BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024985
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 6/207 (2%)
Query: 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI 74
P N++ +VLVG+TG GKSATGNSILGR+ F S + +TK CE + + K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK 134
DTPG+FD+ + SKEI++CI + G HA+LLV + R++EE A + FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 KVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRT 194
+ + I++FT YL E P+ ++++ + +R +NK A +
Sbjct: 143 RARSFXILIFT--RKDDLGDTNLHDYL-REAPEDIQDLXDIFGDRYCALNNKAT-GAEQE 198
Query: 195 EQVGKLISLVNSVILENGGQPYSDEIF 221
Q +L+ L+ V+ EN Y++ +
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXY 225
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 6/203 (2%)
Query: 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
R L+LVGRTG GKSATGNSILG+R F S+ G++ VT+ C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80 FDSS-ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFD 138
F S + ++ +E C ++ G HA+LLV + RF+ + A+ + +FG+ V
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVG 198
+M++VFT Y+ + L+E++ C R FDN+ + QV
Sbjct: 140 WMVIVFT--RKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRAT-GREQEAQVV 196
Query: 199 KLISLVNSVILENGGQPYSDEIF 221
+L+ +V ++LE+ G YS+E++
Sbjct: 197 QLLGMVEGLVLEHKGAHYSNEVY 219
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
S +E ++LVG+TG GKSA GNSIL ++AF+SK GS +TKTC + + ++V +ID
Sbjct: 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76 TPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK 135
TP +F E + KE+ +C ++ G H +LLV + R++ + A ++ +FG+
Sbjct: 78 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 136
Query: 136 VFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTE 195
+ IV+FT Y+ K L +++ C R F+N+ + + + +
Sbjct: 137 AMGHTIVLFT--HKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 193
Query: 196 QVGKLISLVNSVILENGGQPYSDEIFAELKK 226
QV +L+ + +++E G Y++ +++ +++
Sbjct: 194 QVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
S +E ++LVG+TG GKSA GNSIL ++AF+SK GS +TKTC + + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK 135
TP +F E + KE+ +C ++ G H +LLV + R++ + A ++ +FG+
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 VFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTE 195
+ IV+FT Y+ K L +++ C R F+N+ + + + +
Sbjct: 120 AMGHTIVLFT--HKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 176
Query: 196 QVGKLISLVNSVILENGGQPYSDEIFAELKK 226
QV +L+ + +++E G Y++ +++ +++
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 207
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 115/209 (55%), Gaps = 5/209 (2%)
Query: 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTP 77
+E ++LVG+TG GKSA GNSIL ++AF+SK GS +TKTC + + ++V +IDTP
Sbjct: 1 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP 59
Query: 78 GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF 137
+F E + KE+ +C ++ G H +LLV + R++ + A ++ +FG+
Sbjct: 60 DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAM 118
Query: 138 DYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQV 197
+ IV+FT Y+ K L +++ C R F+N+ + + + +QV
Sbjct: 119 GHTIVLFT--HKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQV 175
Query: 198 GKLISLVNSVILENGGQPYSDEIFAELKK 226
+L+ + +++E G Y++ +++ +++
Sbjct: 176 KELMDCIEDLLMEKNGDHYTNGLYSLIQR 204
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 5/211 (2%)
Query: 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
S +E ++LVG+TG GKSA GNSIL ++AF+SK GS +TKTC + + ++V +ID
Sbjct: 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76 TPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK 135
TP F E + KE+ +C ++ G H +LLV + R++ + A ++ +FG+
Sbjct: 78 TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 136
Query: 136 VFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTE 195
+ IV+FT Y K L +++ C R F+N+ + + + +
Sbjct: 137 AXGHTIVLFT--HKEDLNGGSLXDYXHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 193
Query: 196 QVGKLISLVNSVILENGGQPYSDEIFAELKK 226
QV +L + ++ E G Y++ +++ +++
Sbjct: 194 QVKELXDCIEDLLXEKNGDHYTNGLYSLIQR 224
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NS++G + + + + + RTM G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVF 137
++ +V+ + ++ I G + VLL + R E + ++ FGK+++
Sbjct: 96 EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFT 145
++V T
Sbjct: 152 CKTLLVLT 159
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NS++G + + + + + RTM G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVF 137
++ +V+ + ++ I G + VLL + R E + ++ FGK+++
Sbjct: 96 EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFT 145
++V T
Sbjct: 152 CKTLLVLT 159
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NS++G + + + + + RTM G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRNRFS--EEGGAAIHSLESLFGKKVF 137
++ +V+ + ++ I G + VLL + ++ E + ++ FGK+++
Sbjct: 96 EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFT 145
++V T
Sbjct: 152 CKTLLVLT 159
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NS++G + + + + + RTM G +N+IDTPGL
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81 DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRNRFS--EEGGAAIHSLESLFGKKVF 137
++ +V+ + ++ I G + VLL + ++ E + ++ FGK+++
Sbjct: 95 EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 150
Query: 138 DYMIVVFT 145
++V T
Sbjct: 151 CKTLLVLT 158
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NSI+G R S + + R+ + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSV-RNRFSEEGGAAIHSLESLFGKKVFDY 139
+ ++ ++ I+K + K I +L V + R ++ FGK +++
Sbjct: 99 EGGYIND-MALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 140 MIVVFT 145
IV T
Sbjct: 157 AIVALT 162
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
T+++ G+ G GKS+T NSI+G R S + + R+ + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSK--AGSSGVTKTCEMQRT--MLKDGQV- 70
S E TL++VG +G GKS NS+ + + S + KT +++++ ++K+G V
Sbjct: 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 71 --VNVIDTPGLFDSSADS 86
+ ++DTPG D+ +S
Sbjct: 65 LLLTIVDTPGFGDAVDNS 82
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK--AGSSGVTKTCEMQRT--MLKDGQV---V 71
E TL++VG +G GKS NS+ + + S + KT +++++ ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFDSSADS 86
++DTPG D+ +S
Sbjct: 63 TIVDTPGFGDAVDNS 77
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK--AGSSGVTKTCEMQRT--MLKDGQV---V 71
E TL++VG +G GKS NS+ + + S + KT +++++ ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFDSSADS 86
++DTPG D+ +S
Sbjct: 91 TIVDTPGFGDAVDNS 105
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-----DGQVVNVIDT 76
+V+ GR GKS+ N++ GR A + VT R +L+ DG +++IDT
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 77 PGLFDSSADSEFVSKE 92
GL ++S + E + E
Sbjct: 63 AGLREASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-----DGQVVNVIDT 76
+V+ GR GKS+ N++ GR A + VT R +L+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 59
Query: 77 PGLFDSSADSEFVSKE 92
GL ++S + E + E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-----DGQVVNVIDT 76
+V+ GR GKS+ N++ GR A + VT R +L+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGXPLHIIDT 59
Query: 77 PGLFDSSADSEFVSKE 92
GL ++S + E + E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 9 DSMPTSPS-NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD 67
DS+ +S S N +VL+G G GKS N G S V +RT++ D
Sbjct: 26 DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTLMVD 83
Query: 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAI 125
G+ +I ++++ ++E++ C+ + A L+V+S+ +R S E + +
Sbjct: 84 GESATII-LLDMWENKGENEWLHD---HCMQVGD----AYLIVYSITDRASFEKASEL 133
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
+++VG GKS N + G+RA S G+TK +Q L++G V ++DTPG+
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKG--IQWFSLENG--VKILDTPGILY 156
Query: 82 SSADSE 87
+ SE
Sbjct: 157 KNIFSE 162
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAG-------SSGVTKTCEMQRT--------M 64
RT+ LVG G+GK+ ++L + K + G ++ T ++ RT +
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 65 LKDGQVVNVIDTPGLFD 81
L G V ++D PG D
Sbjct: 70 LFRGHRVFLLDAPGYGD 86
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSKA---GSSGVTKTCEMQRTMLKDGQVVNVIDTP 77
T+++VGR GKS N ++ K KA GVT+ +Q T+ G+ ++DT
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVK----KKKAIVEDEEGVTRDP-VQDTVEWYGKTFKLVDTC 57
Query: 78 GLFDSSAD 85
G+FD+ D
Sbjct: 58 GVFDNPQD 65
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
+VL+G G GKS N G S V +RT++ DG+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII-LLDMWE 65
Query: 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAI 125
+ ++E++ C+ + A L+V+S+ +R S E + +
Sbjct: 66 NKGENEWLHDH---CMQVGD----AYLIVYSITDRASFEKASEL 102
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDT 76
N +VL+G G GKS N G S V +RT++ DG+ +I
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTLMVDGESATII-L 60
Query: 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAI 125
++++ ++E++ C+ + A L+V+S+ +R S E + +
Sbjct: 61 LDMWENKGENEWLHDH---CMQVGD----AYLIVYSITDRASFEKASEL 102
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPGL 79
+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPGL 79
+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPGL 79
+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPGL 79
+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
+VL+G G GKS N G S V +RT++ DG+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII-LLDMWE 65
Query: 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAI 125
+ ++E++ ++ +G A L+V+S+ +R S E + +
Sbjct: 66 NKGENEWLHDHXMQ-VG------DAYLIVYSITDRASFEKASEL 102
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN +EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTM-LKDGQVVNVIDTPG 78
R +V+ GR GKS+ N+++G+ S T T + ++M L V ++DTPG
Sbjct: 35 RYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG 92
Query: 79 LFD 81
L D
Sbjct: 93 LDD 95
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 22/97 (22%)
Query: 13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS----------------SGVTK 56
T+P N R + + GK+ T +L K G G+T
Sbjct: 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
Query: 57 TCEMQRTMLK------DGQVVNVIDTPGLFDSSADSE 87
T T K D VNVIDTPG D + + E
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVE 103
>pdb|2I2X|A Chain A, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|C Chain C, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|E Chain E, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|G Chain G, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|I Chain I, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|K Chain K, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|M Chain M, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|O Chain O, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 461
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 120 EGGAAIHSLESLFGKKVFDYMIV 142
E GA + S+ES+ GK+VFDY ++
Sbjct: 155 ENGADLLSVESMGGKEVFDYAVL 177
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
+ L GR+ GKS+ NS++ R+ + G T+T ++ D ++ +D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDE--LHFVDVPG 78
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
+TLVL+G +G G+S N++L + K V T R +DG+ + I T +
Sbjct: 20 KTLVLIGASGVGRSHIKNALLSQNPEKF---VYPVPYTTRPPRKSEEDGKEYHFISTEEM 76
Query: 80 FDSSADSEFV 89
+ + +EF+
Sbjct: 77 TRNISANEFL 86
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 72 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 107
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 114 RNRFSEEGGAAIHSLESL-----FGKKVFDYMIVVF 144
RN EEGG A+H +E + F K+ +D+ I V
Sbjct: 57 RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 92
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVT---KTCEMQRTMLKDGQVVNVIDTPG 78
+ L+G GKS N++ G + GVT K E + +G+ V+D PG
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYI--GNWPGVTVEKKEGEFEY----NGEKFKVVDLPG 63
Query: 79 LFDSSADS--EFVSKEIV 94
++ +A+S E ++++ +
Sbjct: 64 VYSLTANSIDEIIARDYI 81
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVV------- 71
E TL +VG +G GKS NS+ + + S K ++RT+ + V
Sbjct: 18 EFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEK---IERTVQIEASTVEIEERGV 74
Query: 72 ----NVIDTPGLFDS 82
V+DTPG D+
Sbjct: 75 KLRLTVVDTPGYGDA 89
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 31 GKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVS 90
G G S L R K +G + +K G+ + ++DTPG+ + E V
Sbjct: 127 GIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVG 186
Query: 91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
+ G KD I + V RF EE
Sbjct: 187 LRLA-VTGAIKDSIINLQDVAVFGLRFLEE 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,095,369
Number of Sequences: 62578
Number of extensions: 267966
Number of successful extensions: 1004
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 54
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.9 bits)