Query 024982
Match_columns 259
No_of_seqs 167 out of 1830
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 2.3E-25 7.9E-30 173.6 16.9 142 39-199 3-146 (146)
2 3olq_A Universal stress protei 99.9 8.2E-26 2.8E-30 198.2 14.9 176 37-228 3-178 (319)
3 1mjh_A Protein (ATP-binding do 99.9 1.5E-24 5E-29 172.2 18.6 154 40-201 4-160 (162)
4 2dum_A Hypothetical protein PH 99.9 1E-24 3.4E-29 174.7 15.6 154 38-204 2-160 (170)
5 3idf_A USP-like protein; unive 99.9 3.6E-24 1.2E-28 165.4 16.5 136 41-199 1-138 (138)
6 3fg9_A Protein of universal st 99.9 6.7E-24 2.3E-28 167.5 16.5 141 38-199 12-156 (156)
7 3tnj_A Universal stress protei 99.9 5.5E-24 1.9E-28 166.7 15.3 147 37-202 2-149 (150)
8 3hgm_A Universal stress protei 99.9 3.7E-24 1.3E-28 166.8 13.9 144 40-198 1-147 (147)
9 3mt0_A Uncharacterized protein 99.9 4.3E-24 1.5E-28 185.3 13.4 160 4-201 110-277 (290)
10 2z08_A Universal stress protei 99.9 8.3E-24 2.9E-28 163.4 13.4 136 40-199 1-137 (137)
11 1tq8_A Hypothetical protein RV 99.9 6E-24 2.1E-28 169.7 12.9 143 39-202 15-160 (163)
12 3dlo_A Universal stress protei 99.9 7.3E-24 2.5E-28 167.9 12.7 133 38-199 21-155 (155)
13 2gm3_A Unknown protein; AT3G01 99.9 3.2E-23 1.1E-27 166.8 15.4 150 40-202 4-165 (175)
14 3olq_A Universal stress protei 99.9 4E-24 1.4E-28 187.4 9.7 166 4-202 132-307 (319)
15 3mt0_A Uncharacterized protein 99.9 1.6E-23 5.3E-28 181.8 12.5 154 37-228 3-156 (290)
16 3fdx_A Putative filament prote 99.9 2.5E-23 8.5E-28 161.5 12.0 140 42-199 2-143 (143)
17 3loq_A Universal stress protei 99.9 7.1E-24 2.4E-28 184.2 9.3 166 31-217 12-181 (294)
18 3loq_A Universal stress protei 99.9 1.6E-23 5.6E-28 181.9 10.8 149 4-202 144-292 (294)
19 3cis_A Uncharacterized protein 99.9 2.1E-23 7.2E-28 182.5 11.4 163 4-201 143-307 (309)
20 3cis_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 174.8 13.9 162 35-218 13-183 (309)
21 3ab8_A Putative uncharacterize 99.9 4.7E-22 1.6E-26 170.2 14.0 165 42-218 1-166 (268)
22 1jmv_A USPA, universal stress 99.9 9.4E-22 3.2E-26 152.3 9.6 138 40-201 1-139 (141)
23 3ab8_A Putative uncharacterize 99.9 1.5E-21 5E-26 167.1 10.5 138 4-199 131-268 (268)
24 1q77_A Hypothetical protein AQ 99.8 4.8E-20 1.7E-24 142.2 11.5 132 40-199 3-138 (138)
25 2iel_A Hypothetical protein TT 95.6 0.4 1.4E-05 36.0 12.6 130 41-199 1-134 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 93.0 0.67 2.3E-05 42.1 10.6 40 41-80 18-57 (464)
27 1wy5_A TILS, hypothetical UPF0 92.9 1.1 3.8E-05 38.4 11.4 40 41-80 24-64 (317)
28 3g40_A Na-K-CL cotransporter; 92.4 1.7 5.7E-05 36.9 11.3 123 42-202 21-148 (294)
29 3ih5_A Electron transfer flavo 91.5 0.66 2.2E-05 37.8 7.7 87 41-168 3-101 (217)
30 2xry_A Deoxyribodipyrimidine p 90.2 1.2 4.2E-05 40.6 9.1 116 49-200 46-161 (482)
31 1o97_C Electron transferring f 90.1 1.7 5.7E-05 36.5 9.2 34 46-79 31-66 (264)
32 1efp_B ETF, protein (electron 88.7 4.3 0.00015 33.7 10.6 32 47-79 32-65 (252)
33 1efv_B Electron transfer flavo 88.4 4.1 0.00014 33.8 10.3 33 47-80 35-69 (255)
34 4b4k_A N5-carboxyaminoimidazol 87.0 4.7 0.00016 31.6 9.0 66 126-202 42-110 (181)
35 4grd_A N5-CAIR mutase, phospho 86.5 2.7 9.3E-05 32.7 7.4 64 127-201 33-99 (173)
36 3qjg_A Epidermin biosynthesis 86.4 1.7 5.7E-05 34.1 6.4 113 41-199 5-117 (175)
37 2ywx_A Phosphoribosylaminoimid 85.7 3.6 0.00012 31.6 7.6 64 126-200 19-82 (157)
38 3g40_A Na-K-CL cotransporter; 84.3 3.4 0.00012 35.0 7.6 136 11-203 135-280 (294)
39 1xmp_A PURE, phosphoribosylami 83.2 5.3 0.00018 31.0 7.7 65 127-202 32-99 (170)
40 3trh_A Phosphoribosylaminoimid 83.1 4.7 0.00016 31.3 7.3 64 127-201 27-93 (169)
41 3kuu_A Phosphoribosylaminoimid 82.9 5.2 0.00018 31.2 7.6 64 127-201 33-99 (174)
42 3oow_A Phosphoribosylaminoimid 81.4 7.1 0.00024 30.2 7.8 65 127-202 26-93 (166)
43 1u11_A PURE (N5-carboxyaminoim 81.0 6 0.0002 31.1 7.3 65 127-202 42-109 (182)
44 3ors_A N5-carboxyaminoimidazol 80.5 6.8 0.00023 30.2 7.4 65 127-202 24-91 (163)
45 1dnp_A DNA photolyase; DNA rep 80.4 9.2 0.00031 34.7 9.6 117 50-200 11-130 (471)
46 3bl5_A Queuosine biosynthesis 80.2 19 0.00067 28.2 10.8 36 41-80 3-38 (219)
47 1zun_A Sulfate adenylyltransfe 79.6 11 0.00038 32.3 9.4 40 41-80 46-85 (325)
48 3lp6_A Phosphoribosylaminoimid 79.6 6.5 0.00022 30.7 7.1 64 127-201 28-94 (174)
49 1ni5_A Putative cell cycle pro 78.5 7.5 0.00026 34.8 8.3 40 41-80 13-53 (433)
50 1o4v_A Phosphoribosylaminoimid 78.4 7.4 0.00025 30.6 7.1 65 127-202 34-101 (183)
51 3umv_A Deoxyribodipyrimidine p 77.8 7.6 0.00026 35.6 8.2 89 49-164 47-135 (506)
52 3rg8_A Phosphoribosylaminoimid 77.7 7 0.00024 30.0 6.7 64 127-201 23-90 (159)
53 1sur_A PAPS reductase; assimil 77.2 22 0.00076 28.0 10.1 35 42-80 45-79 (215)
54 2j07_A Deoxyribodipyrimidine p 76.9 11 0.00038 33.5 8.9 111 49-200 11-121 (420)
55 1np7_A DNA photolyase; protein 73.3 44 0.0015 30.2 12.1 131 42-201 6-138 (489)
56 2wq7_A RE11660P; lyase-DNA com 71.9 21 0.0007 33.0 9.6 100 43-167 30-133 (543)
57 2c5s_A THII, probable thiamine 71.6 40 0.0014 29.8 11.2 35 41-79 187-221 (413)
58 1iv0_A Hypothetical protein; r 71.3 7.7 0.00026 27.1 5.1 53 145-201 38-94 (98)
59 3zqu_A Probable aromatic acid 70.8 5.8 0.0002 31.9 5.0 38 38-76 1-38 (209)
60 1u3d_A Cryptochrome 1 apoprote 70.1 37 0.0013 30.9 10.9 118 49-200 21-138 (509)
61 1owl_A Photolyase, deoxyribodi 69.8 13 0.00044 33.8 7.7 118 49-200 12-129 (484)
62 3tvs_A Cryptochrome-1; circadi 69.0 13 0.00043 34.4 7.5 92 49-166 13-107 (538)
63 3kcq_A Phosphoribosylglycinami 68.3 44 0.0015 26.7 11.1 21 148-168 72-92 (215)
64 2nz2_A Argininosuccinate synth 65.6 57 0.0019 28.9 10.8 37 40-80 4-40 (413)
65 1k92_A Argininosuccinate synth 64.3 82 0.0028 28.3 12.6 37 40-80 9-45 (455)
66 2oq2_A Phosphoadenosine phosph 61.6 63 0.0021 26.4 9.8 40 41-81 41-80 (261)
67 2ywb_A GMP synthase [glutamine 61.2 38 0.0013 30.8 9.1 35 42-80 210-244 (503)
68 1vbk_A Hypothetical protein PH 61.1 74 0.0025 26.8 11.0 33 41-78 179-211 (307)
69 1g63_A Epidermin modifying enz 60.0 8.9 0.00031 30.0 4.0 113 41-199 2-114 (181)
70 2dpl_A GMP synthetase, GMP syn 59.7 27 0.00094 29.5 7.4 36 42-80 21-56 (308)
71 2e0i_A 432AA long hypothetical 58.6 12 0.00042 33.5 5.2 117 49-200 10-126 (440)
72 2ejb_A Probable aromatic acid 58.6 14 0.00047 29.2 4.9 34 42-76 2-35 (189)
73 1v6t_A Hypothetical UPF0271 pr 55.0 88 0.003 25.8 9.5 129 39-198 26-163 (255)
74 4ds3_A Phosphoribosylglycinami 53.3 84 0.0029 25.0 11.6 20 148-167 76-95 (209)
75 3rjz_A N-type ATP pyrophosphat 52.5 93 0.0032 25.3 9.3 93 42-167 5-99 (237)
76 2hma_A Probable tRNA (5-methyl 52.2 73 0.0025 27.7 9.0 36 41-80 9-44 (376)
77 2wsi_A FAD synthetase; transfe 51.9 80 0.0027 26.6 9.0 39 42-80 54-110 (306)
78 3k32_A Uncharacterized protein 51.7 21 0.00073 28.0 5.1 38 39-80 4-41 (203)
79 1xw8_A UPF0271 protein YBGL; N 50.5 95 0.0033 25.5 8.7 126 42-198 24-158 (252)
80 2h31_A Multifunctional protein 50.3 36 0.0012 30.4 6.7 67 124-201 283-353 (425)
81 3h5i_A Response regulator/sens 50.0 63 0.0022 22.6 8.6 51 145-202 37-88 (140)
82 1p3y_1 MRSD protein; flavoprot 48.6 18 0.00061 28.6 4.1 117 39-200 6-123 (194)
83 1nu0_A Hypothetical protein YQ 48.4 10 0.00035 28.3 2.4 53 146-201 41-97 (138)
84 3fy4_A 6-4 photolyase; DNA rep 48.4 36 0.0012 31.4 6.6 99 49-167 14-112 (537)
85 3tqi_A GMP synthase [glutamine 48.3 40 0.0014 30.9 6.9 36 42-80 231-266 (527)
86 3f6p_A Transcriptional regulat 47.7 63 0.0022 21.9 8.2 48 147-201 35-82 (120)
87 1kor_A Argininosuccinate synth 46.9 1.4E+02 0.0049 26.1 10.1 36 42-80 1-36 (400)
88 3da8_A Probable 5'-phosphoribo 46.7 97 0.0033 24.7 8.3 34 40-75 11-44 (215)
89 2qv7_A Diacylglycerol kinase D 45.0 39 0.0013 28.7 6.0 67 127-202 49-116 (337)
90 2dfa_A Hypothetical UPF0271 pr 45.0 86 0.003 25.8 7.7 128 40-198 27-163 (250)
91 2o8v_A Phosphoadenosine phosph 43.9 1.3E+02 0.0043 24.3 9.2 35 42-80 46-80 (252)
92 1sbz_A Probable aromatic acid 43.4 35 0.0012 27.0 5.0 35 42-76 1-35 (197)
93 4hb7_A Dihydropteroate synthas 43.0 1.4E+02 0.0049 24.7 9.0 49 148-206 91-139 (270)
94 3hly_A Flavodoxin-like domain; 42.2 58 0.002 24.3 6.0 42 126-170 22-63 (161)
95 1o97_D Electron transferring f 42.1 1.4E+02 0.0048 25.3 9.0 27 51-78 15-42 (320)
96 2bon_A Lipid kinase; DAG kinas 41.6 56 0.0019 27.7 6.5 67 127-202 51-120 (332)
97 1vhx_A Putative holliday junct 41.6 9.8 0.00033 28.8 1.4 57 145-201 42-99 (150)
98 3glc_A Aldolase LSRF; TIM barr 41.5 1.4E+02 0.0049 25.0 8.9 62 125-199 163-230 (295)
99 3f6c_A Positive transcription 41.5 83 0.0028 21.5 8.3 45 150-201 38-83 (134)
100 1qzu_A Hypothetical protein MD 41.4 23 0.00079 28.2 3.7 37 40-76 18-54 (206)
101 3gxq_A Putative regulator of t 41.1 29 0.001 20.3 3.1 29 133-161 9-37 (54)
102 3auf_A Glycinamide ribonucleot 41.1 1.4E+02 0.0047 24.0 12.7 21 147-167 90-110 (229)
103 2j4d_A Cryptochrome 3, cryptoc 40.9 2.1E+02 0.0071 26.0 13.8 132 42-201 40-175 (525)
104 3cg0_A Response regulator rece 40.6 88 0.003 21.6 8.3 49 147-201 43-91 (140)
105 2pg3_A Queuosine biosynthesis 40.0 1.4E+02 0.0046 23.6 11.4 35 42-80 3-37 (232)
106 3mcu_A Dipicolinate synthase, 39.8 26 0.0009 28.0 3.8 37 39-76 3-40 (207)
107 3p9x_A Phosphoribosylglycinami 38.3 1.5E+02 0.0051 23.5 11.4 36 41-77 2-37 (211)
108 2der_A TRNA-specific 2-thiouri 37.9 2E+02 0.0068 24.9 11.1 36 40-79 16-51 (380)
109 2amj_A Modulator of drug activ 37.2 87 0.003 24.4 6.6 40 127-168 41-80 (204)
110 3s40_A Diacylglycerol kinase; 37.1 62 0.0021 27.0 6.0 63 130-202 36-99 (304)
111 3lqk_A Dipicolinate synthase s 35.0 36 0.0012 27.0 3.9 35 40-75 6-41 (201)
112 2qxy_A Response regulator; reg 34.8 1.1E+02 0.0039 21.1 7.8 47 147-201 37-84 (142)
113 2x5e_A UPF0271 protein PA4511; 34.0 1.3E+02 0.0044 24.7 7.0 130 40-197 33-171 (252)
114 1ccw_A Protein (glutamate muta 33.9 64 0.0022 23.5 4.9 62 130-198 28-91 (137)
115 2ywr_A Phosphoribosylglycinami 33.8 1.7E+02 0.006 23.0 11.3 20 148-167 70-89 (216)
116 2i2x_B MTAC, methyltransferase 33.1 1.3E+02 0.0043 24.5 7.1 64 129-199 147-211 (258)
117 1vl2_A Argininosuccinate synth 32.4 2.6E+02 0.0091 24.7 10.1 37 40-80 13-49 (421)
118 3kht_A Response regulator; PSI 32.3 1.3E+02 0.0043 20.9 8.4 48 147-201 40-90 (144)
119 2gkg_A Response regulator homo 32.1 1.1E+02 0.0039 20.3 7.3 46 147-198 38-86 (127)
120 3pm6_A Putative fructose-bisph 32.1 29 0.00098 29.6 2.9 67 130-199 23-89 (306)
121 3snk_A Response regulator CHEY 31.1 1.1E+02 0.0036 21.1 5.7 44 151-201 52-96 (135)
122 3n0r_A Response regulator; sig 30.6 1.5E+02 0.0052 24.2 7.3 49 146-201 194-242 (286)
123 3eod_A Protein HNR; response r 30.4 1.3E+02 0.0044 20.4 8.4 48 147-201 40-88 (130)
124 3fni_A Putative diflavin flavo 29.6 1.1E+02 0.0039 22.6 5.8 41 127-170 27-68 (159)
125 2yxb_A Coenzyme B12-dependent 29.4 57 0.002 24.6 4.1 61 132-199 45-107 (161)
126 1s8n_A Putative antiterminator 29.2 1.8E+02 0.0062 21.8 8.2 47 147-200 47-93 (205)
127 3i42_A Response regulator rece 29.1 1.3E+02 0.0045 20.2 9.0 49 147-202 36-87 (127)
128 4dad_A Putative pilus assembly 29.1 1.2E+02 0.004 21.2 5.7 49 146-201 54-104 (146)
129 4e7p_A Response regulator; DNA 28.7 1.5E+02 0.0052 20.7 8.7 48 147-201 55-103 (150)
130 3ecs_A Translation initiation 28.4 2.7E+02 0.0093 23.5 8.7 62 128-201 167-232 (315)
131 1y80_A Predicted cobalamin bin 28.3 64 0.0022 25.2 4.3 37 131-169 114-150 (210)
132 3tqr_A Phosphoribosylglycinami 28.2 2.2E+02 0.0077 22.5 11.3 21 147-167 72-92 (215)
133 2l69_A Rossmann 2X3 fold prote 28.0 1.5E+02 0.0051 20.4 6.5 21 44-64 54-74 (134)
134 1mvl_A PPC decarboxylase athal 27.8 70 0.0024 25.5 4.5 34 40-75 18-51 (209)
135 1e2b_A Enzyme IIB-cellobiose; 27.8 55 0.0019 22.9 3.5 40 41-80 3-42 (106)
136 1qv9_A F420-dependent methylen 27.7 85 0.0029 25.8 4.8 69 146-236 52-120 (283)
137 3qay_A Endolysin; amidase A/B 27.5 1.6E+02 0.0054 22.5 6.4 41 124-164 37-83 (180)
138 3iwt_A 178AA long hypothetical 27.2 1.1E+02 0.0038 23.1 5.5 39 126-165 46-88 (178)
139 2rjn_A Response regulator rece 26.8 1.7E+02 0.0057 20.6 7.7 48 147-201 40-88 (154)
140 3ayv_A Putative uncharacterize 26.7 1.8E+02 0.0063 22.7 7.0 24 54-77 74-97 (254)
141 2lpm_A Two-component response 26.6 1.1E+02 0.0036 21.9 4.9 46 147-200 42-87 (123)
142 3o1l_A Formyltetrahydrofolate 26.6 2.8E+02 0.0097 23.2 12.0 84 41-168 105-191 (302)
143 3to5_A CHEY homolog; alpha(5)b 26.5 1.8E+02 0.0061 20.9 7.0 47 148-201 47-96 (134)
144 2a0u_A Initiation factor 2B; S 25.8 1.3E+02 0.0043 26.4 6.1 63 128-200 232-298 (383)
145 1w2w_B 5-methylthioribose-1-ph 25.5 55 0.0019 25.7 3.4 63 131-200 28-93 (191)
146 2yvk_A Methylthioribose-1-phos 25.4 1.3E+02 0.0043 26.3 6.0 64 127-200 227-294 (374)
147 1v95_A Nuclear receptor coacti 25.3 2E+02 0.0067 21.0 6.1 43 125-167 27-70 (130)
148 2l69_A Rossmann 2X3 fold prote 25.2 1.1E+02 0.0038 21.0 4.4 38 130-167 47-84 (134)
149 3hzh_A Chemotaxis response reg 25.0 1.9E+02 0.0064 20.5 8.2 48 147-201 70-120 (157)
150 3qi7_A Putative transcriptiona 24.9 2E+02 0.0069 25.0 7.2 94 42-167 13-120 (371)
151 3l6u_A ABC-type sugar transpor 24.9 2.6E+02 0.0088 22.1 10.2 64 129-202 34-99 (293)
152 3rpe_A MDAB, modulator of drug 24.9 1.8E+02 0.0061 23.1 6.4 37 130-168 57-93 (218)
153 1t9k_A Probable methylthioribo 24.8 1.3E+02 0.0043 26.0 5.8 64 127-200 202-269 (347)
154 1gvf_A Tagatose-bisphosphate a 24.8 35 0.0012 28.7 2.2 67 132-201 16-83 (286)
155 3elf_A Fructose-bisphosphate a 24.8 63 0.0022 28.0 3.9 78 125-202 12-97 (349)
156 1gpm_A GMP synthetase, XMP ami 24.8 2.8E+02 0.0095 25.1 8.5 36 42-80 228-263 (525)
157 3nbm_A PTS system, lactose-spe 24.6 62 0.0021 22.8 3.2 55 132-201 33-87 (108)
158 3hv2_A Response regulator/HD d 24.1 1.9E+02 0.0065 20.3 8.1 48 147-201 47-95 (153)
159 3gt7_A Sensor protein; structu 24.1 1.9E+02 0.0066 20.4 8.6 48 147-201 40-90 (154)
160 3hdg_A Uncharacterized protein 24.0 1.2E+02 0.0042 20.7 4.9 48 147-201 40-88 (137)
161 3grc_A Sensor protein, kinase; 23.7 1.8E+02 0.0061 19.9 8.0 48 147-201 39-89 (140)
162 3n53_A Response regulator rece 23.5 1.8E+02 0.0063 19.9 6.4 48 147-201 35-85 (140)
163 2qr3_A Two-component system re 23.4 1.8E+02 0.0062 19.8 7.7 48 147-200 36-88 (140)
164 3l23_A Sugar phosphate isomera 23.3 1.6E+02 0.0055 24.2 6.2 25 52-76 104-128 (303)
165 2hy5_B Intracellular sulfur ox 23.1 53 0.0018 24.1 2.7 38 40-78 4-45 (136)
166 3rqi_A Response regulator prot 23.1 2.3E+02 0.0078 20.8 7.4 48 147-201 40-88 (184)
167 3o1i_D Periplasmic protein TOR 23.1 2.8E+02 0.0097 21.9 7.7 58 132-199 34-94 (304)
168 3dm5_A SRP54, signal recogniti 23.1 3.5E+02 0.012 24.0 8.6 25 149-173 173-197 (443)
169 2q5c_A NTRC family transcripti 23.1 2.6E+02 0.0089 21.5 8.7 34 133-166 117-150 (196)
170 1qkk_A DCTD, C4-dicarboxylate 23.0 2E+02 0.0068 20.2 6.4 48 147-201 36-84 (155)
171 2zay_A Response regulator rece 22.9 1.9E+02 0.0066 19.9 7.7 48 147-201 41-91 (147)
172 1meo_A Phosophoribosylglycinam 22.8 2.8E+02 0.0095 21.8 11.9 37 42-79 1-37 (209)
173 3qk7_A Transcriptional regulat 22.7 2.9E+02 0.01 22.0 10.0 63 128-201 35-97 (294)
174 3av3_A Phosphoribosylglycinami 22.6 2.8E+02 0.0096 21.7 11.4 20 148-167 72-91 (212)
175 2l2q_A PTS system, cellobiose- 22.5 1.5E+02 0.005 20.5 4.9 54 132-200 31-84 (109)
176 3lou_A Formyltetrahydrofolate 21.7 3.5E+02 0.012 22.5 12.3 84 41-168 95-181 (292)
177 3q94_A Fructose-bisphosphate a 21.7 47 0.0016 27.9 2.4 68 132-201 19-89 (288)
178 4aoy_A Isocitrate dehydrogenas 21.6 1E+02 0.0035 27.2 4.7 26 52-77 185-210 (402)
179 3cu5_A Two component transcrip 21.6 2.1E+02 0.0071 19.8 7.4 48 147-201 38-86 (141)
180 1y5e_A Molybdenum cofactor bio 21.6 1.5E+02 0.0051 22.3 5.2 32 132-164 43-78 (169)
181 5nul_A Flavodoxin; electron tr 21.5 1.7E+02 0.006 20.5 5.4 38 125-169 19-56 (138)
182 2is8_A Molybdopterin biosynthe 21.4 1.6E+02 0.0056 21.9 5.4 38 126-164 27-68 (164)
183 3obi_A Formyltetrahydrofolate 21.2 3.5E+02 0.012 22.4 9.8 36 40-76 88-123 (288)
184 3ouz_A Biotin carboxylase; str 21.1 1.9E+02 0.0064 25.3 6.4 36 39-79 4-39 (446)
185 2rdm_A Response regulator rece 21.0 2E+02 0.0067 19.3 9.2 50 147-202 38-89 (132)
186 3n0v_A Formyltetrahydrofolate 20.6 3.6E+02 0.012 22.3 12.7 84 41-168 90-176 (286)
187 2pju_A Propionate catabolism o 20.5 3.3E+02 0.011 21.7 8.1 34 133-166 129-162 (225)
188 3r89_A Orotidine 5'-phosphate 20.3 2.8E+02 0.0096 23.1 7.0 36 42-77 18-65 (290)
189 2qzj_A Two-component response 20.2 2.2E+02 0.0075 19.5 8.4 48 147-201 37-84 (136)
190 3l52_A Orotidine 5'-phosphate 20.1 1.3E+02 0.0046 25.1 4.9 36 42-77 23-68 (284)
191 1mio_B Nitrogenase molybdenum 20.1 4.5E+02 0.015 23.1 10.3 45 138-199 366-410 (458)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=2.3e-25 Score=173.63 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=116.8
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHH
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (259)
++++|||||+|+|+.+..|+++|+.+|+..+++|+++||.+........ .....+...+...+..
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 67 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA---------------LDPVLSELLDAEAAHA 67 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG---------------GHHHHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc---------------cccccHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999875432110 0001222333344445
Q ss_pred HHHHHHHhhhhhhCCc-cEEEEEEecCchHHHHHH-HHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 119 ATKAADLARPLKEAGF-PYKIHIVKDHDMRERLCL-EIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~Il~-~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
++.++++.+.+...|+ +++.++..|+ +.++|++ ++++.++||||||+++++.+.++ ++||++++|+++++||||
T Consensus 68 ~~~l~~~~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVl 143 (146)
T 3s3t_A 68 KDAMRQRQQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRV---AVGSTTSYVVDHAPCNVI 143 (146)
T ss_dssp HHHHHHHHHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTC---SSCHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceE---EEcchHHHHhccCCCCEE
Confidence 5556667777777799 9999999986 9999999 99999999999999999999999 999999999999999999
Q ss_pred EEe
Q 024982 197 VVR 199 (259)
Q Consensus 197 vV~ 199 (259)
+||
T Consensus 144 vV~ 146 (146)
T 3s3t_A 144 VIR 146 (146)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
No 2
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.93 E-value=8.2e-26 Score=198.21 Aligned_cols=176 Identities=14% Similarity=0.080 Sum_probs=136.7
Q ss_pred CCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 37 TSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 37 ~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
.|+++++|||++|+|+.+..|++||+.+|+..+++|+++|+.+.......... .....+.+.+...+
T Consensus 3 ~M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 69 (319)
T 3olq_A 3 AMEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLL-------------SPDERNAMRKGVIN 69 (319)
T ss_dssp --CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTS-------------CHHHHHHHHHHHHH
T ss_pred cccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhcccc-------------ChhhHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999865322111100 11122333334444
Q ss_pred HHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
..+++++++.+.+...|+++++.+.+.+++.++|++++++.++||||||+++++.+.+. ++||++++++++++|||+
T Consensus 70 ~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~---~~Gs~~~~vl~~~~~PVl 146 (319)
T 3olq_A 70 QKTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSL---IFTPLDWQLLRKCPAPVW 146 (319)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSC---BCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcc---cccccHHHHHhcCCCCEE
Confidence 45556677777777779999999995556999999999999999999999999999999 999999999999999999
Q ss_pred EEeCCCCCCCCCCeeeecCCCCCCcchhhhcc
Q 024982 197 VVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRK 228 (259)
Q Consensus 197 vV~~~~~~~~~~~l~av~~~~~~~~~~~~~~~ 228 (259)
+||...+...+++++++|.+.+.+..+..+.+
T Consensus 147 vv~~~~~~~~~~Ilva~D~s~~~~~~~~~s~~ 178 (319)
T 3olq_A 147 MVKDKEWPEYGTIVVAANLSNEESYHDALNLK 178 (319)
T ss_dssp EEESSCCCTTCEEEEECCCSCCSTHHHHHHHH
T ss_pred EecCcccccCCeEEEEECCCCcchhHHHHHHH
Confidence 99988777788999999988765433333333
No 3
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.93 E-value=1.5e-24 Score=172.25 Aligned_cols=154 Identities=23% Similarity=0.232 Sum_probs=114.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcc---cCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVL---FGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
+++|||||+|+|+.+..|+++|..+|+..+++|+++||.+.... ....+.......... .....+.+.+...+
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 79 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS----VEEFENELKNKLTE 79 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC---------------------CHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc----hhhhHHHHHHHHHH
Confidence 57999999999999999999999999999999999999875310 000000000000000 00001122233334
Q ss_pred HHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
..++.++++.+.+...|++++.++..|+ +.++|++++++.++||||||+++++.+.++ ++||++++|+++++|||+
T Consensus 80 ~~~~~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~---~~GSv~~~vl~~~~~pVl 155 (162)
T 1mjh_A 80 EAKNKMENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEI---LLGSVTENVIKKSNKPVL 155 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTC---SSCHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEcCCC-HHHHHHHHHHHcCCCEEEEcCCCCCCccce---EecchHHHHHHhCCCCEE
Confidence 4444556666666777999999988875 999999999999999999999999999999 999999999999999999
Q ss_pred EEeCC
Q 024982 197 VVRYP 201 (259)
Q Consensus 197 vV~~~ 201 (259)
+||++
T Consensus 156 vv~~~ 160 (162)
T 1mjh_A 156 VVKRK 160 (162)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 99864
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.92 E-value=1e-24 Score=174.65 Aligned_cols=154 Identities=19% Similarity=0.091 Sum_probs=109.6
Q ss_pred CCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccc---cccchhhhHHHHHHHHHHH
Q 024982 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQ---INSENASNIEHQKQLEDDF 114 (259)
Q Consensus 38 ~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~ 114 (259)
|.+++|||||+|+++.+..|+++|..+|+..+++|+++||.+........ ...+... ........+. .
T Consensus 2 ~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~ 72 (170)
T 2dum_A 2 IFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELM-DGYSFFYDNAEIELKDIKEK--------L 72 (170)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC-------------CCTTSHHH--------H
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-cccccccccccccHHHHHHH--------H
Confidence 44789999999999999999999999999999999999998764321100 0000000 0000011111 1
Q ss_pred HHHHHHHHHHHhhhhhhCCccEEE--EEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC
Q 024982 115 DTFTATKAADLARPLKEAGFPYKI--HIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV 192 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~v~v~~--~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~ 192 (259)
.+..++.++++.+.+...|++++. .+..|+ +.++|++++++.++||||||+++++.+.++ ++||++++|+++++
T Consensus 73 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~-~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~---~~Gsv~~~vl~~~~ 148 (170)
T 2dum_A 73 KEEASRKLQEKAEEVKRAFRAKNVRTIIRFGI-PWDEIVKVAEEENVSLIILPSRGKLSLSHE---FLGSTVMRVLRKTK 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCCCC--TT---CCCHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHcCCceeeeeEEecCC-hHHHHHHHHHHcCCCEEEECCCCCCccccc---eechHHHHHHHhCC
Confidence 122222344444555555888887 778775 999999999999999999999999999999 99999999999999
Q ss_pred ccEEEEeCCCCC
Q 024982 193 CPVVVVRYPDDK 204 (259)
Q Consensus 193 ~PVlvV~~~~~~ 204 (259)
||||+||...+.
T Consensus 149 ~PVlvv~~~~~~ 160 (170)
T 2dum_A 149 KPVLIIKEVDEN 160 (170)
T ss_dssp SCEEEECCCCCC
T ss_pred CCEEEEccCCcc
Confidence 999999976443
No 5
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.92 E-value=3.6e-24 Score=165.42 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=111.5
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHh-CCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHH-HHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHY-LRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD-TFT 118 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA-~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 118 (259)
++|||||+|+|+.+..|+++|..+| +..+++|+++||.+....... .........+... +..
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 64 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE----------------AVLAAYDEIEMKEEEKA 64 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc----------------cccCcHHHHHHHHHHHH
Confidence 5899999999999999999999999 999999999999987532110 0001112223333 445
Q ss_pred HHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
++.++++.+.+...|++++..+..|+ +.++|+++++ ++||||||+++++.+.++ + ||++++|+++++||||+|
T Consensus 65 ~~~l~~~~~~~~~~g~~~~~~v~~g~-~~~~I~~~a~--~~dliV~G~~~~~~~~~~---~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 65 KLLTQKFSTFFTEKGINPFVVIKEGE-PVEMVLEEAK--DYNLLIIGSSENSFLNKI---F-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEESC-HHHHHHHHHT--TCSEEEEECCTTSTTSSC---C-CCTTCHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCC-hHHHHHHHHh--cCCEEEEeCCCcchHHHH---h-CcHHHHHHhcCCCCEEEe
Confidence 55566677777778999999999986 9999999999 899999999999999998 8 999999999999999999
Q ss_pred e
Q 024982 199 R 199 (259)
Q Consensus 199 ~ 199 (259)
|
T Consensus 138 ~ 138 (138)
T 3idf_A 138 K 138 (138)
T ss_dssp C
T ss_pred C
Confidence 7
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.92 E-value=6.7e-24 Score=167.50 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=110.8
Q ss_pred CCCCCeEEEeec--CChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHH
Q 024982 38 SLARRKIGVAVD--LSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD 115 (259)
Q Consensus 38 ~~~~~rILVavD--~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (259)
+++++|||||+| +|+.+..|+++|..+|+..+++|+++||.+....... ... ... ..+...
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--~~~-----------~~~----~~~~~~ 74 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF--DSL-----------TPS----KIQAKR 74 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC--CSS-----------HHH----HHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc--ccC-----------CHH----HHHHHH
Confidence 457899999999 9999999999999999999999999999987543111 100 111 122223
Q ss_pred HHHHHHHHHHhhhhhhCCc-cEEEEEEecCchHHHHHHH-HHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCc
Q 024982 116 TFTATKAADLARPLKEAGF-PYKIHIVKDHDMRERLCLE-IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~Il~~-a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~ 193 (259)
+..++.++++.+.+...|+ .++..+..++++.++|+++ +++.++||||||+++++.++ . ++||++++|+++++|
T Consensus 75 ~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~---~~Gs~~~~vl~~a~~ 150 (156)
T 3fg9_A 75 KHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K---IAGAIGPRLARKAPI 150 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S---SCSCHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-e---eecchHHHHHHhCCC
Confidence 3334445555566666688 5899999834599999999 99999999999999999986 6 899999999999999
Q ss_pred cEEEEe
Q 024982 194 PVVVVR 199 (259)
Q Consensus 194 PVlvV~ 199 (259)
||++||
T Consensus 151 PVlvV~ 156 (156)
T 3fg9_A 151 SVIVVR 156 (156)
T ss_dssp EEEEEC
T ss_pred CEEEeC
Confidence 999996
No 7
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.92 E-value=5.5e-24 Score=166.65 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=96.3
Q ss_pred CCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 37 TSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 37 ~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
.|++++|||||+|+|+.+..|+++|+.+|+..+++|+++||.+........+...... ...+..+...+..++
T Consensus 2 ~m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---- 74 (150)
T 3tnj_A 2 HMSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPL---DTETTYDAMLDVEKQ---- 74 (150)
T ss_dssp --CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCS---SSCCCHHHHHHHHHH----
T ss_pred CCCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCc---CHHHHHHHHHHHHHH----
Confidence 3678999999999999999999999999999999999999997643210011111000 001112222222222
Q ss_pred HHHHHHHHHhhhhhhCCcc-EEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 117 FTATKAADLARPLKEAGFP-YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
. ++++++.+ ++. ++..+..|+ +.++|++++++.++||||||+++++.+. . ++||++++|+++++|||
T Consensus 75 ~----l~~~~~~~---~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~-~---~~Gs~~~~vl~~~~~pV 142 (150)
T 3tnj_A 75 K----LSQIGNTL---GIDPAHRWLVWGE-PREEIIRIAEQENVDLIVVGSHGRHGLA-L---LLGSTANSVLHYAKCDV 142 (150)
T ss_dssp H----HHHHHHHH---TCCGGGEEEEESC-HHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEE
T ss_pred H----HHHHHHHc---CCCcceEEEecCC-HHHHHHHHHHHcCCCEEEEecCCCCCcC-e---EecchHHHHHHhCCCCE
Confidence 1 22222222 444 456677775 9999999999999999999999999999 9 99999999999999999
Q ss_pred EEEeCCC
Q 024982 196 VVVRYPD 202 (259)
Q Consensus 196 lvV~~~~ 202 (259)
++||++.
T Consensus 143 lvv~~~~ 149 (150)
T 3tnj_A 143 LAVRLRD 149 (150)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999753
No 8
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.91 E-value=3.7e-24 Score=166.81 Aligned_cols=144 Identities=20% Similarity=0.240 Sum_probs=108.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+++|||||+|+|+.+..|+++|+.+|+..+++|+++||.+............+....+ ...+... +..+
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~ 69 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLD---IPDDALK--------DYAT 69 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGC---CCTTHHH--------HHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhh---hHHHHHH--------HHHH
Confidence 4799999999999999999999999999999999999998643111000000000000 0011111 1222
Q ss_pred HHHHHHhhhhhhCCccE---EEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 120 TKAADLARPLKEAGFPY---KIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v---~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
+.++++.+.+...|+++ +..+..|+ +.++|++++++.++||||||+++++.+.++ ++||++++++++++|||+
T Consensus 70 ~~l~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVl 145 (147)
T 3hgm_A 70 EIAVQAKTRATELGVPADKVRAFVKGGR-PSRTIVRFARKRECDLVVIGAQGTNGDKSL---LLGSVAQRVAGSAHCPVL 145 (147)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEECSSCTTCCSCC---CCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHhcCCCccceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCccccce---eeccHHHHHHhhCCCCEE
Confidence 23444555556668877 88888885 999999999999999999999999999999 999999999999999999
Q ss_pred EE
Q 024982 197 VV 198 (259)
Q Consensus 197 vV 198 (259)
+|
T Consensus 146 vV 147 (147)
T 3hgm_A 146 VV 147 (147)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 9
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.91 E-value=4.3e-24 Score=185.28 Aligned_cols=160 Identities=13% Similarity=0.168 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChh-------HHHHHHHHHHHhCCCCCEEEEEE
Q 024982 4 QQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDE-------SAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 4 ~~~~~~~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~-------s~~al~~A~~lA~~~~a~l~llh 76 (259)
++++.++++++|||++++..... .++|||||+|+|+. +..|+++|..+|+..+++|+++|
T Consensus 110 s~~~~vl~~~~~PVlvv~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~ 176 (290)
T 3mt0_A 110 PDDWKLLRFAPCPVLMTKTARPW-------------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVIS 176 (290)
T ss_dssp HHHHHHHHHCSSCEEEECCCSCS-------------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhcCCCCEEEecCCCCC-------------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34567889999999999843111 56999999999998 99999999999999999999999
Q ss_pred EecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhCCcc-EEEEEEecCchHHHHHHHHH
Q 024982 77 VSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFP-YKIHIVKDHDMRERLCLEIE 155 (259)
Q Consensus 77 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~Il~~a~ 155 (259)
|++....... .. .....+..++... +.++++.+.+ |+. ++..+..|+ +.++|+++++
T Consensus 177 v~~~~~~~~~------~~--------~~~~~~~~~~~~~----~~l~~~~~~~---g~~~~~~~v~~g~-~~~~I~~~a~ 234 (290)
T 3mt0_A 177 AHPSPMLSSA------DP--------TFQLSETIEARYR----EACRTFQAEY---GFSDEQLHIEEGP-ADVLIPRTAQ 234 (290)
T ss_dssp EEC-----------------------CHHHHHHHHHHHH----HHHHHHHHHH---TCCTTTEEEEESC-HHHHHHHHHH
T ss_pred EecCcccccc------Cc--------hhHHHHHHHHHHH----HHHHHHHHHc---CCCcceEEEeccC-HHHHHHHHHH
Confidence 9987532110 00 0011111222222 2222232222 553 456677775 9999999999
Q ss_pred hcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 156 RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 156 ~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
+.++||||||+++++++.++ ++||++++|+++++||||+||+.
T Consensus 235 ~~~~dLiVmG~~g~~~~~~~---~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 235 KLDAVVTVIGTVARTGLSGA---LIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp HHTCSEEEEECCSSCCGGGC---CSCHHHHHHHTTCSSEEEEECCH
T ss_pred hcCCCEEEECCCCCcCCcce---ecchHHHHHHhcCCCCEEEECCC
Confidence 99999999999999999999 99999999999999999999864
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.91 E-value=8.3e-24 Score=163.40 Aligned_cols=136 Identities=22% Similarity=0.185 Sum_probs=101.7
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+++|||||+|+|+.+..|+++|..+|+..+++|+++||.++... .+.... .+...+..++ ..+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~---~~~~~~----------~~~~~~~~~~----~~~ 63 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD---YLGEPF----------FEEALRRRLE----RAE 63 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC---------------------------CHHHH----HHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc---cccccc----------hHHHHHHHHH----HHH
Confidence 36999999999999999999999999999999999999874321 000000 0000111111 122
Q ss_pred HHHHHHhhhhhhCCc-cEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 120 TKAADLARPLKEAGF-PYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
+.++++.+. .|+ +++.++..|+ +.++|++++++.++||||||+++++.+.++ ++||++++|+++++|||++|
T Consensus 64 ~~l~~~~~~---~g~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 64 GVLEEARAL---TGVPKEDALLLEGV-PAEAILQAARAEKADLIVMGTRGLGALGSL---FLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHHHH---HCCCGGGEEEEESS-HHHHHHHHHHHTTCSEEEEESSCTTCCSCS---SSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHH---cCCCccEEEEEecC-HHHHHHHHHHHcCCCEEEECCCCCchhhhh---hhccHHHHHHhcCCCCEEEe
Confidence 222223222 377 7777777775 999999999999999999999999999999 99999999999999999999
Q ss_pred e
Q 024982 199 R 199 (259)
Q Consensus 199 ~ 199 (259)
|
T Consensus 137 ~ 137 (137)
T 2z08_A 137 R 137 (137)
T ss_dssp C
T ss_pred C
Confidence 6
No 11
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.91 E-value=6e-24 Score=169.71 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=106.5
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE--EEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV--HVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll--hV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
..++|||||+|+|+.+..|+++|+.+|+ .+++|+++ ||.+...... . .... . +.+.+...+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~-~---~~~~--------~----~~~~~~~~~ 77 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA-A---DILK--------D----ESYKVTGTA 77 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------------CC
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc-c---cccc--------c----HHHHHHHHH
Confidence 3679999999999999999999999999 99999999 8776532100 0 0000 0 011111122
Q ss_pred HHHHHHHHHhhhhhhCCcc-EEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 117 FTATKAADLARPLKEAGFP-YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
..++.++++.+.+...|++ ++..+..|+ +.++|++++++.++||||||+++++.+.++ ++||++++|+++++|||
T Consensus 78 ~~~~~l~~~~~~~~~~gv~~v~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---~lGSva~~vl~~a~~PV 153 (163)
T 1tq8_A 78 PIYEILHDAKERAHNAGAKNVEERPIVGA-PVDALVNLADEEKADLLVVGNVGLSTIAGR---LLGSVPANVSRRAKVDV 153 (163)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEECSS-HHHHHHHHHHHTTCSEEEEECCCCCSHHHH---HTBBHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEecCC-HHHHHHHHHHhcCCCEEEECCCCCCcccce---eeccHHHHHHHhCCCCE
Confidence 2233344455556666888 999888886 999999999999999999999999999999 99999999999999999
Q ss_pred EEEeCCC
Q 024982 196 VVVRYPD 202 (259)
Q Consensus 196 lvV~~~~ 202 (259)
++||++.
T Consensus 154 lvV~~~~ 160 (163)
T 1tq8_A 154 LIVHTTE 160 (163)
T ss_dssp EEECCC-
T ss_pred EEEeCCC
Confidence 9999654
No 12
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.91 E-value=7.3e-24 Score=167.86 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=106.2
Q ss_pred CCCCCeEEEeecC-ChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 38 SLARRKIGVAVDL-SDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 38 ~~~~~rILVavD~-s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
.+++++||||+|+ |+.+..|+++|+.+|+..+++|+++||.+..... .+...+
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~------------------~~~~~~-------- 74 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT------------------KDEDII-------- 74 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS------------------CHHHHH--------
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc------------------cHHHHH--------
Confidence 4578999999999 9999999999999999999999999998754210 111111
Q ss_pred HHHHHHHHHhhhhhhCCccEEEEE-EecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 117 FTATKAADLARPLKEAGFPYKIHI-VKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~v~~~v-~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
..++.++++.+.+...+++++... +..+++.++|++++++.++||||||+++++.+.++ ++||++++|+++++|||
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---~lGSv~~~vl~~a~~PV 151 (155)
T 3dlo_A 75 EAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL---IFGSVARDVILKANKPV 151 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE---ECCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE---EeccHHHHHHHhCCCCE
Confidence 122223445555566678777654 33445999999999999999999999999999999 99999999999999999
Q ss_pred EEEe
Q 024982 196 VVVR 199 (259)
Q Consensus 196 lvV~ 199 (259)
++||
T Consensus 152 LvVr 155 (155)
T 3dlo_A 152 ICIK 155 (155)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9996
No 13
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.90 E-value=3.2e-23 Score=166.78 Aligned_cols=150 Identities=22% Similarity=0.361 Sum_probs=100.9
Q ss_pred CCCeEEEeecCCh---------hHHHHHHHHHHHhCC---CCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHH
Q 024982 40 ARRKIGVAVDLSD---------ESAFAVRWAVHHYLR---PGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQ 107 (259)
Q Consensus 40 ~~~rILVavD~s~---------~s~~al~~A~~lA~~---~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (259)
.++|||||+|+|+ .+..|++||+.++.+ .+++|+++||.+............ . . .....
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~-~---~-----~~~~~ 74 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSI-Y---A-----SPEDF 74 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CC-C---C-----SHHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccc-c---C-----CHHHH
Confidence 5699999999999 999999999998744 589999999986532110000000 0 0 01111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHH
Q 024982 108 KQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYC 187 (259)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~l 187 (259)
+.+.+...+..++.++++.+.+...|++++.++..|+ +.++|++++++.++||||||+++++.+.++ ++||++++|
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~---~~Gsva~~v 150 (175)
T 2gm3_A 75 RDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGD-PKDVICQEVKRVRPDFLVVGSRGLGRFQKV---FVGTVSAFC 150 (175)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESC-HHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCChhhhh---hcCchHHHH
Confidence 1111122222333445555556666899999888886 999999999999999999999999999999 999999999
Q ss_pred hhcCCccEEEEeCCC
Q 024982 188 VHHCVCPVVVVRYPD 202 (259)
Q Consensus 188 l~~s~~PVlvV~~~~ 202 (259)
+++++||||+||...
T Consensus 151 l~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 151 VKHAECPVMTIKRNA 165 (175)
T ss_dssp HHHCSSCEEEEECCG
T ss_pred HhCCCCCEEEEcCCc
Confidence 999999999999754
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=4e-24 Score=187.45 Aligned_cols=166 Identities=16% Similarity=0.113 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCCh-------hHHHHHHHHHHHhCCC--CCEEEE
Q 024982 4 QQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSD-------ESAFAVRWAVHHYLRP--GDAVIL 74 (259)
Q Consensus 4 ~~~~~~~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~-------~s~~al~~A~~lA~~~--~a~l~l 74 (259)
++++.++++++|||++++....+ .+++||||+|+++ .+..++++|..+|+.. +++|++
T Consensus 132 s~~~~vl~~~~~PVlvv~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~l 198 (319)
T 3olq_A 132 PLDWQLLRKCPAPVWMVKDKEWP-------------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHL 198 (319)
T ss_dssp HHHHHHHHHCSSCEEEEESSCCC-------------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEE
T ss_pred ccHHHHHhcCCCCEEEecCcccc-------------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 34567889999999999855322 5799999999999 5799999999999988 999999
Q ss_pred EEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhCCc-cEEEEEEecCchHHHHHHH
Q 024982 75 VHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGF-PYKIHIVKDHDMRERLCLE 153 (259)
Q Consensus 75 lhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~Il~~ 153 (259)
+||++....... ...+ . .. .....+...+ ...+.++.+.+. .++ .++.++..|+ +.++|+++
T Consensus 199 l~v~~~~~~~~~--~~~~--~-~~----~~~~~~~~~~----~~~~~l~~~~~~---~~~~~~~~~v~~g~-~~~~I~~~ 261 (319)
T 3olq_A 199 LSAYPVAPINIA--IELP--D-FD----PNLYNNALRG----QHLIAMKELRQK---FSIPEEKTHVKEGL-PEQVIPQV 261 (319)
T ss_dssp EEEECCCSCSCC--TTCT--T-CC----HHHHHHHHHH----HHHHHHHHHHHH---TTCCGGGEEEEESC-HHHHHHHH
T ss_pred EEeecCcchhhh--ccCC--c-cc----HHHHHHHHHH----HHHHHHHHHHHH---hCCCcccEEEecCC-cHHHHHHH
Confidence 999987543211 0000 0 00 1111122222 222223333332 243 3456667775 89999999
Q ss_pred HHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 154 IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 154 a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
+++.++||||||+++++++.++ ++||++++|+++++||||+||+..
T Consensus 262 a~~~~~dLiV~G~~g~~~~~~~---~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 262 CEELNAGIVVLGILGRTGLSAA---FLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHTTEEEEEEECCSCCSTHHH---HHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHhCCCEEEEeccCccCCccc---cccHHHHHHHhhCCCCEEEECCCC
Confidence 9999999999999999999999 999999999999999999999765
No 15
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.90 E-value=1.6e-23 Score=181.77 Aligned_cols=154 Identities=17% Similarity=0.164 Sum_probs=125.7
Q ss_pred CCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHH
Q 024982 37 TSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (259)
Q Consensus 37 ~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (259)
.|+++++|||++|+|+.+..|++||+.+|+..+++|+++|+.++.. . .+.++
T Consensus 3 ~M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~--------------------~---~~~l~----- 54 (290)
T 3mt0_A 3 AMQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD--------------------H---SAALN----- 54 (290)
T ss_dssp TTTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC--------------------C---HHHHH-----
T ss_pred hhhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH--------------------H---HHHHH-----
Confidence 4678999999999999999999999999999999999999986310 1 11222
Q ss_pred HHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
++.+.+...|++++..+.+++++.++|++++++.++||||||+++++.+.+. ++||++++++++++|||+
T Consensus 55 -------~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~---~~gs~~~~vl~~~~~PVl 124 (290)
T 3mt0_A 55 -------DLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA---ILTPDDWKLLRFAPCPVL 124 (290)
T ss_dssp -------HHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT---SCCHHHHHHHHHCSSCEE
T ss_pred -------HHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhc---ccCHHHHHHHhcCCCCEE
Confidence 2233334568999999997777999999999999999999999999999999 999999999999999999
Q ss_pred EEeCCCCCCCCCCeeeecCCCCCCcchhhhcc
Q 024982 197 VVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRK 228 (259)
Q Consensus 197 vV~~~~~~~~~~~l~av~~~~~~~~~~~~~~~ 228 (259)
+||+.......++++++|.+..+++..+++.+
T Consensus 125 vv~~~~~~~~~~Ilva~D~s~~~~~~~~~s~~ 156 (290)
T 3mt0_A 125 MTKTARPWTGGKILAAVDVGNNDGEHRSLHAG 156 (290)
T ss_dssp EECCCSCSTTCEEEEEECTTCCSHHHHHHHHH
T ss_pred EecCCCCCCCCeEEEEECCCCcchhhhHHHHH
Confidence 99954333788999999988775433333333
No 16
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.90 E-value=2.5e-23 Score=161.48 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=102.7
Q ss_pred CeEEEeecCChh--HHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDE--SAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 42 ~rILVavD~s~~--s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+|||||+|+|+. +..|+++|..+|+..+++|+++||.+............ ... .+.. +...+...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~-----------~~~-~~~~-~~~~~~~~ 68 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAY-----------TAE-LPGM-DELREGSE 68 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------------------CH-HHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccc-----------cch-hhhH-HHHHHHHH
Confidence 799999999999 99999999999999999999999998753211100000 000 0001 11111222
Q ss_pred HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.++++++.+...++.++..+..|+ +.++|++++++.++||||||+++ +++.++ ++||++++|+++++|||++||
T Consensus 69 ~~l~~~~~~~~~~~~~v~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~-~~~~~~---~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 69 TQLKEIAKKFSIPEDRMHFHVAEGS-PKDKILALAKSLPADLVIIASHR-PDITTY---LLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHHHTTSCCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEEESSC-TTCCSC---SSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHcCCCCCceEEEEEecC-hHHHHHHHHHHhCCCEEEEeCCC-CCCeee---eeccHHHHHHHhCCCCEEEeC
Confidence 2344444444444567888888885 99999999999999999999995 888999 999999999999999999997
No 17
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=7.1e-24 Score=184.17 Aligned_cols=166 Identities=17% Similarity=0.117 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHH
Q 024982 31 AATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQL 110 (259)
Q Consensus 31 ~~~~~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (259)
.....++|++++|||||+|+|+.+..|++||+.+|+..+++|+++||.+.......... .. .....
T Consensus 12 ~~~~~~~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~-------~~----~~~~~--- 77 (294)
T 3loq_A 12 DLGTENLYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGG-------ID----IDHYI--- 77 (294)
T ss_dssp -----CCSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----C-------CC----TTHHH---
T ss_pred ccCcchHHHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccccc-------cc----HHHHH---
Confidence 33455678889999999999999999999999999999999999999987543211000 00 11111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhCCccEEE-EEE-ecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh
Q 024982 111 EDDFDTFTATKAADLARPLKEAGFPYKI-HIV-KDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV 188 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~v~-~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll 188 (259)
+...+..++.++++.+.+...|++++. .+. .|+ +.++| ++++.++||||||+++++.+.+. ++||++++++
T Consensus 78 -~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~-~~~~I--~a~~~~~DliV~G~~g~~~~~~~---~~Gs~~~~vl 150 (294)
T 3loq_A 78 -DEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGD-PVVEI--IKASENYSFIAMGSRGASKFKKI---LLGSVSEGVL 150 (294)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEEC-HHHHH--HHHHTTSSEEEEECCCCCHHHHH---HHCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCC-hhHhe--eeccCCCCEEEEcCCCCccccce---eeccHHHHHH
Confidence 222223334455566666667899888 777 555 89999 89999999999999999999999 9999999999
Q ss_pred hcCCccEEEEeCCC--CCCCCCCeeeecCCC
Q 024982 189 HHCVCPVVVVRYPD--DKDDGEPLVKVKEPE 217 (259)
Q Consensus 189 ~~s~~PVlvV~~~~--~~~~~~~l~av~~~~ 217 (259)
++++|||++||+.. +....++++++|.+.
T Consensus 151 ~~~~~PVlvv~~~~~~~~~~~~Ilv~~d~s~ 181 (294)
T 3loq_A 151 HDSKVPVYIFKHDMVVNSLFDRVLVAYDFSK 181 (294)
T ss_dssp HHCSSCEEEECCCTTTTCTTSEEEEECCSSH
T ss_pred hcCCCCEEEecCccccCccCCEEEEEECCCH
Confidence 99999999999875 366788999997663
No 18
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.89 E-value=1.6e-23 Score=181.89 Aligned_cols=149 Identities=20% Similarity=0.279 Sum_probs=123.7
Q ss_pred CCCCCCCCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcc
Q 024982 4 QQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVL 83 (259)
Q Consensus 4 ~~~~~~~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~ 83 (259)
++++.++++++|||++++..... ...+++||||+|+++.+..++++|..+|+..+++|+++||.+...
T Consensus 144 s~~~~vl~~~~~PVlvv~~~~~~-----------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~- 211 (294)
T 3loq_A 144 SVSEGVLHDSKVPVYIFKHDMVV-----------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD- 211 (294)
T ss_dssp CHHHHHHHHCSSCEEEECCCTTT-----------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-
T ss_pred cHHHHHHhcCCCCEEEecCcccc-----------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-
Confidence 45677899999999999855321 125699999999999999999999999999999999999987642
Q ss_pred cCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEE
Q 024982 84 FGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVI 163 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIV 163 (259)
. .+.+ +++.+.+...+++++..+..| ++.++|++++++.++||||
T Consensus 212 -------------------~---~~~l------------~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV 256 (294)
T 3loq_A 212 -------------------K---TADL------------RVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIF 256 (294)
T ss_dssp -------------------C---HHHH------------HHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEE
T ss_pred -------------------H---HHHH------------HHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEE
Confidence 0 1111 223333444588888888877 5999999999999999999
Q ss_pred EecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 164 MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 164 lG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
||+++++++.++ ++||++++++++++||||+||++.
T Consensus 257 ~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 257 MGSRGAGSVMTM---ILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp EECCCCSCHHHH---HHHCHHHHHHHHCSSCEEEECSCT
T ss_pred EeCCCCCCccce---eeCcHHHHHHhcCCCCEEEECCCC
Confidence 999999999999 999999999999999999999764
No 19
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.89 E-value=2.1e-23 Score=182.53 Aligned_cols=163 Identities=21% Similarity=0.215 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcc
Q 024982 4 QQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVL 83 (259)
Q Consensus 4 ~~~~~~~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~ 83 (259)
++++.++++++|||++++..... .....+++||||+|+++.+..++++|..+|+..+++|+++||++....
T Consensus 143 s~~~~vl~~~~~PVlvv~~~~~~---------~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~ 213 (309)
T 3cis_A 143 SVSSGLLRHAHCPVVIIHDEDSV---------MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDV 213 (309)
T ss_dssp HHHHHHHHHCSSCEEEECTTCCC---------SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCC
T ss_pred cHHHHHHHhCCCCEEEEcCCccc---------CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccc
Confidence 34677889999999999855321 001256899999999999999999999999999999999999876432
Q ss_pred cCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh--CCccEEEEEEecCchHHHHHHHHHhcCCcE
Q 024982 84 FGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKE--AGFPYKIHIVKDHDMRERLCLEIERLSLSA 161 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~v~v~~~v~~g~~~~~~Il~~a~~~~~dL 161 (259)
. . .+. .. .+. ..+..++. +++..+.+.. .+++++.++..|+ +.++|+++++ ++||
T Consensus 214 ~--~---~~~---~~----~~~----~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~adl 270 (309)
T 3cis_A 214 S--E---WPG---ID----WPA----TQSMAEQV----LAERLAGWQERYPNVAITRVVVRDQ-PARQLVQRSE--EAQL 270 (309)
T ss_dssp T--T---CSS---CC----HHH----HHHHHHHH----HHHHHTTHHHHCTTSCEEEEEESSC-HHHHHHHHHT--TCSE
T ss_pred c--C---CCc---cc----HHH----HHHHHHHH----HHHHHHHHHhhCCCCcEEEEEEcCC-HHHHHHHhhC--CCCE
Confidence 1 0 000 00 111 11111111 2223333322 4788888888775 9999999997 8999
Q ss_pred EEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 162 IVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
||||+++++++.++ ++||++++|+++++|||++||+.
T Consensus 271 iV~G~~~~~~~~~~---l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 271 VVVGSRGRGGYAGM---LVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp EEEESSCSSCCTTC---SSCHHHHHHHHHCSSCEEEECC-
T ss_pred EEECCCCCCCcccc---ccCcHHHHHHhcCCCCEEEeCCC
Confidence 99999999999999 99999999999999999999864
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.88 E-value=3.4e-22 Score=174.82 Aligned_cols=162 Identities=23% Similarity=0.239 Sum_probs=118.0
Q ss_pred CCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHH
Q 024982 35 TPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDF 114 (259)
Q Consensus 35 ~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (259)
.+....+++|||++|+|+.+..|++||+.+|+..+++|+++||.++... . +..... .....+..++..
T Consensus 13 ~~~~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-~--~~~~~~---------~~~~~~~~~~~~ 80 (309)
T 3cis_A 13 MSSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA-T--WLEVPL---------PPGVLRWQQDHG 80 (309)
T ss_dssp -----CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC-C--TTCCCC---------CHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc-c--cccCCC---------CchhhHHHHHHH
Confidence 3345578999999999999999999999999999999999999874321 1 100000 111111122222
Q ss_pred HHHHHHHHHHHhhhhhh-----CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh
Q 024982 115 DTFTATKAADLARPLKE-----AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH 189 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~-----~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~ 189 (259)
++.+++..+.+.. .+++++..+..|+ +.++|+++++ ++||||||+++++.+.++ ++||++++|++
T Consensus 81 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~~DliV~G~~g~~~~~~~---~~Gs~~~~vl~ 150 (309)
T 3cis_A 81 ----RHLIDDALKVVEQASLRAGPPTVHSEIVPAA-AVPTLVDMSK--DAVLMVVGCLGSGRWPGR---LLGSVSSGLLR 150 (309)
T ss_dssp ----HHHHHHHHHHHHHHCSSSCCSCEEEEEESSC-HHHHHHHHGG--GEEEEEEESSCTTCCTTC---CSCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhcccCCCceEEEEEecCC-HHHHHHHHhc--CCCEEEECCCCCcccccc---ccCcHHHHHHH
Confidence 2223333333333 2889999888876 9999999986 799999999999999999 99999999999
Q ss_pred cCCccEEEEeCCC----CCCCCCCeeeecCCCC
Q 024982 190 HCVCPVVVVRYPD----DKDDGEPLVKVKEPEK 218 (259)
Q Consensus 190 ~s~~PVlvV~~~~----~~~~~~~l~av~~~~~ 218 (259)
+++|||++||... +....++++++|.+..
T Consensus 151 ~~~~PVlvv~~~~~~~~~~~~~~Ilv~~D~s~~ 183 (309)
T 3cis_A 151 HAHCPVVIIHDEDSVMPHPQQAPVLVGVDGSSA 183 (309)
T ss_dssp HCSSCEEEECTTCCCSCSSCCCCEEEECCSSHH
T ss_pred hCCCCEEEEcCCcccCCCCCCCeEEEEeCCChH
Confidence 9999999999765 3456789999987643
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.88 E-value=4.7e-22 Score=170.18 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=121.5
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
+|||||+|+|+.+..|++||..+|+..+++|+++||.+.............. ...+. ....+...+...+..++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGA----LTVPV-PVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-----------CH-HHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchH----HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999998753211000000000 00000 000111122233344455
Q ss_pred HHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCC-cccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG-AEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~-~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
++++.+.+...|++++..+..|+ +.++|+++ +.++||||||+++++ .+.+. ++||++++++++++|||++||.
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g~-~~~~I~~~--~~~~dliV~G~~g~~~~~~~~---~~Gs~~~~v~~~a~~PVlvv~~ 149 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEGV-PHEAILRR--ARAADLLVLGRSGEAHGDGFG---GLGSTADRVLRASPVPVLLAPG 149 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEC-HHHHHHHH--HTTCSEEEEESSCTTSCTTCC---SCCHHHHHHHHHCSSCEEEECS
T ss_pred HHHHHHHHHhCCCCeEEEEecCC-HHHHHHhh--ccCCCEEEEeccCCCcccccc---ccchhHHHHHHhCCCCEEEECC
Confidence 66666667677999999988886 99999999 789999999999999 89999 9999999999999999999997
Q ss_pred CCCCCCCCCeeeecCCCC
Q 024982 201 PDDKDDGEPLVKVKEPEK 218 (259)
Q Consensus 201 ~~~~~~~~~l~av~~~~~ 218 (259)
... ...++++++|.+..
T Consensus 150 ~~~-~~~~ilv~~d~s~~ 166 (268)
T 3ab8_A 150 EPV-ELEGALLGYDASES 166 (268)
T ss_dssp SCC-CCCEEEEECCSCHH
T ss_pred CCC-CCCEEEEEECCCHH
Confidence 655 56789999976543
No 22
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.86 E-value=9.4e-22 Score=152.30 Aligned_cols=138 Identities=21% Similarity=0.185 Sum_probs=97.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
++++||||+|+|+.+..|+++|..+|+..+++|+++||.+........ ..... .. .+.+...+..+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~---~~~~~-------~~----~~~~~~~~~~~ 66 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTG---LIDVN-------MS----SMQDRISTETQ 66 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCC---CEEHH-------HH----HHTTCCCCHHH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhcc---ccccc-------hH----HHHHHHHHHHH
Confidence 469999999999999999999999999999999999998542110000 00000 00 01010111111
Q ss_pred HHHHHHhhhhhhCCccE-EEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 120 TKAADLARPLKEAGFPY-KIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v-~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
+.++++++ ..|+.+ +..+..|+ +.++|++++++.++||||||++ ++.+.++ ||++++|+++++|||++|
T Consensus 67 ~~l~~~~~---~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~-~~~~~~l-----gs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 67 KALLDLAE---SVDYPISEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHH-QDFWSKL-----MSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HHHHHHHH---HSSSCCCCEEEEEEC-HHHHHHHHHHHTTCCEEEEEEC-CCCHHHH-----HHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHH---HcCCCceEEEEecCC-HHHHHHHHHHhcCCCEEEEeCC-Cchhhhh-----cchHHHHHhcCCCCEEEe
Confidence 22222222 236665 45666665 9999999999999999999999 8887764 899999999999999999
Q ss_pred eCC
Q 024982 199 RYP 201 (259)
Q Consensus 199 ~~~ 201 (259)
|+.
T Consensus 137 ~~~ 139 (141)
T 1jmv_A 137 PLR 139 (141)
T ss_dssp ECC
T ss_pred eCC
Confidence 965
No 23
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.85 E-value=1.5e-21 Score=167.11 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=112.4
Q ss_pred CCCCCCCCCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcc
Q 024982 4 QQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVL 83 (259)
Q Consensus 4 ~~~~~~~~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~ 83 (259)
++++.++++++|||++++.... .+++||||+|+++.+..++++|..+|+..+++++++|+.+..
T Consensus 131 s~~~~v~~~a~~PVlvv~~~~~--------------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-- 194 (268)
T 3ab8_A 131 STADRVLRASPVPVLLAPGEPV--------------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-- 194 (268)
T ss_dssp HHHHHHHHHCSSCEEEECSSCC--------------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH--
T ss_pred hhHHHHHHhCCCCEEEECCCCC--------------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH--
Confidence 3567788999999999984321 358999999999999999999999999899999999997642
Q ss_pred cCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEE
Q 024982 84 FGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVI 163 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIV 163 (259)
+...+. ++++.+.+...|++++.++..|+ +.++|++++++. ||||
T Consensus 195 --------------------~~~~~~------------l~~~~~~l~~~~~~~~~~~~~g~-~~~~i~~~a~~~--dliV 239 (268)
T 3ab8_A 195 --------------------ARAEAW------------ALEAEAYLRDHGVEASALVLGGD-AADHLLRLQGPG--DLLA 239 (268)
T ss_dssp --------------------HHHHHH------------HHHHHHHHHHTTCCEEEEEECSC-HHHHHHHHCCTT--EEEE
T ss_pred --------------------HHHHHH------------HHHHHHHHHHcCCceEEEEeCCC-hHHHHHHHHHhC--CEEE
Confidence 111111 22233444556888888887765 999999999987 9999
Q ss_pred EecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 164 MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 164 lG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
||+ ++.++ ++||++++++++++|||+++|
T Consensus 240 ~G~----~~~~~---~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 240 LGA----PVRRL---VFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp EEC----CCSCC---SSCCHHHHHHHHCSSCEEEEC
T ss_pred ECC----ccccc---EeccHHHHHHhcCCCCEEEeC
Confidence 999 67888 999999999999999999986
No 24
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.82 E-value=4.8e-20 Score=142.18 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=93.9
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cC-CcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PT-SVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (259)
+++|||||+|+|+.+..|+++|..+|+..+++|+++||. +. +..........+. .....+.+.+..
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--- 70 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPF---------PPEIKEESKKRI--- 70 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCC---------CTHHHHHHHHHH---
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCC---------ChHHHHHHHHHH---
Confidence 579999999999999999999999999999999999998 53 1000000000000 001111222222
Q ss_pred HHHHHHHHhhh--hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccE
Q 024982 118 TATKAADLARP--LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (259)
Q Consensus 118 ~~~~~~~~~~~--~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PV 195 (259)
++.++++ +. +...| +++.++..|+ +.++|++++++.++||||||++++ |++++|+++++|||
T Consensus 71 -~~~l~~~-~~~~~~~~~-~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~g~------------sv~~~vl~~a~~PV 134 (138)
T 1q77_A 71 -ERRLREV-WEKLTGSTE-IPGVEYRIGP-LSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLAS 134 (138)
T ss_dssp -HHHHHHH-HHHHHSCCC-CCCEEEECSC-HHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEE
T ss_pred -HHHHHHH-HHHhhccCC-cceEEEEcCC-HHHHHHHHHHhcCCCEEEEeCCCC------------chHHHHHHhCCCce
Confidence 2223333 33 34446 7777777775 999999999999999999999865 78999999999999
Q ss_pred EEEe
Q 024982 196 VVVR 199 (259)
Q Consensus 196 lvV~ 199 (259)
++||
T Consensus 135 lvv~ 138 (138)
T 1q77_A 135 LIVK 138 (138)
T ss_dssp EECC
T ss_pred EeeC
Confidence 9986
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=95.65 E-value=0.4 Score=35.97 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=82.3
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCC-CEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPG-DAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
|++|||-+.-.-.+.....-..++..... ....+| ++.+.. ..+.. . .++.++..++.
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VL--VPa~~~--~a~~~-------e----~~~a~~~A~~~------ 59 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLL--VPAVPP--PGWVY-------E----ENEVRRRAEEE------ 59 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEE--EEEECC--CCSCC-------------CHHHHHHHHH------
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEE--ecCCCC--ccccc-------C----hHHHHHHHHHH------
Confidence 37889988877666666655455555443 665443 222211 00100 0 11122222221
Q ss_pred HHHHHHhhhhhhCCccEE-EEEEecCchHHHHHHHHHhcC--CcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 120 TKAADLARPLKEAGFPYK-IHIVKDHDMRERLCLEIERLS--LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~-~~v~~g~~~~~~Il~~a~~~~--~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
+..-.+.+...|+.++ -++..++ |..+|.+.+.+.+ +|-||+-+..+. .+++ |.-..+.+.=+ ...||+
T Consensus 60 --l~~sl~aL~~~G~~a~~G~v~d~~-Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~---fh~DwasrAr~-~gvPVl 131 (138)
T 2iel_A 60 --AAAAKRALEAQGIPVEEAKAGDIS-PLLAIEEELLAHPGAYQGIVLSTLPPG-LSRW---LRLDVHTQAER-FGLPVI 131 (138)
T ss_dssp --HHHHHHHHHTTTCCCSEEEEEESS-HHHHHHHHHHHSTTSCSEEEEEECCTT-TCHH---HHTTHHHHGGG-GSSCEE
T ss_pred --HHHHHHHHHHcCCcccccccCCCC-hHHHHHHHHHhcCCCCceEEEEcCCch-HHHH---HhccHHHHHHh-cCCCEE
Confidence 2234455666799988 8888876 9999999999999 999999998664 5677 77778888777 899998
Q ss_pred EEe
Q 024982 197 VVR 199 (259)
Q Consensus 197 vV~ 199 (259)
=+=
T Consensus 132 hl~ 134 (138)
T 2iel_A 132 HVI 134 (138)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.04 E-value=0.67 Score=42.13 Aligned_cols=40 Identities=18% Similarity=-0.032 Sum_probs=35.5
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.++|+|++.|..+|..++..+..+....+.++.++|+...
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhg 57 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHM 57 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECC
Confidence 4789999999999999999998888777889999999754
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=92.90 E-value=1.1 Score=38.40 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=34.4
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCE-EEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDA-VILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~-l~llhV~~~ 80 (259)
.++|+|++.|..+|..++..+..+....|.+ +.++|+...
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 4789999999999999999888877667778 999999754
No 28
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=92.35 E-value=1.7 Score=36.93 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=79.6
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
-+|||+++-.......++++..+.. ..+-++++++.+... .....+++
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~--------------------~~~l~~ql----------- 68 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTD--------------------KENLLSQL----------- 68 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---C--------------------TTCHHHHH-----------
T ss_pred CcEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCC--------------------ccHHHHHH-----------
Confidence 5799999877788899999999987 577899999875532 11001112
Q ss_pred HHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcC-----CcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLS-----LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~-----~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl 196 (259)
+.+.+.+++.++..-..++...++.+++...++.++ +..|++|-..... ++- -+-.+..++ ++...-|+
T Consensus 69 -~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-~~~---~y~~~i~~~-~~~~~nVl 142 (294)
T 3g40_A 69 -PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-RDE---EIREIIRKA-SMYRMGVL 142 (294)
T ss_dssp -HHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-GHH---HHHHHHHHH-HHTTCEEE
T ss_pred -HHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-hhH---HHHHHHHHH-HHhCceEE
Confidence 224567777899999999999999999999888865 7899999874432 211 123333333 34578899
Q ss_pred EEeCCC
Q 024982 197 VVRYPD 202 (259)
Q Consensus 197 vV~~~~ 202 (259)
+.+.+.
T Consensus 143 il~~~~ 148 (294)
T 3g40_A 143 LFSKHP 148 (294)
T ss_dssp EEECCT
T ss_pred EEecCC
Confidence 997543
No 29
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=91.47 E-value=0.66 Score=37.77 Aligned_cols=87 Identities=9% Similarity=-0.098 Sum_probs=57.7
Q ss_pred CCeEEEeecC-----ChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDL-----SDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD 115 (259)
Q Consensus 41 ~~rILVavD~-----s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (259)
|+.|||-++. .+.+..++..|.+|+...|.+++++.+-+.. .+ .+++
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~---------------------~~----~~~~--- 54 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL---------------------KE----IEKQ--- 54 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC---------------------TT----THHH---
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH---------------------HH----HHHH---
Confidence 4679998874 4678999999999998888999988775431 00 1111
Q ss_pred HHHHHHHHHHhhhhhhCCccEEEEEEe----cC---chHHHHHHHHHhcCCcEEEEecCC
Q 024982 116 TFTATKAADLARPLKEAGFPYKIHIVK----DH---DMRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v~v~~~v~~----g~---~~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
+ ...|.+--+.+.. +. .....|.+.++++++|+|++|...
T Consensus 55 ---------~----~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 55 ---------I----LPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp ---------H----GGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred ---------H----HhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 1125552332221 11 146678888899999999999864
No 30
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=90.21 E-value=1.2 Score=40.58 Aligned_cols=116 Identities=12% Similarity=0.126 Sum_probs=76.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|.+.|...+.++..+++.++..... .. ....++.+.++.+.+.
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~-----------------~~--------~r~~Fl~~sL~~L~~~ 100 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEA-----------------GI--------RQYEFMLKGLQELEVS 100 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGS-----------------CH--------HHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhcc-----------------CH--------HHHHHHHHHHHHHHHH
Confidence 5555677889999887766677899999988753210 11 1112333345566677
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
+++.|+++.+ ..|+ +.+.|.+.+++.+++.|+.-........ ....++.+.+.|++..+..
T Consensus 101 L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~V~~~~~~~~~~~--------~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 101 LSRKKIPSFF--LRGD-PGEKISRFVKDYNAGTLVTDFSPLRIKN--------QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp HHHTTCCEEE--EESC-HHHHHHHHHHHTTCSEEEEECCCSHHHH--------HHHHHHHHHCCSCEEEECC
T ss_pred HHHcCCcEEE--EeCC-HHHHHHHHHHHcCCCEEEEecccchhHH--------HHHHHHHHHcCCEEEEEeC
Confidence 7766776544 5565 9999999999999999998654322111 2355666666888888764
No 31
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=90.14 E-value=1.7 Score=36.48 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.2
Q ss_pred EeecCChhHHHHHHHHHHHhCCCCC--EEEEEEEec
Q 024982 46 VAVDLSDESAFAVRWAVHHYLRPGD--AVILVHVSP 79 (259)
Q Consensus 46 VavD~s~~s~~al~~A~~lA~~~~a--~l~llhV~~ 79 (259)
+..-.++.+..|+..|.+|+.+.|+ +++++.+-+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~ 66 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP 66 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc
Confidence 4555678999999999999876666 899987753
No 32
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=88.68 E-value=4.3 Score=33.66 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=25.9
Q ss_pred eecCChhHHHHHHHHHHHhCCCCC--EEEEEEEec
Q 024982 47 AVDLSDESAFAVRWAVHHYLRPGD--AVILVHVSP 79 (259)
Q Consensus 47 avD~s~~s~~al~~A~~lA~~~~a--~l~llhV~~ 79 (259)
..-.++.+..|+..|.++..+ |+ +++++.+-+
T Consensus 32 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 65 (252)
T 1efp_B 32 KMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGV 65 (252)
T ss_dssp CEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 344578899999999999876 66 899988764
No 33
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=88.38 E-value=4.1 Score=33.85 Aligned_cols=33 Identities=24% Similarity=0.158 Sum_probs=26.2
Q ss_pred eecCChhHHHHHHHHHHHhCCCCC--EEEEEEEecC
Q 024982 47 AVDLSDESAFAVRWAVHHYLRPGD--AVILVHVSPT 80 (259)
Q Consensus 47 avD~s~~s~~al~~A~~lA~~~~a--~l~llhV~~~ 80 (259)
..-.++.+..|+..|.++..+ |+ +++++.+-+.
T Consensus 35 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~ 69 (255)
T 1efv_B 35 KHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPA 69 (255)
T ss_dssp CEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEEST
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh
Confidence 344578899999999999876 66 8999887643
No 34
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=86.96 E-value=4.7 Score=31.62 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=48.3
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
++.+++.|++++..+..-....+.+.+++++ .+++.||.|.-+...+. --+.-.++.||+=||-..
T Consensus 42 ~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp-----------GvvAa~T~~PVIGVPv~s 110 (181)
T 4b4k_A 42 CDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP-----------GMVAAKTNLPVIGVPVQS 110 (181)
T ss_dssp HHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH-----------HHHHTTCCSCEEEEECCC
T ss_pred HHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch-----------hhHHhcCCCCEEEEecCC
Confidence 3444556999999998887777777777754 67889999886554443 345668899999999753
No 35
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=86.52 E-value=2.7 Score=32.74 Aligned_cols=64 Identities=27% Similarity=0.387 Sum_probs=46.2
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..++..|++++..+..-+...+.+.+++++ .+++.||.|.-+...+ ..-+.-.+.+||+=||-.
T Consensus 33 ~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahL-----------pgvvA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 33 AILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHL-----------PGMLAAKTTVPVLGVPVA 99 (173)
T ss_dssp HHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCH-----------HHHHHHHCCSCEEEEEEC
T ss_pred HHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccc-----------hhhheecCCCCEEEEEcC
Confidence 344556899999988877777777676654 6789888888654443 334566789999999854
No 36
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=86.41 E-value=1.7 Score=34.12 Aligned_cols=113 Identities=12% Similarity=-0.035 Sum_probs=66.7
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
.+||++++.|+..+..+++....|.+ .|.+++++- ........ ..+ .+
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~--T~~A~~fi----------------~~~---~l---------- 52 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKS-KFDEVNVIA--STNGRKFI----------------NGE---IL---------- 52 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEE--CTGGGGGS----------------CHH---HH----------
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE--CcCHHHHh----------------hHH---HH----------
Confidence 48999999999999998888877655 588877753 22211000 111 11
Q ss_pred HHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 121 KAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.+. + ++... . ++.....++.+++ +|++|+---..+.+.++-.|+-.+....++....+|++++|
T Consensus 53 --~~l~------~-~v~~~--~-~~~~~~hi~l~~~--aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 53 --KQFC------D-NYYDE--F-EDPFLNHVDIANK--HDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp --HHHC------S-CEECT--T-TCTTCCHHHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred --HHhc------C-CEEec--C-CCCccccccccch--hCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 1111 2 11111 1 1121223444544 89999987666666666444445555566777899999999
No 37
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=85.71 E-value=3.6 Score=31.60 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=48.8
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
+..++..|++++..+..-+...+.+.+++++...+.||.+.-+... ...-+.-.+++||+=||-
T Consensus 19 ~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~-----------Lpgvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 19 VNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAH-----------LPGVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCC-----------HHHHHHTTCSSCEEEEEE
T ss_pred HHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhh-----------hHHHHHhccCCCEEEecC
Confidence 3344556999999998877788889999987666888888854443 344566788999999996
No 38
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=84.30 E-value=3.4 Score=35.02 Aligned_cols=136 Identities=9% Similarity=-0.013 Sum_probs=80.7
Q ss_pred CCCCCCeeEecCCCCCCCCCCCCCCCCCCCCCeEEEeecC----------ChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 11 DHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDL----------SDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 11 ~~~~~pv~~v~~~~~~~~~~~~~~~~~~~~~~rILVavD~----------s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.+....|++.+..+.. .-..+++|=|=+.+ ..+..-++-.|-.+.+..+++|.+..|++.
T Consensus 135 ~~~~~nVlil~~~~~~----------~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d 204 (294)
T 3g40_A 135 SMYRMGVLLFSKHPQA----------GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT 204 (294)
T ss_dssp HHTTCEEEEEECCTTT----------TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHhCceEEEEecCCcc----------CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC
Confidence 3456778888732111 11245777776322 234455555555555556999999999775
Q ss_pred CcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCc
Q 024982 81 SVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLS 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~d 160 (259)
+ +..+..++.+.+ +.+.+ .+..+..++. + +...|+..+ -++|
T Consensus 205 e-----------------------~a~~~a~~~l~~--------Lv~~~---Ri~a~~~vv~-~-~F~~il~~s--~~AD 246 (294)
T 3g40_A 205 A-----------------------IQAQAAENFLQS--------LAELA---RIPNVKMQVL-R-ENPIKSSKL--PFAS 246 (294)
T ss_dssp H-----------------------HHHHHHHHHHHH--------HHHHH---TCCSCEEEEE-S-SCTTTSSSC--CCCS
T ss_pred H-----------------------HHHHHHHHHHHH--------HHHHh---cCCceEEEec-C-chHHHHhhC--cCCC
Confidence 3 222233332222 22222 2333333443 4 567777665 6799
Q ss_pred EEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCC
Q 024982 161 AVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (259)
Q Consensus 161 LIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~ 203 (259)
|+++|-.....+ -+.+++...+...++.|++...
T Consensus 247 L~flGl~~~~df---------~~~~~~~~~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 247 LHIFSLDPNPDL---------DLARHLMEKAGSSCIFALDSGE 280 (294)
T ss_dssp EEEEECCSSCCH---------HHHHHHHHHHTSEEEEEECCSC
T ss_pred EEEEcCCCCCcH---------HHHHHHHHhcCCeEEEEecCch
Confidence 999999766554 3468899999988899987643
No 39
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=83.17 E-value=5.3 Score=31.01 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=47.3
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
..++..|++++..+..-....+.+.+++++ .+++.||.+.-+... ...-+.-.++.||+=||-..
T Consensus 32 ~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~~ 99 (170)
T 1xmp_A 32 DILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAH-----------LPGMVAAKTNLPVIGVPVQS 99 (170)
T ss_dssp HHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCC-----------HHHHHHTTCCSCEEEEEECC
T ss_pred HHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhh-----------hHHHHHhccCCCEEEeeCCC
Confidence 344455999999988776677888888764 458888888754443 34456678899999999653
No 40
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=83.08 E-value=4.7 Score=31.32 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=46.3
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHH---hcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~---~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..++..|++++..+..-+...+.+.++++ +.+++.||.+.-+... ...-+.-.+++||+=||-.
T Consensus 27 ~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~ 93 (169)
T 3trh_A 27 TELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAH-----------LAGTIAAHTLKPVIGVPMA 93 (169)
T ss_dssp HHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCC-----------HHHHHHHTCSSCEEEEECC
T ss_pred HHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhh-----------hHHHHHhcCCCCEEEeecC
Confidence 34455699999988887666777777754 4778988888754443 3445667899999999965
No 41
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=82.92 E-value=5.2 Score=31.20 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=47.2
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..++..|++++..+..-+...+.+.+++++ .+++.||.+.-+... ...-+.-.+++||+=||-.
T Consensus 33 ~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~ 99 (174)
T 3kuu_A 33 DVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAH-----------LPGMLAAKTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCC-----------HHHHHHHTCSSCEEEEEEC
T ss_pred HHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhh-----------hHHHHHhccCCCEEEeeCC
Confidence 344455999999988877778888888764 568888888754443 3445667889999999865
No 42
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=81.44 E-value=7.1 Score=30.20 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=47.5
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
..++..|+.++..+..-+...+.+.+++++ .+++.||.+.-+... ...-+.-.+++||+=||-..
T Consensus 26 ~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~~ 93 (166)
T 3oow_A 26 DILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAH-----------LPGMVAAKTTLPVLGVPVKS 93 (166)
T ss_dssp HHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCC-----------HHHHHHHTCSSCEEEEECCC
T ss_pred HHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchh-----------hHHHHHhccCCCEEEeecCc
Confidence 344455899999988877777778888764 467888888854443 34456678999999999643
No 43
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=81.00 E-value=6 Score=31.07 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=47.3
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
..++..|++++..+..-+...+.+.+++++ .+++.||.+.-+... ...-+.-.+++||+=||-..
T Consensus 42 ~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~~ 109 (182)
T 1u11_A 42 ALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAH-----------LPGMCAAWTRLPVLGVPVES 109 (182)
T ss_dssp HHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCC-----------HHHHHHHHCSSCEEEEEECC
T ss_pred HHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhh-----------hHHHHHhccCCCEEEeeCCC
Confidence 334455999999998877778888888765 458888888754443 34446677899999999653
No 44
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=80.48 E-value=6.8 Score=30.23 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=46.8
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
..++..|++++..+..-+...+.+.+++++ .+++.||.+.-+... ...-+.-.+++||+=||-..
T Consensus 24 ~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~~ 91 (163)
T 3ors_A 24 NMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAH-----------LPGMVASLTTLPVIGVPIET 91 (163)
T ss_dssp HHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCC-----------HHHHHHHHCSSCEEEEEECC
T ss_pred HHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhh-----------hHHHHHhccCCCEEEeeCCC
Confidence 344556999999988877777888777754 568888888754443 34446667999999998653
No 45
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=80.42 E-value=9.2 Score=34.65 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024982 50 LSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPL 129 (259)
Q Consensus 50 ~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (259)
..-....||..|++. ..+ +|..+++.++..... .........++.+.++.+.+.+
T Consensus 11 LRl~DN~aL~~A~~~--~~~-~v~~vfi~dp~~~~~----------------------~~~~~~r~~fl~~sL~~L~~~L 65 (471)
T 1dnp_A 11 LRLHDNLALAAACRN--SSA-RVLALYIATPRQWAT----------------------HNMSPRQAELINAQLNGLQIAL 65 (471)
T ss_dssp CCSTTCHHHHHHSSS--TTS-EEEEEEEECHHHHHH----------------------TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHhC--CCC-CEEEEEEECchhhcc----------------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 333455677777552 134 899999987632100 0011111233344466677777
Q ss_pred hhCCccEEEEEE--ecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeC
Q 024982 130 KEAGFPYKIHIV--KDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRY 200 (259)
Q Consensus 130 ~~~~v~v~~~v~--~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~ 200 (259)
.+.|+.+.+... .|+ +.+.|.+.+++.+++.|+.-..-... .. ....+|.+.+. |++..+..
T Consensus 66 ~~~G~~L~v~~~~~~g~-~~~~l~~l~~~~~~~~v~~~~~~~~~-~~-------~rd~~v~~~l~~i~~~~~~~ 130 (471)
T 1dnp_A 66 AEKGIPLLFREVDDFVA-SVEIVKQVCAENSVTHLFYNYQYEVN-ER-------ARDVEVERALRNVVCEGFDD 130 (471)
T ss_dssp HHTTCCEEEEECSSHHH-HHHHHHHHHHHHTCCEEEEECCCSHH-HH-------HHHHHHHHHCTTSEEEEECC
T ss_pred HHCCCeEEEEEccCCCC-HHHHHHHHHHHcCCCEEEEecccCch-HH-------HHHHHHHHHhcCcEEEEecC
Confidence 777877655433 454 89999999999999999886543322 21 23445544444 78777764
No 46
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=80.19 E-value=19 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.4
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.++++|++.|..+|..++..+.+. +.++..+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 478999999999999888877654 468899998754
No 47
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=79.59 E-value=11 Score=32.35 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=33.3
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+.+++|++.+..+|...+..+.......+-++.++|+...
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg 85 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 85 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC
Confidence 4689999999999999999998877655567889998655
No 48
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=79.59 E-value=6.5 Score=30.66 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=45.5
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHH---HhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEI---ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a---~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..++..|++++..+..-+...+.+.+++ ++.+++.||.+.-+... ...-+.-.+++||+=||-.
T Consensus 28 ~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~ 94 (174)
T 3lp6_A 28 AALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAH-----------LPGMVAAATPLPVIGVPVP 94 (174)
T ss_dssp HHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCC-----------HHHHHHHHCSSCEEEEEEC
T ss_pred HHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhh-----------hHHHHHhccCCCEEEeeCC
Confidence 3444558999988888766666666664 45778988888754443 3444666799999999865
No 49
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=78.50 E-value=7.5 Score=34.80 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=35.1
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCC-CCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLR-PGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~-~~a~l~llhV~~~ 80 (259)
.++|+|++.|..+|..++.....+... .+.++.++||...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence 478999999999999999999888776 7889999999754
No 50
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=78.44 E-value=7.4 Score=30.57 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=46.4
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
..++..|++++..+..-....+.+.+++++ .+++.||.+.-+... ...-+.-.+++||+=||-..
T Consensus 34 ~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~-----------LpgvvA~~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 34 EILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAH-----------LPGMVASITHLPVIGVPVKT 101 (183)
T ss_dssp HHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCC-----------HHHHHHHHCSSCEEEEEECC
T ss_pred HHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccc-----------cHHHHHhccCCCEEEeeCCC
Confidence 344455999999988776677777777764 568888888754443 34446667999999999654
No 51
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=77.75 E-value=7.6 Score=35.59 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=59.7
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|++.|.+.+.+|..+++.++..... .. ... ...++.+.++++.+.
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~-~~--------------~~~--------r~~FL~~sL~dL~~~ 103 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLL-SA--------------RRR--------QLGFLLRGLRRLAAD 103 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG-GC--------------CHH--------HHHHHHHHHHHHHHH
T ss_pred CcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc-CC--------------CHH--------HHHHHHHHHHHHHHH
Confidence 5666778999999998877788899999988752100 00 111 112233335556666
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEE
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIM 164 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVl 164 (259)
+.+.|+. ..+..|+ +.+. .+.+++.+++.|+.
T Consensus 104 L~~lG~~--L~v~~G~-p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 104 AAARHLP--FFLFTGG-PAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp HHHTTCC--EEEESSC-TTHH-HHHHHHTTCSEEEE
T ss_pred HHHcCCc--eEEEecC-hHHH-HHHHHhcCCCEEEe
Confidence 6655655 4556676 7888 99999999999997
No 52
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=77.66 E-value=7 Score=30.03 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=46.1
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHh---c-CCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIER---L-SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~---~-~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..++..|++++..+..-+...+.+.+++++ . +++.||.+.-+...+ ..-+.-.+++||+=||-.
T Consensus 23 ~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~L-----------pgvvA~~t~~PVIgVP~~ 90 (159)
T 3rg8_A 23 SELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNAL-----------SGFVDGFVKGATIACPPP 90 (159)
T ss_dssp HHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCH-----------HHHHHHHSSSCEEECCCC
T ss_pred HHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhh-----------HHHHHhccCCCEEEeeCC
Confidence 344455999999888877777778787754 2 588998888644433 444666789999999854
No 53
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=77.21 E-value=22 Score=28.04 Aligned_cols=35 Identities=3% Similarity=0.025 Sum_probs=28.8
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.+|+|++.|..+|..++..+.++. .++.++|+...
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCC
Confidence 589999999999999888887763 46788898764
No 54
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=76.89 E-value=11 Score=33.53 Aligned_cols=111 Identities=15% Similarity=0.051 Sum_probs=67.9
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|.+. + ++..+++.++.... . ......++.+.++.+.+.
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~------------------------~-~~~r~~fl~~sL~~l~~~ 60 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNNLK------------------------T-TPRRRAWFLENVRALREA 60 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHHHS------------------------S-CHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCcccc------------------------C-CHHHHHHHHHHHHHHHHH
Confidence 4444566777777642 3 78888887653210 0 111122333445666677
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
+++.|+++.+ ..|+ +.+.|.+.+++.+++.|+.-..-... .. ....+|-+.+.|++..+..
T Consensus 61 L~~~g~~l~~--~~g~-~~~~l~~l~~~~~~~~v~~~~~~~~~-~~-------~rd~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 61 YRARGGALWV--LEGL-PWEKVPEAARRLKAKAVYALTSHTPY-GR-------YRDGRVREALPVPLHLLPA 121 (420)
T ss_dssp HHHTTCCEEE--EESC-HHHHHHHHHHHTTCSEEEEECCCSHH-HH-------HHHHHHHHHCSSCEEEECC
T ss_pred HHHCCCeEEE--EeCC-HHHHHHHHHHHcCCCEEEEecccChh-HH-------HHHHHHHHHcCCeEEEeCC
Confidence 7766776544 5565 99999999999999999986543222 11 2345555555888877764
No 55
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=73.30 E-value=44 Score=30.17 Aligned_cols=131 Identities=11% Similarity=-0.010 Sum_probs=71.9
Q ss_pred CeEEEee--cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAV--DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 42 ~rILVav--D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+.+|+=. |..-....||..|++ .+.++..+++.++......... .. . ..... ..++.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~-~~----~----~~~~r--------~~Fl~ 64 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQG-FA----K----TGPWR--------SNFLQ 64 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTS-CB----S----SCHHH--------HHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccc-cC----C----CCHHH--------HHHHH
Confidence 3444444 555667788888765 3457888888876432210000 00 0 01111 11223
Q ss_pred HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.++.+.+.+++.|+.+.+ ..|+ +.+.|.+.+++.+++-|+.-..-.....+. -....+.++...|++..+.
T Consensus 65 ~sL~~L~~~L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~V~~~~~~~~~~~~r-----d~~v~~~l~~~gi~~~~~~ 136 (489)
T 1np7_A 65 QSVQNLAESLQKVGNKLLV--TTGL-PEQVIPQIAKQINAKTIYYHREVTQEELDV-----ERNLVKQLTILGIEAKGYW 136 (489)
T ss_dssp HHHHHHHHHHHHTTCCEEE--EESC-HHHHHHHHHHHTTEEEEEEECCCSHHHHHH-----HHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHCCCcEEE--EECC-HHHHHHHHHHHcCCCEEEEecccCHHHHHH-----HHHHHHHHHhcCCeEEEec
Confidence 3355566666666766544 5665 899999999999999988875432221111 1122233344567777765
Q ss_pred CC
Q 024982 200 YP 201 (259)
Q Consensus 200 ~~ 201 (259)
..
T Consensus 137 ~~ 138 (489)
T 1np7_A 137 GS 138 (489)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 56
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=71.92 E-value=21 Score=32.96 Aligned_cols=100 Identities=10% Similarity=-0.029 Sum_probs=64.0
Q ss_pred eEEEee--cCChhHHHHHHHHHHHhCC--CCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHH
Q 024982 43 KIGVAV--DLSDESAFAVRWAVHHYLR--PGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (259)
Q Consensus 43 rILVav--D~s~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (259)
.+|+=. |..-....||..|++.+.. .+.++..+++.++........ ... ...++
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~--------------~~~--------r~~Fl 87 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQV--------------GAN--------RWRFL 87 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTS--------------CHH--------HHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCC--------------CHH--------HHHHH
Confidence 435444 5666778889999887754 466799999988754211000 111 11222
Q ss_pred HHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
.+.++.+.+.+++.|+.+.+ ..|+ +.+.|.+.+++.+++.|+.-..
T Consensus 88 ~~sL~~L~~~L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~v~~~~~ 133 (543)
T 2wq7_A 88 QQTLEDLDNQLRKLNSRLFV--VRGK-PAEVFPRIFKSWRVEMLTFETD 133 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCEE--EESC-HHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCeEEE--EeCC-HHHHHHHHHHHcCCCEEEEecC
Confidence 33355566666666766544 4565 8999999999999999888644
No 57
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=71.59 E-value=40 Score=29.77 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
..+++|++.|...|..++..+.+ .|.++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 47999999999999888877765 378999999864
No 58
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=71.26 E-value=7.7 Score=27.13 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=35.8
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCC----CcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 145 DMRERLCLEIERLSLSAVIMGSRGF----GAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~~~----~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
...+.|.+.+++++++.||+|-... .....- ..-..+++|-++ ++||.++-+.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~---~~~~f~~~L~~~-~lpV~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAG---KVLPLVEALRAR-GVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSS---TTHHHHHHHHHT-TCEEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHH---HHHHHHHHHhcC-CCCEEEECCC
Confidence 3577899999999999999996422 111111 223457777777 8999888653
No 59
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=70.80 E-value=5.8 Score=31.94 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=31.2
Q ss_pred CCCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 38 ~~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
|...+||++++.|+..+..+++....|.+ .|.+++++-
T Consensus 1 m~~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~ 38 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLI 38 (209)
T ss_dssp CCSCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 34559999999999999999999888876 488887763
No 60
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=70.06 E-value=37 Score=30.89 Aligned_cols=118 Identities=16% Similarity=0.030 Sum_probs=68.7
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|++. + ++..+++.++......... .. . ..++.+.++.+.+.
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~-------------~~--~-------~~fl~~sL~~L~~~ 73 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPG-------------RV--S-------RWWLKNSLAQLDSS 73 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCC-------------HH--H-------HHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcc-------------hH--H-------HHHHHHHHHHHHHH
Confidence 5666677888888774 2 5677888776432110000 00 0 11333345566677
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
+++.|+.+ .+..++++.+.|.+.+++.+++.|+.-... .....- .-....+.++...|++..+..
T Consensus 74 L~~~G~~L--~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~~~----rd~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 74 LRSLGTCL--ITKRSTDSVASLLDVVKSTGASQIFFNHLY-DPLSLV----RDHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHTTCCE--EEEECSCHHHHHHHHHHHHTCCEEEEECCC-SHHHHH----HHHHHHHHHHTTTCEEEEECC
T ss_pred HHHCCCeE--EEEeCCCHHHHHHHHHHHcCCCEEEEeccc-CHHHHH----HHHHHHHHHHHcCcEEEEECC
Confidence 77667764 445555699999999999999999886532 211111 111223445556788877764
No 61
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=69.82 E-value=13 Score=33.77 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=66.9
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|.+.+ .++..+++.++........ ... ...++.+.++.+.+.
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~~~~--------------~~~--------r~~fl~~sL~~L~~~ 65 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQSADM--------------APA--------RVAYLQGCLQELQQR 65 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTCTTC--------------CHH--------HHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcCCCC--------------CHH--------HHHHHHHHHHHHHHH
Confidence 44445667787777632 3688888887642210000 111 112223335556666
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
+++.|+.+.+ ..|+ +.+.|.+.+++.+++.|+.-..-... ..- . -....+.++...|++..+..
T Consensus 66 L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~v~~~~~~~p~-~~~---r-d~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 66 YQQAGSRLLL--LQGD-PQHLIPQLAQQLQAEAVYWNQDIEPY-GRD---R-DGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HHHHTSCEEE--EESC-HHHHHHHHHHHTTCSEEEEECCCSHH-HHH---H-HHHHHHHHHHTTCEEEEECC
T ss_pred HHHCCCeEEE--EeCC-HHHHHHHHHHHcCCCEEEEeccCChh-HHH---H-HHHHHHHHHHcCcEEEEecC
Confidence 6665766544 5565 99999999999999999886543222 111 1 12223334455788887764
No 62
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=69.00 E-value=13 Score=34.39 Aligned_cols=92 Identities=14% Similarity=0.013 Sum_probs=58.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|++.+. .|.+|..|+|.++........ ... ...++.+.+.++.+.
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~--------------~~~--------r~~Fl~~sL~~L~~~ 69 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNV--------------GYN--------RMRFLLDSLQDIDDQ 69 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTC--------------CHH--------HHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCC--------------CHH--------HHHHHHHHHHHHHHH
Confidence 455556678888877654 555899999998754321100 111 112233335556666
Q ss_pred hhhC---CccEEEEEEecCchHHHHHHHHHhcCCcEEEEec
Q 024982 129 LKEA---GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (259)
Q Consensus 129 ~~~~---~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~ 166 (259)
+.+. |+. ..+..|+ +.+.|.+.+++.+++.|+.-.
T Consensus 70 L~~~~~~G~~--L~v~~G~-~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 70 LQAATDGRGR--LLVFEGE-PAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp GGGSCSSSSC--CEEEESC-HHHHHHHHHHHHCEEEECEEC
T ss_pred HHHhhcCCCe--EEEEeCC-HHHHHHHHHHHcCCCEEEEcc
Confidence 6665 555 4556676 899999999999999998644
No 63
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=68.32 E-value=44 Score=26.75 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCcEEEEecCC
Q 024982 148 ERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~~ 168 (259)
+++++..++.++|+||+..-+
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEeCCc
Confidence 778899999999999997643
No 64
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=65.62 E-value=57 Score=28.91 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
..++|+|++.|...|..++.++.+. |.+++.+|+...
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 3579999999999999998888662 778999998754
No 65
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=64.29 E-value=82 Score=28.34 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=31.8
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
..+||+|++.|...|..++.++.+ .|.+++.+|+...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e----~G~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQ----KGAVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHH----cCCEEEEEEEEcC
Confidence 458999999999999999998866 2789999999765
No 66
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=61.62 E-value=63 Score=26.41 Aligned_cols=40 Identities=3% Similarity=-0.136 Sum_probs=32.3
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 81 (259)
+.+++|++.+..+|...+..+.++... +.++.++|+....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 457999999999999999988887654 5678889986553
No 67
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=61.17 E-value=38 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=29.6
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+++++++.|..+|..++..+.+. |.+++.+|+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCC
Confidence 79999999999998888777664 689999998654
No 68
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=61.14 E-value=74 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.2
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~ 78 (259)
..|++|++.| -.|.-|+-.+. +.|.+++.+|+.
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~----~~G~~v~~v~~~ 211 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMM----KRGVEVIPVYIG 211 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHH----HBTCEEEEEEES
T ss_pred CCcEEEEEeC-CcHHHHHHHHH----hCCCeEEEEEEE
Confidence 3699999999 88876655443 468999999987
No 69
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=60.01 E-value=8.9 Score=30.03 Aligned_cols=113 Identities=7% Similarity=-0.026 Sum_probs=65.5
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
++||++++.|+.....+++....|.+ .|.+++++-...-..+. ..+ .+
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~A~~fi------------------~~~---~l---------- 49 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVELKQ-HFDEVNILFSPSSKNFI------------------NTD---VL---------- 49 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEECGGGGGTS------------------CGG---GG----------
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchhHHHHH------------------HHH---HH----------
Confidence 48999999999999999999888855 58888776432111100 000 00
Q ss_pred HHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 121 KAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.+. +. ..-.++..+... ++.+ ..+|++|+.--..+.+.++..|+-.+....++....+|++++|
T Consensus 50 ------~~l~--~~---~~d~~~~~~~~h-i~l~--~~aD~~vIaPaTantlAKiA~GiaDnllt~~~la~~~pvvlaP 114 (181)
T 1g63_A 50 ------KLFC--DN---LYDEIKDPLLNH-INIV--ENHEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFP 114 (181)
T ss_dssp ------GGTS--SC---EECTTTCTTCCH-HHHH--HTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTGGGEEEEE
T ss_pred ------HHHh--CC---cccccCCCCCcc-cccc--ccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHcCCCEEEEe
Confidence 1111 11 111111101111 1223 3489999987766677776444445555555566889999999
No 70
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=59.69 E-value=27 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=29.0
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++++|++.|...|..++..+.+. .|.+++.+|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCC
Confidence 68999999999998888777654 2567899998754
No 71
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=58.59 E-value=12 Score=33.54 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=65.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|++ .+.+|..+++.++......... ... ...++.+.++.+.+.
T Consensus 10 DLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~-------------~~~--------r~~Fl~~sL~~L~~~ 64 (440)
T 2e0i_A 10 DLRLEDNTGLNYALS----ECDRVIPVFIADPRQLINNPYK-------------SEF--------AVSFMINSLLELDDE 64 (440)
T ss_dssp CCCSSSCHHHHHHHH----HSSEEEEEEEECHHHHSSCTTC-------------CHH--------HHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHh----cCCCEEEEEEeChhhhccCCcC-------------CHH--------HHHHHHHHHHHHHHH
Confidence 444455677877776 2568999999876422110000 111 112233335556666
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
+++.|+++.+ ..|+ +.+.|.+.++ +++.|+.-..-.....+. -....+.++..+|++..+..
T Consensus 65 L~~~G~~L~v--~~g~-~~~~l~~l~~--~~~~v~~~~~~~~~~~~r-----d~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 65 LRKKGSRLNV--FFGE-AEKVVSRFFN--KVDAIYVNEDYTPFSISR-----DEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp HHTTTCCCEE--EESC-HHHHHHHHCT--TCSEEEEECCCSHHHHHH-----HHHHHHHHHTTTCEEEEECC
T ss_pred HHHcCCeEEE--EECC-HHHHHHHHHc--CCCEEEEecccChHHHHH-----HHHHHHHHHHcCceEEEecC
Confidence 7766766544 5565 8999988888 899988855422211111 12223334445777777764
No 72
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=58.57 E-value=14 Score=29.17 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=28.7
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
+||++++.|+..+..+++....|.+. |.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 79999999999999999988888664 88887763
No 73
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=55.03 E-value=88 Score=25.77 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=80.6
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHH
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (259)
.-..-.=+++.+.-.....++.+.++|++.|..|- -|.-+++. .. .+...+... .+ .+......+
T Consensus 26 ~~VtSANIACGfHAGDp~~M~~tv~lA~~~gV~IG-AHPgypDl-~G--FGRR~m~~s------~~----el~~~v~YQ- 90 (255)
T 1v6t_A 26 KYITSANVACGWHAGDPLVMRKTVRLAKENDVQVG-AHPGYPDL-MG--FGRRYMKLT------PE----EARNYILYQ- 90 (255)
T ss_dssp TTCSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EECCCSCT-TT--TTCSCCCCC------HH----HHHHHHHHH-
T ss_pred HHhhhhhhhccccCCCHHHHHHHHHHHHHcCCeEe-cCCCCCcc-cC--CCCCCCCCC------HH----HHHHHHHHH-
Confidence 34456778999998889999999999998887764 45544431 11 111111100 11 121111111
Q ss_pred HHHHHHHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh
Q 024982 119 ATKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH 189 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~ 189 (259)
...+...++..|.++...--+| ...+++|++.++..+.+|+++|.. ||.-.+..+
T Consensus 91 ---iGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-------------gs~~~~~A~ 154 (255)
T 1v6t_A 91 ---VGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS-------------NSRVADIAE 154 (255)
T ss_dssp ---HHHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET-------------TCHHHHHHH
T ss_pred ---HHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHH
Confidence 2234444555677766655443 457899999999999999999954 456677778
Q ss_pred cCCccEEEE
Q 024982 190 HCVCPVVVV 198 (259)
Q Consensus 190 ~s~~PVlvV 198 (259)
+...|++-=
T Consensus 155 ~~Gl~~~~E 163 (255)
T 1v6t_A 155 EMGLKVAHE 163 (255)
T ss_dssp HHTCCEEEE
T ss_pred HcCCcEEEE
Confidence 888877653
No 74
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=53.30 E-value=84 Score=24.97 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCcEEEEecC
Q 024982 148 ERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~ 167 (259)
+++++..++.++|++|+..-
T Consensus 76 ~~~~~~l~~~~~Dliv~agy 95 (209)
T 4ds3_A 76 DAILAALDVLKPDIICLAGY 95 (209)
T ss_dssp HHHHHHHHHHCCSEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEecc
Confidence 67889999999999999764
No 75
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=52.50 E-value=93 Score=25.26 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=49.5
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
.|+++.++|...|..|+-++. +.|-++..++...+.......+.... .+ .++
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~~~~~~s~~~h~~~----------~e----~a~---------- 56 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMVSENEESYMYHTIN----------AN----LTD---------- 56 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEECC--------CCS----------SS----HHH----------
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEcCCCCCccccCCcc----------HH----HHH----------
Confidence 589999999999987776654 45778887766544321000000000 00 011
Q ss_pred HHHHhhhhhhCCccEEEEEEecC--chHHHHHHHHHhcCCcEEEEecC
Q 024982 122 AADLARPLKEAGFPYKIHIVKDH--DMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g~--~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
..+ ...|++....-..+. +-.+.+.+..++.+++-++.|.-
T Consensus 57 --~~A---~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 57 --LQA---RALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp --HHH---HHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred --HHH---HHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 011 112666655544442 23566777777778999998874
No 76
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=52.18 E-value=73 Score=27.70 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=29.3
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.+||+|++.|...|..++..+.+ .|.++..+|+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 47999999999999888776654 3789999998654
No 77
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=51.90 E-value=80 Score=26.56 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=29.1
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhC------------------CCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYL------------------RPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~------------------~~~a~l~llhV~~~ 80 (259)
.+|+|+..|..+|.-++..+.+... ..+.++.++|+...
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg 110 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQE 110 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCT
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCC
Confidence 5799999999999988887776531 12456888888654
No 78
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=51.70 E-value=21 Score=28.04 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=29.1
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+.++|++|++.|...|..++..+.+ .|.++..+|+...
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 4568999999999999888866543 4678999998754
No 79
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=50.52 E-value=95 Score=25.53 Aligned_cols=126 Identities=12% Similarity=0.031 Sum_probs=77.2
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (259)
.-.=+++.+.-.....++.+.++|++.|..|- -|.-+++. .. .+...+.. . .+.+......+
T Consensus 24 tSANIACGfHAGDp~~M~~Tv~lA~~~gV~IG-AHPgypDl-~G--FGRR~m~~-------s---~~el~~~v~YQ---- 85 (252)
T 1xw8_A 24 SSANIACGFHAGDAQIMQACVREAIKNGVAIG-AHPSFPDR-EN--FGRSAMQL-------P---PETVYAQTLYQ---- 85 (252)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHHTCEEE-EECCCC----------CCCCC-------C---HHHHHHHHHHH----
T ss_pred hhHHHhhcccCCCHHHHHHHHHHHHHcCCeee-cCCCCCcc-cC--CCCCCCCC-------C---HHHHHHHHHHH----
Confidence 44567888888888899999999998887664 45544331 11 11111110 0 11121111111
Q ss_pred HHHHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC
Q 024982 122 AADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV 192 (259)
Q Consensus 122 ~~~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~ 192 (259)
...+...++..|.++...--+| ...+++|++.++..+.+|+++|.. ||.-.+..++..
T Consensus 86 iGAL~a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~-------------gs~~~~~A~~~G 152 (252)
T 1xw8_A 86 IGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA-------------GSELIRAGKQYG 152 (252)
T ss_dssp HHHHHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET-------------TSHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHHHcC
Confidence 2334444555677776654443 447899999999999999999954 566778888888
Q ss_pred ccEEEE
Q 024982 193 CPVVVV 198 (259)
Q Consensus 193 ~PVlvV 198 (259)
.|++-=
T Consensus 153 l~~~~E 158 (252)
T 1xw8_A 153 LTTREE 158 (252)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888753
No 80
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=50.34 E-value=36 Score=30.41 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHhhhhhhCCccEEEEEEecCchHHHHHHHHH---hcCC-cEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 124 DLARPLKEAGFPYKIHIVKDHDMRERLCLEIE---RLSL-SAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~---~~~~-dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
+.+..+...|++++..+..-+...+.+.++++ +.++ +.||.|+-+... ...-+.-.+++||+=||
T Consensus 283 ~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~-----------Lpgvva~~t~~PVIgvP 351 (425)
T 2h31_A 283 KIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNG-----------LGPVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCC-----------HHHHHHHHCSSCEEECC
T ss_pred HHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccc-----------hHhHHhccCCCCEEEee
Confidence 34455566688888888876556666666654 4557 577777654333 34446667899999999
Q ss_pred CC
Q 024982 200 YP 201 (259)
Q Consensus 200 ~~ 201 (259)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 81
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=49.97 E-value=63 Score=22.61 Aligned_cols=51 Identities=8% Similarity=-0.080 Sum_probs=30.4
Q ss_pred chHHHHHHHHHh-cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 145 DMRERLCLEIER-LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 145 ~~~~~Il~~a~~-~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
+..+++ +..++ ..+|+|++...-..+..++ ...+++-++..+|++++....
T Consensus 37 ~~~~a~-~~l~~~~~~dlvi~D~~l~~~~~g~------~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 37 TGEAAV-EKVSGGWYPDLILMDIELGEGMDGV------QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp SHHHHH-HHHHTTCCCSEEEEESSCSSSCCHH------HHHHHHHHHCCCCEEEEESSS
T ss_pred ChHHHH-HHHhcCCCCCEEEEeccCCCCCCHH------HHHHHHHhCCCCCEEEEECCC
Confidence 345544 55554 7899999998642222222 334455444568998887643
No 82
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=48.59 E-value=18 Score=28.62 Aligned_cols=117 Identities=6% Similarity=-0.104 Sum_probs=66.6
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHH
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (259)
...+||++++.|+..+..+.+....|.+ .|.+++++-. +.+.+-+..+.
T Consensus 6 l~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T--------------------------~~A~~fi~~~~---- 54 (194)
T 1p3y_1 6 LKDKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMT--------------------------KTAEDLIPAHT---- 54 (194)
T ss_dssp GGGCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEEC--------------------------HHHHHHSCHHH----
T ss_pred cCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEc--------------------------hhHHHHHHHHH----
Confidence 3458999999999999999888877754 6888877632 11111111100
Q ss_pred HHHHHHHhhhhhhCCccEEEEEEecCc-hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEE
Q 024982 119 ATKAADLARPLKEAGFPYKIHIVKDHD-MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~v~v~~~v~~g~~-~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlv 197 (259)
+ +.+. +. +... .++.. +...+ +.+++ +|++|+---..+.+.++..|+-.+....++....+|+++
T Consensus 55 ------~-~~l~--~~-v~~~-~~~~~~~~~hi-~l~~~--aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl 120 (194)
T 1p3y_1 55 ------V-SYFC--DH-VYSE-HGENGKRHSHV-EIGRW--ADIYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIF 120 (194)
T ss_dssp ------H-GGGS--SE-EECT-TCSSSCCCCHH-HHHHH--CSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEE
T ss_pred ------H-HHhc--CC-Eecc-ccccCCCcCcc-ccccc--CCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEE
Confidence 1 1111 11 1111 11110 12222 33344 899998776666666663334445555555568899999
Q ss_pred EeC
Q 024982 198 VRY 200 (259)
Q Consensus 198 V~~ 200 (259)
+|.
T Consensus 121 ~Pa 123 (194)
T 1p3y_1 121 FPN 123 (194)
T ss_dssp EEC
T ss_pred EEC
Confidence 996
No 83
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=48.44 E-value=10 Score=28.33 Aligned_cols=53 Identities=6% Similarity=-0.056 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCC-Ccccc---cCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGF-GAEKR---GSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~-~~~~~---~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..+.|.+.+++++++.||+|-... ++-.+ . ..-..+++|-++.++||.++-+.
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~---~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTA---RARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHH---HHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHH---HHHHHHHHHHHHhCCCEEEEcCC
Confidence 478899999999999999996521 11111 0 11245666666678999999764
No 84
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=48.38 E-value=36 Score=31.35 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=56.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024982 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (259)
Q Consensus 49 D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (259)
|..-....||..|++ .+.+|..|+|.++...... ......+.. ...... ..++.+.++.+.+.
T Consensus 14 DLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~-~~~~~~g~~----~~g~~r--------~~Fl~~sL~~L~~~ 76 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESD-PSAFSPGSS----RAGVNR--------IRFLLESLKDLDSS 76 (537)
T ss_dssp CCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCC-TTSSSSBCS----SCBHHH--------HHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHh----cCCCEEEEEEeChhhhccc-ccccccccc----cCCHHH--------HHHHHHHHHHHHHH
Confidence 566667788877764 3668999999876432110 000000000 001111 11222334455566
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+.+.|+. ..+..|+ +.+.|.+.+++.+++-|+.-..
T Consensus 77 L~~~G~~--L~v~~G~-~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 77 LKKLGSR--LLVFKGE-PGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHHTTCC--CEEEESC-HHHHHHHHHTTSCEEEEEECCC
T ss_pred HHHcCCc--eEEEECC-HHHHHHHHHHHcCCCEEEEecc
Confidence 6655655 4445665 8999999999999999988653
No 85
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=48.33 E-value=40 Score=30.89 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.1
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++++|++.|..+|.-++..+.+. .|.+++.+|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccC
Confidence 78999999999998888777653 3568999998654
No 86
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=47.73 E-value=63 Score=21.94 Aligned_cols=48 Identities=8% Similarity=0.053 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+..++..++.++|+|++...-.+ ..++ ...+++-+..++|++++...
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~p~-~~g~------~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIMLPN-KDGV------EVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSTT-THHH------HHHHHHHTTCCSCEEEEEES
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCC-CCHH------HHHHHHHhcCCCCEEEEECC
Confidence 344557778889999999886322 2222 33445544556888887643
No 87
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=46.92 E-value=1.4e+02 Score=26.10 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=29.6
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+|++|++.|...|..++.++.+. .+.+++.+|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 47999999999999999888653 3678999998755
No 88
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=46.68 E-value=97 Score=24.69 Aligned_cols=34 Identities=15% Similarity=-0.083 Sum_probs=22.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
.+.||.|-+.++.....++-.+.. ...++++.++
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~V 44 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYPARVVAV 44 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEE
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEE
Confidence 347899999988777666655542 2345666555
No 89
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=45.03 E-value=39 Score=28.73 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=38.6
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~~~ 202 (259)
+.+...++++..........+..+.+.+...++|+||+.. |.+.+.. ++..+. ....+|+.++|-..
T Consensus 49 ~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~G-GDGTv~~--------v~~~l~~~~~~~pl~iIP~GT 116 (337)
T 2qv7_A 49 IKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAG-GDGTLNE--------VVNGIAEKPNRPKLGVIPMGT 116 (337)
T ss_dssp HHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE-CHHHHHH--------HHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEc-CchHHHH--------HHHHHHhCCCCCcEEEecCCc
Confidence 3344457776666555533455566666566788776533 2333333 345554 24678999999643
No 90
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=45.01 E-value=86 Score=25.76 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=79.0
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
-..-.=+++.+.-.....++.+.++|++.|..|- -|.-+++. .. .+...+... .+ .+......+
T Consensus 27 ~VtSANIACGfHAGDp~~M~~tv~lA~~~gV~IG-AHPgypDl-~G--FGRR~m~~s------~~----el~~~v~YQ-- 90 (250)
T 2dfa_A 27 LVSSANLACGFHGGSPGRILEAVRLAKAHGVAVG-AHPGFPDL-VG--FGRREMALS------PE----EVYADVLYQ-- 90 (250)
T ss_dssp TCSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EECCCSCT-TT--TTCSCCCCC------HH----HHHHHHHHH--
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHHHHcCCeEe-cCCCCCcc-cC--CCCCCCCCC------HH----HHHHHHHHH--
Confidence 4456778999998889999999999998887764 45544431 11 111111100 11 121111111
Q ss_pred HHHHHHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH 190 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~ 190 (259)
...+...++..|.++...--+| ...+++|++.++..+.+|+++|.. ||.-.+..++
T Consensus 91 --iGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-------------gs~~~~~A~~ 155 (250)
T 2dfa_A 91 --IGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLP-------------GTVYEEEARK 155 (250)
T ss_dssp --HHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT-------------TSHHHHHHHH
T ss_pred --HHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHHH
Confidence 2223344455566655443332 457899999999999999999853 5667788888
Q ss_pred CCccEEEE
Q 024982 191 CVCPVVVV 198 (259)
Q Consensus 191 s~~PVlvV 198 (259)
...|++-=
T Consensus 156 ~Gl~~~~E 163 (250)
T 2dfa_A 156 AGLRVVLE 163 (250)
T ss_dssp TTCCEEEE
T ss_pred cCCcEEEE
Confidence 88888653
No 91
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=43.93 E-value=1.3e+02 Score=24.34 Aligned_cols=35 Identities=3% Similarity=0.025 Sum_probs=27.7
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
.+|+|++.|..+|..++..+.+.. .++.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 589999999999999888887764 35677877554
No 92
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=43.44 E-value=35 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=28.8
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
+||++++.|+..+..+++....|.+..|.+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 37999999999999999998888664488887763
No 93
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=43.03 E-value=1.4e+02 Score=24.72 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCCCCC
Q 024982 148 ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDD 206 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~~~~ 206 (259)
..+.+.|-+.++|+|= .++.. +.-+-.-.++.+..||+++++....+.+
T Consensus 91 ~~Va~~al~aGa~iIN-------DVs~g---~~d~~m~~~va~~~~~~vlMH~~~~p~~ 139 (270)
T 4hb7_A 91 SEVAEACLKLGVDMIN-------DQWAG---LYDHRMFQIVAKYDAEIILMHNGNGNRD 139 (270)
T ss_dssp HHHHHHHHHHTCCEEE-------ETTTT---SSCTHHHHHHHHTTCEEEEECCCSSCCS
T ss_pred HHHHHHHHHhccceec-------ccccc---ccchhHHHHHHHcCCCeEEeccccCCcc
Confidence 3455667677888762 12222 4445566788889999999986554443
No 94
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=42.20 E-value=58 Score=24.28 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=25.0
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCC
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG 170 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~ 170 (259)
++.+...|++++..-+...+ .+.+.....+ +|.||+|+.-..
T Consensus 22 a~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~--~d~ii~Gspty~ 63 (161)
T 3hly_A 22 GRGLVKTGVAVEMVDLRAVD-PQELIEAVSS--ARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHTTCCEEEEETTTCC-HHHHHHHHHH--CSEEEEECCBSS
T ss_pred HHHHHhCCCeEEEEECCCCC-HHHHHHHHHh--CCEEEEEcCCcC
Confidence 33444457776655444443 4445444444 799999997553
No 95
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=42.06 E-value=1.4e+02 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHhCCCC-CEEEEEEEe
Q 024982 51 SDESAFAVRWAVHHYLRPG-DAVILVHVS 78 (259)
Q Consensus 51 s~~s~~al~~A~~lA~~~~-a~l~llhV~ 78 (259)
++.+..++..|.+|+. .+ .+++++.+-
T Consensus 15 ~~~~~eal~~A~~L~e-~g~~~V~av~~G 42 (320)
T 1o97_D 15 RPVSLELIGAANGLKK-SGEDKVVVAVIG 42 (320)
T ss_dssp CTHHHHHHHHHHHHCS-STTCEEEEEEES
T ss_pred CHHHHHHHHHHHHHhh-CCCCcEEEEEEC
Confidence 4678999999999987 66 588888664
No 96
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=41.60 E-value=56 Score=27.70 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=38.5
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh---cCCccEEEEeCCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYPD 202 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~---~s~~PVlvV~~~~ 202 (259)
+.+.+.++++......+..-...+.+.+...++|+||+.. |.+.+. .++..+.+ ...+|+.++|-..
T Consensus 51 ~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~G-GDGTl~--------~v~~~l~~~~~~~~~plgiiP~Gt 120 (332)
T 2bon_A 51 MLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG-GDGTIN--------EVSTALIQCEGDDIPALGILPLGT 120 (332)
T ss_dssp HHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE-SHHHHH--------HHHHHHHHCCSSCCCEEEEEECSS
T ss_pred HHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEc-cchHHH--------HHHHHHhhcccCCCCeEEEecCcC
Confidence 3344457777766555433344555555555788776532 233333 34566654 4678999998653
No 97
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=41.58 E-value=9.8 Score=28.80 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=34.8
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCCC-cccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 145 DMRERLCLEIERLSLSAVIMGSRGFG-AEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 145 ~~~~~Il~~a~~~~~dLIVlG~~~~~-~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
...+.|.+.+++++++.||+|-.-.. +-....-...-..+..+..+.++||.+|-+.
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr 99 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDER 99 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCC
Confidence 36889999999999999999965210 0000000000123345555668999998754
No 98
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=41.51 E-value=1.4e+02 Score=24.97 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=38.0
Q ss_pred HhhhhhhCCccEEEEEEec----Cch--HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982 125 LARPLKEAGFPYKIHIVKD----HDM--RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g----~~~--~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV 198 (259)
+.+.+.+.++.+-.....| .++ .....+.+.+.++|.|-.+..+ .. -+++...|++||++.
T Consensus 163 v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~-----e~--------~~~vv~~~~vPVv~~ 229 (295)
T 3glc_A 163 LVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE-----KG--------FERIVAGCPVPIVIA 229 (295)
T ss_dssp HHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT-----TT--------HHHHHHTCSSCEEEE
T ss_pred HHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH-----HH--------HHHHHHhCCCcEEEE
Confidence 4555555677765543331 222 2346678889999988777431 11 267777889998765
Q ss_pred e
Q 024982 199 R 199 (259)
Q Consensus 199 ~ 199 (259)
-
T Consensus 230 G 230 (295)
T 3glc_A 230 G 230 (295)
T ss_dssp C
T ss_pred E
Confidence 4
No 99
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=41.48 E-value=83 Score=21.54 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=27.5
Q ss_pred HHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 150 LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 150 Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
.++..++.++|+|++...-.+ ..+. ...+++-++.+ +|++++...
T Consensus 38 a~~~~~~~~~dlii~d~~l~~-~~g~------~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 38 AVQRVETLKPDIVIIDVDIPG-VNGI------QVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHHCCSEEEEETTCSS-SCHH------HHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHhcCCCEEEEecCCCC-CChH------HHHHHHHhcCCCCeEEEEeCC
Confidence 335566678999999986322 2222 34455554444 888888654
No 100
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=41.38 E-value=23 Score=28.22 Aligned_cols=37 Identities=19% Similarity=0.004 Sum_probs=28.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
..+||++++.|+-.+..+++....|.+..|.+++++-
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4589999999999999998888777552577777753
No 101
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=41.09 E-value=29 Score=20.29 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.5
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcE
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSA 161 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dL 161 (259)
.-.+..+.....|..++|+.++++.++|-
T Consensus 9 kkkvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 9 KKKVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred cceeEEEEeeCCchhHHHHHHHHHccchh
Confidence 45678888888889999999999987764
No 102
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=41.07 E-value=1.4e+02 Score=23.98 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCcEEEEecC
Q 024982 147 RERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~ 167 (259)
.+++++..++.++|+||+..-
T Consensus 90 ~~~~~~~l~~~~~Dliv~agy 110 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAGY 110 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESSC
T ss_pred cHHHHHHHHhcCCCEEEEcCh
Confidence 367888899999999999654
No 103
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=40.93 E-value=2.1e+02 Score=25.99 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=72.7
Q ss_pred CeEEEee--cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 42 RKIGVAV--DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 42 ~rILVav--D~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
+++|+=+ |.--....||..|+.. +.++..+++.++.......+.... . ..... ..++.
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~----~----~~~~r--------~~Fl~ 99 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFP----K----TGALR--------GGFLM 99 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCB----S----SCHHH--------HHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCC----C----CCHHH--------HHHHH
Confidence 4455554 5566677888887653 457888888877432111000000 0 01111 11222
Q ss_pred HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC--ccEEE
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV--CPVVV 197 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~--~PVlv 197 (259)
+.++.+.+.+++.|+.+.+ ..|+ +.+.|.+.+++.+++-|+.-..-.....+ . -....+.++... |++..
T Consensus 100 ~sL~~L~~~L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~V~~~~~~~p~~~~----r-d~~v~~~l~~~gv~i~~~~ 171 (525)
T 2j4d_A 100 ECLVDLRKNLMKRGLNLLI--RSGK-PEEILPSLAKDFGARTVFAHKETCSEEVD----V-ERLVNQGLKRVGNSTKLEL 171 (525)
T ss_dssp HHHHHHHHHHHHTTCCCEE--EESC-HHHHHHHHHHHHTCSEEEEECCCSHHHHH----H-HHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHHHHHcCCeEEE--EeCC-HHHHHHHHHHHcCCCEEEEeccCCHHHHH----H-HHHHHHHHHhcCCceEEEE
Confidence 3355566666666776544 5565 99999999999999999987543222111 1 112233344444 67777
Q ss_pred EeCC
Q 024982 198 VRYP 201 (259)
Q Consensus 198 V~~~ 201 (259)
+...
T Consensus 172 ~~~~ 175 (525)
T 2j4d_A 172 IWGS 175 (525)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 6543
No 104
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=40.60 E-value=88 Score=21.56 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+..++..++.++|+|++...-.+...+. .....+-+...+|++++...
T Consensus 43 ~~~a~~~~~~~~~dlii~d~~~~~~~~g~------~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 43 GEEAVRCAPDLRPDIALVDIMLCGALDGV------ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCCSSSCHH------HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCCHH------HHHHHHHhCCCCCEEEEecC
Confidence 34455667777899999998643122222 23444444456888888654
No 105
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=39.97 E-value=1.4e+02 Score=23.55 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=29.1
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++++|++.|..+|..++.++.+. +.+++.+|+...
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 78999999999999998887664 368889998754
No 106
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=39.84 E-value=26 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=28.1
Q ss_pred CCCCeEEEeecCChhHHH-HHHHHHHHhCCCCCEEEEEE
Q 024982 39 LARRKIGVAVDLSDESAF-AVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~-al~~A~~lA~~~~a~l~llh 76 (259)
...+||++++.|+-.... +++....|.+ .|.+++++-
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~ 40 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVV 40 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 345899999999977665 7777777655 588887753
No 107
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=38.26 E-value=1.5e+02 Score=23.54 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=23.6
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
|+||.|-+.++-....++-.+.+- ...++++.++-.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Vis 37 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLIT 37 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEE
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEE
Confidence 478999888887777776666542 335577776544
No 108
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=37.92 E-value=2e+02 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=28.1
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
..+||+|++.|...|..++..+.+ .|-++..+|+..
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~ 51 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKN 51 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEc
Confidence 347999999999999877766543 478999999864
No 109
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=37.17 E-value=87 Score=24.39 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=27.1
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
+.+.+.+.+++..-+..++..+.+.+...+ +|.||+++.-
T Consensus 41 ~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~ 80 (204)
T 2amj_A 41 GTLRDLGHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPG 80 (204)
T ss_dssp HHHHHTTCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEEC
T ss_pred HHHHHcCCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCc
Confidence 333444667766666554456677777766 8999999964
No 110
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=37.09 E-value=62 Score=27.02 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=38.3
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh-cCCccEEEEeCCC
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH-HCVCPVVVVRYPD 202 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~-~s~~PVlvV~~~~ 202 (259)
...+++++.....+.+-+..+.+.+.+ ++|.||+.. |.+.+.. +...+.. ...+|+.++|...
T Consensus 36 ~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G-GDGTl~~--------v~~~l~~~~~~~~l~iiP~Gt 99 (304)
T 3s40_A 36 AAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG-GDGTVFE--------CTNGLAPLEIRPTLAIIPGGT 99 (304)
T ss_dssp HHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE-CHHHHHH--------HHHHHTTCSSCCEEEEEECSS
T ss_pred HHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc-cchHHHH--------HHHHHhhCCCCCcEEEecCCc
Confidence 334777777766665556667766654 788776633 2333333 3444444 3678999999753
No 111
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=35.03 E-value=36 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=28.5
Q ss_pred CCCeEEEeecCChhHH-HHHHHHHHHhCCCCCEEEEE
Q 024982 40 ARRKIGVAVDLSDESA-FAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 40 ~~~rILVavD~s~~s~-~al~~A~~lA~~~~a~l~ll 75 (259)
..+||++++.|+-... .+++....|.+ .|.+++++
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv 41 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPF 41 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 4589999999998888 88888877765 58887775
No 112
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.76 E-value=1.1e+02 Score=21.11 Aligned_cols=47 Identities=11% Similarity=-0.017 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++..++.++|+|++.. - ....+. ....++-+.. .+|++++...
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~-~-~~~~g~------~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV-F-EGEESL------NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC-T-TTHHHH------HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHhccCCCEEEEeC-C-CCCcHH------HHHHHHHHHCCCCCEEEEECC
Confidence 44455777788999999998 3 322222 2344444444 4888888654
No 113
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=34.03 E-value=1.3e+02 Score=24.73 Aligned_cols=130 Identities=10% Similarity=0.009 Sum_probs=80.6
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (259)
-..-.=+++.+.-.....++.+.++|++.|..|- -|.-+++. .. .+...+... .+ .+......+
T Consensus 33 ~VtSANIACGfHAGDp~~M~~Tv~lA~~~gV~IG-AHPgypDl-~G--FGRR~m~~s------~~----el~~~v~YQ-- 96 (252)
T 2x5e_A 33 LVDQANLACGFHAGDPLTMRRAVELAVRHGVSIG-AHPAYPDL-SG--FGRRSLACS------AE----EVHAMVLYQ-- 96 (252)
T ss_dssp GCSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EECCCSCT-TT--TTCSCCCCC------HH----HHHHHHHHH--
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHHHHcCCeee-cCCCCCcc-cC--CCCCCCCCC------HH----HHHHHHHHH--
Confidence 3456778999998889999999999998887764 45544431 11 111111100 11 111111111
Q ss_pred HHHHHHhhhhhhCCccEEEEEEec---------CchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc
Q 024982 120 TKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH 190 (259)
Q Consensus 120 ~~~~~~~~~~~~~~v~v~~~v~~g---------~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~ 190 (259)
...+...++..|.++...--+| ...+++|++.++..+.+|+++|.. + --||.-.+..++
T Consensus 97 --iGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-------~---~~gs~~~~~A~~ 164 (252)
T 2x5e_A 97 --IGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA-------L---ADNGRELELADE 164 (252)
T ss_dssp --HHHHHHHHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC-------C---SCCHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC-------C---CCCCHHHHHHHH
Confidence 2223444455677766554443 447899999999999999999954 1 226677888888
Q ss_pred CCccEEE
Q 024982 191 CVCPVVV 197 (259)
Q Consensus 191 s~~PVlv 197 (259)
...|++-
T Consensus 165 ~Gl~~~~ 171 (252)
T 2x5e_A 165 ADVPLLF 171 (252)
T ss_dssp HTCCEEE
T ss_pred cCCcEEE
Confidence 8888765
No 114
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=33.91 E-value=64 Score=23.49 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=38.6
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC--CccEEEE
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVVVV 198 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s--~~PVlvV 198 (259)
+..|.++... -.+-+.+.+++.+++.++|+|.+...-...... +..+.+.+-+.. .++|++=
T Consensus 28 ~~~G~~Vi~l--G~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~-----~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 28 TNAGFNVVNI--GVLSPQELFIKAAIETKADAILVSSLYGQGEID-----CKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHTTCEEEEE--EEEECHHHHHHHHHHHTCSEEEEEECSSTHHHH-----HTTHHHHHHHTTCTTCEEEEE
T ss_pred HHCCCEEEEC--CCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHH-----HHHHHHHHHhcCCCCCEEEEE
Confidence 3346665433 334489999999999999999998875444332 244555554432 2555443
No 115
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=33.84 E-value=1.7e+02 Score=23.03 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCcEEEEecC
Q 024982 148 ERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~ 167 (259)
+++++..++.++|++|+..-
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y 89 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGF 89 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEeCc
Confidence 67888899999999999654
No 116
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=33.06 E-value=1.3e+02 Score=24.53 Aligned_cols=64 Identities=9% Similarity=-0.057 Sum_probs=38.5
Q ss_pred hhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc-CCccEEEEe
Q 024982 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVR 199 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~-s~~PVlvV~ 199 (259)
+...|.++...=. +-+.+.+++.+++.++|+|.+..........+ ..+.+.+-+. .++||++--
T Consensus 147 L~~~G~~Vi~LG~--~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~-----~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 147 LRANGYNVVDLGR--DVPAEEVLAAVQKEKPIMLTGTALMTTTMYAF-----KEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHTTCEEEEEEE--ECCSHHHHHHHHHHCCSEEEEECCCTTTTTHH-----HHHHHHHHTTTCCCCEEEES
T ss_pred HHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEEeeccCCHHHH-----HHHHHHHHhcCCCCcEEEEC
Confidence 3444666543322 34789999999999999999988644333222 2233333333 237777654
No 117
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=32.42 E-value=2.6e+02 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+.+|++|++.|.-.|..++.++.+ .|.+++.+++...
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 348899999999999998888754 3789999998754
No 118
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=32.29 E-value=1.3e+02 Score=20.94 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh---cCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~---~s~~PVlvV~~~ 201 (259)
.+..++.+++.++|+|++...-. ...++ ...+++-+ ...+|++++...
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~-~~~g~------~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDIGLP-IANGF------EVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECTTCG-GGCHH------HHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHhhcCCCCEEEEeCCCC-CCCHH------HHHHHHHhcccccCCCEEEEeCC
Confidence 44455777888999999988632 11222 23444443 235888888754
No 119
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=32.14 E-value=1.1e+02 Score=20.34 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc---CCccEEEE
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVV 198 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~---s~~PVlvV 198 (259)
.+..++..++.++|+|++...-.+...+. ...+++-+. ..+|++++
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~~~~~~g~------~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDLSAGQNGY------LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCGGGCBHH------HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCHH------HHHHHHhcCccccCCCEEEE
Confidence 34445666777899999988632122222 234455443 45888888
No 120
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=32.10 E-value=29 Score=29.59 Aligned_cols=67 Identities=10% Similarity=-0.037 Sum_probs=46.4
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
.+.+.-+-..-+..-....++++.|++.+..+|+--+.+.....+. .+......+.+++++||.+--
T Consensus 23 ~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~---~~~~~~~~~A~~~~VPVaLHl 89 (306)
T 3pm6_A 23 RTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADS---LLVRTAASACRAASVPITLHL 89 (306)
T ss_dssp HHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTT---HHHHHHHHHHHHCSSCEEEEE
T ss_pred HHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccH---HHHHHHHHHHHHCCCCEEEEc
Confidence 3447777777777777999999999999999988766543221111 222345566778899997754
No 121
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=31.07 E-value=1.1e+02 Score=21.14 Aligned_cols=44 Identities=11% Similarity=-0.122 Sum_probs=28.0
Q ss_pred HHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 151 CLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 151 l~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
++..++.++|+|++...-. ...++ ...+++-+.. .+|++++...
T Consensus 52 ~~~l~~~~~dlvi~D~~l~-~~~g~------~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 52 KGPPADTRPGIVILDLGGG-DLLGK------PGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp GCCCTTCCCSEEEEEEETT-GGGGS------TTHHHHHGGGTTCCEEEEESC
T ss_pred HHHHhccCCCEEEEeCCCC-CchHH------HHHHHHHhhCCCCcEEEEeCC
Confidence 3555778899999998633 22332 3455555544 4889888754
No 122
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=30.56 E-value=1.5e+02 Score=24.24 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
..++ ++.+++.++|+|++...-...+.++ .....+-+...+||+++...
T Consensus 194 g~eA-l~~~~~~~~dlvl~D~~MPd~mdG~------e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 194 RGEA-LEAVTRRTPGLVLADIQLADGSSGI------DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHH-HHHHHHCCCSEEEEESCCTTSCCTT------TTTHHHHHHTTCCEEEEESC
T ss_pred HHHH-HHHHHhCCCCEEEEcCCCCCCCCHH------HHHHHHHhcCCCCEEEEeCC
Confidence 3444 4667788999999998733234443 23444444448999999864
No 123
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.40 E-value=1.3e+02 Score=20.41 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++..++.++|+|++...-.+ ..++ ...+++-+.. .+|++++...
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~------~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 40 GVDALELLGGFTPDLMICDIAMPR-MNGL------KLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHHTTCCCSEEEECCC------CH------HHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CCHH------HHHHHHHhcCCCCCEEEEEcC
Confidence 444557778889999999986322 1222 3344444443 4888888654
No 124
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=29.61 E-value=1.1e+02 Score=22.60 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=23.9
Q ss_pred hhhhhCCccEEEEEEecC-chHHHHHHHHHhcCCcEEEEecCCCC
Q 024982 127 RPLKEAGFPYKIHIVKDH-DMRERLCLEIERLSLSAVIMGSRGFG 170 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~-~~~~~Il~~a~~~~~dLIVlG~~~~~ 170 (259)
+.+.+.|++++..-+... + .+.++.... ++|.||+|+.-..
T Consensus 27 ~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 27 NGITKTGVGVDVVDLGAAVD-LQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHTTCEEEEEESSSCCC-HHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHCCCeEEEEECcCcCC-HHHHHHHHH--hCCEEEEEcCcCC
Confidence 334444776665544433 3 444544443 4899999997554
No 125
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=29.40 E-value=57 Score=24.58 Aligned_cols=61 Identities=11% Similarity=-0.014 Sum_probs=37.3
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC--CccEEEEe
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVVVVR 199 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s--~~PVlvV~ 199 (259)
.|.++ ...-.+.+.+.+++.+++.++|+|.+..........+ ..+.+.+-+.. .++|++=-
T Consensus 45 ~G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~-----~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 45 AGFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLM-----KRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp TTCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHH-----HHHHHHHHHTTCTTSCEEEEE
T ss_pred CCCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHH-----HHHHHHHHhcCCCCCEEEEeC
Confidence 35543 3344445889999999999999999988644433332 33344443332 26666543
No 126
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=29.22 E-value=1.8e+02 Score=21.77 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
....++.++..++|+|++...-. ...++ .....+-...+.|++++..
T Consensus 47 ~~~al~~~~~~~~dlvi~D~~~p-~~~g~------~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 47 GQEAVELAELHKPDLVIMDVKMP-RRDGI------DAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCS-SSCHH------HHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCCCC-CCChH------HHHHHHHhcCCCCEEEEec
Confidence 33444667777899999998632 22222 3455555556678888854
No 127
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.09 E-value=1.3e+02 Score=20.20 Aligned_cols=49 Identities=8% Similarity=-0.138 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc---CCccEEEEeCCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYPD 202 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~---s~~PVlvV~~~~ 202 (259)
.+..++..++.++|+|++...-.+ ..++ ...+++-+. ..+|++++....
T Consensus 36 ~~~a~~~l~~~~~dlii~D~~l~~-~~g~------~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 36 GTDALHAMSTRGYDAVFIDLNLPD-TSGL------ALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHHHHSCCSEEEEESBCSS-SBHH------HHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCHH------HHHHHHHhhhccCCCCEEEEECCc
Confidence 444557778889999999986322 2222 344455443 448888887543
No 128
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=29.06 E-value=1.2e+02 Score=21.21 Aligned_cols=49 Identities=2% Similarity=-0.001 Sum_probs=30.3
Q ss_pred hHHHHHHHHHh-cCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 146 MRERLCLEIER-LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 146 ~~~~Il~~a~~-~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
..+++....+. ..+|+|++...-. ...++ ...+++-+.. .+||+++...
T Consensus 54 ~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~------~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 54 RAAQIVQRTDGLDAFDILMIDGAAL-DTAEL------AAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp CHHHHTTCHHHHTTCSEEEEECTTC-CHHHH------HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCC-CccHH------HHHHHHHHhCCCCcEEEEeCC
Confidence 56666666666 8899999998632 22222 3344444444 4888888654
No 129
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=28.66 E-value=1.5e+02 Score=20.75 Aligned_cols=48 Identities=17% Similarity=0.026 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++.+++.++|+|++...-.. ..++ ...+++-+.. .+|++++...
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~-~~g~------~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPV-KTGL------EVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSS-SCHH------HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHhhccCCCEEEEeCCCCC-CcHH------HHHHHHHHhCCCCeEEEEeCC
Confidence 445567788889999999986322 2222 3444554444 4888888654
No 130
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=28.40 E-value=2.7e+02 Score=23.54 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=36.4
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC---CcccccCCCcCCcHHH-HHhhcCCccEEEEeCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVSD-YCVHHCVCPVVVVRYP 201 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~---~~~~~~~~~l~gs~~~-~ll~~s~~PVlvV~~~ 201 (259)
.+.+.|++++.... . ....+++ ++|.|++|+.+- +.+-. ..|.-.- -+.++..+|++++-+.
T Consensus 167 ~L~~~gI~vtli~D--s-a~~~~m~-----~vd~VivGAd~i~~nG~v~n----kiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 167 ALCHLNVPVTVVLD--A-AVGYIME-----KADLVIVGAEGVVENGGIIN----KIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp HHHTTTCCEEEECG--G-GHHHHGG-----GCSEEEEECSEECTTSCEEE----ETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHcCCCEEEEeh--h-HHHHHHH-----hCCEEEECceEEecCCCeee----hhhhHHHHHHHHHhCCCEEEEecc
Confidence 34445887655422 2 3444433 699999999852 22222 2465433 4556678999999543
No 131
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=28.27 E-value=64 Score=25.24 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=27.3
Q ss_pred hCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC
Q 024982 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF 169 (259)
Q Consensus 131 ~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~ 169 (259)
..|.++. ..-.+-+.+.+++.+++.++|+|.+.....
T Consensus 114 ~~G~~v~--~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~ 150 (210)
T 1y80_A 114 SGGFTVY--NLGVDIEPGKFVEAVKKYQPDIVGMSALLT 150 (210)
T ss_dssp HTTCEEE--ECCSSBCHHHHHHHHHHHCCSEEEEECCSG
T ss_pred HCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEecccc
Confidence 3355543 344455899999999999999999988643
No 132
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=28.17 E-value=2.2e+02 Score=22.51 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCcEEEEecC
Q 024982 147 RERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~ 167 (259)
.+++++..++.++|+||+..-
T Consensus 72 d~~~~~~l~~~~~Dliv~agy 92 (215)
T 3tqr_A 72 ESTLQKTIDHYDPKLIVLAGF 92 (215)
T ss_dssp HHHHHHHHHTTCCSEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEEccc
Confidence 457889999999999999654
No 133
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.99 E-value=1.5e+02 Score=20.41 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=15.1
Q ss_pred EEEeecCChhHHHHHHHHHHH
Q 024982 44 IGVAVDLSDESAFAVRWAVHH 64 (259)
Q Consensus 44 ILVavD~s~~s~~al~~A~~l 64 (259)
++|.+|..+.+..|+++...+
T Consensus 54 vvvvvddkewaekairfvksl 74 (134)
T 2l69_A 54 VVVVVDDKEWAEKAIRFVKSL 74 (134)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEEccHHHHHHHHHHHHhc
Confidence 556668777888887777665
No 134
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=27.84 E-value=70 Score=25.46 Aligned_cols=34 Identities=12% Similarity=-0.150 Sum_probs=27.2
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~ll 75 (259)
..+||++++.|+..+..+++....|.+ .+ +++++
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv 51 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAV 51 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEE
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEE
Confidence 458999999999999888888888765 45 77665
No 135
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=27.83 E-value=55 Score=22.85 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=30.6
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
++|||+++...-.+.-.++.....++..|-++.+-|+...
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~ 42 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPET 42 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSS
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHH
Confidence 4789999987766667888888888888888877776543
No 136
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=27.68 E-value=85 Score=25.80 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCCCCCCCCCeeeecCCCCCCcchhh
Q 024982 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDHV 225 (259)
Q Consensus 146 ~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~~~~~~~~l~av~~~~~~~~~~~~ 225 (259)
...-+++.++++++|++|+.+.... ..+- .-++.++....+|++++.+..... ..+++
T Consensus 52 ~~~~~~~~~~~~~pDfvI~isPN~a-~PGP------~~ARE~l~~~~iP~IvI~D~p~~K---------------~kd~l 109 (283)
T 1qv9_A 52 AVEMALDIAEDFEPDFIVYGGPNPA-APGP------SKAREMLADSEYPAVIIGDAPGLK---------------VKDEM 109 (283)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSCTT-SHHH------HHHHHHHHTSSSCEEEEEEGGGGG---------------GHHHH
T ss_pred HHHHhhhhhhhcCCCEEEEECCCCC-CCCc------hHHHHHHHhCCCCEEEEcCCcchh---------------hHHHH
Confidence 3344456668999999999886433 2222 467889999999999997542110 12556
Q ss_pred hccccceeeee
Q 024982 226 DRKLKGFFFLF 236 (259)
Q Consensus 226 ~~~~~~~~~~~ 236 (259)
.++..||+...
T Consensus 110 ~~~g~GYIivk 120 (283)
T 1qv9_A 110 EEQGLGYILVK 120 (283)
T ss_dssp HHTTCEEEEET
T ss_pred HhcCCcEEEEe
Confidence 67777877654
No 137
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=27.45 E-value=1.6e+02 Score=22.53 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHhhhhhhCCccEEEEEEecCc------hHHHHHHHHHhcCCcEEEE
Q 024982 124 DLARPLKEAGFPYKIHIVKDHD------MRERLCLEIERLSLSAVIM 164 (259)
Q Consensus 124 ~~~~~~~~~~v~v~~~v~~g~~------~~~~Il~~a~~~~~dLIVl 164 (259)
.+.+.+...|.++++.....++ ....-.+.+++.++|+.|=
T Consensus 37 ~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfIS 83 (180)
T 3qay_A 37 VLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIE 83 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEE
Confidence 3445555567775443333222 2566778899999998874
No 138
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.22 E-value=1.1e+02 Score=23.12 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=25.0
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHH----HhcCCcEEEEe
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEI----ERLSLSAVIMG 165 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a----~~~~~dLIVlG 165 (259)
++.+.+.|+++....+.++++ +.|.+.. ...++|+||..
T Consensus 46 ~~~L~~~G~~v~~~~iV~Dd~-~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 46 KQLLIENGHKIIGYSLVPDDK-IKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHTTCEEEEEEEECSCH-HHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEEEeCCCH-HHHHHHHHHHHhcCCCCEEEec
Confidence 344455599988888888764 3443333 34568999873
No 139
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=26.84 E-value=1.7e+02 Score=20.60 Aligned_cols=48 Identities=13% Similarity=-0.096 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++.+++.++|+|+++..-.+ ..+. .....+-+.. .+|++++-..
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~------~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 40 PLDALEALKGTSVQLVISDMRMPE-MGGE------VFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp HHHHHHHHTTSCCSEEEEESSCSS-SCHH------HHHHHHHHHCTTSEEEEEECG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CCHH------HHHHHHHHhCCCCcEEEEecC
Confidence 444557777888999999986322 1221 2344454443 4888888643
No 140
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=26.73 E-value=1.8e+02 Score=22.75 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 54 SAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 54 s~~al~~A~~lA~~~~a~l~llhV 77 (259)
+...++.++++|+..|++..++|.
T Consensus 74 ~~~~~~~~i~~A~~lGa~~v~~~~ 97 (254)
T 3ayv_A 74 TLRRLLFGLDRAAELGADRAVFHS 97 (254)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCEEEECC
Confidence 456788899999999999888774
No 141
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=26.61 E-value=1.1e+02 Score=21.88 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
.++-++.+++.++|+|++..+- ....++ .+. +.+++..+||+++..
T Consensus 42 g~eAl~~~~~~~~DlvllDi~m-P~~~G~------el~-~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNL-DGEPSY------PVA-DILAERNVPFIFATG 87 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSS-SSCCSH------HHH-HHHHHTCCSSCCBCT
T ss_pred HHHHHHHHHhCCCCEEEEecCC-CCCCHH------HHH-HHHHcCCCCEEEEec
Confidence 3344477788999999998872 223332 233 445566789888864
No 142
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=26.60 E-value=2.8e+02 Score=23.20 Aligned_cols=84 Identities=7% Similarity=0.030 Sum_probs=49.2
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
.+||.|-+.++-.+..+|-++.+- ...++++.++-...+. . . +
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~~~---------------------~---~----~-------- 147 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNHQD---------------------L---R----S-------- 147 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESSST---------------------T---H----H--------
T ss_pred CcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECcHH---------------------H---H----H--------
Confidence 478999998887776666665442 3346677665432221 0 0 0
Q ss_pred HHHHHhhhhhhCCccEEEEEEec--C-chHHHHHHHHHhcCCcEEEEecCC
Q 024982 121 KAADLARPLKEAGFPYKIHIVKD--H-DMRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g--~-~~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
+ ....|+++...-... + ...+++++..++.++|+||+..-+
T Consensus 148 ----~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 148 ----M---VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ----H---HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ----H---HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 1 122366654421111 1 123578899999999999997643
No 143
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.51 E-value=1.8e+02 Score=20.86 Aligned_cols=47 Identities=6% Similarity=-0.052 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh---cCCccEEEEeCC
Q 024982 148 ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYP 201 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~---~s~~PVlvV~~~ 201 (259)
.+-++..++.++|+|++... .....++ .+.+++=. ...+||+++...
T Consensus 47 ~~al~~~~~~~~DlillD~~-MP~mdG~------el~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 47 LTALPMLKKGDFDFVVTDWN-MPGMQGI------DLLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp HHHHHHHHHHCCSEEEEESC-CSSSCHH------HHHHHHHHSTTTTTCCEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEcCC-CCCCCHH------HHHHHHHhCCCCCCCeEEEEECC
Confidence 33446777889999999987 3333443 33444422 245889888754
No 144
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=25.78 E-value=1.3e+02 Score=26.40 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=38.4
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC---CcccccCCCcCCcHHHHHh-hcCCccEEEEeC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRY 200 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~---~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~ 200 (259)
.+...|++++... ++....+ .++.++|.||+|+.+- +.+-. -.|.-.-.++ ++..+|++++-+
T Consensus 232 eL~~~GIpvtlI~---Dsa~~~~---M~~~~Vd~ViVGAD~V~aNG~v~N----KiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 232 ECVQEDIPCTLIC---DGAASSL---MLNRKIDAVVVGADRICQNGDTAN----KIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHTTCCEEEEC---GGGHHHH---HHHSCCCEEEECCSEECTTCCEEE----ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHcCCCEEEEe---hhHHHHH---hhcCCCCEEEECccEEecCCCEee----cccHHHHHHHHHHcCCCEEEeCC
Confidence 3444588876543 2234433 4557899999999753 22211 2466555444 557799999954
No 145
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=25.49 E-value=55 Score=25.68 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=36.1
Q ss_pred hCCccEEEEEEecCchHHHHHHHHHhcC--CcEEEEecCCCCcccccCCCcCCcHHHHHh-hcCCccEEEEeC
Q 024982 131 EAGFPYKIHIVKDHDMRERLCLEIERLS--LSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRY 200 (259)
Q Consensus 131 ~~~v~v~~~v~~g~~~~~~Il~~a~~~~--~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll-~~s~~PVlvV~~ 200 (259)
+.|++++... ++....+ .++.+ +|+|++|+++-..-... -+..|+-.-.++ ++..+|++++-+
T Consensus 28 ~~gI~vtlI~---Dsa~~~~---m~~~~~~Vd~VivGAd~v~~nG~v-~nkiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 28 YDKIPSTLIT---DSSIAYR---IRTSPIPIKAAFVGADRIVRNGDT-ANKIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHTCCBEEBC---GGGHHHH---HHHCSSCEEEEEECCSEECTTSCE-EEETTHHHHHHHHHHHTCEEEEECC
T ss_pred HcCCCEEEEe---chHHHHH---HHhCCCCCCEEEECccEEecCCCE-EecccHHHHHHHHHHcCCCEEEecc
Confidence 3488876543 2234333 34456 99999999753211111 002466555554 456799999854
No 146
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=25.42 E-value=1.3e+02 Score=26.31 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=38.2
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC---CcccccCCCcCCcHHHHH-hhcCCccEEEEeC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVSDYC-VHHCVCPVVVVRY 200 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~---~~~~~~~~~l~gs~~~~l-l~~s~~PVlvV~~ 200 (259)
..+.+.|++++... ++....+ .++.++|.|++|+.+- +.+-. -.|.-.-.+ .++.++|++++-+
T Consensus 227 ~eL~~~GIpvtlI~---Dsa~~~~---M~~~~Vd~ViVGAD~V~aNG~v~N----KiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 227 WELMQGGIDVTLIT---DSMAAHT---MKEKQISAVIVGADRIAKNGDTAN----KIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHTTTCEEEEEC---GGGHHHH---HHHTTCCEEEECCSEEETTCCEEE----ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHcCCCEEEEe---hhHHHHH---hhhcCCCEEEECccEEecCCCEEe----cccHHHHHHHHHHcCCCEEEecc
Confidence 34445587766543 2234433 4457799999999742 22221 246655544 4557799999854
No 147
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=25.29 E-value=2e+02 Score=21.03 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=29.3
Q ss_pred HhhhhhhCCccEEEEEEe-cCchHHHHHHHHHhcCCcEEEEecC
Q 024982 125 LARPLKEAGFPYKIHIVK-DHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~-g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+...+...|+.++..... +......|-+.....-+=+||+|.+
T Consensus 27 V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~k 70 (130)
T 1v95_A 27 VGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQ 70 (130)
T ss_dssp HHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHH
T ss_pred HHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEech
Confidence 445555568888887653 4557777766666666777888875
No 148
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.15 E-value=1.1e+02 Score=21.05 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=28.7
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
+..+..+...++..+.+++.-+++++..++..+|+-..
T Consensus 47 kkynativvvvvddkewaekairfvkslgaqvliiiyd 84 (134)
T 2l69_A 47 KKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYD 84 (134)
T ss_dssp TCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred HHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 33456667777777778888999999999888777654
No 149
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=25.01 E-value=1.9e+02 Score=20.54 Aligned_cols=48 Identities=6% Similarity=-0.029 Sum_probs=28.3
Q ss_pred HHHHHHHHHhc--CCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERL--SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~--~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++.+++. ++|+|++...-.. ..++ ...+++-+.. .+||+++...
T Consensus 70 ~~~al~~l~~~~~~~dliilD~~l~~-~~g~------~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 70 GEEAVIKYKNHYPNIDIVTLXITMPK-MDGI------TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHHHHGGGCCEEEECSSCSS-SCHH------HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHHhcCCCCCEEEEeccCCC-ccHH------HHHHHHHhhCCCCcEEEEecc
Confidence 33444666666 7999999986322 2222 2344554444 3888888653
No 150
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=24.94 E-value=2e+02 Score=24.98 Aligned_cols=94 Identities=5% Similarity=-0.002 Sum_probs=52.2
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCC---------E-----EEEEEEecCCcccCCCCCCCCccccccchhhhHHHH
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGD---------A-----VILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQ 107 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a---------~-----l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (259)
=+|-|.+....+|..-.+.|.++.+..|. . =.++|+..++.+ ..+..
T Consensus 13 ~~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F-------------------~se~~ 73 (371)
T 3qi7_A 13 FKVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENF-------------------TSNID 73 (371)
T ss_dssp EEEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTG-------------------GGGHH
T ss_pred eEEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCc-------------------hHHHH
Confidence 47888888777777777777777666443 0 247777433322 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecC
Q 024982 108 KQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~ 167 (259)
..+.. +.+.+...+.++-....... -....++.+++.++|.|+++..
T Consensus 74 ttI~~------------I~~~a~~~gyk~II~n~~~~-~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 74 SAINK------------IVKLADDKEVQAIVVSTDQA-GLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp HHHHH------------HHGGGGCTTEEEEEEECSSC-CCHHHHHHHHHHCTTSEEEESS
T ss_pred HHHHH------------HHHHhhcCCCeEEEEECCCc-chHHHHHHHHhcCCCEEEEecc
Confidence 11111 33344444544333322221 2356678899889998887764
No 151
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.90 E-value=2.6e+02 Score=22.10 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=36.7
Q ss_pred hhhCCccEEEEEEecCchH--HHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCCC
Q 024982 129 LKEAGFPYKIHIVKDHDMR--ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (259)
Q Consensus 129 ~~~~~v~v~~~v~~g~~~~--~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~~ 202 (259)
+.+.|..+......++ .. ...++.....++|-||+......... -.-+-+....+||+++-...
T Consensus 34 a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~---------~~~~~~~~~~iPvV~~~~~~ 99 (293)
T 3l6u_A 34 AKANKYEALVATSQNS-RISEREQILEFVHLKVDAIFITTLDDVYIG---------SAIEEAKKAGIPVFAIDRMI 99 (293)
T ss_dssp HHHTTCEEEEEECSSC-HHHHHHHHHHHHHTTCSEEEEECSCTTTTH---------HHHHHHHHTTCCEEEESSCC
T ss_pred HHHcCCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEecCChHHHH---------HHHHHHHHcCCCEEEecCCC
Confidence 3444776655444332 32 24566667789999998654222111 12234556789999996543
No 152
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=24.88 E-value=1.8e+02 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=23.7
Q ss_pred hhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCC
Q 024982 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 130 ~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
...|.+++..-+..+.-.+...+..++ +|.||+++.-
T Consensus 57 ~~~g~ev~~~dL~~~~Dv~~~~~~l~~--aD~iv~~~P~ 93 (218)
T 3rpe_A 57 RESGHQVKITTVDQGYDIESEIENYLW--ADTIIYQMPA 93 (218)
T ss_dssp HHTTCCEEEEEGGGCCCHHHHHHHHHH--CSEEEEEEEC
T ss_pred hhCCCEEEEEECCCccCHHHHHHHHHh--CCEEEEECCh
Confidence 334777776665543334555566655 8999999864
No 153
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=24.83 E-value=1.3e+02 Score=26.02 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=37.9
Q ss_pred hhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC---CcccccCCCcCCcHHHHH-hhcCCccEEEEeC
Q 024982 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVSDYC-VHHCVCPVVVVRY 200 (259)
Q Consensus 127 ~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~---~~~~~~~~~l~gs~~~~l-l~~s~~PVlvV~~ 200 (259)
..+.+.|++++... ++....+ .++.++|.|++|+.+- +.+-. -.|.-.-.+ .++..+|++++-+
T Consensus 202 ~eL~~~GI~vtlI~---Dsa~~~~---M~~~~Vd~VivGAd~V~aNG~v~N----KiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 202 WELMKDGIEVYVIT---DNMAGWL---MKRGLIDAVVVGADRIALNGDTAN----KIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHTTTCEEEEEC---GGGHHHH---HHTTCCSEEEECCSEEETTSCEEE----ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHhCCCCEEEEe---hhHHHHH---hhcCCCCEEEECccEEecCCCEEe----cccHHHHHHHHHHcCCCEEEecc
Confidence 33445577766543 2233333 4556799999999752 22211 246655544 4557799999954
No 154
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=24.82 E-value=35 Score=28.71 Aligned_cols=67 Identities=6% Similarity=0.083 Sum_probs=48.4
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccc-cCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR-GSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~-~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+.-+-..-+.+-....++++.|++.+.-+|+-.+.+.....+ . .+......+.+++++||.+--++
T Consensus 16 ~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~---~~~~~v~~~a~~~~VPValHlDH 83 (286)
T 1gvf_A 16 NGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALE---EIYALCSAYSTTYNMPLALHLDH 83 (286)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHH---HHHHHHHHHHHHTTSCBEEEEEE
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHH---HHHHHHHHHHHhCCCcEEEEcCC
Confidence 3667777777777789999999999999998877764321111 1 23467778888899998876543
No 155
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=24.78 E-value=63 Score=27.99 Aligned_cols=78 Identities=8% Similarity=-0.020 Sum_probs=50.3
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-ccc-CCC------cCCcHHHHHhhcCCccEE
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KRG-SDG------KLGSVSDYCVHHCVCPVV 196 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~~-~~~------l~gs~~~~ll~~s~~PVl 196 (259)
+.+..++.+..+-..-+.+-....++++.|++.+..+|+-.+.+.... .+. +.. .+......+.++.++||.
T Consensus 12 ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVa 91 (349)
T 3elf_A 12 MLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVA 91 (349)
T ss_dssp HHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEE
T ss_pred HHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 334444557777777777777999999999999999998766432111 110 000 112345667788899997
Q ss_pred EEeCCC
Q 024982 197 VVRYPD 202 (259)
Q Consensus 197 vV~~~~ 202 (259)
+--++.
T Consensus 92 LHlDHg 97 (349)
T 3elf_A 92 LHTDHC 97 (349)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 765543
No 156
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=24.75 E-value=2.8e+02 Score=25.11 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=28.7
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~ 80 (259)
+++++++.|.-.|.-++..+.+. .|.+++.+|+...
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCC
Confidence 79999999999998887776553 2577999998754
No 157
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.58 E-value=62 Score=22.77 Aligned_cols=55 Identities=5% Similarity=-0.181 Sum_probs=32.2
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.|++++.....-.... +.. .++|+|++|-.=+.... -.........+||.+++..
T Consensus 33 ~gi~v~i~a~~~~~~~----~~~--~~~DvvLLgPQV~y~~~---------~ik~~~~~~~ipV~vI~~~ 87 (108)
T 3nbm_A 33 TEVRVIANSGAYGAHY----DIM--GVYDLIILAPQVRSYYR---------EMKVDAERLGIQIVATRGM 87 (108)
T ss_dssp HTCSEEEEEEETTSCT----TTG--GGCSEEEECGGGGGGHH---------HHHHHHTTTTCEEEECCHH
T ss_pred CCCceEEEEcchHHHH----hhc--cCCCEEEEChHHHHHHH---------HHHHHhhhcCCcEEEeCHH
Confidence 3777776553322212 222 35899999986332222 2345556668999998753
No 158
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.13 E-value=1.9e+02 Score=20.30 Aligned_cols=48 Identities=4% Similarity=-0.108 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc-CCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~-s~~PVlvV~~~ 201 (259)
.+..++..++.++|+|++...-.. ..++ ....++-+. ..+|++++...
T Consensus 47 ~~~a~~~l~~~~~dlvi~D~~l~~-~~g~------~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 47 ATQALQLLASREVDLVISAAHLPQ-MDGP------TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH------HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCc-CcHH------HHHHHHHhHCCCCeEEEEECC
Confidence 344456777889999999986332 2222 234444443 34888888653
No 159
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.07 E-value=1.9e+02 Score=20.37 Aligned_cols=48 Identities=6% Similarity=-0.057 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc---CCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~---s~~PVlvV~~~ 201 (259)
.+..++.+++.++|+|++...-.+ ..++ .....+-+. ..+|++++...
T Consensus 40 ~~~al~~l~~~~~dlii~D~~l~~-~~g~------~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 40 GREAVRFLSLTRPDLIISDVLMPE-MDGY------ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHHTTCCCSEEEEESCCSS-SCHH------HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH------HHHHHHHhCCCcCCCCEEEEECC
Confidence 444557778889999999986322 2222 234444433 35888888753
No 160
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.00 E-value=1.2e+02 Score=20.73 Aligned_cols=48 Identities=13% Similarity=-0.176 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCC-ccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~-~PVlvV~~~ 201 (259)
.+..++..++.++|+|++...-.. ..++ ...+++-+..+ +|++++...
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~------~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 40 GEEGERLFGLHAPDVIITDIRMPK-LGGL------EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH------HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHhccCCCEEEEeCCCCC-CCHH------HHHHHHHhcCCCCcEEEEecC
Confidence 344456677788999999986322 2222 23444444443 777777543
No 161
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.75 E-value=1.8e+02 Score=19.90 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh---cCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~---~s~~PVlvV~~~ 201 (259)
.+..++.+++.++|+|++...-.. ..++ ...+++-+ ...+|++++...
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~------~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNLPD-QDGV------SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSS-SCHH------HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH------HHHHHHHhCcccCCCCEEEEecC
Confidence 444557778889999999886321 2222 23444443 245899988753
No 162
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.50 E-value=1.8e+02 Score=19.90 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhc---CCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~---s~~PVlvV~~~ 201 (259)
.+..++.+++.++|+|++...-. ...+. ...+++-+. ..+|++++...
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDII-GENSP------NLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC-------------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC-CCcHH------HHHHHHHcCcccCCCCEEEEecC
Confidence 34445667778999999998632 22222 345555555 45899988754
No 163
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.43 E-value=1.8e+02 Score=19.80 Aligned_cols=48 Identities=10% Similarity=-0.039 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCC----cccccCCCcCCcHHHHHhhcC-CccEEEEeC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFG----AEKRGSDGKLGSVSDYCVHHC-VCPVVVVRY 200 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~----~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~ 200 (259)
.+..++..++.++|+|++...-.. ...+. ...+++-+.. .+|++++..
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~------~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 36 PVSLSTVLREENPEVVLLDMNFTSGINNGNEGL------FWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HHHHHHHHHHSCEEEEEEETTTTC-----CCHH------HHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH------HHHHHHHhhCcCCCEEEEEC
Confidence 445557777888999999986321 11221 2344444443 488888864
No 164
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=23.26 E-value=1.6e+02 Score=24.15 Aligned_cols=25 Identities=4% Similarity=-0.122 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 52 DESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 52 ~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
+.....++.++++|+..|++..+++
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~ 128 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQP 128 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4456778999999999999877664
No 165
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=23.14 E-value=53 Score=24.09 Aligned_cols=38 Identities=8% Similarity=-0.099 Sum_probs=26.5
Q ss_pred CCCeEEEeecCChh----HHHHHHHHHHHhCCCCCEEEEEEEe
Q 024982 40 ARRKIGVAVDLSDE----SAFAVRWAVHHYLRPGDAVILVHVS 78 (259)
Q Consensus 40 ~~~rILVavD~s~~----s~~al~~A~~lA~~~~a~l~llhV~ 78 (259)
.++|+++.+..+++ +..+++.|..++.. +.++.++...
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~~ 45 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-DQDVCVLFLD 45 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-CCEEEEEECG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEEh
Confidence 45789999987665 46778888777664 5677766543
No 166
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.11 E-value=2.3e+02 Score=20.84 Aligned_cols=48 Identities=4% Similarity=-0.168 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++.+++.++|+|++...-. ...++ ...+++-+.. .+||+++...
T Consensus 40 ~~~al~~~~~~~~dlvl~D~~lp-~~~g~------~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 40 KDEALKLAGAEKFEFITVXLHLG-NDSGL------SLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHHTTSCCSEEEECSEET-TEESH------HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHhhCCCCEEEEeccCC-CccHH------HHHHHHHhcCCCCCEEEEeCC
Confidence 34445777888999999987622 22222 3444554433 4899888754
No 167
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=23.08 E-value=2.8e+02 Score=21.94 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCccEEEEEEecC-ch--HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 132 AGFPYKIHIVKDH-DM--RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 132 ~~v~v~~~v~~g~-~~--~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
.|..+......+. ++ ....++.....++|-||+......... ..... +. ..+||+++-
T Consensus 34 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~--------~~~~~-~~-~~iPvV~~~ 94 (304)
T 3o1i_D 34 QGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE--------HNLKS-WV-GNTPVFATV 94 (304)
T ss_dssp HTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST--------TTHHH-HT-TTSCEEECS
T ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH--------HHHHH-Hc-CCCCEEEec
Confidence 3666555444430 32 334566667788999998765333222 22333 44 789999983
No 168
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.07 E-value=3.5e+02 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCcEEEEecCCCCccc
Q 024982 149 RLCLEIERLSLSAVIMGSRGFGAEK 173 (259)
Q Consensus 149 ~Il~~a~~~~~dLIVlG~~~~~~~~ 173 (259)
..++.++..++|+|++.+.|+....
T Consensus 173 ~al~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHHHHhCCCCEEEEECCCcccch
Confidence 3456677778999999998876543
No 169
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.07 E-value=2.6e+02 Score=21.53 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=27.7
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcEEEEec
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~ 166 (259)
+++++.......+-.+..++.+++.++++||=|.
T Consensus 117 ~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~ 150 (196)
T 2q5c_A 117 GVKIKEFLFSSEDEITTLISKVKTENIKIVVSGK 150 (196)
T ss_dssp TCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCH
Confidence 6788888777766778888999999999987665
No 170
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.99 E-value=2e+02 Score=20.17 Aligned_cols=48 Identities=13% Similarity=-0.062 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
.+..++..+...+|+|+++..-.+ ..+. .....+-+.. .+|++++...
T Consensus 36 ~~~a~~~l~~~~~dliild~~l~~-~~g~------~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 36 ATEALAGLSADFAGIVISDIRMPG-MDGL------ALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp HHHHHHTCCTTCCSEEEEESCCSS-SCHH------HHHHHHHHHCTTSCEEEEECG
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH------HHHHHHHhhCCCCCEEEEECC
Confidence 444556677788999999986322 1221 2344444443 4888888643
No 171
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.88 E-value=1.9e+02 Score=19.94 Aligned_cols=48 Identities=6% Similarity=-0.106 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhh---cCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~---~s~~PVlvV~~~ 201 (259)
.+..++..++..+|+|++...-.+ ..++ ...+++-+ ...+||+++...
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~-~~g~------~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPK-ISGM------DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSS-SCHH------HHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCC-CCHH------HHHHHHHcCcccCCCCEEEEeCC
Confidence 344556677778999999986322 2222 34455544 245888888654
No 172
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=22.82 E-value=2.8e+02 Score=21.76 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=22.9
Q ss_pred CeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 42 ~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
+||.|-+.++-....+|-.+.+- ...+.++.++-..+
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~~~I~~Vvs~~ 37 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSSAQIDIVISNK 37 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCSCEEEEEEESS
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCCcEEEEEEeCC
Confidence 47888888887777776554431 22456776665443
No 173
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.72 E-value=2.9e+02 Score=21.97 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=40.1
Q ss_pred hhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 128 ~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+.+.|..+......+......+++.....++|-||+.....+ ...-..++...+||+++-..
T Consensus 35 ~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-----------~~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 35 ELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPE-----------DFRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSS-----------CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCC-----------hHHHHHHHhCCCCEEEECCC
Confidence 3344477666555443334567888888889999998654221 12234566778999998654
No 174
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=22.61 E-value=2.8e+02 Score=21.72 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCcEEEEecC
Q 024982 148 ERLCLEIERLSLSAVIMGSR 167 (259)
Q Consensus 148 ~~Il~~a~~~~~dLIVlG~~ 167 (259)
+++++..++.++|++|+..-
T Consensus 72 ~~~~~~l~~~~~Dliv~a~y 91 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAGY 91 (212)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEchh
Confidence 47888889999999999664
No 175
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.48 E-value=1.5e+02 Score=20.53 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeC
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~ 200 (259)
.|++++.....-.+..+ . ..++|+|+.+..-.....+ -.......++||.++..
T Consensus 31 ~gi~~~i~~~~~~~~~~----~--~~~~D~Ii~t~~l~~~~~~---------~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 31 KNINATIEAIAETRLSE----V--VDRFDVVLLAPQSRFNKKR---------LEEITKPKGIPIEIINT 84 (109)
T ss_dssp HTCSEEEEEECSTTHHH----H--TTTCSEEEECSCCSSHHHH---------HHHHHHHHTCCEEECCH
T ss_pred CCCCeEEEEecHHHHHh----h--cCCCCEEEECCccHHHHHH---------HHHHhcccCCCEEEECh
Confidence 37776655544443222 2 2569999998853322211 12223334678877764
No 176
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=21.75 E-value=3.5e+02 Score=22.49 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=49.8
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
.+||.|-+.++-.+..+|-++.+- ...++++.++-...+. . . .+
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~---------------------~---~-~~---------- 138 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGIVSNHPD---------------------F---A-PL---------- 138 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSST---------------------T---H-HH----------
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEEEeCcHH---------------------H---H-HH----------
Confidence 478999999887777777666543 3356777665433221 0 0 01
Q ss_pred HHHHHhhhhhhCCccEEEEEEecCc---hHHHHHHHHHhcCCcEEEEecCC
Q 024982 121 KAADLARPLKEAGFPYKIHIVKDHD---MRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g~~---~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
....|+++...-....+ ..+++++..++.++|+||+..-+
T Consensus 139 --------A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 139 --------AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp --------HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred --------HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 12237765442111111 23578899999999999997643
No 177
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=21.67 E-value=47 Score=27.93 Aligned_cols=68 Identities=7% Similarity=0.042 Sum_probs=47.2
Q ss_pred CCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcc-cccCCCcCCcHHHHHhh--cCCccEEEEeCC
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAE-KRGSDGKLGSVSDYCVH--HCVCPVVVVRYP 201 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~-~~~~~~l~gs~~~~ll~--~s~~PVlvV~~~ 201 (259)
.+.-+-..-+.+-....++++.|++.+.-+|+-.+.+.... .+. ..+......+.+ ++++||.+--++
T Consensus 19 ~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~--~~~~~~v~~~A~~~~~~VPValHlDH 89 (288)
T 3q94_A 19 GKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGF--KTVVAMVKALIEEMNITVPVAIHLDH 89 (288)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCH--HHHHHHHHHHHHHTTCCSCEEEEEEE
T ss_pred CCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCH--HHHHHHHHHHHHhcCCCCcEEEECCC
Confidence 36677777777777899999999999999998766543211 111 023455667778 889999886543
No 178
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=21.65 E-value=1e+02 Score=27.23 Aligned_cols=26 Identities=8% Similarity=-0.086 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 52 DESAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 52 ~~s~~al~~A~~lA~~~~a~l~llhV 77 (259)
..+.+.+++|.++|++.+.+|+++|=
T Consensus 185 ~~~eRiar~AF~~A~~~~~~vt~v~K 210 (402)
T 4aoy_A 185 KSIRSFARACFNYALDMNQDLWFSTK 210 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 56788899999999877778888874
No 179
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.64 E-value=2.1e+02 Score=19.82 Aligned_cols=48 Identities=8% Similarity=-0.053 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~ 201 (259)
....++.+++.++|+|++...-.+ ..+. ....++-+.. .+|++++...
T Consensus 38 ~~~al~~~~~~~~dlvllD~~lp~-~~g~------~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 38 GINAIQIALKHPPNVLLTDVRMPR-MDGI------ELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHHHHHHHTTSCCSEEEEESCCSS-SCHH------HHHHHHHHHCTTCEEEEECCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CCHH------HHHHHHHhhCCCCcEEEEeCC
Confidence 444557777788999999986322 2222 2344554443 4888888654
No 180
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.57 E-value=1.5e+02 Score=22.31 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=19.9
Q ss_pred CCccEEEEEEecCchHHHHHHHHHh----cCCcEEEE
Q 024982 132 AGFPYKIHIVKDHDMRERLCLEIER----LSLSAVIM 164 (259)
Q Consensus 132 ~~v~v~~~v~~g~~~~~~Il~~a~~----~~~dLIVl 164 (259)
.|..+.......++ .+.|.+..++ .++|+||.
T Consensus 43 ~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVit 78 (169)
T 1y5e_A 43 AGHKVTSYEIVKDD-KESIQQAVLAGYHKEDVDVVLT 78 (169)
T ss_dssp HTCEEEEEEEECSS-HHHHHHHHHHHHTCTTCSEEEE
T ss_pred CCCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEE
Confidence 38887777777665 3334333322 37999987
No 181
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.49 E-value=1.7e+02 Score=20.47 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=22.5
Q ss_pred HhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCC
Q 024982 125 LARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF 169 (259)
Q Consensus 125 ~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~ 169 (259)
+++.+.+.|++++..-+...++. .-.++|.||+|+.-.
T Consensus 19 ia~~l~~~g~~v~~~~~~~~~~~-------~l~~~d~iiig~pty 56 (138)
T 5nul_A 19 IAKGIIESGKDVNTINVSDVNID-------ELLNEDILILGCSAM 56 (138)
T ss_dssp HHHHHHHTTCCCEEEEGGGCCHH-------HHTTCSEEEEEECCB
T ss_pred HHHHHHHCCCeEEEEEhhhCCHH-------HHhhCCEEEEEcCcc
Confidence 34444455777766555443321 225689999999743
No 182
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=21.36 E-value=1.6e+02 Score=21.94 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=22.4
Q ss_pred hhhhhhCCccEEEEEEecCchHHHHHHHHHh----cCCcEEEE
Q 024982 126 ARPLKEAGFPYKIHIVKDHDMRERLCLEIER----LSLSAVIM 164 (259)
Q Consensus 126 ~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~----~~~dLIVl 164 (259)
++.+.+.|..+.......++ .+.|.+..++ .++|+||.
T Consensus 27 ~~~l~~~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVit 68 (164)
T 2is8_A 27 REVLAGGPFEVAAYELVPDE-PPMIKKVLRLWADREGLDLILT 68 (164)
T ss_dssp HHHHTTSSEEEEEEEEECSC-HHHHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHCCCeEeEEEEcCCC-HHHHHHHHHHHHhcCCCCEEEE
Confidence 34445558887776666665 3333333322 26999887
No 183
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=21.16 E-value=3.5e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=23.4
Q ss_pred CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 024982 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (259)
Q Consensus 40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llh 76 (259)
..+||.|-+.++-....++-++.+- ...++++.++-
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Vi 123 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLHMIPTAIV 123 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSCEEEEEEE
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCCeEEEEEE
Confidence 3478999999887777777666542 23455655543
No 184
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=21.10 E-value=1.9e+02 Score=25.27 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=21.6
Q ss_pred CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 024982 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (259)
Q Consensus 39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~ 79 (259)
++++||||. +.++.+...+ +-|++.|-++++++...
T Consensus 4 m~~~kiLI~-g~g~~a~~i~----~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 4 MEIKSILIA-NRGEIALRAL----RTIKEMGKKAICVYSEA 39 (446)
T ss_dssp TCCCEEEEC-CCHHHHHHHH----HHHHHTTCEEEEEEEGG
T ss_pred cccceEEEE-CCCHHHHHHH----HHHHHcCCEEEEEEcCc
Confidence 357999994 4444333333 33345788888876544
No 185
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.97 E-value=2e+02 Score=19.32 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=29.4
Q ss_pred HHHHHHHHHhc-CCcEEEEecCCCCcccccCCCcCCcHHHHHhhcC-CccEEEEeCCC
Q 024982 147 RERLCLEIERL-SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYPD 202 (259)
Q Consensus 147 ~~~Il~~a~~~-~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s-~~PVlvV~~~~ 202 (259)
.+..++..++. ++|+|++...-.....++ ....++-+.. .+|++++....
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~------~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 38 GAKAIEMLKSGAAIDGVVTDIRFCQPPDGW------QVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHHHHHHTTCCCCEEEEESCCSSSSCHH------HHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHHHHHHcCCCCCEEEEeeeCCCCCCHH------HHHHHHHhcCCCCCEEEEeCCc
Confidence 34455666776 899999998632212222 2344444443 48998886543
No 186
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=20.62 E-value=3.6e+02 Score=22.27 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHHH
Q 024982 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (259)
Q Consensus 41 ~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (259)
.+||.|-+.++-.+..+|-++.+- ...++++.++-...+.. . .
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~------------------------~-~----------- 132 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVSNHPDL------------------------E-P----------- 132 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEESSSTT------------------------H-H-----------
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEeCcHHH------------------------H-H-----------
Confidence 478999999887777776666442 33467776654432210 0 0
Q ss_pred HHHHHhhhhhhCCccEEEEEEecCc---hHHHHHHHHHhcCCcEEEEecCC
Q 024982 121 KAADLARPLKEAGFPYKIHIVKDHD---MRERLCLEIERLSLSAVIMGSRG 168 (259)
Q Consensus 121 ~~~~~~~~~~~~~v~v~~~v~~g~~---~~~~Il~~a~~~~~dLIVlG~~~ 168 (259)
+ ....|+++...-....+ ..+++++..++.++|+||+..-+
T Consensus 133 ----~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 133 ----L---AHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ----H---HHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----H---HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 1 11237765432111111 23468899999999999997643
No 187
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.48 E-value=3.3e+02 Score=21.67 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=26.5
Q ss_pred CccEEEEEEecCchHHHHHHHHHhcCCcEEEEec
Q 024982 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (259)
Q Consensus 133 ~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~ 166 (259)
+++++.......+-.+..++.+++.++++||=|.
T Consensus 129 ~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~ 162 (225)
T 2pju_A 129 NLRLDQRSYITEEDARGQINELKANGTEAVVGAG 162 (225)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCH
Confidence 6777777777766678888888888899877665
No 188
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Probab=20.30 E-value=2.8e+02 Score=23.14 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=25.8
Q ss_pred CeEEEeecCChh------------HHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 42 RKIGVAVDLSDE------------SAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 42 ~rILVavD~s~~------------s~~al~~A~~lA~~~~a~l~llhV 77 (259)
..+.|.+|+++. .....++...++...+..+..+-+
T Consensus 18 s~LcvglDp~~~~lp~~~~~~~~~~~~l~~f~~~ivd~l~~~v~~~Kv 65 (290)
T 3r89_A 18 GFVCIGLDSSIDYIPENMKAGKSVSEALFSYNKEIIDQTYDVCAIYKL 65 (290)
T ss_dssp CSEEEECCCCGGGSCHHHHTTCCHHHHHHHHHHHHHHHHTTSCSEEEE
T ss_pred CCEEEEECCChhhCchhhccccchHHHHHHHHHHHHHHhCCcceEEEe
Confidence 458888898872 446668888888887776665554
No 189
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=20.16 E-value=2.2e+02 Score=19.53 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEeCC
Q 024982 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (259)
Q Consensus 147 ~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~~~ 201 (259)
.+..++.++..++|+|++...-.+ ..++ ...+++-+...+|++++...
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l~~-~~g~------~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 37 CEEAIGKIFSNKYDLIFLEIILSD-GDGW------TLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHHHHCCCSEEEEESEETT-EEHH------HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCHH------HHHHHHccCCCCCEEEEEcC
Confidence 344456777788999999876321 2222 23444444446888888643
No 190
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=20.11 E-value=1.3e+02 Score=25.08 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=26.1
Q ss_pred CeEEEeecCChh----------HHHHHHHHHHHhCCCCCEEEEEEE
Q 024982 42 RKIGVAVDLSDE----------SAFAVRWAVHHYLRPGDAVILVHV 77 (259)
Q Consensus 42 ~rILVavD~s~~----------s~~al~~A~~lA~~~~a~l~llhV 77 (259)
..+.|.+|+++. .....+++..++...+..+..+-+
T Consensus 23 ~~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd~l~~~v~~~Kv 68 (284)
T 3l52_A 23 GPLCVGIDPHASLLADWGLSDDVAGLERFSRTVVEALGEHVAVFKP 68 (284)
T ss_dssp CSCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred CCeEEEECCChhhccccccccchHHHHHHHHHHHHHhCCcceEEEe
Confidence 468899998876 345568888888887776655544
No 191
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.08 E-value=4.5e+02 Score=23.13 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=29.7
Q ss_pred EEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982 138 IHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (259)
Q Consensus 138 ~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~ 199 (259)
..+..+.| ...+.+.+++.++|+++-+++ ..++.++..+|.+-+.
T Consensus 366 ~~v~~~~d-~~~l~~~i~~~~pDl~ig~~~----------------~~~~a~k~gip~~~~~ 410 (458)
T 1mio_B 366 SKVKVEGD-FFDVHQWIKNEGVDLLISNTY----------------GKFIAREENIPFVRFG 410 (458)
T ss_dssp CEEEESCB-HHHHHHHHHHSCCSEEEESGG----------------GHHHHHHHTCCEEECS
T ss_pred CEEEECCC-HHHHHHHHHhcCCCEEEeCcc----------------hHHHHHHcCCCEEEee
Confidence 35566655 555888899999999995553 2344555667777654
Done!