Query 024983
Match_columns 259
No_of_seqs 160 out of 599
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 99.9 4.5E-28 9.7E-33 206.5 4.2 125 44-180 39-165 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 2.9E-22 6.3E-27 173.3 11.5 119 49-185 16-134 (170)
3 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.5E-21 3.2E-26 158.0 11.7 120 49-182 9-128 (128)
4 TIGR00983 3a0801s02tim23 mitoc 99.9 1.2E-21 2.7E-26 166.2 11.6 120 41-174 28-148 (149)
5 PTZ00236 mitochondrial import 99.9 1.1E-20 2.3E-25 162.8 14.5 116 49-182 18-133 (164)
6 KOG1652 Mitochondrial import i 99.8 2.4E-20 5.3E-25 161.9 -0.1 119 42-182 12-131 (183)
7 COG5596 TIM22 Mitochondrial im 99.6 5E-17 1.1E-21 142.0 -0.9 158 14-181 14-189 (191)
8 KOG3324 Mitochondrial import i 99.5 2.5E-14 5.5E-19 126.1 7.7 123 43-179 73-196 (206)
9 PF00536 SAM_1: SAM domain (St 99.0 1.9E-10 4E-15 82.8 3.6 57 195-251 5-62 (64)
10 cd00166 SAM Sterile alpha moti 98.7 6.9E-09 1.5E-13 72.9 3.0 55 197-251 6-61 (63)
11 PF07647 SAM_2: SAM domain (St 98.7 1.1E-08 2.4E-13 73.8 2.1 55 197-251 8-64 (66)
12 smart00454 SAM Sterile alpha m 98.6 2.6E-08 5.6E-13 70.5 2.7 55 197-251 8-64 (68)
13 KOG4374 RNA-binding protein Bi 98.5 3.4E-08 7.4E-13 88.6 0.6 60 195-254 151-211 (216)
14 COG5596 TIM22 Mitochondrial im 97.4 1.8E-05 3.9E-10 69.9 -1.9 79 101-181 77-165 (191)
15 KOG4608 Uncharacterized conser 97.1 0.00016 3.4E-09 66.5 0.4 81 98-180 127-207 (270)
16 KOG3678 SARM protein (with ste 96.7 0.005 1.1E-07 62.0 7.3 129 109-251 395-525 (832)
17 TIGR00980 3a0801so1tim17 mitoc 92.2 1.9 4.1E-05 37.9 10.2 123 42-183 12-136 (170)
18 PF09597 IGR: IGR protein moti 90.5 0.15 3.2E-06 37.4 1.5 49 200-251 3-53 (57)
19 PF02466 Tim17: Tim17/Tim22/Ti 90.0 2.7 5.9E-05 33.7 8.7 27 46-72 1-28 (128)
20 KOG4384 Uncharacterized SAM do 88.4 0.21 4.6E-06 48.3 1.2 55 197-251 217-273 (361)
21 PF10247 Romo1: Reactive mitoc 82.0 1.3 2.8E-05 33.5 2.6 64 46-121 2-67 (67)
22 KOG1398 Uncharacterized conser 80.2 2.4 5.3E-05 42.0 4.4 47 101-147 298-344 (460)
23 KOG4096 Uncharacterized conser 76.5 2.2 4.8E-05 32.9 2.3 67 45-122 5-72 (75)
24 PF05957 DUF883: Bacterial pro 70.8 15 0.00032 28.4 5.9 15 50-64 77-91 (94)
25 KOG0196 Tyrosine kinase, EPH ( 69.5 2.4 5.1E-05 45.6 1.4 59 193-251 921-981 (996)
26 TIGR03750 conj_TIGR03750 conju 67.4 23 0.00049 29.2 6.5 64 137-207 32-95 (111)
27 KOG4375 Scaffold protein Shank 66.1 3.5 7.5E-05 38.8 1.6 40 198-237 215-254 (272)
28 PF05957 DUF883: Bacterial pro 65.8 18 0.00038 28.0 5.3 52 18-69 39-92 (94)
29 PF03020 LEM: LEM domain; Int 61.6 3.5 7.6E-05 28.6 0.6 12 230-241 13-24 (43)
30 PF11990 DUF3487: Protein of u 60.3 37 0.00081 28.2 6.6 64 136-206 34-97 (121)
31 PF13436 Gly-zipper_OmpA: Glyc 55.1 34 0.00074 28.0 5.5 48 130-181 50-97 (118)
32 PF13735 tRNA_NucTran2_2: tRNA 53.1 14 0.0003 30.2 2.9 25 227-251 105-131 (149)
33 PRK10404 hypothetical protein; 50.5 23 0.0005 28.5 3.7 13 55-67 85-97 (101)
34 PF12597 DUF3767: Protein of u 49.9 76 0.0017 26.2 6.8 57 125-181 33-89 (118)
35 KOG1170 Diacylglycerol kinase 49.4 15 0.00032 39.9 3.0 58 194-251 999-1057(1099)
36 KOG3930 Uncharacterized conser 49.2 7.5 0.00016 37.7 0.8 52 200-251 6-63 (389)
37 TIGR01149 mtrG N5-methyltetrah 48.9 59 0.0013 24.9 5.4 52 14-67 9-62 (70)
38 KOG3791 Predicted RNA-binding 47.4 7.2 0.00016 40.2 0.4 39 200-240 480-518 (569)
39 PTZ00236 mitochondrial import 47.1 98 0.0021 27.2 7.4 122 42-182 14-137 (164)
40 PRK01026 tetrahydromethanopter 46.3 64 0.0014 25.1 5.4 53 14-68 12-66 (77)
41 PRK10132 hypothetical protein; 42.0 53 0.0011 26.8 4.6 15 53-67 89-103 (108)
42 PF10439 Bacteriocin_IIc: Bact 41.1 68 0.0015 23.5 4.7 23 130-152 23-45 (65)
43 smart00540 LEM in nuclear memb 39.6 15 0.00032 25.6 0.9 12 230-241 13-24 (44)
44 KOG0249 LAR-interacting protei 38.4 6.3 0.00014 41.9 -1.5 37 198-234 678-714 (916)
45 COG4803 Predicted membrane pro 38.2 28 0.00061 30.6 2.6 55 14-68 12-76 (170)
46 PF01988 VIT1: VIT family; In 36.7 1.3E+02 0.0027 26.6 6.6 26 230-255 87-112 (213)
47 PF06568 DUF1127: Domain of un 36.2 15 0.00032 24.5 0.5 18 222-239 18-35 (40)
48 COG3808 OVP1 Inorganic pyropho 34.7 91 0.002 32.6 5.9 74 131-238 517-593 (703)
49 PLN02975 complex I subunit 34.1 91 0.002 25.3 4.7 28 161-188 58-88 (97)
50 KOG4374 RNA-binding protein Bi 33.9 12 0.00026 34.3 -0.4 51 200-250 122-174 (216)
51 PRK10132 hypothetical protein; 32.5 1.7E+02 0.0037 23.8 6.2 17 49-65 89-105 (108)
52 PRK13731 conjugal transfer sur 31.4 25 0.00054 32.8 1.3 22 128-149 108-129 (243)
53 PF03672 UPF0154: Uncharacteri 31.4 40 0.00088 25.3 2.2 18 51-68 4-21 (64)
54 PF05818 TraT: Enterobacterial 31.4 41 0.00088 30.8 2.6 14 165-178 115-128 (215)
55 TIGR03595 Obg_CgtA_exten Obg f 31.4 39 0.00083 25.2 2.1 37 190-247 28-64 (69)
56 PRK02898 cobalt transport prot 31.4 18 0.00039 29.4 0.3 49 22-70 40-92 (100)
57 PF07281 INSIG: Insulin-induce 30.6 3.9E+02 0.0085 23.8 9.1 65 103-172 48-117 (193)
58 PF04210 MtrG: Tetrahydrometha 30.5 1.6E+02 0.0034 22.7 5.2 50 14-65 9-60 (70)
59 TIGR01992 PTS-IIBC-Tre PTS sys 29.1 1.6E+02 0.0035 29.4 6.6 65 104-175 345-416 (462)
60 PRK10404 hypothetical protein; 28.9 2.1E+02 0.0045 23.0 6.1 17 49-65 83-99 (101)
61 PF09269 DUF1967: Domain of un 28.9 57 0.0012 24.2 2.6 34 193-247 31-64 (69)
62 TIGR00983 3a0801s02tim23 mitoc 28.8 2.2E+02 0.0048 24.4 6.5 35 34-70 28-62 (149)
63 KOG1899 LAR transmembrane tyro 28.2 48 0.001 35.2 2.8 44 194-237 624-667 (861)
64 COG1647 Esterase/lipase [Gener 27.5 23 0.00051 32.9 0.4 128 119-253 69-211 (243)
65 PRK00523 hypothetical protein; 26.6 70 0.0015 24.6 2.8 15 85-102 41-56 (72)
66 PF04418 DUF543: Domain of unk 26.3 1.5E+02 0.0032 22.8 4.5 20 49-68 28-47 (75)
67 PRK01844 hypothetical protein; 25.2 61 0.0013 25.0 2.2 15 85-102 40-55 (72)
68 KOG3225 Mitochondrial import i 24.5 66 0.0014 28.4 2.6 28 41-68 41-68 (168)
69 PF12732 YtxH: YtxH-like prote 23.8 83 0.0018 23.2 2.7 20 51-70 2-21 (74)
70 PRK09796 PTS system cellobiose 23.1 2E+02 0.0044 29.1 6.1 68 103-175 333-406 (472)
71 COG2944 Predicted transcriptio 22.9 52 0.0011 26.9 1.5 22 235-256 81-102 (104)
72 COG5625 Predicted transcriptio 22.6 88 0.0019 25.9 2.8 33 2-34 72-108 (113)
73 COG4575 ElaB Uncharacterized c 22.1 4.5E+02 0.0097 21.6 7.1 25 10-34 30-54 (104)
74 COG4575 ElaB Uncharacterized c 21.5 2.8E+02 0.006 22.8 5.5 15 54-68 87-101 (104)
75 PF00465 Fe-ADH: Iron-containi 21.3 4.6E+02 0.0099 24.7 7.8 48 192-242 312-359 (366)
76 KOG4403 Cell surface glycoprot 21.3 84 0.0018 32.0 2.9 34 195-228 137-171 (575)
77 PRK02126 ribonuclease Z; Provi 21.0 68 0.0015 30.6 2.2 24 225-248 177-200 (334)
78 COG4064 MtrG Tetrahydromethano 20.1 3E+02 0.0065 21.3 5.0 54 14-70 12-68 (75)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-28 Score=206.48 Aligned_cols=125 Identities=19% Similarity=0.296 Sum_probs=109.3
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCC-CCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHH
Q 024983 44 VEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPP-QSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (259)
Q Consensus 44 ~E~cv-~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~-~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec 121 (259)
+++|. |+++++|+|+++|+.+|+|.++++.+..+|.. ..++++|+ +|+ |+.+++++++|||++|++|+++||
T Consensus 39 ~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~---~kd---Mg~r~~s~~knF~~iGlvfsg~Ec 112 (168)
T KOG3225|consen 39 ENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQV---AKD---MGQRSGSYAKNFAIIGLVFSGVEC 112 (168)
T ss_pred hcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHH---HHH---HHhhhcchhhhhhhhhhhehhHHH
Confidence 34777 99999999999999999999999864222211 23455566 666 889999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 024983 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSE 180 (259)
Q Consensus 122 ~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~ 180 (259)
++|++|.|+||+|++++||+||+.++.++|+ ++++.+|++|++||++|+++-+
T Consensus 113 ~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp------~a~~~G~agfa~fS~~id~y~~ 165 (168)
T KOG3225|consen 113 LIESFRAKSDWYNGAIAGCVTGGSLGYRAGP------KAAAIGCAGFAAFSAAIDKYMR 165 (168)
T ss_pred HHHHHHhhhchhcceeeeeeeccchhhcccc------hhhhhchhHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998 9999999999999999998654
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.88 E-value=2.9e-22 Score=173.34 Aligned_cols=119 Identities=22% Similarity=0.211 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 024983 49 VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRG 128 (259)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec~ie~~Rg 128 (259)
....++.+|.+.|.+++++.+-...+ . .+++...++. +..+.++++++||+||++|+++||+++++|+
T Consensus 16 ~~G~af~~G~~~G~~~g~~~G~rnsp----~-----g~rl~g~l~a---v~~rap~~g~~Fav~g~lys~~ec~i~~~R~ 83 (170)
T TIGR00980 16 DFGGAFAMGTIGGSIFQAFKGFRNSP----K-----GEKLVGAMRA---IKTRAPVLGGNFAVWGGLFSTIDCAVVAIRK 83 (170)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCC----c-----cchhhHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666666443321 1 2345556554 5567788999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024983 129 KEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQST 185 (259)
Q Consensus 129 K~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f~~~ 185 (259)
|||+||+++|||+||++|++++|+ ++++.+|+++++|.++|+.+|-.++-+
T Consensus 84 KeD~~NsiiAG~~TGa~l~~r~G~------~a~~~~aa~gg~~la~ie~~g~~~~~~ 134 (170)
T TIGR00980 84 KEDPWNSIISGFLTGAALAVRGGP------RAMRGSAILGACILAVIEGVGLVLTRW 134 (170)
T ss_pred ccchHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997 999999999999999999998776443
No 3
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.87 E-value=1.5e-21 Score=158.05 Aligned_cols=120 Identities=28% Similarity=0.411 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 024983 49 VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRG 128 (259)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec~ie~~Rg 128 (259)
.+..+++.|+++|++.+.+..... ++...+.++++...++. +.....+++.+||.++++|+++||.++++|+
T Consensus 9 ~~~~g~~~G~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 9 STGKGFVAGAVFGGFIGAISAFTR-----PPRGSPLRPRLRSILNA---VGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-----cccCCcHhHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777777777777777754111 11112345677788876 5677778999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 024983 129 KEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMW 182 (259)
Q Consensus 129 K~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f 182 (259)
|||+||+++||++||++++++.++ +.++.+++++++++.+++++++++
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~------~~~~~~~~~~a~~~~~~~~~~~~~ 128 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGP------RGMASGAALGAAFAAAVEYYGRMP 128 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999986 999999999999999999998864
No 4
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.86 E-value=1.2e-21 Score=166.19 Aligned_cols=120 Identities=23% Similarity=0.192 Sum_probs=102.1
Q ss_pred CchhhH-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHH
Q 024983 41 PLPVEA-AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (259)
Q Consensus 41 ~~~~E~-cv~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ 119 (259)
.-..|+ |.++..++++|.++|.++|++.+....+. . .+.+.++...+++ ++.+..+++++||+|+++|+++
T Consensus 28 R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~-~----~~~k~rln~~ln~---~~~~g~~~G~~~g~~g~lys~~ 99 (149)
T TIGR00983 28 RGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQS-M----PWTKLRLNQILNM---VTRRGPFWGNTLGILALVYNGI 99 (149)
T ss_pred CChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCC-C----CcHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHH
Confidence 344554 45999999999999999999998875421 1 2345678888876 6788889999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHH
Q 024983 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC 174 (259)
Q Consensus 120 ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga 174 (259)
||.++++|+|||+||+++|||+||+++++++|+ ++++.+|++.+++.++
T Consensus 100 e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~------r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 100 NSIIEATRGKHDDFNSVAAGALTGALYKSTRGL------RGMARSGALGATAAGV 148 (149)
T ss_pred HHHHHHHhccchhhHhHHHHHHHHHHHHhccCh------HHHHHHhHHHHHHhhc
Confidence 999999999999999999999999999999997 8999999888877654
No 5
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.85 E-value=1.1e-20 Score=162.77 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 024983 49 VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRG 128 (259)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec~ie~~Rg 128 (259)
....++.+|.+.|.+++++.+..+.+ . .+++...++. +..+.++++++||+||++|+++||+++++|+
T Consensus 18 d~G~af~~G~vgG~~~~~~~G~rnsp----~-----g~rl~g~l~~---~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~ 85 (164)
T PTZ00236 18 DMGGAFSMGCIGGFIWHFLKGMRNSP----K-----GERFSGGFYL---LRKRAPILGGNFAIWGGLFSTFDCTLQYLRG 85 (164)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCC----C-----cchHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556666666666666666544332 1 2234455543 4567888999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 024983 129 KEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMW 182 (259)
Q Consensus 129 K~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f 182 (259)
|||+||+++|||+||++|++++|+ ++++.+++..+++.++|+.++-.+
T Consensus 86 K~D~~Nsi~AG~~TGa~l~~r~G~------~~~~~~a~~Gg~~~~~ie~~~i~~ 133 (164)
T PTZ00236 86 KEDHWNAIASGFFTGGVLAIRGGW------RSAVRNAIFGGILLGIIELVSIGM 133 (164)
T ss_pred cCchHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 544544444444444444444433
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.4e-20 Score=161.88 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=96.5
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHH
Q 024983 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (259)
Q Consensus 42 ~~~E~cv-~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~e 120 (259)
+++++|- +.+++++.|.++.++-|..++..... ....+..++ .+....|++||+||++||.++
T Consensus 12 riv~d~g~afamg~igG~~f~~ikG~~nap~G~r---------~~gg~~av~-------~~ap~~ggsFAvwgglfSt~d 75 (183)
T KOG1652|consen 12 RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGAR---------LVGGISAVK-------MRAPQSGGSFAVWGGLFSTVD 75 (183)
T ss_pred eeeccccchhhhcccccceeeeeeeeecCCcccc---------cccchhhhh-------ccCcccccceeeeechhhHHH
Confidence 4567787 88888888888888888777543321 011222222 345568999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 024983 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMW 182 (259)
Q Consensus 121 c~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f 182 (259)
|++..+|+|||+||++++||+||++|+.++|+ ++++.+|+.|+++.+.++.++..+
T Consensus 76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~------~a~~~sa~~~g~~lamieg~g~~~ 131 (183)
T KOG1652|consen 76 CALVAIRKKEDPWNSIVSGAATGGLLAARGGP------KAMLTSAITGGLLLAMIEGLGIQV 131 (183)
T ss_pred HHHHHHhcccchHHHHHHHhhccceeeccccH------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999997 888899999999998888887765
No 7
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5e-17 Score=141.96 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=128.3
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHhCCchhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCC--------------
Q 024983 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTP-------------- 78 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~cv-~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~-------------- 78 (259)
|.+|+-+.+++. +.=+-+.+.........-++|+ +++++.+.|+.+|...|.+..++.+..+..
T Consensus 14 ~s~~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl 92 (191)
T COG5596 14 PSPNAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGL 92 (191)
T ss_pred CCCCcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccce
Confidence 345666666664 2234455666666677778999 999999999999999999998876411111
Q ss_pred ---CCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCC
Q 024983 79 ---PPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGA 155 (259)
Q Consensus 79 ---~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~ 155 (259)
....+++.|++..+++ +..+++..++|||+.|..|++++|+++.+|+|||+.|++.+|++||+.+..+.|+
T Consensus 93 ~~~i~~~~~r~q~~~~~~n---~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~--- 166 (191)
T COG5596 93 FSTIDCTPFRLQLKEQLNN---AGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGP--- 166 (191)
T ss_pred eeccccchHHHHHhhcccc---ccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccc---
Confidence 1123467788899988 6678888999999999999999999999999999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhh
Q 024983 156 NPAVNAFTSGLLFAIFQGCSFKVSEM 181 (259)
Q Consensus 156 ~~~~~ai~gga~fAafsga~~~~g~~ 181 (259)
+++..++++|++|++++.....+
T Consensus 167 ---qa~~~~~a~~aa~s~~~~~~~~~ 189 (191)
T COG5596 167 ---QAMPMGGAGFAAFSAGITLAMKS 189 (191)
T ss_pred ---cccccCccchhhhhhhHHhhhhc
Confidence 99999999999999999776543
No 8
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.5e-14 Score=126.11 Aligned_cols=123 Identities=20% Similarity=0.137 Sum_probs=99.2
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHH
Q 024983 43 PVEAA-IVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (259)
Q Consensus 43 ~~E~c-v~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec 121 (259)
..|++ ..|..+++.|+++|.+.|++....+.+ +..+.++++.+.++.. + .+...++++.++++.+|+++|.
T Consensus 73 w~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e-----~~~~~Klr~nrILN~~--t-~~G~~~gN~lG~laL~Ysaies 144 (206)
T KOG3324|consen 73 WFENLTFGTGWAYLTGSAIGAFNGLILGLKNTE-----NGASGKLRLNRILNSV--T-RRGRFWGNTLGSLALMYSAIES 144 (206)
T ss_pred hhhhhheeccchhccchhhhhHHHHHHhhhcCC-----CCCccchhHHHHhhhc--c-ccccccccchhHHHHHHHHHHH
Confidence 44554 499999999999999999999766532 1234566666666652 2 3344599999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 024983 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVS 179 (259)
Q Consensus 122 ~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g 179 (259)
.++..|++||++|+++||.+||+++....|+ +++..+++..+...++..-..
T Consensus 145 gI~~~R~~dd~lnsv~AGalTGalyrs~~Gl------r~~av~ga~g~~aa~aw~l~k 196 (206)
T KOG3324|consen 145 GIEATRGKDDDLNSVAAGALTGALYRSTRGL------RAAAVAGAVGGTAAAAWTLGK 196 (206)
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhcCCCc------hHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999996 888888888877776664433
No 9
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.03 E-value=1.9e-10 Score=82.81 Aligned_cols=57 Identities=32% Similarity=0.518 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 024983 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
.+-..+||+.+||++|..+|+++.++..+|..||+++|++++|+. |||.+|+.+|++
T Consensus 5 ~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~ 62 (64)
T PF00536_consen 5 VEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQK 62 (64)
T ss_dssp HHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999988 999999999974
No 10
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=98.73 E-value=6.9e-09 Score=72.90 Aligned_cols=55 Identities=35% Similarity=0.541 Sum_probs=52.3
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 024983 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
....||+.+|+++|...|++..+|...|+.+|+++|++++|+. |+|.+|+.+|++
T Consensus 6 ~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~ 61 (63)
T cd00166 6 DVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQK 61 (63)
T ss_pred HHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999997 999999999975
No 11
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=98.66 E-value=1.1e-08 Score=73.81 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=52.3
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCC-CcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 024983 197 RTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~-~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
....||+++||++|..+|+.-.++. ..|+.||+++|+++|| ++|+|.+||++|++
T Consensus 8 ~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~ 64 (66)
T PF07647_consen 8 DVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQE 64 (66)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999999 9999999999999999 89999999999975
No 12
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=98.60 E-value=2.6e-08 Score=70.50 Aligned_cols=55 Identities=33% Similarity=0.570 Sum_probs=52.3
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCC-hhhhhcCCC-CCCchHHHHHhhhh
Q 024983 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLT-DSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~-~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
...++|+.+|+++|..+|++..++..+|..++ +++|++++| ++|+|++|++.|+.
T Consensus 8 ~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~ 64 (68)
T smart00454 8 SVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQK 64 (68)
T ss_pred HHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999 999999999 99999999999975
No 13
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=98.47 E-value=3.4e-08 Score=88.62 Aligned_cols=60 Identities=33% Similarity=0.339 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCC-CCCchHHHHHhhhhCcc
Q 024983 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRDPE 254 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~~~~ 254 (259)
.+-...+|..|||.+|.+.|...++++++|++||+++|++++| +.|||.+|+++|.....
T Consensus 151 ~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~ 211 (216)
T KOG4374|consen 151 TEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRR 211 (216)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhcccc
Confidence 4566789999999999999999999999999999999999999 99999999999976543
No 14
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=1.8e-05 Score=69.93 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=63.7
Q ss_pred CcHHHHHHHH-HHHHHhHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHH---------HHHHHHH
Q 024983 101 GPLVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAI 170 (259)
Q Consensus 101 ~~~~~a~~FA-viGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~---------gga~fAa 170 (259)
.....+.||| +||++++.++|..+++|.++|.||....|++||..++..... .+.+.+.|. +++.+++
T Consensus 77 ~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~ 154 (191)
T COG5596 77 LVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGA 154 (191)
T ss_pred cccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhh
Confidence 3345788999 999999999999999999999999999999999999988875 333466666 6677777
Q ss_pred HHHHHHHhhhh
Q 024983 171 FQGCSFKVSEM 181 (259)
Q Consensus 171 fsga~~~~g~~ 181 (259)
|.|+..+.-.-
T Consensus 155 ~TGa~~~~~~g 165 (191)
T COG5596 155 FTGAALASSAG 165 (191)
T ss_pred hhhHHHHhhcc
Confidence 77776655443
No 15
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00016 Score=66.47 Aligned_cols=81 Identities=22% Similarity=0.255 Sum_probs=62.0
Q ss_pred hcCCcHHHHHHHHHHHHHhHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 024983 98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177 (259)
Q Consensus 98 ~~~~~~~~a~~FAviGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~ 177 (259)
+.++++..|--.|++.+.|-++...+..+|+|+|.||=++||.+||+++.+.-|.++. +.+.+.|+.+.+.+++...-
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~--aa~vilG~~lG~tv~~~l~l 204 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGL--AAGVILGALLGTTVGGLLML 204 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHH--hhcceeehhhcchHHHHHHH
Confidence 4567777888889999999999999999999999999999999999999888776222 34455555555555555444
Q ss_pred hhh
Q 024983 178 VSE 180 (259)
Q Consensus 178 ~g~ 180 (259)
+..
T Consensus 205 ~q~ 207 (270)
T KOG4608|consen 205 FQK 207 (270)
T ss_pred HHH
Confidence 433
No 16
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.66 E-value=0.005 Score=62.05 Aligned_cols=129 Identities=22% Similarity=0.321 Sum_probs=89.0
Q ss_pred HHHHHHHhHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 024983 109 FAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQSTQRP 188 (259)
Q Consensus 109 FAviGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f~~~~~~ 188 (259)
--.+|+.|-+.|.+++++-+|-|+..-| |++-+++.=-+.++-+.+.+..-++--+-.-+=+++.+..-+|
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseI------GAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qVPgW--- 465 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEI------GAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGW--- 465 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHH------HHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccCCCc---
Confidence 3468999999999999999999998765 4454444322223333443333332222222223444444333
Q ss_pred CchhHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhh-cCCCCCC-chHHHHHhhhh
Q 024983 189 TADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALR-DVRIPPG-PRLLILDHIQR 251 (259)
Q Consensus 189 ~~~d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~-~~~ip~g-pr~~il~~~~~ 251 (259)
.-+-...|+++.|+++|-..|.|-+++-+-|--||+.+|+ ||+.--| -|++.|.+++.
T Consensus 466 -----t~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqt 525 (832)
T KOG3678|consen 466 -----TCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQT 525 (832)
T ss_pred -----chHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 2334567999999999999999999999999999999998 7887766 57888877764
No 17
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=92.15 E-value=1.9 Score=37.95 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=91.2
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhh-hhhhhhhhcCCcHHHHHHHHHHHHHhHHH
Q 024983 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVA-PFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (259)
Q Consensus 42 ~~~E~cv-~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~-~~k~s~~~~~~~~~~a~~FAviGgvysg~ 119 (259)
+++++|. ...+|.+.|++.|++-|+........+ ...++ +.+++..++ ...+.--+++.++.+.+
T Consensus 12 r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl----------~g~l~av~~rap~~g---~~Fav~g~lys~~ec~i 78 (170)
T TIGR00980 12 RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL----------VGAMRAIKTRAPVLG---GNFAVWGGLFSTIDCAV 78 (170)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh----------hHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHH
Confidence 4677888 778888888888888888776454431 23333 444433233 34777778889999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024983 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQ 183 (259)
Q Consensus 120 ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f~ 183 (259)
+..-++-=-.+=+.-..+.|.+-++-=+.+.- +..++.+++++++|.++-..+.+...
T Consensus 79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 98877766788899999999998887666655 48999999999999999888776543
No 18
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=90.52 E-value=0.15 Score=37.35 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=36.0
Q ss_pred HHHhhhC--chhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 024983 200 GMLDKLG--LQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 200 ~~l~~lg--~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
.||+..| .++|..-|...- +.|--++-..||+.|||+==|..||.+.++
T Consensus 3 tFL~~IGR~~~~~~~kf~~~w---~~lf~~~s~~LK~~GIp~r~RryiL~~~ek 53 (57)
T PF09597_consen 3 TFLKLIGRGCEEHAEKFESDW---EKLFTTSSKQLKELGIPVRQRRYILRWREK 53 (57)
T ss_pred HHHHHHcccHHHHHHHHHHHH---HHHHhcCHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4666666 566665554422 445557778999999999999999998876
No 19
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=90.02 E-value=2.7 Score=33.70 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhccc
Q 024983 46 AAI-VTATTAINGAAIGAFLGVMTQDLT 72 (259)
Q Consensus 46 ~cv-~t~~g~v~Gg~lG~~~G~~~~s~~ 72 (259)
+|. ++..+.+.|+++|+++|.+....+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~ 28 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAIS 28 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 889999999999999999998764
No 20
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=88.40 E-value=0.21 Score=48.34 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=49.1
Q ss_pred HHHHHHhhhCchhhHHh-hhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 024983 197 RTRGMLDKLGLQNYTKN-FKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~-~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
--.+||..+|||+|... ++.|.=|-+++-.+++++|-+++|= |+=|.+||..|+.
T Consensus 217 ~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~ 273 (361)
T KOG4384|consen 217 SLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVEL 273 (361)
T ss_pred HHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35689999999999988 5777778999999999999999994 8999999999986
No 21
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=82.01 E-value=1.3 Score=33.51 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhcccC-CCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHH
Q 024983 46 AAI-VTATTAINGAAIGAFLGVMTQDLTS-SLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (259)
Q Consensus 46 ~cv-~t~~g~v~Gg~lG~~~G~~~~s~~~-~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec 121 (259)
+|. +--+++.+|+.+|..+|.+....+. ....++ + .+++.+ +.-....+..|+.+=++=+.+.|
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~-----~-~~~~~l------g~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARG-----R-GLMRTL------GKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCC-----c-chHhHH------hHHHhcchhHHHHHHhhhccccC
Confidence 455 5566666666666666666654432 111111 1 222222 23334456677776555555444
No 22
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.25 E-value=2.4 Score=42.02 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Q 024983 101 GPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFS 147 (259)
Q Consensus 101 ~~~~~a~~FAviGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~lg 147 (259)
.....+.-.+.+-++|.++.|++.+++-+||..|+++||++++..+.
T Consensus 298 enlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smm 344 (460)
T KOG1398|consen 298 ENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMM 344 (460)
T ss_pred ccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheee
Confidence 34446666788999999999999999999999999999999886553
No 23
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=2.2 Score=32.86 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=39.2
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHHHHHH
Q 024983 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCV 122 (259)
Q Consensus 45 E~cv-~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k~s~~~~~~~~~~a~~FAviGgvysg~ec~ 122 (259)
.+|+ |--++.++|+++|...|.+...... ++.-+.. + .+++. ++.-+...+.+|+++=++=+++.|.
T Consensus 5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~-lR~g~~g---~-~~vr~------iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 5 PSCFDKIKMGLMMGGAVGGATGALFGGFAA-LRYGPRG---R-GLVRT------IGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred ccHHHHHHHHHHHHhhhhhhhhhhccchhh-eeecCCh---h-HHHHH------HhHHHHhccchhhhhhhhhhheecC
Confidence 4777 6667777777766666666655443 1111100 2 22222 2334455778899888888888875
No 24
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=70.77 E-value=15 Score=28.38 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024983 50 TATTAINGAAIGAFL 64 (259)
Q Consensus 50 t~~g~v~Gg~lG~~~ 64 (259)
.+++++.|+++|.++
T Consensus 77 vgiAagvG~llG~Ll 91 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 25
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=69.51 E-value=2.4 Score=45.62 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhCchhhHHhhhh-ccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 024983 193 VYYARTRGMLDKLGLQNYTKNFKR-GLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 193 ~~y~r~~~~l~~lg~~~y~~~~~~-~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
.-|-..-.||+..+++.|..+|.+ |.-+.+.+.-+|-+||..++|- +|.-++||.+||.
T Consensus 921 ~~f~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~ 981 (996)
T KOG0196|consen 921 TPFRSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQA 981 (996)
T ss_pred cccCCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHH
Confidence 347778899999999999999976 5667888999999999999997 8999999999975
No 26
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.40 E-value=23 Score=29.24 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhHHHHHHHHHHhhhCc
Q 024983 137 VAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQSTQRPTADDVYYARTRGMLDKLGL 207 (259)
Q Consensus 137 iAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f~~~~~~~~~d~~y~r~~~~l~~lg~ 207 (259)
++|++.|..++...+. -+++-+|++.+.+.+++ ..+..++..+.-.+|--.|-+....+.++|+
T Consensus 32 ~~gl~~g~~l~~~~~~------w~~~p~~~lig~~l~v~-~gg~~l~rlKRGrPe~yl~r~l~~~~~~~~l 95 (111)
T TIGR03750 32 AAGLVLGLLLALLAGP------WALIPTGALLGPILVVL-IGGKLLARLKRGKPEGYLYRKLEWKLARLGL 95 (111)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HhHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Confidence 4455555555555553 44454555555544433 4455565556544455567778888888875
No 27
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=66.10 E-value=3.5 Score=38.76 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=38.0
Q ss_pred HHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCC
Q 024983 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI 237 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i 237 (259)
...||.+|+|-.|...|+.-.|+-..||+|+.+++++++.
T Consensus 215 V~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~LGV 254 (272)
T KOG4375|consen 215 VNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRGLGV 254 (272)
T ss_pred HHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhcccc
Confidence 5679999999999999999999999999999999999876
No 28
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=65.85 E-value=18 Score=27.98 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCchhhHHH--HHHHHHHHHHHHHHHHHhhhh
Q 024983 18 AIKDVQFKLKELENGYKSWLAKQPLPVEAAI--VTATTAINGAAIGAFLGVMTQ 69 (259)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~w~~~q~~~~E~cv--~t~~g~v~Gg~lG~~~G~~~~ 69 (259)
-+++.+.++++...+.+...+......+..| +=..+.+...++|+++|.+..
T Consensus 39 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 39 ALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444333444445 557788888888888888753
No 29
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=61.56 E-value=3.5 Score=28.61 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=6.5
Q ss_pred hhhhcCCCCCCc
Q 024983 230 SALRDVRIPPGP 241 (259)
Q Consensus 230 ~~l~~~~ip~gp 241 (259)
+.|++.|++|||
T Consensus 13 ~~L~~~G~~~GP 24 (43)
T PF03020_consen 13 EELREYGEPPGP 24 (43)
T ss_dssp HCCCCCT-S---
T ss_pred HHHHHcCCCCCC
Confidence 467889999999
No 30
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=60.32 E-value=37 Score=28.17 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhHHHHHHHHHHhhhC
Q 024983 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQSTQRPTADDVYYARTRGMLDKLG 206 (259)
Q Consensus 136 iiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f~~~~~~~~~d~~y~r~~~~l~~lg 206 (259)
.++|++.|..++.-.|. -+++-+|+..+.+.+++ ..+..++..+.-.+|--.|.+....|.+.|
T Consensus 34 ~~~g~~~gl~la~~~g~------~a~~pt~~ll~~~~~v~-~gg~~l~rlKRGKP~~yl~r~l~~~l~~~g 97 (121)
T PF11990_consen 34 FVAGLVVGLPLALLTGW------WAMIPTGALLGPILGVF-VGGKLLARLKRGKPEGYLYRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HhHHHHHHHHcCCchhHHHHHHHHHHHHhc
Confidence 44566666666666664 34444555555544444 334445454544445557888888888876
No 31
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=55.14 E-value=34 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 024983 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEM 181 (259)
Q Consensus 130 ~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~ 181 (259)
++.....+.|.+.|++++...|..+ ..++.+++..+++.++.-.....
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~----~ga~~GAa~Ga~~G~~~g~~~~~ 97 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNG----RGAAIGAAAGAAVGAAAGAARGR 97 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCc----cchHHHHHHHHHHHHHhhhhhhh
Confidence 4444555667777888887766422 34555555555544444333333
No 32
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=53.14 E-value=14 Score=30.20 Aligned_cols=25 Identities=28% Similarity=0.609 Sum_probs=17.0
Q ss_pred CChhhhhc-CCCCCCchH-HHHHhhhh
Q 024983 227 LTDSALRD-VRIPPGPRL-LILDHIQR 251 (259)
Q Consensus 227 ~~~~~l~~-~~ip~gpr~-~il~~~~~ 251 (259)
+|=.+|.+ +++||||.. .||++|..
T Consensus 105 I~G~DLi~~lg~~pGp~iG~iL~~l~~ 131 (149)
T PF13735_consen 105 INGNDLIEALGIKPGPWIGEILERLLE 131 (149)
T ss_dssp S-HHHHHHHHT--SSCHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 78888999 799999997 46666644
No 33
>PRK10404 hypothetical protein; Provisional
Probab=50.49 E-value=23 Score=28.50 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhh
Q 024983 55 INGAAIGAFLGVM 67 (259)
Q Consensus 55 v~Gg~lG~~~G~~ 67 (259)
..++++|+++|++
T Consensus 85 GiaagvGlllG~L 97 (101)
T PRK10404 85 GVGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHHHH
Confidence 3444556666655
No 34
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=49.89 E-value=76 Score=26.20 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=35.1
Q ss_pred HhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 024983 125 RLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEM 181 (259)
Q Consensus 125 ~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~ 181 (259)
++..-=-.-||++-|+.+|+++|.-.-..+.++.+++=.+-.+|.+.+.+....-+.
T Consensus 33 ~~~~iPCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~ 89 (118)
T PF12597_consen 33 NVHKIPCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRY 89 (118)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 344444456777878877777776665544444566556666677766666555543
No 35
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=49.39 E-value=15 Score=39.89 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 024983 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
.-+....||+.++|-+|-..|.|--+--..|.+|--.+|+|+++- -|=-++||..|+.
T Consensus 999 ~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkd 1057 (1099)
T KOG1170|consen 999 TSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKD 1057 (1099)
T ss_pred cHHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999984 5888999998864
No 36
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.17 E-value=7.5 Score=37.72 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=44.9
Q ss_pred HHHhhhCc-----hhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 024983 200 GMLDKLGL-----QNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 200 ~~l~~lg~-----~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
+|.+.-|+ .||.+.|-...|.++-|+-||.+-|+|+||- .|--+-||.|++.
T Consensus 6 qFF~~AGIPs~~A~~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~ 63 (389)
T KOG3930|consen 6 QFFVRAGIPSEIAKKYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIKA 63 (389)
T ss_pred HHHHHcCCCchHHhhHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHH
Confidence 44455554 4899999999999999999999999999996 6999999999975
No 37
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=48.86 E-value=59 Score=24.92 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=31.6
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHhCCchhhHH--HHHHHHHHHHHHHHHHHHhh
Q 024983 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAA--IVTATTAINGAAIGAFLGVM 67 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~c--v~t~~g~v~Gg~lG~~~G~~ 67 (259)
.+++.+++++.|+.++|+..+---.- ...... +---+|.+-|.++|+++=.+
T Consensus 9 v~~~d~~~i~~rLd~iEeKVEf~~~E--~~Qr~Gkk~GRDiGIlYG~viGlli~~~ 62 (70)
T TIGR01149 9 VEPDEFNEVMKRLDEIEEKVEFVNGE--VAQRIGKKVGRDIGILYGLVIGLILFLI 62 (70)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHhhhHHHHHHHHHHHHHHHHH
Confidence 45688999999999999887632111 011111 13345667777777766443
No 38
>KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=47.40 E-value=7.2 Score=40.20 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=35.1
Q ss_pred HHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCC
Q 024983 200 GMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPG 240 (259)
Q Consensus 200 ~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~g 240 (259)
.||+.|+|.||..+|+. -+-+++=+|+|..|+.|||=-|
T Consensus 480 ~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~~~Gv~a~ 518 (569)
T KOG3791|consen 480 EWLKSLRLHKYTNALKS--TTWFELLILSDMKLQHVGVLAL 518 (569)
T ss_pred HHHHhccchhhhccccC--ccHHHhhccchhhcccchhhhh
Confidence 69999999999999998 7888999999999999998544
No 39
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=47.11 E-value=98 Score=27.16 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=83.2
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhh-hhhhhcCCcHHHHHHHHHHHHHhHHH
Q 024983 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQ-QVQAVAGGPLVQARNFAVITGVNAGI 119 (259)
Q Consensus 42 ~~~E~cv-~t~~g~v~Gg~lG~~~G~~~~s~~~~~~~~~~~~~~~~q~~~~~k-~s~~~~~~~~~~a~~FAviGgvysg~ 119 (259)
++.++|- .-.+|++.|++.+++-|+ .++-...- ....++.++ ++-.++ .+.+.--+++.++.+.+
T Consensus 14 ri~dd~G~af~~G~vgG~~~~~~~G~-rnsp~g~r---------l~g~l~~~~~rap~~g---~~FAv~G~~ys~~ec~~ 80 (164)
T PTZ00236 14 RIIEDMGGAFSMGCIGGFIWHFLKGM-RNSPKGER---------FSGGFYLLRKRAPILG---GNFAIWGGLFSTFDCTL 80 (164)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHH-HhCCCcch---------HHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHH
Confidence 4677887 445555555555555554 54433321 223444444 322233 34666678888899999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 024983 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMW 182 (259)
Q Consensus 120 ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f 182 (259)
+..=.+-=-.+-+.-..+.|.+-++--+.++-. .+++.+|+++++|.++-..+.+.+
T Consensus 81 ~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~------~~a~~Gg~~~~~ie~~~i~~~~~~ 137 (164)
T PTZ00236 81 QYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAV------RNAIFGGILLGIIELVSIGMNRRQ 137 (164)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988877777888999999999988777777663 889999999998888887777665
No 40
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=46.33 E-value=64 Score=25.15 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=32.0
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHhCCchhhHH--HHHHHHHHHHHHHHHHHHhhh
Q 024983 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAA--IVTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~c--v~t~~g~v~Gg~lG~~~G~~~ 68 (259)
.+++.+++++.|+.++|+..+---.- ...... +---+|.+-|.++|+++=++.
T Consensus 12 v~~~d~~~i~~rLD~iEeKVEftn~E--i~Qr~GkkvGRDiGIlYG~viGlli~~i~ 66 (77)
T PRK01026 12 VDPKDFKEIQKRLDEIEEKVEFTNAE--IFQRIGKKVGRDIGILYGLVIGLLIVLVY 66 (77)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999887632111 011111 123356677777777665444
No 41
>PRK10132 hypothetical protein; Provisional
Probab=42.01 E-value=53 Score=26.78 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhh
Q 024983 53 TAINGAAIGAFLGVM 67 (259)
Q Consensus 53 g~v~Gg~lG~~~G~~ 67 (259)
+...+.++|+++|++
T Consensus 89 svgiaagvG~llG~L 103 (108)
T PRK10132 89 SVGTAAAVGIFIGAL 103 (108)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555665555
No 42
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=41.08 E-value=68 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHhhhhcCC
Q 024983 130 EDLQSSVVAAFGSGAAFSLVSGM 152 (259)
Q Consensus 130 ~D~~NsiiAG~~TGa~lg~~sG~ 152 (259)
.+.+..+++++++|++.+...++
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~ 45 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGP 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 34566678888889888888886
No 43
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=39.61 E-value=15 Score=25.60 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=9.9
Q ss_pred hhhhcCCCCCCc
Q 024983 230 SALRDVRIPPGP 241 (259)
Q Consensus 230 ~~l~~~~ip~gp 241 (259)
..|++.|+||||
T Consensus 13 ~~L~~~G~~~gP 24 (44)
T smart00540 13 AELKQYGLPPGP 24 (44)
T ss_pred HHHHHcCCCCCC
Confidence 346789999999
No 44
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=38.45 E-value=6.3 Score=41.90 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=34.8
Q ss_pred HHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhc
Q 024983 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRD 234 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~ 234 (259)
+++||.+|||.+|...|-.-+++---|-+||-.+||-
T Consensus 678 gneWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~ 714 (916)
T KOG0249|consen 678 GNEWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRG 714 (916)
T ss_pred ccccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5789999999999999999999999999999999984
No 45
>COG4803 Predicted membrane protein [Function unknown]
Probab=38.19 E-value=28 Score=30.57 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=37.6
Q ss_pred CchhhHHHHHHHHHHhHHHHHH---------HHHhCCchhhHHH-HHHHHHHHHHHHHHHHHhhh
Q 024983 14 LPQKAIKDVQFKLKELENGYKS---------WLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~---------w~~~q~~~~E~cv-~t~~g~v~Gg~lG~~~G~~~ 68 (259)
|...--+++..++.+|+.+.-- |-..--.+.+-.+ .|+.|++.|+..|.++|+++
T Consensus 12 ~~e~~Aeev~~~l~~LqkE~LI~L~DAvvvvk~~~gkvklkQ~~Nlt~aGa~sGafWG~LiGllF 76 (170)
T COG4803 12 DDEDKAEEVRERLNELQKEYLITLEDAVVVVKDEDGKVKLKQLMNLTGAGAVSGAFWGMLIGLLF 76 (170)
T ss_pred CCcchHHHHHHHHHHhhHHHheeccceEEEEeCCCCCeeHHHHhhhhhhccccccHHHHHHHHHH
Confidence 3344567888888888776531 1112223444555 88999999999999999988
No 46
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=36.74 E-value=1.3e+02 Score=26.65 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=17.6
Q ss_pred hhhhcCCCCCCchHHHHHhhhhCccc
Q 024983 230 SALRDVRIPPGPRLLILDHIQRDPEL 255 (259)
Q Consensus 230 ~~l~~~~ip~gpr~~il~~~~~~~~~ 255 (259)
.-+++-++|+----+|.+++.+||+.
T Consensus 87 ~iy~~~Gl~~~~a~~i~~~l~~~~~~ 112 (213)
T PF01988_consen 87 EIYRAKGLSEEDAEEIAEELSKDKDA 112 (213)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhCchH
Confidence 34556677777777777777777664
No 47
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=36.20 E-value=15 Score=24.52 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.6
Q ss_pred CcccCCChhhhhcCCCCC
Q 024983 222 STLPLLTDSALRDVRIPP 239 (259)
Q Consensus 222 ~~l~~~~~~~l~~~~ip~ 239 (259)
.+|.-|+|..|+|+||-.
T Consensus 18 ~~L~~Lsd~~L~DIGl~R 35 (40)
T PF06568_consen 18 RELAELSDRQLADIGLTR 35 (40)
T ss_pred HHHccCCHHHHHHcCCCH
Confidence 456678999999999964
No 48
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=34.71 E-value=91 Score=32.65 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=46.8
Q ss_pred chhHH-HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCchhHHHHHHHHHHhhhCc
Q 024983 131 DLQSS-VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSEMWQSTQR--PTADDVYYARTRGMLDKLGL 207 (259)
Q Consensus 131 D~~Ns-iiAG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafsga~~~~g~~f~~~~~--~~~~d~~y~r~~~~l~~lg~ 207 (259)
|..|+ +++|.+-|+++-.--+. ....+++=|+.. +.+.+.+.||-.-. +-.++.+|.|..+.++
T Consensus 517 dl~np~VvaGl~~G~~lpylFs~--------~tmtAVgrAA~~-vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T---- 583 (703)
T COG3808 517 DLSNPYVVAGLLLGGLLPYLFSG--------ITMTAVGRAAME-VVEEVRRQFREIPGIMEGKAKPDYGRCVDILT---- 583 (703)
T ss_pred ecCChHHHHHHHHhhHHHHHhcc--------hHHHHHHHHHHH-HHHHHHHHHhhCCccccCCcCCchhHHHHHHH----
Confidence 44554 56888888877554331 233455555544 45677888865321 2235668999998775
Q ss_pred hhhHHhhhhccCCCCcccCCChhhhhcCCCC
Q 024983 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIP 238 (259)
Q Consensus 208 ~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip 238 (259)
+++|||+-||
T Consensus 584 ---------------------~aAl~eMi~P 593 (703)
T COG3808 584 ---------------------KAALKEMIIP 593 (703)
T ss_pred ---------------------HHHHHHhcch
Confidence 4799999887
No 49
>PLN02975 complex I subunit
Probab=34.07 E-value=91 Score=25.27 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHH---hhhhhhccCCC
Q 024983 161 AFTSGLLFAIFQGCSFK---VSEMWQSTQRP 188 (259)
Q Consensus 161 ai~gga~fAafsga~~~---~g~~f~~~~~~ 188 (259)
++..+.+.+++.|.+.. -..+|.+++..
T Consensus 58 ~mr~ag~iG~~gGf~~aYq~S~~Rf~G~~EN 88 (97)
T PLN02975 58 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN 88 (97)
T ss_pred HHHHHHHHHHhhhHHhhhcccchhhcCCCCC
Confidence 33444444555555443 35678777644
No 50
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=33.89 E-value=12 Score=34.30 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=38.9
Q ss_pred HHHhh-hCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhh
Q 024983 200 GMLDK-LGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQ 250 (259)
Q Consensus 200 ~~l~~-lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~ 250 (259)
..|++ +||++|.+.|....+.-.++--++++.|.+++|= -|-|...|..++
T Consensus 122 ~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~e 174 (216)
T KOG4374|consen 122 SLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIE 174 (216)
T ss_pred hHHHHhhcccccchhhhcchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHH
Confidence 45555 9999999999999999888888899988888763 355555444443
No 51
>PRK10132 hypothetical protein; Provisional
Probab=32.54 E-value=1.7e+02 Score=23.84 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024983 49 VTATTAINGAAIGAFLG 65 (259)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G 65 (259)
.-+++++.|+++|++++
T Consensus 89 svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 89 SVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56788888999998875
No 52
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=31.42 E-value=25 Score=32.78 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=11.6
Q ss_pred cccchhHHHHHHHHHHHHhhhh
Q 024983 128 GKEDLQSSVVAAFGSGAAFSLV 149 (259)
Q Consensus 128 gK~D~~NsiiAG~~TGa~lg~~ 149 (259)
..+-+.+..++|.++|++++..
T Consensus 108 ~a~~~L~~Gy~ga~~Gaa~G~~ 129 (243)
T PRK13731 108 ESQGWLNRGYEGAAVGAALGAG 129 (243)
T ss_pred HHHHHHhhchhhHHHHHHhhhh
Confidence 3333444455566666655543
No 53
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=31.41 E-value=40 Score=25.32 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024983 51 ATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 51 ~~g~v~Gg~lG~~~G~~~ 68 (259)
+++.+.|+++|+|++-..
T Consensus 4 ilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555656666655433
No 54
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=31.36 E-value=41 Score=30.79 Aligned_cols=14 Identities=21% Similarity=0.064 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q 024983 165 GLLFAIFQGCSFKV 178 (259)
Q Consensus 165 ga~fAafsga~~~~ 178 (259)
|+..|++..+.+.+
T Consensus 115 GlaGalig~~ada~ 128 (215)
T PF05818_consen 115 GLAGALIGMIADAM 128 (215)
T ss_pred hHHHhHHHHHHhhh
Confidence 66566666555443
No 55
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=31.36 E-value=39 Score=25.17 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHH
Q 024983 190 ADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (259)
Q Consensus 190 ~~d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~ 247 (259)
..++...|....|+++|++ .+|++.||-+|=..+|-+
T Consensus 28 ~~~e~~~~f~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 28 NNDENLRRFARKLKKLGVE---------------------DALRKAGAKDGDTVRIGD 64 (69)
T ss_pred CCHHHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEcc
Confidence 3445678899999999998 899999999997666654
No 56
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=31.35 E-value=18 Score=29.42 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=36.8
Q ss_pred HHHHHHHhHHHHHHHHHhC----CchhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024983 22 VQFKLKELENGYKSWLAKQ----PLPVEAAIVTATTAINGAAIGAFLGVMTQD 70 (259)
Q Consensus 22 ~~~~~~~~~~~~~~w~~~q----~~~~E~cv~t~~g~v~Gg~lG~~~G~~~~s 70 (259)
-.+-.+++.+.++-|+... +--+|+.+-+.-+++..+++|+++|...+-
T Consensus 40 A~~~I~ei~p~Y~PWf~PlwEPPsGEiESLLFaLQAAiGAgiIgY~lG~~~gr 92 (100)
T PRK02898 40 AEEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAALGAGIIGYILGYYKGR 92 (100)
T ss_pred HHHHHHHhCCCCcccccccccCCcchHHHHHHHHHHHHhhhhhheeeeehhhh
Confidence 3344455666788898754 345788889999999999999999988754
No 57
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=30.57 E-value=3.9e+02 Score=23.82 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHh--h-cccchhHHHH--HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHH
Q 024983 103 LVQARNFAVITGVNAGISCVMKRL--R-GKEDLQSSVV--AAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQ 172 (259)
Q Consensus 103 ~~~a~~FAviGgvysg~ec~ie~~--R-gK~D~~Nsii--AG~~TGa~lg~~sG~~~~~~~~~ai~gga~fAafs 172 (259)
...|..-.++|.+|=.+|...+.- | ..+.-||+++ -+.+.|-.++++.=+ +.+.+...+.+|+.+
T Consensus 48 ~~~G~agv~~G~l~P~lD~~~~~~~~~~~~~~~w~~v~R~i~~FvGi~~airkl~-----w~s~~Q~s~~lalln 117 (193)
T PF07281_consen 48 PLWGLAGVLLGLLLPWLDSFLGESKPRSSRKPDWSSVLRSIGAFVGISFAIRKLP-----WSSSLQASITLALLN 117 (193)
T ss_pred HHHHHHHHHHHhhHHHHHHhcccccccCCccccHHHHHHHHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHH
Confidence 344555556666666777766655 2 2345577776 466678888888755 344444445555444
No 58
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=30.48 E-value=1.6e+02 Score=22.66 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=28.5
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHhCCchhhHH--HHHHHHHHHHHHHHHHHH
Q 024983 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAA--IVTATTAINGAAIGAFLG 65 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~c--v~t~~g~v~Gg~lG~~~G 65 (259)
.+++.+.+++.|+.++|+..+---.- ...... +---+|.+-|.++|+++=
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf~~~E--i~Qr~GkkiGRDiGIlYG~v~Glii~ 60 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEFTNAE--IAQRAGKKIGRDIGILYGLVIGLIIF 60 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHhHHhhhHHHHHHHHHHHHHHH
Confidence 35678999999999988877632111 011111 122355666666666543
No 59
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=29.11 E-value=1.6e+02 Score=29.42 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccchhHHHHHHHHHH-------HHhhhhcCCCCCChhHHHHHHHHHHHHHHHHH
Q 024983 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG-------AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (259)
Q Consensus 104 ~~a~~FAviGgvysg~ec~ie~~RgK~D~~NsiiAG~~TG-------a~lg~~sG~~~~~~~~~ai~gga~fAafsga~ 175 (259)
....|||..|++++..= +-|. ++..+...+++++| ++++..-.. ..|+-+++.+|+..+++.+.+
T Consensus 345 ~~~~~~aq~ga~lav~l----k~k~-~~~k~~a~sa~is~~~GITEPaiyGv~l~~--kkp~i~~~ig~~igG~~~g~~ 416 (462)
T TIGR01992 345 IALSNIAQGSAALGIIF----MSRN-EKEKGLSLTSAISAYLGVTEPAMFGVNLKY--KFPFIAAMIGSGLAGLLSGLN 416 (462)
T ss_pred HHHHHHHHHHHHHHHHH----HHCC-HHHHHHHHHHHHHHHhccchHhHHHhccch--hhHHHHHHHHHHHHHHHHHHh
Confidence 45667888888877632 2232 24444445555544 344444332 224566666666666666555
No 60
>PRK10404 hypothetical protein; Provisional
Probab=28.92 E-value=2.1e+02 Score=22.98 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024983 49 VTATTAINGAAIGAFLG 65 (259)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G 65 (259)
.-+++++.|+++|++++
T Consensus 83 avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 83 GIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45678889999998875
No 61
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=28.88 E-value=57 Score=24.21 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHH
Q 024983 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (259)
Q Consensus 193 ~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~ 247 (259)
+-..|....|+++|++ .+|++.||.+|=..+|-+
T Consensus 31 e~~~rf~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 31 ESLRRFQRKLKKMGVE---------------------KALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp GGHHHHHHHHHHTTHH---------------------HHHHTTT--TT-EEEETT
T ss_pred HHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEcC
Confidence 4578899999999998 899999999997666543
No 62
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=28.78 E-value=2.2e+02 Score=24.40 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=25.8
Q ss_pred HHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024983 34 KSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQD 70 (259)
Q Consensus 34 ~~w~~~q~~~~E~cv~t~~g~v~Gg~lG~~~G~~~~s 70 (259)
+.|...- ....+...++|.+.|++.|++.|+....
T Consensus 28 R~~~e~~--~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~ 62 (149)
T TIGR00983 28 RGWFEDL--CFGTGTCYLTGLAIGALNGLRLGLKETQ 62 (149)
T ss_pred CChhhhh--hhhHhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4555432 3456678899999999999999999743
No 63
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=28.17 E-value=48 Score=35.17 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCC
Q 024983 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI 237 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i 237 (259)
++--+-.||.-.||++|.+.|..+.++---|.+||-.+|-++++
T Consensus 624 Dv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll~lkV 667 (861)
T KOG1899|consen 624 DVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLLELKV 667 (861)
T ss_pred hHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhhHHHH
Confidence 45667789999999999999999999999999999999988765
No 64
>COG1647 Esterase/lipase [General function prediction only]
Probab=27.48 E-value=23 Score=32.91 Aligned_cols=128 Identities=19% Similarity=0.200 Sum_probs=85.1
Q ss_pred HHHHHHHhhc-ccchhHHHH-HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHH------HHHHHHHHhhhhhhccCC---
Q 024983 119 ISCVMKRLRG-KEDLQSSVV-AAFGSGAAFSLVSGMGGANPAVNAFTSGLLFA------IFQGCSFKVSEMWQSTQR--- 187 (259)
Q Consensus 119 ~ec~ie~~Rg-K~D~~Nsii-AG~~TGa~lg~~sG~~~~~~~~~ai~gga~fA------afsga~~~~g~~f~~~~~--- 187 (259)
.|-+...+|. +++-+++++ .|+--|++|++.=+.+- +++..+..|+.+. .+++...+. +.+++
T Consensus 69 ~~~v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~--p~K~iv~m~a~~~~k~~~~iie~~l~y~----~~~kk~e~ 142 (243)
T COG1647 69 WEDVEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHY--PPKKIVPMCAPVNVKSWRIIIEGLLEYF----RNAKKYEG 142 (243)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhC--CccceeeecCCcccccchhhhHHHHHHH----HHhhhccC
Confidence 4666777776 667778775 67777888888766421 3688888888876 444444443 33333
Q ss_pred -CCc-hhHHHHHHH--HHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhhCc
Q 024983 188 -PTA-DDVYYARTR--GMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQRDP 253 (259)
Q Consensus 188 -~~~-~d~~y~r~~--~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~~~ 253 (259)
+.. -|.+|.+.+ -+=+...|.+..++-++ .|+.-..|.+.=-.=+|=-||+=---.|++|+.+++
T Consensus 143 k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~-~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~ 211 (243)
T COG1647 143 KDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARR-SLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDD 211 (243)
T ss_pred CCHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh-hhhhcccchhheecccCCCCCHHHHHHHHHhccCCc
Confidence 212 233455555 35555556777777665 466667777777777888899988999999998865
No 65
>PRK00523 hypothetical protein; Provisional
Probab=26.58 E-value=70 Score=24.63 Aligned_cols=15 Identities=13% Similarity=0.417 Sum_probs=8.4
Q ss_pred chhhhhh-hhhhhhhcCCc
Q 024983 85 NPDAVAP-FQQVQAVAGGP 102 (259)
Q Consensus 85 ~~q~~~~-~k~s~~~~~~~ 102 (259)
++++++. +.+ ||+.|
T Consensus 41 ne~mir~M~~Q---MGqKP 56 (72)
T PRK00523 41 TENMIRAMYMQ---MGRKP 56 (72)
T ss_pred CHHHHHHHHHH---hCCCc
Confidence 5655444 443 77775
No 66
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=26.27 E-value=1.5e+02 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024983 49 VTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G~~~ 68 (259)
.+.+=.+.|.++|.+++++.
T Consensus 28 ~~l~k~~~G~~~G~~~s~l~ 47 (75)
T PF04418_consen 28 DTLVKTGLGFGIGVVFSLLF 47 (75)
T ss_pred HHHHHHhhhhhHHHHHHHHH
Confidence 44444445555555555544
No 67
>PRK01844 hypothetical protein; Provisional
Probab=25.16 E-value=61 Score=24.98 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=8.3
Q ss_pred chhhhhh-hhhhhhhcCCc
Q 024983 85 NPDAVAP-FQQVQAVAGGP 102 (259)
Q Consensus 85 ~~q~~~~-~k~s~~~~~~~ 102 (259)
++++++. +.+ ||+.|
T Consensus 40 ne~mir~Mm~Q---MGqkP 55 (72)
T PRK01844 40 NEQMLKMMMMQ---MGQKP 55 (72)
T ss_pred CHHHHHHHHHH---hCCCc
Confidence 5655544 443 77765
No 68
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.54 E-value=66 Score=28.41 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 024983 41 PLPVEAAIVTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 41 ~~~~E~cv~t~~g~v~Gg~lG~~~G~~~ 68 (259)
.-.+.+.+.++.|.+.|+++|+|++++-
T Consensus 41 ~c~~Ka~~sgV~GfglG~~~GlFlas~d 68 (168)
T KOG3225|consen 41 SCAVKAVKSGVTGFGLGGAFGLFLASLD 68 (168)
T ss_pred chhHHHHHhhccccchhhhHHhhhhhcc
Confidence 6678888899999999999999999988
No 69
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.80 E-value=83 Score=23.25 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 024983 51 ATTAINGAAIGAFLGVMTQD 70 (259)
Q Consensus 51 ~~g~v~Gg~lG~~~G~~~~s 70 (259)
..|.+.|+++|...|++...
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 35777888888888888754
No 70
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=23.11 E-value=2e+02 Score=29.08 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhc----CC--CCCChhHHHHHHHHHHHHHHHHH
Q 024983 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVS----GM--GGANPAVNAFTSGLLFAIFQGCS 175 (259)
Q Consensus 103 ~~~a~~FAviGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~lg~~s----G~--~~~~~~~~ai~gga~fAafsga~ 175 (259)
...+.|+|..|++++..= +-|. .+..+-.+++++++-+.|.+- |- ....|+-+++.+|+..+++.+.+
T Consensus 333 ~~~~a~~aq~ga~lav~l----k~Kn-~~~k~~a~sa~isa~~~GITEPaiYGv~L~~kkpfi~~~igg~vGG~~~g~~ 406 (472)
T PRK09796 333 SEIGANLSLGGSSLAVAW----KTKN-PELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMA 406 (472)
T ss_pred HHHHHHHHHHHHHHHHHH----HHcC-HHHHHHHHHHHHHHHHcCCCchhheeeecchhhHHHHHHHHHHHHHHHHHHH
Confidence 345677888887777643 2222 235555556666554333332 00 11234666777777767766655
No 71
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=22.90 E-value=52 Score=26.93 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred CCCCCCchHHHHHhhhhCcccc
Q 024983 235 VRIPPGPRLLILDHIQRDPELK 256 (259)
Q Consensus 235 ~~ip~gpr~~il~~~~~~~~~~ 256 (259)
.+-|.||-|++|+-|+.+|...
T Consensus 81 r~kPsg~AlkLL~ivq~~p~~~ 102 (104)
T COG2944 81 RKKPSGAALKLLRIVQNHPLEV 102 (104)
T ss_pred CcCCCCHHHHHHHHHHhcchhh
Confidence 4679999999999999999754
No 72
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=22.59 E-value=88 Score=25.86 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=22.0
Q ss_pred ccccchhhcccCCchhhHHHHHHHH----HHhHHHHH
Q 024983 2 EKGNEKVMSLVQLPQKAIKDVQFKL----KELENGYK 34 (259)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 34 (259)
+||--|-.-+.+||..+++++...+ +++|.+|+
T Consensus 72 qkgWvGYiya~~~P~k~leei~~~i~keiEelEk~~k 108 (113)
T COG5625 72 QKGWVGYIYATTPPPKPLEEIEEEIMKEIEELEKEFK 108 (113)
T ss_pred hccceeeEecCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556778889999887655 55666655
No 73
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=4.5e+02 Score=21.61 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=13.8
Q ss_pred cccCCchhhHHHHHHHHHHhHHHHH
Q 024983 10 SLVQLPQKAIKDVQFKLKELENGYK 34 (259)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (259)
++.+++....++++.+.+.+-.+.+
T Consensus 30 ssg~~a~~e~~~lR~r~~~~Lk~~r 54 (104)
T COG4575 30 SSGSLAGDEAEELRSKAESALKEAR 54 (104)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHH
Confidence 4455666666666666554433333
No 74
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=2.8e+02 Score=22.83 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhh
Q 024983 54 AINGAAIGAFLGVMT 68 (259)
Q Consensus 54 ~v~Gg~lG~~~G~~~ 68 (259)
...|+++|+++|++.
T Consensus 87 VGvaAaVGlllGlLl 101 (104)
T COG4575 87 VGVAAAVGLLLGLLL 101 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555543
No 75
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=21.30 E-value=4.6e+02 Score=24.70 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCch
Q 024983 192 DVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (259)
Q Consensus 192 d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr 242 (259)
++-+++-+.++++||++. +++.=-++.+.|+-+-+.++++..+..-||
T Consensus 312 ~~~~~~l~~l~~~lglp~---~l~~~gi~~~~l~~ia~~a~~~~~~~~~P~ 359 (366)
T PF00465_consen 312 DDAIDELRALLRSLGLPT---RLSDLGIDEEDLDEIAEAALADQRMKNNPR 359 (366)
T ss_dssp HHHHHHHHHHHHHTT--S---SGGGGT-TGGGHHHHHHHHTCTGGGGGSSS
T ss_pred HHHHHHHHHHHHHhCCCC---CHHHcCCCHHHHHHHHHHHHhCccccCCCC
Confidence 456899999999999986 333334555666666666666655544444
No 76
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.29 E-value=84 Score=32.05 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=29.6
Q ss_pred HHHHHHHH-hhhCchhhHHhhhhccCCCCcccCCC
Q 024983 195 YARTRGML-DKLGLQNYTKNFKRGLLTDSTLPLLT 228 (259)
Q Consensus 195 y~r~~~~l-~~lg~~~y~~~~~~~~~~~~~l~~~~ 228 (259)
.+++.+|| +...|++|+++||+-.++-.+||-+-
T Consensus 137 ~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlA 171 (575)
T KOG4403|consen 137 NERTVQWLINDVELPQYVEAFKAKKVDGKALPRLA 171 (575)
T ss_pred HHHHHHHHHHhcccHHHHHHHHhccCCcccccccc
Confidence 56888887 56789999999999999999999763
No 77
>PRK02126 ribonuclease Z; Provisional
Probab=21.00 E-value=68 Score=30.59 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=19.9
Q ss_pred cCCChhhhhcCCCCCCchHHHHHh
Q 024983 225 PLLTDSALRDVRIPPGPRLLILDH 248 (259)
Q Consensus 225 ~~~~~~~l~~~~ip~gpr~~il~~ 248 (259)
+-++-+.|++.+|||||-+.-|++
T Consensus 177 ~~~~~ek~~~~gi~~g~~~~~Lk~ 200 (334)
T PRK02126 177 INIDKNRLAELGLPPGPWLRELKH 200 (334)
T ss_pred cCcCHHHHHHcCCCCChHHHHHHh
Confidence 457778999999999998776665
No 78
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=20.10 E-value=3e+02 Score=21.30 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=33.0
Q ss_pred CchhhHHHHHHHHHHhHHHHHH-HHHhCCchhhHH--HHHHHHHHHHHHHHHHHHhhhhc
Q 024983 14 LPQKAIKDVQFKLKELENGYKS-WLAKQPLPVEAA--IVTATTAINGAAIGAFLGVMTQD 70 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-w~~~q~~~~E~c--v~t~~g~v~Gg~lG~~~G~~~~s 70 (259)
.++..++++-.|++++|+.++- |-.. ..... +.-=+|.+-|.++|+++-++...
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~Ev---~Qr~GkkiGRDIGILYGlVIGlil~~i~~~ 68 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNGEV---YQRIGKKIGRDIGILYGLVIGLILCMIYIL 68 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999887652 1111 11111 12235677777888777766544
Done!