BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024983
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI
GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS
CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSE
MWQSTQRPTADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPG
PRLLILDHIQRDPELKKSR

High Scoring Gene Products

Symbol, full name Information P value
AT5G24650 protein from Arabidopsis thaliana 4.4e-45
AT3G49560 protein from Arabidopsis thaliana 9.9e-39

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024983
        (259 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2153959 - symbol:AT5G24650 species:3702 "Arabi...   474  4.4e-45   1
TAIR|locus:2114723 - symbol:AT3G49560 "AT3G49560" species...   414  9.9e-39   1


>TAIR|locus:2153959 [details] [associations]
            symbol:AT5G24650 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0005744
            "mitochondrial inner membrane presequence translocase complex"
            evidence=ISS] [GO:0015031 "protein transport" evidence=ISS]
            [GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane
            transporter activity" evidence=ISS] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0005774 "vacuolar
            membrane" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009536 "plastid" evidence=IDA] InterPro:IPR003397 Pfam:PF02466
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005774 EMBL:CP002688
            GO:GO:0009941 InterPro:IPR013761 InterPro:IPR021129 Pfam:PF00536
            SUPFAM:SSF47769 EMBL:AB010068 EMBL:AY070735 EMBL:AY142048
            EMBL:DQ405267 IPI:IPI00520297 RefSeq:NP_197853.1 UniGene:At.22380
            ProteinModelPortal:Q9FLT9 SMR:Q9FLT9 STRING:Q9FLT9 PRIDE:Q9FLT9
            EnsemblPlants:AT5G24650.1 GeneID:832536 KEGG:ath:AT5G24650
            TAIR:At5g24650 HOGENOM:HOG000264396 InParanoid:Q9FLT9 OMA:PTHVEAA
            PhylomeDB:Q9FLT9 ProtClustDB:CLSN2684246 Genevestigator:Q9FLT9
            Uniprot:Q9FLT9
        Length = 259

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 108/252 (42%), Positives = 130/252 (51%)

Query:     8 VMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVM 67
             VMSL++  Q  I+  Q K KE+E G+KSWL+KQ LPVE                  +G +
Sbjct:    16 VMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMGTL 75

Query:    68 XXXXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLR 127
                              +P             GGPLVQARNFA ITGVNAGI+CVMKR+R
Sbjct:    76 SPEMPQAGI--------DPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACVMKRIR 127

Query:   128 GKEDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQSTQR 187
             GKEDL+                   G     +NA T+   FA+FQG  FK+ E +    +
Sbjct:   128 GKEDLESAVVAAFGSGVAYSLVSA-GLQGQPMNAITTAAGFAVFQGVFFKLGERFS---K 183

Query:   188 PTADDVYYARTRGMLDKLGLQNYTKNFKRGXXXXXXXXXXXXXXXRDVRIPPGPRLLILD 247
             P+ +D YY R R ML KLGL+ Y KNFK+G               RDV IPPGPRLLILD
Sbjct:   184 PSVEDPYYTRGRSMLLKLGLEKYEKNFKKGLLADPTLPLLTDSALRDVSIPPGPRLLILD 243

Query:   248 HIQRDPELKKSR 259
             HIQRDPELK  R
Sbjct:   244 HIQRDPELKGKR 255


>TAIR|locus:2114723 [details] [associations]
            symbol:AT3G49560 "AT3G49560" species:3702 "Arabidopsis
            thaliana" [GO:0005744 "mitochondrial inner membrane presequence
            translocase complex" evidence=ISS] [GO:0015031 "protein transport"
            evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven protein
            transmembrane transporter activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009658 "chloroplast organization" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR003397 Pfam:PF02466
            GO:GO:0016021 GO:GO:0005739 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0016020 GO:GO:0009941 Gene3D:1.10.150.50 InterPro:IPR013761
            InterPro:IPR021129 Pfam:PF00536 SUPFAM:SSF47769 EMBL:AL132964
            HOGENOM:HOG000264396 ProtClustDB:CLSN2684246 EMBL:AF360191
            EMBL:AY085551 EMBL:BT001951 EMBL:DQ405266 IPI:IPI00531723
            PIR:T46233 RefSeq:NP_190525.1 UniGene:At.24210
            ProteinModelPortal:Q9SCK3 SMR:Q9SCK3 PaxDb:Q9SCK3 PRIDE:Q9SCK3
            DNASU:824118 EnsemblPlants:AT3G49560.1 GeneID:824118
            KEGG:ath:AT3G49560 TAIR:At3g49560 eggNOG:NOG260309
            InParanoid:Q9SCK3 OMA:GEMMAMA PhylomeDB:Q9SCK3 ArrayExpress:Q9SCK3
            Genevestigator:Q9SCK3 Uniprot:Q9SCK3
        Length = 261

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 94/250 (37%), Positives = 122/250 (48%)

Query:    10 SLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVMXX 69
             SL    Q  I+  Q K KE+E  +K+WL+KQ +PVE                  +G +  
Sbjct:    23 SLFNDQQNPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSP 82

Query:    70 XXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLRGK 129
                            +P             GGP VQARNFA ITGVNAGI+ VMKR+RGK
Sbjct:    83 EMPQAGV--------DPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGK 134

Query:   130 EDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQSTQRPT 189
             ED++                   G     +NA T+   FA+FQG  FK+ E +    +P+
Sbjct:   135 EDIESAVVAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFKLGERFS---KPS 190

Query:   190 ADDVYYARTRGMLDKLGLQNYTKNFKRGXXXXXXXXXXXXXXXRDVRIPPGPRLLILDHI 249
              +D ++ R R ML KLGL+ Y KNFK+G               +D  IPPGPRL+ILDHI
Sbjct:   191 TEDPFFTRGRTMLVKLGLEKYEKNFKKGLLTDPTLPLLTDSALKDANIPPGPRLMILDHI 250

Query:   250 QRDPELKKSR 259
             QRDPE+K  R
Sbjct:   251 QRDPEIKGKR 260


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       180   0.00092  109 3  11 22  0.42    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.16u 0.11s 13.27t   Elapsed:  00:00:01
  Total cpu time:  13.16u 0.11s 13.27t   Elapsed:  00:00:01
  Start:  Sat May 11 10:24:12 2013   End:  Sat May 11 10:24:13 2013

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