 0.0023 21.4 4.9 61 131-196 28-89 (90)
177 PRK05772 translation initiatio 35.1 2.9E+02 0.0062 25.2 8.6 67 129-202 223-290 (363)
178 cd04731 HisF The cyclase subun 35.1 2.7E+02 0.0058 23.3 8.2 51 147-200 151-201 (243)
179 PRK11889 flhF flagellar biosyn 34.9 3.7E+02 0.008 25.2 9.3 19 157-175 319-337 (436)
180 cd07044 CofD_YvcK Family of Co 34.7 86 0.0019 27.9 5.1 54 145-202 163-216 (309)
181 TIGR01826 CofD_related conserv 34.6 1E+02 0.0023 27.4 5.7 53 146-202 162-214 (310)
182 cd00453 FTBP_aldolase_II Fruct 34.3 77 0.0017 28.5 4.8 71 130-203 9-96 (340)
183 PRK01033 imidazole glycerol ph 34.2 2.7E+02 0.0058 23.8 8.1 51 146-199 153-203 (258)
184 PF00072 Response_reg: Respons 34.1 1.6E+02 0.0035 20.4 8.2 48 147-201 32-80 (112)
185 COG1570 XseA Exonuclease VII, 33.8 1.5E+02 0.0032 27.8 6.6 72 125-201 156-234 (440)
186 PRK02929 L-arabinose isomerase 33.4 2.1E+02 0.0046 27.3 7.8 45 147-200 57-105 (499)
187 COG0603 Predicted PP-loop supe 33.1 2E+02 0.0044 24.3 6.8 37 41-81 2-38 (222)
188 PLN02958 diacylglycerol kinase 33.1 4.3E+02 0.0093 25.0 12.1 69 128-205 138-212 (481)
189 PRK08610 fructose-bisphosphate 33.0 1.1E+02 0.0023 27.0 5.4 73 127-201 11-86 (286)
190 PRK09590 celB cellobiose phosp 32.9 1E+02 0.0022 22.6 4.5 37 42-78 2-38 (104)
191 PRK06027 purU formyltetrahydro 32.6 3.4E+02 0.0074 23.7 10.4 84 40-167 88-174 (286)
192 PRK11070 ssDNA exonuclease Rec 32.5 4.8E+02 0.01 25.4 10.8 16 152-167 145-160 (575)
193 PRK13057 putative lipid kinase 32.4 1.3E+02 0.0028 26.0 5.9 67 127-204 20-86 (287)
194 TIGR00524 eIF-2B_rel eIF-2B al 31.7 1E+02 0.0022 27.3 5.1 69 126-201 171-240 (303)
195 PF02142 MGS: MGS-like domain 31.5 35 0.00076 24.2 1.9 65 128-196 25-94 (95)
196 COG0816 Predicted endonuclease 31.5 75 0.0016 24.8 3.8 53 146-201 41-97 (141)
197 PF07279 DUF1442: Protein of u 31.5 3.1E+02 0.0068 23.1 7.6 29 41-72 42-72 (218)
198 PF13362 Toprim_3: Toprim doma 31.4 1.3E+02 0.0027 21.2 4.8 59 12-76 18-78 (96)
199 PRK08417 dihydroorotase; Provi 31.4 94 0.002 28.3 5.1 29 52-80 178-206 (386)
200 TIGR00147 lipid kinase, YegS/R 31.4 2.8E+02 0.006 23.9 7.9 67 127-202 26-93 (293)
201 PRK10550 tRNA-dihydrouridine s 31.3 3.7E+02 0.0081 23.8 9.1 61 133-199 133-201 (312)
202 PRK07084 fructose-bisphosphate 31.3 1E+02 0.0022 27.6 5.0 74 126-201 16-94 (321)
203 PRK09261 phospho-2-dehydro-3-d 31.3 4E+02 0.0087 24.2 11.7 126 41-197 51-185 (349)
204 PF06925 MGDG_synth: Monogalac 30.5 2.7E+02 0.0058 21.8 7.9 28 53-80 3-30 (169)
205 TIGR00583 mre11 DNA repair pro 29.8 92 0.002 28.8 4.7 22 146-167 30-51 (405)
206 cd01029 TOPRIM_primases TOPRIM 29.5 1.5E+02 0.0033 19.7 4.8 34 41-74 43-76 (79)
207 COG2099 CobK Precorrin-6x redu 29.4 1.5E+02 0.0033 25.5 5.6 68 139-213 47-114 (257)
208 TIGR00273 iron-sulfur cluster- 29.3 2.2E+02 0.0048 26.5 7.2 92 109-201 40-140 (432)
209 COG3622 Hfi Hydroxypyruvate is 29.2 2.7E+02 0.0058 24.0 6.9 81 37-143 65-147 (260)
210 PRK11914 diacylglycerol kinase 29.1 1.5E+02 0.0033 25.9 5.8 66 129-204 35-100 (306)
211 TIGR00735 hisF imidazoleglycer 29.0 3.3E+02 0.0072 23.1 7.8 51 147-200 157-207 (254)
212 PF03853 YjeF_N: YjeF-related 28.9 2.9E+02 0.0064 21.8 9.6 41 40-81 24-64 (169)
213 PRK00211 sulfur relay protein 28.3 1.6E+02 0.0035 22.0 5.1 38 41-79 1-42 (119)
214 cd04732 HisA HisA. Phosphorib 28.2 3.4E+02 0.0074 22.3 7.7 50 147-199 148-197 (234)
215 PRK13055 putative lipid kinase 28.1 3.3E+02 0.0072 24.2 7.9 68 126-202 26-95 (334)
216 cd02067 B12-binding B12 bindin 28.0 2.4E+02 0.0052 20.5 6.8 30 43-72 1-30 (119)
217 PF03358 FMN_red: NADPH-depend 27.9 2.2E+02 0.0047 21.6 6.0 39 146-193 60-98 (152)
218 PRK10415 tRNA-dihydrouridine s 27.5 4.4E+02 0.0095 23.4 8.9 62 133-200 133-202 (321)
219 cd07187 YvcK_like family of mo 27.3 1.5E+02 0.0033 26.3 5.5 53 145-201 164-216 (308)
220 PF03808 Glyco_tran_WecB: Glyc 27.2 2.3E+02 0.0051 22.4 6.2 45 145-198 88-132 (172)
221 COG0794 GutQ Predicted sugar p 27.2 2E+02 0.0043 23.9 5.7 65 12-83 63-127 (202)
222 PRK05835 fructose-bisphosphate 27.2 1.6E+02 0.0034 26.3 5.4 73 127-201 10-83 (307)
223 PRK07709 fructose-bisphosphate 27.1 1.7E+02 0.0036 25.7 5.6 72 127-200 11-85 (285)
224 cd00019 AP2Ec AP endonuclease 27.0 2.7E+02 0.0059 23.7 7.0 79 54-158 83-166 (279)
225 PRK06371 translation initiatio 26.9 3.3E+02 0.0072 24.5 7.5 67 127-200 190-257 (329)
226 COG1058 CinA Predicted nucleot 26.8 2.5E+02 0.0055 24.2 6.6 66 125-198 26-93 (255)
227 PLN02331 phosphoribosylglycina 26.7 3.5E+02 0.0076 22.4 7.3 42 148-201 68-109 (207)
228 PF10087 DUF2325: Uncharacteri 26.3 2.1E+02 0.0045 20.3 5.2 65 129-202 19-85 (97)
229 cd00951 KDGDH 5-dehydro-4-deox 26.2 2.9E+02 0.0064 23.9 7.1 65 133-200 69-133 (289)
230 PRK02261 methylaspartate mutas 26.2 3E+02 0.0065 21.1 9.0 36 41-76 3-38 (137)
231 COG0042 tRNA-dihydrouridine sy 26.2 3E+02 0.0064 24.6 7.2 35 133-167 136-174 (323)
232 TIGR00034 aroFGH phospho-2-deh 26.1 5E+02 0.011 23.5 9.7 130 41-199 46-182 (344)
233 COG1162 Predicted GTPases [Gen 26.1 4.7E+02 0.01 23.2 9.0 89 46-170 87-176 (301)
234 cd01998 tRNA_Me_trans tRNA met 26.1 4.8E+02 0.01 23.4 10.3 33 43-79 1-33 (349)
235 PF01207 Dus: Dihydrouridine s 26.0 3E+02 0.0066 24.2 7.2 59 133-197 122-188 (309)
236 cd01297 D-aminoacylase D-amino 26.0 2.9E+02 0.0063 25.3 7.3 29 53-81 225-253 (415)
237 cd01996 Alpha_ANH_like_III Thi 25.9 3E+02 0.0065 20.9 10.1 34 43-79 3-36 (154)
238 TIGR00853 pts-lac PTS system, 25.9 1.8E+02 0.0039 20.8 4.8 37 41-77 3-39 (95)
239 PRK00861 putative lipid kinase 25.8 2.6E+02 0.0055 24.3 6.7 62 133-204 32-93 (300)
240 PF01261 AP_endonuc_2: Xylose 25.7 2.8E+02 0.006 21.9 6.5 82 54-160 69-157 (213)
241 cd01976 Nitrogenase_MoFe_alpha 25.7 5.3E+02 0.011 23.8 9.0 30 138-168 350-379 (421)
242 cd02071 MM_CoA_mut_B12_BD meth 25.6 1.5E+02 0.0033 22.0 4.6 41 129-171 23-63 (122)
243 COG2379 GckA Putative glycerat 25.6 4.2E+02 0.0092 24.5 7.9 56 144-202 257-317 (422)
244 smart00732 YqgFc Likely ribonu 25.5 1.5E+02 0.0032 20.6 4.3 54 146-201 39-93 (99)
245 cd02803 OYE_like_FMN_family Ol 25.3 4.6E+02 0.01 22.9 9.3 53 147-199 230-288 (327)
246 PRK09196 fructose-1,6-bisphosp 25.3 1.6E+02 0.0035 26.6 5.3 72 128-201 12-84 (347)
247 PF04459 DUF512: Protein of un 25.2 4E+02 0.0086 22.1 7.9 52 147-201 149-202 (204)
248 PRK06372 translation initiatio 25.0 2.7E+02 0.0058 24.0 6.4 71 125-204 126-197 (253)
249 PRK07178 pyruvate carboxylase 24.9 1.2E+02 0.0027 28.4 4.8 35 41-80 2-36 (472)
250 PRK07627 dihydroorotase; Provi 24.8 1.6E+02 0.0034 27.3 5.3 29 52-80 209-237 (425)
251 PF01116 F_bP_aldolase: Fructo 24.8 49 0.0011 29.1 1.9 72 126-200 9-81 (287)
252 COG0044 PyrC Dihydroorotase an 24.8 1.6E+02 0.0034 27.5 5.3 29 51-79 205-233 (430)
253 TIGR02088 LEU3_arch isopropylm 24.7 2.9E+02 0.0063 24.7 6.8 28 50-77 139-166 (322)
254 TIGR01769 GGGP geranylgeranylg 24.5 1.5E+02 0.0032 24.7 4.6 51 148-203 14-64 (205)
255 cd00408 DHDPS-like Dihydrodipi 24.3 4.5E+02 0.0097 22.4 7.9 53 147-202 81-133 (281)
256 cd01979 Pchlide_reductase_N Pc 24.1 4.6E+02 0.01 23.9 8.3 28 137-165 325-352 (396)
257 PRK12822 phospho-2-dehydro-3-d 23.8 5.6E+02 0.012 23.3 9.8 28 40-67 50-79 (356)
258 PF00834 Ribul_P_3_epim: Ribul 23.8 98 0.0021 25.6 3.4 40 125-166 156-195 (201)
259 cd02801 DUS_like_FMN Dihydrour 23.7 4.1E+02 0.0089 21.7 7.5 64 134-199 124-190 (231)
260 PRK05720 mtnA methylthioribose 23.5 2.1E+02 0.0046 25.8 5.7 69 126-201 199-268 (344)
261 smart00493 TOPRIM topoisomeras 23.4 1.3E+02 0.0029 19.8 3.5 26 42-67 48-73 (76)
262 cd06278 PBP1_LacI_like_2 Ligan 23.3 4.1E+02 0.009 21.6 8.4 36 130-165 26-61 (266)
263 cd00578 L-fuc_L-ara-isomerases 23.2 5.6E+02 0.012 23.8 8.8 48 146-202 51-98 (452)
264 TIGR01917 gly_red_sel_B glycin 23.1 2.2E+02 0.0048 26.5 5.8 67 133-202 43-117 (431)
265 PRK08334 translation initiatio 23.0 2.2E+02 0.0049 25.8 5.7 66 128-200 214-280 (356)
266 PF02878 PGM_PMM_I: Phosphoglu 22.9 1.8E+02 0.0039 22.0 4.6 40 41-80 40-79 (137)
267 PRK10481 hypothetical protein; 22.9 4.1E+02 0.0088 22.4 7.0 56 133-198 153-212 (224)
268 TIGR03156 GTP_HflX GTP-binding 22.6 5.7E+02 0.012 23.0 8.7 24 143-166 51-74 (351)
269 PF14639 YqgF: Holliday-juncti 22.6 73 0.0016 25.1 2.3 22 146-167 51-72 (150)
270 COG4122 Predicted O-methyltran 22.5 3.1E+02 0.0066 23.1 6.1 60 132-200 107-166 (219)
271 TIGR00127 nadp_idh_euk isocitr 22.5 1.9E+02 0.0042 26.8 5.3 27 52-78 186-212 (409)
272 PRK00771 signal recognition pa 22.4 6.5E+02 0.014 23.6 9.9 31 46-77 101-131 (437)
273 PRK10653 D-ribose transporter 22.3 4E+02 0.0087 22.5 7.2 89 117-214 40-129 (295)
274 cd06533 Glyco_transf_WecG_TagA 22.2 1.7E+02 0.0037 23.3 4.5 44 146-198 87-130 (171)
275 TIGR03573 WbuX N-acetyl sugar 22.2 5.7E+02 0.012 22.9 9.8 34 43-79 61-94 (343)
276 TIGR00512 salvage_mtnA S-methy 22.2 2.3E+02 0.005 25.5 5.6 66 128-200 201-267 (331)
277 cd00950 DHDPS Dihydrodipicolin 22.2 2.7E+02 0.006 23.9 6.1 52 147-201 84-135 (284)
278 COG0615 TagD Cytidylyltransfer 22.1 2.3E+02 0.005 22.1 4.9 36 133-169 62-97 (140)
279 cd01424 MGS_CPS_II Methylglyox 22.0 3.1E+02 0.0067 19.7 6.3 58 132-196 42-99 (110)
280 PRK01565 thiamine biosynthesis 21.9 6.2E+02 0.013 23.2 12.0 36 40-79 175-210 (394)
281 PF01520 Amidase_3: N-acetylmu 21.9 3.7E+02 0.0081 20.9 6.5 38 125-164 33-73 (175)
282 TIGR01279 DPOR_bchN light-inde 21.8 6.3E+02 0.014 23.2 9.3 29 138-167 324-352 (407)
283 PRK06849 hypothetical protein; 21.8 3.3E+02 0.0071 24.6 6.8 34 40-77 3-36 (389)
284 TIGR01918 various_sel_PB selen 21.7 2.4E+02 0.0051 26.3 5.7 67 133-202 43-117 (431)
285 TIGR00347 bioD dethiobiotin sy 21.7 1.4E+02 0.0031 23.1 3.9 43 157-203 98-140 (166)
286 KOG0625 Phosphoglucomutase [Ca 21.6 6.8E+02 0.015 23.5 8.9 102 119-229 37-148 (558)
287 PRK04148 hypothetical protein; 21.2 3.9E+02 0.0084 20.6 7.3 40 133-172 77-116 (134)
288 PRK08335 translation initiatio 21.2 2.7E+02 0.0058 24.3 5.7 66 126-200 153-219 (275)
289 cd00958 DhnA Class I fructose- 21.2 4.8E+02 0.01 21.6 8.6 66 123-199 112-186 (235)
290 TIGR03249 KdgD 5-dehydro-4-deo 21.2 3.9E+02 0.0084 23.3 6.9 64 133-199 74-137 (296)
291 COG1927 Mtd Coenzyme F420-depe 21.2 3.1E+02 0.0067 23.1 5.7 48 147-201 49-96 (277)
292 cd06309 PBP1_YtfQ_like Peripla 21.1 4.8E+02 0.01 21.6 7.4 67 126-201 22-89 (273)
293 PRK08535 translation initiatio 21.1 1.9E+02 0.0041 25.6 4.9 65 127-200 165-230 (310)
294 PF00764 Arginosuc_synth: Argi 21.0 6.3E+02 0.014 23.3 8.3 26 146-171 93-118 (388)
295 cd03770 SR_TndX_transposase Se 20.9 1.9E+02 0.0042 22.0 4.4 52 144-200 54-107 (140)
296 TIGR00511 ribulose_e2b2 ribose 20.8 2.2E+02 0.0047 25.2 5.2 66 126-200 159-225 (301)
297 PRK10799 metal-binding protein 20.6 98 0.0021 26.4 2.9 31 40-77 34-64 (247)
298 TIGR01284 alt_nitrog_alph nitr 20.5 7.1E+02 0.015 23.3 10.1 33 40-76 324-356 (457)
299 COG4635 HemG Flavodoxin [Energ 20.4 1.4E+02 0.003 24.0 3.4 65 124-199 20-88 (175)
300 PRK11106 queuosine biosynthesi 20.3 5.3E+02 0.011 21.8 7.7 36 42-81 2-37 (231)
301 COG3640 CooC CO dehydrogenase 20.3 1.8E+02 0.0039 25.0 4.3 36 40-75 155-191 (255)
302 KOG0781 Signal recognition par 20.3 7.8E+02 0.017 23.7 10.1 124 41-200 379-505 (587)
303 PRK07369 dihydroorotase; Provi 20.2 1.9E+02 0.0042 26.6 5.0 32 50-81 208-239 (418)
304 PRK03170 dihydrodipicolinate s 20.2 4.8E+02 0.01 22.5 7.3 53 147-202 85-137 (292)
305 cd02696 MurNAc-LAA N-acetylmur 20.2 4.2E+02 0.0092 20.6 6.4 43 124-166 33-76 (172)
306 PF01791 DeoC: DeoC/LacD famil 20.1 3.9E+02 0.0086 22.2 6.5 69 122-194 114-191 (236)
307 PF14582 Metallophos_3: Metall 20.0 2.3E+02 0.0049 24.3 4.8 19 186-204 83-101 (255)
No 1
>PRK11175 universal stress protein UspE; Provisional
Probab=99.93 E-value=4.8e-25 Score=194.19 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=135.3
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHH
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (259)
|+++|||||+|+|+.+..|+++|+.+|+..+++++++|+.+......... . .....+...+...+..
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~ 67 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTL--L-----------SPDEREAMRQGVISQR 67 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcc--c-----------chhHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999986532211100 0 0011112222222334
Q ss_pred HHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
++++++..+.+...+++++..+.+++++.++|++.+++.++||||+|+++++++.+. ++||++++|+++++||||+|
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~---~~gs~~~~l~~~~~~pvlvv 144 (305)
T PRK11175 68 TAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV---IFTPTDWHLLRKCPCPVLMV 144 (305)
T ss_pred HHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh---ccChhHHHHHhcCCCCEEEe
Confidence 455666666666678999998887667999999999999999999999999999999 99999999999999999999
Q ss_pred eCCCCCCCCCCeeeecCCCCCCcchhhhccc
Q 024982 199 RYPDDKDDGEPLVKVKEPEKDDEDDHVDRKL 229 (259)
Q Consensus 199 ~~~~~~~~~~~l~av~~~~~~~~~~~~~~~~ 229 (259)
|...+....++++++|.+.+...++.++.+.
T Consensus 145 ~~~~~~~~~~Ilva~D~s~~~~~~~~~~~~a 175 (305)
T PRK11175 145 KDQDWPEGGKILVAVNVASEEPYHDALNEKL 175 (305)
T ss_pred cccccCCCCeEEEEeCCCCCccchhHHHHHH
Confidence 9876667788999999887765554444433
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.92 E-value=8.5e-24 Score=166.21 Aligned_cols=140 Identities=23% Similarity=0.263 Sum_probs=105.6
Q ss_pred CCCeEEEeecCCh--hHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSD--ESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 40 ~~~rILVavD~s~--~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
+|+|||||+|+|+ .+..|+++|..+|+. +++++++||+++..... .... . .. . +...+...+.
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~--~~~~---~-~~----~----~~~~~~~~~~ 65 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLS--LHRF---A-AD----V----RRFEEHLQHE 65 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCccccc--cccc---c-cc----h----hhHHHHHHHH
Confidence 3799999999994 899999999999987 56999999997643211 0000 0 00 0 1122223333
Q ss_pred HHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEE
Q 024982 118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlv 197 (259)
.++.++++.+.+...+++++.++..|+ +.++|++++++.++||||||++|++ +.+. ++||++++|+++++||||+
T Consensus 66 ~~~~l~~~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~---llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 66 AEERLQTMVSHFTIDPSRIKQHVRFGS-VRDEVNELAEELGADVVVIGSRNPS-ISTH---LLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHHHHHHHHHHhCCCCcceEEEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCCC-ccce---ecCccHHHHHHcCCCCEEE
Confidence 334445555555545788898888886 9999999999999999999999986 7888 9999999999999999999
Q ss_pred Ee
Q 024982 198 VR 199 (259)
Q Consensus 198 V~ 199 (259)
||
T Consensus 141 V~ 142 (142)
T PRK15456 141 VR 142 (142)
T ss_pred eC
Confidence 96
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.92 E-value=7e-24 Score=166.65 Aligned_cols=142 Identities=19% Similarity=0.269 Sum_probs=105.2
Q ss_pred CCCeEEEeecCChh--HHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDE--SAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 40 ~~~rILVavD~s~~--s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
++++||+|+|+|+. +..|+++|..+|+..+++++++||++....... .. ... .. .....+.+++ .
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~-~~-~~~--~~-----~~~~~~~~~~----~ 67 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYAS-LG-LAY--SA-----ELPAMDDLKA----E 67 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccc-cc-ccc--cc-----cchHHHHHHH----H
Confidence 36999999999998 579999999999999999999999976432110 00 000 00 0000111112 2
Q ss_pred HHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEE
Q 024982 118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlv 197 (259)
..+.++++.+.+...+++++.++..|+ +.+.|++++++.++||||||++ ++++.+. ++||++++|+++++||||+
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~---llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 68 AKSQLEEIIKKFKLPTDRVHVHVEEGS-PKDRILELAKKIPADMIIIASH-RPDITTY---LLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEEeCC-CCCchhe---eecchHHHHHHhCCCCEEE
Confidence 223344455555556778888888886 9999999999999999999998 4578888 9999999999999999999
Q ss_pred Ee
Q 024982 198 VR 199 (259)
Q Consensus 198 V~ 199 (259)
||
T Consensus 143 Vr 144 (144)
T PRK15005 143 VR 144 (144)
T ss_pred eC
Confidence 96
No 4
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.92 E-value=1.5e-23 Score=165.20 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=110.8
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
+||||+|+|+.+..|++||+++|+..+++|+++||.++......... . . ...+...+...+..++.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-----~-------~-~~~~~~~~~~~~~~~~~l 67 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-----K-------L-EVASAYKQEEDKEAKELL 67 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-----c-------h-HHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999876432111100 0 0 001112222233344445
Q ss_pred HHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCC-cHHHHHhhcCC--ccEEEEe
Q 024982 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLG-SVSDYCVHHCV--CPVVVVR 199 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~g-s~~~~ll~~s~--~PVlvV~ 199 (259)
++..+.+...+++++..+..|+++.++|++++++.++||||||+++++++.++ ++| |++.+|+++++ |||++|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~---~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 68 LPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMK---FKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeec---ccCCchhHHHHhcCCCCceEEEEe
Confidence 55555666668999999999877999999999999999999999999999998 887 69999999999 9999998
Q ss_pred C
Q 024982 200 Y 200 (259)
Q Consensus 200 ~ 200 (259)
.
T Consensus 145 ~ 145 (146)
T cd01989 145 K 145 (146)
T ss_pred C
Confidence 5
No 5
>PRK11175 universal stress protein UspE; Provisional
Probab=99.90 E-value=2.6e-23 Score=183.13 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChhH-------HHHHHHHHHHhCCC-CCEEEEE
Q 024982 4 QQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDES-------AFAVRWAVHHYLRP-GDAVILV 75 (259)
Q Consensus 4 ~~~~~~~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~s-------~~al~~A~~lA~~~-~a~l~ll 75 (259)
+++..++++++|||++++....+ .+++||+|+|+++.+ ..++++|..+|+.. +++++++
T Consensus 128 s~~~~l~~~~~~pvlvv~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll 194 (305)
T PRK11175 128 PTDWHLLRKCPCPVLMVKDQDWP-------------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLV 194 (305)
T ss_pred hhHHHHHhcCCCCEEEecccccC-------------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEE
Confidence 46678999999999999864322 468999999998753 67999999999998 9999999
Q ss_pred EEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhCCccE-EEEEEecCchHHHHHHHH
Q 024982 76 HVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPY-KIHIVKDHDMRERLCLEI 154 (259)
Q Consensus 76 hV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~v~~g~~~~~~Il~~a 154 (259)
|+++....... ...+. . . ..+..+..++ ...+.++++.+ ..++.. ..++..|. +.++|++++
T Consensus 195 ~v~~~~~~~~~--~~~~~--~-~----~~~~~~~~~~----~~~~~l~~~~~---~~~~~~~~~~v~~G~-~~~~I~~~a 257 (305)
T PRK11175 195 NAYPVTPINIA--IELPE--F-D----PSVYNDAIRG----QHLLAMKALRQ---KFGIDEEQTHVEEGL-PEEVIPDLA 257 (305)
T ss_pred EEecCcchhcc--ccccc--c-c----hhhHHHHHHH----HHHHHHHHHHH---HhCCChhheeeccCC-HHHHHHHHH
Confidence 99875422110 00000 0 0 0111111111 11122222222 224543 34445554 999999999
Q ss_pred HhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 155 ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 155 ~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
++.++||||||+++++++.++ ++||++++|+++++||||+||+.
T Consensus 258 ~~~~~DLIVmG~~~~~~~~~~---llGS~a~~v~~~~~~pVLvv~~~ 301 (305)
T PRK11175 258 EHLDAELVILGTVGRTGLSAA---FLGNTAEHVIDHLNCDLLAIKPD 301 (305)
T ss_pred HHhCCCEEEECCCccCCCcce---eecchHHHHHhcCCCCEEEEcCC
Confidence 999999999999999999999 99999999999999999999864
No 6
>PRK09982 universal stress protein UspD; Provisional
Probab=99.90 E-value=7.5e-23 Score=161.05 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=102.2
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+|+|||||+|+|+.|..|+++|..+|+..+++++++||.+......... .. .. .+. ..+...+...
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~-----~~-~~----~~~----~~~~~~~~~~ 67 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGI-----YF-PA----TED----ILQLLKNKSD 67 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhh-----hc-cc----hHH----HHHHHHHHHH
Confidence 5899999999999999999999999999999999999987642111000 00 00 111 1122222223
Q ss_pred HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.++++.+.+. ...++.++..|+ |.+.|++++++.++||||||++ ++++.++ + | ++++++++++||||+||
T Consensus 68 ~~l~~~~~~~~--~~~~~~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~---~-~-va~~V~~~s~~pVLvv~ 138 (142)
T PRK09982 68 NKLYKLTKNIQ--WPKTKLRIERGE-MPETLLEIMQKEQCDLLVCGHH-HSFINRL---M-P-AYRGMINKMSADLLIVP 138 (142)
T ss_pred HHHHHHHHhcC--CCcceEEEEecC-HHHHHHHHHHHcCCCEEEEeCC-hhHHHHH---H-H-HHHHHHhcCCCCEEEec
Confidence 33444444333 235677777876 9999999999999999999986 8888887 5 5 99999999999999999
Q ss_pred CC
Q 024982 200 YP 201 (259)
Q Consensus 200 ~~ 201 (259)
..
T Consensus 139 ~~ 140 (142)
T PRK09982 139 FI 140 (142)
T ss_pred CC
Confidence 65
No 7
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.89 E-value=2.1e-22 Score=158.53 Aligned_cols=139 Identities=21% Similarity=0.202 Sum_probs=96.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+++|||||+|+|+.+..|+++|..+|+..+++++++||.++......++. .. . .. ...+...+...
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~-----~~-~----~~----~~~~~~~~~~~ 67 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLI-----DV-N----LG----DMQKRISEETH 67 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhh-----hc-c----hH----HHHHHHHHHHH
Confidence 68999999999999999999999999999999999999533211100000 00 0 01 11112222222
Q ss_pred HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
++++++. ...++.+....++.+++.++|++++++.++||||||+++ +.+ +. +||++++|+++++||||+||
T Consensus 68 ~~l~~~~---~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~-~~----lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 68 HALTELS---TNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFW-SK----LMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred HHHHHHH---HhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHH-HH----HHHHHHHHHhhCCCCEEEec
Confidence 3333332 334676554454444599999999999999999999996 333 32 47999999999999999999
Q ss_pred CC
Q 024982 200 YP 201 (259)
Q Consensus 200 ~~ 201 (259)
.+
T Consensus 139 ~~ 140 (144)
T PRK15118 139 LR 140 (144)
T ss_pred CC
Confidence 64
No 8
>PRK10116 universal stress protein UspC; Provisional
Probab=99.89 E-value=6e-22 Score=155.37 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=103.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+|+||||++|+++.+..++++|..+|+..+++|+++|+.+...... .. .....+.+.+...+...
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~ 66 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN----QF-----------AAPMLEDLRSVMQEETQ 66 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch----hh-----------hHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999986642111 00 11111222233333333
Q ss_pred HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
++++++. ...++......++.+++.+.|++++++.++||||||+++++.+.++ + |++++++++++||||+||
T Consensus 67 ~~l~~~~---~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~---~--s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 67 SFLDKLI---QDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA---S--CSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHHHHH---HhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH---H--HHHHHHHhcCCCCEEEEe
Confidence 3333333 2346665544445556999999999999999999999999988886 3 899999999999999999
Q ss_pred CC
Q 024982 200 YP 201 (259)
Q Consensus 200 ~~ 201 (259)
.+
T Consensus 139 ~~ 140 (142)
T PRK10116 139 LT 140 (142)
T ss_pred CC
Confidence 65
No 9
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.89 E-value=7.3e-22 Score=152.12 Aligned_cols=140 Identities=27% Similarity=0.402 Sum_probs=100.5
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
|++|||||+|+++.+..+++||..+|+..+++++++||.+....... .................
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 64 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF----------------SAAEDEESEEEAEEEEQ 64 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH----------------HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc----------------ccccccccccccchhhh
Confidence 46999999999999999999999999999999999999988643110 00000000000000000
Q ss_pred HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
.............+......+.. +++.++|++++++.++|+||+|+++++.+.++ ++||++++|+++++|||++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~---~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 65 ARQAEAEEAEAEGGIVIEVVIES-GDVADAIIEFAEEHNADLIVMGSRGRSGLERL---LFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEE-SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTS---SSHHHHHHHHHHTSSEEEEEE
T ss_pred hhhHHHHHHhhhccceeEEEEEe-eccchhhhhccccccceeEEEeccCCCCccCC---CcCCHHHHHHHcCCCCEEEeC
Confidence 00000011222334444455454 55999999999999999999999999999999 999999999999999999997
No 10
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.86 E-value=6.1e-21 Score=147.15 Aligned_cols=132 Identities=18% Similarity=0.156 Sum_probs=105.3
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
|||||+|+++++..++++|..+|+..+++++++|+++....... . . .. .. .+..++.+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~-------~----~---~~----~~----~~~~~~~~ 58 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP-------S----Q---LE----VN----VQRARKLL 58 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc-------c----h---hH----HH----HHHHHHHH
Confidence 69999999999999999999999999999999999986432110 0 0 00 00 11122233
Q ss_pred HHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.+.+.+.+.|++++..+..++++.++|++.+++.++|+||||+++++.+.+. ++||++.+++++++|||+++|
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~---~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDR---LFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccce---ecCchHHHHHhcCCCCEEEeC
Confidence 44445555568888888877667999999999999999999999999999888 999999999999999999986
No 11
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.84 E-value=5.2e-20 Score=141.03 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=97.6
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
|||||+|+++.+..++++|..+|+..+++|+++||.+..... ..+...+.+++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~-----------------~~~~~~~~l~~---------- 53 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR-----------------LSEAERRRLAE---------- 53 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc-----------------CCHHHHHHHHH----------
Confidence 699999999999999999999999999999999998764210 01222222221
Q ss_pred HHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEe
Q 024982 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVR 199 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~ 199 (259)
+.+.+++.++ +..++.++++.++|.++++++++|+||+|+++++.+.++ ++||++++|++++ +|||+|++
T Consensus 54 --~~~~~~~~~~--~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~---~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 54 --ALRLAEELGA--EVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWREL---FRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred --HHHHHHHcCC--EEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH---hcccHHHHHHHhCCCCeEEEeC
Confidence 2222222244 455666777999999999999999999999999999999 9999999999999 99999985
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.79 E-value=5.5e-18 Score=129.02 Aligned_cols=130 Identities=33% Similarity=0.452 Sum_probs=104.0
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
+||||+|+++.+..++++|..+|+..+++++++|+.+....... ...+......++++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~----------------------~~~~~~~~~~~~~l 58 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA----------------------ELAELLEEEARALL 58 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch----------------------hHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999876432110 11111112222334
Q ss_pred HHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
+.+...+...++.++.++..|. +.++|.+++++.++|+||+|+++++.+.+. ++|+++++++++++|||+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~dlvvig~~~~~~~~~~---~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 59 EALREALAEAGVKVETVVLEGD-PAEAILEAAEELGADLIVMGSRGRSGLRRL---LLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHHhcCCCceEEEEecCC-CHHHHHHHHHHcCCCEEEEcCCCCCcccee---eeccHHHHHHhCCCCCEEeC
Confidence 4444444556889888888887 599999999999999999999999999888 99999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.76 E-value=7.4e-17 Score=126.90 Aligned_cols=149 Identities=27% Similarity=0.270 Sum_probs=112.3
Q ss_pred CCCCeEEEeec-CChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 39 LARRKIGVAVD-LSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 39 ~~~~rILVavD-~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
.++++||+++| +++.+..+++++..++...++.+.+++|.+................ ...........
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 71 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAP-----------IPLSEEELEEE 71 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccch-----------hhhhHHHHHHH
Confidence 46799999999 9999999999999999999999999999876532211111000000 01111112222
Q ss_pred HHHHHHHHhhhhhhCCcc-EEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 118 TATKAADLARPLKEAGFP-YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
..+..+.+.+.....++. +...+..|....+.|++++++.++|+||||++++++++++ ++||++++++++++|||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~---llGsvs~~v~~~~~~pVl 148 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRL---LLGSVAEKVLRHAPCPVL 148 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccce---eeehhHHHHHhcCCCCEE
Confidence 333344455555666777 5888888885589999999999999999999999999999 999999999999999999
Q ss_pred EEeCC
Q 024982 197 VVRYP 201 (259)
Q Consensus 197 vV~~~ 201 (259)
++|..
T Consensus 149 vv~~~ 153 (154)
T COG0589 149 VVRSE 153 (154)
T ss_pred EEccC
Confidence 99864
No 14
>PRK10490 sensor protein KdpD; Provisional
Probab=99.62 E-value=5.7e-15 Score=147.24 Aligned_cols=181 Identities=14% Similarity=0.110 Sum_probs=125.0
Q ss_pred CCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 37 TSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 37 ~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
.|...+|||||+++++.+..++++|.++|.+.+++++++||..+..... .....+.+.+.
T Consensus 246 ~~~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~-----------------~~~~~~~l~~~--- 305 (895)
T PRK10490 246 VWHTRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL-----------------PEKKRRAILSA--- 305 (895)
T ss_pred CCCcCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC-----------------CHHHHHHHHHH---
Confidence 3456799999999999999999999999999999999999986632100 22222233321
Q ss_pred HHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccE
Q 024982 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPV 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PV 195 (259)
+ ++++ .+..++..+.|+|++++|+++|++++++.||||.++++++ + +.||+++++++.++ ++|
T Consensus 306 -----~-~lA~-----~lGa~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~---~~~s~~~~l~r~~~~idi 369 (895)
T PRK10490 306 -----L-RLAQ-----ELGAETATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--W---RRESFADRLARLGPDLDL 369 (895)
T ss_pred -----H-HHHH-----HcCCEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--c---cCCCHHHHHHHhCCCCCE
Confidence 1 2444 3334577788999999999999999999999999998876 6 67899999999998 999
Q ss_pred EEEeCCCCCCCC-CCeeeecCCCCCCcchhhhccccceeeee---------------eehhccccceehhhhhhhhhhc
Q 024982 196 VVVRYPDDKDDG-EPLVKVKEPEKDDEDDHVDRKLKGFFFLF---------------FLNFVQDSSIFFFNWVLVCLLF 258 (259)
Q Consensus 196 lvV~~~~~~~~~-~~l~av~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 258 (259)
+||+....+... .....-..... .....+.+|.+++ +++..+.+.+||+.++++|+++
T Consensus 370 ~iv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~t~l~~~l~~~l~~~ni~mlyll~Vll~A~~~ 443 (895)
T PRK10490 370 VIVALDEPPARAIAKAPDSRPFKE-----KWRVQIQGCLVAIALCALITLIAMQWLPAFDAANLVMLYLLGVVVVALFY 443 (895)
T ss_pred EEEeCCcccccccccccccccccc-----cccccHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHh
Confidence 999855421111 00000000000 0000222333332 5667778889999999998864
No 15
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.57 E-value=2.1e-14 Score=136.46 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=134.7
Q ss_pred CCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 37 TSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 37 ~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
.|....+||||+++++.+...+++|.++|.+.+++++++||..+..... .+...+.+.+
T Consensus 244 ~~~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~-----------------~~~~~~~l~~---- 302 (890)
T COG2205 244 VWAARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL-----------------SEKEARRLHE---- 302 (890)
T ss_pred cccccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc-----------------cHHHHHHHHH----
Confidence 3556699999999999999999999999999999999999998764321 2233444444
Q ss_pred HHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccE
Q 024982 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPV 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PV 195 (259)
..++++. +..++.++.|++.+++|.++|+.+++..||+|.+.+++|++. |.|+..++++++++ +.|
T Consensus 303 -----~~~Lae~-----lGae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~---~~~~l~~~L~~~~~~idv 369 (890)
T COG2205 303 -----NLRLAEE-----LGAEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRL---FKGSLADRLAREAPGIDV 369 (890)
T ss_pred -----HHHHHHH-----hCCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHH---hcccHHHHHHhcCCCceE
Confidence 3335553 344888899999999999999999999999999999999999 99999999999988 999
Q ss_pred EEEeCCCCCCCCC--CeeeecCCCCCCcchhhhcc-------ccceeeeeeehhccccceehhhhhhhhhhc
Q 024982 196 VVVRYPDDKDDGE--PLVKVKEPEKDDEDDHVDRK-------LKGFFFLFFLNFVQDSSIFFFNWVLVCLLF 258 (259)
Q Consensus 196 lvV~~~~~~~~~~--~l~av~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (259)
++|+.+..+..+. ...+...+..-. .+-..-. ..+++.-++++....+.+||+++++++++.
T Consensus 370 ~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~ 440 (890)
T COG2205 370 HIVALDAPPDKRPNAVKWRPKIQGSWS-RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLT 440 (890)
T ss_pred EEeeCCCCccccccccchhhhccccch-HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh
Confidence 9999866542211 111111110000 0000000 011112226777888899999999998763
No 16
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.54 E-value=3e-13 Score=121.04 Aligned_cols=149 Identities=12% Similarity=0.038 Sum_probs=96.4
Q ss_pred CCCCCeEEEeecCChhHHHHHHHHHHHhCCC--CCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHH
Q 024982 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRP--GDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD 115 (259)
Q Consensus 38 ~~~~~rILVavD~s~~s~~al~~A~~lA~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (259)
|++++|||||+|+|+.++.|+++|+.+|+.. +++|+++||.+....... .....+.. ++..
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~----------------~~~~~~~~-eell 64 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE----------------GQDELAAA-EELL 64 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc----------------hhHHHHHH-HHHH
Confidence 5689999999999999999999999999984 699999999885421100 00000111 1111
Q ss_pred HHHHHHHHHHhhhhhhCCccEEEEEEec-------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh
Q 024982 116 TFTATKAADLARPLKEAGFPYKIHIVKD-------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV 188 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v~v~~~v~~g-------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll 188 (259)
+...++.++..+. +..|++++..+..+ ++++++|+++|+++++||||||..-..+-..- ++.+.-. =+
T Consensus 65 e~~~~~~~~~l~~-~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~---~~~~~~~-~~ 139 (357)
T PRK12652 65 ERVEVWATEDLGD-DASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAP---MLQPLER-EL 139 (357)
T ss_pred HHHHHHHHHhhhc-ccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCc---ccchHHH-HH
Confidence 1122222211111 33589999888773 45999999999999999999999865544444 5555444 44
Q ss_pred hcCCccEEEEeCCCCCCCCC
Q 024982 189 HHCVCPVVVVRYPDDKDDGE 208 (259)
Q Consensus 189 ~~s~~PVlvV~~~~~~~~~~ 208 (259)
.++.|.+=..|-+...+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~ 159 (357)
T PRK12652 140 ARAGITYEEAPVERPTRRGR 159 (357)
T ss_pred HhcCCceecCCccCccCccc
Confidence 55666665555444443333
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.41 E-value=1.5e-06 Score=61.98 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=72.4
Q ss_pred EEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 024982 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAA 123 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 123 (259)
||++++++..|..++.++.+++ ..+.+++.+|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999987 457788888873
Q ss_pred HHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCC-cHHHHHhhcCCccEEE
Q 024982 124 DLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLG-SVSDYCVHHCVCPVVV 197 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~g-s~~~~ll~~s~~PVlv 197 (259)
...+.+.+.+++.++|+|+.|+++....... +.| +++.++.+.++|||+.
T Consensus 35 ---------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~---~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 ---------------------AFVRILKRLAAEEGADVIILGHNADDVAGRR---LGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred ---------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhc---cCchhhhhhcccccCCceeC
Confidence 2566677788889999999999999888887 777 8999999999999973
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.80 E-value=0.0013 Score=65.72 Aligned_cols=177 Identities=12% Similarity=0.107 Sum_probs=96.6
Q ss_pred CCCCCCCCCCeeEecC-CCCCCCCCCCCCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccC
Q 024982 7 QPDSDHPHLPTIKIHN-PSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFG 85 (259)
Q Consensus 7 ~~~~~~~~~pv~~v~~-~~~~~~~~~~~~~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~ 85 (259)
++|.++++|+|-+.=. .... ..+........+|.+..=|.++.+.|+.||.++|+..+..++++|..+.+....
T Consensus 600 ~~VL~~ApCsVgIlVDRg~~~-----~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~ 674 (832)
T PLN03159 600 QNVLANAPCSVGILVDRGLSG-----ATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAP 674 (832)
T ss_pred HHHHccCCCCEEEEEeCCCCc-----cccccccccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEccccccc
Confidence 6789999999977642 2111 000111223469999999999999999999999999999999999986532211
Q ss_pred CC------CCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hCCccEEEEEEecC-chHHHHHHHHHhc
Q 024982 86 AD------WGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLK-EAGFPYKIHIVKDH-DMRERLCLEIERL 157 (259)
Q Consensus 86 ~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~v~~g~-~~~~~Il~~a~~~ 157 (259)
.. ........... ..+..+.++++ ..+++..+.. ...+.+.-+++.+. +....| +.. ..
T Consensus 675 ~~~~~~~~~~~~~~~~~~~----~~~~e~~~D~~-------~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l-~~~-~~ 741 (832)
T PLN03159 675 TASQPASSPSDPRIPTVET----DGKKERQLDEE-------YINEFRARNAGNESIVYTEKVVSNGEETVAAI-RSM-DS 741 (832)
T ss_pred ccccccccccccccccccc----cchhHHHHHHH-------HHHHHHHhcCCCCceEEEEEecCCHHHHHHHH-HHh-hc
Confidence 00 00000000000 01111222221 1222333322 23455555555432 222222 222 22
Q ss_pred CCcEEEEecCCCC------cccccCCC-cCCcHHHHHhhc---CCccEEEEeCC
Q 024982 158 SLSAVIMGSRGFG------AEKRGSDG-KLGSVSDYCVHH---CVCPVVVVRYP 201 (259)
Q Consensus 158 ~~dLIVlG~~~~~------~~~~~~~~-l~gs~~~~ll~~---s~~PVlvV~~~ 201 (259)
++||+|+|+++.. ++.++++- =+|.+.+-+.-. +...||||.+.
T Consensus 742 ~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~ 795 (832)
T PLN03159 742 AHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQY 795 (832)
T ss_pred cCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEee
Confidence 4999999986432 22222111 157777777764 46889999764
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.34 E-value=0.0056 Score=61.33 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=86.1
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHh--CCCCCEEEEEEEecCCcccCCCCCCCCccccccchh-hhH--HHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHY--LRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENA-SNI--EHQKQLEDDFD 115 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 115 (259)
-.|||+|+...++-...+..+-... ++....++++|.++.......-.. .+........ ..+ ...+++-..
T Consensus 458 elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~--~h~~~~~~~~~~~~~~~~~~~i~~a-- 533 (832)
T PLN03159 458 ELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLI--VHNTRKSGRPALNRTQAQSDHIINA-- 533 (832)
T ss_pred ceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCcccee--eeecccccccccccccccccHHHHH--
Confidence 3689999998888777776654432 234458999999875432211100 0000000000 000 000111111
Q ss_pred HHHHHHHHHHhhhhhhCCccEEEEEEec--CchHHHHHHHHHhcCCcEEEEecCCCCccccc---CCCcCCcHHHHHhhc
Q 024982 116 TFTATKAADLARPLKEAGFPYKIHIVKD--HDMRERLCLEIERLSLSAVIMGSRGFGAEKRG---SDGKLGSVSDYCVHH 190 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v~v~~~v~~g--~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~---~~~l~gs~~~~ll~~ 190 (259)
.+.+.+.. .++.++...... ++..+.|++.|++.++++||++.|++-...+. .+..++.+-++|+++
T Consensus 534 ------f~~~~~~~--~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ 605 (832)
T PLN03159 534 ------FENYEQHA--GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLAN 605 (832)
T ss_pred ------HHHHHhhc--CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHcc
Confidence 11121111 257777655554 48999999999999999999999975432221 011456778999999
Q ss_pred CCccEEEEeC
Q 024982 191 CVCPVVVVRY 200 (259)
Q Consensus 191 s~~PVlvV~~ 200 (259)
+||+|-|.=+
T Consensus 606 ApCsVgIlVD 615 (832)
T PLN03159 606 APCSVGILVD 615 (832)
T ss_pred CCCCEEEEEe
Confidence 9999988744
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.65 E-value=0.035 Score=45.27 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=63.3
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
||+|+++|+.+|..++..+..+++..+.++.++|+....... .....+.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~------------------~~~~~~~~------------ 50 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPE------------------SDEEAEFV------------ 50 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChh------------------HHHHHHHH------------
Confidence 589999999999999999998877777789999987553100 11111111
Q ss_pred HHHhhhhhhCCccEEEEEEec--------CchH--------HHHHHHHHhcCCcEEEEecCCCCccc
Q 024982 123 ADLARPLKEAGFPYKIHIVKD--------HDMR--------ERLCLEIERLSLSAVIMGSRGFGAEK 173 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g--------~~~~--------~~Il~~a~~~~~dLIVlG~~~~~~~~ 173 (259)
+.++ +..|+++....... .+.. ..+.+.+++++++.|+.|.+......
T Consensus 51 ~~~~---~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e 114 (189)
T TIGR02432 51 QQFC---KKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAE 114 (189)
T ss_pred HHHH---HHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHH
Confidence 1122 22356554433321 1122 57788899999999999998655443
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.08 E-value=0.1 Score=42.39 Aligned_cols=99 Identities=18% Similarity=0.085 Sum_probs=59.2
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
||+|++.|..+|..++.....+....+.++.++||...-... .....+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~------------------s~~~~~~------------- 49 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREE------------------SDEEAEF------------- 49 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCC------------------HHHHHHH-------------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc------------------cchhHHH-------------
Confidence 699999999999999999999999889999999998653210 1111112
Q ss_pred HHHhhhhhhCCccEEEEEEe-----cCc--------hHHHHHHHHHhcCCcEEEEecCCCCcccc
Q 024982 123 ADLARPLKEAGFPYKIHIVK-----DHD--------MRERLCLEIERLSLSAVIMGSRGFGAEKR 174 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~-----g~~--------~~~~Il~~a~~~~~dLIVlG~~~~~~~~~ 174 (259)
+.+.++..++++...... +.+ =.+.+.+.|.+.+++.|++|.+.....+.
T Consensus 50 --v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET 112 (182)
T PF01171_consen 50 --VEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAET 112 (182)
T ss_dssp --HHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHH
T ss_pred --HHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHH
Confidence 222333346666555444 111 12466678899999999999986544443
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=95.41 E-value=0.24 Score=40.04 Aligned_cols=38 Identities=29% Similarity=0.189 Sum_probs=33.2
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
||+|+++|..+|..++..+.......+.++.++|+...
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 58999999999999999998887766788999999755
No 23
>PRK12342 hypothetical protein; Provisional
Probab=94.91 E-value=0.31 Score=41.99 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=63.5
Q ss_pred ecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024982 48 VDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLAR 127 (259)
Q Consensus 48 vD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 127 (259)
.-.++....|++.|+++. +.|++++++++-++.. +..+.+++ ...
T Consensus 31 ~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a----------------------~~~~l~r~------------ala 75 (254)
T PRK12342 31 AKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL----------------------QNSKVRKD------------VLS 75 (254)
T ss_pred ccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH----------------------hHHHHHHH------------HHH
Confidence 345788999999999998 6899999999866531 11111111 111
Q ss_pred hhhhCCccEEEEE----EecCch---HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 128 PLKEAGFPYKIHI----VKDHDM---RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 128 ~~~~~~v~v~~~v----~~g~~~---~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
. |.+=-+++ ..|.|+ +..|...+++.++|||+.|...-.. -.|-+.-.+......|.+
T Consensus 76 m----GaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~-------~tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 76 R----GPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDL-------YAQQVGLLLGELLQLPVI 140 (254)
T ss_pred c----CCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccC-------CCCCHHHHHHHHhCCCcE
Confidence 1 44422222 234455 6888888898899999999764332 234455555555555543
No 24
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=94.10 E-value=1.1 Score=38.76 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=62.9
Q ss_pred cCChhHHHHHHHHHHHhCCCC-CEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPG-DAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLAR 127 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 127 (259)
-.+++...|++.|+++..+.+ ++++++++-+... +..+.+++. + .
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a----------------------~~~~~lr~a-----------L-A 78 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL----------------------TNAKGRKDV-----------L-S 78 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch----------------------hhHHHHHHH-----------H-H
Confidence 357889999999999998765 7999999876531 111222221 1 1
Q ss_pred hhhhCCccEEEEEEe-----cCc---hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 128 PLKEAGFPYKIHIVK-----DHD---MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~-----g~~---~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
. |.+ +...++ |.| .+..|...+++.++|||+.|...-.+ -.|-+.-.+......|.+
T Consensus 79 m----GaD-~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~-------~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 79 R----GPD-ELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDL-------YAQQVGLLVGEILNIPAI 143 (256)
T ss_pred c----CCC-EEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccC-------CCCcHHHHHHHHhCCCce
Confidence 1 444 222222 212 46778888888899999999864433 224455556555555543
No 25
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=93.50 E-value=0.9 Score=36.46 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=31.9
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCC--CCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRP--GDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~--~a~l~llhV~~~ 80 (259)
||+|++.|...|..++..+..+.... +-+++++|+...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999998888876654 668999998765
No 26
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=93.02 E-value=1.8 Score=34.25 Aligned_cols=106 Identities=22% Similarity=0.192 Sum_probs=63.5
Q ss_pred eEEEeecC-----ChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDL-----SDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 43 rILVavD~-----s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
+|||-++. ++.+..++..|.+++...|.+++++.+-+... ..+.+++
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~-----------------------~~~~l~~----- 52 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEE-----------------------AAEALRK----- 52 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC-----------------------HHHHHHH-----
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchh-----------------------hHHHHhh-----
Confidence 35565553 37899999999999999999999998763221 1112211
Q ss_pred HHHHHHHHhhhhhhCCccEEEEEEec-------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc
Q 024982 118 TATKAADLARPLKEAGFPYKIHIVKD-------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH 190 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~v~~~v~~g-------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~ 190 (259)
.+...|.+--+.+... ....+.|.+.+++.++|+|++|....+. .++-++..+
T Consensus 53 ----------~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~----------~la~~lA~~ 112 (164)
T PF01012_consen 53 ----------ALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGR----------DLAPRLAAR 112 (164)
T ss_dssp ----------HHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHH----------HHHHHHHHH
T ss_pred ----------hhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCC----------cHHHHHHHH
Confidence 1222365533333221 1256688899999999999999863321 245555555
Q ss_pred CCccEE
Q 024982 191 CVCPVV 196 (259)
Q Consensus 191 s~~PVl 196 (259)
..+|++
T Consensus 113 L~~~~v 118 (164)
T PF01012_consen 113 LGAPLV 118 (164)
T ss_dssp HT-EEE
T ss_pred hCCCcc
Confidence 555543
No 27
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=92.37 E-value=1.1 Score=36.68 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=29.9
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
++||++++.||-.+..+.+....|.+..|.++.++
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv 35 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLV 35 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 47999999999999999999999977567776665
No 28
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.69 E-value=3 Score=38.99 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=65.1
Q ss_pred EEEee--cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 44 IGVAV--DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 44 ILVav--D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
||+=. |..-....||..|++.|...+.+|..+++.++..... ......++.+.
T Consensus 25 vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~-------------------------~~~r~~Fl~es 79 (454)
T TIGR00591 25 VVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAA-------------------------TRRHYFFMLGG 79 (454)
T ss_pred EEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccc-------------------------cHHHHHHHHHH
Confidence 44443 5666778899999887766677899999987643210 01122333334
Q ss_pred HHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
++.+.+.+.+.|+.+ .+..|+ +.+.|.+.+++.+++.|+.-..
T Consensus 80 L~~L~~~L~~~g~~L--~v~~g~-~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 80 LDEVANECERLIIPF--HLLDGP-PKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHHHHHcCCce--EEeecC-hHHHHHHHHHHcCCCEEEEecc
Confidence 555666666556554 455665 8999999999999999999775
No 29
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=90.26 E-value=2.3 Score=34.73 Aligned_cols=34 Identities=21% Similarity=0.048 Sum_probs=28.4
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
++||++++.|+..+..+.++...|.+ .|.++.++
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv 34 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVL 34 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 48999999999999999988888865 57777664
No 30
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.91 E-value=2.2 Score=37.23 Aligned_cols=39 Identities=28% Similarity=0.073 Sum_probs=33.9
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
..+|+|++.|..+|..++.....+... .++.++||...-
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~ 59 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGL 59 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCC
Confidence 379999999999999999998887765 899999997664
No 31
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=89.48 E-value=7.3 Score=33.68 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=67.2
Q ss_pred eecCChhHHHHHHHHHHHhC-CCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024982 47 AVDLSDESAFAVRWAVHHYL-RPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADL 125 (259)
Q Consensus 47 avD~s~~s~~al~~A~~lA~-~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 125 (259)
+..-++....|++.|++|.. ..+++++++++-++.. .+.+++. +
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a------------------------~~~lr~a-----------L 76 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA------------------------EEALREA-----------L 76 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh------------------------HHHHHHH-----------H
Confidence 34456888999999999998 6899999999865531 1222210 1
Q ss_pred hhhhhhCCccEEEEEE----ecCc---hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 126 ARPLKEAGFPYKIHIV----KDHD---MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~----~g~~---~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
+ .|.+--.++. .+.+ .+..|...+++.+.|||++|...-.. -.|-+.-.+......|.+-.
T Consensus 77 A-----mGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~-------~t~qvg~~lAe~Lg~P~~t~ 144 (260)
T COG2086 77 A-----MGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDG-------DTGQVGPLLAELLGWPQVTY 144 (260)
T ss_pred h-----cCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccC-------CccchHHHHHHHhCCceeee
Confidence 1 1444222222 2322 56778888899999999999864332 23456666666666666554
No 32
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=89.09 E-value=10 Score=32.58 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=32.0
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCC--CCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRP--GDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~--~a~l~llhV~~~ 80 (259)
..+|+|+++|...|..++.....+.+.. +-++..+|+...
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g 70 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQK 70 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCC
Confidence 4799999999999999988887776543 347888888654
No 33
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=88.68 E-value=4.2 Score=37.43 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=69.8
Q ss_pred CCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 38 ~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
|...+||++++.|+-.+..++++...|-+ .|.++.++- ... +.+-+....
T Consensus 3 ~l~~k~IllgvTGsiaa~k~~~lv~~L~~-~g~~V~vv~--T~~------------------------A~~fi~~~~--- 52 (399)
T PRK05579 3 MLAGKRIVLGVSGGIAAYKALELVRRLRK-AGADVRVVM--TEA------------------------AKKFVTPLT--- 52 (399)
T ss_pred CCCCCeEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEE--CHh------------------------HHHHHhHHH---
Confidence 34568999999999999999999888754 688877653 221 111111100
Q ss_pred HHHHHHHHhhhhhhCCccEEEEEEec--CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 118 TATKAADLARPLKEAGFPYKIHIVKD--HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~v~~~v~~g--~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
++.+ . +.++....... ....+.| +.++ .+|++|+---..+.+.++..|+-.+....++..+.+||
T Consensus 53 ----l~~l----~--~~~V~~~~~~~~~~~~~~hi-~l~~--~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pv 119 (399)
T PRK05579 53 ----FQAL----S--GNPVSTDLWDPAAEAAMGHI-ELAK--WADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPV 119 (399)
T ss_pred ----HHHh----h--CCceEccccccccCCCcchh-hccc--ccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCE
Confidence 1111 1 22222211111 1111222 3333 48999998877777777744455555556667779999
Q ss_pred EEEe
Q 024982 196 VVVR 199 (259)
Q Consensus 196 lvV~ 199 (259)
+++|
T Consensus 120 vi~P 123 (399)
T PRK05579 120 LVAP 123 (399)
T ss_pred EEEe
Confidence 9999
No 34
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=88.19 E-value=12 Score=29.95 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=29.3
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
+++|++.|..+|..++.++.+ .|.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 589999999999998888866 37899999997653
No 35
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=87.41 E-value=10 Score=30.48 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGF 169 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~ 169 (259)
..+.|.+.+++.++|+|++|....
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCccc
Confidence 357788888888999999999865
No 36
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.23 E-value=7 Score=32.18 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=61.6
Q ss_pred EEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 024982 45 GVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAAD 124 (259)
Q Consensus 45 LVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 124 (259)
+|.-.|+=....+.+.|.++..+ +..+.++..... +....++++.
T Consensus 6 lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~----------------------R~ga~eQL~~------------ 50 (196)
T PF00448_consen 6 LVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTY----------------------RIGAVEQLKT------------ 50 (196)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTS----------------------STHHHHHHHH------------
T ss_pred EECCCCCchHhHHHHHHHHHhhc-cccceeecCCCC----------------------CccHHHHHHH------------
Confidence 34444555677888999998887 888888876433 2233444443
Q ss_pred HhhhhhhCCccEEEEEEe-cCchHHHH---HHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc-CCccEEEEe
Q 024982 125 LARPLKEAGFPYKIHIVK-DHDMRERL---CLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVR 199 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~-g~~~~~~I---l~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~-s~~PVlvV~ 199 (259)
+++. .+++ ..... ..++.+.+ ++..++.++|+|++.+.|++....- .+.... ++++. .+..+++|-
T Consensus 51 ~a~~---l~vp--~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~---~~~el~-~~~~~~~~~~~~LVl 121 (196)
T PF00448_consen 51 YAEI---LGVP--FYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEE---LLEELK-KLLEALNPDEVHLVL 121 (196)
T ss_dssp HHHH---HTEE--EEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHH---HHHHHH-HHHHHHSSSEEEEEE
T ss_pred HHHH---hccc--cchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHH---HHHHHH-HHhhhcCCccceEEE
Confidence 2221 1444 33332 23455544 4455667899999999998875543 333333 33333 456566664
No 37
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=87.18 E-value=4.4 Score=31.99 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=48.9
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHH---HhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEI---ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a---~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.++.+++.|++++.+++..+...+.+.+++ ++.++..||-|.-+-..+.++ +...++.||+=||-.
T Consensus 21 Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGm-----------vAa~T~lPViGVPv~ 89 (162)
T COG0041 21 AAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGM-----------VAAKTPLPVIGVPVQ 89 (162)
T ss_pred HHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchh-----------hhhcCCCCeEeccCc
Confidence 445556669999999999876666666665 667788899888765554443 455779999999865
Q ss_pred C
Q 024982 202 D 202 (259)
Q Consensus 202 ~ 202 (259)
.
T Consensus 90 s 90 (162)
T COG0041 90 S 90 (162)
T ss_pred c
Confidence 3
No 38
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=86.86 E-value=5.2 Score=32.46 Aligned_cols=33 Identities=24% Similarity=0.070 Sum_probs=26.5
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
|||++++.|+..+..+.+....|-+ .|.+++++
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~-~g~~V~vi 33 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTK-LGYDVTVL 33 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 6899999999999999977766654 57777654
No 39
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=86.50 E-value=5.1 Score=40.12 Aligned_cols=72 Identities=10% Similarity=-0.022 Sum_probs=51.0
Q ss_pred CCCCCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCc
Q 024982 7 QPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSV 82 (259)
Q Consensus 7 ~~~~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~ 82 (259)
+.+.++++|-|-+.=..... +...........+|.+..=+.+....|+.++.+++......+++++..+...
T Consensus 584 ~~vl~~aPCSVgIlvdRg~~----~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 584 RNVLKNAPCSVGILVDRGLR----RSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDES 655 (769)
T ss_pred HHHHhcCCCeEEEEEecCcc----cccceecccceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccch
Confidence 45778899998776532111 1111111114467778888888899999999999999999999999988754
No 40
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=85.86 E-value=12 Score=32.05 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.0
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.+++++|+++|.-.|..++..+.+. |.++..+|+..+
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~ 47 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSP 47 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCC
Confidence 4588999999999999888877664 667889998643
No 41
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=85.72 E-value=16 Score=33.33 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=30.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.-.|+|+++.|.-+|.-|+-++.+ .|.+++.+|+...
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 348999999999999888876644 4889999999744
No 42
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.70 E-value=1.6 Score=33.34 Aligned_cols=114 Identities=15% Similarity=0.035 Sum_probs=67.5
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
|||++++.|+.....+.++..++.+. |.++.++- .+...+-+....
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~--------------------------S~~A~~~~~~~~------- 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVL--------------------------SPSAERFVTPEG------- 46 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEE--------------------------SHHHHHHSHHHG-------
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEE--------------------------CCcHHHHhhhhc-------
Confidence 68999999999998988888888775 88876653 122222222211
Q ss_pred HHHHhhhhhhCCccEEEE--EEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC---CccEE
Q 024982 122 AADLARPLKEAGFPYKIH--IVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC---VCPVV 196 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~--v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s---~~PVl 196 (259)
.. +-++... .....+....+ +..++ +|++|+.--..+.+.++..|+-.+....++..+ +.||+
T Consensus 47 -------~~--~~~v~~~~~~~~~~~~~~~~-~~~~~--~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvv 114 (129)
T PF02441_consen 47 -------LT--GEPVYTDWDTWDRGDPAEHI-ELSRW--ADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVV 114 (129)
T ss_dssp -------HC--CSCEECTHCTCSTTTTTCHH-HHHHT--ESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEE
T ss_pred -------cc--cchhhhccccCCCCCCcCcc-ccccc--CCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeE
Confidence 00 1111111 01122233333 33444 999999887777777774455566667777777 89999
Q ss_pred EEeCC
Q 024982 197 VVRYP 201 (259)
Q Consensus 197 vV~~~ 201 (259)
++|..
T Consensus 115 i~P~m 119 (129)
T PF02441_consen 115 IAPAM 119 (129)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99863
No 43
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=85.29 E-value=10 Score=35.82 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=71.7
Q ss_pred CCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 38 ~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
+...+||++++.+|-.+..++++...|.+ .|.+++++- .... .+-+...
T Consensus 67 ~l~~k~IllgVtGsIAayka~~lvr~L~k-~G~~V~Vvm--T~sA------------------------~~fv~p~---- 115 (475)
T PRK13982 67 SLASKRVTLIIGGGIAAYKALDLIRRLKE-RGAHVRCVL--TKAA------------------------QQFVTPL---- 115 (475)
T ss_pred ccCCCEEEEEEccHHHHHHHHHHHHHHHh-CcCEEEEEE--CcCH------------------------HHHhhHH----
Confidence 34579999999999999999999988865 688877653 2211 1111110
Q ss_pred HHHHHHHHhhhhhhCCccEEEEEEecC--chHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 118 TATKAADLARPLKEAGFPYKIHIVKDH--DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~v~~~v~~g~--~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
. + +.+. +.++........ ..... ++.+++ +|++|+.--..+.+.++-.|+-....-.++..+.+||
T Consensus 116 ~---~----~~ls--~~~V~~d~~~~~~~~~~~H-i~la~~--aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~Pv 183 (475)
T PRK13982 116 T---A----SALS--GQRVYTDLFDPESEFDAGH-IRLARD--CDLIVVAPATADLMAKMANGLADDLASAILLAANRPI 183 (475)
T ss_pred H---H----HHhc--CCceEecCCCcccccCccc-hhhhhh--cCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCE
Confidence 0 0 1111 222222211110 01111 244544 8999998877777777633344444466666789999
Q ss_pred EEEeCCC
Q 024982 196 VVVRYPD 202 (259)
Q Consensus 196 lvV~~~~ 202 (259)
+++|.-.
T Consensus 184 liaPaMN 190 (475)
T PRK13982 184 LLAPAMN 190 (475)
T ss_pred EEEEcCC
Confidence 9999643
No 44
>PRK13820 argininosuccinate synthase; Provisional
Probab=84.66 E-value=18 Score=33.35 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCC-EEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGD-AVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a-~l~llhV~~~ 80 (259)
+++|+|++.|...|.-++.++.. ..|. +++.+|+...
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd~g 39 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVDVG 39 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEECC
Confidence 48999999999999999988754 3464 8999999754
No 45
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=84.42 E-value=9.8 Score=35.48 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=33.5
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHh-CCCCCEEEEEEEecCC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHY-LRPGDAVILVHVSPTS 81 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA-~~~~a~l~llhV~~~~ 81 (259)
..+|+|++.|..+|...+.....+. ...+.+++++||....
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhgl 56 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGL 56 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCC
Confidence 4889999999999998888887765 3357799999997653
No 46
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=84.20 E-value=18 Score=28.54 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=26.9
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
|+++.+.|..+|..++..+.. .+.++..+|+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~~ 34 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDYG 34 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 589999999999998877765 2557888888653
No 47
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.12 E-value=28 Score=32.40 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=60.7
Q ss_pred EEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 024982 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAA 123 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 123 (259)
.+|.+.||=....+...|.++-+ .+-.+.++....- +..+.++|+.
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~----------------------RpAA~eQL~~----------- 149 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTY----------------------RPAAIEQLKQ----------- 149 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccC----------------------ChHHHHHHHH-----------
Confidence 45667788778888888888877 6777666654322 3344455554
Q ss_pred HHhhhhhhCCccEEEEEEecCchH---HHHHHHHHhcCCcEEEEecCCCCccccc
Q 024982 124 DLARPLKEAGFPYKIHIVKDHDMR---ERLCLEIERLSLSAVIMGSRGFGAEKRG 175 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g~~~~---~~Il~~a~~~~~dLIVlG~~~~~~~~~~ 175 (259)
+++ .-++++-.. ..+.+|. ..=++.+++..+|+||+.|.||..+..-
T Consensus 150 -La~---q~~v~~f~~-~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~ 199 (451)
T COG0541 150 -LAE---QVGVPFFGS-GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEE 199 (451)
T ss_pred -HHH---HcCCceecC-CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHH
Confidence 222 114554443 3344455 4556788899999999999999877665
No 48
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=83.23 E-value=21 Score=31.55 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=32.8
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
+.+++++..+...|.-.+..+.+.....+-++.++|+....
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~ 67 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW 67 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCC
Confidence 57899999999999999988877654445578899997664
No 49
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=82.38 E-value=9.1 Score=30.40 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=46.0
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHH---hcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~---~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+..++..|++++..+..-+...+.+.++++ +.+++.+|.+.-....+ ..-+.-.++.||+=||-+
T Consensus 17 a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~L-----------pgvva~~t~~PVIgvP~~ 85 (156)
T TIGR01162 17 AADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHL-----------PGMVAALTPLPVIGVPVP 85 (156)
T ss_pred HHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchh-----------HHHHHhccCCCEEEecCC
Confidence 3444555689988888887666666666664 46788888777544333 444666789999999965
Q ss_pred C
Q 024982 202 D 202 (259)
Q Consensus 202 ~ 202 (259)
.
T Consensus 86 ~ 86 (156)
T TIGR01162 86 S 86 (156)
T ss_pred c
Confidence 3
No 50
>PLN00200 argininosuccinate synthase; Provisional
Probab=81.63 E-value=40 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++||+|++.|.-.|.-++.++.+ ..|.+++.+|+...
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 57999999999999999988865 24778999998755
No 51
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=81.55 E-value=12 Score=35.26 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=56.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|++ .+.+|..+++.++........ . .....++.+.+.++.+.
T Consensus 10 DLRl~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~~~~--------------~--------~~r~~Fl~esL~~L~~~ 63 (471)
T TIGR03556 10 DLRLSDNIGLAAARQ----QSAKVVGLFCLDPNILQADDM--------------A--------PARVAYLIGCLQELQQR 63 (471)
T ss_pred CCCcchHHHHHHHHh----cCCCEEEEEEEchhhhccccC--------------C--------HHHHHHHHHHHHHHHHH
Confidence 344456778887764 356799999987643211000 0 01113334445556666
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+.|+++ .+..|. +.+.|.+.+++.+++.|+.-..
T Consensus 64 L~~~G~~L--~v~~G~-p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 64 YQQAGSQL--LILQGD-PVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHCCCCe--EEEECC-HHHHHHHHHHHcCCCEEEEecc
Confidence 66656554 556776 8999999999999999997665
No 52
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=80.73 E-value=19 Score=33.05 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=65.7
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
.+||++++.||..+..+++....|.+ .|.++.++- ... +.+-+..+.
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~-~g~~V~vv~--T~~------------------------A~~fv~~~~------ 49 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVR-QGAEVKVIM--TEA------------------------AKKFITPLT------ 49 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEE--CHh------------------------HHHHHHHHH------
Confidence 48999999999999999999988854 588877643 221 112221110
Q ss_pred HHHHHhhhhhhCCccEEEEEEecCchHHHH-HHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 121 KAADLARPLKEAGFPYKIHIVKDHDMRERL-CLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I-l~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
++.+ . +.++... .++....... ++.. ..+|++|+---..+.+.++-.|+-.+....++..+.+|++++|
T Consensus 50 -l~~~----~--~~~v~~~-~~~~~~~~~~hi~l~--~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaP 119 (390)
T TIGR00521 50 -LEAL----S--GHKVVTE-LWGPIEHNALHIDLA--KWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAP 119 (390)
T ss_pred -HHHh----h--CCceeeh-hccccccccchhhcc--cccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEe
Confidence 0111 1 2122111 1221100010 2223 3588888887777777776333444444555555669999999
Q ss_pred C
Q 024982 200 Y 200 (259)
Q Consensus 200 ~ 200 (259)
.
T Consensus 120 a 120 (390)
T TIGR00521 120 A 120 (390)
T ss_pred C
Confidence 7
No 53
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=80.57 E-value=7.8 Score=31.77 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=26.6
Q ss_pred CeEEEeecCChhHHHHH-HHHHHHhCCCCCEEEEEE
Q 024982 42 RKIGVAVDLSDESAFAV-RWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 42 ~rILVavD~s~~s~~al-~~A~~lA~~~~a~l~llh 76 (259)
+||++++.|+..+..++ +....|. +.|++++++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~-~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLV-DEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHH-hCcCEEEEEE
Confidence 58999999999999997 6666664 4688877653
No 54
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=79.74 E-value=17 Score=29.99 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=24.8
Q ss_pred EeecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 024982 46 VAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (259)
Q Consensus 46 VavD~s~~s~~al~~A~~lA~~~~a~l~llhV~ 78 (259)
++.-.++.+..++..+..+++..+++++++.+-
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G 61 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSMG 61 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEEC
Confidence 344456778888989999988888888777653
No 55
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=79.38 E-value=32 Score=27.96 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=26.8
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
||++++.|+..+..+.+....|.+ .|.+++++
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~-~g~~V~vv 32 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE-AGVEVHLV 32 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 699999999999999999988865 57776664
No 56
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=78.48 E-value=21 Score=25.72 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=26.5
Q ss_pred EEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
|+|++.+..+|..++..+.++ +.++.++|+....
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----GYQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 589999999998888888765 2378888886553
No 57
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=77.82 E-value=14 Score=29.19 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024982 52 DESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKE 131 (259)
Q Consensus 52 ~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 131 (259)
-....||..|. +.+.++..+++.++........ ... ...+..+.+..+.+.+.+
T Consensus 11 l~DN~aL~~A~----~~~~~v~~vfv~d~~~~~~~~~--------------~~~--------r~~Fl~~sL~~L~~~L~~ 64 (165)
T PF00875_consen 11 LHDNPALHAAA----QNGDPVLPVFVFDPEEFHPYRI--------------GPR--------RRRFLLESLADLQESLRK 64 (165)
T ss_dssp STT-HHHHHHH----HTTSEEEEEEEE-HHGGTTCSS--------------CHH--------HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHH----HcCCCeEEEEEecccccccccC--------------cch--------HHHHHHHHHHHHHHHHHh
Confidence 34566777663 3578899999987751100000 111 112233334555566655
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.|+ ...+..|+ +.+.+.+.+++.+++.|+....-.....+. -....+.+.+..+.+..+...
T Consensus 65 ~g~--~L~v~~g~-~~~~l~~l~~~~~~~~V~~~~~~~~~~~~r-----d~~v~~~l~~~~i~~~~~~~~ 126 (165)
T PF00875_consen 65 LGI--PLLVLRGD-PEEVLPELAKEYGATAVYFNEEYTPYERRR-----DERVRKALKKHGIKVHTFDDH 126 (165)
T ss_dssp TTS---EEEEESS-HHHHHHHHHHHHTESEEEEE---SHHHHHH-----HHHHHHHHHHTTSEEEEE--S
T ss_pred cCc--ceEEEecc-hHHHHHHHHHhcCcCeeEeccccCHHHHHH-----HHHHHHHHHhcceEEEEECCc
Confidence 454 56777877 899999999999999999876533221111 122334445556888877754
No 58
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.51 E-value=36 Score=30.53 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=59.8
Q ss_pred EEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 024982 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAA 123 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 123 (259)
.+|.+.|+=........|..+- +.|-.+.+.-...- +..+.++++. |.+
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTF----------------------RAaAiEQL~~--------w~e 191 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTF----------------------RAAAIEQLEV--------WGE 191 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchH----------------------HHHHHHHHHH--------HHH
Confidence 4566777766666666665554 46777766543221 4444445443 333
Q ss_pred HHhhhhhhCCccEEEEEEecCchHHHH---HHHHHhcCCcEEEEecCCCCccccc
Q 024982 124 DLARPLKEAGFPYKIHIVKDHDMRERL---CLEIERLSLSAVIMGSRGFGAEKRG 175 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g~~~~~~I---l~~a~~~~~dLIVlG~~~~~~~~~~ 175 (259)
+. |+++...- .|.||+..+ ++.++..++|.|++.+.||-.-+.-
T Consensus 192 r~-------gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~n 238 (340)
T COG0552 192 RL-------GVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKN 238 (340)
T ss_pred Hh-------CCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchh
Confidence 32 77777754 788887655 3667889999999999887655544
No 59
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=76.56 E-value=48 Score=30.10 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=28.8
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
..+||+|+++|.-.|.-++..+.+ .|.+++.+|+..
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~ 39 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRF 39 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEec
Confidence 447999999999999887776654 477899998864
No 60
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=76.49 E-value=19 Score=33.28 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=57.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|+.. +.+|..+++.++........... .........+..+.++++.+.
T Consensus 10 DLRl~DN~aL~~A~~~----~~~vl~vfi~dp~~~~~~~~~~~----------------~~~~~~r~~Fl~esL~~L~~~ 69 (429)
T TIGR02765 10 DLRVHDNPALYKASSS----SDTLIPLYCFDPRQFKLTHFFGF----------------PKTGPARGKFLLESLKDLRTS 69 (429)
T ss_pred CCccccHHHHHHHHhc----CCeEEEEEEECchHhcccccccc----------------CCCCHHHHHHHHHHHHHHHHH
Confidence 4445567788777653 34788888887753221000000 000111122333445566666
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+.|++. .+..|+ +.+.|.+.+++.+++.|+.-..
T Consensus 70 L~~~g~~L--~v~~G~-~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 70 LRKLGSDL--LVRSGK-PEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHcCCCe--EEEeCC-HHHHHHHHHHHhCCCEEEEecc
Confidence 76656654 556675 8999999999999999998765
No 61
>PRK00509 argininosuccinate synthase; Provisional
Probab=76.25 E-value=22 Score=32.80 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=30.7
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++||+|++.|.-+|.-++.++.+- .|.+++.+|+...
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~G 38 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVG 38 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecC
Confidence 479999999999999998887652 3788999998765
No 62
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=75.19 E-value=17 Score=28.67 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=40.7
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhc---CCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERL---SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~---~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
.+.+++.|+.++..+.....-.+.+.+++++. +++.+|.+.-... ....-+.-.+..||+=||-..
T Consensus 20 ~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a-----------~Lpgvva~~t~~PVIgvP~~~ 88 (150)
T PF00731_consen 20 AKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSA-----------ALPGVVASLTTLPVIGVPVSS 88 (150)
T ss_dssp HHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS-------------HHHHHHHHSSS-EEEEEE-S
T ss_pred HHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcc-----------cchhhheeccCCCEEEeecCc
Confidence 34445558999988888766677777777664 5687777664322 334556677899999998653
No 63
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=74.63 E-value=56 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=29.4
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
++++|++.|.-.|.-++..+.+. .|.+++.+|+....
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCCC
Confidence 78999999999998877766542 35789999997653
No 64
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=74.60 E-value=37 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=28.7
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+|+|++.|..+|..++..+....... .++.++|+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 58999999999999988887765432 47888888654
No 65
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=74.45 E-value=45 Score=27.09 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=25.8
Q ss_pred EEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
|+|++.|..+|..++..+.... +.++..+|+...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g 34 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSP 34 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCC
Confidence 5889999999988887776642 237888888654
No 66
>PRK10867 signal recognition particle protein; Provisional
Probab=72.19 E-value=56 Score=30.52 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=52.3
Q ss_pred eecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 024982 47 AVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLA 126 (259)
Q Consensus 47 avD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (259)
...|+=.+..+...|..+++..|..+.++....- +....++++. ++
T Consensus 107 G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~----------------------R~aa~eQL~~------------~a 152 (433)
T PRK10867 107 GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY----------------------RPAAIEQLKT------------LG 152 (433)
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc----------------------chHHHHHHHH------------HH
Confidence 3345556778888998887765777777765432 2223333332 11
Q ss_pred hhhhhCCccEEEEEEecCchHH---HHHHHHHhcCCcEEEEecCCCCccccc
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRE---RLCLEIERLSLSAVIMGSRGFGAEKRG 175 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~---~Il~~a~~~~~dLIVlG~~~~~~~~~~ 175 (259)
...++++.... .+.+|.+ ..++.++..++|+|++.+.|+......
T Consensus 153 ---~~~gv~v~~~~-~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~ 200 (433)
T PRK10867 153 ---EQIGVPVFPSG-DGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEE 200 (433)
T ss_pred ---hhcCCeEEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHH
Confidence 11255543321 2334443 334566777899999999998765443
No 67
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=71.17 E-value=60 Score=28.02 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
...|++|+..|.-+|...+..|..- .|.++..+++..+.
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~---lG~~v~AvTv~sP~ 54 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEA---LGDNVVAVTVDSPY 54 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHH---hccceEEEEEecCC
Confidence 4469999999998888777766553 45777888877653
No 68
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=70.51 E-value=15 Score=32.41 Aligned_cols=66 Identities=9% Similarity=0.041 Sum_probs=40.1
Q ss_pred CccEEEEEEecCchHHHHHHHHHhc-------CCcEEEEecCCCCcccccCCCcCC-cHHHHHhhcCCccEEEEeCC
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERL-------SLSAVIMGSRGFGAEKRGSDGKLG-SVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~-------~~dLIVlG~~~~~~~~~~~~~l~g-s~~~~ll~~s~~PVlvV~~~ 201 (259)
.+.+-...+.|.+....|++..+.. ++|.||++.-|-|...=+ -|. -.--+-+..|++||+.-=.+
T Consensus 43 ~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~---~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 43 EIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLW---AFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred EEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhc---ccChHHHHHHHHhCCCCEEEecCC
Confidence 4455556677888888887766554 489999998766532222 222 22233344688888765433
No 69
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=70.30 E-value=64 Score=28.74 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCc
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSV 82 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~ 82 (259)
+++++++..+..+|.-.+..+.+.....+.++-++|+.....
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~ 78 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWK 78 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCC
Confidence 467889999999999999999887655566889999876643
No 70
>PRK00919 GMP synthase subunit B; Validated
Probab=69.85 E-value=78 Score=28.10 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=30.5
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
++++|++.|.-.|..++.++.+ ..|.+++.+|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~---~lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHR---AIGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHH---HhCCeEEEEEEECCC
Confidence 7899999999999988877755 247789999998664
No 71
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=68.66 E-value=72 Score=29.37 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=28.6
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
||++++.|.-.|..++.++.+. |.+++.+|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5899999999999999887653 789999999754
No 72
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=68.65 E-value=66 Score=26.60 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=78.1
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
+||.|-+.++=....|+-.|+. ....++++.++-....+. ...++
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A----------------------~~ler------------ 45 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADA----------------------YALER------------ 45 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCC----------------------HHHHH------------
Confidence 3677777777666777777766 444577777765543321 11112
Q ss_pred HHHHhhhhhhCCccEEEEEEecC----chHHHHHHHHHhcCCcEEEEecCC-----------CCcc----cccCCCcCCc
Q 024982 122 AADLARPLKEAGFPYKIHIVKDH----DMRERLCLEIERLSLSAVIMGSRG-----------FGAE----KRGSDGKLGS 182 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~----~~~~~Il~~a~~~~~dLIVlG~~~-----------~~~~----~~~~~~l~gs 182 (259)
.++.|+.....-.... ....+|.+..++.++|+||+..-- .+++ ..+++.|-|-
T Consensus 46 -------A~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~ 118 (200)
T COG0299 46 -------AAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGL 118 (200)
T ss_pred -------HHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCc
Confidence 1223666433222222 156789999999999999995421 0100 0111113332
Q ss_pred -HHHHHhh----cCCccEEEEeCCCCCCCCCCeeeecCCCCCCcchhhhcccc
Q 024982 183 -VSDYCVH----HCVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRKLK 230 (259)
Q Consensus 183 -~~~~ll~----~s~~PVlvV~~~~~~~~~~~l~av~~~~~~~~~~~~~~~~~ 230 (259)
+-++.++ .+.|.|+.|...-+..+--.=.+|+. .++|..+.+..++.
T Consensus 119 h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~~Vpv-~~~Dt~etl~~RV~ 170 (200)
T COG0299 119 HAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQAAVPV-LPGDTAETLEARVL 170 (200)
T ss_pred hHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEEeeee-cCCCCHHHHHHHHH
Confidence 2234443 36799999997654432222223433 34446666666653
No 73
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=66.43 E-value=5.9 Score=29.00 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.1
Q ss_pred chHHHHHHHHHhcCCcEEEEecC
Q 024982 145 DMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+-.+.|+++++++++||+|+|..
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSH
T ss_pred CCHHHHHHHHHHcCCCEEEECCh
Confidence 35889999999999999999984
No 74
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=66.21 E-value=84 Score=26.89 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=69.8
Q ss_pred CCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 38 ~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
|.-..-.=+|+.+.-.....++.++++|++.|..+- .|.-+++.. . .+... .....+.+.+.
T Consensus 24 mp~I~saNIACG~HAGDp~~M~~tv~lA~~~gV~iG-AHPsyPD~~-g--FGRr~----------m~~s~~el~~~---- 85 (242)
T PF03746_consen 24 MPYISSANIACGFHAGDPETMRRTVRLAKEHGVAIG-AHPSYPDRE-G--FGRRS----------MDISPEELRDS---- 85 (242)
T ss_dssp TTT-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEE-EE---S-TT-T--TT-S---------------HHHHHHH----
T ss_pred HHHhhhHHHhhcccccCHHHHHHHHHHHHHcCCEec-cCCCCCCCC-C--CCCCC----------CCCCHHHHHHH----
Confidence 334466778999999999999999999998887654 455444311 0 11110 11122223222
Q ss_pred HHHHHHHHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh
Q 024982 118 TATKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV 188 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll 188 (259)
.......+...++..|.++...--+| ...++.|++.+++.+.+|.++|.. ||.-.+..
T Consensus 86 v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a-------------gs~~~~~A 152 (242)
T PF03746_consen 86 VLYQIGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA-------------GSELEKAA 152 (242)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET-------------TSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC-------------CcHHHHHH
Confidence 22223445555566688876665554 447889999999999999999875 46677778
Q ss_pred hcCCccEEE
Q 024982 189 HHCVCPVVV 197 (259)
Q Consensus 189 ~~s~~PVlv 197 (259)
++...+++-
T Consensus 153 ~~~Gl~~~~ 161 (242)
T PF03746_consen 153 KELGLPVVF 161 (242)
T ss_dssp HHCT--EEE
T ss_pred HHCCCcEEE
Confidence 888877754
No 75
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=66.15 E-value=64 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFG 170 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~ 170 (259)
..+.|.+.+++.++|+|++|....+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g 95 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFG 95 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccc
Confidence 5677888888889999999998643
No 76
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=65.37 E-value=93 Score=29.01 Aligned_cols=92 Identities=20% Similarity=0.121 Sum_probs=52.4
Q ss_pred EEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 024982 45 GVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAAD 124 (259)
Q Consensus 45 LVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 124 (259)
++...|+=.+..+...|..+..+.|..+.++....- +....++++.
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~----------------------R~~a~~QL~~------------ 149 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY----------------------RPAAIEQLKV------------ 149 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc----------------------chHHHHHHHH------------
Confidence 344445666778888888876556777777755432 2222333332
Q ss_pred HhhhhhhCCccEEEEEEecCchHH---HHHHHHHhcCCcEEEEecCCCCcccc
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRE---RLCLEIERLSLSAVIMGSRGFGAEKR 174 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~---~Il~~a~~~~~dLIVlG~~~~~~~~~ 174 (259)
.+ ...++++.... .+.+|.+ ..++.+...++|+|++.+.|+.....
T Consensus 150 ~a---~~~gvp~~~~~-~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~ 198 (428)
T TIGR00959 150 LG---QQVGVPVFALG-KGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDE 198 (428)
T ss_pred HH---HhcCCceEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCH
Confidence 11 11245533322 2344543 34455667889999999999876433
No 77
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=63.96 E-value=94 Score=27.38 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=27.8
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
|++|++.|.-+|.-++..+.+. .|.+++.+|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 5899999999998888777652 3567999998655
No 78
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=63.79 E-value=1e+02 Score=27.12 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
+++.+++..+...|.-++..+.+.....+-++.++|+....
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~ 59 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGW 59 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCC
Confidence 45678889999999999988877665445689999997664
No 79
>TIGR00930 2a30 K-Cl cotransporter.
Probab=63.54 E-value=1.3e+02 Score=31.18 Aligned_cols=97 Identities=14% Similarity=0.024 Sum_probs=64.0
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
-++||.++.......+++.|-.+.+ .++-..+.||...+. .+ ..++.++ .++....
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~-~~gl~i~~~v~~~~~--------------------~~-~~~~~~~-~~~~~~~- 631 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTK-GKGLMICGSVIQGPR--------------------LE-CVKEAQA-AEAKIQT- 631 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhcc-CCcEEEEEEEecCch--------------------hh-hHHHHHH-HHHHHHH-
Confidence 4799999877788899999999885 456777778886542 11 1111111 1111222
Q ss_pred HHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhc-----CCcEEEEecCC
Q 024982 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERL-----SLSAVIMGSRG 168 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~-----~~dLIVlG~~~ 168 (259)
.++..+++.-..++.+.+..+++-...+.. ++..|++|...
T Consensus 632 ------~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 632 ------WLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred ------HHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 233447777777888888888888877764 58899999874
No 80
>PRK08185 hypothetical protein; Provisional
Probab=63.50 E-value=15 Score=32.24 Aligned_cols=70 Identities=16% Similarity=-0.017 Sum_probs=53.3
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..+.+..+-..-++......++++.|++.+.-+|+..+.+.-...+. -+......+.+++++||.+-=++
T Consensus 8 A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~---~~~~~~~~~a~~~~vPV~lHLDH 77 (283)
T PRK08185 8 AKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGD---NFFAYVRERAKRSPVPFVIHLDH 77 (283)
T ss_pred HHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccH---HHHHHHHHHHHHCCCCEEEECCC
Confidence 34446777777777777999999999999999999988766443334 46777888999999998765433
No 81
>PRK08349 hypothetical protein; Validated
Probab=63.31 E-value=63 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=27.6
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
.|+++++.|..+|..++-++.+ .|.++..+|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 3689999999999988865543 478999999975
No 82
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=62.71 E-value=59 Score=30.53 Aligned_cols=90 Identities=18% Similarity=0.073 Sum_probs=52.4
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|++ .+ ++..|+|.++....... . ......++.+.++.+.+.
T Consensus 7 DLRl~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~~~---------------~-------~~~~~~fl~~sL~~L~~~ 59 (475)
T TIGR02766 7 DLRVEDNPALAAAAR----AG-PVIPVFVWAPEEEGQYY---------------P-------GRVSRWWLKQSLAHLDQS 59 (475)
T ss_pred CCCcchHHHHHHHHh----CC-CEEEEEEechHHhcccc---------------c-------cHHHHHHHHHHHHHHHHH
Confidence 334455677766653 23 68888888764221000 0 001112333445556666
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+.|.+..+ ..++++.+.|.+.+++.+++-|..-..
T Consensus 60 L~~~G~~L~v--~~~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 60 LRSLGTCLVT--IRSTDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHcCCceEE--EeCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 6665655443 334458999999999999998877654
No 83
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=61.65 E-value=62 Score=30.45 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|+..+ +.++..++|.++....... .......++.+.+.++.+.
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~----------------------~~~~r~~Fl~esL~~L~~~ 65 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAAHD----------------------MAPRQAAFINAQLNALQIA 65 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhccCC----------------------CCHHHHHHHHHHHHHHHHH
Confidence 45556677887776533 2468899998774221100 0111123344445566666
Q ss_pred hhhCCccEEEEEEec---CchHHHHHHHHHhcCCcEEEEecC
Q 024982 129 LKEAGFPYKIHIVKD---HDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g---~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+.|++. .+..| +++.+.+.+.+++.+++-|+.-..
T Consensus 66 L~~~g~~L--~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 66 LAEKGIPL--LFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHcCCce--EEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 66666554 55554 358999999999999999988654
No 84
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=60.26 E-value=63 Score=23.38 Aligned_cols=43 Identities=16% Similarity=0.049 Sum_probs=31.3
Q ss_pred cCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 143 DHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 143 g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
|..-.++|.+.++..++|+||.... +-++..+.+-+...|+|+
T Consensus 42 G~GK~eei~~~~~~~~~d~vvfd~~-----------Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 42 GSGKVEEIKELIEELDADLVVFDNE-----------LSPSQQRNLEKALGVKVI 84 (95)
T ss_pred chhHHHHHHHHHhhcCCCEEEECCC-----------CCHHHHHHHHHHHCCeee
Confidence 4446899999999999999999864 334455556666667663
No 85
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=59.24 E-value=1.5e+02 Score=28.04 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=43.7
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC---CcccccCCCcCCc-HHHHHhhcCCccEEEEeCCCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGS-VSDYCVHHCVCPVVVVRYPDD 203 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~---~~~~~~~~~l~gs-~~~~ll~~s~~PVlvV~~~~~ 203 (259)
.+...|+++++..+.+- .-|. ..++-|++|.|.- +.+-. .-|- ...-+.++.++||+++=+...
T Consensus 405 ~Lv~~GinctYv~I~a~---syim-----~evtkvfLGahailsNG~vys----R~GTa~valvAna~nVPVlVCCE~yK 472 (556)
T KOG1467|consen 405 RLVDRGINCTYVLINAA---SYIM-----LEVTKVFLGAHAILSNGAVYS----RVGTACVALVANAFNVPVLVCCEAYK 472 (556)
T ss_pred HHHHcCCCeEEEEehhH---HHHH-----HhcceeeechhhhhcCcchhh----hcchHHHHHHhcccCCCEEEEechhh
Confidence 34445999999888753 3333 3368999999742 11111 1132 233455667899999987655
Q ss_pred CCCCCCeeee
Q 024982 204 KDDGEPLVKV 213 (259)
Q Consensus 204 ~~~~~~l~av 213 (259)
...+--+-++
T Consensus 473 F~eRvQlDsi 482 (556)
T KOG1467|consen 473 FHERVQLDSI 482 (556)
T ss_pred hhhhhhhhhh
Confidence 5544444433
No 86
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=59.18 E-value=28 Score=32.00 Aligned_cols=36 Identities=19% Similarity=0.052 Sum_probs=29.8
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
..++|||++.+|-.+..++..+..|-+ .|+++.++-
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~L~~-~ga~v~vvm 38 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRLLRR-SGAEVRVVM 38 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHHHhh-CCCeeEEEc
Confidence 347999999999999999988877654 789888764
No 87
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=59.13 E-value=1.2e+02 Score=27.72 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=26.9
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~ 78 (259)
..+||+|+++|.-.|..++.... ..|.++..+|+.
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~ 38 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMR 38 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEec
Confidence 34799999999999887776433 357788888884
No 88
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=58.72 E-value=40 Score=24.82 Aligned_cols=44 Identities=18% Similarity=0.100 Sum_probs=31.1
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCc
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGA 171 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~ 171 (259)
+..++..|.++ ......-+.+.+++.+.+.++|+|.+.......
T Consensus 20 ~~~l~~~G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~ 63 (119)
T cd02067 20 ARALRDAGFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTH 63 (119)
T ss_pred HHHHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 34445557665 333345578899999999999999998874433
No 89
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=57.72 E-value=15 Score=28.43 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCC-cc---cccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFG-AE---KRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~-~~---~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
....|.+.+++++++.||+|-.-.. +. ... ..-..+++|-++.++||..+-+.
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~---~v~~f~~~L~~~~~~~v~~~DEr 98 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTE---RARKFANRLEGRFGLPVVLVDER 98 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHH---HHHHHHHHHHHHhCCCEEEEcCC
Confidence 4788999999999999999965321 11 111 22345677777778999998754
No 90
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.58 E-value=1.2e+02 Score=26.29 Aligned_cols=67 Identities=10% Similarity=0.015 Sum_probs=42.3
Q ss_pred HHHHhhhhhhCCccEEEEEEecCc------hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 122 AADLARPLKEAGFPYKIHIVKDHD------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~~------~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
+.++++.+.+.|+.+-...-.|.. ....-.+.+.+.++|+|=.-..+ ..-+++++.|++||
T Consensus 129 l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~-------------~~f~~vv~a~~vPV 195 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE-------------EGFERITAGCPVPI 195 (264)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH-------------HHHHHHHHcCCCcE
Confidence 444667777778886664444432 23334566678888887554432 23457788999999
Q ss_pred EEEeCC
Q 024982 196 VVVRYP 201 (259)
Q Consensus 196 lvV~~~ 201 (259)
++--.+
T Consensus 196 viaGG~ 201 (264)
T PRK08227 196 VIAGGK 201 (264)
T ss_pred EEeCCC
Confidence 977544
No 91
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=57.40 E-value=1e+02 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=25.4
Q ss_pred eEEEeecCC-hhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 43 KIGVAVDLS-DESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 43 rILVavD~s-~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
||++++-+| ......+++...++++.|.++.++
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv 34 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVF 34 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 689999998 444567888888887778887765
No 92
>PRK00074 guaA GMP synthase; Reviewed
Probab=56.93 E-value=1.5e+02 Score=28.33 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=29.0
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++++|++.|.-+|.-++..+.+. .|.++..+|+...
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd~g 251 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVDHG 251 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEeCC
Confidence 78999999999998888777653 2678999998654
No 93
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=56.86 E-value=1.3e+02 Score=28.18 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=50.5
Q ss_pred EEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 024982 45 GVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAAD 124 (259)
Q Consensus 45 LVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 124 (259)
++...|+=.+..+...|..+.+ .|..+.++...+. +..+.++++.
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~----------------------R~aA~eQLk~------------ 149 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTF----------------------RAGAFDQLKQ------------ 149 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCccc----------------------chhHHHHHHH------------
Confidence 3334466566777788876654 4667777654322 2222223322
Q ss_pred HhhhhhhCCccEEEEEEecCchHH---HHHHHHHhcCCcEEEEecCCCCccccc
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRE---RLCLEIERLSLSAVIMGSRGFGAEKRG 175 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~---~Il~~a~~~~~dLIVlG~~~~~~~~~~ 175 (259)
.++ ..++++... ..+.+|.. .-++.++..++|+|++.+.|+......
T Consensus 150 ~a~---~~~vp~~~~-~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~ 199 (429)
T TIGR01425 150 NAT---KARIPFYGS-YTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDS 199 (429)
T ss_pred Hhh---ccCCeEEee-cCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHH
Confidence 222 124554322 22334543 234556667899999999998766544
No 94
>PRK06801 hypothetical protein; Provisional
Probab=56.45 E-value=30 Score=30.33 Aligned_cols=72 Identities=13% Similarity=0.012 Sum_probs=54.4
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc-cCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR-GSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~-~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+...+.+..+-..-++......++++.|++.+.-+|+..+.+.....+ . .+......+.+++++||.+-=++
T Consensus 11 ~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~---~~~~~~~~~a~~~~vpV~lHlDH 83 (286)
T PRK06801 11 AHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLE---SLVEAVKFEAARHDIPVVLNLDH 83 (286)
T ss_pred HHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHH---HHHHHHHHHHHHCCCCEEEECCC
Confidence 334444777777777787799999999999999999988876543222 2 46778889999999998775444
No 95
>PRK05406 LamB/YcsF family protein; Provisional
Probab=56.33 E-value=99 Score=26.53 Aligned_cols=124 Identities=12% Similarity=0.040 Sum_probs=75.1
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
-.=+++.+.-.....++.++++|++.|..+-. |.-+++.. ..+...+. ...+.+.+....+ .
T Consensus 31 sANIACG~HAGDp~~M~~tv~lA~~~gV~IGA-HPgypD~~---gFGRR~m~----------~s~~el~~~v~yQ----i 92 (246)
T PRK05406 31 SANIACGFHAGDPAVMRRTVRLAKENGVAIGA-HPGYPDLE---GFGRRNMD----------LSPEELYALVLYQ----I 92 (246)
T ss_pred hHHHhccccCCCHHHHHHHHHHHHHcCCeEcc-CCCCCccC---CCCCCCCC----------CCHHHHHHHHHHH----H
Confidence 34467788888888999999999988876643 44333210 11111110 1112222222211 2
Q ss_pred HHHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCc
Q 024982 123 ADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~ 193 (259)
..+...++..|.++...--+| ...+++|++.++..+.+|++++.. ||.-++..+....
T Consensus 93 gAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~-------------~s~~~~~A~~~Gl 159 (246)
T PRK05406 93 GALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLA-------------GSELIRAAEEAGL 159 (246)
T ss_pred HHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHHHcCC
Confidence 334444555677766655444 457899999999999999998854 4566777788887
Q ss_pred cEEE
Q 024982 194 PVVV 197 (259)
Q Consensus 194 PVlv 197 (259)
|++-
T Consensus 160 ~~~~ 163 (246)
T PRK05406 160 RTAS 163 (246)
T ss_pred cEEE
Confidence 7764
No 96
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=55.57 E-value=31 Score=28.50 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=28.9
Q ss_pred CCCCeEEEeecCChhHHH-HHHHHHHHhCCCCCEEEEE
Q 024982 39 LARRKIGVAVDLSDESAF-AVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~-al~~A~~lA~~~~a~l~ll 75 (259)
...+||++++.|+-.+.. +++.+..+.+ .|.+++++
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k-~G~~V~vv 39 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVD-EGAEVTPI 39 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHh-CcCEEEEE
Confidence 456899999999999999 5888877754 58887765
No 97
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=55.27 E-value=71 Score=26.92 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=23.6
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
.+.+.++...+--| ....-+..+.+.++|.+|+|+.
T Consensus 166 ~~~~~~~~IeVDGG--I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 166 DALGKPIRLEIDGG--VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HhcCCCeeEEEECC--CCHHHHHHHHHcCCCEEEEChh
Confidence 33355544444444 5555667777889999999974
No 98
>PRK05370 argininosuccinate synthase; Validated
Probab=54.57 E-value=1.7e+02 Score=27.41 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
..+||++|..+.-.+.-++.|-..- |.+++.+++.-.
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvG 46 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 46 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECC
Confidence 4589999999999998888887652 889999988754
No 99
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.54 E-value=88 Score=23.30 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=25.6
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
||++++-+++.....+..+..+.+..|-+++-+-.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~ 35 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGL 35 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCC
Confidence 46777777777888888888888877777665543
No 100
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=54.27 E-value=43 Score=31.10 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=39.5
Q ss_pred ccEEEEEEecCchHHHHHHHHHhcC---CcEEEEecCCCCcccccCCCcCC-cHHHHHhhcCCccEEEEeCCC
Q 024982 134 FPYKIHIVKDHDMRERLCLEIERLS---LSAVIMGSRGFGAEKRGSDGKLG-SVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 134 v~v~~~v~~g~~~~~~Il~~a~~~~---~dLIVlG~~~~~~~~~~~~~l~g-s~~~~ll~~s~~PVlvV~~~~ 202 (259)
+.+-...+.|......|++..+..+ +|.||+|.-|-|.-.=+ -|. -.--+-+..|++||+.-=.++
T Consensus 165 ~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~---~Fn~e~v~~ai~~~~~Pvis~IGHE 234 (438)
T PRK00286 165 VIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLW---AFNDEAVARAIAASRIPVISAVGHE 234 (438)
T ss_pred EEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhh---ccCcHHHHHHHHcCCCCEEEeccCC
Confidence 3444455678878888877665544 59999998766532212 222 222334446889988754443
No 101
>PRK12569 hypothetical protein; Provisional
Probab=54.19 E-value=1.1e+02 Score=26.33 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=73.7
Q ss_pred EEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 024982 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAA 123 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 123 (259)
.=+++.+.-.....++.+.++|++.|..|-. |.-+++.. . .+...+ ....+.+.+....+ ..
T Consensus 35 aNIACG~HAGDp~~M~~tv~lA~~~~V~IGA-HPsyPD~~-g--FGRr~m----------~~s~~el~~~v~yQ----ig 96 (245)
T PRK12569 35 ANIATGFHAGDPNIMRRTVELAKAHGVGIGA-HPGFRDLV-G--FGRRHI----------NASPQELVNDVLYQ----LG 96 (245)
T ss_pred HHHhccccCCCHHHHHHHHHHHHHcCCEecc-CCCCCcCC-C--CCCCCC----------CCCHHHHHHHHHHH----HH
Confidence 4467778877888999999999988876643 44333210 1 111111 01112222222211 23
Q ss_pred HHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCcc
Q 024982 124 DLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCP 194 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~P 194 (259)
.+...+...|.++...--+| ...+++|++.+++.+.+|++++.. ||.-.+..+....+
T Consensus 97 aL~~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~-------------~s~~~~~A~~~Gl~ 163 (245)
T PRK12569 97 ALREFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMD-------------GSATERAARELGQP 163 (245)
T ss_pred HHHHHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC-------------CcHHHHHHHHcCCC
Confidence 34444555677766554443 457899999999999998888753 45666777777777
Q ss_pred EEE
Q 024982 195 VVV 197 (259)
Q Consensus 195 Vlv 197 (259)
++-
T Consensus 164 ~~~ 166 (245)
T PRK12569 164 VVR 166 (245)
T ss_pred eEE
Confidence 764
No 102
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=53.89 E-value=49 Score=30.83 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=39.9
Q ss_pred CccEEEEEEecCchHHHHHHHHHh----cCCcEEEEecCCCCcccccCCCcCC-cHHHHHhhcCCccEEEEeCCC
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIER----LSLSAVIMGSRGFGAEKRGSDGKLG-SVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~----~~~dLIVlG~~~~~~~~~~~~~l~g-s~~~~ll~~s~~PVlvV~~~~ 202 (259)
.+.+-...+.|......|++..+. .++|.||+|.-|-+.-.=+ -|. -.--+-+..|++||+.-=.++
T Consensus 158 ~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~---~Fn~e~~~rai~~~~~Pvis~iGHe 229 (432)
T TIGR00237 158 KVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLW---SFNDEKVARAIFLSKIPIISAVGHE 229 (432)
T ss_pred eEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhh---hcCcHHHHHHHHcCCCCEEEecCcC
Confidence 344444557788788887776653 3379999998765543222 222 222233457889988764443
No 103
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.22 E-value=1.2e+02 Score=28.16 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=66.6
Q ss_pred CeEEEeecCCh-hHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSD-ESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 42 ~rILVavD~s~-~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
.-||+.=|+.- .|.-+|+.+.++|++. .+|||.-.++ .++.+-
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES------------------------~~Qikl-------- 137 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEES------------------------LQQIKL-------- 137 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcC------------------------HHHHHH--------
Confidence 34566656543 4778899999999854 6777754432 111111
Q ss_pred HHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHH---------HHhhcC
Q 024982 121 KAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSD---------YCVHHC 191 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~---------~ll~~s 191 (259)
+.+..++...-..+-...-.+.|++.+++.++|++|+.+=..=....+ ..--||++. ++.++.
T Consensus 138 -------RA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~-~SapGsVsQVRe~t~~L~~~AK~~ 209 (456)
T COG1066 138 -------RADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEI-TSAPGSVSQVREVAAELMRLAKTK 209 (456)
T ss_pred -------HHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccc-cCCCCcHHHHHHHHHHHHHHHHHc
Confidence 111114332333333444588899999999999999998432111111 002344432 455667
Q ss_pred CccEEEEeC
Q 024982 192 VCPVVVVRY 200 (259)
Q Consensus 192 ~~PVlvV~~ 200 (259)
.+++++|-+
T Consensus 210 ~i~~fiVGH 218 (456)
T COG1066 210 NIAIFIVGH 218 (456)
T ss_pred CCeEEEEEE
Confidence 899999865
No 104
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.96 E-value=34 Score=30.00 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=52.3
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+...+.+..+-..-+.+.+...++++.|++.+.-+|+..+.+.-...+. ..+......+.+++++||.+-=++
T Consensus 11 ~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~--~~~~~~~~~~A~~~~VPValHLDH 83 (284)
T PRK12857 11 KKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGI--EYISAMVRTAAEKASVPVALHLDH 83 (284)
T ss_pred HHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCH--HHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344446677777777777999999999999999999887654322111 034667788889999998875443
No 105
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=52.47 E-value=1.1e+02 Score=26.25 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCc-HHHHHhhcCCccEEEEeCCCCCCCCCCeeeecCCCCCCcchh
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGS-VSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDH 224 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs-~~~~ll~~s~~PVlvV~~~~~~~~~~~l~av~~~~~~~~~~~ 224 (259)
..+......+++++|++|+.+.... .-|+ -++.++..+.+|++++.+..... ..++
T Consensus 48 ~~~~~~~~~~~~~pDf~i~isPN~a--------~PGP~~ARE~l~~~~iP~IvI~D~p~~K---------------~~d~ 104 (277)
T PRK00994 48 VEEVVKKMLEEWKPDFVIVISPNPA--------APGPKKAREILKAAGIPCIVIGDAPGKK---------------VKDA 104 (277)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCC--------CCCchHHHHHHHhcCCCEEEEcCCCccc---------------hHHH
Confidence 3444555667899999999886432 2233 58899999999999997542210 1255
Q ss_pred hhccccceeeee
Q 024982 225 VDRKLKGFFFLF 236 (259)
Q Consensus 225 ~~~~~~~~~~~~ 236 (259)
+.++..||+...
T Consensus 105 l~~~g~GYIivk 116 (277)
T PRK00994 105 MEEQGLGYIIVK 116 (277)
T ss_pred HHhcCCcEEEEe
Confidence 666777887665
No 106
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=52.20 E-value=35 Score=29.90 Aligned_cols=73 Identities=7% Similarity=0.123 Sum_probs=52.2
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+...+.+..+-..-+.......++++.|++.+.-+|+.-+.+.-...+. ..+......+.+++++||.+-=++
T Consensus 11 ~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~--~~~~~~~~~~a~~~~VPValHLDH 83 (284)
T PRK12737 11 KKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGT--DYIVAIAEVAARKYNIPLALHLDH 83 (284)
T ss_pred HHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCH--HHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344447777777777777999999999999999999877644322111 134677888999999998775443
No 107
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=51.35 E-value=46 Score=30.07 Aligned_cols=78 Identities=18% Similarity=0.051 Sum_probs=53.7
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccC-----CC--------cCCcHHHHHhhcC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGS-----DG--------KLGSVSDYCVHHC 191 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~-----~~--------l~gs~~~~ll~~s 191 (259)
+.....+.+..+-..-++......++++.|++.+..+|+.-+.+........ ++ .++.....+.+++
T Consensus 7 iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 86 (345)
T cd00946 7 LFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHY 86 (345)
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 3344455577777777888779999999999999999998877532211110 00 2456677888899
Q ss_pred CccEEEEeCCC
Q 024982 192 VCPVVVVRYPD 202 (259)
Q Consensus 192 ~~PVlvV~~~~ 202 (259)
++||.+-=++.
T Consensus 87 ~VPValHLDHg 97 (345)
T cd00946 87 GVPVVLHTDHC 97 (345)
T ss_pred CCCEEEECCCC
Confidence 99987665443
No 108
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=51.15 E-value=92 Score=26.37 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=23.6
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
.+.+.++...+--| ....-+..+.+.++|.+|.|+.
T Consensus 174 ~~~~~~~~IeVDGG--I~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 174 GNRRVEKLISIDGS--MTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HhcCCCceEEEECC--CCHHHHHHHHHCCCCEEEEChh
Confidence 34466655444433 4555666777889999999964
No 109
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=50.28 E-value=23 Score=32.26 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCCcEEEEecC
Q 024982 146 MRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
..+.+++.|++.++|+||++.-
T Consensus 28 ~f~~~l~~a~~~~vD~vliAGD 49 (390)
T COG0420 28 AFDELLEIAKEEKVDFVLIAGD 49 (390)
T ss_pred HHHHHHHHHHHccCCEEEEccc
Confidence 4566677777777777777763
No 110
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=50.25 E-value=99 Score=26.05 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=22.3
Q ss_pred cEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 135 PYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 135 ~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
++..++--| ....-+..+.+-++|.+|.|+-
T Consensus 169 ~~~IeVDGG--I~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 169 DILIEVDGG--INLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred CeEEEEeCC--cCHHHHHHHHHcCCCEEEEEEE
Confidence 544444433 5666678888889999999994
No 111
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=50.23 E-value=41 Score=29.47 Aligned_cols=72 Identities=6% Similarity=0.079 Sum_probs=52.2
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
...+.+..+-..-+.......++++.|++.+.-+|+.-+.+.-...+. ..+.+....+.+++++||.+-=++
T Consensus 10 ~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~--~~~~~~~~~~a~~~~VPValHLDH 81 (282)
T TIGR01858 10 DAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGT--EYIVALCSAASTTYNMPLALHLDH 81 (282)
T ss_pred HHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCH--HHHHHHHHHHHHHCCCCEEEECCC
Confidence 334446777777777777999999999999999999887654322111 035678888999999999875443
No 112
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=50.01 E-value=1.2e+02 Score=25.74 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=25.3
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
.+...+.+.++...+--| .-..-+..+.+.++|.+|+|+.
T Consensus 160 r~~~~~~~~~~~IeVDGG--I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 160 KALRERNGLEYLIEVDGS--CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHhcCCCeEEEEECC--CCHHHHHHHHHcCCCEEEEChH
Confidence 333344466655554444 4455556777789999999964
No 113
>PRK04527 argininosuccinate synthase; Provisional
Probab=49.86 E-value=2.1e+02 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.6
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++++|+..|.-.|.-++.++.. .|.+++.+++...
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~g 37 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTG 37 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeC
Confidence 7899999999999999988766 3678999998755
No 114
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=49.56 E-value=90 Score=27.49 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=46.2
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~ 203 (259)
..+.+...+..+..+..+..+-+..+++.+...++|.||.+.- .+.+ ..++.-+..+-.-|+-++|-..-
T Consensus 25 ~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG-DGTv--------~evingl~~~~~~~LgilP~GT~ 94 (301)
T COG1597 25 VEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG-DGTV--------NEVANGLAGTDDPPLGILPGGTA 94 (301)
T ss_pred HHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC-cchH--------HHHHHHHhcCCCCceEEecCCch
Confidence 4455666688888888888745777888888889999998762 3333 33344444443333778886543
No 115
>PRK14057 epimerase; Provisional
Probab=49.35 E-value=1.1e+02 Score=26.44 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=25.3
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
.+...+.+.++...+--| ....-+..+.+.++|.+|.|+.
T Consensus 184 r~~~~~~~~~~~IeVDGG--I~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 184 LCLLGDKREGKIIVIDGS--LTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHhcCCCceEEEECC--CCHHHHHHHHHCCCCEEEEChH
Confidence 333344466555544443 5555666777889999999964
No 116
>PRK05920 aromatic acid decarboxylase; Validated
Probab=48.83 E-value=41 Score=27.98 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=29.0
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
+.+||++++.|+-.+..+++....|.+ .|.+++++
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi 36 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLV 36 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 358999999999999999999888866 47776665
No 117
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=48.82 E-value=2e+02 Score=25.82 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=26.6
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
+||+|++.|.-+|..++..+.+ .|.++..+|+..
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeC
Confidence 4899999999999887765543 467789998864
No 118
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=48.78 E-value=46 Score=25.40 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=37.1
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCCC-c---ccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 145 DMRERLCLEIERLSLSAVIMGSRGFG-A---EKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~~~~-~---~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
...+.|.+.+++++++.||+|-.-+- + -... ..-..+++|-++.++||.++-+.
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~---~v~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTE---RAQKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHH---HHHHHHHHHHHHhCCCEEEEcCC
Confidence 35788999999999999999965321 1 1001 12245667777778999998754
No 119
>PHA02031 putative DnaG-like primase
Probab=48.62 E-value=65 Score=27.95 Aligned_cols=36 Identities=6% Similarity=-0.153 Sum_probs=31.5
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
++|+++.|+....+.|..+|+.+....+.++.++..
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 799999999999999999999999877777766654
No 120
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=48.09 E-value=1.1e+02 Score=22.32 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=28.3
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
++..+++.|.++. ........+.+.+.+++.++|+|.+...
T Consensus 20 la~~l~~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 20 LAAYLRKAGHEVD--ILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 3344444566554 4444445699999999999999999885
No 121
>PRK13337 putative lipid kinase; Reviewed
Probab=47.93 E-value=95 Score=27.14 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=40.3
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh-cCCccEEEEeCCCCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH-HCVCPVVVVRYPDDK 204 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~-~s~~PVlvV~~~~~~ 204 (259)
.+.+.+++++........-+..+.+.+.+.++|+||+.. |.+.+... ...++. ....|+-++|...-+
T Consensus 27 ~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~G-GDGTl~~v--------v~gl~~~~~~~~lgiiP~GT~N 95 (304)
T PRK13337 27 KLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAG-GDGTLNEV--------VNGIAEKENRPKLGIIPVGTTN 95 (304)
T ss_pred HHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEc-CCCHHHHH--------HHHHhhCCCCCcEEEECCcCHh
Confidence 345557777766665544566677777666788766533 35545443 333332 235789999975443
No 122
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=47.73 E-value=53 Score=22.29 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
.++|.++.|.....+.+.+...+.....|-.+.++
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 38999999999999999988888777777666543
No 123
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=47.62 E-value=58 Score=29.48 Aligned_cols=74 Identities=18% Similarity=0.040 Sum_probs=52.2
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-cc--cCCCc------------CCcHHHHHhhcC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KR--GSDGK------------LGSVSDYCVHHC 191 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~--~~~~l------------~gs~~~~ll~~s 191 (259)
....+.+.-+-..-+.......+|++.|++.+..+|+..+.+.... .+ + + . +......+.+++
T Consensus 14 ~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~-~-~~~~~~~~~~~~~~~~~v~~~A~~~ 91 (350)
T PRK09197 14 DRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGV-K-DDGQGAAVLGAIAGAKHVHEVAEHY 91 (350)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccc-c-ccchhhhhhhHHHHHHHHHHHHHHC
Confidence 3344457777777788877999999999999999999887653321 11 1 0 1 345677888999
Q ss_pred CccEEEEeCCC
Q 024982 192 VCPVVVVRYPD 202 (259)
Q Consensus 192 ~~PVlvV~~~~ 202 (259)
++||.+-=++.
T Consensus 92 ~VPValHLDHg 102 (350)
T PRK09197 92 GVPVILHTDHC 102 (350)
T ss_pred CCCEEEECCCC
Confidence 99987654443
No 124
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=47.13 E-value=42 Score=29.44 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=53.7
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc--cCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR--GSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~--~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
.+..++.+.-+-..=+.+-+...+|++.|++.+...||=.+.+.-...+ . .+-.....++++.++||.+--++.
T Consensus 10 l~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~---~~~~~v~~~a~~~~vPV~lHlDHg 85 (286)
T COG0191 10 LDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGAD---SLAHMVKALAEKYGVPVALHLDHG 85 (286)
T ss_pred HHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHH---HHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344445777777777777799999999999999999998876543222 1 233566778888999998876543
No 125
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=47.02 E-value=33 Score=26.44 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHhcCCcEEEEecCCCC-c---ccccCCCcCCcHHHHHhhcC-CccEEEEeCCC
Q 024982 144 HDMRERLCLEIERLSLSAVIMGSRGFG-A---EKRGSDGKLGSVSDYCVHHC-VCPVVVVRYPD 202 (259)
Q Consensus 144 ~~~~~~Il~~a~~~~~dLIVlG~~~~~-~---~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~~ 202 (259)
....+.|.+.+++++++.||+|-.-+. + -... ..-..++.+-.+. ++||.++-+..
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~---~v~~f~~~L~~~~~~ipV~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQAR---RVRKFAEELKKRFPGIPVILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHH---HHHHHHHHHHHHH-TSEEEEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHH---HHHHHHHHHHHhcCCCcEEEECCCh
Confidence 357999999999999999999996321 1 1111 1234556777776 89999998653
No 126
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=46.45 E-value=72 Score=27.75 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=48.3
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (259)
+|-+.+.....+..-++-|-++.++.|.. .+.|+..++.+ ..+....+.+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf-------------------~~e~EttIsk---------- 53 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNF-------------------MSEQETTISK---------- 53 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTG-------------------GGCHHHHHHH----------
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCcc-------------------cchHHHHHHH----------
Confidence 57777777777777777777777777765 78888877542 1111112221
Q ss_pred HHHhhhhhhCCccEEEEEEecC-chHHHHHHHHHhcCCcEEEEecCCC
Q 024982 123 ADLARPLKEAGFPYKIHIVKDH-DMRERLCLEIERLSLSAVIMGSRGF 169 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g~-~~~~~Il~~a~~~~~dLIVlG~~~~ 169 (259)
++....+. .+...++... .-.-+-.+-+++...|++.+....+
T Consensus 54 --I~~lAdDp--~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~ 97 (275)
T PF12683_consen 54 --IVSLADDP--DMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH 97 (275)
T ss_dssp --HHGGGG-T--TEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--
T ss_pred --HHHhccCC--CccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc
Confidence 22333333 4444444432 2234455778888999999977643
No 127
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=46.08 E-value=20 Score=24.60 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=28.8
Q ss_pred CCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCC--hhHHHHHHHHHHHh
Q 024982 10 SDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLS--DESAFAVRWAVHHY 65 (259)
Q Consensus 10 ~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s--~~s~~al~~A~~lA 65 (259)
+..+.||+++++..+.- .+.....+|+|++-||- +-...-+.--.++|
T Consensus 4 aLq~~~P~v~vPr~g~l--------~~l~~~G~Rllva~nGv~lEv~r~WL~~~~~va 53 (72)
T PF09436_consen 4 ALQASFPTVMVPRFGAL--------EPLERPGHRLLVASNGVFLEVRRPWLHVIRPVA 53 (72)
T ss_pred HHHhhCCEeecCCCCCC--------CccccCCcEEEEecCcEEEEEechHHHHhHHhh
Confidence 34567999999865432 11223669999999974 23333444444444
No 128
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=45.97 E-value=1.7e+02 Score=25.64 Aligned_cols=144 Identities=10% Similarity=-0.042 Sum_probs=75.3
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
..||.|-+.++-....++-.+.+-- ..++++.++ +.+. ....+
T Consensus 93 ~~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~~v--isn~----------------------~~~~~------------ 135 (289)
T PRK13010 93 RPKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIVGI--ISNH----------------------PDLQP------------ 135 (289)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHCC-CCCcEEEEE--EECC----------------------hhHHH------------
Confidence 4689999999888888887775532 345666655 4332 11111
Q ss_pred HHHHHhhhhhhCCccEEEEEEe--c-CchHHHHHHHHHhcCCcEEEEecCCCCc----c-----------cccCCCcCCc
Q 024982 121 KAADLARPLKEAGFPYKIHIVK--D-HDMRERLCLEIERLSLSAVIMGSRGFGA----E-----------KRGSDGKLGS 182 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~--g-~~~~~~Il~~a~~~~~dLIVlG~~~~~~----~-----------~~~~~~l~gs 182 (259)
.+++.|+++...-.. . .+....+++..+++++|++|+..-.+-- + ..+++.+-|.
T Consensus 136 -------~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSlLP~f~G~ 208 (289)
T PRK13010 136 -------LAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGA 208 (289)
T ss_pred -------HHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCcccCCCCCCC
Confidence 112236765442111 1 1235578899999999999997532110 0 0112223443
Q ss_pred --HHHHHhhc---CCccEEEEeCCCCCCCCCCeeeecCCCCCCcchhhhccc
Q 024982 183 --VSDYCVHH---CVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRKL 229 (259)
Q Consensus 183 --~~~~ll~~---s~~PVlvV~~~~~~~~~~~l~av~~~~~~~~~~~~~~~~ 229 (259)
.-|.+.+. +.|.|+.|.++-...+--.-..++...+ |..+.+.+++
T Consensus 209 ~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~~~-dt~e~L~~r~ 259 (289)
T PRK13010 209 RPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHS-YSPEDLVAKG 259 (289)
T ss_pred CHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEEEEEcCCC-CCHHHHHHHH
Confidence 33455443 4588888866544332222233333333 3445554444
No 129
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=45.95 E-value=51 Score=28.96 Aligned_cols=72 Identities=6% Similarity=0.068 Sum_probs=51.7
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCc-ccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGA-EKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~-~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+...+.+..+-..-++......++++.|++.+.-+|+..+.+.-. ...- .+.+....+.+++++||.+-=++
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~---~~~~~~~~~a~~~~VPValHLDH 83 (286)
T PRK12738 11 QDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALE---EIYALCSAYSTTYNMPLALHLDH 83 (286)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHH---HHHHHHHHHHHHCCCCEEEECCC
Confidence 333444677777777787799999999999999999986654321 1111 34677888899999999876443
No 130
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=45.77 E-value=70 Score=27.89 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=33.2
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+++.++++.-..+......+.|.+..+++++|+||+-.|
T Consensus 122 ~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 122 KLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred HHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCc
Confidence 33444588888777777778999999999999999999765
No 131
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=45.50 E-value=44 Score=29.18 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=52.4
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
...+.+..+-..-+...+...++++.|++.+..+|+--+.+.-...+. ..+......+.+++++||.+-=++.
T Consensus 7 ~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~--~~~~~~~~~~a~~~~VPV~lHLDH~ 79 (276)
T cd00947 7 KAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGL--ELLVAMVKAAAERASVPVALHLDHG 79 (276)
T ss_pred HHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCH--HHHHHHHHHHHHHCCCCEEEECCCC
Confidence 334447777777777777999999999999999999876654322211 0356677788889999998765443
No 132
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=45.40 E-value=65 Score=28.19 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=33.7
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+++.++++.-..+......+.|.+..+++++|+||+-.|
T Consensus 123 ~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 123 KVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 33444588888888887778999999999999999999665
No 133
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=45.01 E-value=38 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=22.9
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVIL 74 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~l 74 (259)
.++|+++.|+...++.+..+........+.+++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 4899999999999999999998866666665544
No 134
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=44.68 E-value=1.5e+02 Score=25.33 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=38.0
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCC
Q 024982 145 DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~ 203 (259)
+....|.+.+.+.+.|.|.+|.+..-..+.. -.+.+++-.++..||++.|....
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~-----~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENV-----DNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHH-----HHHHHHHHhhcCCCEEEecCChh
Confidence 4567888999999999999988633222221 23455555588899999997643
No 135
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=44.40 E-value=68 Score=28.04 Aligned_cols=73 Identities=11% Similarity=0.019 Sum_probs=52.5
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
....+.+.-+-..-++......++++.|++.+.-+|+..+.+.-..... ..++.......+++++||.+-=++
T Consensus 11 ~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~--~~~~~~~~~~a~~~~vpv~lHlDH 83 (281)
T PRK06806 11 KKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPL--HLIGPLMVAAAKQAKVPVAVHFDH 83 (281)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCCh--HHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344457777777788877999999999999999999887654322111 035677788899999998765433
No 136
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=43.68 E-value=2.2e+02 Score=24.82 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
.++||.|-+.++-....++-.+.+- ...++++.++-.
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~~~i~~vis 119 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GELDAEIALVIS 119 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CCCCcEEEEEEE
Confidence 3479999999998888887776543 334566666533
No 137
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=43.50 E-value=1e+02 Score=29.87 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=44.4
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHH---HHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLE---IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~---a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+..++..|++++..+..-+...+.+.++ +++.+++.+|.+.-....+ ..-+...+.+||+=||.+
T Consensus 429 ~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l-----------~~~~a~~t~~pvi~vp~~ 497 (577)
T PLN02948 429 AAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHL-----------PGMVASMTPLPVIGVPVK 497 (577)
T ss_pred HHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccc-----------hHHHhhccCCCEEEcCCC
Confidence 44455556899888887765555555555 4667889877777543333 334566789999999975
No 138
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=43.18 E-value=97 Score=26.13 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhhhhCCccEEEEEEec----CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCc
Q 024982 118 TATKAADLARPLKEAGFPYKIHIVKD----HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~v~~~v~~g----~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~ 193 (259)
....++.+++.++..|.+|.+..... .+..+.|.+..++++++-|.+-..+.-.+.+ .-..+.....|
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~--------~l~~~~~~~~i 118 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQ--------RLESLAQQLGI 118 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHH--------HHHH----SSS
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHH--------HHHhhhcccCC
Confidence 44456778888888899988877663 2467899999999999999998876654443 35567777889
Q ss_pred cEEEEeCCCC
Q 024982 194 PVVVVRYPDD 203 (259)
Q Consensus 194 PVlvV~~~~~ 203 (259)
|+-+++.+..
T Consensus 119 ~~~~~~~~~F 128 (224)
T PF04244_consen 119 PLEVLEDPHF 128 (224)
T ss_dssp -EEEE--TTS
T ss_pred ceEEeCCCCc
Confidence 9999987643
No 139
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.63 E-value=56 Score=28.64 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=50.6
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..+.+..+-..-+.+.+...++++.|++.+.-+|+.-+.+.-...+. ..+......+.+++++||.+-=++
T Consensus 13 A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~--~~~~~~~~~~A~~~~VPV~lHLDH 83 (284)
T PRK09195 13 AQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGT--EYLLAIVSAAAKQYHHPLALHLDH 83 (284)
T ss_pred HHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCH--HHHHHHHHHHHHHCCCCEEEECCC
Confidence 34446667777777777999999999999999999877643221110 034667888999999998765433
No 140
>PRK00766 hypothetical protein; Provisional
Probab=42.38 E-value=70 Score=26.39 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=43.2
Q ss_pred CccEEEEEEecCchHHHHHHHHHh----cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIER----LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~----~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
|+-+....+.|.|..++|++.++. .+..+|.+..--.+++.= --.+.|-+++..||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv-------vD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV-------VDIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE-------ecHHHHHHHHCCCEEEE
Confidence 677788889999999999999986 345566665543333221 13567788899999999
No 141
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.34 E-value=52 Score=28.86 Aligned_cols=73 Identities=11% Similarity=-0.030 Sum_probs=51.6
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+...+.+.-+-..-+.......++++.|++.+.-+|+-.+.+.-...+. ..+......+.+++.+||.+-=++
T Consensus 11 ~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~--~~~~~~~~~~A~~~~vPV~lHLDH 83 (283)
T PRK07998 11 DRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGY--DYIYEIVKRHADKMDVPVSLHLDH 83 (283)
T ss_pred HHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCH--HHHHHHHHHHHHHCCCCEEEECcC
Confidence 3344447777777777777899999999999999999887653221111 034667778889999998875443
No 142
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=42.19 E-value=1.7e+02 Score=24.12 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=24.9
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
.|+|+-+.|.-+|.-|. .+..+.|.++..+|+..++
T Consensus 4 gk~l~LlSGGiDSpVAa----~lm~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAA----WLMMKRGCEVIALHFDSPP 39 (197)
T ss_dssp -EEEEE-SSCCHHHHHH----HHHHCBT-EEEEEEEE-TT
T ss_pred ceEEEEecCCccHHHHH----HHHHHCCCEEEEEEEECCC
Confidence 68999999988886554 4555679999999998543
No 143
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=42.07 E-value=2e+02 Score=23.93 Aligned_cols=59 Identities=8% Similarity=-0.005 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCC----cccccCCCcCCcHHHHHhhcCCccEEEEeCCCCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFG----AEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~----~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~~ 204 (259)
..+.|++.+...++++||+..-..- ........-+-..-.++.+...|.|+++.+....
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 5667777777789999999953110 0000000001112234455678999999875433
No 144
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=41.80 E-value=2.5e+02 Score=25.79 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.4
Q ss_pred EEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
|+|++.|.-.|..++.++.+. .+.+++.+|+...
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~~~eV~av~~d~G 34 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---GGYEVIAVTADVG 34 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CCCeEEEEEEECC
Confidence 578999999999999888653 3458999999765
No 145
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=41.22 E-value=1.4e+02 Score=26.80 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=37.4
Q ss_pred hhhhhCCccEEEEEEecC---chHHHHHHHHHhcCCcEEE-EecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDH---DMRERLCLEIERLSLSAVI-MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~---~~~~~Il~~a~~~~~dLIV-lG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+.++..++.+...+..+. +..+.+.+.+++.++|.|| +|.- + ...++..+......|++.||--
T Consensus 43 ~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG--s---------~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 43 AALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGG--K---------TLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred HHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCc--H---------HHHHHHHHHHHcCCCEEEeCCc
Confidence 334444665555544443 2455677788889999877 5531 1 1223444444457899999863
No 146
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=41.14 E-value=2.9e+02 Score=25.45 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHH---
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD--- 115 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 115 (259)
+..+||+++..|.-...-++.|-.. +.|.+++.+.+.-...- ++......+.++-...
T Consensus 2 ~~~kkvvLAYSGGLDTSv~i~wL~e---~~~~eVia~tadvGQ~e----------------ed~~~i~eKA~~~Ga~~~~ 62 (403)
T COG0137 2 MKVKKVVLAYSGGLDTSVAIKWLKE---KGGAEVIAVTADVGQPE----------------EDLDAIREKALELGAEEAY 62 (403)
T ss_pred CCCcEEEEEecCCccHHHHHHHHHH---hcCceEEEEEEeCCCCh----------------HHhHHHHHHHHHhCCceEE
Confidence 3569999999999988889988765 45578777776533210 0001111111110000
Q ss_pred --HHHHHHHHHHhhhhhhCCccEEEEEEec-----CchHHHHHHHHHhcCCcEEEEecCCCCc
Q 024982 116 --TFTATKAADLARPLKEAGFPYKIHIVKD-----HDMRERLCLEIERLSLSAVIMGSRGFGA 171 (259)
Q Consensus 116 --~~~~~~~~~~~~~~~~~~v~v~~~v~~g-----~~~~~~Il~~a~~~~~dLIVlG~~~~~~ 171 (259)
....+..+.++......+-.++-...-+ .=.++.+++.|++.+++.|.-|+.|++.
T Consensus 63 viD~reeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGN 125 (403)
T COG0137 63 VIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGN 125 (403)
T ss_pred EeecHHHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCC
Confidence 0011112222222222232223222222 2257889999999999999999998764
No 147
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=39.50 E-value=81 Score=28.56 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
...-++.+++.++|.|.|+-. .....++ .+.+.+++..++||+++-.
T Consensus 36 g~~a~~~~~~~~PDVi~ld~e-mp~mdgl------~~l~~im~~~p~pVimvss 82 (350)
T COG2201 36 GREAIDKVKKLKPDVITLDVE-MPVMDGL------EALRKIMRLRPLPVIMVSS 82 (350)
T ss_pred HHHHHHHHHhcCCCEEEEecc-cccccHH------HHHHHHhcCCCCcEEEEec
Confidence 444558899999999999986 3344444 5678899999999999976
No 148
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=39.46 E-value=1.5e+02 Score=25.27 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=61.7
Q ss_pred EEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 024982 45 GVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAAD 124 (259)
Q Consensus 45 LVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 124 (259)
=+++.+.......++++.++|++.|..|- -|.-+++.. . .+...+ .-...+.....+.+ +-.
T Consensus 33 NIACGfHAGDp~~M~rtV~lA~e~gV~IG-AHPgyPDl~-g--FGRr~m---------~~~~~e~~a~~lYQ-----iGA 94 (252)
T COG1540 33 NIACGFHAGDPLTMRRTVRLAKENGVAIG-AHPGYPDLV-G--FGRREM---------ALSPEELYAQVLYQ-----IGA 94 (252)
T ss_pred hHhhcccCCCHHHHHHHHHHHHHcCCeec-cCCCCcccc-c--cCcccc---------CCCHHHHHHHHHHH-----HHH
Confidence 35677777778889999999998776653 344333211 0 111000 00011111111111 233
Q ss_pred HhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCC
Q 024982 125 LARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGF 169 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~ 169 (259)
+...++.+|..+...--+| ...+++|++.+...+..|+++|..+.
T Consensus 95 L~a~~~a~G~~~~hVKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lags 148 (252)
T COG1540 95 LQAFARAQGGVVQHVKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAGS 148 (252)
T ss_pred HHHHHHhcCCeEEEecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCcH
Confidence 4445556677766654443 34788999999999999999998753
No 149
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=39.12 E-value=1.2e+02 Score=26.29 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=39.7
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc---CCccEEEEeCCCCCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYPDDKD 205 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~---s~~PVlvV~~~~~~~ 205 (259)
+.+.+++++........-+..+.+.+...++|.||+. -|.+.+... ...++.+ .++|+-++|-..-+.
T Consensus 23 l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTi~ev--------~ngl~~~~~~~~~~lgiiP~GTgNd 93 (293)
T TIGR03702 23 LRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAG-GGDGTLREV--------ATALAQIRDDAAPALGLLPLGTAND 93 (293)
T ss_pred HHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEE-cCChHHHHH--------HHHHHhhCCCCCCcEEEEcCCchhH
Confidence 3445777666655443346677777766778876643 345555554 3444432 356899999754443
No 150
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=39.06 E-value=76 Score=28.70 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=53.4
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
+.....+.+..+-..-+.......++++.|++.+.-+|+..+.+.....+. .++......+.++++ +||.+-=++
T Consensus 9 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~--~~~~~~v~~~ae~~~~VPVaLHLDH 84 (347)
T PRK13399 9 LLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGD--AMLRHMVLAAAEMYPDIPICLHQDH 84 (347)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCH--HHHHHHHHHHHHhcCCCcEEEECCC
Confidence 333444457777777788877999999999999999999988754332221 145667788888885 998775433
No 151
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=38.95 E-value=1.3e+02 Score=21.98 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=38.5
Q ss_pred CCccEEEEEEecCchHHHHHHHHHh-cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEE
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIER-LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~-~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlv 197 (259)
.|++++........-...|.+..++ .++|+||--..+....... -.|..-++......+|++.
T Consensus 41 ~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~---~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 41 AGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTD---EDGTALLRLARLYKIPVTT 104 (112)
T ss_pred cCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccC---CChHHHHHHHHHcCCCEEE
Confidence 3777665543322112557888889 9999999865543311112 2366677777777888764
No 152
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=38.93 E-value=73 Score=27.83 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=50.7
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc-cCCCcCCcHHHHHhhcCC-ccEEEEeC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR-GSDGKLGSVSDYCVHHCV-CPVVVVRY 200 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~-~~~~l~gs~~~~ll~~s~-~PVlvV~~ 200 (259)
+...+.+..+-..-++.....+++++.|++.+..+|+.-+.+.-.... . ..+......+.++++ +||.+--.
T Consensus 9 ~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~vpv~lhlD 82 (282)
T TIGR01859 9 QKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGY--KMAVAMVKTLIERMSIVPVALHLD 82 (282)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcH--HHHHHHHHHHHHHCCCCeEEEECC
Confidence 334444777777778887799999999999999999987765432211 0 034566777888888 89877644
No 153
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=38.55 E-value=2e+02 Score=27.35 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=41.1
Q ss_pred HHHHhhhhhhCC-ccEEEEEEecCchHHHHHHHHHh----cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 122 AADLARPLKEAG-FPYKIHIVKDHDMRERLCLEIER----LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 122 ~~~~~~~~~~~~-v~v~~~v~~g~~~~~~Il~~a~~----~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
.+++++.+.+.+ +.++.....=-+-.+.+.+..++ .++|.||+-.+..+.- +..-.+++...+|||
T Consensus 25 ~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a---------~~~i~~~~~l~~PvL 95 (484)
T cd03557 25 SREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPA---------KMWIAGLTALQKPLL 95 (484)
T ss_pred HHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchH---------HHHHHHHHHcCCCEE
Confidence 344555555422 33333222211224555566666 4599999987755543 344566888999999
Q ss_pred EEeCC
Q 024982 197 VVRYP 201 (259)
Q Consensus 197 vV~~~ 201 (259)
+....
T Consensus 96 ~~~~q 100 (484)
T cd03557 96 HLHTQ 100 (484)
T ss_pred EEccC
Confidence 99754
No 154
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=38.30 E-value=88 Score=23.03 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
......+.+++.++..||+-++ -|.++..+.+.-| ||++.+.+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~------------sG~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTE------------SGRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-S------------SSHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECC------------CchHHHHHHhhCCCCeEEEEcCc
Confidence 4566778899999999998874 2678899999866 999999764
No 155
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=38.16 E-value=76 Score=27.94 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=51.0
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-cccCCCcCCcHHHHHhhcC--CccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KRGSDGKLGSVSDYCVHHC--VCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~~~~~l~gs~~~~ll~~s--~~PVlvV~~~~ 202 (259)
+...+.+.-+-..-++......++++.|++.+..+|+.-+.+.-.. .+. ..+......+.+++ .+||.+-=++.
T Consensus 11 ~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~--~~~~~~~~~~a~~~~~~vPV~lHLDH~ 87 (293)
T PRK07315 11 QAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGY--KVCKNLIENLVESMGITVPVAIHLDHG 87 (293)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcH--HHHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 3344446677777788877999999999999999999877654322 111 03456677888888 66887654443
No 156
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.05 E-value=2.2e+02 Score=23.20 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=26.9
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
|+++++.|...|..++.++.+ .|-++..+++..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEec
Confidence 578999999999999888877 3667777776644
No 157
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=38.00 E-value=1.9e+02 Score=23.73 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCcEEEEe----cCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMG----SRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG----~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
.+..++.++..++|++++. -+..+ + + ...+++.++.| ++++++...
T Consensus 36 ~~~~~~~~~~~~pDlvLlDl~~~l~~~~---g----~--~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 36 VDDLAIACDSLRPSVVFINEDCFIHDAS---N----S--QRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHHHhccCCCEEEEeCcccCCCCC---h----H--HHHHHHHHHCCCCeEEEEECC
Confidence 4445567778889999999 33322 1 1 36778877777 999998654
No 158
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=37.94 E-value=2.7e+02 Score=25.56 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=26.0
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
.+.|+-+.+.-+|.- |..++-+.|.++..+|...++
T Consensus 176 Gk~l~LlSGGIDSPV----A~~l~mkRG~~v~~v~f~~~p 211 (383)
T COG0301 176 GKVLLLLSGGIDSPV----AAWLMMKRGVEVIPVHFGNPP 211 (383)
T ss_pred CcEEEEEeCCCChHH----HHHHHHhcCCEEEEEEEcCCC
Confidence 567777777766644 356666789999999996543
No 159
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=37.90 E-value=1.1e+02 Score=25.56 Aligned_cols=34 Identities=15% Similarity=-0.108 Sum_probs=27.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
..+|||+++.||-.+.++.+....|- + ++++.++
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~L~-~-g~~V~Vv 51 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 51 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHhc-C-CCeEEEE
Confidence 45899999999999999999887764 3 7777665
No 160
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.85 E-value=1.1e+02 Score=22.26 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=39.9
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC--ccEEEEe
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV--CPVVVVR 199 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~--~PVlvV~ 199 (259)
+...|..+... ....+.+.+.+.+.+.++|+|.+.......... -.....+.+..+ +++++=-
T Consensus 23 l~~~G~~v~~l--~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~------~~~~~~~~~~~p~~~~ivvGG 87 (125)
T cd02065 23 LRDNGFEVIDL--GVDVPPEEIVEAAKEEDADVVGLSALSTTHMEA------MKLVIEALKELGIDIPVVVGG 87 (125)
T ss_pred HHHCCCEEEEc--CCCCCHHHHHHHHHHcCCCEEEEecchHhHHHH------HHHHHHHHHhcCCCCeEEEeC
Confidence 44446664443 334578889999999999999998764433211 234556667665 5555543
No 161
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.84 E-value=88 Score=28.27 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=47.8
Q ss_pred CccEEEEEEecCc--------hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCC
Q 024982 133 GFPYKIHIVKDHD--------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (259)
Q Consensus 133 ~v~v~~~v~~g~~--------~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~ 203 (259)
+.++...+.=|++ +.+.|++.+++.++|++|.|--=.-+--+. .-|.++..|-++..+|++.-=..+.
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~---acg~v~~aV~e~~~IP~vtaM~~EN 122 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGV---ACGEVAKAVQEKLGIPVVTAMYEEN 122 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHH---HHHHHHHHHHHhhCCCEEEEecccC
Confidence 4565555555533 677899999999999999998633222222 3477888888899999987654443
No 162
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=37.69 E-value=3.6e+02 Score=25.48 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=30.3
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
.-.|+|+.+.|.-+|..|+-++.. .|.++..+|+.+..
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~k----rG~~v~~l~f~~g~ 213 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMR----RGSRVHYCFFNLGG 213 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHH----cCCEEEEEEEecCC
Confidence 347999999999999888766544 48899999997653
No 163
>PRK08576 hypothetical protein; Provisional
Probab=37.46 E-value=3.5e+02 Score=25.34 Aligned_cols=34 Identities=21% Similarity=0.080 Sum_probs=26.3
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+++|++.|..+|..++..+.+... ++.++|+...
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG 269 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTG 269 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCC
Confidence 899999999999998877766432 3777877544
No 164
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=37.32 E-value=2.1e+02 Score=27.08 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=52.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-+...||.+|..-.... +.++++.++.... .+......++.+.++++.+.
T Consensus 11 DLR~~DN~aL~~A~~~~~~~---~~~vfi~~~~~~~------------------------~~~~~~~~Fl~~sL~~L~~~ 63 (461)
T COG0415 11 DLRLTDNAALAAACQSGQPV---IIAVFILDPEQLG------------------------HASPRHAAFLLQSLQALQQS 63 (461)
T ss_pred ccccCChHHHHHHHhcCCCc---eEEEEEechhhcc------------------------ccCHHHHHHHHHHHHHHHHH
Confidence 45556677888887654432 3566666654321 01111122333334555566
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
+.+.|++ ..+..|+ +.+.+.+++++.+++-|+-...-
T Consensus 64 L~~~gi~--L~v~~~~-~~~~l~~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 64 LAELGIP--LLVREGD-PEQVLPELAKQLAATTVFWNRDY 100 (461)
T ss_pred HHHcCCc--eEEEeCC-HHHHHHHHHHHhCcceEEeeeee
Confidence 6655554 5556666 89999999999887777766553
No 165
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=37.21 E-value=2.1e+02 Score=23.78 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
...+.+..++.++|-|++....+...... ..-....++.+.++.||+..-.
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g---~~~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKG---YDLELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCC---CCHHHHHHHHhhCCCCEEEECC
Confidence 34566777888999888876444332222 3345677788888899877653
No 166
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=37.14 E-value=1.6e+02 Score=22.94 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCC---CCCCCCeeeecCCCCCCcch
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD---KDDGEPLVKVKEPEKDDEDD 223 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~---~~~~~~l~av~~~~~~~~~~ 223 (259)
...+.+.+-..+++.+|+....-+..+.. =+...++.-+...||+++++-.+ --.+++..++...+..+..-
T Consensus 16 v~e~ariaygfg~k~lV~tka~g~AAQsG-----Ip~~~kla~k~G~~vlvf~dL~DAlevL~P~v~ll~~~~~~~ek~~ 90 (147)
T COG4080 16 VLEFARIAYGFGAKRLVLTKAKGSAAQSG-----IPEVLKLAFKLGKPVLVFPDLDDALEVLRPDVTLLVGSASEGEKKL 90 (147)
T ss_pred HHHHHHHHcccCccEEEEEecccHhhhhc-----cHHHHHHHHHhCCcEEEehhHHHHHHhcCCceEEEecCcccccccC
Confidence 44555666667788888876544433332 15677888888999999987322 13445556665566667777
Q ss_pred hhhccccceeeeeeeh
Q 024982 224 HVDRKLKGFFFLFFLN 239 (259)
Q Consensus 224 ~~~~~~~~~~~~~~~~ 239 (259)
+.|++++|-..-+|.|
T Consensus 91 dp~e~ie~~vliVf~g 106 (147)
T COG4080 91 DPNEKIEGRVLIVFSG 106 (147)
T ss_pred CccccccceEEEEEec
Confidence 7788888755555443
No 167
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=37.11 E-value=69 Score=27.63 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=31.7
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCC---CCcccccCCCcCCcHHHH-HhhcCCccEEEEeCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG---FGAEKRGSDGKLGSVSDY-CVHHCVCPVVVVRYP 201 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~---~~~~~~~~~~l~gs~~~~-ll~~s~~PVlvV~~~ 201 (259)
+.+.|++++..... ++-...+. ++|.|++|+.. .+.+-. -.|+-.-. +.++..+||+++-+.
T Consensus 154 L~~~gi~v~~i~d~------~~~~~m~~-~vd~VliGad~v~~nG~v~n----k~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 154 LAEAGIPVTLIPDS------AVGYVMPR-DVDKVLIGADAVLANGGVVN----KVGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp HHHTT-EEEEE-GG------GHHHHHHC-TESEEEEE-SEEETTS-EEE----ETTHHHHHHHHHHTT-EEEEE--G
T ss_pred hhhcceeEEEEech------HHHHHHHH-hCCeeEEeeeEEecCCCEee----hhhHHHHHHHHHhhCCCEEEEccc
Confidence 33447776554322 23333444 69999999974 332222 23664444 455688999999653
No 168
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=37.02 E-value=76 Score=26.71 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=31.1
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
.++|.+|.|+....+.|..++..+....|-.+.++.
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~ 189 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIE 189 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 378999999999999999999999988787766653
No 169
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=37.01 E-value=87 Score=28.34 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=52.6
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc-cCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR-GSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~-~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
+...+.+..+-..-++......+|++.|++.+.-+|+..+.+.-...+ - ++......+.++++ +||.+-=++
T Consensus 9 ~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~---~~~~~~~~~ae~~~~VPValHLDH 82 (347)
T TIGR01521 9 DHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAP---FLRHLILAAIEEYPHIPVVMHQDH 82 (347)
T ss_pred HHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHH---HHHHHHHHHHHhCCCCcEEEECCC
Confidence 334445777777778887799999999999999999998876432222 2 45667778888886 999875443
No 170
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=37.00 E-value=89 Score=27.44 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=52.5
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-cccCCCcCCcHHHHHhhcC--CccEEEEeCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KRGSDGKLGSVSDYCVHHC--VCPVVVVRYP 201 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~~~~~l~gs~~~~ll~~s--~~PVlvV~~~ 201 (259)
+.+...+.+..+-..-++......++++.|++.+.-+|+..+.+.-.. .+. ..+........+++ ++||.+-=++
T Consensus 9 iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~--~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (288)
T TIGR00167 9 LLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGL--GAISAMVKAMSEAYPYGVPVALHLDH 86 (288)
T ss_pred HHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCH--HHHHHHHHHHHHhccCCCcEEEECCC
Confidence 333444457777777788878999999999999999999877654322 111 03466777788888 8898765443
No 171
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=36.91 E-value=1.2e+02 Score=27.62 Aligned_cols=76 Identities=14% Similarity=-0.015 Sum_probs=52.3
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-ccc-CC-------C-----cCCcHHHHHhhcCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KRG-SD-------G-----KLGSVSDYCVHHCV 192 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~~-~~-------~-----l~gs~~~~ll~~s~ 192 (259)
+...+.+..+-..-++......++++.|++.+..+|+..+.+.-.. .+. .+ + .+......+.++++
T Consensus 20 ~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~ 99 (357)
T TIGR01520 20 QYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYG 99 (357)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCC
Confidence 3344447777777778877999999999999999999887654221 110 00 0 14557778888999
Q ss_pred ccEEEEeCCC
Q 024982 193 CPVVVVRYPD 202 (259)
Q Consensus 193 ~PVlvV~~~~ 202 (259)
+||.+-=++.
T Consensus 100 VPValHLDHg 109 (357)
T TIGR01520 100 VPVVLHTDHC 109 (357)
T ss_pred CCEEEECCCC
Confidence 9988765443
No 172
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=36.87 E-value=2.1e+02 Score=23.93 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=23.8
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
..+.+..+...+.-| .-..-+..+.+.++|.+|+|+.
T Consensus 161 ~~~~~~~~~I~vdGG--I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 161 IDESGRDIRLEIDGG--VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHhcCCCeeEEEECC--CCHHHHHHHHHcCCCEEEEeHH
Confidence 333455555555444 4444556677889999999974
No 173
>PRK13054 lipid kinase; Reviewed
Probab=36.64 E-value=1.8e+02 Score=25.25 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=40.5
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc---CCccEEEEeCCCCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYPDDK 204 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~---s~~PVlvV~~~~~~ 204 (259)
.+.+.+++++........-+..+.+.+...++|.||+.. |.+.+... ...++.. ..+|+-++|...-+
T Consensus 26 ~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~G-GDGTl~ev--------v~~l~~~~~~~~~~lgiiP~GTgN 96 (300)
T PRK13054 26 LLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGG-GDGTINEV--------ATALAQLEGDARPALGILPLGTAN 96 (300)
T ss_pred HHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEEC-CccHHHHH--------HHHHHhhccCCCCcEEEEeCCcHh
Confidence 344457777665554433366677777667788776543 35555443 4444432 35899999975444
No 174
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.32 E-value=2e+02 Score=26.69 Aligned_cols=41 Identities=7% Similarity=0.119 Sum_probs=23.3
Q ss_pred CccEEEEEEecCchHH---HHHHHHHhcCCcEEEEecCCCCcccc
Q 024982 133 GFPYKIHIVKDHDMRE---RLCLEIERLSLSAVIMGSRGFGAEKR 174 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~---~Il~~a~~~~~dLIVlG~~~~~~~~~ 174 (259)
++++.......+ |+. .=++..++.++|+||+.++||.....
T Consensus 156 ~iP~ygsyte~d-pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~ 199 (483)
T KOG0780|consen 156 RVPFYGSYTEAD-PVKIASEGVDRFKKENFDVIIVDTSGRHKQEA 199 (483)
T ss_pred CCeeEecccccc-hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhH
Confidence 555554444433 333 22344566788888888887765443
No 175
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=36.24 E-value=1.2e+02 Score=24.81 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=30.5
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR 174 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~ 174 (259)
++..|.++ ...-.+-+.+.+++.+++.++|+|.+..........
T Consensus 106 l~~~G~~v--i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~ 149 (201)
T cd02070 106 LEANGFEV--IDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG 149 (201)
T ss_pred HHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH
Confidence 34446665 223334489999999999999999998864444433
No 176
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=35.62 E-value=1.1e+02 Score=21.39 Aligned_cols=61 Identities=20% Similarity=0.080 Sum_probs=34.5
Q ss_pred hCCccEEEEEE-ecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 131 EAGFPYKIHIV-KDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 131 ~~~v~v~~~v~-~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
+.|+.++..+. .++ -...+++..+..++|+||--..+.+... . -.|..-++..-...+|+.
T Consensus 28 ~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~~~~~~~-~---~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 28 EAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLYPLGAQP-H---EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCCcCccee-c---cCcHHHHHHHHHcCCCee
Confidence 34777653321 122 1345889999999999999665312111 1 124455666666666653
No 177
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.09 E-value=2.9e+02 Score=25.22 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=38.3
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeCCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRYPD 202 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~~~ 202 (259)
+.+.|++++..... ....+ .....+|.+++|+.+-..-... -+-.|.-.-.++ ++..+|++++-+..
T Consensus 223 L~~~GIpvtlI~Ds---a~~~~---m~~~~Vd~VivGAD~I~~NG~v-~NKiGTy~lA~~Ak~~~vPfyV~ap~~ 290 (363)
T PRK05772 223 LMEEGIKVTLITDT---AVGLV---MYKDMVNNVMVGADRILRDGHV-FNKIGTFKEAVIAHELGIPFYALAPTS 290 (363)
T ss_pred HHHCCCCEEEEehh---HHHHH---HhhcCCCEEEECccEEecCCCE-eehhhhHHHHHHHHHhCCCEEEEcccc
Confidence 34458886654222 33333 3346799999999753221111 012466554554 66779999996533
No 178
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.07 E-value=2.7e+02 Score=23.32 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
...+++.+++.++|.|++......+.... ..-....++.+.+++||+..-.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g---~~~~~i~~i~~~~~~pvia~GG 201 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKG---YDLELIRAVSSAVNIPVIASGG 201 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCCEEEeCC
Confidence 44566777888999887755443332222 3345667777778888877653
No 179
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.90 E-value=3.7e+02 Score=25.18 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=14.8
Q ss_pred cCCcEEEEecCCCCccccc
Q 024982 157 LSLSAVIMGSRGFGAEKRG 175 (259)
Q Consensus 157 ~~~dLIVlG~~~~~~~~~~ 175 (259)
.++|+|++.+.|++.-...
T Consensus 319 ~~~DvVLIDTaGRs~kd~~ 337 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASE 337 (436)
T ss_pred cCCCEEEEeCccccCcCHH
Confidence 4699999999998764443
No 180
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=34.69 E-value=86 Score=27.89 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=35.6
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 145 DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
.+....++..++ +|+||+|-. |....+++++.=+--.+-+++++||++.|..-.
T Consensus 163 ~~~~~~l~AI~~--ADlIvlgPG--SlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni~ 216 (309)
T cd07044 163 SPSREVLEAIEK--ADNIVIGPG--SLYTSILPNISVPGIREALKKTXAKKVYVSNIX 216 (309)
T ss_pred CCCHHHHHHHHh--CCEEEECCC--cCHHHhhhhcCcHhHHHHHHhcCCCeEEECCCC
Confidence 366677777766 899999974 333334333444444555667899999987653
No 181
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=34.60 E-value=1e+02 Score=27.36 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
+....++..++ +|+||+|-. |....+++++.-+-..+-+++++||++.|..-.
T Consensus 162 a~~~al~AI~~--ADlIvlgPG--SlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~ 214 (310)
T TIGR01826 162 ALREAVEAIRE--ADLIILGPG--SLYTSIIPNLLVPEIAEALRESKAPKVYVCNLM 214 (310)
T ss_pred CCHHHHHHHHh--CCEEEECCC--cCHHHhchhcCchhHHHHHHhCCCCEEEEeCCC
Confidence 56677777765 899999974 333334333443334445567899999987643
No 182
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=34.34 E-value=77 Score=28.55 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=50.9
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC-CCCcccc----------------cCCCcCCcHHHHHhhcCC
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR-GFGAEKR----------------GSDGKLGSVSDYCVHHCV 192 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~-~~~~~~~----------------~~~~l~gs~~~~ll~~s~ 192 (259)
.+.+.-+-..-+.......++++.|++.+...|+.-+. +.....+ . .+........+++.
T Consensus 9 ~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~ 85 (340)
T cd00453 9 KENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAI---SGAHHVHQMAEHYG 85 (340)
T ss_pred HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHH---HHHHHHHHHHHHCC
Confidence 34467777777888778999999999999999998776 2211111 1 24556777888999
Q ss_pred ccEEEEeCCCC
Q 024982 193 CPVVVVRYPDD 203 (259)
Q Consensus 193 ~PVlvV~~~~~ 203 (259)
+||.+--++..
T Consensus 86 VPV~lHLDH~~ 96 (340)
T cd00453 86 VPVILHTDHCA 96 (340)
T ss_pred CCEEEEcCCCC
Confidence 99988655543
No 183
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=34.21 E-value=2.7e+02 Score=23.80 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
....+++.+++.+++-+++-...+.+..+. ..=....++.+.+++||+.--
T Consensus 153 ~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G---~d~~~i~~~~~~~~ipvIasG 203 (258)
T PRK01033 153 DPLELAKEYEALGAGEILLNSIDRDGTMKG---YDLELLKSFRNALKIPLIALG 203 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEccCCCCCcCC---CCHHHHHHHHhhCCCCEEEeC
Confidence 356677888888899777755444333222 222344566667778886654
No 184
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=34.10 E-value=1.6e+02 Score=20.44 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++..++..+|+++++.+-.. ..+. .+.+++-+.. .+|++++...
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~-~~~~------~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPD-GDGL------ELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSS-SBHH------HHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHhcccCceEEEEEeeecc-cccc------ccccccccccccccEEEecCC
Confidence 555668889999999999986443 2332 5666776655 4888888754
No 185
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=33.79 E-value=1.5e+02 Score=27.77 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=43.0
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHh---cC-CcEEEEecCCCCcccccCCCcCCcHHHHHh---hcCCccEEE
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIER---LS-LSAVIMGSRGFGAEKRGSDGKLGSVSDYCV---HHCVCPVVV 197 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~-~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll---~~s~~PVlv 197 (259)
+.+++..-.+-+--..+.|++....|++.++. .+ +|.||+|.-|-|- ..+ ..=..+.|+ ..|.+||+-
T Consensus 156 ~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi-EDL----W~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 156 LSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSI-EDL----WAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchH-HHH----hccChHHHHHHHHhCCCCeEe
Confidence 33333333444455567788888888766643 33 9999999876553 332 222344444 468899987
Q ss_pred EeCC
Q 024982 198 VRYP 201 (259)
Q Consensus 198 V~~~ 201 (259)
-=.+
T Consensus 231 AVGH 234 (440)
T COG1570 231 AVGH 234 (440)
T ss_pred eccc
Confidence 5433
No 186
>PRK02929 L-arabinose isomerase; Provisional
Probab=33.42 E-value=2.1e+02 Score=27.27 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcC----CcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 147 RERLCLEIERLS----LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~----~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
.+.|.+.+++.+ +|.||+-.+..+.- +..-.+++...+|||+...
T Consensus 57 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a---------~~~i~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 57 PDEITAVCREANYDDNCAGVITWMHTFSPA---------KMWIRGLSALQKPLLHLHT 105 (499)
T ss_pred HHHHHHHHHHccccCCCcEEEEccCCCchH---------HHHHHHHHHcCCCEEEEec
Confidence 444556665555 99999988755543 3445668889999999975
No 187
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=33.09 E-value=2e+02 Score=24.28 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=30.5
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
++|.+|-..|...|...+-||.+ .+.+++.+++.+..
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~----~~~ev~alsfdYGQ 38 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKK----EGYEVHALTFDYGQ 38 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHh----cCCEEEEEEeeCCC
Confidence 47888899999999998888755 56899999998775
No 188
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=33.08 E-value=4.3e+02 Score=25.02 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=42.8
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc------CCccEEEEeCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH------CVCPVVVVRYP 201 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~------s~~PVlvV~~~ 201 (259)
.+...+++++........-+..+++.+...++|.||+. -|.+.+... ...++.+ .++|+-++|..
T Consensus 138 ~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~v-GGDGTlnEV--------vNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 138 LLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCV-SGDGILVEV--------VNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred HHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEE-cCCCHHHHH--------HHHHhhCccccccccCceEEecCc
Confidence 34445777777666655456777777766778877653 245555554 2333322 36899999976
Q ss_pred CCCC
Q 024982 202 DDKD 205 (259)
Q Consensus 202 ~~~~ 205 (259)
.-+.
T Consensus 209 TgNd 212 (481)
T PLN02958 209 TGNG 212 (481)
T ss_pred Ccch
Confidence 5443
No 189
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=33.04 E-value=1.1e+02 Score=26.96 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=50.6
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-cccCCCcCCcHHHHHhhcCC--ccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KRGSDGKLGSVSDYCVHHCV--CPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~~~~~l~gs~~~~ll~~s~--~PVlvV~~~ 201 (259)
+...+.+.-+-..-+.......++++.|++.+.-+|+.-+.+.-.. .+. ..+......+.++++ +||.+-=++
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~vPV~lHLDH 86 (286)
T PRK08610 11 IDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGF--YTVVKMVEGLMHDLNITIPVAIHLDH 86 (286)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcH--HHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 3334446677777777777899999999999999999887654332 111 034667777888877 787765433
No 190
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=32.89 E-value=1e+02 Score=22.63 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=29.7
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~ 78 (259)
+|||+++.+.-.+.-+++...+.++..|-++.+-++.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 7899999887777788888888888888877765553
No 191
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=32.62 E-value=3.4e+02 Score=23.71 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=50.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
...||.|-+.++-....|+-.+.+- ...++++.++-...+. .. .+
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~~------------------------~~-~l--------- 132 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHDD------------------------LR-SL--------- 132 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcChh------------------------HH-HH---------
Confidence 3478999999887777777666543 2356777666443221 01 01
Q ss_pred HHHHHHhhhhhhCCccEEEEEE---ecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 120 TKAADLARPLKEAGFPYKIHIV---KDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~---~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+.|+++...-. ...+....+.+..++.++|+||+..-
T Consensus 133 ---------A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK06027 133 ---------VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARY 174 (286)
T ss_pred ---------HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecc
Confidence 1223776544221 11224557888899999999999763
No 192
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=32.54 E-value=4.8e+02 Score=25.42 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHhcCCcEEEEecC
Q 024982 152 LEIERLSLSAVIMGSR 167 (259)
Q Consensus 152 ~~a~~~~~dLIVlG~~ 167 (259)
+++++.++|+||...|
T Consensus 145 ~~a~~~gidvIVtDHH 160 (575)
T PRK11070 145 AHAHALGIPVLVTDHH 160 (575)
T ss_pred HHHHHCCCCEEEECCC
Confidence 4444555555554444
No 193
>PRK13057 putative lipid kinase; Reviewed
Probab=32.44 E-value=1.3e+02 Score=26.03 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=38.6
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~~ 204 (259)
+.+...++++.........-...+.+.+ ..++|+||+.. |.+.+... ...+. .+..|+-++|...-+
T Consensus 20 ~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~G-GDGTv~~v--------~~~l~-~~~~~lgiiP~GT~N 86 (287)
T PRK13057 20 AALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGG-GDGTLNAA--------APALV-ETGLPLGILPLGTAN 86 (287)
T ss_pred HHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEEC-chHHHHHH--------HHHHh-cCCCcEEEECCCCcc
Confidence 4445557776666655443455555553 45678776543 34444443 44443 357899999975444
No 194
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=31.68 E-value=1e+02 Score=27.29 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=38.7
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeCC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRYP 201 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~~ 201 (259)
+..+.+.|++++..... . +--..+..++|.+++|+..-..-.++ -+-.|+-.-.++ ++..+||+++-+.
T Consensus 171 a~~L~~~gI~vtlI~Ds---a---~~~~m~~~~vd~VlvGAd~v~~nG~v-~nk~GT~~lA~~Ak~~~vPv~V~a~s 240 (303)
T TIGR00524 171 AWELMQDGIDVTLITDS---M---AAYFMQKGEIDAVIVGADRIARNGDV-ANKIGTYQLAVLAKEFRIPFFVAAPL 240 (303)
T ss_pred HHHHHHCCCCEEEEChh---H---HHHHccccCCCEEEEcccEEecCCCE-eEhhhHHHHHHHHHHhCCCEEEeccc
Confidence 34445557776654222 2 22333445799999999753221111 002365555444 6678999999653
No 195
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.53 E-value=35 Score=24.23 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=34.1
Q ss_pred hhhhCCccEEEEE-EecCc-hHH---HHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 128 PLKEAGFPYKIHI-VKDHD-MRE---RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 128 ~~~~~~v~v~~~v-~~g~~-~~~---~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
.+.+.|+++...+ ..+.. ... .+.+..++.++||||.-..+.+.... -.|..-++.+-...+|.+
T Consensus 25 ~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~----~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 25 FLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH----TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT----HHHHHHHHHHHHTTSHEE
T ss_pred HHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc----CCcHHHHHHHHHcCCCCc
Confidence 3444588743332 22321 122 39999999999999987764433221 024455566666666653
No 196
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=31.48 E-value=75 Score=24.77 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCC-C---cccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGF-G---AEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~-~---~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
....|.+.+++++++.||+|-.-. . ....- ..-..++.|-++.++||.++-+.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~---~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAE---LARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHH---HHHHHHHHHHHhcCCCEEEEcCc
Confidence 578899999999999999998641 1 11111 22345677777888999888643
No 197
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=31.47 E-value=3.1e+02 Score=23.06 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=14.7
Q ss_pred CCeEEEeecCC-h-hHHHHHHHHHHHhCCCCCEE
Q 024982 41 RRKIGVAVDLS-D-ESAFAVRWAVHHYLRPGDAV 72 (259)
Q Consensus 41 ~~rILVavD~s-~-~s~~al~~A~~lA~~~~a~l 72 (259)
-+.|+.+.... . ...-||.-|+ ++.|+.+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAA---r~TgGR~ 72 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAA---RQTGGRH 72 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHH---HhcCCeE
Confidence 36666665543 2 2234444443 3567765
No 198
>PF13362 Toprim_3: Toprim domain
Probab=31.43 E-value=1.3e+02 Score=21.17 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=37.8
Q ss_pred CCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChh--HHHHHHHHHHHhCCCCCEEEEEE
Q 024982 12 HPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDE--SAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 12 ~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~--s~~al~~A~~lA~~~~a~l~llh 76 (259)
....|++.+.+..--. ....+ ...++|+++.|.... .+.+...+.+.+...|..+.++-
T Consensus 18 ~~~~~~~a~~~~~nl~--~~~~~----~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~ 78 (96)
T PF13362_consen 18 ATGVPVVAALGAGNLK--NVAIP----EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVE 78 (96)
T ss_pred cCCCeEEEEEChhhhh--hhcCC----CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEEC
Confidence 4456777776432111 00111 266999999998887 88888888777776777666653
No 199
>PRK08417 dihydroorotase; Provisional
Probab=31.43 E-value=94 Score=28.28 Aligned_cols=29 Identities=7% Similarity=-0.170 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 52 DESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 52 ~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.....++.+++.+|+..|++++++|+-..
T Consensus 178 ~aE~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 178 IAETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 34557899999999999999999998643
No 200
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=31.40 E-value=2.8e+02 Score=23.88 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=35.7
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~~ 202 (259)
+.+...++++......+..-...+++.+.+.++|.||+. -|.+.+... ...+..... .|+-++|...
T Consensus 26 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~-GGDGTl~~v--------~~~l~~~~~~~~lgiiP~Gt 93 (293)
T TIGR00147 26 MLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAG-GGDGTINEV--------VNALIQLDDIPALGILPLGT 93 (293)
T ss_pred HHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEE-CCCChHHHH--------HHHHhcCCCCCcEEEEcCcC
Confidence 344555777766555554223445555555677877653 234444443 444444323 4677788643
No 201
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=31.34 E-value=3.7e+02 Score=23.78 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=37.6
Q ss_pred CccEEEEEEecC---chHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCc-----HHHHHhhcCCccEEEEe
Q 024982 133 GFPYKIHIVKDH---DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGS-----VSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 133 ~v~v~~~v~~g~---~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs-----~~~~ll~~s~~PVlvV~ 199 (259)
++.+..++..|. +....+++.+++.++|.|.+-.+.+. .+ ..|. ...++-+..++||+..-
T Consensus 133 ~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~--~~----y~g~~~~~~~i~~ik~~~~iPVi~nG 201 (312)
T PRK10550 133 HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE--DG----YRAEHINWQAIGEIRQRLTIPVIANG 201 (312)
T ss_pred CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc--cC----CCCCcccHHHHHHHHhhcCCcEEEeC
Confidence 467777777663 23567888889999999999554321 22 2333 23445555667776654
No 202
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=31.32 E-value=1e+02 Score=27.59 Aligned_cols=74 Identities=7% Similarity=-0.015 Sum_probs=48.8
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc---cCCCcCCcHHHHHhhcC--CccEEEEeC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR---GSDGKLGSVSDYCVHHC--VCPVVVVRY 200 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~---~~~~l~gs~~~~ll~~s--~~PVlvV~~ 200 (259)
.+...+.+..+-..-++......++++.|++.+.-+|+-.+.+.....+ + -.+........+++ ++||.+-=+
T Consensus 16 L~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~--~~~~~~~~~~a~~a~~~VPV~lHLD 93 (321)
T PRK07084 16 FAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLL--RYMAQGAVEYAKELGCPIPIVLHLD 93 (321)
T ss_pred HHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHH--HHHHHHHHHHHHHcCCCCcEEEECC
Confidence 3344445777777778887899999999999999999988765432212 1 01233345566666 688876543
Q ss_pred C
Q 024982 201 P 201 (259)
Q Consensus 201 ~ 201 (259)
+
T Consensus 94 H 94 (321)
T PRK07084 94 H 94 (321)
T ss_pred C
Confidence 3
No 203
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=31.30 E-value=4e+02 Score=24.16 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=65.8
Q ss_pred CCeEEEeecCC--hhHHHHHHHHHHHhCCCC---C-EEEEEEEec--CCcccCCCCCCC-CccccccchhhhHHHHHHHH
Q 024982 41 RRKIGVAVDLS--DESAFAVRWAVHHYLRPG---D-AVILVHVSP--TSVLFGADWGPL-PQQQINSENASNIEHQKQLE 111 (259)
Q Consensus 41 ~~rILVavD~s--~~s~~al~~A~~lA~~~~---a-~l~llhV~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 111 (259)
.+|++|.+.+. +....++++|.+++.... . -+.++.+.- +... ..|-.+ ..+......+ -++..+.++
T Consensus 51 d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs--~g~kGl~~DP~ldgs~~-i~~GL~~~R 127 (349)
T PRK09261 51 DDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTT--VGWKGLINDPDLDGSFD-INDGLRIAR 127 (349)
T ss_pred CCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCC--CCCcCCCcCcCcccccc-HHHHHHHHH
Confidence 46788888765 345678889888876422 2 234555542 2222 222222 1111111100 112222222
Q ss_pred HHHHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC
Q 024982 112 DDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC 191 (259)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s 191 (259)
++.-...+.|+.+-+++..-..+ ++..+. +|++.+|++.... -.-.+++...
T Consensus 128 ------------~ll~~~~e~GlpvatE~ld~~~~-----~y~~dl-vs~~~IGARt~es----------q~hr~~asg~ 179 (349)
T PRK09261 128 ------------KLLLDINELGLPAATEFLDPITP-----QYIADL-ISWGAIGARTTES----------QVHRELASGL 179 (349)
T ss_pred ------------HHHHHHHHhCCCeEEEecccccH-----HHHHhh-cceeeeccchhcC----------HHHHHHhcCC
Confidence 22222344599999999887643 444444 7899999974321 1234566667
Q ss_pred CccEEE
Q 024982 192 VCPVVV 197 (259)
Q Consensus 192 ~~PVlv 197 (259)
++||.+
T Consensus 180 ~~PVg~ 185 (349)
T PRK09261 180 SCPVGF 185 (349)
T ss_pred CCeeEe
Confidence 788877
No 204
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.48 E-value=2.7e+02 Score=21.83 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 53 ESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 53 ~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.+..|++.+++.....+.++.++.+...
T Consensus 3 ~aA~Al~eal~~~~~~~~~v~v~D~~~~ 30 (169)
T PF06925_consen 3 SAARALAEALERRRGPDAEVEVVDFLEE 30 (169)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEehHHh
Confidence 4667888887765446778887777654
No 205
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=29.82 E-value=92 Score=28.82 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCCcEEEEecC
Q 024982 146 MRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
..+.|++.|.+.++|+|+++.-
T Consensus 30 ~f~eil~~a~~~~vD~VLiaGD 51 (405)
T TIGR00583 30 TFEEVLQIAKEQDVDMILLGGD 51 (405)
T ss_pred HHHHHHHHHHHcCCCEEEECCc
Confidence 3566777777777788777763
No 206
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=29.51 E-value=1.5e+02 Score=19.70 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=26.1
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVIL 74 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~l 74 (259)
.++|.++.|.......+.+.+....+..+..+.+
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i 76 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALELLLALGGRVRV 76 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3899999999999888888887777655554443
No 207
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.40 E-value=1.5e+02 Score=25.54 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=51.5
Q ss_pred EEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCCCCCCCCeeee
Q 024982 139 HIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKV 213 (259)
Q Consensus 139 ~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~~~~~~~l~av 213 (259)
.+..|.--.+++..+.+++++|+||=.+|.... ++ .-++-++.+...+|.+-...+.|...+.-...|
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa--~i-----S~Na~~aake~gipy~r~eRP~~~~~gd~~~~V 114 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAA--RI-----SQNAARAAKETGIPYLRLERPPWAPNGDNWIEV 114 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHH--HH-----HHHHHHHHHHhCCcEEEEECCccccCCCceEEe
Confidence 344454468999999999999999999986542 33 557888889999999999888887744444444
No 208
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=29.32 E-value=2.2e+02 Score=26.55 Aligned_cols=92 Identities=7% Similarity=-0.086 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCc---ccccC-----CCcC
Q 024982 109 QLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGA---EKRGS-----DGKL 180 (259)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~---~~~~~-----~~l~ 180 (259)
.+++.....+.+.++++.+.+...|..+...- ..++..+.|.+.+++++...|++|.+-... +...+ +-.-
T Consensus 40 ~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~-t~~eA~~~v~~i~~~~~~~~vv~~kS~~~eeigl~~~L~~~g~~~~e 118 (432)
T TIGR00273 40 EIKLKVLENLDFYLDQLKENVTQRGGHVYYAK-TAEEARKIIGKVAQEKNGKKVVKSKSMVSEEIGLNEVLEKIGIEVWE 118 (432)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHHHHHhCCCEEEEcCchHHHHhCCHHHHHhCCCeeee
Confidence 33344444455556666666666565543332 224577889999999999999998542111 11100 0022
Q ss_pred CcHHHHHhhcCC-ccEEEEeCC
Q 024982 181 GSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 181 gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
+...+++++-.. -|.++|-+.
T Consensus 119 tdlge~i~ql~~~~pshiv~Pa 140 (432)
T TIGR00273 119 TDLGELILQLDGDPPSHIVVPA 140 (432)
T ss_pred CccHHHHhhhccCCCceeeecc
Confidence 344566655444 777777553
No 209
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=29.19 E-value=2.7e+02 Score=23.99 Aligned_cols=81 Identities=15% Similarity=-0.021 Sum_probs=51.3
Q ss_pred CCCCCCeEEEeecCC-hhHHHHHHHHHHHhCCCCC-EEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHH
Q 024982 37 TSLARRKIGVAVDLS-DESAFAVRWAVHHYLRPGD-AVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDF 114 (259)
Q Consensus 37 ~~~~~~rILVavD~s-~~s~~al~~A~~lA~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (259)
.|...++.+-++.+. ...+.-++.|+..|...|. .++++-+..+.+.. .......+
T Consensus 65 Dw~~gErg~aalp~r~~~fr~~v~~a~~ya~aLg~~~vh~mag~~p~~~~------------------~~~~~~t~---- 122 (260)
T COG3622 65 DWAAGERGIAALPGREEEFRLGVALAIEYATALGCKQVHCLAGIPPEGVD------------------TEAMWATF---- 122 (260)
T ss_pred chhhhhcchhcCCCchHHHHhHHHHHHHHHHHhCCCceeeeecCCCCCcc------------------HHHHHHHH----
Confidence 455667888888764 4556778888888888884 68888887764321 12222222
Q ss_pred HHHHHHHHHHHhhhhhhCCccEEEEEEec
Q 024982 115 DTFTATKAADLARPLKEAGFPYKIHIVKD 143 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~v~v~~~v~~g 143 (259)
.+.++..++.+...|+.+..+-+..
T Consensus 123 ----venLr~aAd~l~~~gi~~liEplN~ 147 (260)
T COG3622 123 ----VENLRYAADLLAAEGIRLLIEPLNL 147 (260)
T ss_pred ----HHHHHHHHHHHHhcCCEEEEecCCC
Confidence 2234556677777788887766554
No 210
>PRK11914 diacylglycerol kinase; Reviewed
Probab=29.11 E-value=1.5e+02 Score=25.86 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=40.1
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~~ 204 (259)
+.+.++++.........-...+.+.+.+.++|+||+.. |.+.+... ...+. ....|+-++|...-+
T Consensus 35 l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~G-GDGTi~ev--------v~~l~-~~~~~lgiiP~GT~N 100 (306)
T PRK11914 35 LHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVG-GDGVISNA--------LQVLA-GTDIPLGIIPAGTGN 100 (306)
T ss_pred HHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEEC-CchHHHHH--------hHHhc-cCCCcEEEEeCCCcc
Confidence 34447776655554433467777777777889766533 45555554 22332 457899999975444
No 211
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=29.00 E-value=3.3e+02 Score=23.07 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
...+++..++.++|.|++-...+.+.... ..-....++.+.+++||+..-.
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g---~~~~~~~~i~~~~~ipvia~GG 207 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSG---YDLELTKAVSEAVKIPVIASGG 207 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCC---CCHHHHHHHHHhCCCCEEEeCC
Confidence 44566777888999888744333222121 3335667788888899887754
No 212
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.86 E-value=2.9e+02 Score=21.80 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=31.8
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
..++|+|-+....+.-.++--|..|+. .|..++++.+.+..
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~-~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLAN-RGYNVTVYLVGPPE 64 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHH-TTCEEEEEEEESSS
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHH-CCCeEEEEEEeccc
Confidence 458999999999999999999988866 68888886665544
No 213
>PRK00211 sulfur relay protein TusC; Validated
Probab=28.30 E-value=1.6e+02 Score=21.97 Aligned_cols=38 Identities=3% Similarity=-0.000 Sum_probs=26.2
Q ss_pred CCeEEEeecCC----hhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 41 RRKIGVAVDLS----DESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 41 ~~rILVavD~s----~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
++||++.+..+ +.+..+++.|+..+.. +.++.++...+
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~-~~~v~vff~~D 42 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAF-TEDIGVFFIDD 42 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcc-cCCeeEEEEhh
Confidence 36788888755 4567778777777664 44788877654
No 214
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=28.15 E-value=3.4e+02 Score=22.33 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
...+++..++.+++-+++....+.+..+. ..-....++.+.+++||+.--
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g---~~~~~i~~i~~~~~ipvi~~G 197 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSG---PNFELYKELAAATGIPVIASG 197 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCC---CCHHHHHHHHHhcCCCEEEec
Confidence 34566777778899888865544333222 223455667777788876643
No 215
>PRK13055 putative lipid kinase; Reviewed
Probab=28.09 E-value=3.3e+02 Score=24.16 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=38.6
Q ss_pred hhhhhhCCccEEEEEEe-cCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc-CCccEEEEeCCC
Q 024982 126 ARPLKEAGFPYKIHIVK-DHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPD 202 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~-g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~-s~~PVlvV~~~~ 202 (259)
.+.+.+.+++++..... ...-.+.+.+.+...++|.||+.. |.+.+... ...++.. ...|+-++|...
T Consensus 26 ~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~G-GDGTl~ev--------vngl~~~~~~~~LgiiP~GT 95 (334)
T PRK13055 26 LDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAG-GDGTINEV--------VNGIAPLEKRPKMAIIPAGT 95 (334)
T ss_pred HHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEEC-CCCHHHHH--------HHHHhhcCCCCcEEEECCCc
Confidence 34445557777665444 222356677767667788777543 34545443 3334332 346788888643
No 216
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.96 E-value=2.4e+02 Score=20.51 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=24.1
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEE
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAV 72 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l 72 (259)
|||++.-+++...-.+.....+.+..|-++
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V 30 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEV 30 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEE
Confidence 477777778888888888888888888776
No 217
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=27.94 E-value=2.2e+02 Score=21.59 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCc
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~ 193 (259)
..+.+.+...+ +|.||+++.-... -+.+.-..++.++.+
T Consensus 60 ~~~~~~~~l~~--aD~iI~~sP~y~~-------~~s~~lK~~lD~~~~ 98 (152)
T PF03358_consen 60 DVQELYDKLKE--ADGIIFASPVYNG-------SVSGQLKNFLDRLSC 98 (152)
T ss_dssp HHHHHHHHHHH--SSEEEEEEEEBTT-------BE-HHHHHHHHTHHH
T ss_pred HHHHHHhceec--CCeEEEeecEEcC-------cCChhhhHHHHHhcc
Confidence 44566666655 8999999974322 224455566666554
No 218
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=27.53 E-value=4.4e+02 Score=23.37 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=36.4
Q ss_pred CccEEEEEEecCc----hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHH----HHHhhcCCccEEEEeC
Q 024982 133 GFPYKIHIVKDHD----MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVS----DYCVHHCVCPVVVVRY 200 (259)
Q Consensus 133 ~v~v~~~v~~g~~----~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~----~~ll~~s~~PVlvV~~ 200 (259)
++.+..++..|-+ -...+.+.+++.++|.|.+-.+.+.. . ..|... .++.+++++||+..-.
T Consensus 133 d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~---~---~~G~a~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 133 DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRAC---L---FNGEAEYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCcccc---c---cCCCcChHHHHHHHHhcCCcEEEeCC
Confidence 5567777766532 24467777888899999875543221 1 223233 3445556788776543
No 219
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=27.26 E-value=1.5e+02 Score=26.27 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=34.6
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 145 DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+....++..++ +|+||+|-. |.+..+++.+.-+--.+-+++++||++.|..-
T Consensus 164 ~~~~~a~~AI~~--AD~Iv~gPG--SlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N~ 216 (308)
T cd07187 164 KANPEALEAIEE--ADLIVYGPG--SLYTSILPNLLVKGIAEAIRASKAPKVYICNL 216 (308)
T ss_pred CCCHHHHHHHHh--CCEEEECCC--ccHHHhhhhcCchhHHHHHHhCCCCEEEEecC
Confidence 466677777766 899999874 33333333344344444557888999888754
No 220
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.20 E-value=2.3e+02 Score=22.44 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=30.8
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 145 DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
+-.+.|++.+++.++|+|++|--.. .+.. ...+..++.+.+|++.
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~P--kQE~-------~~~~~~~~l~~~v~i~ 132 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGAP--KQER-------WIARHRQRLPAGVIIG 132 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCC--HHHH-------HHHHHHHHCCCCEEEE
Confidence 4688999999999999999987422 1221 2555666667665554
No 221
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=27.18 E-value=2e+02 Score=23.94 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=44.4
Q ss_pred CCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcc
Q 024982 12 HPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVL 83 (259)
Q Consensus 12 ~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~ 83 (259)
|-..|+.+++..++. +... .|-...-|++++.+|=++...+..+ ..+++.++.|..+...+...+
T Consensus 63 s~G~~a~fv~p~ea~-hgdl-----g~i~~~DvviaiS~SGeT~el~~~~-~~aK~~g~~liaiT~~~~SsL 127 (202)
T COG0794 63 STGTPAFFVGPAEAL-HGDL-----GMITPGDVVIAISGSGETKELLNLA-PKAKRLGAKLIAITSNPDSSL 127 (202)
T ss_pred ccCCceEEecCchhc-cCCc-----cCCCCCCEEEEEeCCCcHHHHHHHH-HHHHHcCCcEEEEeCCCCChH
Confidence 456788888733222 1111 1335578999999997777766655 677889999999988776643
No 222
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=27.15 E-value=1.6e+02 Score=26.25 Aligned_cols=73 Identities=10% Similarity=-0.037 Sum_probs=51.3
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
....+.+..+-..-++......++++.|++.+.-+|+..+.+.-...+. ..+......+.++++ +||.+-=++
T Consensus 10 ~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~--~~~~~~~~~~a~~~~~VPValHLDH 83 (307)
T PRK05835 10 LKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGI--DMAVGMVKIMCERYPHIPVALHLDH 83 (307)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCCh--HHHHHHHHHHHHhcCCCeEEEECCC
Confidence 3344447777777788888999999999999999999877654221111 034566777788886 999875443
No 223
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=27.15 E-value=1.7e+02 Score=25.74 Aligned_cols=72 Identities=8% Similarity=0.032 Sum_probs=49.8
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-cccCCCcCCcHHHHHhhcCC--ccEEEEeC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KRGSDGKLGSVSDYCVHHCV--CPVVVVRY 200 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~~~~~l~gs~~~~ll~~s~--~PVlvV~~ 200 (259)
+...+.+..+-..-+.......++++.|++.+.-+|+-.+.+.-.. .+. ..+......+.++.. +||.+-=+
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~VPV~lHLD 85 (285)
T PRK07709 11 NKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGF--KTVVAMVKALIEEMNITVPVAIHLD 85 (285)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCH--HHHHHHHHHHHHHcCCCCcEEEECC
Confidence 3344447777777777777899999999999999999887654322 110 034567888888876 68766543
No 224
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.99 E-value=2.7e+02 Score=23.65 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 024982 54 SAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAG 133 (259)
Q Consensus 54 s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 133 (259)
+..-++.++++|+..|++..++|.-.... . ..++..+. ..+.++++++.+++.|
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~---~---------------~~~~~~~~--------~~~~l~~l~~~a~~~g 136 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLG---Q---------------SKEEGLKR--------VIEALNELIDKAETKG 136 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCC---C---------------CHHHHHHH--------HHHHHHHHHHhccCCC
Confidence 44557899999999999977665432110 0 01222222 2223555677777778
Q ss_pred ccEEEEEEecC-----chHHHHHHHHHhcC
Q 024982 134 FPYKIHIVKDH-----DMRERLCLEIERLS 158 (259)
Q Consensus 134 v~v~~~v~~g~-----~~~~~Il~~a~~~~ 158 (259)
+.+-.+...+. +-.+...+.+++.+
T Consensus 137 i~l~lEn~~~~~~~~~~t~~~~~~li~~v~ 166 (279)
T cd00019 137 VVIALETMAGQGNEIGSSFEELKEIIDLIK 166 (279)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 88777765544 12355556666543
No 225
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.91 E-value=3.3e+02 Score=24.45 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=38.5
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRY 200 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~ 200 (259)
..+.+.|++++.... . ....+ .+..++|.+++|+.+-..-... -+-.|.-.-.++ ++..+|++++-+
T Consensus 190 ~eL~~~GI~vtlI~D--s-a~~~~---M~~~~Vd~VivGAd~I~aNG~v-~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 190 WELAQEGIDHAIIAD--N-AAGYF---MRKKEIDLVIVGADRIASNGDF-ANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHCCCCEEEEcc--c-HHHHH---hhhcCCCEEEECccEEecCCCE-eehhhHHHHHHHHHHcCCCEEEecc
Confidence 344555887665422 2 33333 3456799999999853221111 002466555555 567799999854
No 226
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.84 E-value=2.5e+02 Score=24.19 Aligned_cols=66 Identities=15% Similarity=0.035 Sum_probs=41.1
Q ss_pred HhhhhhhCCccEEEEEEecCchHH--HHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRE--RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~--~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
+++.+...|+++......|+++.+ ..++.+.+. +|+||...-=-..-.. -|.+.+.+.+..|+.+-
T Consensus 26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGPT~DD-------iT~e~vAka~g~~lv~~ 93 (255)
T COG1058 26 LADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGGLGPTHDD-------LTAEAVAKALGRPLVLD 93 (255)
T ss_pred HHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCCCccH-------hHHHHHHHHhCCCcccC
Confidence 455666679999999999986432 233445555 9999984421111111 25666677777777663
No 227
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=26.73 E-value=3.5e+02 Score=22.42 Aligned_cols=42 Identities=7% Similarity=0.065 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 148 ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+++++..++.++|++|+..-+ + + ....+++..+..++=+++.
T Consensus 68 ~~~~~~l~~~~~Dliv~agy~-----~----i---l~~~~l~~~~~~~iNiHpS 109 (207)
T PLN02331 68 DELVDALRGAGVDFVLLAGYL-----K----L---IPVELVRAYPRSILNIHPA 109 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCcc-----h----h---CCHHHHhhCCCCEEEEeCc
Confidence 456666777777777775421 1 1 2345566666566656553
No 228
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.29 E-value=2.1e+02 Score=20.27 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=36.2
Q ss_pred hhhCCccEEEEEEecCchHH--HHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 129 LKEAGFPYKIHIVKDHDMRE--RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~--~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
+.+.|.....+-..++.-.. .|-+.. .++|+||+=+.--+.-. --.+.+..++..+|++..+...
T Consensus 19 ~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~~vsH~~-------~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 19 LEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTDYVSHNA-------MWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred HHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeCCcChHH-------HHHHHHHHHHcCCcEEEECCCC
Confidence 33347666655112221222 244444 45899999876332211 1246677778889999998543
No 229
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=26.18 E-value=2.9e+02 Score=23.93 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=38.9
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
++.+-..+-.+-.-.-.+.+.+++.++|-+++-.........- -+-.--..|+..+++||++...
T Consensus 69 ~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~---~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 69 RVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEAPQE---GLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHhcCCCCEEEEeC
Confidence 4555554432222334456888999999999977544322111 1122345677788999999964
No 230
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.17 E-value=3e+02 Score=21.06 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=28.1
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
..+||+++=+.+.....+.....+.+..|-+++-+=
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG 38 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG 38 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC
Confidence 467899988888888888888888887777766553
No 231
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.16 E-value=3e+02 Score=24.56 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=27.1
Q ss_pred CccEEEEEEecCchH----HHHHHHHHhcCCcEEEEecC
Q 024982 133 GFPYKIHIVKDHDMR----ERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~----~~Il~~a~~~~~dLIVlG~~ 167 (259)
++.++++++.|.+.. ..+.+.+++.+++.+.+=.+
T Consensus 136 ~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgR 174 (323)
T COG0042 136 DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGR 174 (323)
T ss_pred CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecc
Confidence 488888888885433 46889999999999988543
No 232
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=26.15 E-value=5e+02 Score=23.54 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred CCeEEEeecCCh--hHHHHHHHHHHHhCCC---CCE-EEEEEEecCCcccCCCCCCCC-ccccccchhhhHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSD--ESAFAVRWAVHHYLRP---GDA-VILVHVSPTSVLFGADWGPLP-QQQINSENASNIEHQKQLEDD 113 (259)
Q Consensus 41 ~~rILVavD~s~--~s~~al~~A~~lA~~~---~a~-l~llhV~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 113 (259)
.+|++|.+.+.. ....+++||.++++.. ... +.++.+.-...-....|..+- .+.....-+ -++..+.++
T Consensus 46 d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~-i~~GL~~~R-- 122 (344)
T TIGR00034 46 DDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFR-INHGLRIAR-- 122 (344)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCC-HHHHHHHHH--
Confidence 478888887653 4567888888877632 222 345555422211112122111 111000000 122222222
Q ss_pred HHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCc
Q 024982 114 FDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~ 193 (259)
++.-...+.|+.+-+++..-.. .+-+.+. ++...+|+|... .. +-+++....+|
T Consensus 123 ----------~ll~~i~~~GlPvatE~ld~~~-~~y~~Dl-----isw~aIGARt~e---sq-------~hRelaSgl~~ 176 (344)
T TIGR00034 123 ----------KLLLDLVNLGLPIAGEFLDMIS-PQYLADL-----FSWGAIGARTTE---SQ-------VHRELASGLSC 176 (344)
T ss_pred ----------HHHHHHHHhCCCeEEEecCcCc-HHHHHHH-----HhhccccCcccc---CH-------HHHHHHhCCCC
Confidence 2222234459999999888653 3333222 344477876321 11 22566666778
Q ss_pred cEEEEe
Q 024982 194 PVVVVR 199 (259)
Q Consensus 194 PVlvV~ 199 (259)
||.+=+
T Consensus 177 PVgfKn 182 (344)
T TIGR00034 177 PVGFKN 182 (344)
T ss_pred ceEecC
Confidence 887643
No 233
>COG1162 Predicted GTPases [General function prediction only]
Probab=26.13 E-value=4.7e+02 Score=23.22 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=49.8
Q ss_pred EeecCChhHHHHHHHHHHHhCCCCCE-EEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 024982 46 VAVDLSDESAFAVRWAVHHYLRPGDA-VILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAAD 124 (259)
Q Consensus 46 VavD~s~~s~~al~~A~~lA~~~~a~-l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 124 (259)
|..-..+-+...|++.+-+|...|.+ +.++.=.+... .+. ... ++ ..
T Consensus 87 vs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~--------------------~~~-~~~-~~-~~--------- 134 (301)
T COG1162 87 VSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLD--------------------DEE-AAV-KE-LL--------- 134 (301)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCc--------------------chH-HHH-HH-HH---------
Confidence 33344556788899999999888874 55554443321 111 111 11 11
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG 170 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~ 170 (259)
..+..-|..+-.......+..+.+.+..+.. ..+++|.+|-+
T Consensus 135 --~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~--~svl~GqSGVG 176 (301)
T COG1162 135 --REYEDIGYPVLFVSAKNGDGLEELAELLAGK--ITVLLGQSGVG 176 (301)
T ss_pred --HHHHhCCeeEEEecCcCcccHHHHHHHhcCC--eEEEECCCCCc
Confidence 1112125554444444555777787777664 88889998754
No 234
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=26.06 E-value=4.8e+02 Score=23.39 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=25.2
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
||+|++.|.-+|..++..+.+ .+.+++.+|+..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEec
Confidence 589999999999887665544 466888888754
No 235
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=26.02 E-value=3e+02 Score=24.20 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=33.0
Q ss_pred CccEEEEEEecCc--h--HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh----cCCccEEE
Q 024982 133 GFPYKIHIVKDHD--M--RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH----HCVCPVVV 197 (259)
Q Consensus 133 ~v~v~~~v~~g~~--~--~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~----~s~~PVlv 197 (259)
+++++.+++.|.+ . ...+++.+++.+++.|.+-.|.+ -++ .-|...|..+. ..++||+.
T Consensus 122 ~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~--~q~----~~~~a~w~~i~~i~~~~~ipvi~ 188 (309)
T PF01207_consen 122 PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTR--KQR----YKGPADWEAIAEIKEALPIPVIA 188 (309)
T ss_dssp SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-T--TCC----CTS---HHHHHHCHHC-TSEEEE
T ss_pred ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCch--hhc----CCcccchHHHHHHhhcccceeEE
Confidence 5777777777654 2 46677888889999998866522 222 33555665444 45566654
No 236
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=25.95 E-value=2.9e+02 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 53 ESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 53 ~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
....++++++.+++..+.++++.|+....
T Consensus 225 ~e~~av~~~~~~a~~~g~r~~i~H~ss~~ 253 (415)
T cd01297 225 SILEALDELLRLGRETGRPVHISHLKSAG 253 (415)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEEEecCC
Confidence 45678889999998889999999987553
No 237
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=25.94 E-value=3e+02 Score=20.93 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=24.9
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
.++|++.|...|..++.++.+.- +.++..+|+..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeCC
Confidence 58999999999998888776532 22667777753
No 238
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.88 E-value=1.8e+02 Score=20.75 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=29.7
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
.+|||+++...-.+...+....+.++..|-++.+-++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 3789999987777777888888889888888776655
No 239
>PRK00861 putative lipid kinase; Reviewed
Probab=25.85 E-value=2.6e+02 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=38.9
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCCC
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~~ 204 (259)
+.+++........-+..+.+.+...++|+||+. -|.+.+... ...+. ...+|+-++|...-+
T Consensus 32 ~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTl~ev--------v~~l~-~~~~~lgviP~GTgN 93 (300)
T PRK00861 32 EMDLDIYLTTPEIGADQLAQEAIERGAELIIAS-GGDGTLSAV--------AGALI-GTDIPLGIIPRGTAN 93 (300)
T ss_pred cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEE-CChHHHHHH--------HHHHh-cCCCcEEEEcCCchh
Confidence 355666555555557778888877888987653 345555554 34443 346889999975443
No 240
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.75 E-value=2.8e+02 Score=21.88 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEEEe--cCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024982 54 SAFAVRWAVHHYLRPGDAVILVHVS--PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKE 131 (259)
Q Consensus 54 s~~al~~A~~lA~~~~a~l~llhV~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 131 (259)
+..-++.++.+|+..|++...+|.. ..... . ..++..+.+.+ .++++++.+++
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~--~---------------~~~~~~~~~~~--------~l~~l~~~a~~ 123 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPE--D---------------DTEENWERLAE--------NLRELAEIAEE 123 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTT--S---------------SHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccC--C---------------CHHHHHHHHHH--------HHHHHHhhhhh
Confidence 4667888889999999999888854 11100 0 02222222222 35556677777
Q ss_pred CCccEEEEEEecCc--hH---HHHHHHHHhcCCc
Q 024982 132 AGFPYKIHIVKDHD--MR---ERLCLEIERLSLS 160 (259)
Q Consensus 132 ~~v~v~~~v~~g~~--~~---~~Il~~a~~~~~d 160 (259)
.|+.+..+...+.. .. +.+.+.+++.+.+
T Consensus 124 ~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 124 YGVRIALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp HTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred hcceEEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 78888877666542 12 6777777776643
No 241
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.73 E-value=5.3e+02 Score=23.80 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=21.0
Q ss_pred EEEEecCchHHHHHHHHHhcCCcEEEEecCC
Q 024982 138 IHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 138 ~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
..+..+.| ...+.+.+++.++|+++=++++
T Consensus 350 ~~i~~~~d-~~e~~~~i~~~~pDliig~~~~ 379 (421)
T cd01976 350 TLLYDDVT-HYELEEFVKRLKPDLIGSGIKE 379 (421)
T ss_pred eEEEcCCC-HHHHHHHHHHhCCCEEEecCcc
Confidence 44455544 5667788899999999966653
No 242
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.64 E-value=1.5e+02 Score=21.97 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=29.8
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCc
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGA 171 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~ 171 (259)
++..|.+ +...-...+.+.+++.+.+.++|.|++.......
T Consensus 23 l~~~G~~--vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~ 63 (122)
T cd02071 23 LRDAGFE--VIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGH 63 (122)
T ss_pred HHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEcccchhh
Confidence 3434554 4445555689999999999999999998874433
No 243
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=25.62 E-value=4.2e+02 Score=24.48 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHhcCCcEEEEecCCCC--cccccCCCcCCcHHHHHhhcC---CccEEEEeCCC
Q 024982 144 HDMRERLCLEIERLSLSAVIMGSRGFG--AEKRGSDGKLGSVSDYCVHHC---VCPVVVVRYPD 202 (259)
Q Consensus 144 ~~~~~~Il~~a~~~~~dLIVlG~~~~~--~~~~~~~~l~gs~~~~ll~~s---~~PVlvV~~~~ 202 (259)
....+++.+++++.++..+|+|..=.+ +--+. ++++++.++.++- ..|++++-..+
T Consensus 257 ~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~---v~asiarev~~~g~Pf~~P~~llsGGE 317 (422)
T COG2379 257 RLSLEAAASEARALGFKAVILGDTIEGEAREVGR---VHASIAREVARRGRPFKKPVVLLSGGE 317 (422)
T ss_pred HHHHHHHHHHHHhcCCeeEEeeccccccHHHHHH---HHHHHHHHHHHcCCCCCCCEEEEECCc
Confidence 447889999999999999999996433 33334 7899999999986 69999987654
No 244
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=25.50 E-value=1.5e+02 Score=20.62 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCccccc-CCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRG-SDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~-~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..+.|.+.+++++++.|.+|..+.- .+. ...+.-+..+.+-++.++||.++.+.
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v--~g~~~~~~~~~l~~~l~~~~~~pv~~~nDa 93 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNM--NGTASRETEEAFAELLKERFNLPVVLVDER 93 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCC--CCCcCHHHHHHHHHHHHHhhCCcEEEEeCC
Confidence 5666777777778999999987642 111 00011233344445678999988764
No 245
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.30 E-value=4.6e+02 Score=22.90 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCccccc------CCCcCCcHHHHHhhcCCccEEEEe
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRG------SDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~------~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
...+++.+++.++|.|.+........... .....-.....+-+..++||+..-
T Consensus 230 ~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 230 AIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 34567778888999999876543221110 000112344566666788887764
No 246
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.25 E-value=1.6e+02 Score=26.60 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=50.9
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
...+.+.-+-..-++......++++.|++.+.-+|+.-+.+.....+. .++........++++ +||.+-=++
T Consensus 12 ~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~--~~~~~~~~~~a~~~~~VPValHLDH 84 (347)
T PRK09196 12 HAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGE--PFLRHLILAAVEEYPHIPVVMHQDH 84 (347)
T ss_pred HHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCH--HHHHHHHHHHHHhCCCCcEEEECCC
Confidence 334446777777777777999999999999999999887754322111 145667777888876 898765433
No 247
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=25.21 E-value=4e+02 Score=22.11 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCC-cEEEEecCCC-CcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 147 RERLCLEIERLSL-SAVIMGSRGF-GAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~-dLIVlG~~~~-~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+.|++..+..+. |.|++-..-- ..-..+ +-+-+.+.+.++.++||.+|+.+
T Consensus 149 g~Dii~~L~~~~~~d~lllP~~ml~~~~~~f---LDD~t~~el~~~lg~~v~vv~~~ 202 (204)
T PF04459_consen 149 GQDIIEQLKGKELGDLLLLPDVMLRHGEGVF---LDDMTLEELEERLGVPVIVVRGP 202 (204)
T ss_pred HHHHHHHhCcCCCCCEEEECHHHhcCCCCcc---CCCCcHHHHHHHhCCcEEEeCCC
Confidence 4445555544333 7777755422 222333 44777788888888888888754
No 248
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.02 E-value=2.7e+02 Score=24.00 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=39.3
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeCCCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRYPDD 203 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~~~~ 203 (259)
+++.+.+.|++++.. ... ....+ . .++|.+++|++.-..-.++ -+-.|+-.-.++ ++..+||+++-....
T Consensus 126 ~a~~L~~~GI~vtli--~Ds-a~~~~---m--~~vd~VlvGAd~V~~nG~v-~nkvGT~~~Al~A~~~~vPv~V~~~s~K 196 (253)
T PRK06372 126 MAKLLVKSGIDVVLL--TDA-SMCEA---V--LNVDAVIVGSDSVLYDGGL-IHKNGTFPLALCARYLKKPFYSLTISMK 196 (253)
T ss_pred HHHHHHHCCCCEEEE--ehh-HHHHH---H--HhCCEEEECccEEecCCCE-eehhhHHHHHHHHHHcCCCEEEEeeccc
Confidence 444555568887543 222 22222 2 2399999999853221111 002366555554 667899999876443
Q ss_pred C
Q 024982 204 K 204 (259)
Q Consensus 204 ~ 204 (259)
.
T Consensus 197 f 197 (253)
T PRK06372 197 I 197 (253)
T ss_pred c
Confidence 3
No 249
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=24.93 E-value=1.2e+02 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++|||++ ..++.+...++.+.+ .|.+..+++..+.
T Consensus 2 ~~kvLi~-~~geia~~ii~a~~~----~Gi~~v~v~~~~d 36 (472)
T PRK07178 2 IKKILIA-NRGEIAVRIVRACAE----MGIRSVAIYSEAD 36 (472)
T ss_pred CcEEEEE-CCcHHHHHHHHHHHH----cCCeEEEEeCCCc
Confidence 5899998 555566666555544 5778777766543
No 250
>PRK07627 dihydroorotase; Provisional
Probab=24.84 E-value=1.6e+02 Score=27.33 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 52 DESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 52 ~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.....++.+++.+|+..+++++++|+...
T Consensus 209 ~aE~~av~r~~~la~~~~~~~hi~HvSs~ 237 (425)
T PRK07627 209 AAETIALHTIFELMRVTGARVHLARLSSA 237 (425)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEEeCCCH
Confidence 34567899999999999999999998654
No 251
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=24.78 E-value=49 Score=29.07 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=50.5
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc-cCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR-GSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~-~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
.+...+.+..+-..-+.+-....++++.|++.+..+|+.-+.+.....+ - .++.....+.+++++||.+-=+
T Consensus 9 l~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~---~~~~~~~~~a~~~~vPValHLD 81 (287)
T PF01116_consen 9 LKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLE---YLAAMVKAAAEEASVPVALHLD 81 (287)
T ss_dssp HHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHH---HHHHHHHHHHHHSTSEEEEEEE
T ss_pred HHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHH---HHHHHHHHHHHHcCCCEEeecc
Confidence 3333444777777777887799999999999999999987764433221 2 3567888999999999977543
No 252
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=24.76 E-value=1.6e+02 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 51 SDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 51 s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
+.....++.+++.+|+..|++++++|+-.
T Consensus 205 ~~aE~~~iar~~~la~~~g~~vhi~HiSt 233 (430)
T COG0044 205 PIAEASAIARDLELARATGARVHICHIST 233 (430)
T ss_pred hHHHHHHHHHHHHHHHHhCCcEEEEEcCC
Confidence 35667889999999999999999999853
No 253
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=24.67 E-value=2.9e+02 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 50 LSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 50 ~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
..+.+++.+++|.++|++.+.+|+++|=
T Consensus 139 tr~~~eRi~r~AF~~A~~r~~~Vt~v~K 166 (322)
T TIGR02088 139 TREGSERIARFAFNLAKERNRKVTCVHK 166 (322)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3467889999999999888777777663
No 254
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.49 E-value=1.5e+02 Score=24.68 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCC
Q 024982 148 ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~ 203 (259)
+.+.+.+.+.+.|.|.+|.+- +...- -+..+...+=+++++||++.|....
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gvt~~---~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GIVES---NLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CCCHH---HHHHHHHHHHhhcCCCEEEECCCcc
Confidence 346667778889999998762 11111 1233344444447899999886543
No 255
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.33 E-value=4.5e+02 Score=22.43 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
...+.+.+++.++|-+++..........- -+-..-..|+..++.|+++...+.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~---~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQE---GIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHH---HHHHHHHHHHhcCCCCEEEEECcc
Confidence 44556788999999999987644332221 222344567777889999997654
No 256
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.05 E-value=4.6e+02 Score=23.87 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEEecCchHHHHHHHHHhcCCcEEEEe
Q 024982 137 KIHIVKDHDMRERLCLEIERLSLSAVIMG 165 (259)
Q Consensus 137 ~~~v~~g~~~~~~Il~~a~~~~~dLIVlG 165 (259)
...+..+.| .+.+.+.+++.++||+|-|
T Consensus 325 ~~~v~~~~d-~~~l~~~i~~~~pDlli~~ 352 (396)
T cd01979 325 MVRIVEKPD-NYRQLDRIRELRPDLVVTG 352 (396)
T ss_pred CCeEEECCC-HHHHHHHHHhcCCCEEEec
Confidence 344556554 6667788999999999976
No 257
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=23.85 E-value=5.6e+02 Score=23.32 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=20.3
Q ss_pred CCCeEEEeecCCh--hHHHHHHHHHHHhCC
Q 024982 40 ARRKIGVAVDLSD--ESAFAVRWAVHHYLR 67 (259)
Q Consensus 40 ~~~rILVavD~s~--~s~~al~~A~~lA~~ 67 (259)
..+|.||.+.+.. ....+++||.+++..
T Consensus 50 ~d~rllvIvGPCSIhd~~~aleyA~rLk~l 79 (356)
T PRK12822 50 KDPRLLVIIGPCSIHDPQAALEYAKRLAVL 79 (356)
T ss_pred CCCCeEEEEcCCcCCCHHHHHHHHHHHHHH
Confidence 3477888887653 456888999888764
No 258
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.80 E-value=98 Score=25.58 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=23.9
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEec
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~ 166 (259)
+.+...+.+..+...+--| ....-+..+.+.++|.+|.|+
T Consensus 156 l~~~~~~~~~~~~I~vDGG--I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 156 LRKLIPENGLDFEIEVDGG--INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHTCGSEEEEESS--ESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHhcCCceEEEEECC--CCHHHHHHHHHcCCCEEEECH
Confidence 3344444466666655444 455556667778999999997
No 259
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.71 E-value=4.1e+02 Score=21.73 Aligned_cols=64 Identities=17% Similarity=0.085 Sum_probs=32.6
Q ss_pred ccEEEEEEecC--c-hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 134 FPYKIHIVKDH--D-MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 134 v~v~~~v~~g~--~-~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.+..++..+. + ....+++..++.++|.|.+-.+... .+......=....++.+..++||+..-
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~--~~~~~~~~~~~~~~i~~~~~ipvi~~G 190 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTRE--QRYSGPADWDYIAEIKEAVSIPVIANG 190 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHH--HcCCCCCCHHHHHHHHhCCCCeEEEeC
Confidence 44455444432 2 3556677778889999988543211 111000101122355555667777654
No 260
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=23.47 E-value=2.1e+02 Score=25.81 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=39.7
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeCC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRYP 201 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~~ 201 (259)
+..+.+.|++++..... ... -..+..++|.|++|+.+-..-... -+-.|.-.-.++ ++..+|++++-+.
T Consensus 199 a~eL~~~GI~vtlI~Ds---a~~---~~M~~~~vd~VivGAd~I~~nG~v-~NkiGT~~lAl~Ak~~~vPfyV~a~~ 268 (344)
T PRK05720 199 AWELYQAGIDVTVITDN---MAA---HLMQTGKIDAVIVGADRIAANGDV-ANKIGTYQLAIAAKYHGVPFYVAAPS 268 (344)
T ss_pred HHHHHHCCCCEEEEccc---HHH---HHhcccCCCEEEEcccEEecCCCE-eehhhHHHHHHHHHHhCCCEEEeccc
Confidence 34455568886654222 233 234456799999999753221111 002466555555 6677999998654
No 261
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=23.39 E-value=1.3e+02 Score=19.76 Aligned_cols=26 Identities=12% Similarity=-0.002 Sum_probs=21.3
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLR 67 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~ 67 (259)
++|.++.|+...++.+..+..+....
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 57999999999998888877776554
No 262
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.31 E-value=4.1e+02 Score=21.64 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=16.4
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEe
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMG 165 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG 165 (259)
++.|..+......+.+-...+++.....++|-||+.
T Consensus 26 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~ 61 (266)
T cd06278 26 QARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVT 61 (266)
T ss_pred HHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEe
Confidence 333555443333322123334445555667766664
No 263
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=23.18 E-value=5.6e+02 Score=23.75 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
-.....+.++..++|.||+-....+. ++..-..++..++||++.....
T Consensus 51 ~~~~~~~~~~~~~~d~ii~~~~tf~~---------~~~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 51 EARKAAEEFNEANCDGLIVWMHTFGP---------AKMWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHHhhcCCcEEEEccccccc---------HHHHHHHHHhcCCCEEEEeCCC
Confidence 35566678888899999987653332 2234455667899999997543
No 264
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.08 E-value=2.2e+02 Score=26.51 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=46.4
Q ss_pred CccEEEEEEecCc--------hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 133 GFPYKIHIVKDHD--------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 133 ~v~v~~~v~~g~~--------~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
+.++...+.=|++ ..+.|++.+++.++|++|.|--=.-+--+. .-|.++..|-.+..+|++.-=..+
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~---acg~va~aV~e~~~IP~vtaMy~E 117 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGM---AAGAITKAVQDELGIKAFTAMYEE 117 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHH---HHHHHHHHHHHhhCCCeEEEeccc
Confidence 5566666655543 346689999999999999998633222222 346778888888999998865443
No 265
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=22.96 E-value=2.2e+02 Score=25.84 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=38.5
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRY 200 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~ 200 (259)
.+.+.|++++..... ... -..++.++|.||+|+++-..-.+. -+-.|.-.-.++ ++..+|+.++-+
T Consensus 214 eL~~~GI~vtlI~Ds---av~---~~M~~~~Vd~VivGAd~I~~nG~v-~NKiGTy~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 214 EYHYDGIPLKLISDN---MAG---FVMQQGKVDAIIVGADRIVANGDF-ANKIGTYTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred HHHHCCCCEEEEehh---HHH---HHhhhcCCCEEEECccEEecCCCE-eehhhHHHHHHHHHHhCCCEEEEcc
Confidence 445568887654322 222 234556899999999853221111 002365554444 667899999853
No 266
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=22.89 E-value=1.8e+02 Score=22.00 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=33.4
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
..+|+|+-|....|....+.++.-....|.++..+...+.
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~t 79 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPT 79 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-H
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCc
Confidence 4899999999999999999999988889999998885543
No 267
>PRK10481 hypothetical protein; Provisional
Probab=22.85 E-value=4.1e+02 Score=22.44 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=35.9
Q ss_pred CccEEEEEEec-CchHHHHHHHHH---hcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 133 GFPYKIHIVKD-HDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 133 ~v~v~~~v~~g-~~~~~~Il~~a~---~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
|+.+....... ....+.+.+.++ ..++|.||++.-+.+. .....+-+...+||+.-
T Consensus 153 G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~----------~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 153 QKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ----------RHRDLLQKALDVPVLLS 212 (224)
T ss_pred CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH----------HHHHHHHHHHCcCEEcH
Confidence 55555433221 123456666666 6789999999987663 23567777788998754
No 268
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=22.65 E-value=5.7e+02 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=16.5
Q ss_pred cCchHHHHHHHHHhcCCcEEEEec
Q 024982 143 DHDMRERLCLEIERLSLSAVIMGS 166 (259)
Q Consensus 143 g~~~~~~Il~~a~~~~~dLIVlG~ 166 (259)
|..-.++|.+.++..++|+||...
T Consensus 51 g~gk~~e~~~~~~~~~~~~vi~~~ 74 (351)
T TIGR03156 51 GKGKVEEIAELVEELEADLVIFDH 74 (351)
T ss_pred cccHHHHHHHHHHhcCCCEEEECC
Confidence 334567777777777788777764
No 269
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=22.62 E-value=73 Score=25.05 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCcEEEEecC
Q 024982 146 MRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
..+.|.++++++++|+|++|..
T Consensus 51 ~~~~l~~~i~~~kP~vI~v~g~ 72 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAVGGN 72 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE--S
T ss_pred HHHHHHHHHHHcCCeEEEEcCC
Confidence 3556667788888888888554
No 270
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=22.50 E-value=3.1e+02 Score=23.09 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=37.0
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
.|+.-+.+...|.+..+.+.+ -...++|+|.+...+.....-+ .....+++. +=|+++-.
T Consensus 107 ag~~~~i~~~~~gdal~~l~~-~~~~~fDliFIDadK~~yp~~l------e~~~~lLr~--GGliv~DN 166 (219)
T COG4122 107 AGVDDRIELLLGGDALDVLSR-LLDGSFDLVFIDADKADYPEYL------ERALPLLRP--GGLIVADN 166 (219)
T ss_pred cCCcceEEEEecCcHHHHHHh-ccCCCccEEEEeCChhhCHHHH------HHHHHHhCC--CcEEEEee
Confidence 377666666665557887766 3356899999998755443322 445555554 44555543
No 271
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=22.47 E-value=1.9e+02 Score=26.78 Aligned_cols=27 Identities=7% Similarity=-0.119 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 024982 52 DESAFAVRWAVHHYLRPGDAVILVHVS 78 (259)
Q Consensus 52 ~~s~~al~~A~~lA~~~~a~l~llhV~ 78 (259)
..+...+++|.++|+..+.+|+++|=.
T Consensus 186 ~~~eRIar~AF~~A~~~~~~Vt~v~Ka 212 (409)
T TIGR00127 186 ESIEGFAHSSFQLALEKKWPLYLSTKN 212 (409)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 567899999999998887778777643
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.41 E-value=6.5e+02 Score=23.56 Aligned_cols=31 Identities=26% Similarity=0.123 Sum_probs=18.6
Q ss_pred EeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 46 VAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 46 VavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
+...|+=.+..+...|..+.+ .|-.+.++..
T Consensus 101 vG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~ 131 (437)
T PRK00771 101 VGLQGSGKTTTAAKLARYFKK-KGLKVGLVAA 131 (437)
T ss_pred ECCCCCcHHHHHHHHHHHHHH-cCCeEEEecC
Confidence 333455556667777766654 5667776654
No 273
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=22.35 E-value=4e+02 Score=22.54 Aligned_cols=89 Identities=7% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhCCccEEEEEEe-cCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 117 FTATKAADLARPLKEAGFPYKIHIVK-DHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~v~~~v~~-g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
+..+....+.+.+.+.|+.+...... ..+.....++.....++|-||++....+..... + ..+++.++|+
T Consensus 40 f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~---l------~~~~~~~ipv 110 (295)
T PRK10653 40 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA---V------KMANQANIPV 110 (295)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHH---H------HHHHHCCCCE
Q ss_pred EEEeCCCCCCCCCCeeeec
Q 024982 196 VVVRYPDDKDDGEPLVKVK 214 (259)
Q Consensus 196 lvV~~~~~~~~~~~l~av~ 214 (259)
+++............+..|
T Consensus 111 V~~~~~~~~~~~~~~V~~D 129 (295)
T PRK10653 111 ITLDRGATKGEVVSHIASD 129 (295)
T ss_pred EEEccCCCCCceeeEEccC
No 274
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.25 E-value=1.7e+02 Score=23.28 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
..+.+++.+++.++|+|++|--. .-+.. ...+..++.+.+|++-
T Consensus 87 ~~~~i~~~I~~~~pdiv~vglG~--PkQE~-------~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 87 EEEEIIERINASGADILFVGLGA--PKQEL-------WIARHKDRLPVPVAIG 130 (171)
T ss_pred hHHHHHHHHHHcCCCEEEEECCC--CHHHH-------HHHHHHHHCCCCEEEE
Confidence 35558999999999999998742 12222 2455555666776664
No 275
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=22.21 E-value=5.7e+02 Score=22.85 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=24.4
Q ss_pred eEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 43 rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
.++|++.|...|..++..+.. ..|..+.++|+..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~---~~gl~~l~vt~~~ 94 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKK---KLGLNPLLVTVDP 94 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHH---HhCCceEEEEECC
Confidence 599999999999888765543 3455666677653
No 276
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=22.19 E-value=2.3e+02 Score=25.46 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=37.9
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRY 200 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~ 200 (259)
.+.+.|++++..... ....+ .++.++|.+++|+..-..-..+ -+-.|+-.-.++ ++.++|++++-+
T Consensus 201 ~L~~~GI~vtlI~Ds---av~~~---m~~~~vd~VivGAd~v~~nG~v-~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 201 ELVQEGIPATLITDS---MAAHL---MKHGEVDAVIVGADRIAANGDT-ANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred HHHHCCCCEEEEccc---HHHHH---hcccCCCEEEEcccEEecCCCE-eehhhHHHHHHHHHHhCCCEEEecc
Confidence 344558876643222 33333 3456799999999753221111 002466555555 667899999865
No 277
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=22.18 E-value=2.7e+02 Score=23.87 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.-++.+.+++.++|-|++..........- -+-.--.+|+..+++|+++...+
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~~---~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQE---GLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCHH---HHHHHHHHHHhcCCCCEEEEECh
Confidence 44566888999999999987644222111 11234566777889999999654
No 278
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=22.13 E-value=2.3e+02 Score=22.10 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=26.1
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF 169 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~ 169 (259)
.+...-+++.|. +.+.=.+..++.++|.|++|--..
T Consensus 62 s~ryVD~vi~~~-p~~~~~~~i~~~k~Div~lG~D~~ 97 (140)
T COG0615 62 SLRYVDEVILGA-PWDIKFEDIEEYKPDIVVLGDDQK 97 (140)
T ss_pred cCcchheeeeCC-ccccChHHHHHhCCCEEEECCCCc
Confidence 445555667765 444437889999999999998755
No 279
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.96 E-value=3.1e+02 Score=19.69 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=37.0
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
.|+.++....... -...|.+..++.++|+||--..+... . -.|-.-++..-...+|++
T Consensus 42 ~gi~~~~v~~~~~-~~~~i~~~i~~~~id~vIn~~~~~~~---~---~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 42 AGIPVEVVNKVSE-GRPNIVDLIKNGEIQLVINTPSGKRA---I---RDGFSIRRAALEYKVPYF 99 (110)
T ss_pred cCCeEEEEeecCC-CchhHHHHHHcCCeEEEEECCCCCcc---C---ccHHHHHHHHHHhCCCEE
Confidence 4777665544422 34668899999999999997653331 1 224455566666678876
No 280
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=21.91 E-value=6.2e+02 Score=23.15 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=29.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
.-.++++++.|.-+|.-++.++.+ .|.++..+|+..
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 347899999999999888877644 478999999853
No 281
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=21.91 E-value=3.7e+02 Score=20.86 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=25.4
Q ss_pred HhhhhhhCCccEEEEEEecCc---hHHHHHHHHHhcCCcEEEE
Q 024982 125 LARPLKEAGFPYKIHIVKDHD---MRERLCLEIERLSLSAVIM 164 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~---~~~~Il~~a~~~~~dLIVl 164 (259)
+.+.+...| +++......+ ....-.+.++..++|++|=
T Consensus 33 l~~~L~~~g--~~V~~tr~~d~~~~l~~R~~~an~~~ad~~is 73 (175)
T PF01520_consen 33 LKKELEKHG--IKVYLTRDNDSDVSLQERAALANSWGADLFIS 73 (175)
T ss_dssp HHHHHHHTT--EEEEESSSSSHCCCHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhcccCEEEE
Confidence 444555556 4444444444 4777888999999999885
No 282
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.81 E-value=6.3e+02 Score=23.17 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=22.2
Q ss_pred EEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 138 IHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 138 ~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
..+..+.| ...+.+.+++.++||+|=|+.
T Consensus 324 ~~v~~~~d-~~~l~~~i~~~~pDllig~~~ 352 (407)
T TIGR01279 324 VRIVEQPD-FHRQLQRIRATRPDLVVTGLG 352 (407)
T ss_pred CeEEeCCC-HHHHHHHHHhcCCCEEecCcc
Confidence 45667765 566778889999999997773
No 283
>PRK06849 hypothetical protein; Provisional
Probab=21.77 E-value=3.3e+02 Score=24.60 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=20.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
..++|||--.... .++..|..+.+ .|.+++++..
T Consensus 3 ~~~~VLI~G~~~~---~~l~iar~l~~-~G~~Vi~~d~ 36 (389)
T PRK06849 3 TKKTVLITGARAP---AALELARLFHN-AGHTVILADS 36 (389)
T ss_pred CCCEEEEeCCCcH---HHHHHHHHHHH-CCCEEEEEeC
Confidence 4478887754333 45555555555 4788777644
No 284
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.74 E-value=2.4e+02 Score=26.34 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=46.5
Q ss_pred CccEEEEEEecCc--------hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 133 GFPYKIHIVKDHD--------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 133 ~v~v~~~v~~g~~--------~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
+.++...+.=|++ ..+.|++.+++.++|++|.|--=.-+--+. .-|.++..|-.+..+|++.-=..+
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~---acg~va~aV~e~~~IP~vt~My~E 117 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGV---ACGEICKVVQDKLNVPAVTSMYVE 117 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHH---HHHHHHHHHHHhhCCCeEEEeccc
Confidence 5566666655543 346689999999999999998633222222 346778888888999998765443
No 285
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=21.68 E-value=1.4e+02 Score=23.09 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=28.3
Q ss_pred cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCC
Q 024982 157 LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (259)
Q Consensus 157 ~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~ 203 (259)
.++|+||+.+.+. ..... ..+...-.+++...+||++|-....
T Consensus 98 ~~~D~viid~~g~-~~~~~---~~~~~~~dl~~~~~~~vilV~~~~~ 140 (166)
T TIGR00347 98 QKYDFVLVEGAGG-LCVPI---TEEYTTADLIKLLQLPVILVVRVKL 140 (166)
T ss_pred hcCCEEEEEcCCc-cccCC---CCCCcHHHHHHHhCCCEEEEECCCC
Confidence 5699999988763 12222 2333455688888999999975433
No 286
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=21.63 E-value=6.8e+02 Score=23.52 Aligned_cols=102 Identities=9% Similarity=0.066 Sum_probs=64.8
Q ss_pred HHHHHHHhhhhhhCCccEEEEEEec------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc--
Q 024982 119 ATKAADLARPLKEAGFPYKIHIVKD------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-- 190 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~v~v~~~v~~g------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~-- 190 (259)
+++.+.+.+....++.+-.+.++-| +...+.|++.+..+++.-+++|..+ + +-.+....++|+
T Consensus 37 eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv~rlivGqnG------i---LSTPAvS~iIRk~~ 107 (558)
T KOG0625|consen 37 ENFVQAIMNALPGEKSKGATLVVGGDGRYYNKEAIQIIAKIAAANGVGRLIVGQNG------I---LSTPAVSCIIRKYI 107 (558)
T ss_pred HHHHHHHHhccccccccCceEEEcCCCcchhHHHHHHHHHHHhhcCcceEEeccCC------c---ccchHHHHHHHhhc
Confidence 3334444444443455545555554 3377889999999999999999864 3 567888899998
Q ss_pred CCcc-EEEE-eCCCCCCCCCCeeeecCCCCCCcchhhhccc
Q 024982 191 CVCP-VVVV-RYPDDKDDGEPLVKVKEPEKDDEDDHVDRKL 229 (259)
Q Consensus 191 s~~P-VlvV-~~~~~~~~~~~l~av~~~~~~~~~~~~~~~~ 229 (259)
+..= +++- .+..-.+....-+..+.+...+..+...++|
T Consensus 108 ka~GGiILTASHnPGGP~~DfGIKfN~~NGgPAPesvTdkI 148 (558)
T KOG0625|consen 108 KAGGGIILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKI 148 (558)
T ss_pred ccCceEEEEeccCCCCCCCccceEEecCCCCCChHHHHHHH
Confidence 4322 3333 3333334555667777777777777777766
No 287
>PRK04148 hypothetical protein; Provisional
Probab=21.25 E-value=3.9e+02 Score=20.57 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=29.4
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE 172 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~ 172 (259)
+.+....++-..+.-..|++.+++.++|++|.--.+....
T Consensus 77 ~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 77 NAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred cCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 5666666666666778888888888888888766655543
No 288
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=21.24 E-value=2.7e+02 Score=24.33 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=36.6
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRY 200 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~ 200 (259)
+..+.+.|++++..... ....+ .++ +|.+++|...-..-... -+-.|.-.-.++ ++..+|++++-+
T Consensus 153 a~eL~~~GI~vtlI~Ds---a~~~~---m~~--vd~VivGAD~I~~nG~v-~NKiGT~~lA~~Ak~~~vPfyV~a~ 219 (275)
T PRK08335 153 ANELEFLGIEFEVITDA---QLGLF---AKE--ATLALVGADNVTRDGYV-VNKAGTYLLALACHDNGVPFYVAAE 219 (275)
T ss_pred HHHHHHCCCCEEEEecc---HHHHH---HHh--CCEEEECccEEecCCCE-eehhhHHHHHHHHHHcCCCEEEECc
Confidence 34445558886654332 23333 233 99999999753221111 002365544444 667799999954
No 289
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.23 E-value=4.8e+02 Score=21.58 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=38.3
Q ss_pred HHHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCc
Q 024982 123 ADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (259)
Q Consensus 123 ~~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~ 193 (259)
+++.+.+.+.++++-...... .+-.....+.+.+.++|.|-....+ +. ...+++.+.+++
T Consensus 112 ~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~-----~~------~~~~~i~~~~~~ 180 (235)
T cd00958 112 ARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG-----DA------ESFKEVVEGCPV 180 (235)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC-----CH------HHHHHHHhcCCC
Confidence 334455555677765544331 1122223455778899988884321 12 456788889999
Q ss_pred cEEEEe
Q 024982 194 PVVVVR 199 (259)
Q Consensus 194 PVlvV~ 199 (259)
||++.-
T Consensus 181 pvv~~G 186 (235)
T cd00958 181 PVVIAG 186 (235)
T ss_pred CEEEeC
Confidence 986554
No 290
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.23 E-value=3.9e+02 Score=23.25 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=37.3
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
.+.+-..+-..-+-.-.+.+.+++.++|-+++-.........- -+-.--..|+..+++||++..
T Consensus 74 ~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~---~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 74 KVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQE---GLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHhccCCCEEEEe
Confidence 4555554432111233466788889999998866533221111 112234567778889999997
No 291
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=21.17 E-value=3.1e+02 Score=23.12 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..+.-+..++.++|.||+++..... .+ .+-++.++..+..|.+++...
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpaa-PG------P~kARE~l~~s~~PaiiigDa 96 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPAA-PG------PKKAREILSDSDVPAIIIGDA 96 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC-CC------chHHHHHHhhcCCCEEEecCC
Confidence 3556677789999999999874432 22 246889999999999999754
No 292
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.12 E-value=4.8e+02 Score=21.58 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=36.8
Q ss_pred hhhhhhCCccEEEEEEecC-chHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 126 ARPLKEAGFPYKIHIVKDH-DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~-~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+.+++.|+.+...-..++ .....+++.....++|-||+........ ...-+-++...+||+++-..
T Consensus 22 ~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~---------~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 22 KDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGW---------DPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred HHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccc---------hHHHHHHHHCCCCEEEEecC
Confidence 3344445666555433222 1233456667778899998865321110 11223456778999998653
No 293
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.12 E-value=1.9e+02 Score=25.59 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=35.9
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHH-HhhcCCccEEEEeC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDY-CVHHCVCPVVVVRY 200 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~-ll~~s~~PVlvV~~ 200 (259)
..+.+.|++++..... ..-.++ ++ +|.+++|++.-..-.++ -+..|+-.-. +.++..+||+++-+
T Consensus 165 ~~L~~~GI~vtlI~Ds---av~~~m---~~--vd~VivGAd~v~~nG~v-~nkiGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 165 KELAEYGIPVTLIVDS---AVRYFM---KD--VDKVVVGADAITANGAV-INKIGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred HHHHHCCCCEEEEehh---HHHHHH---Hh--CCEEEECccEEecCCCE-EeHHhHHHHHHHHHHhCCCEEEecc
Confidence 3444558876654332 233332 33 99999999853221111 0023554444 44667899999854
No 294
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=20.98 E-value=6.3e+02 Score=23.27 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCc
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGA 171 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~ 171 (259)
.++.+++.|++.+++.|.-|+.|++.
T Consensus 93 Ia~~~v~~A~~~ga~~vaHG~TgkGN 118 (388)
T PF00764_consen 93 IAKKLVEVAREEGADAVAHGCTGKGN 118 (388)
T ss_dssp HHHHHHHHHHHHT-SEEE----TTSS
T ss_pred HHHHHHHHHHHcCCeEEeccCCcCCC
Confidence 67889999999999999999987663
No 295
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=20.89 E-value=1.9e+02 Score=21.97 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCc--CCcHHHHHhhcCCccEEEEeC
Q 024982 144 HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGK--LGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 144 ~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l--~gs~~~~ll~~s~~PVlvV~~ 200 (259)
.+-...+++.++..++|.|++-. -+++.|- . ...+.+.+..+..+.++.+..
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~--ldRl~R~---~~d~~~~~~~l~~~~gv~l~~~~~ 107 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKD--MSRLGRN---YLKVGLYMEILFPKKGVRFIAIND 107 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEec--cchhccC---HHHHHHHHHHHHhhcCcEEEEecC
Confidence 44678899999999999998854 3333332 1 012333444444888888864
No 296
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=20.80 E-value=2.2e+02 Score=25.15 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=36.5
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHH-hhcCCccEEEEeC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYC-VHHCVCPVVVVRY 200 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~l-l~~s~~PVlvV~~ 200 (259)
+..+.+.|++++..... ....++ + ++|.+++|+..-..-.++ -+-.|+-.-.+ .++..+||+++-+
T Consensus 159 a~~L~~~gI~vtlI~Ds---a~~~~m---~--~vd~VivGad~v~~nG~v-~nkiGT~~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 159 AKELRDYGIPVTLIVDS---AVRYFM---K--EVDHVVVGADAITANGAL-INKIGTSQLALAAREARVPFMVAAE 225 (301)
T ss_pred HHHHHHCCCCEEEEehh---HHHHHH---H--hCCEEEECccEEecCCCE-EEHHhHHHHHHHHHHhCCCEEEEcc
Confidence 34445558887664322 233333 2 399999999753221111 00235544444 4567899999855
No 297
>PRK10799 metal-binding protein; Provisional
Probab=20.65 E-value=98 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
..++|++++|.+++. ++. |...|+.+.+.|=
T Consensus 34 ~v~~I~~alD~t~~v---i~~----A~~~~~dlIitHH 64 (247)
T PRK10799 34 TVQKIVTGVTASQAL---LDE----AVRLQADAVIVHH 64 (247)
T ss_pred cccEEEEEeCCCHHH---HHH----HHHCCCCEEEECC
Confidence 568999999998765 333 3445788888774
No 298
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.51 E-value=7.1e+02 Score=23.30 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=21.5
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
..||+.+..++. .++.++..+....|.++..+.
T Consensus 324 ~GkrvaI~~~~~----~~~~l~~~l~~ElGmevv~~~ 356 (457)
T TIGR01284 324 RGKKVWVWSGGP----KLWHWPRPLEDELGMEVVAVS 356 (457)
T ss_pred CCCEEEEECCCc----HHHHHHHHHHHhCCCEEEEEE
Confidence 457888877763 445555556556888877753
No 299
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=20.44 E-value=1.4e+02 Score=23.98 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC-CcccccCCCcCCcHH---HHHhhcCCccEEEEe
Q 024982 124 DLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF-GAEKRGSDGKLGSVS---DYCVHHCVCPVVVVR 199 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~-~~~~~~~~~l~gs~~---~~ll~~s~~PVlvV~ 199 (259)
.++..+.+.|++++..= ..++.+ .+-.++|-||+|++=+ +.+.+. +++.. ...|...|.-+..|.
T Consensus 20 ~iA~~L~e~g~qvdi~d------l~~~~~-~~l~~ydavVIgAsI~~~h~~~~----~~~Fv~k~~e~L~~kP~A~f~vn 88 (175)
T COG4635 20 YIASHLRESGIQVDIQD------LHAVEE-PALEDYDAVVIGASIRYGHFHEA----VQSFVKKHAEALSTKPSAFFSVN 88 (175)
T ss_pred HHHHHhhhcCCeeeeee------hhhhhc-cChhhCceEEEecchhhhhhHHH----HHHHHHHHHHHHhcCCceEEEee
Confidence 35555666677776642 222222 3456799999999743 334332 23322 234445555555554
No 300
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=20.32 E-value=5.3e+02 Score=21.76 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=29.6
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
++++|+..|.-+|..++.++.+ .+.+++.+++.+..
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~----~~~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ----QYDEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh----cCCeEEEEEEEeCC
Confidence 6899999999999999988854 24589999998764
No 301
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=20.29 E-value=1.8e+02 Score=25.00 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=31.3
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCC-CEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPG-DAVILV 75 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~-a~l~ll 75 (259)
...-+++.+|+|..|-...++..+|+...| -++.++
T Consensus 155 ~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V 191 (255)
T COG3640 155 GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVV 191 (255)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 557899999999999999999999999999 566554
No 302
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.27 E-value=7.8e+02 Score=23.68 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=71.7
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
|-=..|.|.|-=.|......|.+|.+ .+-.+.+.-+.+- +.-+.++|+...+... +
T Consensus 379 YVi~fvGVNGVGKSTNLAKIayWLlq-NkfrVLIAACDTF----------------------RsGAvEQLrtHv~rl~-~ 434 (587)
T KOG0781|consen 379 YVISFVGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTF----------------------RSGAVEQLRTHVERLS-A 434 (587)
T ss_pred eEEEEEeecCccccchHHHHHHHHHh-CCceEEEEeccch----------------------hhhHHHHHHHHHHHHH-H
Confidence 34456777777778888888888866 4556655544333 3333444443222210 0
Q ss_pred HHHHHhhhhhhCCccEEEEEEecCc---hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEE
Q 024982 121 KAADLARPLKEAGFPYKIHIVKDHD---MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g~~---~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlv 197 (259)
......+.+.. | +|+| ++..-+++|+..++|.|.|.+.||-.-..- ++++.+.-+=-+-|--|+.
T Consensus 435 l~~~~v~lfek-G--------Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~---lm~~l~k~~~~~~pd~i~~ 502 (587)
T KOG0781|consen 435 LHGTMVELFEK-G--------YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAP---LMTSLAKLIKVNKPDLILF 502 (587)
T ss_pred hccchhHHHhh-h--------cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChh---HHHHHHHHHhcCCCceEEE
Confidence 00011111111 2 1222 566777999999999999999988766666 7877665444445555555
Q ss_pred EeC
Q 024982 198 VRY 200 (259)
Q Consensus 198 V~~ 200 (259)
|-+
T Consensus 503 vge 505 (587)
T KOG0781|consen 503 VGE 505 (587)
T ss_pred ehh
Confidence 543
No 303
>PRK07369 dihydroorotase; Provisional
Probab=20.25 E-value=1.9e+02 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 50 LSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 50 ~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
+...-..++.+++.+|+..|++++++|+-...
T Consensus 208 p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~ 239 (418)
T PRK07369 208 PASAETTALAALLELVAAIGTPVHLMRISTAR 239 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHH
Confidence 34445678999999999999999999996543
No 304
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.18 E-value=4.8e+02 Score=22.49 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
.-...+.+++.++|-+++..........- -+-.--.+|+..++.||++...+.
T Consensus 85 ~i~~a~~a~~~G~d~v~~~pP~~~~~~~~---~i~~~~~~ia~~~~~pv~lYn~P~ 137 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVTPYYNKPTQE---GLYQHFKAIAEATDLPIILYNVPG 137 (292)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHH---HHHHHHHHHHhcCCCCEEEEECcc
Confidence 44455788889999999977643322111 112344567778899999997543
No 305
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=20.15 E-value=4.2e+02 Score=20.55 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=27.4
Q ss_pred HHhhhhhhCCccEEEEEEecC-chHHHHHHHHHhcCCcEEEEec
Q 024982 124 DLARPLKEAGFPYKIHIVKDH-DMRERLCLEIERLSLSAVIMGS 166 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g~-~~~~~Il~~a~~~~~dLIVlG~ 166 (259)
.+.+.++..|+++........ ...+.-...++..++|++|-=.
T Consensus 33 ~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH 76 (172)
T cd02696 33 KLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIH 76 (172)
T ss_pred HHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 344555555666544433221 2577788999999999998644
No 306
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=20.14 E-value=3.9e+02 Score=22.22 Aligned_cols=69 Identities=10% Similarity=-0.018 Sum_probs=39.6
Q ss_pred HHHHhhhhhhCCccEEEEEEecCch---------HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC
Q 024982 122 AADLARPLKEAGFPYKIHIVKDHDM---------RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV 192 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~~~---------~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~ 192 (259)
.+++.+.+...++.+..+....+.. .....+.+.+.++|.|=..+.+. .-... ---..-.++++.++
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~---~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATP---EDVELMRKAVEAAP 189 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHH---HHHHHHHHHHHTHS
T ss_pred HHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccH---HHHHHHHHHHHhcC
Confidence 3446666777788877774433322 25677788889999988877622 11111 00123456777788
Q ss_pred cc
Q 024982 193 CP 194 (259)
Q Consensus 193 ~P 194 (259)
+|
T Consensus 190 ~p 191 (236)
T PF01791_consen 190 VP 191 (236)
T ss_dssp ST
T ss_pred CC
Confidence 88
No 307
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=20.04 E-value=2.3e+02 Score=24.30 Aligned_cols=19 Identities=26% Similarity=0.116 Sum_probs=12.2
Q ss_pred HHhhcCCccEEEEeCCCCC
Q 024982 186 YCVHHCVCPVVVVRYPDDK 204 (259)
Q Consensus 186 ~ll~~s~~PVlvV~~~~~~ 204 (259)
+.|...+||+++||.+...
T Consensus 83 ~~L~~~~~p~~~vPG~~Da 101 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDA 101 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-
T ss_pred HHHHhcCCcEEEecCCCCc
Confidence 4677899999999987554
Done!