Query 024985
Match_columns 259
No_of_seqs 217 out of 2303
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 1.4E-38 3E-43 256.5 17.1 211 20-234 1-211 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 2.1E-35 4.5E-40 235.7 21.7 196 20-221 1-196 (196)
3 COG1159 Era GTPase [General fu 99.9 3E-25 6.4E-30 180.7 17.0 181 19-225 6-187 (298)
4 COG0218 Predicted GTPase [Gene 99.9 1.2E-22 2.6E-27 157.2 18.7 168 17-210 22-198 (200)
5 TIGR00991 3a0901s02IAP34 GTP-b 99.9 7.6E-23 1.6E-27 170.1 17.6 193 13-210 32-245 (313)
6 PF02421 FeoB_N: Ferrous iron 99.9 6.4E-23 1.4E-27 155.5 12.7 154 20-204 1-156 (156)
7 COG1160 Predicted GTPases [Gen 99.9 1.7E-22 3.8E-27 173.2 16.3 162 20-209 4-165 (444)
8 TIGR00993 3a0901s04IAP86 chlor 99.9 6.8E-22 1.5E-26 176.6 19.0 162 19-184 118-287 (763)
9 TIGR00436 era GTP-binding prot 99.9 6.2E-22 1.3E-26 165.4 15.2 175 21-223 2-177 (270)
10 cd01853 Toc34_like Toc34-like 99.9 1.3E-21 2.9E-26 160.5 15.1 136 15-154 27-166 (249)
11 COG1160 Predicted GTPases [Gen 99.9 2.1E-21 4.4E-26 166.7 16.1 193 18-228 177-370 (444)
12 PRK15494 era GTPase Era; Provi 99.9 5.7E-21 1.2E-25 164.1 16.6 179 18-224 51-230 (339)
13 PRK00089 era GTPase Era; Revie 99.9 6.3E-21 1.4E-25 161.3 15.9 178 19-221 5-182 (292)
14 PRK12298 obgE GTPase CgtA; Rev 99.8 7E-20 1.5E-24 159.4 18.0 178 21-221 161-344 (390)
15 PRK12299 obgE GTPase CgtA; Rev 99.8 4.1E-19 8.9E-24 151.7 20.1 170 20-210 159-329 (335)
16 PF01926 MMR_HSR1: 50S ribosom 99.8 1.3E-19 2.8E-24 132.4 13.9 116 21-146 1-116 (116)
17 cd01897 NOG NOG1 is a nucleola 99.8 3.8E-19 8.3E-24 138.0 16.8 163 20-208 1-167 (168)
18 PRK00093 GTP-binding protein D 99.8 1.1E-18 2.4E-23 155.5 21.7 189 18-226 172-361 (435)
19 PRK12297 obgE GTPase CgtA; Rev 99.8 8.4E-19 1.8E-23 153.5 19.9 167 21-212 160-330 (424)
20 COG0486 ThdF Predicted GTPase 99.8 1.2E-18 2.6E-23 150.2 19.5 163 17-211 215-378 (454)
21 TIGR03594 GTPase_EngA ribosome 99.8 1.9E-18 4E-23 153.8 21.3 190 18-225 171-360 (429)
22 cd01898 Obg Obg subfamily. Th 99.8 3.3E-19 7.1E-24 138.7 14.4 164 21-207 2-169 (170)
23 PRK00454 engB GTP-binding prot 99.8 2.9E-18 6.2E-23 136.6 20.2 171 17-210 22-195 (196)
24 PRK03003 GTP-binding protein D 99.8 1.8E-18 3.9E-23 155.1 20.9 190 18-227 210-400 (472)
25 COG1084 Predicted GTPase [Gene 99.8 3.8E-19 8.2E-24 146.5 14.7 132 11-152 160-295 (346)
26 cd01894 EngA1 EngA1 subfamily. 99.8 7.6E-19 1.6E-23 134.5 15.7 155 23-207 1-156 (157)
27 cd04171 SelB SelB subfamily. 99.8 1.6E-18 3.5E-23 133.7 17.6 160 21-206 2-163 (164)
28 PRK03003 GTP-binding protein D 99.8 1.5E-18 3.2E-23 155.7 19.7 164 17-210 36-200 (472)
29 cd04163 Era Era subfamily. Er 99.8 7.3E-19 1.6E-23 135.6 15.4 164 19-207 3-167 (168)
30 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 5.2E-19 1.1E-23 137.2 14.5 160 20-209 1-166 (168)
31 TIGR02729 Obg_CgtA Obg family 99.8 1.3E-18 2.7E-23 148.6 17.7 167 20-208 158-328 (329)
32 TIGR03598 GTPase_YsxC ribosome 99.8 1.2E-18 2.6E-23 137.0 16.3 126 17-152 16-144 (179)
33 TIGR03594 GTPase_EngA ribosome 99.8 1.3E-18 2.9E-23 154.8 18.5 160 21-210 1-161 (429)
34 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.5E-18 7.5E-23 130.8 17.3 155 20-208 2-156 (157)
35 TIGR03156 GTP_HflX GTP-binding 99.8 3.2E-18 6.9E-23 147.4 18.8 162 18-207 188-350 (351)
36 COG3596 Predicted GTPase [Gene 99.8 1.1E-18 2.3E-23 140.7 14.7 191 16-223 36-236 (296)
37 cd01895 EngA2 EngA2 subfamily. 99.8 3E-18 6.6E-23 133.1 16.9 126 19-152 2-128 (174)
38 PRK12296 obgE GTPase CgtA; Rev 99.8 4.8E-18 1E-22 150.6 19.2 170 20-212 160-343 (500)
39 cd04119 RJL RJL (RabJ-Like) su 99.8 6.1E-18 1.3E-22 130.9 17.2 161 20-208 1-166 (168)
40 cd01866 Rab2 Rab2 subfamily. 99.8 1.2E-17 2.6E-22 129.9 18.6 161 19-209 4-166 (168)
41 cd01865 Rab3 Rab3 subfamily. 99.8 1.6E-17 3.4E-22 128.8 18.6 159 20-209 2-163 (165)
42 PRK00093 GTP-binding protein D 99.8 6.3E-18 1.4E-22 150.7 18.5 122 20-151 2-123 (435)
43 cd01861 Rab6 Rab6 subfamily. 99.8 1.5E-17 3.3E-22 128.1 18.1 157 20-207 1-160 (161)
44 cd01878 HflX HflX subfamily. 99.8 7.2E-18 1.6E-22 135.3 16.8 164 17-207 39-203 (204)
45 cd01867 Rab8_Rab10_Rab13_like 99.8 1.8E-17 3.9E-22 128.7 18.5 160 19-209 3-165 (167)
46 PF00009 GTP_EFTU: Elongation 99.8 1.4E-18 3E-23 137.7 12.1 165 18-209 2-187 (188)
47 cd04154 Arl2 Arl2 subfamily. 99.8 8.5E-18 1.8E-22 131.3 16.1 156 17-205 12-171 (173)
48 PRK09518 bifunctional cytidyla 99.8 2.1E-17 4.5E-22 154.9 21.4 187 18-226 449-638 (712)
49 cd04122 Rab14 Rab14 subfamily. 99.8 2.5E-17 5.5E-22 127.7 18.3 156 20-208 3-163 (166)
50 smart00175 RAB Rab subfamily o 99.8 2.3E-17 4.9E-22 127.4 17.9 160 20-210 1-163 (164)
51 PRK11058 GTPase HflX; Provisio 99.8 1.4E-17 3E-22 146.7 18.6 166 19-211 197-364 (426)
52 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.8E-17 6.1E-22 127.4 17.9 160 19-209 2-164 (166)
53 cd01864 Rab19 Rab19 subfamily. 99.8 1.4E-17 3E-22 129.0 16.1 158 19-206 3-163 (165)
54 COG0370 FeoB Fe2+ transport sy 99.8 2.7E-17 5.9E-22 147.5 19.9 177 19-227 3-181 (653)
55 PRK04213 GTP-binding protein; 99.8 4.7E-17 1E-21 130.2 19.2 165 17-210 7-193 (201)
56 cd00881 GTP_translation_factor 99.8 8.6E-18 1.9E-22 132.7 14.7 161 21-209 1-187 (189)
57 cd01860 Rab5_related Rab5-rela 99.8 3.4E-17 7.5E-22 126.3 17.7 160 20-208 2-162 (163)
58 PRK09518 bifunctional cytidyla 99.8 2E-17 4.4E-22 155.0 19.5 163 18-210 274-437 (712)
59 cd04127 Rab27A Rab27a subfamil 99.8 6.9E-17 1.5E-21 126.9 19.2 163 18-209 3-177 (180)
60 cd04113 Rab4 Rab4 subfamily. 99.8 3.1E-17 6.7E-22 126.5 16.9 156 20-206 1-159 (161)
61 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 3.2E-17 6.9E-22 131.2 17.5 163 20-211 1-170 (201)
62 cd04112 Rab26 Rab26 subfamily. 99.8 5.3E-17 1.2E-21 128.9 18.4 163 20-212 1-166 (191)
63 cd04140 ARHI_like ARHI subfami 99.8 2E-17 4.3E-22 128.2 15.5 160 20-207 2-163 (165)
64 cd04124 RabL2 RabL2 subfamily. 99.8 2.3E-17 4.9E-22 127.4 15.8 155 20-209 1-158 (161)
65 cd01879 FeoB Ferrous iron tran 99.8 3.6E-17 7.8E-22 125.5 16.9 156 24-208 1-156 (158)
66 KOG0084 GTPase Rab1/YPT1, smal 99.8 3.1E-17 6.7E-22 125.6 16.1 171 17-215 7-178 (205)
67 cd01868 Rab11_like Rab11-like. 99.8 6.2E-17 1.3E-21 125.3 18.3 158 19-207 3-163 (165)
68 cd04109 Rab28 Rab28 subfamily. 99.8 5E-17 1.1E-21 131.5 18.5 163 20-210 1-167 (215)
69 cd04158 ARD1 ARD1 subfamily. 99.8 2.1E-17 4.5E-22 128.7 15.5 157 21-211 1-163 (169)
70 cd01850 CDC_Septin CDC/Septin. 99.8 3E-17 6.6E-22 137.1 17.4 154 19-186 4-185 (276)
71 TIGR00450 mnmE_trmE_thdF tRNA 99.8 5.3E-17 1.1E-21 143.7 19.9 124 17-151 201-324 (442)
72 PRK05291 trmE tRNA modificatio 99.8 6.6E-17 1.4E-21 143.8 20.3 158 18-210 214-371 (449)
73 cd04142 RRP22 RRP22 subfamily. 99.8 7.2E-17 1.6E-21 128.8 18.6 174 20-214 1-179 (198)
74 cd01891 TypA_BipA TypA (tyrosi 99.8 1.8E-17 3.9E-22 132.0 15.0 117 19-152 2-132 (194)
75 cd01884 EF_Tu EF-Tu subfamily. 99.8 3E-17 6.5E-22 130.4 16.1 137 19-177 2-152 (195)
76 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 6.2E-17 1.3E-21 126.2 17.6 161 21-211 2-167 (170)
77 cd04104 p47_IIGP_like p47 (47- 99.8 2.6E-17 5.7E-22 131.3 15.7 172 20-211 2-186 (197)
78 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.9E-17 1.1E-21 128.3 17.1 163 19-209 3-170 (183)
79 cd01890 LepA LepA subfamily. 99.8 1.2E-17 2.5E-22 131.1 13.4 158 20-208 1-176 (179)
80 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.6E-17 3.5E-22 128.7 14.1 159 21-205 1-165 (167)
81 cd04120 Rab12 Rab12 subfamily. 99.8 5.3E-17 1.2E-21 129.7 17.3 160 21-210 2-164 (202)
82 cd04157 Arl6 Arl6 subfamily. 99.8 2.7E-17 5.7E-22 126.8 15.1 155 21-205 1-160 (162)
83 cd01876 YihA_EngB The YihA (En 99.8 9.5E-17 2.1E-21 124.0 18.2 163 22-207 2-169 (170)
84 cd00877 Ran Ran (Ras-related n 99.8 4.8E-17 1E-21 126.3 16.3 156 20-210 1-160 (166)
85 cd01881 Obg_like The Obg-like 99.8 8.3E-18 1.8E-22 131.3 12.0 162 24-207 1-175 (176)
86 cd01863 Rab18 Rab18 subfamily. 99.8 6E-17 1.3E-21 124.8 16.7 158 20-206 1-159 (161)
87 cd00154 Rab Rab family. Rab G 99.8 4.3E-17 9.3E-22 124.5 15.8 157 20-205 1-158 (159)
88 cd04138 H_N_K_Ras_like H-Ras/N 99.8 6.4E-17 1.4E-21 124.4 16.8 156 20-207 2-160 (162)
89 cd04101 RabL4 RabL4 (Rab-like4 99.8 6.7E-17 1.4E-21 124.9 16.8 156 20-207 1-162 (164)
90 cd04123 Rab21 Rab21 subfamily. 99.8 7.1E-17 1.5E-21 124.2 16.7 159 20-208 1-161 (162)
91 cd04145 M_R_Ras_like M-Ras/R-R 99.8 9E-17 2E-21 124.1 17.3 159 19-208 2-163 (164)
92 cd04149 Arf6 Arf6 subfamily. 99.8 5.4E-17 1.2E-21 126.3 16.1 156 18-205 8-166 (168)
93 cd04110 Rab35 Rab35 subfamily. 99.8 1.3E-16 2.8E-21 127.5 18.2 161 18-210 5-168 (199)
94 PLN03110 Rab GTPase; Provision 99.8 1.5E-16 3.2E-21 128.8 18.6 162 18-210 11-175 (216)
95 PRK09554 feoB ferrous iron tra 99.8 1.8E-16 3.8E-21 148.5 21.6 164 19-209 3-168 (772)
96 smart00173 RAS Ras subfamily o 99.8 1.1E-16 2.4E-21 123.7 17.1 159 20-209 1-162 (164)
97 PLN00223 ADP-ribosylation fact 99.8 1.3E-16 2.8E-21 125.6 17.7 159 17-209 15-178 (181)
98 cd01889 SelB_euk SelB subfamil 99.8 2.8E-17 6.1E-22 130.6 14.0 167 20-209 1-186 (192)
99 cd04136 Rap_like Rap-like subf 99.8 1E-16 2.2E-21 123.7 16.7 157 20-207 2-161 (163)
100 cd04125 RabA_like RabA-like su 99.7 1.3E-16 2.7E-21 126.4 17.2 160 20-210 1-163 (188)
101 smart00177 ARF ARF-like small 99.7 1.1E-16 2.4E-21 125.4 16.6 159 18-208 12-173 (175)
102 cd04144 Ras2 Ras2 subfamily. 99.7 7.1E-17 1.5E-21 128.1 15.5 161 21-211 1-165 (190)
103 PLN03118 Rab family protein; P 99.7 1.3E-16 2.9E-21 128.6 17.2 164 17-211 12-179 (211)
104 cd04175 Rap1 Rap1 subgroup. T 99.7 1.2E-16 2.5E-21 123.6 16.2 158 20-208 2-162 (164)
105 cd04121 Rab40 Rab40 subfamily. 99.7 3E-16 6.4E-21 124.2 18.7 164 18-213 5-171 (189)
106 cd01893 Miro1 Miro1 subfamily. 99.7 1.4E-16 2.9E-21 123.7 16.4 160 21-208 2-163 (166)
107 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 5.2E-17 1.1E-21 125.9 13.9 159 22-205 2-162 (164)
108 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.6E-16 5.6E-21 122.9 17.9 160 19-210 2-165 (172)
109 cd01862 Rab7 Rab7 subfamily. 99.7 2.6E-16 5.7E-21 122.4 17.8 162 20-210 1-168 (172)
110 cd04106 Rab23_lke Rab23-like s 99.7 4.5E-16 9.8E-21 120.0 18.6 155 21-206 2-160 (162)
111 COG2262 HflX GTPases [General 99.7 1.9E-16 4.2E-21 134.3 17.7 169 16-211 189-358 (411)
112 PTZ00133 ADP-ribosylation fact 99.7 1.5E-16 3.2E-21 125.4 16.1 162 17-210 15-179 (182)
113 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.9E-16 8.4E-21 121.6 18.3 163 19-208 2-168 (170)
114 cd04118 Rab24 Rab24 subfamily. 99.7 1.7E-16 3.8E-21 126.1 16.5 162 20-210 1-167 (193)
115 cd00879 Sar1 Sar1 subfamily. 99.7 1.5E-16 3.2E-21 126.1 15.8 170 15-207 15-189 (190)
116 PRK15467 ethanolamine utilizat 99.7 3.1E-17 6.7E-22 126.3 11.5 145 20-210 2-148 (158)
117 PLN03071 GTP-binding nuclear p 99.7 2.9E-16 6.3E-21 127.3 17.7 162 17-211 11-174 (219)
118 TIGR02528 EutP ethanolamine ut 99.7 5.4E-17 1.2E-21 122.6 12.6 139 21-205 2-141 (142)
119 cd04114 Rab30 Rab30 subfamily. 99.7 3.1E-16 6.8E-21 121.7 16.8 159 18-207 6-167 (169)
120 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.9E-16 4.2E-21 122.0 15.4 153 21-205 2-157 (159)
121 TIGR00487 IF-2 translation ini 99.7 1.5E-16 3.3E-21 145.0 17.0 162 18-206 86-247 (587)
122 cd04132 Rho4_like Rho4-like su 99.7 3.8E-16 8.3E-21 123.4 17.4 163 20-210 1-168 (187)
123 smart00178 SAR Sar1p-like memb 99.7 1.7E-16 3.6E-21 125.3 15.2 164 17-206 15-182 (184)
124 KOG0092 GTPase Rab5/YPT51 and 99.7 5.2E-17 1.1E-21 123.9 11.7 166 18-212 4-170 (200)
125 cd04117 Rab15 Rab15 subfamily. 99.7 2.5E-16 5.4E-21 121.6 15.9 154 21-207 2-160 (161)
126 cd04139 RalA_RalB RalA/RalB su 99.7 4.2E-16 9.1E-21 120.2 17.1 159 20-209 1-162 (164)
127 PF10662 PduV-EutP: Ethanolami 99.7 2.4E-17 5.1E-22 122.4 9.5 141 20-205 2-142 (143)
128 cd04111 Rab39 Rab39 subfamily. 99.7 6.6E-16 1.4E-20 124.5 18.7 164 19-211 2-168 (211)
129 cd04128 Spg1 Spg1p. Spg1p (se 99.7 3.9E-16 8.5E-21 123.0 16.8 161 20-210 1-167 (182)
130 cd00880 Era_like Era (E. coli 99.7 3.3E-16 7.2E-21 119.4 16.0 119 24-152 1-119 (163)
131 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.4E-16 3E-21 122.6 13.8 156 21-206 1-159 (160)
132 cd01888 eIF2_gamma eIF2-gamma 99.7 2E-16 4.3E-21 126.8 14.9 163 20-210 1-200 (203)
133 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 3.3E-16 7.2E-21 122.5 15.9 154 19-205 15-172 (174)
134 cd04161 Arl2l1_Arl13_like Arl2 99.7 2.3E-16 4.9E-21 122.6 14.8 162 21-205 1-165 (167)
135 PTZ00369 Ras-like protein; Pro 99.7 5E-16 1.1E-20 123.1 16.9 162 18-210 4-168 (189)
136 cd04116 Rab9 Rab9 subfamily. 99.7 5.6E-16 1.2E-20 120.5 16.8 160 18-206 4-168 (170)
137 PF00735 Septin: Septin; Inte 99.7 9.7E-17 2.1E-21 134.0 13.0 155 19-187 4-185 (281)
138 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.8E-16 6E-21 120.8 14.6 152 21-205 1-156 (158)
139 cd04176 Rap2 Rap2 subgroup. T 99.7 4.7E-16 1E-20 120.1 15.5 157 20-207 2-161 (163)
140 CHL00071 tufA elongation facto 99.7 3.3E-16 7.1E-21 138.1 16.4 139 16-177 9-162 (409)
141 cd04126 Rab20 Rab20 subfamily. 99.7 7.5E-16 1.6E-20 124.5 17.1 167 20-209 1-190 (220)
142 PLN03108 Rab family protein; P 99.7 2E-15 4.2E-20 121.7 19.1 160 18-208 5-167 (210)
143 cd04148 RGK RGK subfamily. Th 99.7 7.2E-16 1.6E-20 125.2 16.5 161 20-210 1-164 (221)
144 cd01896 DRG The developmentall 99.7 1E-15 2.2E-20 125.1 17.5 88 21-115 2-89 (233)
145 CHL00189 infB translation init 99.7 3.1E-16 6.8E-21 145.1 16.1 165 17-208 242-409 (742)
146 cd04151 Arl1 Arl1 subfamily. 99.7 3.7E-16 8.1E-21 120.1 14.0 113 21-152 1-115 (158)
147 cd04146 RERG_RasL11_like RERG/ 99.7 2.7E-16 5.9E-21 121.8 13.3 160 21-208 1-163 (165)
148 cd00157 Rho Rho (Ras homology) 99.7 4.7E-16 1E-20 120.9 14.5 163 20-206 1-170 (171)
149 PRK05306 infB translation init 99.7 2.9E-16 6.2E-21 146.5 15.5 162 17-206 288-449 (787)
150 TIGR00475 selB selenocysteine- 99.7 7.5E-16 1.6E-20 140.9 17.9 164 21-211 2-168 (581)
151 KOG1423 Ras-like GTPase ERA [C 99.7 3.6E-16 7.8E-21 127.4 14.0 130 17-152 70-200 (379)
152 cd04134 Rho3 Rho3 subfamily. 99.7 8.9E-16 1.9E-20 121.7 16.0 166 20-210 1-175 (189)
153 smart00174 RHO Rho (Ras homolo 99.7 9.3E-16 2E-20 119.7 15.9 163 22-208 1-171 (174)
154 cd01874 Cdc42 Cdc42 subfamily. 99.7 1.4E-15 3E-20 119.1 16.9 161 20-206 2-172 (175)
155 cd04166 CysN_ATPS CysN_ATPS su 99.7 7.7E-16 1.7E-20 123.9 15.7 116 21-152 1-145 (208)
156 KOG0080 GTPase Rab18, small G 99.7 5.2E-16 1.1E-20 114.8 13.2 121 18-151 10-131 (209)
157 cd04133 Rop_like Rop subfamily 99.7 1.5E-15 3.2E-20 118.9 16.6 164 20-208 2-172 (176)
158 cd04155 Arl3 Arl3 subfamily. 99.7 5.6E-16 1.2E-20 120.8 14.2 160 17-206 12-172 (173)
159 cd00876 Ras Ras family. The R 99.7 1.6E-15 3.4E-20 116.4 16.4 155 21-206 1-158 (160)
160 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 2.6E-15 5.7E-20 122.1 18.3 168 18-210 12-189 (232)
161 KOG1489 Predicted GTP-binding 99.7 2.9E-16 6.2E-21 128.6 12.6 163 20-206 197-364 (366)
162 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 9.8E-16 2.1E-20 117.1 14.5 164 18-211 21-187 (221)
163 cd04159 Arl10_like Arl10-like 99.7 3.6E-16 7.8E-21 119.5 12.5 113 22-152 2-116 (159)
164 PRK10512 selenocysteinyl-tRNA- 99.7 1E-15 2.2E-20 140.5 17.2 164 21-210 2-167 (614)
165 COG0536 Obg Predicted GTPase [ 99.7 6.2E-16 1.3E-20 128.1 14.1 170 21-211 161-335 (369)
166 cd04102 RabL3 RabL3 (Rab-like3 99.7 3.6E-15 7.8E-20 119.0 18.1 173 21-209 2-197 (202)
167 cd04147 Ras_dva Ras-dva subfam 99.7 1.5E-15 3.2E-20 121.4 15.8 159 21-209 1-163 (198)
168 cd01892 Miro2 Miro2 subfamily. 99.7 2.3E-15 4.9E-20 117.2 16.5 161 18-209 3-166 (169)
169 cd01875 RhoG RhoG subfamily. 99.7 3.4E-15 7.3E-20 118.6 17.6 167 19-210 3-178 (191)
170 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 2.8E-15 6.1E-20 118.0 16.7 165 18-207 4-178 (182)
171 PRK12317 elongation factor 1-a 99.7 4.1E-16 8.9E-21 138.5 13.3 120 16-151 3-153 (425)
172 cd04177 RSR1 RSR1 subgroup. R 99.7 2.8E-15 6.1E-20 116.4 16.2 158 20-207 2-162 (168)
173 cd04137 RheB Rheb (Ras Homolog 99.7 3.4E-15 7.3E-20 117.3 16.8 161 20-211 2-165 (180)
174 cd04168 TetM_like Tet(M)-like 99.7 7.8E-16 1.7E-20 126.0 13.5 137 21-185 1-153 (237)
175 cd04131 Rnd Rnd subfamily. Th 99.7 3.2E-15 6.9E-20 117.3 16.5 163 20-207 2-174 (178)
176 PRK12735 elongation factor Tu; 99.7 1.8E-15 3.9E-20 132.9 16.5 171 16-209 9-203 (396)
177 cd01871 Rac1_like Rac1-like su 99.7 3.8E-15 8.3E-20 116.5 16.6 163 20-206 2-172 (174)
178 cd04143 Rhes_like Rhes_like su 99.7 2E-15 4.2E-20 124.4 15.5 160 20-208 1-170 (247)
179 KOG1191 Mitochondrial GTPase [ 99.7 1.6E-15 3.5E-20 130.8 15.4 178 16-211 265-452 (531)
180 PRK12736 elongation factor Tu; 99.7 3.2E-15 6.9E-20 131.2 17.6 171 16-209 9-201 (394)
181 cd01886 EF-G Elongation factor 99.7 1.2E-15 2.6E-20 127.1 14.0 115 21-152 1-131 (270)
182 TIGR00231 small_GTP small GTP- 99.7 4.8E-15 1E-19 112.9 16.2 154 20-205 2-160 (161)
183 TIGR00491 aIF-2 translation in 99.7 3.4E-15 7.3E-20 136.0 17.5 116 18-151 3-135 (590)
184 PLN03127 Elongation factor Tu; 99.7 2E-15 4.3E-20 134.0 15.3 173 14-209 56-252 (447)
185 cd04135 Tc10 TC10 subfamily. 99.7 4.8E-15 1E-19 115.7 15.8 164 20-207 1-172 (174)
186 COG5019 CDC3 Septin family pro 99.7 2.6E-15 5.6E-20 125.8 14.5 135 18-161 22-184 (373)
187 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.3E-14 2.8E-19 117.4 18.2 165 20-208 2-175 (222)
188 cd01870 RhoA_like RhoA-like su 99.7 1.2E-14 2.7E-19 113.4 17.1 163 20-207 2-173 (175)
189 cd04169 RF3 RF3 subfamily. Pe 99.7 4.4E-15 9.5E-20 123.5 15.2 117 19-152 2-138 (267)
190 PRK09866 hypothetical protein; 99.7 3E-14 6.6E-19 127.8 21.2 75 69-152 230-304 (741)
191 smart00176 RAN Ran (Ras-relate 99.6 9.4E-15 2E-19 116.6 15.9 151 25-210 1-155 (200)
192 KOG0087 GTPase Rab11/YPT3, sma 99.6 5.6E-15 1.2E-19 114.4 13.7 168 17-211 12-182 (222)
193 PRK00049 elongation factor Tu; 99.6 1E-14 2.3E-19 128.0 16.9 170 17-209 10-203 (396)
194 TIGR00485 EF-Tu translation el 99.6 7E-15 1.5E-19 129.2 15.8 172 16-209 9-201 (394)
195 KOG0078 GTP-binding protein SE 99.6 1.3E-14 2.8E-19 112.8 15.3 164 15-209 8-174 (207)
196 KOG2655 Septin family protein 99.6 3.3E-15 7.2E-20 126.1 13.0 156 19-187 21-201 (366)
197 PF00025 Arf: ADP-ribosylation 99.6 2.4E-15 5.3E-20 117.7 11.4 160 17-207 12-174 (175)
198 cd04165 GTPBP1_like GTPBP1-lik 99.6 1E-14 2.2E-19 118.3 15.0 117 21-152 1-153 (224)
199 PF00071 Ras: Ras family; Int 99.6 9.3E-15 2E-19 112.6 13.8 157 21-208 1-160 (162)
200 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.8E-14 3.9E-19 112.5 15.2 162 20-205 1-170 (173)
201 PTZ00132 GTP-binding nuclear p 99.6 4.9E-14 1.1E-18 114.0 18.0 162 15-211 5-170 (215)
202 TIGR00437 feoB ferrous iron tr 99.6 4.4E-14 9.5E-19 129.5 19.6 154 26-208 1-154 (591)
203 cd04170 EF-G_bact Elongation f 99.6 8.9E-15 1.9E-19 122.2 13.8 115 21-152 1-131 (268)
204 cd00882 Ras_like_GTPase Ras-li 99.6 1.7E-14 3.6E-19 108.7 13.8 153 24-205 1-156 (157)
205 KOG0394 Ras-related GTPase [Ge 99.6 1.8E-14 4E-19 109.1 13.7 167 18-213 8-182 (210)
206 TIGR01393 lepA GTP-binding pro 99.6 1.3E-14 2.8E-19 133.0 15.2 162 19-211 3-182 (595)
207 smart00053 DYNc Dynamin, GTPas 99.6 2E-14 4.4E-19 116.9 14.7 128 18-152 25-207 (240)
208 KOG1547 Septin CDC10 and relat 99.6 2E-14 4.3E-19 113.5 13.7 149 19-181 46-221 (336)
209 cd04129 Rho2 Rho2 subfamily. 99.6 3.9E-14 8.6E-19 112.0 15.6 165 20-209 2-173 (187)
210 cd01873 RhoBTB RhoBTB subfamil 99.6 7.2E-14 1.6E-18 111.2 16.9 166 19-206 2-193 (195)
211 KOG0095 GTPase Rab30, small G 99.6 2.5E-14 5.5E-19 104.6 12.8 161 19-208 7-168 (213)
212 PRK04004 translation initiatio 99.6 6.8E-14 1.5E-18 127.9 18.7 116 17-150 4-136 (586)
213 KOG0098 GTPase Rab2, small G p 99.6 5E-14 1.1E-18 107.0 14.8 162 17-207 4-166 (216)
214 TIGR00483 EF-1_alpha translati 99.6 1.6E-14 3.5E-19 128.2 14.3 121 16-152 4-156 (426)
215 PLN03126 Elongation factor Tu; 99.6 4.2E-14 9E-19 126.3 16.8 140 16-177 78-231 (478)
216 PF00350 Dynamin_N: Dynamin fa 99.6 4.4E-15 9.6E-20 115.3 9.4 113 22-147 1-168 (168)
217 COG0532 InfB Translation initi 99.6 4E-14 8.6E-19 124.0 15.5 163 18-207 4-168 (509)
218 cd04105 SR_beta Signal recogni 99.6 2.6E-14 5.6E-19 114.5 13.3 116 20-152 1-124 (203)
219 PF08477 Miro: Miro-like prote 99.6 2.2E-15 4.8E-20 110.2 6.3 116 21-148 1-119 (119)
220 PF05049 IIGP: Interferon-indu 99.6 4E-15 8.6E-20 127.3 8.7 172 17-213 33-222 (376)
221 PRK05433 GTP-binding protein L 99.6 5.3E-14 1.1E-18 129.1 16.6 164 17-211 5-186 (600)
222 cd01883 EF1_alpha Eukaryotic e 99.6 1.8E-14 3.9E-19 116.8 12.0 115 21-151 1-151 (219)
223 PRK04000 translation initiatio 99.6 3.9E-14 8.5E-19 124.9 15.0 169 16-210 6-202 (411)
224 PRK05124 cysN sulfate adenylyl 99.6 3.4E-14 7.3E-19 127.2 14.7 128 9-152 17-175 (474)
225 TIGR03680 eif2g_arch translati 99.6 4E-14 8.7E-19 124.8 14.6 166 18-209 3-196 (406)
226 cd04103 Centaurin_gamma Centau 99.6 4.6E-14 9.9E-19 108.6 13.2 153 20-206 1-156 (158)
227 TIGR01394 TypA_BipA GTP-bindin 99.6 4.9E-14 1.1E-18 128.9 15.5 116 20-152 2-131 (594)
228 KOG1490 GTP-binding protein CR 99.6 1.3E-14 2.8E-19 125.4 11.0 133 12-152 161-296 (620)
229 PRK00007 elongation factor G; 99.6 4.2E-14 9.2E-19 132.3 15.5 121 15-152 6-142 (693)
230 COG2229 Predicted GTPase [Gene 99.6 1.9E-13 4.1E-18 104.0 16.0 157 19-205 10-174 (187)
231 TIGR02034 CysN sulfate adenyly 99.6 3.6E-14 7.8E-19 125.0 13.7 117 20-152 1-148 (406)
232 PRK10218 GTP-binding protein; 99.6 7E-14 1.5E-18 127.8 15.8 118 18-152 4-135 (607)
233 PRK05506 bifunctional sulfate 99.6 3E-14 6.4E-19 132.3 13.6 122 15-152 20-172 (632)
234 TIGR00484 EF-G translation elo 99.6 7.2E-14 1.6E-18 130.9 15.0 121 15-152 6-142 (689)
235 KOG0073 GTP-binding ADP-ribosy 99.6 3.9E-13 8.4E-18 100.0 15.6 159 18-206 15-175 (185)
236 KOG0079 GTP-binding protein H- 99.5 9.2E-14 2E-18 101.5 11.3 160 20-210 9-170 (198)
237 PLN00023 GTP-binding protein; 99.5 1.1E-13 2.4E-18 116.3 13.2 124 18-152 20-166 (334)
238 KOG1145 Mitochondrial translat 99.5 2.9E-13 6.3E-18 118.2 15.5 161 18-206 152-313 (683)
239 cd01885 EF2 EF2 (for archaea a 99.5 8.1E-14 1.8E-18 112.7 11.2 115 20-150 1-138 (222)
240 PTZ00141 elongation factor 1- 99.5 1.4E-13 3.1E-18 122.3 13.8 142 16-178 4-183 (446)
241 TIGR02836 spore_IV_A stage IV 99.5 2.9E-13 6.3E-18 115.8 14.9 169 16-204 14-232 (492)
242 PRK12739 elongation factor G; 99.5 1.9E-13 4.2E-18 127.9 15.1 119 17-152 6-140 (691)
243 KOG0093 GTPase Rab3, small G p 99.5 3.5E-13 7.6E-18 98.4 11.9 161 19-209 21-183 (193)
244 COG4917 EutP Ethanolamine util 99.5 3.7E-14 8.1E-19 100.8 6.6 142 20-206 2-143 (148)
245 COG1163 DRG Predicted GTPase [ 99.5 1.7E-13 3.7E-18 112.9 11.4 90 18-114 62-151 (365)
246 cd04167 Snu114p Snu114p subfam 99.5 1.3E-13 2.7E-18 111.4 10.6 115 20-150 1-136 (213)
247 PRK00741 prfC peptide chain re 99.5 4.5E-13 9.8E-18 121.1 14.8 119 17-152 8-146 (526)
248 cd01899 Ygr210 Ygr210 subfamil 99.5 1.7E-12 3.6E-17 110.3 16.9 87 22-114 1-110 (318)
249 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 2.2E-13 4.7E-18 110.2 10.9 170 21-205 1-172 (232)
250 COG1100 GTPase SAR1 and relate 99.5 3.7E-12 8E-17 103.1 17.5 119 20-152 6-126 (219)
251 cd01882 BMS1 Bms1. Bms1 is an 99.5 2.6E-12 5.7E-17 104.4 16.4 112 16-152 36-148 (225)
252 PRK09602 translation-associate 99.5 6.5E-12 1.4E-16 109.8 19.9 89 20-114 2-113 (396)
253 TIGR00503 prfC peptide chain r 99.5 7.2E-13 1.6E-17 119.8 14.3 119 17-152 9-147 (527)
254 PRK13351 elongation factor G; 99.5 7E-13 1.5E-17 124.4 14.3 119 17-152 6-140 (687)
255 PTZ00327 eukaryotic translatio 99.5 9.2E-13 2E-17 116.9 13.8 168 17-210 32-234 (460)
256 PF09439 SRPRB: Signal recogni 99.5 8.4E-14 1.8E-18 108.0 6.0 120 19-152 3-127 (181)
257 KOG0088 GTPase Rab21, small G 99.4 9.6E-13 2.1E-17 97.3 9.5 161 18-210 12-176 (218)
258 KOG0462 Elongation factor-type 99.4 2.2E-12 4.7E-17 112.8 13.2 168 17-214 58-240 (650)
259 KOG0091 GTPase Rab39, small G 99.4 1E-11 2.3E-16 92.4 13.0 164 18-207 7-171 (213)
260 PLN00043 elongation factor 1-a 99.4 8.1E-12 1.8E-16 111.1 14.4 119 16-150 4-158 (447)
261 cd01900 YchF YchF subfamily. 99.4 2.8E-12 6E-17 106.5 10.2 87 22-114 1-103 (274)
262 COG5256 TEF1 Translation elong 99.4 1.7E-11 3.7E-16 104.5 14.6 152 16-188 4-194 (428)
263 KOG0086 GTPase Rab4, small G p 99.4 3.1E-11 6.8E-16 88.9 14.0 154 17-201 7-163 (214)
264 PTZ00258 GTP-binding protein; 99.4 5.3E-12 1.1E-16 109.4 11.4 92 17-114 19-126 (390)
265 PTZ00416 elongation factor 2; 99.4 3.6E-12 7.8E-17 121.4 10.6 119 16-150 16-157 (836)
266 PRK09601 GTP-binding protein Y 99.4 7.5E-12 1.6E-16 107.2 11.4 89 20-114 3-107 (364)
267 KOG1954 Endocytosis/signaling 99.3 3.8E-12 8.2E-17 106.6 8.8 131 17-152 56-226 (532)
268 KOG0395 Ras-related GTPase [Ge 99.3 4.3E-11 9.3E-16 95.0 13.9 163 19-210 3-166 (196)
269 PRK13768 GTPase; Provisional 99.3 1.3E-11 2.9E-16 102.0 11.4 131 70-211 98-249 (253)
270 TIGR00490 aEF-2 translation el 99.3 5.6E-12 1.2E-16 118.5 10.0 118 17-151 17-152 (720)
271 KOG1707 Predicted Ras related/ 99.3 5.1E-12 1.1E-16 111.4 9.0 211 16-254 6-222 (625)
272 PLN00116 translation elongatio 99.3 1.8E-11 3.9E-16 116.9 11.9 119 16-150 16-163 (843)
273 KOG0070 GTP-binding ADP-ribosy 99.3 2.3E-11 5.1E-16 92.7 10.1 163 17-210 15-179 (181)
274 KOG1532 GTPase XAB1, interacts 99.3 1.5E-10 3.2E-15 93.6 13.9 25 17-41 17-41 (366)
275 PRK12740 elongation factor G; 99.3 5.6E-11 1.2E-15 111.4 13.3 111 25-152 1-127 (668)
276 KOG0448 Mitofusin 1 GTPase, in 99.3 1.7E-10 3.7E-15 103.6 15.4 118 19-152 109-276 (749)
277 COG3276 SelB Selenocysteine-sp 99.3 9.8E-11 2.1E-15 100.6 13.4 158 21-208 2-161 (447)
278 COG0480 FusA Translation elong 99.3 1.2E-10 2.6E-15 107.6 14.6 121 16-152 7-143 (697)
279 KOG0075 GTP-binding ADP-ribosy 99.3 4.2E-11 9.1E-16 87.6 8.9 152 19-208 20-181 (186)
280 KOG2486 Predicted GTPase [Gene 99.3 5.3E-11 1.1E-15 96.4 10.1 126 17-152 134-263 (320)
281 cd01851 GBP Guanylate-binding 99.2 7.8E-10 1.7E-14 89.8 15.3 96 16-114 4-102 (224)
282 PRK07560 elongation factor EF- 99.2 8.8E-11 1.9E-15 110.8 10.9 119 17-151 18-153 (731)
283 PRK09435 membrane ATPase/prote 99.2 2.7E-09 5.8E-14 91.0 18.7 106 68-210 148-261 (332)
284 COG1217 TypA Predicted membran 99.2 2.1E-10 4.5E-15 98.9 12.0 178 18-213 4-199 (603)
285 PRK14845 translation initiatio 99.2 6.4E-10 1.4E-14 106.7 16.2 103 31-151 473-592 (1049)
286 cd01858 NGP_1 NGP-1. Autoanti 99.2 5.5E-11 1.2E-15 91.3 7.2 57 18-79 101-157 (157)
287 KOG0410 Predicted GTP binding 99.2 1.5E-10 3.4E-15 95.6 9.8 129 17-151 176-308 (410)
288 KOG0081 GTPase Rab27, small G 99.2 8.2E-11 1.8E-15 87.3 6.8 166 20-208 10-184 (219)
289 TIGR01425 SRP54_euk signal rec 99.2 1.7E-08 3.6E-13 88.6 21.7 123 18-152 99-254 (429)
290 KOG0090 Signal recognition par 99.1 4.4E-10 9.6E-15 87.7 10.3 119 19-152 38-160 (238)
291 cd04178 Nucleostemin_like Nucl 99.1 1.5E-10 3.3E-15 90.0 6.8 56 19-79 117-172 (172)
292 COG0050 TufB GTPases - transla 99.1 9.7E-10 2.1E-14 89.8 11.4 176 16-213 9-205 (394)
293 KOG0097 GTPase Rab14, small G 99.1 5.2E-09 1.1E-13 76.2 14.0 153 19-200 11-164 (215)
294 PTZ00099 rab6; Provisional 99.1 2.5E-09 5.3E-14 83.7 13.0 114 69-210 29-143 (176)
295 COG2895 CysN GTPases - Sulfate 99.1 2.7E-09 5.8E-14 89.3 13.1 142 16-178 3-175 (431)
296 KOG0074 GTP-binding ADP-ribosy 99.1 4.4E-10 9.5E-15 81.9 7.3 128 13-160 11-140 (185)
297 KOG1144 Translation initiation 99.1 6.3E-10 1.4E-14 100.5 9.9 116 18-151 474-606 (1064)
298 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 3.1E-10 6.8E-15 85.5 6.8 62 14-80 78-139 (141)
299 KOG0461 Selenocysteine-specifi 99.1 4.3E-09 9.4E-14 87.8 13.2 174 19-211 7-195 (522)
300 COG0481 LepA Membrane GTPase L 99.1 1.3E-09 2.8E-14 94.3 10.5 168 17-214 7-191 (603)
301 KOG0071 GTP-binding ADP-ribosy 99.1 6.1E-09 1.3E-13 75.9 12.3 158 18-208 16-177 (180)
302 PF03193 DUF258: Protein of un 99.0 1.4E-10 3E-15 88.3 3.7 61 19-83 35-101 (161)
303 cd01855 YqeH YqeH. YqeH is an 99.0 3.1E-10 6.8E-15 90.0 5.8 57 19-79 127-190 (190)
304 KOG4252 GTP-binding protein [S 99.0 2.1E-10 4.6E-15 86.8 4.1 118 18-152 19-139 (246)
305 cd01849 YlqF_related_GTPase Yl 99.0 6.5E-10 1.4E-14 85.2 6.8 57 18-79 99-155 (155)
306 PRK09563 rbgA GTPase YlqF; Rev 99.0 1.4E-09 3.1E-14 91.7 9.3 65 17-86 119-183 (287)
307 KOG1673 Ras GTPases [General f 99.0 1.1E-08 2.5E-13 75.7 11.7 167 16-206 17-183 (205)
308 KOG0393 Ras-related small GTPa 99.0 2.7E-09 5.8E-14 83.5 8.8 163 19-205 4-175 (198)
309 KOG0083 GTPase Rab26/Rab37, sm 99.0 1.4E-09 3E-14 78.5 6.5 159 23-210 1-161 (192)
310 KOG0076 GTP-binding ADP-ribosy 99.0 2.4E-09 5.1E-14 80.8 7.6 168 17-211 15-189 (197)
311 KOG3883 Ras family small GTPas 99.0 1.5E-08 3.2E-13 74.9 11.4 123 17-152 7-133 (198)
312 KOG0458 Elongation factor 1 al 99.0 1.9E-08 4.1E-13 89.2 14.1 141 17-178 175-352 (603)
313 TIGR03597 GTPase_YqeH ribosome 99.0 4.5E-10 9.7E-15 97.6 4.0 122 20-151 155-280 (360)
314 KOG3886 GTP-binding protein [S 99.0 2.7E-09 5.9E-14 84.3 7.8 127 18-152 3-131 (295)
315 TIGR03596 GTPase_YlqF ribosome 99.0 3.7E-09 8E-14 88.7 9.0 62 18-84 117-178 (276)
316 cd01856 YlqF YlqF. Proteins o 98.9 2.6E-09 5.5E-14 83.3 7.4 58 18-80 114-171 (171)
317 TIGR00750 lao LAO/AO transport 98.9 5.8E-08 1.3E-12 82.4 15.7 25 17-41 32-56 (300)
318 PRK12288 GTPase RsgA; Reviewed 98.9 2.2E-09 4.7E-14 92.4 6.6 59 20-82 206-270 (347)
319 COG5192 BMS1 GTP-binding prote 98.9 9.8E-09 2.1E-13 90.7 10.4 118 16-159 66-184 (1077)
320 KOG3859 Septins (P-loop GTPase 98.9 6.1E-09 1.3E-13 84.5 8.4 134 19-160 42-197 (406)
321 COG0012 Predicted GTPase, prob 98.9 5.1E-09 1.1E-13 88.9 7.3 89 20-114 3-108 (372)
322 COG1162 Predicted GTPases [Gen 98.9 7.3E-09 1.6E-13 86.0 8.1 60 19-82 164-229 (301)
323 PF00448 SRP54: SRP54-type pro 98.9 2E-08 4.4E-13 79.8 10.3 94 69-187 84-177 (196)
324 PRK12289 GTPase RsgA; Reviewed 98.9 3.4E-09 7.3E-14 91.3 6.1 59 20-82 173-237 (352)
325 TIGR03348 VI_IcmF type VI secr 98.8 1.6E-08 3.4E-13 100.0 10.6 131 20-162 112-264 (1169)
326 COG1161 Predicted GTPases [Gen 98.8 8.2E-09 1.8E-13 88.2 7.5 61 19-84 132-192 (322)
327 COG5257 GCD11 Translation init 98.8 2.3E-08 5.1E-13 82.8 9.8 166 17-213 8-206 (415)
328 KOG1486 GTP-binding protein DR 98.8 5.5E-09 1.2E-13 83.7 5.9 90 18-114 61-150 (364)
329 COG4108 PrfC Peptide chain rel 98.8 5.7E-08 1.2E-12 83.6 12.3 120 17-153 10-149 (528)
330 KOG0447 Dynamin-like GTP bindi 98.8 2.7E-07 5.8E-12 81.5 16.6 133 17-152 306-494 (980)
331 TIGR00092 GTP-binding protein 98.8 1.6E-08 3.5E-13 86.9 8.8 90 20-114 3-108 (368)
332 PF03029 ATP_bind_1: Conserved 98.8 1.7E-09 3.7E-14 88.5 2.5 77 70-151 92-170 (238)
333 TIGR00157 ribosome small subun 98.8 7.2E-09 1.6E-13 85.3 5.9 59 20-83 121-185 (245)
334 KOG0072 GTP-binding ADP-ribosy 98.8 1.4E-08 3E-13 74.4 6.4 162 18-210 17-180 (182)
335 TIGR00064 ftsY signal recognit 98.8 3.7E-07 8E-12 76.3 15.0 76 67-152 153-232 (272)
336 cd01859 MJ1464 MJ1464. This f 98.8 2.6E-08 5.5E-13 76.4 7.4 57 18-79 100-156 (156)
337 PRK10416 signal recognition pa 98.8 1.1E-06 2.5E-11 74.9 17.9 147 17-186 112-295 (318)
338 KOG0468 U5 snRNP-specific prot 98.8 8.7E-08 1.9E-12 86.2 11.3 119 16-150 125-262 (971)
339 PRK00098 GTPase RsgA; Reviewed 98.7 4.7E-08 1E-12 82.9 8.9 59 19-81 164-228 (298)
340 KOG0460 Mitochondrial translat 98.7 1E-07 2.2E-12 79.6 10.5 176 16-213 51-249 (449)
341 TIGR00073 hypB hydrogenase acc 98.7 7.1E-08 1.5E-12 77.5 9.4 26 17-42 20-45 (207)
342 KOG0077 Vesicle coat complex C 98.7 1.6E-07 3.4E-12 70.6 10.3 116 18-152 19-136 (193)
343 KOG1491 Predicted GTP-binding 98.7 3.4E-08 7.3E-13 82.4 7.4 90 18-113 19-124 (391)
344 PF03308 ArgK: ArgK protein; 98.7 1.1E-07 2.4E-12 77.2 10.3 104 68-210 121-231 (266)
345 PRK11889 flhF flagellar biosyn 98.7 1.5E-07 3.3E-12 81.3 11.6 146 18-188 240-415 (436)
346 PRK14974 cell division protein 98.7 1.3E-07 2.7E-12 81.0 11.1 73 68-152 222-294 (336)
347 KOG1424 Predicted GTP-binding 98.7 2.5E-08 5.5E-13 87.2 6.8 62 19-85 314-375 (562)
348 PRK13796 GTPase YqeH; Provisio 98.7 2.1E-08 4.6E-13 87.3 6.3 59 19-81 160-222 (365)
349 COG1419 FlhF Flagellar GTP-bin 98.7 2.1E-07 4.5E-12 80.2 11.5 148 18-190 202-378 (407)
350 COG1703 ArgK Putative periplas 98.7 4.7E-07 1E-11 74.7 12.9 110 68-211 143-256 (323)
351 cd01854 YjeQ_engC YjeQ/EngC. 98.7 7.4E-08 1.6E-12 81.2 8.6 58 20-81 162-225 (287)
352 PRK00771 signal recognition pa 98.7 1.1E-06 2.4E-11 77.9 16.1 145 17-186 93-268 (437)
353 KOG0465 Mitochondrial elongati 98.7 6.1E-08 1.3E-12 86.4 7.0 183 17-228 37-236 (721)
354 KOG0467 Translation elongation 98.6 1.1E-07 2.3E-12 86.7 8.3 121 13-150 3-137 (887)
355 PRK14722 flhF flagellar biosyn 98.6 7E-07 1.5E-11 77.3 12.4 151 19-188 137-319 (374)
356 COG3523 IcmF Type VI protein s 98.6 3.5E-07 7.5E-12 88.7 11.2 128 23-162 129-277 (1188)
357 PRK14721 flhF flagellar biosyn 98.6 3.8E-07 8.3E-12 80.1 10.5 145 18-187 190-363 (420)
358 PRK12727 flagellar biosynthesi 98.6 1.9E-06 4E-11 77.3 14.8 175 18-219 349-553 (559)
359 PRK10867 signal recognition pa 98.6 3.4E-06 7.4E-11 74.6 16.3 94 68-186 183-276 (433)
360 cd00066 G-alpha G protein alph 98.6 1.5E-06 3.2E-11 74.4 13.6 75 66-151 158-242 (317)
361 PRK12724 flagellar biosynthesi 98.6 1.9E-06 4.1E-11 75.3 13.6 147 19-188 223-397 (432)
362 PRK14723 flhF flagellar biosyn 98.6 1.3E-06 2.9E-11 81.5 13.2 147 19-188 185-361 (767)
363 PRK12726 flagellar biosynthesi 98.5 8.3E-07 1.8E-11 76.5 10.9 145 18-187 205-379 (407)
364 PRK05703 flhF flagellar biosyn 98.5 6.7E-07 1.4E-11 79.3 9.8 145 19-187 221-394 (424)
365 KOG0464 Elongation factor G [T 98.5 1.4E-07 3E-12 80.8 5.1 140 19-186 37-192 (753)
366 smart00275 G_alpha G protein a 98.5 3.2E-06 6.9E-11 73.0 13.5 75 66-151 181-265 (342)
367 cd03112 CobW_like The function 98.5 9.6E-07 2.1E-11 67.8 9.1 23 20-42 1-23 (158)
368 TIGR00101 ureG urease accessor 98.5 1.2E-06 2.7E-11 69.8 9.6 24 19-42 1-24 (199)
369 TIGR00959 ffh signal recogniti 98.5 1.4E-05 3E-10 70.7 16.5 94 68-186 182-275 (428)
370 PRK12723 flagellar biosynthesi 98.4 4.9E-06 1.1E-10 72.7 12.4 145 18-186 173-348 (388)
371 PRK06995 flhF flagellar biosyn 98.4 4.9E-06 1.1E-10 74.4 12.4 145 19-188 256-429 (484)
372 PRK10463 hydrogenase nickel in 98.4 1.3E-06 2.9E-11 72.9 8.1 26 17-42 102-127 (290)
373 KOG2485 Conserved ATP/GTP bind 98.4 1.3E-06 2.8E-11 72.4 7.2 67 17-84 141-211 (335)
374 PRK06731 flhF flagellar biosyn 98.3 5.4E-06 1.2E-10 68.9 10.7 146 18-188 74-249 (270)
375 COG0541 Ffh Signal recognition 98.3 2E-05 4.4E-10 68.4 14.1 125 16-152 97-254 (451)
376 KOG0096 GTPase Ran/TC4/GSP1 (n 98.3 2.7E-06 5.8E-11 65.5 7.3 118 17-152 8-129 (216)
377 KOG0082 G-protein alpha subuni 98.3 2.5E-05 5.4E-10 66.7 13.1 76 66-152 192-277 (354)
378 KOG1487 GTP-binding protein DR 98.3 1E-06 2.2E-11 71.1 4.2 122 19-149 59-181 (358)
379 KOG2484 GTPase [General functi 98.2 1.1E-06 2.4E-11 75.0 3.6 63 17-84 250-312 (435)
380 cd01859 MJ1464 MJ1464. This f 98.2 1.1E-05 2.3E-10 61.8 8.2 88 102-211 11-98 (156)
381 COG5258 GTPBP1 GTPase [General 98.2 3.2E-05 6.9E-10 66.0 11.5 122 16-152 114-270 (527)
382 cd03115 SRP The signal recogni 98.2 6.3E-05 1.4E-09 58.5 12.7 73 68-152 82-154 (173)
383 KOG2423 Nucleolar GTPase [Gene 98.1 1.4E-06 3.1E-11 74.3 2.8 63 16-83 304-366 (572)
384 KOG1143 Predicted translation 98.1 5.5E-06 1.2E-10 70.3 6.3 125 14-152 162-318 (591)
385 KOG4423 GTP-binding protein-li 98.1 2.1E-07 4.6E-12 71.2 -2.0 163 20-213 26-198 (229)
386 COG0552 FtsY Signal recognitio 98.1 1.7E-05 3.7E-10 66.7 9.0 147 17-186 137-320 (340)
387 KOG1534 Putative transcription 98.1 9.1E-06 2E-10 63.8 6.2 78 70-152 99-179 (273)
388 PF09547 Spore_IV_A: Stage IV 98.1 2.1E-05 4.6E-10 68.2 9.0 169 16-204 14-232 (492)
389 TIGR03596 GTPase_YlqF ribosome 98.1 1.8E-05 3.9E-10 66.5 8.2 96 92-211 10-105 (276)
390 cd03114 ArgK-like The function 98.0 6.8E-05 1.5E-09 56.9 10.0 20 22-41 2-21 (148)
391 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.2E-05 4.8E-10 60.1 7.2 90 100-208 5-94 (157)
392 PRK01889 GTPase RsgA; Reviewed 98.0 4E-06 8.6E-11 72.8 3.3 58 19-80 195-258 (356)
393 cd01856 YlqF YlqF. Proteins o 98.0 2.6E-05 5.6E-10 60.7 7.3 94 92-209 8-101 (171)
394 KOG0446 Vacuolar sorting prote 98.0 4.8E-06 1E-10 77.2 3.6 130 17-152 27-214 (657)
395 PF02263 GBP: Guanylate-bindin 98.0 7.2E-05 1.6E-09 62.2 9.9 109 16-130 18-130 (260)
396 smart00010 small_GTPase Small 97.9 5.8E-05 1.3E-09 54.8 7.5 23 21-43 2-24 (124)
397 COG0378 HypB Ni2+-binding GTPa 97.9 3.1E-05 6.8E-10 60.3 6.1 23 19-41 13-35 (202)
398 KOG3887 Predicted small GTPase 97.9 9.1E-05 2E-09 59.5 8.8 126 17-152 25-150 (347)
399 PRK13695 putative NTPase; Prov 97.9 0.00026 5.7E-09 55.1 11.0 22 21-42 2-23 (174)
400 PRK09563 rbgA GTPase YlqF; Rev 97.8 8.4E-05 1.8E-09 62.8 8.4 94 93-210 14-107 (287)
401 KOG0780 Signal recognition par 97.8 5.8E-05 1.2E-09 64.6 6.6 121 19-151 101-254 (483)
402 PF05783 DLIC: Dynein light in 97.8 0.00039 8.4E-09 62.3 12.1 27 18-44 24-50 (472)
403 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 4.6E-05 1E-09 57.3 5.1 50 100-152 8-57 (141)
404 cd01855 YqeH YqeH. YqeH is an 97.8 0.00032 6.9E-09 55.4 9.9 95 93-210 24-126 (190)
405 KOG3905 Dynein light intermedi 97.7 0.0018 3.9E-08 54.5 14.2 28 18-45 51-78 (473)
406 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00014 3E-09 45.0 5.7 42 104-148 14-58 (58)
407 COG3840 ThiQ ABC-type thiamine 97.7 3E-05 6.4E-10 59.9 3.2 30 19-48 25-54 (231)
408 COG1116 TauB ABC-type nitrate/ 97.7 4.4E-05 9.5E-10 61.8 3.7 30 19-48 29-58 (248)
409 cd01849 YlqF_related_GTPase Yl 97.7 0.00026 5.5E-09 54.1 7.8 83 105-208 1-84 (155)
410 KOG1533 Predicted GTPase [Gene 97.6 0.00011 2.4E-09 58.8 5.3 80 69-152 97-178 (290)
411 COG0523 Putative GTPases (G3E 97.6 0.0024 5.1E-08 54.7 13.7 75 69-152 85-160 (323)
412 COG3640 CooC CO dehydrogenase 97.6 0.00016 3.6E-09 57.9 6.2 46 101-150 153-198 (255)
413 cd02038 FleN-like FleN is a me 97.6 0.00097 2.1E-08 49.9 10.1 100 23-150 4-110 (139)
414 COG1618 Predicted nucleotide k 97.6 0.0055 1.2E-07 46.5 13.3 118 18-148 4-141 (179)
415 COG1136 SalX ABC-type antimicr 97.6 8.1E-05 1.8E-09 60.0 3.9 27 19-45 31-57 (226)
416 PRK11537 putative GTP-binding 97.6 0.001 2.2E-08 56.9 10.8 25 18-42 3-27 (318)
417 PF00004 AAA: ATPase family as 97.6 0.00034 7.3E-09 51.4 7.0 20 22-41 1-20 (132)
418 cd03229 ABC_Class3 This class 97.6 0.00052 1.1E-08 53.7 8.4 26 19-44 26-51 (178)
419 cd03111 CpaE_like This protein 97.5 0.0014 3E-08 46.7 9.6 101 24-146 5-106 (106)
420 cd00071 GMPK Guanosine monopho 97.5 0.00012 2.6E-09 54.8 4.0 22 22-43 2-23 (137)
421 cd02036 MinD Bacterial cell di 97.5 0.0038 8.3E-08 48.4 12.7 64 70-151 64-128 (179)
422 PRK14738 gmk guanylate kinase; 97.5 0.00015 3.3E-09 58.2 4.8 35 8-43 3-37 (206)
423 KOG1707 Predicted Ras related/ 97.5 0.0012 2.7E-08 59.3 10.7 121 13-152 419-541 (625)
424 COG1126 GlnQ ABC-type polar am 97.5 0.00012 2.6E-09 58.1 3.9 31 18-48 27-57 (240)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.0029 6.2E-08 47.7 11.3 26 19-44 26-51 (144)
426 PF13555 AAA_29: P-loop contai 97.5 0.00013 2.8E-09 46.3 3.1 20 21-40 25-44 (62)
427 COG0194 Gmk Guanylate kinase [ 97.5 7.2E-05 1.6E-09 58.0 2.3 53 18-75 3-55 (191)
428 PRK14737 gmk guanylate kinase; 97.4 0.00016 3.5E-09 57.0 4.1 26 18-43 3-28 (186)
429 PF00005 ABC_tran: ABC transpo 97.4 0.00012 2.7E-09 54.4 3.1 27 19-45 11-37 (137)
430 KOG0066 eIF2-interacting prote 97.4 0.0023 5E-08 56.1 11.0 27 20-46 614-640 (807)
431 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0012 2.5E-08 45.5 7.8 68 22-114 2-69 (99)
432 COG3839 MalK ABC-type sugar tr 97.4 0.00014 3.1E-09 62.1 3.4 29 20-48 30-58 (338)
433 KOG0466 Translation initiation 97.4 0.00015 3.3E-09 60.2 3.4 167 18-213 37-245 (466)
434 TIGR03499 FlhF flagellar biosy 97.4 7.3E-05 1.6E-09 63.0 1.4 25 18-42 193-217 (282)
435 TIGR02475 CobW cobalamin biosy 97.4 0.0014 3.1E-08 56.6 9.3 24 19-42 4-27 (341)
436 cd03230 ABC_DR_subfamily_A Thi 97.3 0.0035 7.5E-08 48.7 10.5 26 19-44 26-51 (173)
437 KOG0463 GTP-binding protein GP 97.3 0.00034 7.4E-09 59.7 5.0 67 70-152 220-288 (641)
438 TIGR03597 GTPase_YqeH ribosome 97.3 0.0014 3.1E-08 57.1 9.0 97 92-207 52-151 (360)
439 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00026 5.6E-09 55.4 3.8 27 18-44 24-50 (177)
440 PRK12289 GTPase RsgA; Reviewed 97.3 0.00095 2.1E-08 57.8 7.7 48 101-152 87-135 (352)
441 COG0488 Uup ATPase components 97.3 0.0013 2.7E-08 60.0 8.6 31 18-48 28-58 (530)
442 PF13207 AAA_17: AAA domain; P 97.3 0.00022 4.8E-09 51.8 3.1 22 21-42 1-22 (121)
443 KOG0469 Elongation factor 2 [T 97.2 0.00046 9.9E-09 61.1 5.0 118 17-150 17-163 (842)
444 cd02042 ParA ParA and ParB of 97.2 0.0045 9.7E-08 43.6 9.2 70 22-114 2-72 (104)
445 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00037 8.1E-09 55.9 4.0 27 18-44 26-52 (211)
446 cd03261 ABC_Org_Solvent_Resist 97.2 0.00039 8.4E-09 56.9 4.0 26 19-44 26-51 (235)
447 TIGR01069 mutS2 MutS2 family p 97.2 0.0033 7.1E-08 60.1 10.5 24 19-42 322-345 (771)
448 COG2884 FtsE Predicted ATPase 97.2 0.00031 6.6E-09 54.7 3.0 28 20-47 29-56 (223)
449 cd00009 AAA The AAA+ (ATPases 97.2 0.0033 7.2E-08 46.4 8.6 26 18-43 18-43 (151)
450 TIGR00960 3a0501s02 Type II (G 97.2 0.00043 9.3E-09 55.8 3.9 27 18-44 28-54 (216)
451 cd03238 ABC_UvrA The excision 97.2 0.00037 8E-09 54.4 3.3 24 18-41 20-43 (176)
452 cd03216 ABC_Carb_Monos_I This 97.2 0.00048 1E-08 53.1 3.9 27 18-44 25-51 (163)
453 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00044 9.6E-09 49.1 3.4 22 19-40 15-36 (107)
454 TIGR02673 FtsE cell division A 97.2 0.00046 1E-08 55.5 4.0 26 19-44 28-53 (214)
455 cd01130 VirB11-like_ATPase Typ 97.2 0.00034 7.5E-09 55.1 3.1 25 19-43 25-49 (186)
456 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00046 9.9E-09 55.7 3.9 26 19-44 30-55 (218)
457 cd03226 ABC_cobalt_CbiO_domain 97.1 0.00046 1E-08 55.2 3.9 27 18-44 25-51 (205)
458 cd03264 ABC_drug_resistance_li 97.1 0.00043 9.2E-09 55.6 3.7 24 21-44 27-50 (211)
459 cd03265 ABC_DrrA DrrA is the A 97.1 0.00049 1.1E-08 55.7 4.0 26 19-44 26-51 (220)
460 TIGR01166 cbiO cobalt transpor 97.1 0.00052 1.1E-08 54.2 4.0 26 19-44 18-43 (190)
461 PRK15177 Vi polysaccharide exp 97.1 0.0005 1.1E-08 55.4 3.9 26 19-44 13-38 (213)
462 TIGR02211 LolD_lipo_ex lipopro 97.1 0.00052 1.1E-08 55.5 4.0 27 18-44 30-56 (221)
463 cd03259 ABC_Carb_Solutes_like 97.1 0.00053 1.1E-08 55.2 4.0 26 19-44 26-51 (213)
464 cd03292 ABC_FtsE_transporter F 97.1 0.00052 1.1E-08 55.2 3.9 27 18-44 26-52 (214)
465 cd03263 ABC_subfamily_A The AB 97.1 0.00055 1.2E-08 55.3 4.0 26 19-44 28-53 (220)
466 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00051 1.1E-08 55.6 3.8 26 19-44 30-55 (220)
467 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00058 1.3E-08 54.9 4.0 27 18-44 25-51 (213)
468 cd03269 ABC_putative_ATPase Th 97.1 0.00057 1.2E-08 54.9 4.0 26 19-44 26-51 (210)
469 cd03224 ABC_TM1139_LivF_branch 97.1 0.00058 1.3E-08 55.3 4.0 27 18-44 25-51 (222)
470 cd03235 ABC_Metallic_Cations A 97.1 0.00057 1.2E-08 55.0 3.9 27 18-44 24-50 (213)
471 PRK13540 cytochrome c biogenes 97.1 0.00059 1.3E-08 54.4 4.0 27 18-44 26-52 (200)
472 TIGR02315 ABC_phnC phosphonate 97.1 0.00056 1.2E-08 56.2 3.9 26 19-44 28-53 (243)
473 COG4525 TauB ABC-type taurine 97.1 0.00053 1.1E-08 53.7 3.4 26 20-45 32-57 (259)
474 KOG4181 Uncharacterized conser 97.1 0.0047 1E-07 52.4 9.1 26 18-43 187-212 (491)
475 PRK10078 ribose 1,5-bisphospho 97.1 0.00046 1E-08 54.4 3.1 23 21-43 4-26 (186)
476 PRK11248 tauB taurine transpor 97.1 0.00062 1.3E-08 56.5 4.0 26 19-44 27-52 (255)
477 TIGR03608 L_ocin_972_ABC putat 97.1 0.0006 1.3E-08 54.5 3.8 26 19-44 24-49 (206)
478 KOG0459 Polypeptide release fa 97.1 0.0005 1.1E-08 59.3 3.4 120 17-151 77-231 (501)
479 PRK13541 cytochrome c biogenes 97.1 0.00065 1.4E-08 53.9 3.9 26 19-44 26-51 (195)
480 cd03257 ABC_NikE_OppD_transpor 97.1 0.00063 1.4E-08 55.3 4.0 26 19-44 31-56 (228)
481 TIGR03864 PQQ_ABC_ATP ABC tran 97.1 0.00062 1.3E-08 55.7 3.9 27 18-44 26-52 (236)
482 cd03258 ABC_MetN_methionine_tr 97.1 0.00065 1.4E-08 55.4 4.0 27 18-44 30-56 (233)
483 cd03214 ABC_Iron-Siderophores_ 97.1 0.0007 1.5E-08 53.0 4.1 27 18-44 24-50 (180)
484 cd03215 ABC_Carb_Monos_II This 97.1 0.00068 1.5E-08 53.2 3.9 26 19-44 26-51 (182)
485 TIGR00157 ribosome small subun 97.1 0.0039 8.4E-08 51.4 8.6 48 100-152 33-82 (245)
486 cd03218 ABC_YhbG The ABC trans 97.1 0.00067 1.5E-08 55.3 4.0 26 19-44 26-51 (232)
487 cd03260 ABC_PstB_phosphate_tra 97.0 0.00057 1.2E-08 55.5 3.6 26 18-43 25-50 (227)
488 PF03215 Rad17: Rad17 cell cyc 97.0 0.021 4.5E-07 52.2 13.8 26 19-44 45-70 (519)
489 TIGR01189 ccmA heme ABC export 97.0 0.00072 1.6E-08 53.8 4.0 27 18-44 25-51 (198)
490 PRK13539 cytochrome c biogenes 97.0 0.00071 1.5E-08 54.2 4.0 27 18-44 27-53 (207)
491 cd03301 ABC_MalK_N The N-termi 97.0 0.0007 1.5E-08 54.4 4.0 26 19-44 26-51 (213)
492 TIGR02868 CydC thiol reductant 97.0 0.00059 1.3E-08 62.7 3.9 29 18-46 360-388 (529)
493 PRK07261 topology modulation p 97.0 0.00052 1.1E-08 53.4 3.0 22 21-42 2-23 (171)
494 cd03219 ABC_Mj1267_LivG_branch 97.0 0.00068 1.5E-08 55.4 3.9 26 19-44 26-51 (236)
495 PRK10908 cell division protein 97.0 0.00072 1.5E-08 54.8 4.0 27 18-44 27-53 (222)
496 PRK05480 uridine/cytidine kina 97.0 0.00055 1.2E-08 54.9 3.3 26 17-42 4-29 (209)
497 cd03231 ABC_CcmA_heme_exporter 97.0 0.00074 1.6E-08 53.9 4.0 27 18-44 25-51 (201)
498 PRK11629 lolD lipoprotein tran 97.0 0.00069 1.5E-08 55.3 3.9 26 19-44 35-60 (233)
499 cd03236 ABC_RNaseL_inhibitor_d 97.0 0.00072 1.6E-08 56.1 4.0 29 18-46 25-53 (255)
500 PRK10895 lipopolysaccharide AB 97.0 0.00074 1.6E-08 55.5 4.0 27 18-44 28-54 (241)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=1.4e-38 Score=256.49 Aligned_cols=211 Identities=42% Similarity=0.724 Sum_probs=173.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
++|+|+|++|+||||++|+|+|...+.+..+..++|..+...... ..+..+.||||||+.++....+.+...+.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~-~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE-VDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE-ETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee-ecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 589999999999999999999999988887778889888888775 7899999999999999888888888899999988
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
+.+++|++|||++++ +++..+...++.+.+.||.+++++++||+|++|...+ ..+++|+....+..++++++.|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 899999999999999 9999999999999999999999999999999999887 6688888743345799999999999
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQ 234 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (259)
+++|++...+......++.+||+.|.+++.++++.+|++++|+++++..++.+++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~~~~~~ 211 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKEEYQAQ 211 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH-----
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhhc
Confidence 9999998444445568999999999999999999999999999999876655443
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=2.1e-35 Score=235.67 Aligned_cols=196 Identities=51% Similarity=0.839 Sum_probs=173.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
++|+|+|++|+|||||+|+|+|...+.+.....+.|..+...... ..+..+.+|||||+++.......+...+..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 479999999999999999999999877776667888888877766 4788999999999998876666777788888888
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
+.+++|++|||++++. ++..+...++.+.+.||...++++++|+|++|.+.. .++++++.. ....++.+++.|+++
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 8899999999999984 999999999999999998888999999999999977 789999884 457899999999999
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIF 221 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~ 221 (259)
++.|++... ++....++.+|++.|.+++++|++.+|++++|
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999876 45667999999999999999999999998754
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.94 E-value=3e-25 Score=180.72 Aligned_cols=181 Identities=16% Similarity=0.253 Sum_probs=137.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
...|+++|+||||||||+|+|+|..+ +.+++.+.|+.....++...++.+++|+||||++.+ ...+.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 46899999999999999999999998 556677788888888777677889999999999965 4556778888888
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCccc-HHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDET-LEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.+..++|+++||+|++..+...|..+++.+++ .. .|+++++||+|...+ +. +..+ .+......
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-~~----~pvil~iNKID~~~~--~~~l~~~---------~~~~~~~~ 144 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK-TK----TPVILVVNKIDKVKP--KTVLLKL---------IAFLKKLL 144 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhh-cC----CCeEEEEEccccCCc--HHHHHHH---------HHHHHhhC
Confidence 88999999999999997899999999998887 22 399999999999877 22 2211 11122212
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELK 225 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~ 225 (259)
...-.|..++.. ..++..|++.+.+.+++ +..+|..+++.+..
T Consensus 145 ~f~~ivpiSA~~----g~n~~~L~~~i~~~Lpe-g~~~yp~d~itD~~ 187 (298)
T COG1159 145 PFKEIVPISALK----GDNVDTLLEIIKEYLPE-GPWYYPEDQITDRP 187 (298)
T ss_pred CcceEEEeeccc----cCCHHHHHHHHHHhCCC-CCCcCChhhccCCh
Confidence 111233333332 37899999999999986 45577777665544
No 4
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=157.20 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH---HHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE---FVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~---~~~~~~ 93 (259)
...+-|+++|+||||||||||+|+|.........++|.|+...++.+. ..+.+||.||++..+.+.. .+...+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 356789999999999999999999977444445578999999887543 2388999999998776652 344445
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
..++.... ...++++++|+.+.+...|.++++++.. .+. |++||+||+|.+.. .... +.+..+.
T Consensus 98 ~~YL~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~-~~i----~~~vv~tK~DKi~~--~~~~--------k~l~~v~ 161 (200)
T COG0218 98 EEYLEKRA-NLKGVVLLIDARHPPKDLDREMIEFLLE-LGI----PVIVVLTKADKLKK--SERN--------KQLNKVA 161 (200)
T ss_pred HHHHhhch-hheEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CeEEEEEccccCCh--hHHH--------HHHHHHH
Confidence 55544322 3688999999998899999999999988 454 99999999999976 2221 1223333
Q ss_pred HHc----CCc--EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLC----ENR--RVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~----~~~--~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+.. ... +..|++... .|+++|...|.+.+..
T Consensus 162 ~~l~~~~~~~~~~~~~ss~~k------~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 162 EELKKPPPDDQWVVLFSSLKK------KGIDELKAKILEWLKE 198 (200)
T ss_pred HHhcCCCCccceEEEEecccc------cCHHHHHHHHHHHhhc
Confidence 222 223 455555543 6799999999887654
No 5
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.91 E-value=7.6e-23 Score=170.09 Aligned_cols=193 Identities=23% Similarity=0.307 Sum_probs=135.9
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985 13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
.+.....++|+++|.+|+||||++|+|+|...+..... .+.|......... ..+..+.+|||||+.+....++.....
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEE-ECCeEEEEEECCCCCchHHHHHHHHHH
Confidence 44556778999999999999999999999986443222 2333333333223 578899999999999764333333222
Q ss_pred HHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
+..++ ...++|++|||.+.+ .+++..|..+++.+.+.||.+++++++||+||+|..++++.++++|+.+ ....+++
T Consensus 110 ik~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 110 IKRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 22222 234789999997665 3788899999999999999999999999999999887666899999984 6778888
Q ss_pred HHHHcC-----------CcEEEEeCCCccc---------ccchhHHHHHHHHHHHHHHH
Q 024985 172 ILQLCE-----------NRRVLFDNKTKDA---------ATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 172 ~~~~~~-----------~~~~~~~~~~~~~---------~~~~~~i~eLl~~i~~~~~~ 210 (259)
+++.+. .++.+..|+.... .+....+..|++.|-++...
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~ 245 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN 245 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence 887653 2334555442211 01123578899988887654
No 6
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=6.4e-23 Score=155.48 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~~~~~~~~~ 97 (259)
.+|+++|.||+|||||+|+|+|..... ..++++|.......+. ..+..+.++||||+++..... +.+...+ +
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~-~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~---l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFK-LGDQQVELVDLPGIYSLSSKSEEERVARDY---L 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEE-ETTEEEEEEE----SSSSSSSHHHHHHHHH---H
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEE-ecCceEEEEECCCcccCCCCCcHHHHHHHH---H
Confidence 379999999999999999999999532 3468888887776665 577899999999988654332 2222222 2
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
. ...+|++++|+|++ .+ ..+..++..+.+ +|. |+++|+||+|..... ........+.+..+
T Consensus 75 ~--~~~~D~ii~VvDa~-~l-~r~l~l~~ql~e-~g~----P~vvvlN~~D~a~~~----------g~~id~~~Ls~~Lg 135 (156)
T PF02421_consen 75 L--SEKPDLIIVVVDAT-NL-ERNLYLTLQLLE-LGI----PVVVVLNKMDEAERK----------GIEIDAEKLSERLG 135 (156)
T ss_dssp H--HTSSSEEEEEEEGG-GH-HHHHHHHHHHHH-TTS----SEEEEEETHHHHHHT----------TEEE-HHHHHHHHT
T ss_pred h--hcCCCEEEEECCCC-CH-HHHHHHHHHHHH-cCC----CEEEEEeCHHHHHHc----------CCEECHHHHHHHhC
Confidence 1 35789999999998 44 333456666666 453 999999999987542 11223556666667
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLV 204 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i 204 (259)
.+++.+++... +|+.+|++.|
T Consensus 136 ~pvi~~sa~~~------~g~~~L~~~I 156 (156)
T PF02421_consen 136 VPVIPVSARTG------EGIDELKDAI 156 (156)
T ss_dssp S-EEEEBTTTT------BTHHHHHHHH
T ss_pred CCEEEEEeCCC------cCHHHHHhhC
Confidence 77666766543 7899998875
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=173.21 Aligned_cols=162 Identities=22% Similarity=0.239 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
+.|+++|+||||||||+|+|+|.....+. ..+|+|++..+....| .+..|.+|||+|+.+.. .+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 78999999999999999999999975553 4688999999888874 66779999999998643 24456666666666
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
+...||++|||+|+..++++.|..+.++|.+ .+ +|+++|+||+|..... . ...+.-..--+.
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~----kpviLvvNK~D~~~~e-~------------~~~efyslG~g~ 141 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRR-SK----KPVILVVNKIDNLKAE-E------------LAYEFYSLGFGE 141 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEEcccCchhh-h------------hHHHHHhcCCCC
Confidence 7778899999999998999999999999984 33 3999999999977330 1 112222221234
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
++.+++.+. .|+.+|++.+.+.++
T Consensus 142 ~~~ISA~Hg------~Gi~dLld~v~~~l~ 165 (444)
T COG1160 142 PVPISAEHG------RGIGDLLDAVLELLP 165 (444)
T ss_pred ceEeehhhc------cCHHHHHHHHHhhcC
Confidence 556666543 789999999998874
No 8
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.89 E-value=6.8e-22 Score=176.62 Aligned_cols=162 Identities=22% Similarity=0.324 Sum_probs=121.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+|+|++|+||||++|+|+|...+.+.....+ |+.+...... ..+..+.||||||+.++..... ....+...+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~-idG~~L~VIDTPGL~dt~~dq~-~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGL-VQGVKIRVIDTPGLKSSASDQS-KNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEE-ECCceEEEEECCCCCccccchH-HHHHHHHHHH
Confidence 47899999999999999999999987766543344 4444333233 4678999999999998754322 2334444332
Q ss_pred h--cCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCc-----ccHHhhhCCCCCchHH
Q 024985 99 M--AKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDND-----ETLEDYLGPECPKPLK 170 (259)
Q Consensus 99 ~--~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~-----~~~~~~~~~~~~~~l~ 170 (259)
. ...++|++|||+.++. ....++..+++.|.+.||..+++++|||+|++|.+++++ .++++|+.+ +...++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 2 2346899999998762 233467789999999999999999999999999997532 689999984 777899
Q ss_pred HHHHHcCCcEEEEe
Q 024985 171 EILQLCENRRVLFD 184 (259)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (259)
.++..|.++...|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999998666554
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=6.2e-22 Score=165.44 Aligned_cols=175 Identities=15% Similarity=0.211 Sum_probs=110.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|++|||||||+|+|+|..... +++.+.|+......+...++..+.+|||||+..... .+...+.+....+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~--vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI--TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee--cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHH
Confidence 69999999999999999999987632 333333333333344434566899999999876422 2333344444455
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-c
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-R 179 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 179 (259)
...+|++++|+|++...+.. ..+++.+.. .+ .|+++|+||+|+... ..+.+ .+..+....+. .
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~--------~~~~~~~~~~~~~ 140 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLP--------LIDKYAILEDFKD 140 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHH--------HHHHHHhhcCCCc
Confidence 67889999999998554443 445555544 23 499999999998743 22221 12222222222 3
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAE 223 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~ 223 (259)
++.+++. .+ .|+.+|++.+.+.+++ +...|..++..+
T Consensus 141 v~~iSA~--~g----~gi~~L~~~l~~~l~~-~~~~~~~~~~t~ 177 (270)
T TIGR00436 141 IVPISAL--TG----DNTSFLAAFIEVHLPE-GPFRYPEDYVTD 177 (270)
T ss_pred eEEEecC--CC----CCHHHHHHHHHHhCCC-CCCCCCCcccCC
Confidence 3334433 32 7999999999998865 344565554443
No 10
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.88 E-value=1.3e-21 Score=160.45 Aligned_cols=136 Identities=28% Similarity=0.348 Sum_probs=102.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSK 91 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~ 91 (259)
.....++|+|+|++|||||||+|+|+|...+.... ..+.|..+..+... .++..+.+|||||+.++.... ..+..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 34567999999999999999999999998755432 34556666655444 567899999999999764321 22333
Q ss_pred HHHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCc
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDND 154 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~ 154 (259)
.+..++. ..++|+++||..++ .++...+..+++.|.+.||.+++.++++|+||+|...+++
T Consensus 105 ~I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 105 SIKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 3333332 23679999998776 4778888999999999999999999999999999986643
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.1e-21 Score=166.67 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=140.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH-HHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK-EIVKC 96 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~-~~~~~ 96 (259)
...+|+++|+||+|||||+|+|+|++..... ...|+|++.....+. .+++.+.+|||.|+.....-.+.+.. .+.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEE-ECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 4689999999999999999999999964443 245677777766666 78999999999998743322221100 01111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
..+...++++++|+|++.+++.+|..++..+.+ .|. +++||+||||+++.+...++++.. .++..+...
T Consensus 255 -~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~-~g~----~~vIvvNKWDl~~~~~~~~~~~k~-----~i~~~l~~l 323 (444)
T COG1160 255 -LKAIERADVVLLVIDATEGISEQDLRIAGLIEE-AGR----GIVIVVNKWDLVEEDEATMEEFKK-----KLRRKLPFL 323 (444)
T ss_pred -HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH-cCC----CeEEEEEccccCCchhhHHHHHHH-----HHHHHhccc
Confidence 123456699999999999999999999999888 454 999999999998764344454433 455566666
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGA 228 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~~ 228 (259)
+....+|-+.. ...++.+|++.+.+.....+.+.-+..+...++.+.
T Consensus 324 ~~a~i~~iSA~-----~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~ 370 (444)
T COG1160 324 DFAPIVFISAL-----TGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAV 370 (444)
T ss_pred cCCeEEEEEec-----CCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 66544443332 237899999999999998888888888888877653
No 12
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=5.7e-21 Score=164.09 Aligned_cols=179 Identities=20% Similarity=0.275 Sum_probs=116.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...+|+++|++|||||||+|+|++..... .++ ..+|.......+. .++.++.||||||+..... .+...+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~i--vs~k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~~---~l~~~~~r~ 124 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSI--VTPKVQTTRSIITGIIT-LKDTQVILYDTPGIFEPKG---SLEKAMVRC 124 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceee--ccCCCCCccCcEEEEEE-eCCeEEEEEECCCcCCCcc---cHHHHHHHH
Confidence 34599999999999999999999987632 222 3344443333333 5677899999999865322 233344444
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...++.++|++|||+|....+...+..+++.+... + .|.++|+||+|+... .+. .+.+.+...
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~---------~~~~~l~~~ 187 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLN---------DIKAFLTEN 187 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHH---------HHHHHHHhc
Confidence 44456788999999998877777776677766552 2 377899999997532 111 122222222
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAEL 224 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~ 224 (259)
.....+|..++..+ .|+.+|++.+.+.+++ +..+|..+++.+.
T Consensus 188 ~~~~~i~~iSAktg----~gv~eL~~~L~~~l~~-~~~~~~~~~~td~ 230 (339)
T PRK15494 188 HPDSLLFPISALSG----KNIDGLLEYITSKAKI-SPWLYAEDDITDL 230 (339)
T ss_pred CCCcEEEEEeccCc----cCHHHHHHHHHHhCCC-CCCCCCCCCCCCC
Confidence 21123444444333 7999999999998875 5566766665443
No 13
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=6.3e-21 Score=161.32 Aligned_cols=178 Identities=17% Similarity=0.280 Sum_probs=115.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
...|+++|++|||||||+|+|+|..... .++.+.|+......+...++..+.+|||||+.... ..+.+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 4689999999999999999999988633 23333444444443333355789999999998643 223344444555
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
.+...+|++++|+|++..++..+..+++.+.. . ..|+++|+||+|+.... ..+.. .+..+.+..+.
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-~----~~pvilVlNKiDl~~~~-~~l~~--------~~~~l~~~~~~ 145 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKK-V----KTPVILVLNKIDLVKDK-EELLP--------LLEELSELMDF 145 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-c----CCCEEEEEECCcCCCCH-HHHHH--------HHHHHHhhCCC
Confidence 56678899999999986677777777776653 2 24999999999987331 22222 22233332222
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIF 221 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~ 221 (259)
..+|..++..+ .++.+|++.+.+.++++ ...|..++.
T Consensus 146 -~~i~~iSA~~~----~gv~~L~~~L~~~l~~~-~~~y~~~~~ 182 (292)
T PRK00089 146 -AEIVPISALKG----DNVDELLDVIAKYLPEG-PPYYPEDQI 182 (292)
T ss_pred -CeEEEecCCCC----CCHHHHHHHHHHhCCCC-CCCCCCCCC
Confidence 12333333332 78999999999988763 345655443
No 14
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=7e-20 Score=159.41 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
-|+|+|.||||||||+|+|++... .....+.+|..+....+...++..++|+||||+.........+...+.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--- 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL--- 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH---
Confidence 799999999999999999998774 223345566666666555334467999999999865443333444555443
Q ss_pred CCCccEEEEEEeCC---CC-CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 101 KDGIHAVLLVFSVR---NR-FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 101 ~~~~~~il~v~d~~---~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
..+|++++|+|++ .. .......+++.+......-..+|+++|+||+|+... ..+.+ .++.+.+..
T Consensus 236 -~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~--------~l~~l~~~~ 304 (390)
T PRK12298 236 -ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEE--------RAKAIVEAL 304 (390)
T ss_pred -HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHH--------HHHHHHHHh
Confidence 4559999999986 11 112224455555542111123599999999998754 22222 233333333
Q ss_pred CC--cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 024985 177 EN--RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIF 221 (259)
Q Consensus 177 ~~--~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~ 221 (259)
+. .++.+++.. ..++.+|++.|.+.+++. ...|..++.
T Consensus 305 ~~~~~Vi~ISA~t------g~GIdeLl~~I~~~L~~~-~~~~~~~~~ 344 (390)
T PRK12298 305 GWEGPVYLISAAS------GLGVKELCWDLMTFIEEN-PREEAEEAE 344 (390)
T ss_pred CCCCCEEEEECCC------CcCHHHHHHHHHHHhhhC-cccCCcccc
Confidence 32 344455443 278999999999998764 444554443
No 15
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=4.1e-19 Score=151.74 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
..|+|+|.+|||||||+|+|++... .....+.+|..+....+.+.++..+.++||||+.+.......+...+.+++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie- 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE- 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh-
Confidence 4689999999999999999998764 2233455666666665554456789999999998654443445555555544
Q ss_pred cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
.++++|+|+|+++.-+..+ ..+.+.|......-..+|+++|+||+|+... ..... ..++......+.
T Consensus 236 ---~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~-------~~~~~~~~~~~~ 303 (335)
T PRK12299 236 ---RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEERE-------KRAALELAALGG 303 (335)
T ss_pred ---hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHH-------HHHHHHHHhcCC
Confidence 4599999999984333333 2344445442111124699999999998754 21111 012222233333
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.++..++. .. .++.+|++.|.+.+.+
T Consensus 304 ~i~~iSAk--tg----~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFLISAV--TG----EGLDELLRALWELLEE 329 (335)
T ss_pred CEEEEEcC--CC----CCHHHHHHHHHHHHHh
Confidence 44444443 22 7899999999888765
No 16
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.83 E-value=1.3e-19 Score=132.38 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+|+|++|+|||||+|+|++........ ..++|....+..+. .++..+.++||||+.+....... .+.+...+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~-~~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFE-YNNKKFILVDTPGINDGESQDND-GKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEE-ETTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeee-eceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence 58999999999999999999976433333 35666666544444 57788899999999875432221 12233333333
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
..+|+++||+|++.+....+..+++.+. . ..|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~----~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--N----KKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--T----TSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--c----CCCEEEEEcC
Confidence 6779999999987544555667777773 2 2499999998
No 17
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=3.8e-19 Score=138.04 Aligned_cols=163 Identities=23% Similarity=0.224 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE-FVSKEIVKCIG 98 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~-~~~~~~~~~~~ 98 (259)
++|+++|.+|||||||+|+|++..... ...++.|..+...... ..+..+.+|||||+.+...... .+.......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-- 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFD-YKYLRWQVIDTPGLLDRPLEERNTIEMQAITA-- 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEc-cCceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence 579999999999999999999887521 1123345555544433 3567999999999864322111 111111111
Q ss_pred hcCCCccEEEEEEeCCCCCC---HhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 99 MAKDGIHAVLLVFSVRNRFS---EEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+|++|+|+|+++..+ .....++..+...+. ..|+++|+||+|+... ....+ .+.....
T Consensus 76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~---------~~~~~~~ 140 (168)
T cd01897 76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE---------IEEEEEL 140 (168)
T ss_pred -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH---------HHHhhhh
Confidence 1123589999999984432 222445566654331 3599999999998754 22221 1122222
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.... +|..++..+ .|+.+|++.+.+.+
T Consensus 141 ~~~~--~~~~Sa~~~----~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEE--VLKISTLTE----EGVDEVKNKACELL 167 (168)
T ss_pred ccCc--eEEEEeccc----CCHHHHHHHHHHHh
Confidence 1222 344443333 78999999887654
No 18
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.1e-18 Score=155.46 Aligned_cols=189 Identities=20% Similarity=0.237 Sum_probs=120.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|++|+|||||+|+|++....... ...++|.......+. .++..+.+|||||+.........+........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEE-ECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4689999999999999999999998753332 234556555444443 56788999999998654332221111111111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
..+...+|++|+|+|++.+.+..+..++..+.+ .+ .|+++|+||+|+... ....++.. .+...+....
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~-~~----~~~ivv~NK~Dl~~~--~~~~~~~~-----~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALE-AG----RALVIVVNKWDLVDE--KTMEEFKK-----ELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CcEEEEEECccCCCH--HHHHHHHH-----HHHHhccccc
Confidence 223456799999999998899988887777655 33 399999999998743 32332221 2222222222
Q ss_pred C-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985 178 N-RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK 226 (259)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
. +++..++. . ..++.++++.+.+.......+.-+..+...+++
T Consensus 318 ~~~i~~~SA~--~----~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~ 361 (435)
T PRK00093 318 YAPIVFISAL--T----GQGVDKLLEAIDEAYENANRRISTSVLNRVLEE 361 (435)
T ss_pred CCCEEEEeCC--C----CCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHH
Confidence 2 23333332 2 278999999999888766555445555555443
No 19
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=8.4e-19 Score=153.51 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=107.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
.|+|+|.||||||||+|+|++... .....+.+|..+....+.+.++..++++||||+.........+...+.+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhie-- 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIE-- 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHh--
Confidence 899999999999999999998774 2223456676676665553347799999999998644333344555555444
Q ss_pred CCCccEEEEEEeCCCC---CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 101 KDGIHAVLLVFSVRNR---FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
.++++|+|+|+++. -...+ ..+.+.|......-..+|++||+||+|+... ...+..+.+..
T Consensus 236 --r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-------------~e~l~~l~~~l 300 (424)
T PRK12297 236 --RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-------------EENLEEFKEKL 300 (424)
T ss_pred --hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-------------HHHHHHHHHHh
Confidence 44999999999732 12222 3444555543211134699999999996322 11233344444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
+..++.+++. .. .++.+|++.|.+.+....
T Consensus 301 ~~~i~~iSA~--tg----eGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 301 GPKVFPISAL--TG----QGLDELLYAVAELLEETP 330 (424)
T ss_pred CCcEEEEeCC--CC----CCHHHHHHHHHHHHHhCc
Confidence 4334444443 22 789999999999887653
No 20
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=150.16 Aligned_cols=163 Identities=22% Similarity=0.277 Sum_probs=113.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|+||||||||+|+|++.+...+. .-+|+|++.....+. .+|.++.++||+|+.++...-+++. ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~-i~G~pv~l~DTAGiRet~d~VE~iG---IeR 289 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDIN-LNGIPVRLVDTAGIRETDDVVERIG---IER 289 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEE-ECCEEEEEEecCCcccCccHHHHHH---HHH
Confidence 45789999999999999999999999975543 346777777776665 7999999999999997543222211 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
.......+|.+|||+|++..++..+...++.+ ...+|+++|.||.|+.... ... .. +..
T Consensus 290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~~--~~~---------~~----~~~ 348 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSKI--ELE---------SE----KLA 348 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhccccc--ccc---------hh----hcc
Confidence 23345577999999999977788887777722 1234999999999998762 111 11 111
Q ss_pred C-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 177 E-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
. .....++... .+|+..|.+.|.+++...
T Consensus 349 ~~~~~i~iSa~t------~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 349 NGDAIISISAKT------GEGLDALREAIKQLFGKG 378 (454)
T ss_pred CCCceEEEEecC------ccCHHHHHHHHHHHHhhc
Confidence 1 1234444432 278999999999988765
No 21
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=1.9e-18 Score=153.84 Aligned_cols=190 Identities=19% Similarity=0.224 Sum_probs=119.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|.+|+|||||+|+|++....... ...++|.+.....+. .++..+.+|||||+.........+........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~-~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFE-RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEE-ECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4579999999999999999999998743322 234555555444444 46778999999998754332211111111111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
..+...+|++|+|+|++.+.+..+..++..+.+ .+ .|+++|+||+|+... ....+++.. .++..+...+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~-~~~~~~~~~-----~~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILE-AG----KALVIVVNKWDLVKD-EKTREEFKK-----ELRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-cC----CcEEEEEECcccCCC-HHHHHHHHH-----HHHHhcccCC
Confidence 224567799999999998899988877776655 23 399999999999832 123333221 2222222222
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELK 225 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~ 225 (259)
... ++..++..+ .++.++++.+.........+.-+..+...++
T Consensus 318 ~~~-vi~~SA~~g----~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~ 360 (429)
T TIGR03594 318 FAP-IVFISALTG----QGVDKLLDAIDEVYENANRRISTSKLNRVLE 360 (429)
T ss_pred CCc-eEEEeCCCC----CCHHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 222 233333332 7899999999998877665555555554444
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.82 E-value=3.3e-19 Score=138.66 Aligned_cols=164 Identities=19% Similarity=0.177 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ-VVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
+|+++|++|||||||+|+|.+.... +. ..++.|.......+. ..+. .+.+|||||+.+.......+...+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~-~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--- 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IA-DYPFTTLVPNLGVVR-VDDGRSFVVADIPGLIEGASEGKGLGHRFLRH--- 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-cc-CCCccccCCcceEEE-cCCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence 5899999999999999999987641 11 123344444444333 3444 899999999864322111122222222
Q ss_pred cCCCccEEEEEEeCCCC-CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc-
Q 024985 100 AKDGIHAVLLVFSVRNR-FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC- 176 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 176 (259)
...+|++++|+|++++ -+... ..+.+.+..........|+++|+||+|+.+. ....+ .+.......
T Consensus 76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~--------~~~~~~~~~~ 144 (170)
T cd01898 76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFE--------LLKELLKELW 144 (170)
T ss_pred -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHH--------HHHHHHhhCC
Confidence 2356999999999844 22222 3444455443211124599999999998754 22222 122333332
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
...++..++. .. .++.++++.+.+.
T Consensus 145 ~~~~~~~Sa~--~~----~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFPISAL--TG----EGLDELLRKLAEL 169 (170)
T ss_pred CCCEEEEecC--CC----CCHHHHHHHHHhh
Confidence 2233333333 22 7899999887654
No 23
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=2.9e-18 Score=136.58 Aligned_cols=171 Identities=18% Similarity=0.319 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~~~ 93 (259)
...++|+++|.+|+|||||+|+|++...........++|..+.... .+..+.||||||+....... +.+...+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 3568899999999999999999998752222223345565554432 14689999999987543322 1121112
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
...+ .....++++++|+|++.+.+..+..+++++.. .+ .|+++|+||+|+... ...+.... .+...+
T Consensus 98 ~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~-----~i~~~l 164 (196)
T PRK00454 98 EEYL-RTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLK-----KVRKAL 164 (196)
T ss_pred HHHH-HhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHH-----HHHHHH
Confidence 2222 22345678899999886777766666666643 33 389999999998754 22222111 233333
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
......++..+. .++ .++.++++.|.+++++
T Consensus 165 ~~~~~~~~~~Sa--~~~----~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 165 KFGDDEVILFSS--LKK----QGIDELRAAIAKWLAE 195 (196)
T ss_pred HhcCCceEEEEc--CCC----CCHHHHHHHHHHHhcC
Confidence 322233433333 333 7899999999888764
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.8e-18 Score=155.14 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=119.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC- 96 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~- 96 (259)
...+|+++|++|||||||+|+|++....... ..+++|.+.....+. .++..+.+|||||+........ ....+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~-~~~~~~~l~DTaG~~~~~~~~~-~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIE-LGGKTWRFVDTAGLRRRVKQAS-GHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEE-ECCEEEEEEECCCccccccccc-hHHHHHHHH
Confidence 4689999999999999999999998753222 234556555444444 5778899999999853221110 01111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+...+|++++|+|++++.+..+..++..+.. .+ .|+++|+||+|+... .....+.. .+...+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-~~----~piIiV~NK~Dl~~~--~~~~~~~~-----~i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-AG----RALVLAFNKWDLVDE--DRRYYLER-----EIDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--hHHHHHHH-----HHHHhcccC
Confidence 1224567899999999998888888777776654 23 499999999998753 21111100 111111111
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG 227 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (259)
.... ++..++.. ..++.+|+..+.+.+.....+.-+..+...+++.
T Consensus 355 ~~~~-~~~~SAk~----g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~ 400 (472)
T PRK03003 355 PWAP-RVNISAKT----GRAVDKLVPALETALESWDTRIPTGRLNAWLGEL 400 (472)
T ss_pred CCCC-EEEEECCC----CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 2111 22333333 3789999999999988777666666666666554
No 25
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=3.8e-19 Score=146.46 Aligned_cols=132 Identities=19% Similarity=0.233 Sum_probs=96.2
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh-HHH
Q 024985 11 MPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFV 89 (259)
Q Consensus 11 ~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~-~~~ 89 (259)
.+++.....++|+++|.||||||||+++|++..+ .-.+++.+|+......+. .++..+.+|||||+.|...+. +.+
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe-~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFE-RGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeee-cCCceEEEecCCcccCCChHHhcHH
Confidence 3667777889999999999999999999999886 334455566666666555 677799999999999754322 122
Q ss_pred HHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 90 SKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..+..-.+.. -.++|+|++|++ ++++-++ ..+++.++..|.. |+++|+||+|....
T Consensus 237 E~qAi~AL~h---l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~ 295 (346)
T COG1084 237 ERQAILALRH---LAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHHHH---hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch
Confidence 2222222222 237899999997 5566554 6778888887774 99999999998855
No 26
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=7.6e-19 Score=134.51 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=100.9
Q ss_pred EEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCC
Q 024985 23 VLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKD 102 (259)
Q Consensus 23 ~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (259)
+++|.+|+|||||+|+|++....... ..+++|......... ..+..+.+|||||+.+... .+...+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAE-WGGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEE-ECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 47999999999999999987642222 234555555555444 5678899999999876432 222333333333455
Q ss_pred CccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-cEE
Q 024985 103 GIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-RRV 181 (259)
Q Consensus 103 ~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 181 (259)
.+|++++|+|+.++.+..+..++.++.. .+ .|+++|+||+|+... ... ...+...+. .++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~-~~----~piiiv~nK~D~~~~--~~~------------~~~~~~~~~~~~~ 136 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRK-SK----KPVILVVNKVDNIKE--EDE------------AAEFYSLGFGEPI 136 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHh-cC----CCEEEEEECcccCCh--HHH------------HHHHHhcCCCCeE
Confidence 6799999999986777766666666655 23 499999999998754 111 112222332 344
Q ss_pred EEeCCCcccccchhHHHHHHHHHHHH
Q 024985 182 LFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 182 ~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.++... ..++.+|++.+.+.
T Consensus 137 ~~Sa~~------~~gv~~l~~~l~~~ 156 (157)
T cd01894 137 PISAEH------GRGIGDLLDAILEL 156 (157)
T ss_pred EEeccc------CCCHHHHHHHHHhh
Confidence 444432 26899999887653
No 27
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=1.6e-18 Score=133.72 Aligned_cols=160 Identities=20% Similarity=0.275 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.|+++|++|||||||+|+|++..... ......+.|............+..+.+|||||.. .+...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-----------~~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-----------KFIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-----------HHHHHHHh
Confidence 68999999999999999999754211 1111233454444444442226789999999952 22223334
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-C
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE-N 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 178 (259)
.+.++|++++|+|+++.........+..+.. .+ .+|+++|+||+|+... ........ .+.+.++..+ .
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~~~--~~~~~~~~-----~~~~~~~~~~~~ 139 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LG---IKRGLVVLTKADLVDE--DWLELVEE-----EIRELLAGTFLA 139 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hC---CCcEEEEEECccccCH--HHHHHHHH-----HHHHHHHhcCcC
Confidence 4567899999999985554555455544433 22 1389999999998754 21111111 2223333311 1
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
...++..++..+ .++.+|+..+..
T Consensus 140 ~~~~~~~Sa~~~----~~v~~l~~~l~~ 163 (164)
T cd04171 140 DAPIFPVSAVTG----EGIEELKEYLDE 163 (164)
T ss_pred CCcEEEEeCCCC----cCHHHHHHHHhh
Confidence 122333333332 789999887754
No 28
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.5e-18 Score=155.72 Aligned_cols=164 Identities=21% Similarity=0.211 Sum_probs=110.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...++|+++|++|||||||+|+|++....... ..+++|.+....... ..+..+.+|||||+.... ..+...+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~-~~~~~~~l~DT~G~~~~~---~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAE-WNGRRFTVVDTGGWEPDA---KGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEE-ECCcEEEEEeCCCcCCcc---hhHHHHHHHH
Confidence 34579999999999999999999987643332 345677766666555 567889999999976321 2233344444
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...++..+|++|||+|++++.+..+..++.++.. .+ .|+++|+||+|+.... ... .... ..
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-~~----~piilV~NK~Dl~~~~-~~~------------~~~~-~~ 171 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRR-SG----KPVILAANKVDDERGE-ADA------------AALW-SL 171 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCccc-hhh------------HHHH-hc
Confidence 4555667899999999998888877777777764 22 4999999999976321 111 1111 11
Q ss_pred CC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 177 EN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+. .++.. ++..+ .|+.+|++.|.+.+.+
T Consensus 172 g~~~~~~i--SA~~g----~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 172 GLGEPHPV--SALHG----RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCeEEE--EcCCC----CCcHHHHHHHHhhccc
Confidence 21 22333 33332 7899999988877644
No 29
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=7.3e-19 Score=135.55 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|++|+|||||+|++++........ ...++..... ......+..+.+|||||+........ ..+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~---~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLG---ERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHH---HHHHHHHH
Confidence 4789999999999999999999987533222 1222332222 22223456899999999876432211 12333333
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE- 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 177 (259)
.....+|++++|+|++...+..+..++..+... + .|+++|+||+|+.... ..+.++ +..+....+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~-~~~~~~--------~~~~~~~~~~ 143 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVKDK-EDLLPL--------LEKLKELGPF 143 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccccH-HHHHHH--------HHHHHhccCC
Confidence 445677999999999866566666666666542 2 3999999999987431 222222 222222222
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
..++..+.. . ..++.+|++.|.+.
T Consensus 144 ~~~~~~s~~--~----~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEIFPISAL--K----GENVDELLEEIVKY 167 (168)
T ss_pred CceEEEEec--c----CCChHHHHHHHHhh
Confidence 223333332 2 26899998888654
No 30
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=5.2e-19 Score=137.18 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
++|+++|.+|+|||||+|+|++..... ....+.|.......+... .+..+.+|||||... +....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence 469999999999999999999876522 223345555444444422 367899999999532 11122
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH----
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL---- 173 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~---- 173 (259)
......+|++++|+|+++.........+..+.. .+ .|+++|+||+|+.........+.+ ....
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~~~~~~~~~~--------~~~~~~~~ 134 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNANPERVKNEL--------SELGLQGE 134 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccccHHHHHHHH--------HHhhcccc
Confidence 223457799999999986665565666665544 33 499999999998643111111111 1111
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+..+..+.++..++..+ .++.+|++.+.++..
T Consensus 135 ~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~~~ 166 (168)
T cd01887 135 DEWGGDVQIVPTSAKTG----EGIDDLLEAILLLAE 166 (168)
T ss_pred ccccCcCcEEEeecccC----CCHHHHHHHHHHhhh
Confidence 01122233444444433 789999999877643
No 31
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=1.3e-18 Score=148.64 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
..|+|+|.+|||||||+|+|++.... ....+.+|..+....+...++..+.++||||+.........+...+.+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie- 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE- 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH-
Confidence 57899999999999999999987641 223345566666655553333799999999997654333344555555544
Q ss_pred cCCCccEEEEEEeCCCC---CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 100 AKDGIHAVLLVFSVRNR---FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.++++|+|+|+++. -+..+ ..+.+.+......-..+|++||+||+|+... ...++ ..+.+.+.
T Consensus 235 ---rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~--------~~~~l~~~ 301 (329)
T TIGR02729 235 ---RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAE--------LLKELKKA 301 (329)
T ss_pred ---hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHH--------HHHHHHHH
Confidence 44999999999843 12122 2334444432111134699999999998754 22222 22233334
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+..++..++.. ..++.+|++.|.+.+
T Consensus 302 ~~~~vi~iSAkt------g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFPISALT------GEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEEEEccC------CcCHHHHHHHHHHHh
Confidence 444444444432 278999999987765
No 32
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=1.2e-18 Score=136.95 Aligned_cols=126 Identities=19% Similarity=0.321 Sum_probs=85.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...++|+++|.+|+|||||+|+|++...........+.|..+..+.. + ..+.+|||||+........ ....+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~-~~~~~~~~ 90 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKE-EKEKWQKL 90 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChh-HHHHHHHH
Confidence 56689999999999999999999987522111224456666655432 2 3799999999876533221 11222221
Q ss_pred Hh---hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 97 IG---MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 97 ~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+. .....+|++++|+|++++++..+..++..+.. .+ .|+++|+||+|+...
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-~~----~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-RG----IPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCH
Confidence 11 12335689999999997888888777776654 23 499999999998754
No 33
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=1.3e-18 Score=154.77 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|++|||||||+|+|++...... ...+++|++.....+. .++..+.+|||||+... ...+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~-~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAE-WGGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEE-ECCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999999874222 2346677777766665 47789999999998642 223444555555556
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-c
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-R 179 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 179 (259)
...+|+++||+|+..+++..+..+.+++.+ .+ +|+++|+||+|..... . ...+ ....+. .
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-~~----~piilVvNK~D~~~~~-~------------~~~~-~~~lg~~~ 136 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRK-SG----KPVILVANKIDGKKED-A------------VAAE-FYSLGFGE 136 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-hC----CCEEEEEECccCCccc-c------------cHHH-HHhcCCCC
Confidence 678899999999998899988888888876 33 4999999999987541 1 1111 122333 3
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
++..++... .++.+|++.+...+..
T Consensus 137 ~~~vSa~~g------~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 137 PIPISAEHG------RGIGDLLDAILELLPE 161 (429)
T ss_pred eEEEeCCcC------CChHHHHHHHHHhcCc
Confidence 444444332 6899999988877644
No 34
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=3.5e-18 Score=130.75 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|++|+|||||+|++++....... ...++|......... ..+..+.+|||||+.+....... ........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~---~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESID-IGGIPVRLIDTAGIRETEDEIEK---IGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEE-eCCEEEEEEECCCcCCCcchHHH---HHHHHHHH
Confidence 57999999999999999999988742222 234455544444443 45678999999998765432111 11111223
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
....+|++++|+|++++.+..+...+.. ..+ .|+++|+||+|+.... .. ....+...
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~~--~~--------------~~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPDS--EL--------------LSLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCcc--cc--------------ccccCCCc
Confidence 3457799999999997666666544443 222 4999999999988651 11 12223344
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
++.+++... .++.+|++.|.+.+
T Consensus 134 ~~~~Sa~~~------~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIAISAKTG------EGLDELKEALLELA 156 (157)
T ss_pred eEEEECCCC------CCHHHHHHHHHHhh
Confidence 455554322 68999999887654
No 35
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.81 E-value=3.2e-18 Score=147.39 Aligned_cols=162 Identities=22% Similarity=0.200 Sum_probs=101.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+++|.+|||||||+|+|++...+.. ...++|.++....+...++..+.+|||||+.... +....+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHH
Confidence 458999999999999999999999874322 2345566666555554467899999999985321 122333344333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
. ....+|++|+|+|++++.+..+. .+...+... +. ...|+++|+||+|+... ..+. .....
T Consensus 264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~------------~~~~~- 325 (351)
T TIGR03156 264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIE------------RLEEG- 325 (351)
T ss_pred H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHH------------HHHhC-
Confidence 2 35578999999999855554433 233444442 21 13499999999998643 1111 11111
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
...++.+++.. ..|+.+|++.|.+.
T Consensus 326 ~~~~i~iSAkt------g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKT------GEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccC------CCCHHHHHHHHHhh
Confidence 11234444432 26899999988654
No 36
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=140.71 Aligned_cols=191 Identities=16% Similarity=0.202 Sum_probs=120.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+.+|+++|++|+|||||||+|+..+.... +..+.+++...+....+++..++||||||++++.....++...+..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 45678899999999999999999996554222 2223333333333333566889999999999987655555555555
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC----------cccHHhhhCCCC
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN----------DETLEDYLGPEC 165 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~----------~~~~~~~~~~~~ 165 (259)
.+ +..|++++++++.++.-..|.+++..+.-... .+++++|+|.+|...+. ...+++++.. .
T Consensus 114 ~l----~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k 185 (296)
T COG3596 114 YL----PKLDLVLWLIKADDRALGTDEDFLRDVIILGL---DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-K 185 (296)
T ss_pred Hh----hhccEEEEeccCCCccccCCHHHHHHHHHhcc---CceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-H
Confidence 54 45589999999987766666666665543222 25999999999987551 1344444432 1
Q ss_pred CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 024985 166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAE 223 (259)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~ 223 (259)
...+.+++.. -.+++..+.. ..=++.+|...+...++.+-..+....+...
T Consensus 186 ~~~~~~~~q~-V~pV~~~~~r------~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~ 236 (296)
T COG3596 186 AEALGRLFQE-VKPVVAVSGR------LPWGLKELVRALITALPVEARSPLAARLQDE 236 (296)
T ss_pred HHHHHHHHhh-cCCeEEeccc------cCccHHHHHHHHHHhCcccccchhhhhhhhH
Confidence 1222233332 1223333311 1258999999999999876665555544333
No 37
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=3e-18 Score=133.14 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=81.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-HHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV-KCI 97 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~-~~~ 97 (259)
.++|+++|.+|+|||||+|+|++........ .+++|......... .++..+.+|||||+.+.......+ +.+. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~-e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFE-YDGKKYTLIDTAGIRRKGKVEEGI-EKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEE-ECCeeEEEEECCCCccccchhccH-HHHHHHHH
Confidence 5789999999999999999999876432221 23334333333333 466789999999987542211111 1111 111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
......+|++++|+|+.++.+.....++..+.. .+ .|+++|+||+|+...
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~----~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILE-EG----KALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-cC----CCEEEEEeccccCCc
Confidence 223457799999999987777666555554433 22 499999999998754
No 38
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=4.8e-18 Score=150.63 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
..|+|+|.+|||||||+|+|++.... ....+.+|..+....+. ..+..+.|+||||+.........+...+.+.+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~-~~~~~f~laDtPGliegas~g~gLg~~fLrhie- 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQ-AGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE- 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEE-ECCeEEEEEECCCCccccchhhHHHHHHHHHHH-
Confidence 47999999999999999999987642 23345566666655554 566789999999998654333344444544443
Q ss_pred cCCCccEEEEEEeCCCC----CCHhHHH-HHHHHHHHhc---------ccccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985 100 AKDGIHAVLLVFSVRNR----FSEEGGA-AIHSLESLFG---------KKVFDYMIVVFTGGNELEDNDETLEDYLGPEC 165 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~----~~~~~~~-~l~~l~~~~~---------~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~ 165 (259)
.+|++|+|+|++.. -...+.. +.+.|..... .-..+|++||+||+|+.+. ..+.+.
T Consensus 236 ---radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~----- 305 (500)
T PRK12296 236 ---RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEF----- 305 (500)
T ss_pred ---hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHH-----
Confidence 45999999999631 1112222 2223433221 1124699999999998643 222221
Q ss_pred CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
++..+...+..++.+++.. . .++.+|+..+.+++....
T Consensus 306 ---l~~~l~~~g~~Vf~ISA~t--g----eGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 306 ---VRPELEARGWPVFEVSAAS--R----EGLRELSFALAELVEEAR 343 (500)
T ss_pred ---HHHHHHHcCCeEEEEECCC--C----CCHHHHHHHHHHHHHhhh
Confidence 2222333344444444432 2 789999999988887643
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.80 E-value=6.1e-18 Score=130.92 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.+|+++|++|||||||+|++++........ +..+.......+.. .....+.+|||||.. .+.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVSVRNKEVRVNFFDLSGHP-----------EYLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEEECCeEEEEEEEECCccH-----------HHHHHHH
Confidence 379999999999999999999887532211 11111111112221 123478999999953 2222333
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc---cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK---KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
..+.++|++|+|+|++++.+... ..++..+.+.... ....|+++|+||+|+....... .........
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS---------EDEGRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC---------HHHHHHHHH
Confidence 45678899999999985433222 3455555553332 1335999999999986321011 112233344
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..+..++..++.. + .++.++++.+.+.+
T Consensus 139 ~~~~~~~~~Sa~~--~----~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFETSACT--G----EGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEEEECCC--C----CCHHHHHHHHHHHH
Confidence 4444444444432 2 68999999876644
No 40
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=1.2e-17 Score=129.90 Aligned_cols=161 Identities=13% Similarity=0.077 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..+|+++|++|||||||+|++++.........+.+. ......+... ....+.+|||||.. .+....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--EFGARMITIDGKQIKLQIWDTAGQE-----------SFRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHH
Confidence 479999999999999999999987752222212222 2221222211 12478999999932 233333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|++++-+..+ ..++..+..... ...|+++|.||+|+....... ....+.+....
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~---------~~~~~~~~~~~ 139 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVS---------YEEGEAFAKEH 139 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCC---------HHHHHHHHHHc
Confidence 445567899999999984333222 233333333222 234999999999987441111 11233444444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+.. +|..++..+ .++.+++..+.+.+.
T Consensus 140 ~~~--~~e~Sa~~~----~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 GLI--FMETSAKTA----SNVEEAFINTAKEIY 166 (168)
T ss_pred CCE--EEEEeCCCC----CCHHHHHHHHHHHHH
Confidence 433 344443333 789999988776654
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.79 E-value=1.6e-17 Score=128.78 Aligned_cols=159 Identities=12% Similarity=0.108 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||+|++.+........ +..+.......+. .++ ..+.+|||||.. .+....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~g~~-----------~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVF-RNDKRVKLQIWDTAGQE-----------RYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence 589999999999999999999877522111 1111112212222 222 478999999943 222233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+.++|++++|+|.++.-+... ..+++.+..... ...|+++|+||+|+.+..... ......+.+..
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~~---------~~~~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDERVVS---------SERGRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCcccccC---------HHHHHHHHHHc
Confidence 445678899999999974422221 234444433221 134899999999986541111 11233444444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+.. +|..++..+ .|+.+|++.+...+.
T Consensus 137 ~~~--~~~~Sa~~~----~gv~~l~~~l~~~~~ 163 (165)
T cd01865 137 GFE--FFEASAKEN----INVKQVFERLVDIIC 163 (165)
T ss_pred CCE--EEEEECCCC----CCHHHHHHHHHHHHH
Confidence 443 344444433 789999999887664
No 42
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=6.3e-18 Score=150.67 Aligned_cols=122 Identities=21% Similarity=0.241 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
++|+++|++|||||||+|+|++....... ..+++|.+....... ..+..+.+|||||+.+.. ..+...+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~-~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAE-WLGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEE-ECCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 58999999999999999999998753332 245677766666555 567899999999987622 1233344444445
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
+...+|++|||+|+..+++..+..+.+++... + .|+++|+||+|...
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~ 123 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPD 123 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCcc
Confidence 56678999999999878888888888887763 3 49999999999653
No 43
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.79 E-value=1.5e-17 Score=128.10 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||+|++++...... ..+..+.+.....+. .++ ..+.+|||||.. .+....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~-----------~~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMY-LEDKTVRLQLWDTAGQE-----------RFRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHH
Confidence 3799999999999999999998876332 223333333333333 233 368999999942 222233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|++++-+..+ ..++..+....+. ..|+++|+||+|+....... ......+.+..
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~---------~~~~~~~~~~~ 135 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVS---------TEEGEKKAKEL 135 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccccCccC---------HHHHHHHHHHh
Confidence 334567799999999985433322 2344444433332 35999999999985431111 11233344444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+..++..++. .+ .++.+++..+.+.
T Consensus 136 ~~~~~~~Sa~--~~----~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIETSAK--AG----HNVKELFRKIASA 160 (161)
T ss_pred CCEEEEEeCC--CC----CCHHHHHHHHHHh
Confidence 4333333333 22 6899999988654
No 44
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.79 E-value=7.2e-18 Score=135.28 Aligned_cols=164 Identities=24% Similarity=0.240 Sum_probs=98.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+.++|+++|++|||||||+|+|++....... ....|.......+...++..+.+|||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 44589999999999999999999998743222 2233444444444433334899999999864322 1122223222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+ ..+..+|++++|+|++++.+..+. .+.+.+...... ..|+++|+||+|+.+. .... .....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~~~--~~~~------------~~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLLDD--EELE------------ERLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccCCh--HHHH------------HHhhc
Confidence 2 234577999999999855544432 334445443221 2599999999998755 1111 11222
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
....++..++... .|+.++++.|...
T Consensus 178 ~~~~~~~~Sa~~~------~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPDAVFISAKTG------EGLDELLEAIEEL 203 (204)
T ss_pred CCCceEEEEcCCC------CCHHHHHHHHHhh
Confidence 2223444444322 6899998887653
No 45
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.79 E-value=1.8e-17 Score=128.72 Aligned_cols=160 Identities=16% Similarity=0.071 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|+|||||++++++.........+.+ .......+. .++ ..+.+|||||.. .+...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~--~~~~~~~~~-~~~~~~~l~l~D~~g~~-----------~~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG--IDFKIRTIE-LDGKKIKLQIWDTAGQE-----------RFRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc--ceEEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHH
Confidence 47999999999999999999998764221111111 122222222 233 478999999943 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+.+..... ........+.
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~---------~~~~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVS---------KEEGEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCC---------HHHHHHHHHH
Confidence 2334567899999999985433322 234444443222 234999999999987531111 1123344454
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+..++..++. .+ .++.+++..+.+.+.
T Consensus 138 ~~~~~~~~Sa~--~~----~~v~~~~~~i~~~~~ 165 (167)
T cd01867 138 YGIKFLETSAK--AN----INVEEAFFTLAKDIK 165 (167)
T ss_pred cCCEEEEEeCC--CC----CCHHHHHHHHHHHHH
Confidence 44444333333 32 689999988876553
No 46
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.79 E-value=1.4e-18 Score=137.68 Aligned_cols=165 Identities=16% Similarity=0.264 Sum_probs=108.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc----------------CCCCCcceeeEEEEEE-eeCCcEEEEEeCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK----------------AGSSGVTKTCEMQRTM-LKDGQVVNVIDTPGLF 80 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~T~~~~~~~~~-~~~~~~~~liDTPG~~ 80 (259)
+.++|+++|+.++|||||+++|++....... ....+.|......... ...+..+.+|||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999854421110 0012344444444333 2467899999999953
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~ 160 (259)
.+...+......+|++|+|+|+..++.....+.+..+.. .+. |++||+||+|+.. ..+++.
T Consensus 82 -----------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~-~~~----p~ivvlNK~D~~~---~~~~~~ 142 (188)
T PF00009_consen 82 -----------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE-LGI----PIIVVLNKMDLIE---KELEEI 142 (188)
T ss_dssp -----------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH-TT-----SEEEEEETCTSSH---HHHHHH
T ss_pred -----------ceeecccceecccccceeeeecccccccccccccccccc-ccc----ceEEeeeeccchh---hhHHHH
Confidence 233333334557799999999998899999888888876 443 8999999999882 344443
Q ss_pred hCCCCCchHHHHHHHcCC----cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 161 LGPECPKPLKEILQLCEN----RRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.++ ....+++..+. .+.++..++..+ .|+.+|++.+.+.++
T Consensus 143 ~~~----~~~~l~~~~~~~~~~~~~vi~~Sa~~g----~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEE----IKEKLLKEYGENGEEIVPVIPISALTG----DGIDELLEALVELLP 187 (188)
T ss_dssp HHH----HHHHHHHHTTSTTTSTEEEEEEBTTTT----BTHHHHHHHHHHHS-
T ss_pred HHH----HHHHhccccccCccccceEEEEecCCC----CCHHHHHHHHHHhCc
Confidence 331 12244444432 233444444333 699999999988775
No 47
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=8.5e-18 Score=131.33 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=92.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||++++++.... .. ..|.......+. .++..+.+|||||... +...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~---~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~ 74 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID--TI---SPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------LRPY 74 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC--Cc---CCccccceEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence 34579999999999999999999987541 11 112222222233 3567899999999532 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++++|+|++++-+... ..++..+... ......|+++|+||+|+... ...+ .+...+..
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~--~~~~---------~~~~~~~~ 142 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGA--LSEE---------EIREALEL 142 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccC--CCHH---------HHHHHhCc
Confidence 2334567899999999985422222 1222222111 01123599999999998654 1111 12222211
Q ss_pred c---CCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 176 C---ENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 176 ~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
. ...+.+|..++..+ .|+.++++++.
T Consensus 143 ~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~ 171 (173)
T cd04154 143 DKISSHHWRIQPCSAVTG----EGLLQGIDWLV 171 (173)
T ss_pred cccCCCceEEEeccCCCC----cCHHHHHHHHh
Confidence 1 22345666666555 79999998864
No 48
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=2.1e-17 Score=154.91 Aligned_cols=187 Identities=19% Similarity=0.166 Sum_probs=117.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+++|++|||||||+|+|++....... ...++|.+.....+. .++..+.+|||||+........ ..+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~-~~~~~~~liDTaG~~~~~~~~~--~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVE-IDGEDWLFIDTAGIKRRQHKLT--GAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEE-ECCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence 4589999999999999999999998742222 234556555444333 5778899999999864322211 11211111
Q ss_pred --hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 98 --GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 98 --~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
..+...+|++++|+|++.+.+..+..++..+.+ .+ .|+++|+||+|+.+. ...+.+.. .+...+..
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~-~~----~piIiV~NK~DL~~~--~~~~~~~~-----~~~~~l~~ 592 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVD-AG----RALVLVFNKWDLMDE--FRRQRLER-----LWKTEFDR 592 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEEchhcCCh--hHHHHHHH-----HHHHhccC
Confidence 234567899999999998888888777776654 23 499999999998754 22221110 11111111
Q ss_pred cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985 176 CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK 226 (259)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
... .++..++ .. ..|+.+|++.+.+.+.....+.-+..+...+++
T Consensus 593 ~~~~~ii~iSA--kt----g~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~ 638 (712)
T PRK09518 593 VTWARRVNLSA--KT----GWHTNRLAPAMQEALESWDQRIPTGKLNAFLGK 638 (712)
T ss_pred CCCCCEEEEEC--CC----CCCHHHHHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 122 2223333 22 379999999999998876655555556555543
No 49
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.78 E-value=2.5e-17 Score=127.72 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
.+|+++|++|||||||++++.+...... .+.|..... ..+. .++ ..+.+|||||.. .+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIE-VNGQKIKLQIWDTAGQE-----------RFRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC----CCcccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence 6899999999999999999997764221 111222221 1122 233 368999999942 2233
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+.++|++|+|+|++++-+... ..++..+..... ...|+++|.||+|+.... .. .......+..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~--~~-------~~~~~~~~~~ 135 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQR--DV-------TYEEAKQFAD 135 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc--Cc-------CHHHHHHHHH
Confidence 33445678899999999985433322 233333333222 235899999999986541 11 0123334444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..+.. ++..++..+ .|+.+++..+...+
T Consensus 136 ~~~~~--~~e~Sa~~~----~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 ENGLL--FLECSAKTG----ENVEDAFLETAKKI 163 (166)
T ss_pred HcCCE--EEEEECCCC----CCHHHHHHHHHHHH
Confidence 44433 444444443 78999887776544
No 50
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.78 E-value=2.3e-17 Score=127.36 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||++++++...... ..+..+.......+. .++ ..+.+|||||.. .+....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~-----------~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQE-----------RFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence 4799999999999999999998875221 112222222222233 233 478899999932 222233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+....... ....+.+.+.+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~~~---------~~~~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQRQVS---------REEAEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccccCCC---------HHHHHHHHHHc
Confidence 344567899999999984433332 2234444332222 35999999999976531011 12233445555
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+..++..+.. .+ .++.++++.|.+.+.+
T Consensus 136 ~~~~~e~Sa~--~~----~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 136 GLPFFETSAK--TN----TNVEEAFEELAREILK 163 (164)
T ss_pred CCeEEEEeCC--CC----CCHHHHHHHHHHHHhh
Confidence 5444444433 32 6899999998876643
No 51
>PRK11058 GTPase HflX; Provisional
Probab=99.78 E-value=1.4e-17 Score=146.68 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.++|+++|.+|||||||+|+|++...+.. ...++|.+.....+.+.+...+.+|||||+... .+......+...+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl- 271 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL- 271 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-
Confidence 46899999999999999999999876422 234556666555555444458899999998542 1223344454443
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHH-HHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGA-AIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.....+|++|+|+|++++.+..... +.+++... +. ...|+++|+||+|+.... . . .... ...+
T Consensus 272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~~~--~-~---------~~~~--~~~~ 335 (426)
T PRK11058 272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLDDF--E-P---------RIDR--DEEN 335 (426)
T ss_pred HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCCch--h-H---------HHHH--HhcC
Confidence 3456889999999998655444432 23344443 21 135999999999986431 0 0 0100 1112
Q ss_pred CcE-EEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 178 NRR-VLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 178 ~~~-~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
... +.+++. .+ .|+.+|++.|.+.+...
T Consensus 336 ~~~~v~ISAk--tG----~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 336 KPIRVWLSAQ--TG----AGIPLLFQALTERLSGE 364 (426)
T ss_pred CCceEEEeCC--CC----CCHHHHHHHHHHHhhhc
Confidence 222 233332 22 78999999999888543
No 52
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.78 E-value=2.8e-17 Score=127.37 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|||||||++++++...... ..++.+.......+. ..+ ..+.+|||||.. .+...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-----------~~~~~ 67 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE-----------RFRTI 67 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------hHHHH
Confidence 36899999999999999999998764221 112222222222222 233 378999999943 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.......+|++|+|+|+++.-+... ..++..+..... ...|+++|+||+|+.... .+. ....+...+.
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~--~~~-------~~~~~~~~~~ 136 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKR--VVD-------YSEAQEFADE 136 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccccc--CCC-------HHHHHHHHHH
Confidence 2334567899999999984332222 234444443221 124999999999976441 110 1123344444
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+..++..++. .+ .++.+++..|.+.+.
T Consensus 137 ~~~~~~~~Sa~--~~----~~v~~~~~~i~~~~~ 164 (166)
T cd01869 137 LGIPFLETSAK--NA----TNVEQAFMTMAREIK 164 (166)
T ss_pred cCCeEEEEECC--CC----cCHHHHHHHHHHHHH
Confidence 44444444443 32 689999998876553
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=1.4e-17 Score=129.04 Aligned_cols=158 Identities=11% Similarity=0.117 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.++|+++|++|+|||||++++.+........ ...+.......+. .++ ..+.+|||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLE-IEGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHH
Confidence 4799999999999999999998765422211 1111222222233 233 378999999932 22233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.......+|++++|+|+++.-+... ..++..+..... ...|+++|+||+|+....... ......+.+.
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~---------~~~~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVL---------FEEACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccC---------HHHHHHHHHH
Confidence 3344567899999999985433322 345555554322 234899999999987541111 1133344444
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
.+. ..++..++..+ .++.++++.+.+
T Consensus 138 ~~~-~~~~e~Sa~~~----~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGM-LAVLETSAKES----QNVEEAFLLMAT 163 (165)
T ss_pred cCC-cEEEEEECCCC----CCHHHHHHHHHH
Confidence 332 22344444433 789999888765
No 54
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.7e-17 Score=147.45 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=122.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~ 96 (259)
..+|+++|.||+|||||+|+|+|..... ..++|+|......... ..+..+.++|+||.++-... ++.+.+++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~-~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-- 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLK-YKGHEIEIVDLPGTYSLTAYSEDEKVARDFL-- 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEE-ecCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence 3579999999999999999999998633 3468888888777766 67778999999999865432 233333322
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
....+|+++.|+|++ .+...-.-.++.+ + +|. |+++++|.+|..... ...-..+++-+..
T Consensus 78 ---l~~~~D~ivnVvDAt-nLeRnLyltlQLl-E-~g~----p~ilaLNm~D~A~~~----------Gi~ID~~~L~~~L 137 (653)
T COG0370 78 ---LEGKPDLIVNVVDAT-NLERNLYLTLQLL-E-LGI----PMILALNMIDEAKKR----------GIRIDIEKLSKLL 137 (653)
T ss_pred ---hcCCCCEEEEEcccc-hHHHHHHHHHHHH-H-cCC----CeEEEeccHhhHHhc----------CCcccHHHHHHHh
Confidence 246789999999998 5555444344433 3 454 999999999987552 2334566677777
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG 227 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (259)
+-++....+.. .+|+++|++.+.+....+.. ++....-++++++
T Consensus 138 GvPVv~tvA~~------g~G~~~l~~~i~~~~~~~~~-~~~~~y~~~ie~~ 181 (653)
T COG0370 138 GVPVVPTVAKR------GEGLEELKRAIIELAESKTT-PREVDYGEEIEEE 181 (653)
T ss_pred CCCEEEEEeec------CCCHHHHHHHHHHhcccccc-ccccccchHHHHH
Confidence 77665555543 37899999999887766654 3333333344433
No 55
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=4.7e-17 Score=130.22 Aligned_cols=165 Identities=21% Similarity=0.229 Sum_probs=95.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh----HHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS----EFVSKE 92 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~----~~~~~~ 92 (259)
...++|+++|++|||||||+|+|++... ... ..+++|...... . . ..+.+|||||++....-. +.+...
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~-~~~~~t~~~~~~--~-~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVG-KRPGVTRKPNHY--D-W--GDFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccC-CCCceeeCceEE--e-e--cceEEEeCCccccccccCHHHHHHHHHH
Confidence 3457999999999999999999998774 222 233445443322 2 1 268999999975433222 222222
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCC-----------CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRF-----------SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
+..++......++++++|+|.+... ...+..++..+.. .+ .|+++|+||+|+... . .+
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~--~~-- 148 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LG----IPPIVAVNKMDKIKN--R--DE-- 148 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cC----CCeEEEEECccccCc--H--HH--
Confidence 2223333445678999999986321 1123344444443 22 499999999998654 1 10
Q ss_pred CCCCCchHHHHHHHcCC--c-----EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 162 GPECPKPLKEILQLCEN--R-----RVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+.++.+..+. . ..++..++ ... |+.+|++.|.+.+.+
T Consensus 149 ------~~~~~~~~~~~~~~~~~~~~~~~~~SA----~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 149 ------VLDEIAERLGLYPPWRQWQDIIAPISA----KKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ------HHHHHHHHhcCCccccccCCcEEEEec----ccC-CHHHHHHHHHHhhcC
Confidence 12223333322 1 11333333 234 899999998877654
No 56
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=8.6e-18 Score=132.66 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=97.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS 86 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 86 (259)
+|+++|.+|+|||||+|+|++......... ..+.|......... ..+..+.+|||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHHH----
Confidence 489999999999999999988765322100 11233333333333 34678999999996421
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCC
Q 024985 87 EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECP 166 (259)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~ 166 (259)
.... ..+...+|++++|+|+..+........+..+.. . ..|+++|+||+|+... ........
T Consensus 76 ---~~~~----~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~----~~~i~iv~nK~D~~~~--~~~~~~~~---- 137 (189)
T cd00881 76 ---SSEV----IRGLSVSDGAILVVDANEGVQPQTREHLRIARE-G----GLPIIVAINKIDRVGE--EDLEEVLR---- 137 (189)
T ss_pred ---HHHH----HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-C----CCCeEEEEECCCCcch--hcHHHHHH----
Confidence 1122 223346799999999986676666666665544 2 2499999999999864 23222111
Q ss_pred chHHHHHHHcC------------CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 167 KPLKEILQLCE------------NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 167 ~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+++.++..+ ....+|..++..+ .++.+++..+...++
T Consensus 138 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g----~gi~~l~~~l~~~l~ 187 (189)
T cd00881 138 -EIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTG----IGVEELLEAIVEHLP 187 (189)
T ss_pred -HHHHHHccccccchhhhhcccCCcceEEEEecccC----cCHHHHHHHHHhhCC
Confidence 2222332221 1223343343333 689999998877653
No 57
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.78 E-value=3.4e-17 Score=126.34 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|++|||||||+|++++.........+.+.+.......+. ..+..+.+|||||.. .+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQE-----------RYRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchH-----------HHHHHHHH
Confidence 689999999999999999999887533121112211111111111 223478999999932 22222233
Q ss_pred cCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
...++|++++|+|+++.-+.. ...++..+...... ..|+++|+||+|+........ .....+....+.
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~~~~---------~~~~~~~~~~~~ 138 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLESKRQVST---------EEAQEYADENGL 138 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccCcCCH---------HHHHHHHHHcCC
Confidence 456789999999997432222 23455555554322 348999999999774311111 123344444443
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+ +..++..+ .++.++++.+.+.+
T Consensus 139 ~~--~~~Sa~~~----~~v~~l~~~l~~~l 162 (163)
T cd01860 139 LF--FETSAKTG----ENVNELFTEIAKKL 162 (163)
T ss_pred EE--EEEECCCC----CCHHHHHHHHHHHh
Confidence 33 44443333 68999999887654
No 58
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=2e-17 Score=155.00 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=111.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+++|++|||||||+|+|++....... ..+++|++....... ..+..+.+|||||+.... +.+...+....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~-~~~~~~~liDT~G~~~~~---~~~~~~~~~~~ 348 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAE-WAGTDFKLVDTGGWEADV---EGIDSAIASQA 348 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEE-ECCEEEEEEeCCCcCCCC---ccHHHHHHHHH
Confidence 4578999999999999999999987642222 246677766665554 467789999999987422 12344455555
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
..++..+|++|||+|++.+++..+..+.+.+.. .+ .|+++|+||+|+.... .. ...... .+
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-~~----~pvIlV~NK~D~~~~~-~~------------~~~~~~-lg 409 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR-AG----KPVVLAVNKIDDQASE-YD------------AAEFWK-LG 409 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECcccccch-hh------------HHHHHH-cC
Confidence 556678899999999987888888878887765 23 4999999999976431 00 111111 12
Q ss_pred C-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 N-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
. .++.. ++..+ .|+.+|++.|.+.++.
T Consensus 410 ~~~~~~i--SA~~g----~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 LGEPYPI--SAMHG----RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCeEEE--ECCCC----CCchHHHHHHHHhccc
Confidence 1 23333 33333 7899999998877654
No 59
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.77 E-value=6.9e-17 Score=126.86 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=95.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-----------CCcEEEEEeCCCCCCCCCCh
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-----------DGQVVNVIDTPGLFDSSADS 86 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-----------~~~~~~liDTPG~~~~~~~~ 86 (259)
...+|+++|++|||||||++++.+.........+.+. ......+... ....+.+|||||..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 74 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGI--DFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------ 74 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccce--EEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence 3479999999999999999999887642211111111 1111111111 12478999999932
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985 87 EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPEC 165 (259)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~ 165 (259)
.+.........++|++++|+|+++.-+..+ ..++..+..... ....|+++|+||+|+.+.. .. .
T Consensus 75 -----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~--~v-------~ 139 (180)
T cd04127 75 -----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQR--QV-------S 139 (180)
T ss_pred -----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcC--cc-------C
Confidence 333344445678899999999985433333 234444433211 1234899999999987531 11 1
Q ss_pred CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
......+....+.. ++..++..+ .++.++++.+.+.+-
T Consensus 140 ~~~~~~~~~~~~~~--~~e~Sak~~----~~v~~l~~~l~~~~~ 177 (180)
T cd04127 140 EEQAKALADKYGIP--YFETSAATG----TNVEKAVERLLDLVM 177 (180)
T ss_pred HHHHHHHHHHcCCe--EEEEeCCCC----CCHHHHHHHHHHHHH
Confidence 12344455554433 344444333 789999998876553
No 60
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.77 E-value=3.1e-17 Score=126.48 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||++++++........ +..+.......+. .++ ..+.+|||||.. .+....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~l~D~~G~~-----------~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIR-VGGKRVKLQIWDTAGQE-----------RFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEE-ECCEEEEEEEEECcchH-----------HHHHhH
Confidence 379999999999999999999877522211 1112112212222 223 478899999943 222222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .. .......+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~--~~-------~~~~~~~~~~~~ 135 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQR--EV-------TFLEASRFAQEN 135 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchhc--cC-------CHHHHHHHHHHc
Confidence 334567899999999985444333 3344444433322 34999999999987531 11 112334445554
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+..++..++ ..+ .++.++++.+..
T Consensus 136 ~~~~~~~Sa--~~~----~~i~~~~~~~~~ 159 (161)
T cd04113 136 GLLFLETSA--LTG----ENVEEAFLKCAR 159 (161)
T ss_pred CCEEEEEEC--CCC----CCHHHHHHHHHH
Confidence 544444443 333 789999988754
No 61
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=3.2e-17 Score=131.25 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee--eEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT--CEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~--~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
.+|+++|.+|||||||++++++...... ...|.. .....+... ....+.+|||||.. .+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~-----------~~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE-----------RFGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCch-----------hhhh
Confidence 4799999999999999999998764221 112222 222222221 12478999999953 2222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc--ccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG--KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
.....+.++|++|+|+|++++.+... ..++..+..... .....|+++|+||+|+...... ....+..+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~---------~~~~~~~~ 136 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK---------DGEQMDQF 136 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc---------CHHHHHHH
Confidence 23345678899999999985443333 233444443221 1133599999999998632101 12234455
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+..+. ..+|..++..+ .++.++++.+.+.+...
T Consensus 137 ~~~~~~-~~~~e~Sak~~----~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 137 CKENGF-IGWFETSAKEG----INIEEAMRFLVKNILAN 170 (201)
T ss_pred HHHcCC-ceEEEEeCCCC----CCHHHHHHHHHHHHHHh
Confidence 555442 12344444333 68999999988776543
No 62
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=5.3e-17 Score=128.94 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||++++.+........ ............+. .++ ..+.||||||-. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVT-VDGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 479999999999999999998876422111 11111111111111 233 478999999932 222222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++|+|+|+++..+... ..++..+.+.... ..|+++|+||+|+.... .. .....+.+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~--~~-------~~~~~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGER--VV-------KREDGERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhcc--cc-------CHHHHHHHHHHc
Confidence 334567899999999985433322 3455555554322 34999999999986431 11 112334455554
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
+..+ +..++..+ .++.+|+..|.+.+.+..
T Consensus 137 ~~~~--~e~Sa~~~----~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 137 GVPF--METSAKTG----LNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCeE--EEEeCCCC----CCHHHHHHHHHHHHHHhc
Confidence 4443 44444333 789999999988876653
No 63
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.77 E-value=2e-17 Score=128.25 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|.+|||||||++++++........++.+ .......... .....+.+|||||..... .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCS-KNICTLQITDTTGSHQFP-----------AMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEEC-CEEEEEEEEECCCCCcch-----------HHHHH
Confidence 5899999999999999999998764222111111 1111111111 123478899999965321 11122
Q ss_pred cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc-ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK-VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
....+|++++|+|++++-+... ..+++.+.+..+.. ...|+++|+||+|+... ..+. ...........+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~-------~~~~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVS-------SNEGAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--Ceec-------HHHHHHHHHHhC
Confidence 3456799999999985544432 45566666654322 33599999999998653 1111 011122223323
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.. +|..++..+ .++.++++.|.++
T Consensus 140 ~~--~~e~SA~~g----~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CA--FMETSAKTN----HNVQELFQELLNL 163 (165)
T ss_pred Cc--EEEeecCCC----CCHHHHHHHHHhc
Confidence 23 445554443 7899999887654
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.77 E-value=2.3e-17 Score=127.44 Aligned_cols=155 Identities=17% Similarity=0.075 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||++++++...........+.+ ....... .++ ..+.+|||||.. .+....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAK-FEGKTILVDFWDTAGQE-----------RFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE--EEEEEEE-ECCEEEEEEEEeCCCch-----------hhhhhh
Confidence 479999999999999999998776422211111111 1111111 233 368899999943 223333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+..+|++|+|+|++++.+..+ ..++..+.+.. ...|+++|+||+|+... . .. ....+.+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~--~-~~---------~~~~~~~~~ 131 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPS--V-TQ---------KKFNFAEKH 131 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchh--H-HH---------HHHHHHHHc
Confidence 445678899999999985544333 34555554422 13599999999997422 1 11 112223333
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+..++ ..++..+ .++.++++.+.+.+.
T Consensus 132 ~~~~~--~~Sa~~~----~gv~~l~~~l~~~~~ 158 (161)
T cd04124 132 NLPLY--YVSAADG----TNVVKLFQDAIKLAV 158 (161)
T ss_pred CCeEE--EEeCCCC----CCHHHHHHHHHHHHH
Confidence 33333 3343333 789999998876554
No 65
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=3.6e-17 Score=125.47 Aligned_cols=156 Identities=20% Similarity=0.235 Sum_probs=94.2
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 024985 24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDG 103 (259)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (259)
|+|.+|+|||||+|++++...... ..+++|.......+. .++..+.+|||||+.+...... ...+....... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEe-eCCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999999863222 234555555544444 4567899999999875432211 11222221111 57
Q ss_pred ccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEE
Q 024985 104 IHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLF 183 (259)
Q Consensus 104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (259)
+|++++|+|+... . ....++..+.. .+ .|+++|+||+|+... .... .....+....+..++..
T Consensus 75 ~d~vi~v~d~~~~-~-~~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~--------~~~~~~~~~~~~~~~~i 137 (158)
T cd01879 75 PDLIVNVVDATNL-E-RNLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIK--------IDLDKLSELLGVPVVPT 137 (158)
T ss_pred CcEEEEEeeCCcc-h-hHHHHHHHHHH-cC----CCEEEEEehhhhccc--ccch--------hhHHHHHHhhCCCeEEE
Confidence 8999999999842 2 22233333433 22 499999999998754 2111 12234444445444444
Q ss_pred eCCCcccccchhHHHHHHHHHHHHH
Q 024985 184 DNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 184 ~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+.... .++.++++.+..+.
T Consensus 138 Sa~~~------~~~~~l~~~l~~~~ 156 (158)
T cd01879 138 SARKG------EGIDELKDAIAELA 156 (158)
T ss_pred EccCC------CCHHHHHHHHHHHh
Confidence 44332 67889888877653
No 66
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.1e-17 Score=125.56 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=118.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
+.-++|+|+|.+|||||-|+-.+.+........++.|+........+. .....+.||||+|- +++...
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQ-----------ERFrti 74 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQ-----------ERFRTI 74 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeecccc-----------HHHhhh
Confidence 455899999999999999999999988755555555554444433322 23348999999993 356666
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
...+++++|+||+|+|++..-+... ..|+..+.+..... .|.++|.||+|+.+... + .....+.+...
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~--v-------~~~~a~~fa~~ 143 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRV--V-------STEEAQEFADE 143 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhhee--c-------CHHHHHHHHHh
Confidence 7788999999999999995544433 45666666644433 39999999999875421 1 12233455555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCC
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQP 215 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~ 215 (259)
.+.+. ++..+++++ .++++.+..+...+....+..
T Consensus 144 ~~~~~-f~ETSAK~~----~NVe~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 144 LGIPI-FLETSAKDS----TNVEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred cCCcc-eeecccCCc----cCHHHHHHHHHHHHHHhcccC
Confidence 55432 667777665 689999988888877765443
No 67
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.77 E-value=6.2e-17 Score=125.27 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|||||||+|++++...... ..+..+.......+. .++ ..+.+|||||.. .+...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~-----------~~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQE-----------RYRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHHH
Confidence 36899999999999999999998774222 122222222222233 233 368999999943 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.......++++|+|+|+++..+..+ ..++..+...... ..|+++|+||+|+....... ......+...
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~~~~~---------~~~~~~~~~~ 137 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVP---------TEEAKAFAEK 137 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccccCC---------HHHHHHHHHH
Confidence 2334567799999999984433332 2344444443221 24999999999986431111 1123333333
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.+..+ +..++..+ .++.++++.+.+.
T Consensus 138 ~~~~~--~~~Sa~~~----~~v~~l~~~l~~~ 163 (165)
T cd01868 138 NGLSF--IETSALDG----TNVEEAFKQLLTE 163 (165)
T ss_pred cCCEE--EEEECCCC----CCHHHHHHHHHHH
Confidence 33333 33343333 7899999887654
No 68
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.77 E-value=5e-17 Score=131.46 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||+|.+++..... ...+..+.+.....+...+ ...+.||||||.. .+....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHHH
Confidence 379999999999999999999876421 1111112222222222222 3578999999942 222223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
...+..+|++|+|+|+++.-+... ..++..+.+.... ....|+++|+||+|+.... .. .......+...
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--~v-------~~~~~~~~~~~ 138 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--TV-------KDDKHARFAQA 138 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc--cc-------CHHHHHHHHHH
Confidence 334668899999999985433332 3455666654432 1223789999999986431 11 11233445555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+..++.. ++..+ .++.++++.+...+..
T Consensus 139 ~~~~~~~i--SAktg----~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESCLV--SAKTG----DRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEEEE--ECCCC----CCHHHHHHHHHHHHHh
Confidence 44434333 33333 7899999998877654
No 69
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.77 E-value=2.1e-17 Score=128.70 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|||||||++++.+... . . ..+|.......+. ..+..+.+|||||.... .......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~-~---~~~T~~~~~~~~~-~~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-M-Q---PIPTIGFNVETVE-YKNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-C-C---cCCcCceeEEEEE-ECCEEEEEEECCCChhc-----------chHHHHH
Confidence 589999999999999999998753 1 1 1223333333333 46678999999996432 1122223
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH---
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL--- 175 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 175 (259)
...+|+++||+|++++-+..+ ...++...+... ...|++||+||+|+... ...++ ++.++..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---------~~~~~~~~~~ 130 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSE--AHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEE---------MTELLSLHKL 130 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHH---------HHHHhCCccc
Confidence 457799999999984422211 223333322211 12499999999998643 22221 1122211
Q ss_pred -cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 176 -CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
++..+.++..++..+ .|+.++++.+.+.+.++
T Consensus 131 ~~~~~~~~~~~Sa~~g----~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 131 CCGRSWYIQGCDARSG----MGLYEGLDWLSRQLVAA 163 (169)
T ss_pred cCCCcEEEEeCcCCCC----CCHHHHHHHHHHHHhhc
Confidence 122334555565544 78999999998766654
No 70
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.77 E-value=3e-17 Score=137.09 Aligned_cols=154 Identities=20% Similarity=0.278 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCChHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADSEFV 89 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~~~~ 89 (259)
.++|+++|++|+|||||+|+|++......... ....|.......... .+| ..+.+|||||+++.... ...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhh
Confidence 47999999999999999999999886544321 123333333222221 334 37999999999876532 222
Q ss_pred HHHHHH--------HHh----------hcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 90 SKEIVK--------CIG----------MAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 90 ~~~~~~--------~~~----------~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
++.+.. ++. .....+|+++|+++.+ .++...|..+++.+.. + .|+++|+||+|++
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~--~----v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK--R----VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc--c----CCEEEEEECCCcC
Confidence 233222 111 1123589999999987 4678888888888764 2 3999999999998
Q ss_pred CCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 151 EDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.. .++..+. ..+++.++..+..++.|...
T Consensus 157 ~~--~e~~~~k-----~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 157 TP--EELKEFK-----QRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CH--HHHHHHH-----HHHHHHHHHcCCceECCCCC
Confidence 65 4444332 25666777777666666553
No 71
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=5.3e-17 Score=143.74 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||+|+|++.....+. ..+++|.+.....+. .++.++.+|||||+.+....-+... + ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~-~~g~~v~l~DTaG~~~~~~~ie~~g--i-~~ 275 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFE-LNGILIKLLDTAGIREHADFVERLG--I-EK 275 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEE-ECCEEEEEeeCCCcccchhHHHHHH--H-HH
Confidence 35689999999999999999999987642222 235566665555454 5788999999999875421111111 1 11
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
....+..+|++++|+|++++.+..+. ++..+.. . ..|+++|+||+|+..
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-~----~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-S----KKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-C----CCCEEEEEECccCCC
Confidence 22345678999999999877666554 4443322 1 249999999999853
No 72
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=6.6e-17 Score=143.80 Aligned_cols=158 Identities=23% Similarity=0.268 Sum_probs=101.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+++|.+|||||||+|+|++....... ..+++|.+.....+. .++.++.+|||||+.++.. .+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~-~~g~~i~l~DT~G~~~~~~---~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHIN-LDGIPLRLIDTAGIRETDD---EVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEE-ECCeEEEEEeCCCCCCCcc---HHHHHHHHHH
Confidence 4579999999999999999999997742222 235566655555444 5778999999999875321 1111101111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
......+|++++|+|++++.+..+..++.. . ...|+++|+||+|+... .... ....
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~---~----~~~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE---L----KDKPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh---c----CCCCcEEEEEhhhcccc--chhh---------------hccC
Confidence 224567799999999986666555433332 1 12499999999998754 1110 1112
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..++.++... ..|+.+|++.|.+.+..
T Consensus 345 ~~~i~iSAkt------g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIRISAKT------GEGIDELREAIKELAFG 371 (449)
T ss_pred CceEEEEeeC------CCCHHHHHHHHHHHHhh
Confidence 2334444432 26899999999988865
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.77 E-value=7.2e-17 Score=128.78 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcce-eeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTK-TCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~-~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|.+|||||||++++++..... . ..+++. ......+. .++ ..+.+|||||........ ..++...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~--~-~~pt~~~~~~~~~i~-~~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~~ 73 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE--E-YIPTEHRRLYRPAVV-LSGRVYDLHILDVPNMQRYPGTA---GQEWMDP 73 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc--c-cCCccccccceeEEE-ECCEEEEEEEEeCCCcccCCccc---hhHHHHH
Confidence 379999999999999999999876422 1 122221 11111222 344 368899999976432111 1122222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc-ccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG-KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.......+|++|+|+|++++.+... ..+++.+.+... .....|+++|+||+|+.... .. ....+..+..
T Consensus 74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~--~~-------~~~~~~~~~~ 144 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR--FA-------PRHVLSVLVR 144 (198)
T ss_pred HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccc--cc-------cHHHHHHHHH
Confidence 2234567899999999985443332 334444444321 12235999999999986431 00 0112223322
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCC
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQ 214 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~ 214 (259)
.. ..+.+|..++..+ .++.+|++.+...+-.+++.
T Consensus 145 ~~-~~~~~~e~Sak~g----~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 145 KS-WKCGYLECSAKYN----WHILLLFKELLISATTRGRS 179 (198)
T ss_pred Hh-cCCcEEEecCCCC----CCHHHHHHHHHHHhhccCCC
Confidence 21 1233455555444 78999999887766555443
No 74
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=1.8e-17 Score=131.99 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC-cccccC-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR-AFKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~-~~~~~~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
.++|+++|.+|+|||||+|+|++.. .+.... ...+.|.......+. ..+..+.+|||||..+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~--- 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHAD--- 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHH---
Confidence 3689999999999999999998631 111111 112333333333333 4567899999999642
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+......++..+|++++|+|++.+.......++..+.. .+ .|+++|+||+|+...
T Consensus 78 --------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-~~----~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 --------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-LG----LKPIVVINKIDRPDA 132 (194)
T ss_pred --------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence 22233334567799999999986555554444444432 22 389999999998643
No 75
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=3e-17 Score=130.37 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=91.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
..+|+++|..++|||||+++|++..... ......+.|.......+. .++..+.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~---- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA---- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH----
Confidence 4689999999999999999998541100 000124555555544444 466789999999953
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCC
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPE 164 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~ 164 (259)
.+...+......+|++++|+|+..+....+.+.+..+.. .+. .++++|+||+|+... ....+.+.
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~~--~~~~~~~~-- 141 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ-VGV---PYIVVFLNKADMVDD--EELLELVE-- 141 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CcEEEEEeCCCCCCc--HHHHHHHH--
Confidence 233333445567899999999987888888888887766 343 147899999998743 33333222
Q ss_pred CCchHHHHHHHcC
Q 024985 165 CPKPLKEILQLCE 177 (259)
Q Consensus 165 ~~~~l~~~~~~~~ 177 (259)
..++.++..++
T Consensus 142 --~~i~~~l~~~g 152 (195)
T cd01884 142 --MEVRELLSKYG 152 (195)
T ss_pred --HHHHHHHHHhc
Confidence 24666666654
No 76
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.76 E-value=6.2e-17 Score=126.16 Aligned_cols=161 Identities=15% Similarity=0.068 Sum_probs=94.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
+|+++|.+|||||||++++++..... .. ..|....+ ..+. ..+ ..+.+|||||.. .+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~-~~---~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK-NY---KATIGVDFEMERFE-ILGVPFSLQLWDTAGQE-----------RFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CC---CCceeeEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHhh
Confidence 79999999999999999999876421 11 12222221 2222 223 479999999943 23333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+.++|++++|+|+++.-+.. ...++..+.+... +...|+++|.||+|+... .... ........+...
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~--~~~~-----~~~~~~~~~~~~ 137 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP--AQYA-----LMEQDAIKLAAE 137 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc--cccc-----ccHHHHHHHHHH
Confidence 344567889999999997432222 2334444333211 112478999999997543 1110 001122334444
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+..++ ..++..+ .++.++++.+..++.+.
T Consensus 138 ~~~~~~--e~Sa~~g----~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 138 MQAEYW--SVSALSG----ENVREFFFRVAALTFEL 167 (170)
T ss_pred cCCeEE--EEECCCC----CCHHHHHHHHHHHHHHc
Confidence 444433 3333333 78999999998887654
No 77
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.76 E-value=2.6e-17 Score=131.29 Aligned_cols=172 Identities=19% Similarity=0.146 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC---cceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|++|+|||||+|+|+|......+..+.+ +|.....+ .......+.+|||||+.+.....+.+.. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~~~l~----~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDDYLE----E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHHHHHH----H
Confidence 6899999999999999999999654332222222 22222221 1112347899999999865443322221 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcc-------cHHhhhCCCCCchH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDE-------TLEDYLGPECPKPL 169 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~-------~~~~~~~~~~~~~l 169 (259)
..+.++|++++|.+ .+++..+..+++.+... +. |+++|+||+|+..+.+. ..++++.+ ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 23457788888754 37888898999988874 43 99999999999643211 12222221 11233
Q ss_pred HHHHHHcC---CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 170 KEILQLCE---NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 170 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...+...+ ..+++.+..... .-++..|.+.+...+++.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~~----~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDPS----DYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCChh----hcChHHHHHHHHHHhhHH
Confidence 33333322 244445544322 257888888888877763
No 78
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.76 E-value=4.9e-17 Score=128.25 Aligned_cols=163 Identities=10% Similarity=0.061 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|.+|||||||++++++...... ..+.+.+............+..+.+|||||.. .+.....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcH-----------hHHHHHH
Confidence 47899999999999999999987664211 11112111111111111134689999999953 2222223
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH---
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ--- 174 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~--- 174 (259)
..+..+|++++|+|+++.-+... ..++..+..... ....|++||+||+|+... ...++ +...+.
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~--~~~~~---------~~~~~~~~~ 138 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA--LSVSE---------VEKLLALHE 138 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc--CCHHH---------HHHHhCccc
Confidence 34567899999999984322221 123333332211 123599999999998643 11111 111111
Q ss_pred HcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 LCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
... ..+.++..++.++ .|+.+|+..|.+.+.
T Consensus 139 ~~~~~~~~~~~~SA~~~----~gi~~l~~~l~~~l~ 170 (183)
T cd04152 139 LSASTPWHVQPACAIIG----EGLQEGLEKLYEMIL 170 (183)
T ss_pred cCCCCceEEEEeecccC----CCHHHHHHHHHHHHH
Confidence 111 1233555555544 799999999877664
No 79
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.76 E-value=1.2e-17 Score=131.10 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc------cC-------CCCCcceeeEEEEEEe----eCCcEEEEEeCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKS------KA-------GSSGVTKTCEMQRTML----KDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~------~~-------~~~~~T~~~~~~~~~~----~~~~~~~liDTPG~~~~ 82 (259)
++|+++|.+|+|||||++++++...... .. ...+.|.........+ ..+..+.+|||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 4799999999999999999987431100 00 0112232222222211 23457889999997532
Q ss_pred CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985 83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~ 162 (259)
......++.++|++|+|+|++.+.+..+...+..+.. . ..|+++|+||+|+... . ..
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-~----~~~iiiv~NK~Dl~~~--~-~~---- 137 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-N----NLEIIPVINKIDLPSA--D-PE---- 137 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-c----CCCEEEEEECCCCCcC--C-HH----
Confidence 1222233456799999999986666555444443322 2 2489999999997543 1 11
Q ss_pred CCCCchHHHHHHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 163 PECPKPLKEILQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 163 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
....++.+..+.. ..+|..++..+ .++.+|++.+...+
T Consensus 138 ----~~~~~~~~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~~~ 176 (179)
T cd01890 138 ----RVKQQIEDVLGLDPSEAILVSAKTG----LGVEDLLEAIVERI 176 (179)
T ss_pred ----HHHHHHHHHhCCCcccEEEeeccCC----CCHHHHHHHHHhhC
Confidence 1122333333321 12444454443 78999999887654
No 80
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.76 E-value=1.6e-17 Score=128.74 Aligned_cols=159 Identities=10% Similarity=0.050 Sum_probs=89.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccC--CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKA--GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
+|+++|++|+|||||+|+|++......+. .....|.......+. .++..+.+|||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE-VGNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence 58999999999999999998754311111 112233333343344 4678999999999642 222223
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCc-ccHHhhhCCCCCchHHHHHHH
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDND-ETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 175 (259)
..+.++|++++|+|+++.-+.. ....++...+.. ....|+++|+||+|+..... ..+.+++. ...+.
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~--------~~~~~ 138 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFE--ESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQ--------DKAEE 138 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHH--HHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhc--------ccccc
Confidence 3456789999999987332111 122233332221 12359999999999765411 11222221 11111
Q ss_pred cC-CcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 176 CE-NRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
.+ ....++..++..+ .|+.+++++|.
T Consensus 139 ~~~~~~~~~~~Sa~~g----~gv~e~~~~l~ 165 (167)
T cd04160 139 IGRRDCLVLPVSALEG----TGVREGIEWLV 165 (167)
T ss_pred ccCCceEEEEeeCCCC----cCHHHHHHHHh
Confidence 11 1223455554443 78999998875
No 81
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.76 E-value=5.3e-17 Score=129.71 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.|+++|.+|||||||++++...... ... .+..+.......+. .++ ..+.+|||||.. .+.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~-~~Ti~~~~~~~~i~-~~~~~v~l~iwDtaGqe-----------~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EAC-KSGVGVDFKIKTVE-LRGKKIRLQIWDTAGQE-----------RFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCch-----------hhHHHHH
Confidence 6899999999999999999876642 111 11111222222233 344 578999999943 2333334
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.++.++|++|+|+|++++-+... ..+++.+...... ..|+++|.||+|+... ..+. ......+.....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~--~~v~-------~~~~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETD--REIS-------RQQGEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccc--cccC-------HHHHHHHHHhcC
Confidence 56778899999999986544443 3445555443322 3499999999998643 1111 111222333321
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+|..++.++ .++.++++.+...+..
T Consensus 137 -~~~~~etSAktg----~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 137 -GMRFCEASAKDN----FNVDEIFLKLVDDILK 164 (202)
T ss_pred -CCEEEEecCCCC----CCHHHHHHHHHHHHHH
Confidence 234556666554 7999999988776644
No 82
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.76 E-value=2.7e-17 Score=126.79 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|||||||++++++...+..... .|.......+. ..+..+.+|||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFE-KGNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEE-ECCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 489999999999999999998753222211 12112222222 4567899999999542 22222334
Q ss_pred CCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc-ccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH--H-
Q 024985 101 KDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG-KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ--L- 175 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~--~- 175 (259)
+.++|++|+|+|++++.+... ..++..+.+... .....|+++|+||+|+... ....++ ...+. .
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~---------~~~l~~~~~ 134 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKI---------TQLLGLENI 134 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHH---------HHHhCCccc
Confidence 567899999999985433221 223333322111 0123599999999998654 111111 11111 1
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
....+.+|..++..+ .|+.++++.|.
T Consensus 135 ~~~~~~~~~~Sa~~g----~gv~~~~~~l~ 160 (162)
T cd04157 135 KDKPWHIFASNALTG----EGLDEGVQWLQ 160 (162)
T ss_pred cCceEEEEEeeCCCC----CchHHHHHHHh
Confidence 112233555555444 79999998875
No 83
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.76 E-value=9.5e-17 Score=124.00 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=98.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHHHHHHh
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEIVKCIG 98 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~~~~~~~~ 98 (259)
|+++|.+|+|||||+|+|++...........+.|....... ....+.+|||||+....... ..+...+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN----VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE----ccCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 78999999999999999995443333333444554443332 22389999999987653321 11222222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-HcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ-LCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 177 (259)
.....++++++|+|.+...+..+..++.++.. .+ .|+++|+||+|.... ........ .+...++ ...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-~~----~~vi~v~nK~D~~~~--~~~~~~~~-----~~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LG----IPFLVVLTKADKLKK--SELAKALK-----EIKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-cC----CCEEEEEEchhcCCh--HHHHHHHH-----HHHHHHHhccC
Confidence 23345688999999986666666667777765 33 399999999998754 22222111 2222332 122
Q ss_pred -CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 178 -NRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
..++.+++... .++.++++.+.++
T Consensus 145 ~~~~~~~Sa~~~------~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIILFSSLKG------QGIDELRALIEKW 169 (170)
T ss_pred CCceEEEecCCC------CCHHHHHHHHHHh
Confidence 23444444332 6789998888764
No 84
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.76 E-value=4.8e-17 Score=126.28 Aligned_cols=156 Identities=17% Similarity=0.090 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|++|||||||+++++....... ...|.......... .....+.+|||||...... .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~ 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------L 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------c
Confidence 3799999999999999999986553111 11222222222211 1234789999999643211 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|+... . . ......+.+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~-~--------~~~~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--K-V--------KAKQITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--c-C--------CHHHHHHHHH
Confidence 1223457899999999985443332 234555554332 4599999999998632 1 1 1111122222
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.. ..+|..++..+ .++.++++.+.+.+.+
T Consensus 132 ~~--~~~~e~Sa~~~----~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KN--LQYYEISAKSN----YNFEKPFLWLARKLLG 160 (166)
T ss_pred cC--CEEEEEeCCCC----CChHHHHHHHHHHHHh
Confidence 22 23444444443 7899999998876654
No 85
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=8.3e-18 Score=131.31 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=90.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCC
Q 024985 24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKD 102 (259)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (259)
++|++|||||||+|+|++.... . ....++|..+...... .+ +..+.+|||||+.......+.+...+.. .+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVE-VPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEE-cCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 5899999999999999998751 1 1233455555444444 45 7899999999986432211111222222 234
Q ss_pred CccEEEEEEeCCCCC------CHhH-HHHHHHHHHHhcc-----cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 103 GIHAVLLVFSVRNRF------SEEG-GAAIHSLESLFGK-----KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 103 ~~~~il~v~d~~~~~------~~~~-~~~l~~l~~~~~~-----~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
++|++++|+|+.+.. +..+ ..+...+...... -...|+++|+||+|+... ....... ..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~-------~~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEEL-------VR 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHH-------HH
Confidence 579999999998442 2222 2233333321110 023599999999998755 2222211 01
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.........++..++. . ..++.+|++.+..+
T Consensus 145 ~~~~~~~~~~~~~Sa~--~----~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVVPISAK--T----EEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEEEEehh--h----hcCHHHHHHHHHhh
Confidence 1111222333333332 2 26899998877553
No 86
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.76 E-value=6e-17 Score=124.81 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|++|||||||+|++++...........+.+.......+. .....+.+|||||... +......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~-----------~~~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQER-----------FRTLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchh-----------hhhhhHH
Confidence 479999999999999999999876522222222222222211111 1224789999999532 2222233
Q ss_pred cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
....+|++++|+|+++.-+... ..++..+.... .....|+++|+||+|+.... ...+ ....+....+.
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~~~~-~~~~---------~~~~~~~~~~~ 137 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKENRE-VTRE---------EGLKFARKHNM 137 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCcccccc-cCHH---------HHHHHHHHcCC
Confidence 4567899999999984433332 23444454432 23345899999999987331 1111 22333444333
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
. ++..++..+ .|+.++++.+.+
T Consensus 138 ~--~~~~Sa~~~----~gi~~~~~~~~~ 159 (161)
T cd01863 138 L--FIETSAKTR----DGVQQAFEELVE 159 (161)
T ss_pred E--EEEEecCCC----CCHHHHHHHHHH
Confidence 3 344443333 689999887654
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.76 E-value=4.3e-17 Score=124.55 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|++|||||||+|++++.........+.+.+......... .....+.+|||||.. .+......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~-----------~~~~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQE-----------RFRSITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChH-----------HHHHHHHH
Confidence 479999999999999999999887633311111222211111111 123578999999953 22223334
Q ss_pred cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
....+|++++|+|+++.-+... ..++..+..... ...|+++|+||+|...+.... ...++.+....+.
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~ 137 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVS---------TEEAQQFAKENGL 137 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccccccccc---------HHHHHHHHHHcCC
Confidence 4567899999999984322221 234444444321 134999999999986321111 2234445555444
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
.++..++.. + .++.+++..|.
T Consensus 138 ~~~~~sa~~--~----~~i~~~~~~i~ 158 (159)
T cd00154 138 LFFETSAKT--G----ENVEELFQSLA 158 (159)
T ss_pred eEEEEecCC--C----CCHHHHHHHHh
Confidence 444444432 2 68899888764
No 88
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.76 E-value=6.4e-17 Score=124.42 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||+|++++...... . .+++......... .++ ..+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-Y--DPTIEDSYRKQVV-IDGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC-c--CCcchheEEEEEE-ECCEEEEEEEEECCCCcc-----------hHHHH
Confidence 5899999999999999999998764221 1 1111111111112 333 3577899999542 12222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+..+|++++|+|++++-+..+ ..++..+.+... ....|+++|+||+|+.... .. ......+.+..
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~-~~---------~~~~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAART-VS---------SRQGQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccce-ec---------HHHHHHHHHHh
Confidence 234456799999999984433222 233444444221 2235999999999986531 11 11233334444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+.. ++..++..+ .|+.++++.+.+.
T Consensus 136 ~~~--~~~~Sa~~~----~gi~~l~~~l~~~ 160 (162)
T cd04138 136 GIP--YIETSAKTR----QGVEEAFYTLVRE 160 (162)
T ss_pred CCe--EEEecCCCC----CCHHHHHHHHHHH
Confidence 433 344444433 7899999887654
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.76 E-value=6.7e-17 Score=124.92 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCcceeeEE--EEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRR-AFKSKAGSSGVTKTCEM--QRTML--KDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~T~~~~~--~~~~~--~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
.+|+++|.+|||||||++++.+.. .+.... ..|..... ..+.. .....+.+|||||.. .+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNY---LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccC---CCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence 379999999999999999998542 222221 11221111 11211 223589999999932 222
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.........+|++++|+|+++..+... ..+++.+.... ...|+++|+||+|+.+. ..+. ....+.+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~-------~~~~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVT-------DAQAQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCC-------HHHHHHHH
Confidence 333344567899999999985433222 23444444321 23599999999998644 1111 01112222
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
...+.. ++..++..+ .|+.++++.+.+.
T Consensus 135 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~ 162 (164)
T cd04101 135 QANQLK--FFKTSALRG----VGYEEPFESLARA 162 (164)
T ss_pred HHcCCe--EEEEeCCCC----CChHHHHHHHHHH
Confidence 232323 344444333 7899999887764
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.76 E-value=7.1e-17 Score=124.16 Aligned_cols=159 Identities=12% Similarity=0.071 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.+|+++|++|+|||||+|++++...... .....+.......+... ....+.+|||||.. .+.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQE-----------RYHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchH-----------HHHHhhH
Confidence 3799999999999999999998765221 11122222222222211 12368999999942 1122222
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.....+|++++|+|++++-+... ..+++.+...... ..|+++|+||+|+... ..+. ...+..+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~-------~~~~~~~~~~~~ 136 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVS-------KSEAEEYAKSVG 136 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCC-------HHHHHHHHHHcC
Confidence 33457899999999985433322 2344455544332 3599999999998743 1110 112334444444
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..++..+.. .+ .++.++++.+...+
T Consensus 137 ~~~~~~s~~--~~----~gi~~~~~~l~~~~ 161 (162)
T cd04123 137 AKHFETSAK--TG----KGIEELFLSLAKRM 161 (162)
T ss_pred CEEEEEeCC--CC----CCHHHHHHHHHHHh
Confidence 444444433 22 68999999886643
No 91
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.76 E-value=9e-17 Score=124.05 Aligned_cols=159 Identities=21% Similarity=0.156 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|+|||||++++++.... .. ..+++......... .++ ..+.+|||||..+. ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TD--YDPTIEDSYTKQCE-IDGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-cc--cCCCccceEEEEEE-ECCEEEEEEEEECCCCcch-----------hHH
Confidence 469999999999999999999987642 11 11222211111122 333 36889999996432 112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.......+|++++|+|+++.-+... ..++..+.+... ....|+++|+||+|+.... ... ......+.+.
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~--~~~-------~~~~~~~~~~ 136 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQR--KVS-------REEGQELARK 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccc--eec-------HHHHHHHHHH
Confidence 2233456799999999984433222 233334433221 1234999999999986431 110 1123334444
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+.. +|..++..+ .++.++++.+...+
T Consensus 137 ~~~~--~~~~Sa~~~----~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIP--YIETSAKDR----LNVDKAFHDLVRVI 163 (164)
T ss_pred cCCc--EEEeeCCCC----CCHHHHHHHHHHhh
Confidence 3333 344444333 78999998876543
No 92
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.76 E-value=5.4e-17 Score=126.27 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
+..+|+++|.+|||||||++++...... .. . .|.......+. ..+..+.+|||||.. .+....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~--~-~t~g~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TT--I-PTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cc--c-CCcccceEEEE-ECCEEEEEEECCCCH-----------HHHHHH
Confidence 3579999999999999999999865532 11 1 12222222222 456789999999953 222223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l~~~~~ 174 (259)
...+.++|++|||+|+++..+... ...++.+..... ...|+++|+||+|+.... ...+++++.. ..
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~ 139 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TR 139 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Cc
Confidence 345678899999999985432222 223333332211 235999999999976431 0112221110 00
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
.....+.+|..++.++ .|+.+++..|.
T Consensus 140 ~~~~~~~~~~~SAk~g----~gv~~~~~~l~ 166 (168)
T cd04149 140 IRDRNWYVQPSCATSG----DGLYEGLTWLS 166 (168)
T ss_pred cCCCcEEEEEeeCCCC----CChHHHHHHHh
Confidence 0112345666666655 78999998774
No 93
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.75 E-value=1.3e-16 Score=127.51 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=95.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..++|+++|++|||||||++++.+........ +..........+. ..+ ..+.||||||... +..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~-----------~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVE-INGERVKLQIWDTAGQER-----------FRT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEE-ECCEEEEEEEEeCCCchh-----------HHH
Confidence 35899999999999999999999876421111 1111112112222 223 4688999999431 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
........+|++++|+|++++-+... ..++..+.... ...|++||+||+|+.... ... ......+..
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~--~~~-------~~~~~~~~~ 138 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERK--VVE-------TEDAYKFAG 138 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc--ccC-------HHHHHHHHH
Confidence 22334567899999999985433332 23444444322 234899999999987531 110 112333444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.. +|..++..+ .++.++++.|...+..
T Consensus 139 ~~~~~--~~e~Sa~~~----~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 139 QMGIS--LFETSAKEN----INVEEMFNCITELVLR 168 (199)
T ss_pred HcCCE--EEEEECCCC----cCHHHHHHHHHHHHHH
Confidence 44433 444444443 7899999988776643
No 94
>PLN03110 Rab GTPase; Provisional
Probab=99.75 E-value=1.5e-16 Score=128.76 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|||||||++++++........ +..........+. .++ ..+.||||||.. .+..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~-~~~~~~~l~l~Dt~G~~-----------~~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQ-VEGKTVKAQIWDTAGQE-----------RYRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence 45799999999999999999999877522211 1111122222222 233 478999999942 2333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..++++|+|+|+++.-+... ..++..+...... ..|+++|+||+|+... ..+. ....+.+..
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~--~~~~-------~~~~~~l~~ 145 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHL--RSVA-------EEDGQALAE 145 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccc--cCCC-------HHHHHHHHH
Confidence 33445668899999999985433333 3445555543322 3499999999997643 1111 112334444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.. ++..++..+ .++.++++.+...+.+
T Consensus 146 ~~~~~--~~e~SA~~g----~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 KEGLS--FLETSALEA----TNVEKAFQTILLEIYH 175 (216)
T ss_pred HcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence 43333 444444443 6788888888666544
No 95
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.75 E-value=1.8e-16 Score=148.46 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~~~~~~~~ 96 (259)
..+|+++|.+|||||||+|+|+|.... . ...+++|.......+. .++..+.+|||||.++..... ....+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-v-gn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-V-GNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 368999999999999999999998752 2 2356777766665554 567799999999998643211 1112222221
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|+++ +.. ...+...+.+ .+ .|+++|+||+|..+. ... ....+.+.+..
T Consensus 80 -~l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e-~g----iPvIvVlNK~Dl~~~--~~i--------~id~~~L~~~L 141 (772)
T PRK09554 80 -YILSGDADLLINVVDASN-LER-NLYLTLQLLE-LG----IPCIVALNMLDIAEK--QNI--------RIDIDALSARL 141 (772)
T ss_pred -HHhccCCCEEEEEecCCc-chh-hHHHHHHHHH-cC----CCEEEEEEchhhhhc--cCc--------HHHHHHHHHHh
Confidence 112357899999999984 332 2334444444 33 499999999998744 111 22344555666
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+.+++.++.... +|+.+|++.+.+...
T Consensus 142 G~pVvpiSA~~g------~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPVIPLVSTRG------RGIEALKLAIDRHQA 168 (772)
T ss_pred CCCEEEEEeecC------CCHHHHHHHHHHhhh
Confidence 666655555432 689999999888764
No 96
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.75 E-value=1.1e-16 Score=123.66 Aligned_cols=159 Identities=17% Similarity=0.110 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||+|++++..... .. .+++......... .++ ..+.+|||||..... ...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~-----------~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DY--DPTIEDSYRKQIE-IDGEVCLLDILDTAGQEEFS-----------AMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-cc--CCchhhhEEEEEE-ECCEEEEEEEEECCCcccch-----------HHH
Confidence 379999999999999999999876422 11 1222211111122 233 468899999965321 111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|++++-+... ..+...+.+... ....|+++|+||+|+....... ......+.+..
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~---------~~~~~~~~~~~ 135 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVS---------TEEGKELARQW 135 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEc---------HHHHHHHHHHc
Confidence 223446699999999984433222 233344443322 1235999999999986531111 11233444444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+..+ |..++..+ .++.++++.+.+.+.
T Consensus 136 ~~~~--~~~Sa~~~----~~i~~l~~~l~~~~~ 162 (164)
T smart00173 136 GCPF--LETSAKER----VNVDEAFYDLVREIR 162 (164)
T ss_pred CCEE--EEeecCCC----CCHHHHHHHHHHHHh
Confidence 4333 44444333 789999998876554
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=1.3e-16 Score=125.59 Aligned_cols=159 Identities=12% Similarity=0.067 Sum_probs=96.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|||||||++++....... . ..|.......+. ..+..+.+|||||.. .+...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~----~pt~g~~~~~~~-~~~~~~~i~D~~Gq~-----------~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVE-YKNISFTVWDVGGQD-----------KIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-c----cCCcceeEEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence 455899999999999999999998655321 1 122222232333 456789999999942 22333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+.++|++|||+|+++..+..+ ....+...+... ...|++||+||+|+... ...+++ ...+.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~l~ 144 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEI---------TDKLG 144 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHH---------HHHhC
Confidence 3445678899999999984432221 233333333211 13599999999997644 222211 11111
Q ss_pred H--cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 L--CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~--~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
. ... .++++..++.++ +|+.+++++|.+.+.
T Consensus 145 l~~~~~~~~~~~~~Sa~~g----~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 LHSLRQRHWYIQSTCATSG----EGLYEGLDWLSNNIA 178 (181)
T ss_pred ccccCCCceEEEeccCCCC----CCHHHHHHHHHHHHh
Confidence 1 111 234556666555 799999999877654
No 98
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.75 E-value=2.8e-17 Score=130.63 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC---cccc--cCCCCCcceeeEEEEEEee-------------CCcEEEEEeCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRR---AFKS--KAGSSGVTKTCEMQRTMLK-------------DGQVVNVIDTPGLFD 81 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~---~~~~--~~~~~~~T~~~~~~~~~~~-------------~~~~~~liDTPG~~~ 81 (259)
.+|+++|++|+|||||+++|++.. .+.. .....+.|.........+. .+..+.+|||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 379999999999999999998731 0000 0111234444443333321 25689999999963
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
.+...+......+|++++|+|+..+.+..+.+.+.... ..+ .|+++|+||+|+... ...+...
T Consensus 80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~----~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILC----KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcC----CCEEEEEECcccCCH--HHHHHHH
Confidence 12222223345669999999998666666554444332 233 399999999998754 2222211
Q ss_pred CCCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 162 GPECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.. ..+.+...+...+. .+.++..++..+ .|+.+|++.+...+.
T Consensus 143 ~~-~~~~l~~~~~~~~~~~~~vi~iSa~~g----~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFKNSPIIPVSAKPG----GGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcCCCCEEEEeccCC----CCHHHHHHHHHhccc
Confidence 10 01112222221111 222333343333 789999999887654
No 99
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.75 E-value=1e-16 Score=123.67 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||++++.+...... . .+++.......+. .++ ..+.+|||||.... ....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK-Y--DPTIEDSYRKQIE-VDGQQCMLEILDTAGTEQF-----------TAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCchhhhEEEEEE-ECCEEEEEEEEECCCcccc-----------chHH
Confidence 6899999999999999999997664211 1 1222111111122 333 36778999996432 1122
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+.++|++++|+|+++.-+... ..+++.+.+... ....|+++|+||+|+.... ... ......+.+..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~~-------~~~~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDER--VVS-------REEGQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--eec-------HHHHHHHHHHc
Confidence 234567899999999985433332 334445544322 1235999999999986431 110 11223344444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+.. ++..++..+ .++.+++..+.+.
T Consensus 137 ~~~--~~~~Sa~~~----~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCP--FYETSAKSK----INVDEVFADLVRQ 161 (163)
T ss_pred CCe--EEEecCCCC----CCHHHHHHHHHHh
Confidence 433 444444433 7899999887654
No 100
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=1.3e-16 Score=126.42 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||+|++++........ +..+.......+. .++ ..+.+|||||.. .+....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~g~~-----------~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVY-IENKIIKLQIWDTNGQE-----------RFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHhhH
Confidence 479999999999999999999877522111 1111222222222 233 367899999943 222223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+.++|++++|+|++++-+... ..++..+...... ..|+++|+||+|+.+.. .+. ....+.+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~~--~v~-------~~~~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNNK--VVD-------SNIAKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcccc--cCC-------HHHHHHHHHHc
Confidence 345668899999999985433322 2344444443222 24899999999987441 111 11222333333
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+..++..++ ..+ .++.+++..+...+..
T Consensus 136 ~~~~~evSa--~~~----~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 136 NIPFFETSA--KQS----INVEEAFILLVKLIIK 163 (188)
T ss_pred CCeEEEEeC--CCC----CCHHHHHHHHHHHHHH
Confidence 333433333 333 6899998887766543
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.75 E-value=1.1e-16 Score=125.37 Aligned_cols=159 Identities=11% Similarity=0.087 Sum_probs=92.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|.+|||||||++.+...... . .. .|......... ..+..+.+|||||... +....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~---~~-~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~ 74 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-T---TI-PTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLW 74 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-C---cC-CccccceEEEE-ECCEEEEEEECCCChh-----------hHHHH
Confidence 3589999999999999999999654431 1 11 22223233333 4567899999999532 22233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
...+.++|++|||+|++++.+.. ...+++...+... ...|++||+||+|+... ...+++... + . ...
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~-~~~ 143 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----L-G-LHS 143 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----h-C-ccc
Confidence 34467889999999998442221 1222333322211 12499999999997643 111111110 0 0 011
Q ss_pred cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 176 CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+.. .++++..++..+ .|+.+++++|.+.+
T Consensus 144 ~~~~~~~~~~~Sa~~g----~gv~e~~~~l~~~~ 173 (175)
T smart00177 144 IRDRNWYIQPTCATSG----DGLYEGLTWLSNNL 173 (175)
T ss_pred cCCCcEEEEEeeCCCC----CCHHHHHHHHHHHh
Confidence 112 233555555544 79999999987654
No 102
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=7.1e-17 Score=128.10 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
+|+++|.+|||||||++++++..... .. .+++......... .++. .+.+|||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~-~~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE-TY--DPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cC--CCchHhhEEEEEE-ECCEEEEEEEEECCCchh-----------hHHHHH
Confidence 48999999999999999998765411 11 1111111111122 3343 588999999532 122222
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
..+.++|++|+|+|+++..+... ..++..+...... ....|+++|+||+|+... ..+. ......+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~-------~~~~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVS-------TEEGAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccC-------HHHHHHHHHHh
Confidence 34567799999999985443332 3455555543321 133599999999998643 1111 11223344444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+.. +|..++..+ .++.+++..+.+.+...
T Consensus 137 ~~~--~~e~SAk~~----~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 137 GCE--FIEASAKTN----VNVERAFYTLVRALRQQ 165 (190)
T ss_pred CCE--EEEecCCCC----CCHHHHHHHHHHHHHHh
Confidence 443 445554444 78999999988766544
No 103
>PLN03118 Rab family protein; Provisional
Probab=99.75 E-value=1.3e-16 Score=128.60 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=95.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|++|||||||++++++... .... +..+.......+. .++ ..+.||||||... +.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~~-~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~ 76 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--EDLA-PTIGVDFKIKQLT-VGGKRLKLTIWDTAGQER-----------FR 76 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC--CCcC-CCceeEEEEEEEE-ECCEEEEEEEEECCCchh-----------hH
Confidence 3458999999999999999999998764 2221 1111122222222 233 4789999999542 12
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHH-H-HHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGG-A-AIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~-~-~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
......+..+|++|+|+|++++-+.... . +...+.. +......|+++|+||+|+.... ... ......+
T Consensus 77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~~--~i~-------~~~~~~~ 146 (211)
T PLN03118 77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESER--DVS-------REEGMAL 146 (211)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccC--ccC-------HHHHHHH
Confidence 2223345677999999999854333332 1 2222222 2222234899999999986441 110 1122233
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
....+. .+|..++... .++.++++.+...+.+.
T Consensus 147 ~~~~~~--~~~e~SAk~~----~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 147 AKEHGC--LFLECSAKTR----ENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHcCC--EEEEEeCCCC----CCHHHHHHHHHHHHHhh
Confidence 333333 3444444433 78999999998877553
No 104
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.75 E-value=1.2e-16 Score=123.64 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||+++++.... ... ..+++.......+. .++ ..+.+|||||... +....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~--~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEK--YDPTIEDSYRKQVE-VDGQQCMLEILDTAGTEQ-----------FTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-Ccc--cCCcchheEEEEEE-ECCEEEEEEEEECCCccc-----------chhHH
Confidence 6899999999999999999986543 111 11222211111222 333 3677999999642 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+.++|++++|+|.++.-+... ..++..+.+... ....|+++|+||+|+.... ... ......+.+..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~~-------~~~~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER--VVG-------KEQGQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhcc--EEc-------HHHHHHHHHHh
Confidence 234556799999999874433322 334444443221 2235999999999986531 110 11233444444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+.. ++..++..+ .++.+++..+.+.+
T Consensus 137 ~~~--~~~~Sa~~~----~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCA--FLETSAKAK----INVNEIFYDLVRQI 162 (164)
T ss_pred CCE--EEEeeCCCC----CCHHHHHHHHHHHh
Confidence 443 344444333 78999999887654
No 105
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.74 E-value=3e-16 Score=124.23 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=101.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|..|||||||+.++.+... .... .+..+.......+. .++ ..+.+|||||.. .+..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTIL-LDGRRVKLQLWDTSGQG-----------RFCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHH
Confidence 457999999999999999999987653 1111 11112222222222 334 478899999953 2333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+.++|++|+|+|++++.+... ..+++.+.... . ..|++||.||.|+.... .+ .....+.+.+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~~~--~v-------~~~~~~~~a~ 138 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAFKR--QV-------ATEQAQAYAE 138 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchhcc--CC-------CHHHHHHHHH
Confidence 33445678899999999986554443 34556665432 2 35999999999986431 11 1123445555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
..+.. +|..++..+ .++.++++.+...+....+
T Consensus 139 ~~~~~--~~e~SAk~g----~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 139 RNGMT--FFEVSPLCN----FNITESFTELARIVLMRHG 171 (189)
T ss_pred HcCCE--EEEecCCCC----CCHHHHHHHHHHHHHHhcC
Confidence 54444 444454443 7899999988876654433
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=1.4e-16 Score=123.69 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=91.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|||||||+|++.+...... . +...............+..+.+|||||..... ... ...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-V--PRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANL----AAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-C--CCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHH----hhh
Confidence 799999999999999999998764221 1 11111111111111234578999999965321 111 222
Q ss_pred CCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 101 KDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
+..+|++++|+|++++.+... ..++..+... .. ..|+++|+||+|+.+. ...... ...+..+......
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~--~~pviiv~nK~Dl~~~--~~~~~~-----~~~~~~~~~~~~~ 137 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRL-GV--KVPIILVGNKSDLRDG--SSQAGL-----EEEMLPIMNEFRE 137 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEEchhcccc--cchhHH-----HHHHHHHHHHHhc
Confidence 467899999999985544433 2355555543 22 3599999999998754 111000 0122223332222
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
...++..++..+ .++.+++..+.+.+
T Consensus 138 ~~~~~e~Sa~~~----~~v~~lf~~~~~~~ 163 (166)
T cd01893 138 IETCVECSAKTL----INVSEVFYYAQKAV 163 (166)
T ss_pred ccEEEEeccccc----cCHHHHHHHHHHHh
Confidence 112444444433 78999999887754
No 107
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.74 E-value=5.2e-17 Score=125.86 Aligned_cols=159 Identities=15% Similarity=0.155 Sum_probs=90.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK 101 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (259)
|+++|.+|||||||++++.+........ .|.......+. ..+..+.+|||||.... .......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~----pt~g~~~~~i~-~~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV----PTTGFNSVAIP-TQDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc----ccCCcceEEEe-eCCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 7899999999999999999875422111 12111222222 45678999999995421 11222345
Q ss_pred CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985 102 DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRV 181 (259)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (259)
.++|++|||+|++++.+... ...++.+........|+++|+||+|+... ....++... ..+..+....+ +.
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~---~~~~~~~~~~~--~~ 136 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE---LELEPIARGRR--WI 136 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH---hCChhhcCCCc--eE
Confidence 67799999999984432221 12233333222234599999999998654 233322110 01222333323 33
Q ss_pred EEeCCCc--ccccchhHHHHHHHHHH
Q 024985 182 LFDNKTK--DAATRTEQVGKLISLVN 205 (259)
Q Consensus 182 ~~~~~~~--~~~~~~~~i~eLl~~i~ 205 (259)
+|..++. .++...+++.++++.+.
T Consensus 137 ~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 137 LQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEEeeecCCCChhHHHHHHHHHHHHh
Confidence 4444433 34455689999888654
No 108
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.74 E-value=2.6e-16 Score=122.91 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..+|+++|.+|||||||++.+.+....... ..|....+. .+. .++ ..+.+|||||.. .+..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~ 65 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQAR-IDNEPALLDILDTAGQA-----------EFTA 65 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEE-ECCEEEEEEEEeCCCch-----------hhHH
Confidence 368999999999999999999877642211 112111111 122 334 368899999953 2223
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++++|+|++++.+.... .+...+.+... ....|+++|+||+|+... ..+. ......+.+
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~-------~~~~~~~a~ 135 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVT-------TEEGRNLAR 135 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccC-------HHHHHHHHH
Confidence 333455678999999999866655542 34455554321 223599999999997643 1111 112233444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.. +|..++..+ .++.+++..+...+.+
T Consensus 136 ~~~~~--~~e~Sa~~~----~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 136 EFNCP--FFETSAALR----HYIDDAFHGLVREIRR 165 (172)
T ss_pred HhCCE--EEEEecCCC----CCHHHHHHHHHHHHHH
Confidence 44433 444444443 6899999988765543
No 109
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.74 E-value=2.6e-16 Score=122.39 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||+|++++........ ...+.+.....+. ..+ ..+.+|||||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVT-VDDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHhHH
Confidence 379999999999999999999876422211 1112122222222 233 3577999999431 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....++|++|+|+|++++.+... ..+...+...... ....|+++|+||+|+..+..... ...+.+.+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST---------KKAQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCH---------HHHHHHHH
Confidence 334567899999999974433222 1233333222221 11359999999999874311111 12334444
Q ss_pred HcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+ ..++..++.. + .|+.++++.+.+.+.+
T Consensus 138 ~~~~~~~~~~Sa~~--~----~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 138 SNGNIPYFETSAKE--A----INVEQAFETIARKALE 168 (172)
T ss_pred HcCCceEEEEECCC--C----CCHHHHHHHHHHHHHh
Confidence 444 2333333332 2 6899999988776544
No 110
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.74 E-value=4.5e-16 Score=119.95 Aligned_cols=155 Identities=19% Similarity=0.127 Sum_probs=90.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
+|+++|.+|+|||||+|++++..... .. .+..........+.. .....+.+|||||.. .+....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DY-KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CC-CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHhH
Confidence 79999999999999999999876422 11 111112221112221 123479999999932 222333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+..+|++++|+|++++-+... ..++..+.... ...|+++|+||+|+.... .+. ......+.+..
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~--~v~-------~~~~~~~~~~~ 136 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQA--VIT-------NEEAEALAKRL 136 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccccc--CCC-------HHHHHHHHHHc
Confidence 345668899999999984433222 23333333322 234999999999987541 110 11234455555
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+.+++..++. .+ .++.++++.|..
T Consensus 137 ~~~~~~~Sa~--~~----~~v~~l~~~l~~ 160 (162)
T cd04106 137 QLPLFRTSVK--DD----FNVTELFEYLAE 160 (162)
T ss_pred CCeEEEEECC--CC----CCHHHHHHHHHH
Confidence 5544444433 22 689999888754
No 111
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=1.9e-16 Score=134.31 Aligned_cols=169 Identities=22% Similarity=0.180 Sum_probs=114.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..+.+.|+++|.+|+|||||+|+|++...+... ....|-++....+...++..+.+-||.||...- +..+...|..
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFks 264 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKS 264 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHH
Confidence 346789999999999999999999998875433 344555555555555668899999999998642 3445556665
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.+.. ...+|++|+|+|++++.... -....+.|.++ |.. ..|+++|+||+|++.+ .. .+..+..
T Consensus 265 TLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~~--~~-----------~~~~~~~ 328 (411)
T COG2262 265 TLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLED--EE-----------ILAELER 328 (411)
T ss_pred HHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccCc--hh-----------hhhhhhh
Confidence 5543 35789999999998552222 23445555553 222 2599999999999876 21 1122222
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+ ..++++.... .|+..|++.|.+.+...
T Consensus 329 ~~~-~~v~iSA~~~------~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 329 GSP-NPVFISAKTG------EGLDLLRERIIELLSGL 358 (411)
T ss_pred cCC-CeEEEEeccC------cCHHHHHHHHHHHhhhc
Confidence 222 3455555432 68999999999988854
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.74 E-value=1.5e-16 Score=125.38 Aligned_cols=162 Identities=11% Similarity=0.068 Sum_probs=95.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||++++...... .. . .|.......+. ..+..+.+|||||.. .+...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~--~-~T~~~~~~~~~-~~~~~~~l~D~~G~~-----------~~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVV--TT--I-PTIGFNVETVE-YKNLKFTMWDVGGQD-----------KLRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--C-CccccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence 34589999999999999999999755432 11 1 12222233333 456789999999953 22223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
...++.++|++|||+|+++.-+..+ ..+.+.+.+... ...|++||+||.|+... ...+++... +. ..
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~ 146 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LH 146 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CC
Confidence 3445678899999999984322211 222333332221 23599999999997543 112211110 00 01
Q ss_pred HcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+.. .++++..++.++ .|+.++++.|.+.+..
T Consensus 147 ~~~~~~~~~~~~Sa~tg----~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 147 SVRQRNWYIQGCCATTA----QGLYEGLDWLSANIKK 179 (182)
T ss_pred cccCCcEEEEeeeCCCC----CCHHHHHHHHHHHHHH
Confidence 1222 234556665554 7999999998876654
No 113
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.74 E-value=3.9e-16 Score=121.58 Aligned_cols=163 Identities=15% Similarity=0.090 Sum_probs=92.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-H
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV-K 95 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~-~ 95 (259)
..+|+++|++|+|||||++++++....... .+..........+. .++ ..+.+|||||... +. .
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~ 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVE-IDGERIKVQLWDTAGQER-----------FRKS 67 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEE-ECCeEEEEEEEeCCChHH-----------HHHh
Confidence 368999999999999999999876642211 11111111112222 233 4789999999431 11 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
........+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+... ..+. ......+.+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~--~~~~-------~~~~~~~~~ 137 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLREQ--IQVP-------TDLAQRFAD 137 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchhh--cCCC-------HHHHHHHHH
Confidence 22344568899999999985544433 23444444322 1223599999999997644 1110 112233444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.....++..++... ....++.+++..+...+
T Consensus 138 ~~~~~~~e~Sa~~~---~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFETSAKDP---SENDHVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEEEeccCC---cCCCCHHHHHHHHHHHh
Confidence 44334444443321 11367888887765543
No 114
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.74 E-value=1.7e-16 Score=126.06 Aligned_cols=162 Identities=14% Similarity=0.181 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
.+|+++|.+|+|||||++++++....... ...|....+ ..+. .++. .+.+|||||... +..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~-----------~~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSER-----------YEA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcC---cccceeeEEEEEEEE-ECCEEEEEEEEECCCchh-----------hhh
Confidence 37999999999999999999987642211 112222111 1122 3333 567999999532 112
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+.++|++++|+|+++.-+... ..+++.+... . ...|+++|+||+|+.... ..... .....+..+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~--~~~piilv~nK~Dl~~~~-~~~~~----v~~~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-E--EHCKIYLCGTKSDLIEQD-RSLRQ----VDFHDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-C--CCCCEEEEEEcccccccc-cccCc----cCHHHHHHHHH
Confidence 22334567899999999984433222 3345555442 1 235999999999976431 01110 00112334444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+..++ ..++..+ .++.+|++.+.+.+..
T Consensus 138 ~~~~~~~--~~Sa~~~----~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 138 EIKAQHF--ETSSKTG----QNVDELFQKVAEDFVS 167 (193)
T ss_pred HcCCeEE--EEeCCCC----CCHHHHHHHHHHHHHH
Confidence 4444433 3333332 7899999998876643
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=1.5e-16 Score=126.11 Aligned_cols=170 Identities=11% Similarity=0.022 Sum_probs=94.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
......+|+++|++|||||||++++.+..... . ..|.......+. .++..+.+|||||... +.
T Consensus 15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~--~---~~T~~~~~~~i~-~~~~~~~l~D~~G~~~-----------~~ 77 (190)
T cd00879 15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ--H---VPTLHPTSEELT-IGNIKFKTFDLGGHEQ-----------AR 77 (190)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHhcCCCcc--c---CCccCcceEEEE-ECCEEEEEEECCCCHH-----------HH
Confidence 34456899999999999999999999876421 1 112222223333 4567899999999431 11
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchH--
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPL-- 169 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l-- 169 (259)
........++|++++|+|+++.-+.. ....++...+.. ....|+++|+||+|+.... ...+++++........
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKG 155 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccc
Confidence 22223456779999999997432111 122233332221 1235999999999986431 1222222221000000
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
-.+.........+|..++..+ +|+.++++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~----~gv~e~~~~l~~~ 189 (190)
T cd00879 156 VSLKVSGIRPIEVFMCSVVKR----QGYGEAFRWLSQY 189 (190)
T ss_pred ccccccCceeEEEEEeEecCC----CChHHHHHHHHhh
Confidence 000011112233556565544 7999999998764
No 116
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=3.1e-17 Score=126.29 Aligned_cols=145 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|++|+|||||+|+|.|..... ..|..+.+ ... .+|||||.+.... .....+ ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v~~------~~~--~~iDtpG~~~~~~---~~~~~~----~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAVEF------NDK--GDIDTPGEYFSHP---RWYHAL----IT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccceEEEE------CCC--CcccCCccccCCH---HHHHHH----HH
Confidence 379999999999999999999765311 12222211 111 2699999864321 122222 23
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN- 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (259)
...++|++++|+|++...+..... +... +. ..|+++++||+|+... ..+ .+.+.+...+.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~~----~~~~-~~--~~~ii~v~nK~Dl~~~---~~~---------~~~~~~~~~~~~ 121 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPAG----LLDI-GV--SKRQIAVISKTDMPDA---DVA---------ATRKLLLETGFE 121 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCHH----HHhc-cC--CCCeEEEEEccccCcc---cHH---------HHHHHHHHcCCC
Confidence 356789999999998554333222 2221 11 2489999999997532 111 23344444443
Q ss_pred -cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 179 -RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+++.+++. ++ +++.+|++.+.+.+.+
T Consensus 122 ~p~~~~Sa~--~g----~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 122 EPIFELNSH--DP----QSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCEEEEECC--Cc----cCHHHHHHHHHHhchh
Confidence 34444443 32 7999999999888744
No 117
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.73 E-value=2.9e-16 Score=127.27 Aligned_cols=162 Identities=13% Similarity=0.025 Sum_probs=96.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
....+|+++|.+|||||||+++++..........+.+.+... ..+.. .....+.+|||||... +..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~-----------~~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEK-----------FGG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchh-----------hhh
Confidence 566899999999999999999987665321111112222111 11111 1235899999999542 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++|+|+|++++.+... ..+++.+.... ...|+++|+||+|+... ... ...+ .+..
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~--~v~--------~~~~-~~~~ 143 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR--QVK--------AKQV-TFHR 143 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhc--cCC--------HHHH-HHHH
Confidence 22334668899999999986544433 34455554432 23499999999997532 100 1112 2222
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+ ..+|..++..+ .++.+++..+.+.+.+.
T Consensus 144 ~~~--~~~~e~SAk~~----~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 144 KKN--LQYYEISAKSN----YNFEKPFLYLARKLAGD 174 (219)
T ss_pred hcC--CEEEEcCCCCC----CCHHHHHHHHHHHHHcC
Confidence 222 33556665554 78999999887766543
No 118
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.73 E-value=5.4e-17 Score=122.58 Aligned_cols=139 Identities=18% Similarity=0.245 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|++|||||||+|++++.... ...|... . ..+ .+|||||.... ...+.+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~~-----~-~~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQAV-----E-YND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cccceeE-----E-EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 7999999999999999999987641 1122211 1 112 58999996321 11222222234
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-c
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-R 179 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 179 (259)
+.++|++++|+|++++.+..+..+++. ++ .|+++|+||+|+.+.. ... ....+..+..+. .
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~~~-~~~---------~~~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAEAD-VDI---------ERAKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCCcc-cCH---------HHHHHHHHHcCCCc
Confidence 678899999999986665544333322 22 3999999999986431 111 122344444443 3
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
++..++. .+ .++.+|++.+.
T Consensus 122 ~~~~Sa~--~~----~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFEISSV--DE----QGLEALVDYLN 141 (142)
T ss_pred EEEEecC--CC----CCHHHHHHHHh
Confidence 3333333 32 68999988763
No 119
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=3.1e-16 Score=121.75 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=91.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|||||||++++++....... ....+.......+. ..+ ..+.+|||||.. .+..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~-----------~~~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-IKGEKIKLQIWDTAGQE-----------RFRS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence 3489999999999999999999866542211 11111122222222 334 368899999943 2222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
........+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+... ..+.. ...+.+.+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~--~~i~~-------~~~~~~~~ 140 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAER--REVSQ-------QRAEEFSD 140 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cccCH-------HHHHHHHH
Confidence 22334567899999999974433222 2344445443332 2489999999998644 11111 11222333
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.....+ +..++..+ .++.++++.|...
T Consensus 141 ~~~~~~--~~~Sa~~~----~gv~~l~~~i~~~ 167 (169)
T cd04114 141 AQDMYY--LETSAKES----DNVEKLFLDLACR 167 (169)
T ss_pred HcCCeE--EEeeCCCC----CCHHHHHHHHHHH
Confidence 323333 33333332 6899999988764
No 120
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.73 E-value=1.9e-16 Score=122.01 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|||||||++++...... .. . +|.......+. .....+.+|||||.. .+.......
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~---~-pt~g~~~~~~~-~~~~~~~l~D~~G~~-----------~~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TT---I-PTIGFNVETVE-YKNISFTVWDVGGQD-----------KIRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-cc---C-CCCCcceEEEE-ECCEEEEEEECCCCH-----------hHHHHHHHH
Confidence 7999999999999999999655432 11 1 12222222223 456789999999953 222233345
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc-C
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC-E 177 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 177 (259)
+.++|++|||+|+++..+... ..+++.+..... ...|+++|+||+|+... ...++.... + . +... .
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~-~~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----L-G-LHSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----h-C-ccccCC
Confidence 678899999999984322221 222233322211 12599999999998643 112211110 0 0 0011 1
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
...+++..++..+ .|+.++++.|.
T Consensus 134 ~~~~~~~~Sak~g----~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWYIQATCATSG----DGLYEGLDWLS 157 (159)
T ss_pred CCEEEEEeeCCCC----CCHHHHHHHHh
Confidence 2344566666555 78999998774
No 121
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.73 E-value=1.5e-16 Score=144.97 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=104.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+++|+++|++++|||||+++|.+..+... ...+.|.....+.+.+.++..+.||||||.... ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 568999999999999999999998765332 234566666665555434448999999996532 2222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
...+..+|++++|+|++++...+..+.+..+.. .+ .|+++++||+|+.....+.+...+.. ........+
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN----VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 345567899999999987777777666665443 33 39999999999864321222222210 001112223
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
....++..++..+ .|+.+|++.+..
T Consensus 223 ~~~~~v~iSAktG----eGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTIFVPVSALTG----DGIDELLDMILL 247 (587)
T ss_pred CCceEEEEECCCC----CChHHHHHhhhh
Confidence 2233455554444 789999988754
No 122
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.73 E-value=3.8e-16 Score=123.44 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|.+|+|||||++++++...... ...|....+. .+...++ ..+.+|||||.. .+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQE-----------EYDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCch-----------hHHHH
Confidence 4799999999999999999998765221 1112222221 1221112 378999999943 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
......++|++|+|+|++++.+.... .++..+... . ...|+++|+||+|+... ......+ .......+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~--~~~~~~v---~~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRKD--KNLDRKV---TPAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhhC--ccccCCc---CHHHHHHHHH
Confidence 33356788999999999855444332 233333331 2 23499999999998643 1111111 1123344454
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.. .+|..++..+ .++.+++..+...+..
T Consensus 138 ~~~~~-~~~e~Sa~~~----~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 138 KQGAF-AYLECSAKTM----ENVEEVFDTAIEEALK 168 (187)
T ss_pred HcCCc-EEEEccCCCC----CCHHHHHHHHHHHHHh
Confidence 44431 2455555444 7899999988776554
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=1.7e-16 Score=125.33 Aligned_cols=164 Identities=9% Similarity=0.042 Sum_probs=92.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|||||||+|.+.+...... .+|.......+. ..+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELA-IGNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999998754211 112222222232 4567899999999542 1222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC-CcccHHhhhCCCCCchHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELED-NDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~-~~~~~~~~~~~~~~~~l~~~~ 173 (259)
...++..+|+++||+|+++.-+... ....+.+.+.. ....|+++|+||+|+... +.+.+.+.+.- .. .....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l--~~-~~~~~ 152 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAE--SKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL--TN-TTGSK 152 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHH--HHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCC--Cc-ccccc
Confidence 2345568899999999974321111 11122222211 123599999999997543 11223322221 00 00000
Q ss_pred HHcC-CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 174 QLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
...+ ....+|..++..+ .|+.++++++.+
T Consensus 153 ~~~~~~~~~i~~~Sa~~~----~g~~~~~~wl~~ 182 (184)
T smart00178 153 GKVGVRPLEVFMCSVVRR----MGYGEGFKWLSQ 182 (184)
T ss_pred cccCCceeEEEEeecccC----CChHHHHHHHHh
Confidence 0001 2334566665444 789999998754
No 124
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.2e-17 Score=123.89 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=110.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+|+|.+|||||||+-++.....-....++.+.........+. .....+.||||.|.. .+....
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQE-----------Ry~sla 71 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQE-----------RYHSLA 71 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCcc-----------cccccc
Confidence 35799999999999999998887666433223333333222222211 123578899999943 466667
Q ss_pred hhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
+.++++++++|+|+|+++.-+.. -+.|++.|.+..++++ -+.+|.||+|+.+...-. .+..+...+.-
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~---------~~ea~~yAe~~ 140 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVE---------FEEAQAYAESQ 140 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhccccc---------HHHHHHHHHhc
Confidence 78999999999999999544433 3677777777555322 566799999998641111 12333444443
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
+ ..+|..+++++ .++++++..|.+.++...
T Consensus 141 g--ll~~ETSAKTg----~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 141 G--LLFFETSAKTG----ENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred C--CEEEEEecccc----cCHHHHHHHHHHhccCcc
Confidence 3 45666666665 899999999999887653
No 125
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.73 E-value=2.5e-16 Score=121.62 Aligned_cols=154 Identities=13% Similarity=0.134 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceee--EEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC--EMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~--~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
+|+++|++|+|||||++.+++....... ..|... ....+. ..+ ..+.+|||||.. .+...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~-----------~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQE-----------RYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------hHHhh
Confidence 7999999999999999999987652221 122222 112222 233 368899999943 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.......+|++++|+|++++-+... ..+++.+..... ...|+++|.||.|+... ..+. ......+.+.
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~--~~v~-------~~~~~~~~~~ 134 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQK--RQVG-------DEQGNKLAKE 134 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc--cCCC-------HHHHHHHHHH
Confidence 3334568899999999985433332 234444433321 23499999999998644 1110 1123334444
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.+.. ++..++..+ .++.+++..|.+.
T Consensus 135 ~~~~--~~e~Sa~~~----~~v~~~f~~l~~~ 160 (161)
T cd04117 135 YGMD--FFETSACTN----SNIKESFTRLTEL 160 (161)
T ss_pred cCCE--EEEEeCCCC----CCHHHHHHHHHhh
Confidence 4433 355555444 6899999887653
No 126
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.73 E-value=4.2e-16 Score=120.17 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|||||||++++++....... .+.+.. .+......+ ...+.+|||||... +....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY---EPTKAD-SYRKKVVLDGEDVQLNILDTAGQED-----------YAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcccc---CCcchh-hEEEEEEECCEEEEEEEEECCChhh-----------hhHHH
Confidence 47999999999999999999976642211 111111 111111123 24789999999542 12222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|+++.-+.. -..++..+..... ....|+++|+||+|+....... ......+...+
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~---------~~~~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVS---------SEEAANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccC---------HHHHHHHHHHh
Confidence 33455679999999987432221 1233333333211 2345999999999987521011 11233444444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+..+ +..++..+ .|+.+|++.+.+.+.
T Consensus 136 ~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~ 162 (164)
T cd04139 136 GVPY--VETSAKTR----QNVEKAFYDLVREIR 162 (164)
T ss_pred CCeE--EEeeCCCC----CCHHHHHHHHHHHHH
Confidence 4444 34443333 789999998876654
No 127
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.73 E-value=2.4e-17 Score=122.39 Aligned_cols=141 Identities=21% Similarity=0.306 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+|+|++|||||||+++|.+.+. ....|+.+.+. + .+|||||-+-- ...+.+.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~-----~----~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYY-----D----NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEec-----c----cEEECChhhee-------CHHHHHHHHH
Confidence 5899999999999999999998774 12234444432 1 36999996521 2245555555
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
....+|+|++|.|++.+.+...-.+. ..|. +|+|-|+||+|+..++ ..+ ...++.++.++..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f~----~pvIGVITK~Dl~~~~-~~i---------~~a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFA----SMFN----KPVIGVITKIDLPSDD-ANI---------ERAKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhh----cccC----CCEEEEEECccCccch-hhH---------HHHHHHHHHcCCC
Confidence 56688999999999854332222222 2233 4999999999988331 222 2455667777765
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
.. |..++.++ +|+++|.+.|.
T Consensus 122 ~i-f~vS~~~~----eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-FEVSAVTG----EGIEELKDYLE 142 (143)
T ss_pred Ce-EEEECCCC----cCHHHHHHHHh
Confidence 43 44443333 79999999875
No 128
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=6.6e-16 Score=124.51 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|||||||+|++++...... ..++.+.+.....+...++ ..+.+|||||.. .+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----------RFRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcch-----------hHHHH
Confidence 36899999999999999999998764221 1121112222222222223 478999999943 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++|+|+|++++-+... ..++..+.+.... ...|++||.||+|+.... .+ .......+.+.
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~--~v-------~~~~~~~~~~~ 138 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQR--QV-------TREEAEKLAKD 138 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccccc--cc-------CHHHHHHHHHH
Confidence 2335667899999999985433222 2344444433221 224788999999986531 11 11123445555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+.. ++..++..+ .++.++++.|.+.+.+.
T Consensus 139 ~~~~--~~e~Sak~g----~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 139 LGMK--YIETSARTG----DNVEEAFELLTQEIYER 168 (211)
T ss_pred hCCE--EEEEeCCCC----CCHHHHHHHHHHHHHHH
Confidence 5533 444444433 78999999888766543
No 129
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.73 E-value=3.9e-16 Score=122.98 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
.+|+++|.+|+|||||++++++..... .. ..|....+ ..+. .++ ..+.+|||+|.. .+..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~---~~T~g~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DY---IQTLGVNFMEKTIS-IRGTEITFSIWDLGGQR-----------EFIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CC---CCccceEEEEEEEE-ECCEEEEEEEEeCCCch-----------hHHH
Confidence 379999999999999999998776421 11 11222121 1222 333 478999999943 2333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCc-ccHHhhhCCCCCchHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDND-ETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~-~~~~~~~~~~~~~~l~~~~ 173 (259)
....+..++|++++|+|++++.+..+ ..++..+...... ..| ++|+||+|+..... ...+.. ......+.
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~~~~~~~~~~~~-----~~~~~~~a 136 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLFADLPPEEQEEI-----TKQARKYA 136 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhccccccchhhhhh-----HHHHHHHH
Confidence 34456778999999999985544433 2455555442221 235 68899999864210 011101 11233444
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+..+.. ++..++..+ .++.++++.+.+.+.+
T Consensus 137 ~~~~~~--~~e~SAk~g----~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 137 KAMKAP--LIFCSTSHS----INVQKIFKIVLAKAFD 167 (182)
T ss_pred HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHh
Confidence 444433 344444443 7899999988776643
No 130
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=3.3e-16 Score=119.42 Aligned_cols=119 Identities=23% Similarity=0.185 Sum_probs=76.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 024985 24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDG 103 (259)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (259)
++|++|+|||||+|+|++....... ...+.|............+..+.+|||||+.+...........+. .....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~----~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELAR----RVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHH----HHHHh
Confidence 5899999999999999988754322 233444444444333223678999999999876543332222222 23346
Q ss_pred ccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 104 IHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+|++++|+|+..........+...... ...|+++|+||+|+...
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCCh
Confidence 699999999986555554432222222 23499999999998865
No 131
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.72 E-value=1.4e-16 Score=122.60 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=87.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|++|||||||+|++++...... . .|.......+....+..+.+|||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 489999999999999999998875321 1 1222222223323456899999999532 22222234
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE- 177 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 177 (259)
+..+|++++|+|+++..+... ...++...+... ...|+++|+||+|+... ...++.... . .+ ...+.
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~--~~---~~~~~~ 134 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRR-F--KL---KKYCSD 134 (160)
T ss_pred hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHH-c--CC---cccCCC
Confidence 557799999999984432221 122222222111 23599999999998543 112211110 0 00 01111
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
..+.++..++..+ +|+.++++.|..
T Consensus 135 ~~~~~~~~Sa~~~----~gv~~~~~~i~~ 159 (160)
T cd04156 135 RDWYVQPCSAVTG----EGLAEAFRKLAS 159 (160)
T ss_pred CcEEEEecccccC----CChHHHHHHHhc
Confidence 1223455555443 799999988753
No 132
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.72 E-value=2e-16 Score=126.85 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEee--------------------------------
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLK-------------------------------- 66 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~-------------------------------- 66 (259)
.+|+++|+.|+|||||+.+|.+... ........+.|..+.+....+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3799999999999999999987632 1111112233333332222211
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
....+.||||||.. .+...+......+|++++|+|++.+ ........+..+.. .+. .|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 12679999999932 3334444455677999999999853 34444455555533 232 37899999
Q ss_pred CCCCCCCCcccHHhhhCCCCCchHHHHHHHc---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 146 GGNELEDNDETLEDYLGPECPKPLKEILQLC---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
|+|+... ......+. .++..+... ...++.+++ ..+ .++.+|++.+.+.+++
T Consensus 146 K~Dl~~~--~~~~~~~~-----~i~~~~~~~~~~~~~i~~vSA--~~g----~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYE-----QIKKFVKGTIAENAPIIPISA--QLK----YNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHH-----HHHHHHhccccCCCcEEEEeC--CCC----CCHHHHHHHHHHhCCC
Confidence 9998754 22222111 223333221 122333333 332 7899999999887654
No 133
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.72 E-value=3.3e-16 Score=122.50 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=90.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|++|+|||||++++++...... ..|......... ..+..+.+|||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIV-YKNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEE-ECCeEEEEEECCCCHH-----------HHHHHH
Confidence 57999999999999999999987664221 122222233333 4567899999999542 222223
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-HH
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL-QL 175 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 175 (259)
..+.++|+++||+|++++-+... ..+.+.+.+... ...|+++|+||+|+... ...+++.. .+. ..
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~--~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~--------~l~~~~ 145 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPL--TKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISE--------SLGLTS 145 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHH--------HhCccc
Confidence 34567899999999984422211 112222222111 23599999999998643 11221111 000 01
Q ss_pred c-CCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 176 C-ENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
+ ...+.++..++..+ .|+.++++.|.
T Consensus 146 ~~~~~~~~~~~SA~~g----~gi~e~~~~l~ 172 (174)
T cd04153 146 IRDHTWHIQGCCALTG----EGLPEGLDWIA 172 (174)
T ss_pred ccCCceEEEecccCCC----CCHHHHHHHHh
Confidence 1 12234566665544 78999998875
No 134
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.72 E-value=2.3e-16 Score=122.64 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|||||||+|.+.+.. ..... .|.......+. ..+..+.+|||||.. .+......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLR-LDKYEVCIFDLGGGA-----------NFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEE-ECCEEEEEEECCCcH-----------HHHHHHHHH
Confidence 48999999999999999999762 22211 12112222233 456789999999942 222223345
Q ss_pred CCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 101 KDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
+..+|+++||+|+++..+..+ ..++..+.... .....|+++|+||.|+... ....+.... ..+..+.+..+..
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~--~~~~~i~~~---~~l~~~~~~~~~~ 137 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNA--LLGADVIEY---LSLEKLVNENKSL 137 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCC--CCHHHHHHh---cCcccccCCCCce
Confidence 678899999999984432222 22333332211 1123599999999998654 323332221 0122222222334
Q ss_pred EEEEeCCCccc--ccchhHHHHHHHHHH
Q 024985 180 RVLFDNKTKDA--ATRTEQVGKLISLVN 205 (259)
Q Consensus 180 ~~~~~~~~~~~--~~~~~~i~eLl~~i~ 205 (259)
+.++..++..+ .....|+.+.++++.
T Consensus 138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 138 CHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 45555554432 011257999888875
No 135
>PTZ00369 Ras-like protein; Provisional
Probab=99.72 E-value=5e-16 Score=123.14 Aligned_cols=162 Identities=18% Similarity=0.127 Sum_probs=94.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||++++.+........ .|....+......++ ..+.+|||||..+. ..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 68 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYD----PTIEDSYRKQCVIDEETCLLDILDTAGQEEY-----------SA 68 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CchhhEEEEEEEECCEEEEEEEEeCCCCccc-----------hh
Confidence 45899999999999999999999776422111 111111111111233 36789999996532 11
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++++|+|++++-+... ..++..+.+... ....|+++|+||+|+... ..+. ......+.+
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~i~-------~~~~~~~~~ 138 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE--RQVS-------TGEGQELAK 138 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccC-------HHHHHHHHH
Confidence 22234557899999999985543222 334444444322 123499999999997543 1111 111223334
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.. +|..++..+ .|+.+++..+.+.+..
T Consensus 139 ~~~~~--~~e~Sak~~----~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 139 SFGIP--FLETSAKQR----VNVDEAFYELVREIRK 168 (189)
T ss_pred HhCCE--EEEeeCCCC----CCHHHHHHHHHHHHHH
Confidence 44433 344444443 7899999988766543
No 136
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.72 E-value=5.6e-16 Score=120.53 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=92.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|+|||||++++++........ +..+.......+. .++ ..+.+|||||.. .+..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLE-VDGHFVTLQIWDTAGQE-----------RFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC--CceeeEEEEEEEE-ECCeEEEEEEEeCCChH-----------HHHH
Confidence 45799999999999999999999776422211 1111111111222 233 367899999932 2333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
........+|++++|+|++++-+... ..+...+...... ....|+++|+||+|+.... .. ...++++
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~---------~~~~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VS---------TEEAQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cC---------HHHHHHH
Confidence 33445678899999999985433322 2333434332211 1234999999999976321 11 1234444
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
.+..+.. .+|..++..+ .++.++++.+.+
T Consensus 140 ~~~~~~~-~~~e~Sa~~~----~~v~~~~~~~~~ 168 (170)
T cd04116 140 CRENGDY-PYFETSAKDA----TNVAAAFEEAVR 168 (170)
T ss_pred HHHCCCC-eEEEEECCCC----CCHHHHHHHHHh
Confidence 4444422 2344444433 688888887654
No 137
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.72 E-value=9.7e-17 Score=133.96 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=90.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCChHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADSEFV 89 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~~~~ 89 (259)
.++|+|+|.+|+|||||||+|++......... ....|.......... .++ ..+.||||||+++.. ++...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence 47999999999999999999999876554311 111222233322222 222 379999999998763 33322
Q ss_pred HHHHHHHH--------hh---------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 90 SKEIVKCI--------GM---------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 90 ~~~~~~~~--------~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
+..+..++ .. ....+|++||+++++ .++.+.|...++.|.+. .++|.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 33333222 11 124679999999986 57999998888877653 38999999999998
Q ss_pred CCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985 152 DNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT 187 (259)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (259)
. +++..+.. .++..++..+-.++.|....
T Consensus 157 ~--~el~~~k~-----~i~~~l~~~~I~~f~f~~~~ 185 (281)
T PF00735_consen 157 P--EELQAFKQ-----RIREDLEENNIKIFDFPEDD 185 (281)
T ss_dssp H--HHHHHHHH-----HHHHHHHHTT--S-------
T ss_pred H--HHHHHHHH-----HHHHHHHHcCceeecccccc
Confidence 7 66665533 56677777777776666543
No 138
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=2.8e-16 Score=120.76 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|||||||++++++... ... ..|......... ..+..+.+|||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETVE-YKNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEEE-ECCEEEEEEECCCChhh-----------HHHHHHH
Confidence 589999999999999999998873 111 112222223233 45678999999995421 1122234
Q ss_pred CCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH---c
Q 024985 101 KDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL---C 176 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 176 (259)
+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+... ...++.. ..+.. .
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~---------~~~~~~~~~ 131 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELI---------EKLGLEKIL 131 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHH---------HhhChhhcc
Confidence 456799999999984322111 222332222111 123599999999998764 2222211 11111 1
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
.....++..++..+ .|+.++++.|.
T Consensus 132 ~~~~~~~~~Sa~~~----~gv~~~~~~l~ 156 (158)
T cd00878 132 GRRWHIQPCSAVTG----DGLDEGLDWLL 156 (158)
T ss_pred CCcEEEEEeeCCCC----CCHHHHHHHHh
Confidence 12233444444443 78999888764
No 139
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.71 E-value=4.7e-16 Score=120.07 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|+|||||+++++........ .++........+. .++. .+.||||||..... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY---DPTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFA-----------SMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCchhheEEEEEE-ECCEEEEEEEEECCCccccc-----------chH
Confidence 68999999999999999999877652221 1111111112222 2333 57889999964321 112
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+.++|++++|+|++++-+..+ ..++..+.+... ....|+++|+||+|+.... ... ......+.+..
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~--~~~-------~~~~~~~~~~~ 136 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESER--EVS-------SAEGRALAEEW 136 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcC--ccC-------HHHHHHHHHHh
Confidence 223456799999999985433222 344555554322 1235999999999976431 111 11122333333
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+.. ++..++..+ .++.+++..+...
T Consensus 137 ~~~--~~~~Sa~~~----~~v~~l~~~l~~~ 161 (163)
T cd04176 137 GCP--FMETSAKSK----TMVNELFAEIVRQ 161 (163)
T ss_pred CCE--EEEecCCCC----CCHHHHHHHHHHh
Confidence 333 344444333 7899999887653
No 140
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=3.3e-16 Score=138.14 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=94.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc--------------cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS--------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
..+..+|+++|++++|||||+|+|++...... .....+.|.......+. .++..+.|+||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~- 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA- 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChH-
Confidence 45678999999999999999999997522110 01124555555444433 356789999999943
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDY 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~ 160 (259)
.+...+......+|++++|+|+..++..++.+.+..+.. ++. | +++|+||+|+.+. ....+.
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~-~g~----~~iIvvvNK~D~~~~--~~~~~~ 149 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ-VGV----PNIVVFLNKEDQVDD--EELLEL 149 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CEEEEEEEccCCCCH--HHHHHH
Confidence 233333344557799999999987888888888887765 443 6 7789999999754 333333
Q ss_pred hCCCCCchHHHHHHHcC
Q 024985 161 LGPECPKPLKEILQLCE 177 (259)
Q Consensus 161 ~~~~~~~~l~~~~~~~~ 177 (259)
+. ..+..++..++
T Consensus 150 ~~----~~l~~~l~~~~ 162 (409)
T CHL00071 150 VE----LEVRELLSKYD 162 (409)
T ss_pred HH----HHHHHHHHHhC
Confidence 22 24666666655
No 141
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.71 E-value=7.5e-16 Score=124.54 Aligned_cols=167 Identities=18% Similarity=0.105 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|.+|||||||++++++..... . ..|....+.... .....+.||||||.... ......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~---~~Tig~~~~~~~-~~~~~l~iwDt~G~e~~-----------~~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--T---VSTVGGAFYLKQ-WGPYNISIWDTAGREQF-----------HGLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--C---CCccceEEEEEE-eeEEEEEEEeCCCcccc-----------hhhHHH
Confidence 479999999999999999999877522 1 112222222222 23457899999996432 112223
Q ss_pred cCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcc---------cHHh-hhCCCCCch
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDE---------TLED-YLGPECPKP 168 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~---------~~~~-~~~~~~~~~ 168 (259)
.+..+|++|+|+|++++-+.... .++..+.+.... ..|+++|.||+|+...... ...+ ....-....
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 45688999999999855444432 233334433222 2489999999998652100 0000 000011123
Q ss_pred HHHHHHHcCCc------------EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 169 LKEILQLCENR------------RVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 169 l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+.+.+..+.. ..+|..++.++ .++.+++..+.+.+.
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg----~~V~elf~~i~~~~~ 190 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG----YNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCC----CCHHHHHHHHHHHHH
Confidence 33444443311 33556666554 789999998876654
No 142
>PLN03108 Rab family protein; Provisional
Probab=99.71 E-value=2e-15 Score=121.71 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|+|||||+|.+++.........+.+.+... ..+. .++ ..+.+|||||.. .+..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~--~~i~-~~~~~i~l~l~Dt~G~~-----------~~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMIT-IDNKPIKLQIWDTAGQE-----------SFRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE--EEEE-ECCEEEEEEEEeCCCcH-----------HHHH
Confidence 35799999999999999999999876422211112221111 1122 233 368899999943 1222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++++|+|+++.-+... ..++..+..... ...|+++|+||+|+.....-. ......+.+
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~---------~~~~~~~~~ 139 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVS---------TEEGEQFAK 139 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCC---------HHHHHHHHH
Confidence 22334457899999999984433322 234444433222 234999999999986531111 112333444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..+.. ++..++... .++.+++..+...+
T Consensus 140 ~~~~~--~~e~Sa~~~----~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 EHGLI--FMEASAKTA----QNVEEAFIKTAAKI 167 (210)
T ss_pred HcCCE--EEEEeCCCC----CCHHHHHHHHHHHH
Confidence 43433 444444333 68888887665544
No 143
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.71 E-value=7.2e-16 Score=125.16 Aligned_cols=161 Identities=15% Similarity=0.052 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCc-ceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGV-TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.+|+++|.+|||||||++++++.........+... ........+. .....+.+|||||... .+..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~----------~~~~--- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEM----------WTED--- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcch----------HHHh---
Confidence 47999999999999999999866542111111111 1111111111 2335789999999641 1111
Q ss_pred hcCC-CccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 99 MAKD-GIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 99 ~~~~-~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
.+.. ++|++++|+|++++-+... ..++..+... ......|+++|+||+|+... ..+. ....+.+....
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~--~~v~-------~~~~~~~a~~~ 136 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS--REVS-------VQEGRACAVVF 136 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc--ceec-------HHHHHHHHHHc
Confidence 1223 7899999999985433322 3444445442 11234599999999998654 1110 11122333443
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+..+ +..++..+ .++.++++.+...+..
T Consensus 137 ~~~~--~e~SA~~~----~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKF--IETSAGLQ----HNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeE--EEecCCCC----CCHHHHHHHHHHHHHh
Confidence 4333 34443333 7899999998877753
No 144
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.71 E-value=1e-15 Score=125.08 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|+|||||+|+|+|..... ...+++|..+....+. .++..+.+|||||+.............+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLE-YKGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEE-ECCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 68999999999999999999886422 2234455555444443 5678999999999875432222222222 234
Q ss_pred CCCccEEEEEEeCCC
Q 024985 101 KDGIHAVLLVFSVRN 115 (259)
Q Consensus 101 ~~~~~~il~v~d~~~ 115 (259)
...+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 567799999999873
No 145
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.71 E-value=3.1e-16 Score=145.06 Aligned_cols=165 Identities=14% Similarity=0.202 Sum_probs=104.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
...++|+++|.+|+|||||+++|.+...... ...+.|.....+.+.+. .+..+.||||||.. .+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AF 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHH-----------HH
Confidence 4568999999999999999999998765322 22445555444443332 34789999999953 33
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.......+..+|++|+|+|++++...+..+.+..+.. .+ .|++||+||+|+.......+.+.+.. ...+.
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~----iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~ 378 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-AN----VPIIVAINKIDKANANTERIKQQLAK-----YNLIP 378 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-cC----ceEEEEEECCCccccCHHHHHHHHHH-----hccch
Confidence 3333445567799999999987777777777766543 33 39999999999865311111111110 00011
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+..+..+.++..++..+ .|+.+|++.|..+.
T Consensus 379 e~~g~~vpvv~VSAktG----~GIdeLle~I~~l~ 409 (742)
T CHL00189 379 EKWGGDTPMIPISASQG----TNIDKLLETILLLA 409 (742)
T ss_pred HhhCCCceEEEEECCCC----CCHHHHHHhhhhhh
Confidence 22232233444444443 78999999886653
No 146
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=3.7e-16 Score=120.15 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|++|+|||||++++....... . ..|.......+. ..+..+.+|||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--T---IPTIGFNVETVT-YKNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--c---CCccCcCeEEEE-ECCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 58999999999999999997665421 1 112222222233 4567899999999642 22222334
Q ss_pred CCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 101 KDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+..+|++|+|+|+++..+.. ...+...+.... ....|+++|+||+|+...
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA 115 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC
Confidence 56789999999998432211 122222222211 123599999999998644
No 147
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.71 E-value=2.7e-16 Score=121.75 Aligned_cols=160 Identities=14% Similarity=0.193 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
+|+++|++|||||||++++++.... ... .+++......... .++. .+.+|||||....... ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~--~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~------~~~~--- 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GEY--DPNLESLYSRQVT-IDGEQVSLEILDTAGQQQADTE------QLER--- 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-ccc--CCChHHhceEEEE-ECCEEEEEEEEECCCCcccccc------hHHH---
Confidence 4899999999999999999865431 111 1111111111122 2333 6889999997631000 1111
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
....+|++|+|+|++++-+... ..++..+..........|+++|+||+|+... ..+. ......+.+..+
T Consensus 68 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~-------~~~~~~~~~~~~ 137 (165)
T cd04146 68 -SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVS-------TEEGEKLASELG 137 (165)
T ss_pred -HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccC-------HHHHHHHHHHcC
Confidence 2345699999999985533332 3345555553211223599999999997533 1110 112333444444
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.. +|..++..+ ..++.+++..+...+
T Consensus 138 ~~--~~e~Sa~~~---~~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CL--FFEVSAAED---YDGVHSVFHELCREV 163 (165)
T ss_pred CE--EEEeCCCCC---chhHHHHHHHHHHHH
Confidence 33 344444322 148999999887654
No 148
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.70 E-value=4.7e-16 Score=120.87 Aligned_cols=163 Identities=16% Similarity=0.057 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.+|+++|++|||||||+|+|++....... .++........... .....+.+|||||..... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY---VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence 47999999999999999999988752111 11111111111111 123479999999965321 1112
Q ss_pred hcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCCCCchHHHH
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPECPKPLKEI 172 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~~~~~l~~~ 172 (259)
.....+|++++|+|.+++.+.. ...++..+..... ..|+++|+||+|+... ......+ ..-.......+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHHH
Confidence 2346789999999998433322 2334444444222 3599999999998765 2211100 00001122334
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
....+.. .++..++..+ .++.++++.|.+
T Consensus 142 ~~~~~~~-~~~~~Sa~~~----~gi~~l~~~i~~ 170 (171)
T cd00157 142 AKEIGAI-GYMECSALTQ----EGVKEVFEEAIR 170 (171)
T ss_pred HHHhCCe-EEEEeecCCC----CCHHHHHHHHhh
Confidence 4444431 2344443333 689999988754
No 149
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.70 E-value=2.9e-16 Score=146.48 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...++|+++|.+++|||||+++|.+..+.. ....+.|.....+.+. .++..+.||||||..+. ...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F-----------~~m 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVE-TNGGKITFLDTPGHEAF-----------TAM 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEE-ECCEEEEEEECCCCccc-----------hhH
Confidence 456899999999999999999998876532 2234566666666555 45688999999997542 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
.......+|++|+|+|++++...+..+.+..+.. .+ .|++||+||+|+...+...+...+.. ...+.+.+
T Consensus 354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~ 423 (787)
T PRK05306 354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AG----VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEW 423 (787)
T ss_pred HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cC----CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHh
Confidence 2234456799999999987777777777765544 33 39999999999864321111111110 01112223
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+..+.+|..++..+ .|+.+|++.|..
T Consensus 424 g~~vp~vpvSAktG----~GI~eLle~I~~ 449 (787)
T PRK05306 424 GGDTIFVPVSAKTG----EGIDELLEAILL 449 (787)
T ss_pred CCCceEEEEeCCCC----CCchHHHHhhhh
Confidence 33333444444443 789999988764
No 150
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.70 E-value=7.5e-16 Score=140.92 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=107.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.|+++|.+++|||||+|+|+|...-. ......+.|.+..+..+. .++..+.+|||||.. .+...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~-~~~~~v~~iDtPGhe-----------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP-LPDYRLGFIDVPGHE-----------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE-eCCEEEEEEECCCHH-----------HHHHHHHh
Confidence 68999999999999999999854210 111234566666655555 456889999999942 34444455
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN- 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (259)
.+.++|++++|+|++.+...+..+.+..+.. .+. .+++||+||+|+.+. ..+.... ..++.++...+.
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~-----~ei~~~l~~~~~~ 138 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTE-----MFMKQILNSYIFL 138 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHH-----HHHHHHHHHhCCC
Confidence 5678899999999997777777777766544 443 139999999998754 3222211 134455544321
Q ss_pred -cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 179 -RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+.++..++..+ .|+.+|+..+..++...
T Consensus 139 ~~~~ii~vSA~tG----~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 139 KNAKIFKTSAKTG----QGIGELKKELKNLLESL 168 (581)
T ss_pred CCCcEEEEeCCCC----CCchhHHHHHHHHHHhC
Confidence 123344444333 68899998888776653
No 151
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.70 E-value=3.6e-16 Score=127.44 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=95.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH-HHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF-VSKEIVK 95 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~-~~~~~~~ 95 (259)
...++|+++|.||+|||||.|.+.|..+++ ++....|+.+....+...+..+++|+||||+......... ....+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~--vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSA--VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccc--ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 346899999999999999999999999844 4456667777777776567789999999999865433221 1222222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
....+...+|++++|+|+++.-......+|..+...... |.++|.||+|....
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~ 200 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQ 200 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----Cceeeccchhcchh
Confidence 334455677999999999854444455677777776554 99999999998865
No 152
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.70 E-value=8.9e-16 Score=121.68 Aligned_cols=166 Identities=16% Similarity=0.082 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||++++++....... ..|....+......++ ..+.+|||||... +....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----------~~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEE-----------FDRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChh-----------ccccc
Confidence 37999999999999999999987652211 1121111111111233 4789999999532 11222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC-----CCCchHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP-----ECPKPLK 170 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~-----~~~~~l~ 170 (259)
...+..+|++++|+|+++.-+.... .++..+.... ...|+++|.||+|+... ....+.+.. .......
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence 3356788999999999855444332 3555555432 23599999999998754 222111100 0011122
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+....+ .+.+|..++..+ .++.+++..+...+..
T Consensus 141 ~~~~~~~-~~~~~e~SAk~~----~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 141 AVAKRIN-ALRYLECSAKLN----RGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHcC-CCEEEEccCCcC----CCHHHHHHHHHHHHhc
Confidence 3333323 234566665554 7899999988877654
No 153
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.70 E-value=9.3e-16 Score=119.69 Aligned_cols=163 Identities=18% Similarity=0.081 Sum_probs=93.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
|+++|.+|||||||++++++...... . .+ |....+......++. .+.+|||||.... ......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED-Y--VP-TVFENYSADVEVDGKPVELGLWDTAGQEDY-----------DRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC-C--CC-cEEeeeeEEEEECCEEEEEEEEECCCCccc-----------chhchh
Confidence 68999999999999999998764221 1 11 111111111113333 6899999995421 112233
Q ss_pred cCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHHHHH
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLKEIL 173 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~~~~ 173 (259)
.+.++|++|+|+|+++.-+... ..++..+.... ...|+++|+||+|+.... ...+++... -.......+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence 4668899999999985433332 23455554432 235999999999987531 222222211 0112233455
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+..+. ..++..++..+ .++.++++.+...+
T Consensus 142 ~~~~~-~~~~e~Sa~~~----~~v~~lf~~l~~~~ 171 (174)
T smart00174 142 KRIGA-VKYLECSALTQ----EGVREVFEEAIRAA 171 (174)
T ss_pred HHcCC-cEEEEecCCCC----CCHHHHHHHHHHHh
Confidence 55443 12444444443 78999999877654
No 154
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.70 E-value=1.4e-15 Score=119.09 Aligned_cols=161 Identities=15% Similarity=0.057 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|.+|+|||||++++....... . ...|....+. .+. .++ ..+.+|||||... +...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~-~---~~pt~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPS-E---YVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED-----------YDRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-C---CCCceeeeeEEEEE-ECCEEEEEEEEECCCccc-----------hhhh
Confidence 589999999999999999999766421 1 1122222221 222 334 4688999999643 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCC-----CCchH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPE-----CPKPL 169 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~-----~~~~l 169 (259)
....+.++|++|+|+|++++-+.... .++..+.... . ..|+++|.||+|+... ....+.+... ..+..
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-P--KTPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 23356688999999999855444432 3555555432 1 3599999999997644 2222211110 01122
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+.+.+..+ ...+|..++..+ .|+.++++.+..
T Consensus 141 ~~~a~~~~-~~~~~e~SA~tg----~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLK-AVKYVECSALTQ----KGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhC-CcEEEEecCCCC----CCHHHHHHHHHH
Confidence 33333332 234566666554 789999987765
No 155
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.70 E-value=7.7e-16 Score=123.86 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=78.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEeeCCcEE
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTMLKDGQVV 71 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~~~~~ 71 (259)
+|+++|++|+|||||+++|+........ ....+.|.+.....+. .++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence 5899999999999999999765422110 0013556665555554 467799
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
.||||||+. .+...+..+...+|++|+|+|++.+....+...+..+.. .+. .++++|+||+|+..
T Consensus 80 ~liDTpG~~-----------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHE-----------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHH-----------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 999999953 222222334567899999999987776666555554443 332 36788999999875
Q ss_pred C
Q 024985 152 D 152 (259)
Q Consensus 152 ~ 152 (259)
.
T Consensus 145 ~ 145 (208)
T cd04166 145 Y 145 (208)
T ss_pred C
Confidence 3
No 156
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.70 E-value=5.2e-16 Score=114.78 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
-.++|+++|.+|+|||||+-++.....-+-...+.++...+....+. .....+.||||+|- +.+....
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-g~~~KlaiWDTAGq-----------ErFRtLT 77 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-GKRLKLAIWDTAGQ-----------ERFRTLT 77 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-CceEEEEEEeccch-----------HhhhccC
Confidence 34899999999999999999998766522222234555555554433 33458999999993 4666666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
..+++++.++|+|+|++.+-+... ..|++.+.- +.....--.++|.||+|.-.
T Consensus 78 pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~-Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 78 PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDL-YSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred HhHhccCceeEEEEEccchhhHHhHHHHHHHHHh-hcCCccHhHhhhcccccchh
Confidence 778999999999999985544332 234444433 22222224578999999653
No 157
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.70 E-value=1.5e-15 Score=118.92 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|.+|+|||||+.++...... ... . .|....+ ..+. .++ ..+.+|||+|... +...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~--~-~Ti~~~~~~~~~-~~~~~v~l~i~Dt~G~~~-----------~~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDY--I-PTVFDNFSANVS-VDGNTVNLGLWDTAGQED-----------YNRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCC--C-CcceeeeEEEEE-ECCEEEEEEEEECCCCcc-----------cccc
Confidence 47999999999999999999977642 211 1 1211111 1122 233 4789999999542 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH-Hhh-hCCCCCchHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL-EDY-LGPECPKPLKEI 172 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~-~~~-~~~~~~~~l~~~ 172 (259)
....+.++|++|+|+|.+++-+.... .|+..+.... . ..|+++|.||+|+.+.. ... .+. ...-..+..+.+
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEEL 141 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHH
Confidence 33456788999999999866555542 4666665532 2 35999999999986431 000 000 000012233444
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+..+. ..+|..++.++ .++.+++..+.+.+
T Consensus 142 a~~~~~-~~~~E~SAk~~----~nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RKQIGA-AAYIECSSKTQ----QNVKAVFDAAIKVV 172 (176)
T ss_pred HHHcCC-CEEEECCCCcc----cCHHHHHHHHHHHH
Confidence 554432 23566666655 78999999888765
No 158
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=5.6e-16 Score=120.82 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=89.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||+++|.+...... ..|.......+. ..+..+.+|||||.. .+...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~-~~~~~~~~~D~~G~~-----------~~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQ-SDGFKLNVWDIGGQR-----------AIRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence 3468999999999999999999998754211 112222222333 457789999999953 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++++|+|+.+.-+... ...+..+.... .....|+++++||+|.... ...+++... +. +...
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~~~~ 145 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATA--APAEEIAEA-----LN-LHDL 145 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccC--CCHHHHHHH-----cC-Cccc
Confidence 3334567799999999973221111 12222221111 1123599999999998654 223222210 00 0000
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
....+.++..++.++ .|+.+++++|.+
T Consensus 146 ~~~~~~~~~~Sa~~~----~gi~~~~~~l~~ 172 (173)
T cd04155 146 RDRTWHIQACSAKTG----EGLQEGMNWVCK 172 (173)
T ss_pred CCCeEEEEEeECCCC----CCHHHHHHHHhc
Confidence 011122344444443 789999988753
No 159
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.70 E-value=1.6e-15 Score=116.38 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
+|+++|++|||||||++++++... .... .+++......... .. ...+.+||+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY--DPTIEDSYRKTIV-VDGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc--CCChhHeEEEEEE-ECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999998763 2221 2222222222222 23 24788999999542 111222
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.....+|++++|+|.++.-+..+ ..++..+..... ....|+++|+||+|........ ......+....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVS---------KEEGKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceec---------HHHHHHHHHHcC
Confidence 23446799999999984332222 334444444332 1235999999999987531111 112333444444
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
..+ +..++..+ .++.++++.|..
T Consensus 136 ~~~--~~~S~~~~----~~i~~l~~~l~~ 158 (160)
T cd00876 136 CPF--IETSAKDN----INIDEVFKLLVR 158 (160)
T ss_pred CcE--EEeccCCC----CCHHHHHHHHHh
Confidence 333 33333332 689999988765
No 160
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=2.6e-15 Score=122.11 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...+|+++|.+|||||||++.+++..... .. ..|....+. .+. .++ ..+.||||||-. .+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y---~pTi~~~~~~~i~-~~~~~v~l~iwDTaG~e-----------~~~ 75 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE-TY---VPTVFENYTAGLE-TEEQRVELSLWDTSGSP-----------YYD 75 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC-Cc---CCceeeeeEEEEE-ECCEEEEEEEEeCCCch-----------hhH
Confidence 45799999999999999999998776421 11 112111111 122 233 479999999942 233
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCCCch
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PECPKP 168 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~~~~ 168 (259)
.....++.++|++|+|+|++++-+... ..|+..+..... ..|+++|.||+|+.... ..+.+... .-....
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDL-STLMELSNQKQAPISYEQ 151 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccccc-chhhhhccccCCcCCHHH
Confidence 333456788999999999986655443 355666655332 34999999999975321 11111100 011223
Q ss_pred HHHHHHHcCCcEEEEeCCCcccccchh-HHHHHHHHHHHHHHH
Q 024985 169 LKEILQLCENRRVLFDNKTKDAATRTE-QVGKLISLVNSVILE 210 (259)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~eLl~~i~~~~~~ 210 (259)
.+.+.+..+.. .+|..++.++ . ++.+++..+...+.+
T Consensus 152 ~~~~a~~~~~~-~~~EtSAktg----~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 152 GCALAKQLGAE-VYLECSAFTS----EKSIHSIFRSASLLCLN 189 (232)
T ss_pred HHHHHHHcCCC-EEEEccCCcC----CcCHHHHHHHHHHHHHH
Confidence 45556655532 3456665543 4 699999987766543
No 161
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=2.9e-16 Score=128.64 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
..|.|||-||+|||||+|+|..... .-..+..+|-.+.+..+.+.+...+.+-|.||+......+..+...+.+++..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 4688999999999999999998875 22334556666666655433334699999999998877777788888888877
Q ss_pred cCCCccEEEEEEeCCCC--CCH-hHHHHHH-HHHHHhccc-ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 100 AKDGIHAVLLVFSVRNR--FSE-EGGAAIH-SLESLFGKK-VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~--~~~-~~~~~l~-~l~~~~~~~-~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
+ +.++||+|++.. .++ +....|. .+.- +.+. ..+|.+||.||+|..+. ....++.+.+
T Consensus 275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~-yek~L~~rp~liVaNKiD~~ea------------e~~~l~~L~~ 337 (366)
T KOG1489|consen 275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELEL-YEKGLADRPALIVANKIDLPEA------------EKNLLSSLAK 337 (366)
T ss_pred h----ceEEEEEECCCcccCCHHHHHHHHHHHHHH-HhhhhccCceEEEEeccCchhH------------HHHHHHHHHH
Confidence 7 899999999844 122 2333322 2322 2222 44689999999997533 1223456666
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
...+. .+|.-++.. .+++.+|+..+..
T Consensus 338 ~lq~~-~V~pvsA~~----~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNP-HVVPVSAKS----GEGLEELLNGLRE 364 (366)
T ss_pred HcCCC-cEEEeeecc----ccchHHHHHHHhh
Confidence 66654 233333332 2788888887654
No 162
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=9.8e-16 Score=117.08 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=108.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|..+|||||||+.++-......-..+.|........ . ..+ .++.+|||+| .+.+..
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~--~-l~d~~vrLQlWDTAG-----------QERFrs 86 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTM--Y-LEDRTVRLQLWDTAG-----------QERFRS 86 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEE--E-EcCcEEEEEEEeccc-----------HHHHhh
Confidence 45899999999999999999998555422211222322222222 1 333 3789999999 457888
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.+..+++++.++|+|+|++++-+.+. ..|++-+....|.+ ...+++|.||.|+.+...-+.+ .-....+
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs~e---------Eg~~kAk 156 (221)
T KOG0094|consen 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVSIE---------EGERKAK 156 (221)
T ss_pred hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhhHH---------HHHHHHH
Confidence 88889999999999999996655543 56777666655543 1378899999999866211111 1113344
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+. .+...++..+ .++.+|+..|...+++.
T Consensus 157 el~a--~f~etsak~g----~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 157 ELNA--EFIETSAKAG----ENVKQLFRRIAAALPGM 187 (221)
T ss_pred HhCc--EEEEecccCC----CCHHHHHHHHHHhccCc
Confidence 4444 3444444444 68999999999888764
No 163
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=3.6e-16 Score=119.50 Aligned_cols=113 Identities=22% Similarity=0.187 Sum_probs=69.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK 101 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (259)
|+++|++|||||||+|+|.+....... ..|.......+. .++..+.+|||||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 789999999999999999998652221 122222223333 3457899999999532 222223345
Q ss_pred CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC
Q 024985 102 DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELED 152 (259)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~ 152 (259)
..+|++++|+|++...+.. ....++...... ....|+++|+||+|....
T Consensus 66 ~~~d~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 66 RGVNAIVYVVDAADRTALE--AAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred hcCCEEEEEEECCCHHHHH--HHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 5679999999997322211 111222222111 123499999999997654
No 164
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.69 E-value=1e-15 Score=140.46 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.|+++|.+++|||||+++|+|...-. ......+.|....+......++..+.||||||.. .+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 58999999999999999999854211 1112246676665554443456789999999942 33344444
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN- 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (259)
...++|++++|+|++.++.+++.+.+..+.. ++. .+++||+||+|+.+. ..++.... .++..+...+.
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~--~~~~~v~~-----ei~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVDE--ARIAEVRR-----QVKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCH--HHHHHHHH-----HHHHHHHhcCCC
Confidence 5667899999999998888888888877655 443 246899999998754 33332222 34444444332
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+|..++..+ .|+.+|++.|.++...
T Consensus 140 ~~~ii~VSA~tG----~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 EAKLFVTAATEG----RGIDALREHLLQLPER 167 (614)
T ss_pred CCcEEEEeCCCC----CCCHHHHHHHHHhhcc
Confidence 122333333333 7899999999887543
No 165
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=6.2e-16 Score=128.15 Aligned_cols=170 Identities=19% Similarity=0.168 Sum_probs=116.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
-|.+||-||+|||||+++++.... ....++.+|..+....+....+..|++-|.||+.........+..++.+++..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 367999999999999999998875 334455666666666555445678999999999988777777888888888877
Q ss_pred CCCccEEEEEEeCCCC--CC-HhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 101 KDGIHAVLLVFSVRNR--FS-EEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~--~~-~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
.++++|+|++.. .. .++. .+...|...-..=..+|.+||+||+|...+. +.++. ..+.+.+.+
T Consensus 239 ----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~--------~~~~l~~~~ 305 (369)
T COG0536 239 ----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEE--------LKKALAEAL 305 (369)
T ss_pred ----heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHH--------HHHHHHHhc
Confidence 799999999721 11 2333 3333444422222457999999999966441 22222 233555555
Q ss_pred CCcEEE-EeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 177 ENRRVL-FDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 177 ~~~~~~-~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+..... ++.. .++++.+|+..+.+++...
T Consensus 306 ~~~~~~~ISa~------t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 306 GWEVFYLISAL------TREGLDELLRALAELLEET 335 (369)
T ss_pred CCCcceeeehh------cccCHHHHHHHHHHHHHHh
Confidence 654443 3332 2378999999998888764
No 166
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.69 E-value=3.6e-15 Score=119.02 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe----eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML----KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~----~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
+|+++|.+|||||||++.+++.........+.+.+.......+.. .....+.||||+|-. .+...
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e-----------~~~~l 70 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE-----------SVKST 70 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch-----------hHHHH
Confidence 799999999999999999998765322111122222112111110 012368999999943 33334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc-----------------ccccCeEEEEEeCCCCCCCCcccHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG-----------------KKVFDYMIVVFTGGNELEDNDETLE 158 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ivV~nk~D~~~~~~~~~~ 158 (259)
....+.++|++|+|+|++++-+... ..|+..+....+ .....|++||.||.|+.......-+
T Consensus 71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~ 150 (202)
T cd04102 71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN 150 (202)
T ss_pred HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence 4456778999999999986644443 345555543211 0123499999999998653101111
Q ss_pred hhhCCCCCchHHHHHHHcCCcEEEEeCCCccc-ccchhHHHHHHHHHHHHHH
Q 024985 159 DYLGPECPKPLKEILQLCENRRVLFDNKTKDA-ATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~eLl~~i~~~~~ 209 (259)
.. ......+.++++......+...... +....+...|.+.....+.
T Consensus 151 ~~-----~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 151 LV-----LTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred HH-----hhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 00 1134466777887766655543221 1223455556555555554
No 167
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=1.5e-15 Score=121.36 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
+|+++|.+|||||||++++++...... . .+++.......+. ..+ ..+.+|||||.... .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y--RRTVEEMHRKEYE-VGGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C--CCchhhheeEEEE-ECCEEEEEEEEECCCchhh-----------hHHHH
Confidence 589999999999999999998764221 1 1111111111222 334 47889999996431 11222
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-Hc
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ-LC 176 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 176 (259)
..+..+|++|+|+|+++..+... ..++..+.+... ....|+++|+||+|+.... ..+. ......... ..
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~-------~~~~~~~~~~~~ 136 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVP-------AKDALSTVELDW 136 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-cccc-------HHHHHHHHHhhc
Confidence 34567899999999984433332 233344444322 2235999999999986531 1110 001111111 11
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+.. ++..++..+ .|+.+|++.+.+.+.
T Consensus 137 ~~~--~~~~Sa~~g----~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCG--FVETSAKDN----ENVLEVFKELLRQAN 163 (198)
T ss_pred CCc--EEEecCCCC----CCHHHHHHHHHHHhh
Confidence 222 333333333 799999999887665
No 168
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=2.3e-15 Score=117.21 Aligned_cols=161 Identities=12% Similarity=0.021 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
+..+|+++|.+|||||||++++++........ .+..........+. .++ ..+.+|||+|..... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-~~T~~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~-----------~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAY-SPTIKPRYAVNTVE-VYGQEKYLILREVGEDEVAI-----------L 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccC-CCccCcceEEEEEE-ECCeEEEEEEEecCCccccc-----------c
Confidence 45799999999999999999999877520111 11111112212222 233 468899999954321 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.....+..+|++|+|+|++++.+.. .+.+++.. +......|+++|+||+|+.+.. .. ......++.+.
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~~--~~-------~~~~~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFS--YCAEVYKK-YFMLGEIPCLFVAAKADLDEQQ--QR-------YEVQPDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHH-hccCCCCeEEEEEEcccccccc--cc-------cccCHHHHHHH
Confidence 1122346789999999997442211 22233332 2111235999999999986431 10 01123344444
Q ss_pred cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+. .++.+++.. + .++.+|++.+.+.+.
T Consensus 138 ~~~~~~~~~Sa~~--~----~~v~~lf~~l~~~~~ 166 (169)
T cd01892 138 LGLPPPLHFSSKL--G----DSSNELFTKLATAAQ 166 (169)
T ss_pred cCCCCCEEEEecc--C----ccHHHHHHHHHHHhh
Confidence 443 233444332 2 689999998877653
No 169
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.69 E-value=3.4e-15 Score=118.57 Aligned_cols=167 Identities=16% Similarity=0.082 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..+|+++|.+|||||||++.+....... .. ..|....+. .+. .++ ..+.+|||||-. .+..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~-~~---~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~e-----------~~~~ 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK-EY---IPTVFDNYSAQTA-VDGRTVSLNLWDTAGQE-----------EYDR 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc-CC---CCceEeeeEEEEE-ECCEEEEEEEEECCCch-----------hhhh
Confidence 4789999999999999999998765421 11 112211111 111 233 478999999943 2333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPL 169 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l 169 (259)
.....+.++|++|+|+|++++-+.... .++..+.... . ..|+++|.||.|+.+.. ...+.+... ......
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 142 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQG 142 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHH
Confidence 334467789999999999855444432 2444444322 2 35999999999986431 111111110 011123
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+.+.+..+. ..+|..++..+ .++.+++..+.+.+..
T Consensus 143 ~~~a~~~~~-~~~~e~SAk~g----~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 143 GALAKQIHA-VKYLECSALNQ----DGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHcCC-cEEEEeCCCCC----CCHHHHHHHHHHHHhc
Confidence 344444332 33556665554 7899999988776643
No 170
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.68 E-value=2.8e-15 Score=117.98 Aligned_cols=165 Identities=14% Similarity=0.069 Sum_probs=99.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...+|+++|.+|+|||||++++....... .. ..|....+. .+. .++ ..+.+|||+|-. .+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~-~~---~pT~~~~~~~~~~-~~~~~~~l~iwDtaG~e-----------~~~ 67 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NY---VPTVFENYTASFE-IDTQRIELSLWDTSGSP-----------YYD 67 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC-cc---CCceeeeeEEEEE-ECCEEEEEEEEECCCch-----------hhH
Confidence 45799999999999999999998776422 11 112211111 122 233 478999999942 233
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCCCch
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PECPKP 168 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~~~~ 168 (259)
......+.++|++|+|+|++++.+... ..|++.+.+.. . ..|+++|.||+|+.... ..+.+... .-....
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 333456788999999999986655444 35666666543 2 35999999999975321 11111100 011223
Q ss_pred HHHHHHHcCCcEEEEeCCCcccccchhH-HHHHHHHHHHH
Q 024985 169 LKEILQLCENRRVLFDNKTKDAATRTEQ-VGKLISLVNSV 207 (259)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~eLl~~i~~~ 207 (259)
..++.+..+. ..++..++..+ .+ +.+++..+...
T Consensus 144 ~~~~a~~~~~-~~~~E~SAk~~----~n~v~~~F~~~~~~ 178 (182)
T cd04172 144 GANMAKQIGA-ATYIECSALQS----ENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHcCC-CEEEECCcCCC----CCCHHHHHHHHHHH
Confidence 4555555543 23556665554 66 99998876653
No 171
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.68 E-value=4.1e-16 Score=138.46 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=84.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc--------------c---------------CCCCCcceeeEEEEEEee
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS--------------K---------------AGSSGVTKTCEMQRTMLK 66 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~---------------~~~~~~T~~~~~~~~~~~ 66 (259)
.++..+|+++|++++|||||+++|+....... + ....+.|.+.....+. .
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~ 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-T 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-c
Confidence 45678999999999999999999984432111 0 0135677777776665 4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC--CCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
++..+.||||||..+. ...+......+|++|+|+|++. ++...+.+.+..+.. ++. .+++||+
T Consensus 82 ~~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence 6789999999996431 1112223457899999999986 566666666665544 342 3799999
Q ss_pred eCCCCCC
Q 024985 145 TGGNELE 151 (259)
Q Consensus 145 nk~D~~~ 151 (259)
||+|+..
T Consensus 147 NK~Dl~~ 153 (425)
T PRK12317 147 NKMDAVN 153 (425)
T ss_pred Ecccccc
Confidence 9999875
No 172
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.68 E-value=2.8e-15 Score=116.45 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||++++.+..... ... +++...-..... .++ ..+.+|||||.... ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~-~~~--~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE-SYD--PTIEDSYRKQVE-IDGRQCDLEILDTAGTEQF-----------TAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccC--CcchheEEEEEE-ECCEEEEEEEEeCCCcccc-----------hhhh
Confidence 589999999999999999999776422 111 111111111111 222 47889999996532 1222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+..++++++|+|.+++-+... ..+...+.+... ....|+++|+||+|+........ .....+.+..
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~---------~~~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSR---------EDGVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCH---------HHHHHHHHHc
Confidence 233456799999999984433222 234444444322 22359999999999865411111 1122333443
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+. ..++..++..+ .++.++++.+...
T Consensus 137 ~~-~~~~~~SA~~~----~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GN-VPFYETSARKR----TNVDEVFIDLVRQ 162 (168)
T ss_pred CC-ceEEEeeCCCC----CCHHHHHHHHHHH
Confidence 31 23445554433 7888888887653
No 173
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.68 E-value=3.4e-15 Score=117.25 Aligned_cols=161 Identities=18% Similarity=0.176 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|+|||||++++++....... .+++......... ..+ ..+.+|||||... +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY---YPTIENTFSKIIR-YKGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc---CcchhhhEEEEEE-ECCEEEEEEEEECCChHh-----------hHHHH
Confidence 58999999999999999999977642211 1222111111122 233 3578999999542 11222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+..+|++++|+|.++..+... ..++..+.+..+ ....|+++|+||+|+... .... ......+.+..
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~-------~~~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVS-------TEEGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccC-------HHHHHHHHHHc
Confidence 234456799999999985433322 233344433222 123499999999998643 1111 11233344444
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+..+ +..++..+ .++.+++..+.+.+...
T Consensus 137 ~~~~--~~~Sa~~~----~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 137 GAAF--LESSAREN----ENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCeE--EEEeCCCC----CCHHHHHHHHHHHHHHh
Confidence 4333 33343333 68999999888776554
No 174
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.68 E-value=7.8e-16 Score=125.97 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=89.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccc----------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
+|+++|++|+|||||+++|+........ ....+.|.......+. ..+..+.+|||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccch--
Confidence 5899999999999999999754321110 0011223333333344 46779999999997642
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCC
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPE 164 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~ 164 (259)
...+.. +...+|++++|+|+..+.......+++.+.. .+ .|+++|+||+|+... .
T Consensus 78 -----~~~~~~----~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~----~P~iivvNK~D~~~a-----------~ 132 (237)
T cd04168 78 -----IAEVER----SLSVLDGAILVISAVEGVQAQTRILWRLLRK-LN----IPTIIFVNKIDRAGA-----------D 132 (237)
T ss_pred -----HHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccccCC-----------C
Confidence 122222 3345699999999987777777777776655 34 399999999998754 1
Q ss_pred CCchHHHHHHHcCCcEEEEeC
Q 024985 165 CPKPLKEILQLCENRRVLFDN 185 (259)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~ 185 (259)
....+..+...++.+++.++.
T Consensus 133 ~~~~~~~i~~~~~~~~~~~~~ 153 (237)
T cd04168 133 LEKVYQEIKEKLSSDIVPMQK 153 (237)
T ss_pred HHHHHHHHHHHHCCCeEEEEC
Confidence 223455666667766665544
No 175
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=3.2e-15 Score=117.34 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|.+|||||||++++.+.... ... . .|....+. .+. .++ ..+.+|||||.. .+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~--~-~t~~~~~~~~~~-~~~~~~~l~iwDt~G~~-----------~~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETY--V-PTVFENYTASFE-IDEQRIELSLWDTSGSP-----------YYDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCc--C-CceEEEEEEEEE-ECCEEEEEEEEECCCch-----------hhhhc
Confidence 58999999999999999999987642 111 1 12111111 122 233 478899999943 22223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCCCchHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PECPKPLK 170 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~~~~l~ 170 (259)
....+.++|++|+|+|++++-+... ..|+..+.+... ..|+++|.||+|+.+.. ....++-. .-......
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3446778999999999986655544 345666655432 35999999999985421 11111100 00122344
Q ss_pred HHHHHcCCcEEEEeCCCcccccchh-HHHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTE-QVGKLISLVNSV 207 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~eLl~~i~~~ 207 (259)
++.+..+. ..+|..++.++ . ++.+++..+...
T Consensus 142 ~~a~~~~~-~~~~E~SA~~~----~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGA-EIYLECSAFTS----EKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCC-CEEEECccCcC----CcCHHHHHHHHHHH
Confidence 55555443 23466665544 5 499998877663
No 176
>PRK12735 elongation factor Tu; Reviewed
Probab=99.68 E-value=1.8e-15 Score=132.93 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=106.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCC------ccc--------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRR------AFK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~------~~~--------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
+.+..+|+++|++++|||||+++|++.. .+. ......+.|.......+. .++..+.|+||||..
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~- 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHA- 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHH-
Confidence 4567899999999999999999998621 000 001134566665544443 356689999999952
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE-EEEEeCCCCCCCCcccHHhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM-IVVFTGGNELEDNDETLEDY 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~nk~D~~~~~~~~~~~~ 160 (259)
.+...+......+|++++|+|+..+....+.+.+..+.. .+. |. ++|+||+|+.+. +...+.
T Consensus 87 ----------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~ 149 (396)
T PRK12735 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred ----------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHH
Confidence 333444445567899999999987777777777776654 443 64 468999998753 233222
Q ss_pred hCCCCCchHHHHHHHcCC---cEEEEeCCCcccc------cchhHHHHHHHHHHHHHH
Q 024985 161 LGPECPKPLKEILQLCEN---RRVLFDNKTKDAA------TRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~------~~~~~i~eLl~~i~~~~~ 209 (259)
+. ..++.++..++. .+.++..++..+. ....++.+|++.+...++
T Consensus 150 ~~----~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 150 VE----MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HH----HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 22 145556665542 2333333332210 112367888888888764
No 177
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.68 E-value=3.8e-15 Score=116.51 Aligned_cols=163 Identities=15% Similarity=0.013 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||+.+++...... .. .++........+. .++ ..+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~-~~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPG-EY--IPTVFDNYSANVM-VDGKPVNLGLWDTAGQED-----------YDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-cC--CCcceeeeEEEEE-ECCEEEEEEEEECCCchh-----------hhhhh
Confidence 589999999999999999998765421 11 1111111111122 233 4788999999532 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLKE 171 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~~ 171 (259)
...+.++|++|+|+|++++-+.... .++..+.... ...|+++|.||+|+.... .+.+..... -.......
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence 3356788999999999854443332 3455554422 135999999999985431 222211110 01122334
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+.+..+. ..+|..++..+ .++.++++.+..
T Consensus 143 ~~~~~~~-~~~~e~Sa~~~----~~i~~~f~~l~~ 172 (174)
T cd01871 143 MAKEIGA-VKYLECSALTQ----KGLKTVFDEAIR 172 (174)
T ss_pred HHHHcCC-cEEEEeccccc----CCHHHHHHHHHH
Confidence 4444432 34556665554 789999987764
No 178
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.68 E-value=2e-15 Score=124.37 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||++++++..... . ..+++.+.....+. .++ ..+.||||||.... ....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~--y~pTi~d~~~k~~~-i~~~~~~l~I~Dt~G~~~~-----------~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-Q--YTPTIEDFHRKLYS-IRGEVYQLDILDTSGNHPF-----------PAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-C--CCCChhHhEEEEEE-ECCEEEEEEEEECCCChhh-----------hHHH
Confidence 379999999999999999998776422 1 11222111111122 334 46889999995421 1111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHh-------cccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLF-------GKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL 169 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l 169 (259)
..++..+|++|+|+|++++-+... ..+++.+.... ......|+++|+||+|+........ ..+
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~---------~ei 136 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR---------DEV 136 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH---------HHH
Confidence 223457799999999985543332 33444444321 0112459999999999864311111 122
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+++... ....++..++..+ .++.+|++.|..+.
T Consensus 137 ~~~~~~~-~~~~~~evSAktg----~gI~elf~~L~~~~ 170 (247)
T cd04143 137 EQLVGGD-ENCAYFEVSAKKN----SNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHhc-CCCEEEEEeCCCC----CCHHHHHHHHHHHh
Confidence 3333221 1223444444433 78999999988765
No 179
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.6e-15 Score=130.80 Aligned_cols=178 Identities=17% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+.|+++|+||+|||||+|+|.+.+... +++ +|+|++.....+. .+|.++.++||+|+.....+. +...=.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI--VSpv~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~--iE~~gI 339 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSI--VSPVPGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDG--IEALGI 339 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceE--eCCCCCcchhhheeEee-cCCeEEEEEeccccccccCCh--hHHHhH
Confidence 3456899999999999999999999999733 444 4566666666555 899999999999998722222 111112
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHh-ccc------ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCc
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLF-GKK------VFDYMIVVFTGGNELEDNDETLEDYLGPECPK 167 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~-~~~------~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~ 167 (259)
.........+|++++|+|+....+..+..+.+.+...- |.. ...++++|.||.|...+-+ ++. . .
T Consensus 340 ~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~-~~~---~----~ 411 (531)
T KOG1191|consen 340 ERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP-EMT---K----I 411 (531)
T ss_pred HHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc-ccc---C----C
Confidence 22233455779999999996566666656555554421 111 2268999999999875410 000 0 0
Q ss_pred hHHHHHH--HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 168 PLKEILQ--LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 168 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+...-. ....+++.+.++ ..+++++.|...+.+.+...
T Consensus 412 ~~~~~~~~~~~~~~i~~~vs~-----~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 412 PVVYPSAEGRSVFPIVVEVSC-----TTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ceeccccccCcccceEEEeee-----chhhhHHHHHHHHHHHHHHh
Confidence 0000111 011233343333 23489999999887776554
No 180
>PRK12736 elongation factor Tu; Reviewed
Probab=99.67 E-value=3.2e-15 Score=131.24 Aligned_cols=171 Identities=15% Similarity=0.182 Sum_probs=108.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
.++..+|+++|+.++|||||+++|++..... ......+.|.+.....+. .++..+.+|||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHA- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHH-
Confidence 4567899999999999999999998632100 000134566665544433 356689999999942
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDY 160 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~ 160 (259)
.+...+......+|++++|+|++.++...+.+.+..+.. .+. | +++|+||+|+.+. +.+.+.
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~-~g~----~~~IvviNK~D~~~~--~~~~~~ 149 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGV----PYLVVFLNKVDLVDD--EELLEL 149 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CEEEEEEEecCCcch--HHHHHH
Confidence 222333334457799999999987888888888887765 343 5 6789999998744 333332
Q ss_pred hCCCCCchHHHHHHHcCC-----cEEEEeCCCc--ccccchhHHHHHHHHHHHHHH
Q 024985 161 LGPECPKPLKEILQLCEN-----RRVLFDNKTK--DAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+. ..++.++...+. .++..++... .......++.+|++.+.+.++
T Consensus 150 i~----~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 150 VE----MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH----HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 22 245555555543 2333333221 111122367888888888765
No 181
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=1.2e-15 Score=127.08 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc----------------cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKS----------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
+|+++|++|+|||||+++|+....... .....+.|.......+. ..+..+++|||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence 589999999999999999973221000 01123555555555555 46789999999996531
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
...+. .+...+|++++|+|+..+....+..+++.+.. .+ .|+++++||+|+...
T Consensus 78 -----~~~~~----~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~-~~----~p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIEVE----RSLRVLDGAVAVFDAVAGVEPQTETVWRQADR-YN----VPRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHHHH----HHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence 22233 33445699999999987888888778777665 34 399999999998753
No 182
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.67 E-value=4.8e-15 Score=112.85 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|+|||||+|++++.. +... ...+.+.......+. .++ ..+.+|||||..... ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~----~~~------- 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITE-YKPGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYR----AIR------- 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCc-CCCCceeeeeEEEEE-ECCEEEEEEEEECCCcccch----HHH-------
Confidence 689999999999999999999888 3322 223344444333233 455 578999999954321 111
Q ss_pred hhcCCCccEEEEEEeCCCC-CCH--hHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNR-FSE--EGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~-~~~--~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
......++.+++++|.... .+. ....++..+...... ..|+++|+||+|+... . . .......+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~--------~~~~~~~~~ 134 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-L--------KTHVAFLFA 134 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-h--------hHHHHHHHh
Confidence 1122234666667766522 111 112333444443322 3599999999998754 1 1 112333333
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
..+... ++..++..+ .++.+++..|.
T Consensus 135 ~~~~~~-~~~~sa~~~----~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEP-IIPLSAETG----KNIDSAFKIVE 160 (161)
T ss_pred hccCCc-eEEeecCCC----CCHHHHHHHhh
Confidence 333322 333333333 68888888764
No 183
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.67 E-value=3.4e-15 Score=136.00 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--C---------------CcEEEEEeCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--D---------------GQVVNVIDTPGLF 80 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~---------------~~~~~liDTPG~~ 80 (259)
..+.|+++|++++|||||+|+|++...... .+.+.|+......+... . ...+.||||||..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 357899999999999999999998865222 22334443222222110 0 0248899999953
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
. +.......+..+|++++|+|++++....+.+.+..+.. .+ .|+++|+||+|+..
T Consensus 81 ~-----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~-~~----vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 A-----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM-YK----TPFVVAANKIDRIP 135 (590)
T ss_pred h-----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence 2 22223334567899999999997788887777776654 23 39999999999874
No 184
>PLN03127 Elongation factor Tu; Provisional
Probab=99.67 E-value=2e-15 Score=133.96 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=107.8
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCC------Cc-cc---c----cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGR------RA-FK---S----KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~------~~-~~---~----~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
+...+..+|+++|+.++|||||+++|++. .. .. . .....+.|.+.....+. .++..+.|+||||+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh 134 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGH 134 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCc
Confidence 44567789999999999999999999732 10 00 0 11125667766655544 45678999999997
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHH
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLE 158 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~ 158 (259)
.+ +...+.. ....+|++++|+|+..+...++.+.+..+.. ++. | +++|+||+|+.+. ..+.
T Consensus 135 ~~-------f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~-~gi----p~iIvviNKiDlv~~--~~~~ 196 (447)
T PLN03127 135 AD-------YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQ-VGV----PSLVVFLNKVDVVDD--EELL 196 (447)
T ss_pred cc-------hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEeeccCCH--HHHH
Confidence 42 2222222 3345799999999987888888888887766 443 6 5789999998754 3333
Q ss_pred hhhCCCCCchHHHHHHHcCC---cEEEEeCCCc---cccc---chhHHHHHHHHHHHHHH
Q 024985 159 DYLGPECPKPLKEILQLCEN---RRVLFDNKTK---DAAT---RTEQVGKLISLVNSVIL 209 (259)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~---~~~~---~~~~i~eLl~~i~~~~~ 209 (259)
+.+. ..++.++..++. .+.++..++. .+.+ ...++.+|++.+.++++
T Consensus 197 ~~i~----~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 197 ELVE----MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHH----HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3222 134555555432 1222222111 1100 12357888888888765
No 185
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.66 E-value=4.8e-15 Score=115.65 Aligned_cols=164 Identities=15% Similarity=0.053 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|++|+|||||++++.+...... .. ++........+. .++. .+.+|||||..... ...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~--~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YV--PTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDYD-----------RLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CC--CceeeeeEEEEE-ECCEEEEEEEEeCCCccccc-----------ccc
Confidence 4799999999999999999998764221 11 111111111122 2333 57899999964321 112
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh---hC-CCCCchHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY---LG-PECPKPLKE 171 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~---~~-~~~~~~l~~ 171 (259)
......+|++++|+|.+++-+... ..++..+... . ...|+++|+||+|+.+.. ...... .. .-.......
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHHH
Confidence 234668899999999985433333 2345555442 2 235999999999986441 111111 00 000112334
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+....+.. .+|..++..+ .|+.++++.+...
T Consensus 142 ~~~~~~~~-~~~e~Sa~~~----~gi~~~f~~~~~~ 172 (174)
T cd04135 142 LAKEIGAH-CYVECSALTQ----KGLKTVFDEAILA 172 (174)
T ss_pred HHHHcCCC-EEEEecCCcC----CCHHHHHHHHHHH
Confidence 44444432 2455555444 7899999877653
No 186
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.66 E-value=2.6e-15 Score=125.81 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=92.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc----CCC--CCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCChHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK----AGS--SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEF 88 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~----~~~--~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~~~ 88 (259)
-.++|+++|++|.|||||+|+|++....... ..+ ...|........... ++ ..+++|||||+++.-.. ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence 4689999999999999999999988532221 111 123333444433322 22 27999999999987543 33
Q ss_pred HHHHHHHHHh------------------hcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985 89 VSKEIVKCIG------------------MAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE 149 (259)
Q Consensus 89 ~~~~~~~~~~------------------~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~ 149 (259)
.+..+..++. .....+|++||.+.++ +++++.|.+.++.|.+. .++|.|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence 3333333332 1234689999999986 68999999988888763 389999999999
Q ss_pred CCCCcccHHhhh
Q 024985 150 LEDNDETLEDYL 161 (259)
Q Consensus 150 ~~~~~~~~~~~~ 161 (259)
+.. +++.++.
T Consensus 175 lT~--~El~~~K 184 (373)
T COG5019 175 LTD--DELAEFK 184 (373)
T ss_pred CCH--HHHHHHH
Confidence 987 6665543
No 187
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.66 E-value=1.3e-14 Score=117.40 Aligned_cols=165 Identities=13% Similarity=0.034 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|.+|||||||++++++..... .. . .|....+. .+. .++ ..+.||||+|-. .+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~-~y--~-pTi~~~~~~~~~-~~~~~v~L~iwDt~G~e-----------~~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG-SY--V-PTVFENYTASFE-IDKRRIELNMWDTSGSS-----------YYDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-cc--C-CccccceEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHH
Confidence 589999999999999999999776422 11 1 12111111 122 233 478899999942 33333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLK 170 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~ 170 (259)
...+++++|++|+|+|++++-+... ..+...+... .. ..|+++|.||+|+..+. ..+...... -......
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~--~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CP--NAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 4456789999999999985533332 1233333332 22 34999999999986431 111111100 0112334
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+.+..+. ..++..++... ..++.+++..+....
T Consensus 142 ~~ak~~~~-~~y~E~SAk~~---~~~V~~~F~~~~~~~ 175 (222)
T cd04173 142 VLAKQVGA-VSYVECSSRSS---ERSVRDVFHVATVAS 175 (222)
T ss_pred HHHHHcCC-CEEEEcCCCcC---CcCHHHHHHHHHHHH
Confidence 44545443 23555555433 135999998766643
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.65 E-value=1.2e-14 Score=113.45 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeE-EEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCE-MQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|++|||||||++++.+...... . . .|.... ...+. .++ ..+.+|||||... +...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-~--~-~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-Y--V-PTVFENYVADIE-VDGKQVELALWDTAGQED-----------YDRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-C--C-CccccceEEEEE-ECCEEEEEEEEeCCCchh-----------hhhc
Confidence 5899999999999999999998764221 1 1 111111 11222 233 3689999999532 1112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLK 170 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~ 170 (259)
....+.++|++++|+|++++-+... ..++..+.... ...|+++|+||+|+.... ....+.... ......+
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~~~i~~~~~~~v~~~~~~ 141 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDE-HTRRELAKMKQEPVKPEEGR 141 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccCh-hhhhhhhhccCCCccHHHHH
Confidence 2234568899999999984433222 22344444321 235999999999976431 111111110 0011233
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.+...++. ..++..++..+ .++.++++.+...
T Consensus 142 ~~~~~~~~-~~~~~~Sa~~~----~~v~~lf~~l~~~ 173 (175)
T cd01870 142 DMANKIGA-FGYMECSAKTK----EGVREVFEMATRA 173 (175)
T ss_pred HHHHHcCC-cEEEEeccccC----cCHHHHHHHHHHH
Confidence 44444433 23444444433 7999999887653
No 189
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.65 E-value=4.4e-15 Score=123.53 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------------CCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------------SSGVTKTCEMQRTMLKDGQVVNVIDTPG 78 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------------~~~~T~~~~~~~~~~~~~~~~~liDTPG 78 (259)
.++|+++|++|+|||||+++|+.......... ..+.|.......+. ..+..+.+|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCC
Confidence 36899999999999999999985322111100 01222223333344 4678999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..+. ...... ....+|++|+|+|++.+.......+++.... .+ .|+++++||+|....
T Consensus 81 ~~df-------~~~~~~----~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDF-------SEDTYR----TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RG----IPIITFINKLDREGR 138 (267)
T ss_pred chHH-------HHHHHH----HHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cC----CCEEEEEECCccCCC
Confidence 6532 112222 2345699999999987776666666655433 33 399999999997654
No 190
>PRK09866 hypothetical protein; Provisional
Probab=99.65 E-value=3e-14 Score=127.77 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=54.2
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
..++|+||||++.+.. ..+.+.+.+ ....+|+||||+|++...+..+..+++.+.+. ++ ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence 3689999999986432 112333333 35567999999999867888888888888763 32 139999999999
Q ss_pred CCCC
Q 024985 149 ELED 152 (259)
Q Consensus 149 ~~~~ 152 (259)
..+.
T Consensus 301 l~dr 304 (741)
T PRK09866 301 QQDR 304 (741)
T ss_pred CCCc
Confidence 8743
No 191
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.65 E-value=9.4e-15 Score=116.58 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=90.9
Q ss_pred EcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE--EEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985 25 VGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ--RTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK 101 (259)
Q Consensus 25 ~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~--~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (259)
+|.+|||||||+++++.... ... ...|...... .+.. .....+.||||||.. .+......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e-----------~~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE-----------KFGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCC---CCCceeEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhhhHHHh
Confidence 69999999999999986553 111 1122222221 1121 123589999999953 2333334467
Q ss_pred CCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcE
Q 024985 102 DGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180 (259)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (259)
.++|++|+|+|++++.+... ..|+..+.+.. . ..|+++|+||+|+... . .. .+.+ .+....+ +
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~~--~-v~-------~~~~-~~~~~~~--~ 129 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVKDR--K-VK-------AKSI-TFHRKKN--L 129 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccccc--c-CC-------HHHH-HHHHHcC--C
Confidence 78899999999986544433 34555555532 2 3499999999997532 1 00 1111 2223323 3
Q ss_pred EEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 181 VLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+|..++..+ .++.+++..+...+.+
T Consensus 130 ~~~e~SAk~~----~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 130 QYYDISAKSN----YNFEKPFLWLARKLIG 155 (200)
T ss_pred EEEEEeCCCC----CCHHHHHHHHHHHHHh
Confidence 3555555544 7899999998876644
No 192
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.6e-15 Score=114.41 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=106.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
+.-++|+++|.||+|||-|+..++..+.-...-++.++........ .++ ....||||+|. +.+.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~---vd~k~vkaqIWDTAGQ-----------ERyr 77 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVN---VDGKTVKAQIWDTAGQ-----------ERYR 77 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeecee---ecCcEEEEeeecccch-----------hhhc
Confidence 4558999999999999999999987775333334444433322222 333 37799999993 3455
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.....+++++.+.++|+|++.+.+.+. .+||+.|+...... .++++|.||+|+..- ..+ ..+.-+...
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~l--raV-------~te~~k~~A 146 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHL--RAV-------PTEDGKAFA 146 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhc--ccc-------chhhhHhHH
Confidence 555678899999999999985655543 56677776654443 489999999998752 111 112233344
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+. +..+++..++.+..+...-+..++..|...+.++
T Consensus 147 e~--~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 147 EK--EGLFFLETSALDATNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred Hh--cCceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence 43 2344556665555344455555666665555443
No 193
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=1e-14 Score=128.04 Aligned_cols=170 Identities=17% Similarity=0.176 Sum_probs=107.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~ 82 (259)
.+..+|+++|..++|||||+++|++..... ......+.|.......+. .++..+.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH--
Confidence 566899999999999999999998731100 001134566665544443 356789999999953
Q ss_pred CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEE-EEEeCCCCCCCCcccHHhhh
Q 024985 83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI-VVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-vV~nk~D~~~~~~~~~~~~~ 161 (259)
.+...+......+|++++|+|+..+....+.+.+..+.. ++. |.+ +++||+|+.+. ....+.+
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~-~g~----p~iiVvvNK~D~~~~--~~~~~~~ 150 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELV 150 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH-cCC----CEEEEEEeecCCcch--HHHHHHH
Confidence 344444445678899999999987888888888887766 443 765 68999998753 2222222
Q ss_pred CCCCCchHHHHHHHcCC-----cEEEEeCCCcc----cccchhHHHHHHHHHHHHHH
Q 024985 162 GPECPKPLKEILQLCEN-----RRVLFDNKTKD----AATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~i~eLl~~i~~~~~ 209 (259)
. ..++.++..++. .++..++.... .....+++..|++.|..+++
T Consensus 151 ~----~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 151 E----MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred H----HHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 1 245566665442 22333332211 01122367788888887654
No 194
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=7e-15 Score=129.23 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=104.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc----c----cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGR------RAFK----S----KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~------~~~~----~----~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
.++..+|+++|..++|||||+++|++. ..+. . .....+.|.+.....+. .++..+.||||||..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHH
Confidence 456799999999999999999999843 1100 0 00124666666554443 3566899999999532
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
+...+......+|++++|+|++.+....+.+.+..+.. .+. .++++|+||+|+.+. +...+.+
T Consensus 88 -----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~-~gi---~~iIvvvNK~Dl~~~--~~~~~~~ 150 (394)
T TIGR00485 88 -----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ-VGV---PYIVVFLNKCDMVDD--EELLELV 150 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CEEEEEEEecccCCH--HHHHHHH
Confidence 22222333457799999999987788888888887765 343 245578999998754 2222222
Q ss_pred CCCCCchHHHHHHHcCCc---EEEEeCCCccc----ccchhHHHHHHHHHHHHHH
Q 024985 162 GPECPKPLKEILQLCENR---RVLFDNKTKDA----ATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~----~~~~~~i~eLl~~i~~~~~ 209 (259)
. ..++.+++..+.. +.++..++..+ .....++.+|++.+..+++
T Consensus 151 ~----~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 151 E----MEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred H----HHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 1 1355556555421 22333332211 1222456777777776553
No 195
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-14 Score=112.75 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=109.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
+.....+|+++|.+|||||+++-.+.......+-.++.+... ....+. .++ ..+.+|||.|- +.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDF--k~kti~-l~g~~i~lQiWDtaGQ-----------er 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDF--KIKTIE-LDGKKIKLQIWDTAGQ-----------ER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEE--EEEEEE-eCCeEEEEEEEEcccc-----------hh
Confidence 345568999999999999999999987665222222222222 222222 334 37899999993 35
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
+......++++|+++++|+|+++.-+.+ ...|++.+.+.-.. ..+.++|.||+|+... .. -....-.+
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~--R~-------V~~e~ge~ 142 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEK--RQ-------VSKERGEA 142 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeecccccccc--cc-------ccHHHHHH
Confidence 5566667788999999999998554443 35688888876544 3499999999997753 11 12335667
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
++...+-. ++..+++.+ .+|.+.+-.+...+.
T Consensus 143 lA~e~G~~--F~EtSAk~~----~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 143 LAREYGIK--FFETSAKTN----FNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHhCCe--EEEccccCC----CCHHHHHHHHHHHHH
Confidence 77777655 445555444 578887776666554
No 196
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.3e-15 Score=126.10 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccc-----cCCCCCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCChHH--
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKS-----KAGSSGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEF-- 88 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~-----~~~~~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~~~-- 88 (259)
.++++++|++|.|||||||+|++...... ....+..|........... +| ..+++|||||+++.......
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999998854322 1111222333444433322 23 37999999999987543321
Q ss_pred -----HHHHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985 89 -----VSKEIVKCIGM---------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN 153 (259)
Q Consensus 89 -----~~~~~~~~~~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~ 153 (259)
+..++..++.. ....+|++||.+.++ +++.+.|.+.++.+... .++|.|+.|+|.+..
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT~- 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLTK- 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCCH-
Confidence 22222222211 123689999999986 56999999988888653 389999999999987
Q ss_pred cccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985 154 DETLEDYLGPECPKPLKEILQLCENRRVLFDNKT 187 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (259)
+++..+.. .+.+.++.+.-+++.|....
T Consensus 174 -~El~~~K~-----~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 174 -DELNQFKK-----RIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred -HHHHHHHH-----HHHHHHHHcCcceecCCCCc
Confidence 66765544 57777777777777776653
No 197
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.64 E-value=2.4e-15 Score=117.71 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=100.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|..||||||+++.|....... ..+|.......+. ..+..+.++|.+|-. .+...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~-----------~~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQE-----------SFRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSG-----------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEeccccc-----------ccccc
Confidence 567899999999999999999998765422 2234444444444 577899999999942 22333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l~~~~ 173 (259)
....+..+|++|||+|.++.-. -.+..+.|.+++... ...|++|++||.|....- ..++.+.+.- ..+.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~--l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~ 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPER--LQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGG--HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT
T ss_pred ceeeccccceeEEEEeccccee--ecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc
Confidence 3455678899999999983221 112333334433322 235999999999976541 1223333221 1111
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
...++.++..++..+ .|+.|.+++|.+.
T Consensus 147 --~~~~~~v~~~sa~~g----~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 --NKRPWSVFSCSAKTG----EGVDEGLEWLIEQ 174 (175)
T ss_dssp --SSSCEEEEEEBTTTT----BTHHHHHHHHHHH
T ss_pred --cCCceEEEeeeccCC----cCHHHHHHHHHhc
Confidence 134566666666555 7999999988764
No 198
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.63 E-value=1e-14 Score=118.31 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=75.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCC-------------CCCcceeeEE-----------------------EEEE
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAG-------------SSGVTKTCEM-----------------------QRTM 64 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~-------------~~~~T~~~~~-----------------------~~~~ 64 (259)
+|+++|..++|||||++.+..... ..+.. ..+.|..... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 588999999999999999985322 11000 0111110000 0111
Q ss_pred eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
...+..+.++||||... +.......+. ...+|++++|+|++.++...+..++.++.. .+. |+++|+
T Consensus 80 ~~~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~-~~i----p~ivvv 145 (224)
T cd04165 80 EKSSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALA-LNI----PVFVVV 145 (224)
T ss_pred eeCCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CEEEEE
Confidence 23467899999999532 2222222221 135799999999988889999999998876 443 899999
Q ss_pred eCCCCCCC
Q 024985 145 TGGNELED 152 (259)
Q Consensus 145 nk~D~~~~ 152 (259)
||+|+...
T Consensus 146 NK~D~~~~ 153 (224)
T cd04165 146 TKIDLAPA 153 (224)
T ss_pred ECccccCH
Confidence 99998754
No 199
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.63 E-value=9.3e-15 Score=112.63 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
+|+++|.+|||||||++++.+.........+.+. ......+. .++ ..+.+|||||... +.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~l~i~D~~g~~~-----------~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVS-IDGKPVNLEIWDTSGQER-----------FDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEE-ETTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccc--cccccccc-cccccccccccccccccc-----------cccccc
Confidence 6899999999999999999977642211111111 12222222 233 3799999999431 111222
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
..+..+|++|+|+|.+++-+... ..++..+....+. ..|++||.||.|+.... .+ .....+.+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~~--~v-------~~~~~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDER--EV-------SVEEAQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGGS--SS-------CHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccceeeeccccccccc--cc-------hhhHHHHHHHHhC
Confidence 34567799999999984433222 3555556554442 24999999999977521 11 1124556666666
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..++..++. .+ .++.+++..+.+.+
T Consensus 136 ~~~~e~Sa~--~~----~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 136 VPYFEVSAK--NG----ENVKEIFQELIRKI 160 (162)
T ss_dssp SEEEEEBTT--TT----TTHHHHHHHHHHHH
T ss_pred CEEEEEECC--CC----CCHHHHHHHHHHHH
Confidence 444444433 33 68888887765543
No 200
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.63 E-value=1.8e-14 Score=112.48 Aligned_cols=162 Identities=17% Similarity=0.050 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
++|+++|++|+|||||++++.+.... ... .+++......... .++ ..+.+|||||... +....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEY--VPTAFDNFSVVVL-VDGKPVRLQLCDTAGQDE-----------FDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCC--CCceeeeeeEEEE-ECCEEEEEEEEECCCChh-----------hcccc
Confidence 47999999999999999999876542 221 1211111111122 233 4788999999632 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLKE 171 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~~ 171 (259)
.....++|++|+|+|++++.+... ..++..+.... . ..|+++|+||+|+.... .....+... -.......
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-P--KAPIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 345678899999999985544333 24555555421 1 24999999999986431 111111110 00112334
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
+.+..+. ..++..++..+ .++.+|++.+.
T Consensus 142 ~a~~~~~-~~~~e~Sa~~~----~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGA-CEYIECSALTQ----KNLKEVFDTAI 170 (173)
T ss_pred HHHHhCC-CeEEEEeCCCC----CCHHHHHHHHH
Confidence 4444333 12444444433 78999988753
No 201
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=4.9e-14 Score=113.96 Aligned_cols=162 Identities=15% Similarity=0.051 Sum_probs=91.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSK 91 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~ 91 (259)
......+|+++|++|||||||++.++......... .|....+..... .....+.+|||||....
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------- 71 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYI----PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------- 71 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCC----CccceEEEEEEEEECCeEEEEEEEECCCchhh---------
Confidence 34456899999999999999997655443211111 122222221111 22358899999994321
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
.......+..++++++|+|++++.+... ..++..+.... . ..|+++|+||+|+... .. .....
T Consensus 72 --~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~~i~lv~nK~Dl~~~--~~---------~~~~~ 135 (215)
T PTZ00132 72 --GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E--NIPIVLVGNKVDVKDR--QV---------KARQI 135 (215)
T ss_pred --hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccCccc--cC---------CHHHH
Confidence 1111223456799999999985544433 23444444332 1 2488999999997532 10 11112
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+.+..+.. ++..++..+ .++.+++..|...+..+
T Consensus 136 ~~~~~~~~~--~~e~Sa~~~----~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 136 TFHRKKNLQ--YYDISAKSN----YNFEKPFLWLARRLTND 170 (215)
T ss_pred HHHHHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHhhc
Confidence 233333333 344444333 67888888877766554
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=4.4e-14 Score=129.51 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=95.5
Q ss_pred cCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 024985 26 GRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIH 105 (259)
Q Consensus 26 G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (259)
|.+|+|||||+|+++|... .. ...+++|.+.....+. .++..+.+|||||.++...... .+.+.... .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v-~n~pG~Tv~~~~~~i~-~~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TV-GNWPGVTVEKKEGKLG-FQGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-ee-cCCCCeEEEEEEEEEE-ECCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8999999999999999874 22 2345667666555554 5677899999999876433211 11122211 1134679
Q ss_pred EEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeC
Q 024985 106 AVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDN 185 (259)
Q Consensus 106 ~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 185 (259)
++++|+|++ .+.. ...+...+.+ . ..|+++|+||+|+.+.. .. ....+.+.+..+..++..+.
T Consensus 75 vvI~VvDat-~ler-~l~l~~ql~~-~----~~PiIIVlNK~Dl~~~~--~i--------~~d~~~L~~~lg~pvv~tSA 137 (591)
T TIGR00437 75 LVVNVVDAS-NLER-NLYLTLQLLE-L----GIPMILALNLVDEAEKK--GI--------RIDEEKLEERLGVPVVPTSA 137 (591)
T ss_pred EEEEEecCC-cchh-hHHHHHHHHh-c----CCCEEEEEehhHHHHhC--CC--------hhhHHHHHHHcCCCEEEEEC
Confidence 999999998 3332 2222233332 2 24999999999986431 11 11234555555555544554
Q ss_pred CCcccccchhHHHHHHHHHHHHH
Q 024985 186 KTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 186 ~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.. + +|+++|++.+.+..
T Consensus 138 ~t--g----~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 138 TE--G----RGIERLKDAIRKAI 154 (591)
T ss_pred CC--C----CCHHHHHHHHHHHh
Confidence 33 2 78999999887654
No 203
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.62 E-value=8.9e-15 Score=122.23 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccC--CC--------------CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKA--GS--------------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~--~~--------------~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
+|+++|.+|+|||||+|+|++........ .. .+.|.......+. .++..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHH---
Confidence 58999999999999999997543211000 00 1222222223333 4677899999999642
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
....... +...+|++++|+|++.+........++.+.. .+ .|.++|+||+|....
T Consensus 77 ----f~~~~~~----~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~~----~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 ----FVGETRA----ALRAADAALVVVSAQSGVEVGTEKLWEFADE-AG----IPRIIFINKMDRERA 131 (268)
T ss_pred ----HHHHHHH----HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCccCCC
Confidence 1122222 3345699999999987777666666666554 33 399999999997754
No 204
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.62 E-value=1.7e-14 Score=108.75 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=84.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
++|++|+|||||+|+|++....... ...|. ......... .+..+.+|||||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~---~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE---YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc---cccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 5899999999999999987752111 11222 222222211 24689999999965321 111334
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcE
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (259)
...+|++++|+|++...+..+...+.............|+++|+||+|..... ...... ............+
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~~~ 137 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGVPY 137 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCCcE
Confidence 56779999999998544443332220111111222345999999999987552 111110 0222233333344
Q ss_pred EEEeCCCcccccchhHHHHHHHHHH
Q 024985 181 VLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
+..++... .++.+++..|.
T Consensus 138 ~~~s~~~~------~~i~~~~~~l~ 156 (157)
T cd00882 138 FETSAKTG------ENVEELFEELA 156 (157)
T ss_pred EEEecCCC------CChHHHHHHHh
Confidence 44444322 57888887764
No 205
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.62 E-value=1.8e-14 Score=109.09 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=103.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC---CcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS---GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~---~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
..++|+++|.+|+|||||+|.+.......---.+. ..|++..+. ..-..+.||||.|- +.+.
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd----~~~vtlQiWDTAGQ-----------ERFq 72 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD----DRSVTLQIWDTAGQ-----------ERFQ 72 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc----CeEEEEEEEecccH-----------HHhh
Confidence 45899999999999999999998776422211122 233333322 12237899999993 3555
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHh-cccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLF-GKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~-~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
+.-...++++|+.++|+|++..-+.+ +..--+.|...- ..+-.-|+||+.||+|..... + .....+.
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--~--------r~VS~~~ 142 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--S--------RQVSEKK 142 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--c--------ceeeHHH
Confidence 55566789999999999998443333 222222333221 122334999999999976541 1 1122233
Q ss_pred HHHHc--CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 172 ILQLC--ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 172 ~~~~~--~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
-...| .+.+++|..+++.. .++.+.++.+....-.+..
T Consensus 143 Aq~WC~s~gnipyfEtSAK~~----~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 143 AQTWCKSKGNIPYFETSAKEA----TNVDEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHhcCCceeEEeccccc----ccHHHHHHHHHHHHHhccc
Confidence 33334 34577888887665 6788888877766555443
No 206
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.61 E-value=1.3e-14 Score=132.98 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccc------cC-------CCCCcceeeEEEEEEee--CC--cEEEEEeCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKS------KA-------GSSGVTKTCEMQRTMLK--DG--QVVNVIDTPGLFD 81 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~------~~-------~~~~~T~~~~~~~~~~~--~~--~~~~liDTPG~~~ 81 (259)
.++|+++|.+++|||||+++|+....... .. ...+.|.......+.+. ++ ..+.||||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 57999999999999999999986431111 10 01245554443333332 22 5789999999754
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
. ...+..++..+|++|+|+|++++.+..+...+..+.+ .+ .|+++|+||+|+.... ...
T Consensus 83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~~----ipiIiViNKiDl~~~~---~~~-- 141 (595)
T TIGR01393 83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-ND----LEIIPVINKIDLPSAD---PER-- 141 (595)
T ss_pred H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcCCCccC---HHH--
Confidence 2 2222334456799999999997777776554443332 22 3899999999975431 111
Q ss_pred CCCCCchHHHHHHHcCCcE-EEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 162 GPECPKPLKEILQLCENRR-VLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...++.+..+... .++..++..+ .|+.+|++.|.+.++..
T Consensus 142 ------~~~el~~~lg~~~~~vi~vSAktG----~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 142 ------VKKEIEEVIGLDASEAILASAKTG----IGIEEILEAIVKRVPPP 182 (595)
T ss_pred ------HHHHHHHHhCCCcceEEEeeccCC----CCHHHHHHHHHHhCCCC
Confidence 1122223233211 1233343333 78999999998887654
No 207
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.61 E-value=2e-14 Score=116.89 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=81.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeE--------------------------------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCE-------------------------------------- 59 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~-------------------------------------- 59 (259)
..+.|+++|++|+||||++++|+|...++.+.. .+|+.+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g--~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCC--cccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 446899999999999999999999764333211 1111100
Q ss_pred -------------EEEEEeeCCcEEEEEeCCCCCCCC--CChHHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHhH-H
Q 024985 60 -------------MQRTMLKDGQVVNVIDTPGLFDSS--ADSEFVSKEIVKCIGMAKD-GIHAVLLVFSVRNRFSEEG-G 122 (259)
Q Consensus 60 -------------~~~~~~~~~~~~~liDTPG~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~il~v~d~~~~~~~~~-~ 122 (259)
...+...+...+.||||||+.... .........+...+..+.. ..+++|+|+|++..+...+ .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 000111122469999999997432 1123344455555444444 4469999999987777766 4
Q ss_pred HHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 123 AAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 123 ~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.+.+.+.. .+ .++++|+||+|....
T Consensus 183 ~ia~~ld~-~~----~rti~ViTK~D~~~~ 207 (240)
T smart00053 183 KLAKEVDP-QG----ERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHH-cC----CcEEEEEECCCCCCc
Confidence 66666654 23 499999999999865
No 208
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.61 E-value=2e-14 Score=113.55 Aligned_cols=149 Identities=18% Similarity=0.229 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-----CCCcceeeEEEEEEe-eCCc--EEEEEeCCCCCCCCCChHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-----SSGVTKTCEMQRTML-KDGQ--VVNVIDTPGLFDSSADSEFVS 90 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-----~~~~T~~~~~~~~~~-~~~~--~~~liDTPG~~~~~~~~~~~~ 90 (259)
.++|++||.+|.|||||+|.|+...+..+... +.+.|+......... .++. .+.+||||||+|.-. ++..+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-NDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-ccchh
Confidence 57999999999999999999987665433221 223333333222221 2333 799999999998643 33333
Q ss_pred HHHHHHHhh------------------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 91 KEIVKCIGM------------------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 91 ~~~~~~~~~------------------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
+.+.+++.. ....+|+++|.+.++ ..+.+.|.++++.|.+. .+++.|+-|.|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeeccccc
Confidence 333333321 123679999999987 66889999999998875 38999999999886
Q ss_pred CCcccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985 152 DNDETLEDYLGPECPKPLKEILQLCENRRV 181 (259)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (259)
- ++..+|.. .+++-+...+..++
T Consensus 199 l--eEr~~Fkq-----rI~~el~~~~i~vY 221 (336)
T KOG1547|consen 199 L--EERSAFKQ-----RIRKELEKHGIDVY 221 (336)
T ss_pred H--HHHHHHHH-----HHHHHHHhcCcccc
Confidence 5 44444432 45555555554433
No 209
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.61 E-value=3.9e-14 Score=112.04 Aligned_cols=165 Identities=18% Similarity=0.117 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|++|+|||||++.+....... .. . .|....+ ..+. .++ ..+.+|||||...... +
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~--~-~t~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~~--------~--- 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EY--H-PTVFENYVTDCR-VDGKPVQLALWDTAGQEEYER--------L--- 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-cc--C-CcccceEEEEEE-ECCEEEEEEEEECCCChhccc--------c---
Confidence 489999999999999999998555321 11 1 1211111 1122 233 3578999999643211 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC--CCCchHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP--ECPKPLKEI 172 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~--~~~~~l~~~ 172 (259)
.......+|++++|+++++.-+... ..++..+..... ..|+++|+||+|+.... ...++.... ........+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence 1123467799999999984433332 235565554332 35999999999975431 111110000 001123344
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+..+. ..+|..++..+ .++.++++.+.+.+.
T Consensus 142 ~~~~~~-~~~~e~Sa~~~----~~v~~~f~~l~~~~~ 173 (187)
T cd04129 142 AKEIGA-KKYMECSALTG----EGVDDVFEAATRAAL 173 (187)
T ss_pred HHHhCC-cEEEEccCCCC----CCHHHHHHHHHHHHh
Confidence 444432 23455555544 799999998876543
No 210
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=7.2e-14 Score=111.17 Aligned_cols=166 Identities=14% Similarity=0.022 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhCCCccccc-CCCCCccee----eEEEE------EEeeCC--cEEEEEeCCCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGN-SILGRRAFKSK-AGSSGVTKT----CEMQR------TMLKDG--QVVNVIDTPGLFDSSA 84 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin-~l~~~~~~~~~-~~~~~~T~~----~~~~~------~~~~~~--~~~~liDTPG~~~~~~ 84 (259)
..+|+++|.+|||||||++ .+.+....... ......|.. ..... ....++ ..+.||||||....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3689999999999999996 55443221000 000111211 10000 001222 48999999995421
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh---
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED--- 159 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~--- 159 (259)
+ ...++.++|++|+|+|++++.+.... .|+..+.... . ..|+++|.||+|+..........
T Consensus 80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccccccchhhhccc
Confidence 1 12357789999999999866555443 3566665533 2 34999999999975421000000
Q ss_pred -------hhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 160 -------YLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 160 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
-...-.....+.+.+..+. .+|..++.++ .++.++++.+..
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~~--~~~E~SAkt~----~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELGI--PYYETSVVTQ----FGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhCC--EEEEcCCCCC----CCHHHHHHHHHH
Confidence 0000112234555665554 3566666554 789999987754
No 211
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.5e-14 Score=104.60 Aligned_cols=161 Identities=18% Similarity=0.185 Sum_probs=102.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
-++|+++|..|+|||.|+..++..-.++....+.++........+. .+...+.+|||+|- +.+.+...
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagq-----------erfrsitq 74 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQ-----------ERFRSITQ 74 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccch-----------HHHHHHHH
Confidence 3689999999999999999998666544444444544444444332 23358999999993 35666666
Q ss_pred hcCCCccEEEEEEeCCCCCCH-hHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSE-EGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.+++.+|++|+|.|++...+. --.+||..+.+.-.... -.|+|.||+|+.+. .++-+.+. ++..+.
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qig-------eefs~~-- 141 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIG-------EEFSEA-- 141 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHH-------HHHHHh--
Confidence 778889999999999844333 33567777777544322 56899999998754 22222111 111111
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+..+++..++... .+++.|+..+..-+
T Consensus 142 qdmyfletsakea----~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 142 QDMYFLETSAKEA----DNVEKLFLDLACRL 168 (213)
T ss_pred hhhhhhhhcccch----hhHHHHHHHHHHHH
Confidence 2233455555544 67888877655433
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.60 E-value=6.8e-14 Score=127.94 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=77.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-----CC------------cEEEEEeCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-----DG------------QVVNVIDTPGL 79 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-----~~------------~~~~liDTPG~ 79 (259)
..++.|+++|++|+|||||+|+|.+...... .+.+.|+.......... .+ ..+.||||||.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~--~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAK--EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccC--CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3457899999999999999999998764222 22333333322211100 00 12789999996
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
.+ +..........+|++++|+|+++++...+...+..+.. .+ .|+++++||+|+.
T Consensus 82 e~-----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~----vpiIvviNK~D~~ 136 (586)
T PRK04004 82 EA-----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-RK----TPFVVAANKIDRI 136 (586)
T ss_pred HH-----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcCCc
Confidence 42 22222234456799999999997777887777776654 23 3999999999985
No 213
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=5e-14 Score=106.98 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=104.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+++++|.+|||||.|+-.++.....+....+.|...-.....+. .....+.+|||.|.. .+.+.
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe-----------~frsv 71 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQE-----------SFRSV 71 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcH-----------HHHHH
Confidence 345789999999999999999999888654444333333222222222 233489999999943 55556
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
...+++++-+.|+|+|++++-+... ..||.-++..... +.-++++.||+|+... ..+. .+.-....++
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~~r--R~Vs-------~EEGeaFA~e 140 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLEAR--REVS-------KEEGEAFARE 140 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhhcc--cccc-------HHHHHHHHHH
Confidence 6677889999999999996655443 3455555553322 3378899999998754 1111 2233345555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.+ ..++..++... ++++|.+..+...
T Consensus 141 hg--LifmETSakt~----~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 141 HG--LIFMETSAKTA----ENVEEAFINTAKE 166 (216)
T ss_pred cC--ceeehhhhhhh----hhHHHHHHHHHHH
Confidence 33 33445555544 8899988766543
No 214
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.60 E-value=1.6e-14 Score=128.24 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc-----------------------------cCCCCCcceeeEEEEEEee
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS-----------------------------KAGSSGVTKTCEMQRTMLK 66 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~ 66 (259)
..+..+|+++|.+++|||||+++|+....... .....+.|.+.....+. .
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-T 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-c
Confidence 45678999999999999999999984221000 00123566666665554 4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC---CCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR---FSEEGGAAIHSLESLFGKKVFDYMIVV 143 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ivV 143 (259)
++..+.||||||.. .+...+......+|++++|+|++++ ........+..+ ..++. .+++||
T Consensus 83 ~~~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEE
Confidence 66799999999942 2333333345678999999999866 333333333333 22342 379999
Q ss_pred EeCCCCCCC
Q 024985 144 FTGGNELED 152 (259)
Q Consensus 144 ~nk~D~~~~ 152 (259)
+||+|+.+.
T Consensus 148 iNK~Dl~~~ 156 (426)
T TIGR00483 148 INKMDSVNY 156 (426)
T ss_pred EEChhccCc
Confidence 999998753
No 215
>PLN03126 Elongation factor Tu; Provisional
Probab=99.60 E-value=4.2e-14 Score=126.26 Aligned_cols=140 Identities=17% Similarity=0.228 Sum_probs=92.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
..+..+|+++|.+++|||||+++|++..... ......+.|.+.....+. .++..+.+|||||..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~- 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHA- 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHH-
Confidence 4566899999999999999999998532100 011123555555444444 467799999999953
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
.+...+......+|++++|+|+..+...++.+.+..+.. .|. .++++++||+|+.+. +...+.+
T Consensus 156 ----------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~gi---~~iIvvvNK~Dl~~~--~~~~~~i 219 (478)
T PLN03126 156 ----------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VGV---PNMVVFLNKQDQVDD--EELLELV 219 (478)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEecccccCH--HHHHHHH
Confidence 233333334457799999999988888888888877655 453 137889999998753 3333322
Q ss_pred CCCCCchHHHHHHHcC
Q 024985 162 GPECPKPLKEILQLCE 177 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~ 177 (259)
. ..++.++..++
T Consensus 220 ~----~~i~~~l~~~g 231 (478)
T PLN03126 220 E----LEVRELLSSYE 231 (478)
T ss_pred H----HHHHHHHHhcC
Confidence 2 25666666653
No 216
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.60 E-value=4.4e-15 Score=115.32 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=71.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEE--------------------------------------
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRT-------------------------------------- 63 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~-------------------------------------- 63 (259)
|+++|..++|||||||+|+|....+.+.. ++|..+.....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~--~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG--PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS 78 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS--STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc--ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence 78999999999999999999987665543 22222111110
Q ss_pred -----------------EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHH
Q 024985 64 -----------------MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIH 126 (259)
Q Consensus 64 -----------------~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~ 126 (259)
.......+.||||||+.+....... .+.+ +...+|++|||+++++.++..+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~----~~~~~d~vi~V~~~~~~~~~~~~~~l~ 151 (168)
T PF00350_consen 79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEE----YLPKADVVIFVVDANQDLTESDMEFLK 151 (168)
T ss_dssp HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHH----HHSTTEEEEEEEETTSTGGGHHHHHHH
T ss_pred ccccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHH----hhccCCEEEEEeccCcccchHHHHHHH
Confidence 0011224999999999764332222 2222 235679999999999767766655555
Q ss_pred HHHHHhcccccCeEEEEEeCC
Q 024985 127 SLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 127 ~l~~~~~~~~~~~~ivV~nk~ 147 (259)
....... ..+++|+||+
T Consensus 152 ~~~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 152 QMLDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HHHTTTC----SSEEEEEE-G
T ss_pred HHhcCCC----CeEEEEEcCC
Confidence 4444333 3799999984
No 217
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4e-14 Score=124.00 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=121.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
.+|.|.++|....|||||+-+|-+..+.. ....+.|+....+.+... +...+.|+||||.. .|..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-----------AFt~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-----------AFTA 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-----------HHHH
Confidence 45789999999999999999999988744 345789999999988854 34799999999943 4554
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+-...+.-+|+++||+++++++.+++.+.++.++. .+. |++|++||+|+.+.++.....-+.+ .--..+.
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~-a~v----P~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~ 140 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKA-AGV----PIVVAINKIDKPEANPDKVKQELQE-----YGLVPEE 140 (509)
T ss_pred HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHH-CCC----CEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhh
Confidence 44455556799999999999999999999998887 454 9999999999996643332221111 0112344
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+++-..++..++..+ .|+.+|+..|.-.
T Consensus 141 ~gg~v~~VpvSA~tg----~Gi~eLL~~ill~ 168 (509)
T COG0532 141 WGGDVIFVPVSAKTG----EGIDELLELILLL 168 (509)
T ss_pred cCCceEEEEeeccCC----CCHHHHHHHHHHH
Confidence 555566666776555 8999999987543
No 218
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.59 E-value=2.6e-14 Score=114.51 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
++|+++|++|||||||++.|.+....... .+.+ ........ ..+..+.+|||||... +...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~---~s~~--~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV---TSIE--PNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDK 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc---CcEe--ecceEEEeecCCCCceEEEEECCCCHH-----------HHHH
Confidence 47999999999999999999987642221 1111 11111111 1356899999999542 2222
Q ss_pred HhhcCCCc-cEEEEEEeCCCCCCHhHHHHHHHHHHHh----cccccCeEEEEEeCCCCCCC
Q 024985 97 IGMAKDGI-HAVLLVFSVRNRFSEEGGAAIHSLESLF----GKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 97 ~~~~~~~~-~~il~v~d~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ivV~nk~D~~~~ 152 (259)
+...+..+ +++|||+|+.... ..-....+++..++ ......|++||+||+|+...
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 22334455 9999999998432 21122233332221 11123599999999998754
No 219
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.59 E-value=2.2e-15 Score=110.24 Aligned_cols=116 Identities=18% Similarity=0.152 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFK--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
+|+++|.+|||||||+++|++..... ......+.+......... .....+.++|++|........ ...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~-------~~~-- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-GDRQSLQFWDFGGQEEFYSQH-------QFF-- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-TEEEEEEEEEESSSHCHHCTS-------HHH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-CCceEEEEEecCccceecccc-------cch--
Confidence 69999999999999999999887641 111112222222222111 222358899999963211110 111
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
...+|++++|+|+++..+... ..++.++....+.....|+++|.||.|
T Consensus 71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 224599999999984433333 345556666544333359999999998
No 220
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.59 E-value=4e-15 Score=127.29 Aligned_cols=172 Identities=22% Similarity=0.216 Sum_probs=93.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC---cceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
..+.+|+|+|.+|+|||||||+|.|-..-..+..+.| +|.....+.. +.-.++++||.||++....+.+.+.+.+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 4568999999999999999999987543223333333 3444444432 3334799999999987666555444433
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC-CC----CcccHHhhhCCCCCch
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL-ED----NDETLEDYLGPECPKP 168 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~-~~----~~~~~~~~~~~~~~~~ 168 (259)
. ....|.+|++.+ + +++..+..+++.+.+. |+ |+++|-||+|.. .. .+.+..+ .+.
T Consensus 111 ----~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~Dl~~~~~~~p~~f~~------e~~ 171 (376)
T PF05049_consen 111 ----K--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDSDLYNERRRKPRTFNE------EKL 171 (376)
T ss_dssp ----T--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--H------HTH
T ss_pred ----c--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccccHhhhhccCCcccCH------HHH
Confidence 1 223487766554 4 8999999999999884 54 999999999962 10 0011110 123
Q ss_pred HHHHHHHc----------CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 169 LKEILQLC----------ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 169 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
++.+.+.| ..+++++++..... -.+..|.+.+..-++....
T Consensus 172 L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~----yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 172 LQEIRENCLENLQKAGVSEPQVFLVSSFDLSK----YDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHHHHHHHHHCTT-SS--EEEB-TTTTTS----TTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHHHHcCCCcCceEEEeCCCccc----CChHHHHHHHHHHhHHHHH
Confidence 33333333 23556666654332 5688888888777666543
No 221
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=5.3e-14 Score=129.07 Aligned_cols=164 Identities=18% Similarity=0.169 Sum_probs=98.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee----CCcEEEEEeCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL 79 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~----~~~~~~liDTPG~ 79 (259)
...++|+++|..++|||||+.+|+........ ....+.|.......+.+. .+..+.||||||.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 35679999999999999999999753211000 011244444433333322 2457999999997
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~ 159 (259)
.+. ...+.. +...+|++|+|+|++++....+...+..+.. .+ .|+++|+||+|+.... ...
T Consensus 85 ~dF-------~~~v~~----sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~~----lpiIvViNKiDl~~a~---~~~ 145 (600)
T PRK05433 85 VDF-------SYEVSR----SLAACEGALLVVDASQGVEAQTLANVYLALE-ND----LEIIPVLNKIDLPAAD---PER 145 (600)
T ss_pred HHH-------HHHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CC----CCEEEEEECCCCCccc---HHH
Confidence 542 222323 3445699999999987777776555554433 22 3899999999976431 111
Q ss_pred hhCCCCCchHHHHHHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 160 YLGPECPKPLKEILQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...++.+.++.. .-++..++..+ .|+.+|++.|...++..
T Consensus 146 --------v~~ei~~~lg~~~~~vi~iSAktG----~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 146 --------VKQEIEDVIGIDASDAVLVSAKTG----IGIEEVLEAIVERIPPP 186 (600)
T ss_pred --------HHHHHHHHhCCCcceEEEEecCCC----CCHHHHHHHHHHhCccc
Confidence 112222222221 11233333332 78999999998887654
No 222
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.59 E-value=1.8e-14 Score=116.81 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=74.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcc-----------------------------cccCCCCCcceeeEEEEEEeeCCcEE
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAF-----------------------------KSKAGSSGVTKTCEMQRTMLKDGQVV 71 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~-----------------------------~~~~~~~~~T~~~~~~~~~~~~~~~~ 71 (259)
+|+++|.+++|||||+.+|+..... .......+.|.+.....+. ..+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence 5899999999999999998632110 0001123566666666555 577899
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
.+|||||..+ +...+......+|++|+|+|++.+ ...+....+..... ++ .+|++||+
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG---VKQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC---CCeEEEEE
Confidence 9999999532 122222334567999999999852 23334444443332 33 14899999
Q ss_pred eCCCCCC
Q 024985 145 TGGNELE 151 (259)
Q Consensus 145 nk~D~~~ 151 (259)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999874
No 223
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.59 E-value=3.9e-14 Score=124.86 Aligned_cols=169 Identities=14% Similarity=0.203 Sum_probs=97.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEe--------------e------C-----Cc
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTML--------------K------D-----GQ 69 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~--------------~------~-----~~ 69 (259)
.++..+|+++|..++|||||+.+|.+..... ......+.|....+....+ . + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 4566899999999999999999997642100 1111233443332211110 0 0 25
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
.+.||||||.. .+...+......+|++++|+|++.+. ...+...+..+.. .+. +|+++|+||+|
T Consensus 86 ~i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~D 150 (411)
T PRK04000 86 RVSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKID 150 (411)
T ss_pred EEEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeec
Confidence 79999999942 22233333344679999999998665 5666666665543 332 37899999999
Q ss_pred CCCCCcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 149 ELEDNDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+.+. ........ .++.++... ...+.++..++..+ .++.+|++.|...++.
T Consensus 151 l~~~--~~~~~~~~-----~i~~~l~~~~~~~~~ii~vSA~~g----~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 151 LVSK--ERALENYE-----QIKEFVKGTVAENAPIIPVSALHK----VNIDALIEAIEEEIPT 202 (411)
T ss_pred cccc--hhHHHHHH-----HHHHHhccccCCCCeEEEEECCCC----cCHHHHHHHHHHhCCC
Confidence 8754 22211111 122222221 11122333333333 6899999999887653
No 224
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.59 E-value=3.4e-14 Score=127.23 Aligned_cols=128 Identities=12% Similarity=0.149 Sum_probs=85.7
Q ss_pred CCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------C-----------------CCCCccee
Q 024985 9 DSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------A-----------------GSSGVTKT 57 (259)
Q Consensus 9 ~~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------~-----------------~~~~~T~~ 57 (259)
.|...+.+....+|+++|++++|||||+++|+........ . ...+.|.+
T Consensus 17 ~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid 96 (474)
T PRK05124 17 AYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITID 96 (474)
T ss_pred HHHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeE
Confidence 3445556677899999999999999999999755321110 0 01244555
Q ss_pred eEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccccc
Q 024985 58 CEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF 137 (259)
Q Consensus 58 ~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (259)
.....+. .++..+.||||||.. .+...+......+|++++|+|+..++..++.+.+..+.. ++.
T Consensus 97 ~~~~~~~-~~~~~i~~iDTPGh~-----------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~--- 160 (474)
T PRK05124 97 VAYRYFS-TEKRKFIIADTPGHE-----------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI--- 160 (474)
T ss_pred eeEEEec-cCCcEEEEEECCCcH-----------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---
Confidence 5544444 456789999999942 222222233467799999999987777666555554443 442
Q ss_pred CeEEEEEeCCCCCCC
Q 024985 138 DYMIVVFTGGNELED 152 (259)
Q Consensus 138 ~~~ivV~nk~D~~~~ 152 (259)
++++||+||+|+.+.
T Consensus 161 ~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 161 KHLVVAVNKMDLVDY 175 (474)
T ss_pred CceEEEEEeeccccc
Confidence 378999999998754
No 225
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=4e-14 Score=124.81 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEE--------------e-----------eCCcEE
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTM--------------L-----------KDGQVV 71 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~--------------~-----------~~~~~~ 71 (259)
+..+|+++|..++|||||+++|.+...... .....+.|....+.... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 568999999999999999999986532100 00011222222211000 0 014579
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
.+|||||.. .+...+......+|++++|+|++.+. ..+..+.+..+.. ++. +|+++|+||+|+.
T Consensus 83 ~liDtPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHH-----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence 999999942 22233333344679999999998665 5555566665533 332 3789999999987
Q ss_pred CCCcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 151 EDNDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.. ....+... .+..++... ...+.++..++..+ .++.+|++.+...++
T Consensus 148 ~~--~~~~~~~~-----~i~~~l~~~~~~~~~ii~vSA~~g----~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYE-----EIKEFVKGTVAENAPIIPVSALHN----ANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHH-----HHHhhhhhcccCCCeEEEEECCCC----CChHHHHHHHHHhCC
Confidence 54 22211111 122222221 11223344443333 689999999988665
No 226
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.58 E-value=4.6e-14 Score=108.65 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.+|+++|.+|||||||++.++...... ...+.+. .. ...+. .++ ..+.+|||+|.... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~~~~--~~-~~~i~-~~~~~~~l~i~D~~g~~~~---------~----- 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-LESPEGG--RF-KKEVL-VDGQSHLLLIRDEGGAPDA---------Q----- 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcc--ce-EEEEE-ECCEEEEEEEEECCCCCch---------h-----
Confidence 379999999999999999887654321 1111111 11 11122 344 46889999996420 1
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
.+..+|++++|+|.+++-+... ..+++.+..... ....|+++|.||.|+.......+. ....+.+.+..
T Consensus 62 --~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~-------~~~~~~~~~~~ 131 (158)
T cd04103 62 --FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVID-------DARARQLCADM 131 (158)
T ss_pred --HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccC-------HHHHHHHHHHh
Confidence 1245799999999996655554 455555554322 123499999999997432111111 11223344332
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+ .+.+|..++..+ .++.+++..+.+
T Consensus 132 ~-~~~~~e~SAk~~----~~i~~~f~~~~~ 156 (158)
T cd04103 132 K-RCSYYETCATYG----LNVERVFQEAAQ 156 (158)
T ss_pred C-CCcEEEEecCCC----CCHHHHHHHHHh
Confidence 2 234555565544 789999987754
No 227
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.58 E-value=4.9e-14 Score=128.93 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc-cccc-------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA-FKSK-------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD 85 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 85 (259)
++|+++|..++|||||+++|+.... +... ....+.|.......+. +.+..+.||||||..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~D---- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHAD---- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHH----
Confidence 5899999999999999999985321 1110 0123556655555555 5678999999999643
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+...+..+...+|++++|+|+..+...+...++..+.. .+. |++||+||+|+...
T Consensus 77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~-~~i----p~IVviNKiD~~~a 131 (594)
T TIGR01394 77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE-LGL----KPIVVINKIDRPSA 131 (594)
T ss_pred -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH-CCC----CEEEEEECCCCCCc
Confidence 22222334456699999999987777888778777765 343 88999999998643
No 228
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=125.37 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=95.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985 12 PTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK 91 (259)
Q Consensus 12 ~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~ 91 (259)
+++...+.++++|+|.||+|||||+|.++...+ .+.+.+.|+..-+.+...+....|.+|||||+.+.......+.
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I- 236 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII- 236 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH-
Confidence 567788899999999999999999999997774 4455666666666665556667999999999987543222111
Q ss_pred HHHHHHhhcCCCccEEEEEEeCC--CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVR--NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
++......+.-. -+|||++|++ .+.+..+ ..+++.++.+|.. +|+|+|+||+|.+.+
T Consensus 237 EmqsITALAHLr-aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 237 EMQIITALAHLR-SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRP 296 (620)
T ss_pred HHHHHHHHHHhh-hhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCc
Confidence 111111111111 4789999997 4566544 6788888888874 699999999999876
No 229
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=4.2e-14 Score=132.30 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=86.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHh---CCCcccccC-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSIL---GRRAFKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~---~~~~~~~~~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG 78 (259)
.....++|+++|++++|||||+|+|+ |........ ...+.|.+.....+. ..+..+++|||||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG 84 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPG 84 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCC
Confidence 34567899999999999999999997 321110000 123556655555555 4678999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+.+ ...++.. +...+|++++|+|+..+...++..++..+.. .+. |+++++||+|+...
T Consensus 85 ~~~-------f~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~-~~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 85 HVD-------FTIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADK-YKV----PRIAFVNKMDRTGA 142 (693)
T ss_pred cHH-------HHHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHH-cCC----CEEEEEECCCCCCC
Confidence 643 1223333 3345599999999988899999888888776 343 88999999998854
No 230
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.9e-13 Score=104.01 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccc-----cCCCCC---cceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKS-----KAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVS 90 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~-----~~~~~~---~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~ 90 (259)
..+|+++|+.|+||||++.++........ ..+..+ +|.-..+.......+..+.++||||..
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---------- 79 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---------- 79 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH----------
Confidence 47999999999999999999987764222 222233 444455555554555789999999943
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
++.-++....+++..+++++|.+...+.....+++.+..... .|++|.+||.|+.+. ...+.++
T Consensus 80 -RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a-----------~ppe~i~ 143 (187)
T COG2229 80 -RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA-----------LPPEKIR 143 (187)
T ss_pred -HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC-----------CCHHHHH
Confidence 455555556678899999999986666666777777766432 399999999999865 2233455
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
+.+..+.....++...+... .+..+.+..+.
T Consensus 144 e~l~~~~~~~~vi~~~a~e~----~~~~~~L~~ll 174 (187)
T COG2229 144 EALKLELLSVPVIEIDATEG----EGARDQLDVLL 174 (187)
T ss_pred HHHHhccCCCceeeeecccc----hhHHHHHHHHH
Confidence 55655532334444444332 45666555543
No 231
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.58 E-value=3.6e-14 Score=125.05 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc--------------cC-----------------CCCCcceeeEEEEEEeeCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKS--------------KA-----------------GSSGVTKTCEMQRTMLKDG 68 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~~-----------------~~~~~T~~~~~~~~~~~~~ 68 (259)
++|+++|+.++|||||+++|+....... +. ...+.|.+.....+. .++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence 4799999999999999999974431110 00 012455555555554 466
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
..+.||||||.. .+...+......+|++|+|+|+..++..++.+.+..+.. ++. ++++||+||+|
T Consensus 80 ~~~~liDtPGh~-----------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHE-----------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 799999999943 232223334557799999999987887777766665554 342 37899999999
Q ss_pred CCCC
Q 024985 149 ELED 152 (259)
Q Consensus 149 ~~~~ 152 (259)
....
T Consensus 145 ~~~~ 148 (406)
T TIGR02034 145 LVDY 148 (406)
T ss_pred cccc
Confidence 8754
No 232
>PRK10218 GTP-binding protein; Provisional
Probab=99.57 E-value=7e-14 Score=127.83 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=82.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc-cccc-------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSK-------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~ 83 (259)
..++|+++|..++|||||+++|+.... +... ....+.|.......+. .++..+.+|||||..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhH
Confidence 457999999999999999999986321 1111 1123455555544444 467899999999976431
Q ss_pred CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..+..++..+|++|+|+|+..+....+...+..+.. .+. |.+||+||+|....
T Consensus 83 -----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~gi----p~IVviNKiD~~~a 135 (607)
T PRK10218 83 -----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YGL----KPIVVINKVDRPGA 135 (607)
T ss_pred -----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cCC----CEEEEEECcCCCCC
Confidence 122233456799999999987777777777776655 343 88999999997643
No 233
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.57 E-value=3e-14 Score=132.28 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=81.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccc--------------cC-----------------CCCCcceeeEEEEE
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKS--------------KA-----------------GSSGVTKTCEMQRT 63 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~~-----------------~~~~~T~~~~~~~~ 63 (259)
...+..+|+++|++++|||||+|+|+....... +. ...+.|.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999986542111 00 01234444444444
Q ss_pred EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985 64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV 143 (259)
Q Consensus 64 ~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV 143 (259)
. .++..+.||||||.. .+...+......+|++++|+|+..++..++.+.+..+.. ++. ++++||
T Consensus 100 ~-~~~~~~~liDtPG~~-----------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~---~~iivv 163 (632)
T PRK05506 100 A-TPKRKFIVADTPGHE-----------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASL-LGI---RHVVLA 163 (632)
T ss_pred c-cCCceEEEEECCChH-----------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCC---CeEEEE
Confidence 4 466789999999943 222222234557799999999987777766666665544 342 388999
Q ss_pred EeCCCCCCC
Q 024985 144 FTGGNELED 152 (259)
Q Consensus 144 ~nk~D~~~~ 152 (259)
+||+|+.+.
T Consensus 164 vNK~D~~~~ 172 (632)
T PRK05506 164 VNKMDLVDY 172 (632)
T ss_pred EEecccccc
Confidence 999998753
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=7.2e-14 Score=130.86 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=85.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc---CC-------------CCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK---AG-------------SSGVTKTCEMQRTMLKDGQVVNVIDTPG 78 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~~-------------~~~~T~~~~~~~~~~~~~~~~~liDTPG 78 (259)
.....++|+++|++|+|||||+|+|+........ .. ..+.|.......+. .++..+.+|||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG 84 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPG 84 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCC
Confidence 3456789999999999999999999743211100 00 13556556555555 4678999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+.+.. ..... +...+|++++|+|+..+....+..++..+.. .+ .|+++|+||+|+...
T Consensus 85 ~~~~~-------~~~~~----~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFT-------VEVER----SLRVLDGAVAVLDAVGGVQPQSETVWRQANR-YE----VPRIAFVNKMDKTGA 142 (689)
T ss_pred Ccchh-------HHHHH----HHHHhCEEEEEEeCCCCCChhHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence 86531 12222 3345599999999987888887777776655 33 399999999998754
No 235
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.56 E-value=3.9e-13 Score=100.04 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=102.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|..||||||+++.+.+... ....+|...++.... .++..+.+||.-|- ..+..+.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq-----------~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLE-YKGYTLNIWDVGGQ-----------KTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEE-ecceEEEEEEcCCc-----------chhHHHH
Confidence 368999999999999999999998883 234456666666555 67889999999993 2556666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
..++...|++|+|+|..++...++ ....|.+.+... +..|++|+.||.|.... -+.+++.. .-.+..+.+.
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~---~~~L~~l~ks 150 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISK---ALDLEELAKS 150 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHH---hhCHHHhccc
Confidence 677788899999999875443333 233333333211 23599999999998744 23333221 1245666666
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+..+.+ ..++..+ +++.+-++++..
T Consensus 151 ~~~~l~--~cs~~tg----e~l~~gidWL~~ 175 (185)
T KOG0073|consen 151 HHWRLV--KCSAVTG----EDLLEGIDWLCD 175 (185)
T ss_pred cCceEE--EEecccc----ccHHHHHHHHHH
Confidence 665544 4444333 344444444433
No 236
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.55 E-value=9.2e-14 Score=101.55 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.+.+++|.+|+|||||+-.+.....-.+-..+.|. +..+..+.. .....+.||||+| .+.+.....
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv--DfkirTv~i~G~~VkLqIwDtAG-----------qErFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV--DFKIRTVDINGDRVKLQIWDTAG-----------QERFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeee--eEEEEEeecCCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 46788999999999999888765431110111122 222222332 2224799999999 346666667
Q ss_pred hcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.++++.|++++|+|+++.-+.. -.+||+.+.+.+. ..|-++|.||.|..+. ..+. ....+......+
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~R--rvV~-------t~dAr~~A~~mg 143 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPER--RVVD-------TEDARAFALQMG 143 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccc--eeee-------hHHHHHHHHhcC
Confidence 7889999999999999654443 3678888877554 2488999999997754 1111 223334443333
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+-.|..+++.. .+++..+..|.+.+.+
T Consensus 144 --ie~FETSaKe~----~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 144 --IELFETSAKEN----ENVEAMFHCITKQVLQ 170 (198)
T ss_pred --chheehhhhhc----ccchHHHHHHHHHHHH
Confidence 44677776554 6788877777665543
No 237
>PLN00023 GTP-binding protein; Provisional
Probab=99.54 E-value=1.1e-13 Score=116.26 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe------------eCCcEEEEEeCCCCCCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML------------KDGQVVNVIDTPGLFDSSAD 85 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~------------~~~~~~~liDTPG~~~~~~~ 85 (259)
...+|+++|..|||||||++.+++.........+.+.+.......+.. .....+.||||+|-.
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE----- 94 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE----- 94 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh-----
Confidence 458999999999999999999998764222112222222222111110 012468999999943
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc----------cccCeEEEEEeCCCCCCC
Q 024985 86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK----------KVFDYMIVVFTGGNELED 152 (259)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ivV~nk~D~~~~ 152 (259)
.+..+....+.+++++|+|+|++++-+... ..+++.+....+. ....|++||.||+|+...
T Consensus 95 ------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 ------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 333444556788999999999985544433 3455555553210 012489999999998643
No 238
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.9e-13 Score=118.22 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=121.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
.++.|-++|....|||||+.+|-+..+... ...|.|+.+..+.+....|..++|.||||.- .|..+-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aMR 218 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAMR 218 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHHH
Confidence 578999999999999999999999988443 4578999999998887889999999999942 555665
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH-HhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL-EDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 176 (259)
...+.-.|++++|+.++++..+++.+.+...+. ...|++|.+||+|..+.+++.. ++++.+ --..+.+
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~pekv~~eL~~~------gi~~E~~ 287 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGANPEKVKRELLSQ------GIVVEDL 287 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCHHHHHHHHHHc------CccHHHc
Confidence 666777899999999999999998888877665 2349999999999876543222 222221 1125667
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
|+.+-.+.-++..+ .++..|.+.+.-
T Consensus 288 GGdVQvipiSAl~g----~nl~~L~eaill 313 (683)
T KOG1145|consen 288 GGDVQVIPISALTG----ENLDLLEEAILL 313 (683)
T ss_pred CCceeEEEeecccC----CChHHHHHHHHH
Confidence 77666666665544 788888776543
No 239
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.53 E-value=8.1e-14 Score=112.67 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccC--------------CCCCcceeeEEEEEEee---------CCcEEEEEeC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKA--------------GSSGVTKTCEMQRTMLK---------DGQVVNVIDT 76 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------~~~~~~liDT 76 (259)
++|+++|..++|||||+.+|+......... ...+.|.........+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 479999999999999999997543211100 01122322221111211 1457999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
||..+. ......+...+|++++|+|+..+.+..+...+..... .+ .|+++|+||+|+.
T Consensus 81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~-~~----~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK-ER----VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCCcc
Confidence 997642 2222334456699999999998888887777776554 23 3899999999986
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.53 E-value=1.4e-13 Score=122.30 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=90.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcc--c---------------------------ccCCCCCcceeeEEEEEEee
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAF--K---------------------------SKAGSSGVTKTCEMQRTMLK 66 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~--~---------------------------~~~~~~~~T~~~~~~~~~~~ 66 (259)
.++..+|+++|..++|||||+.+|+..... . ......+.|.+.....+. .
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~ 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-T 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-c
Confidence 356689999999999999999988642100 0 000123566666655555 5
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHhHHHHHHHHHHHhcccccCe
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-------SEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
++..+.||||||.. .+...+......+|++++|+|+..+. ..+..+.+..+.. +|. ++
T Consensus 83 ~~~~i~lIDtPGh~-----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~ 147 (446)
T PTZ00141 83 PKYYFTIIDAPGHR-----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQ 147 (446)
T ss_pred CCeEEEEEECCChH-----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---Ce
Confidence 67799999999943 33333444456779999999998664 3566667776555 453 25
Q ss_pred EEEEEeCCCCC--CCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 140 MIVVFTGGNEL--EDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 140 ~ivV~nk~D~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
++|++||+|.. +.+...+++... .++.++...+.
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~-----~i~~~l~~~g~ 183 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKK-----EVSAYLKKVGY 183 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHH-----HHHHHHHhcCC
Confidence 78999999943 222233343332 45566665543
No 241
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.53 E-value=2.9e-13 Score=115.82 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=101.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------CCCCC---cceeeEE---EEEEeeCC----cEE
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------AGSSG---VTKTCEM---QRTMLKDG----QVV 71 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~---~T~~~~~---~~~~~~~~----~~~ 71 (259)
..+...|+++|+.++|||||||++.+.-+.+.- .+..| +|+++.+ ..+..... .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 356789999999999999999999998322211 12345 6777776 33333333 589
Q ss_pred EEEeCCCCCCCCCChHHHHHH--------------HHH-----HHhhcCCCccEEEEEE-eCC------CCCCHhHHHHH
Q 024985 72 NVIDTPGLFDSSADSEFVSKE--------------IVK-----CIGMAKDGIHAVLLVF-SVR------NRFSEEGGAAI 125 (259)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~il~v~-d~~------~~~~~~~~~~l 125 (259)
++|||+|+.+...-...-... |.. ..+.....+++.|+|. |.+ ..+...+.+++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998543221100000 000 1111223668888888 774 35667778888
Q ss_pred HHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHH
Q 024985 126 HSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLV 204 (259)
Q Consensus 126 ~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i 204 (259)
+.|++. ++ |+++|+|+.|-..+ .+ ....+.+.+.++..+..++...-. ...+..+|+.+
T Consensus 174 ~eLk~~-~k----PfiivlN~~dp~~~--et---------~~l~~~l~eky~vpvl~v~c~~l~----~~DI~~il~~v 232 (492)
T TIGR02836 174 EELKEL-NK----PFIILLNSTHPYHP--ET---------EALRQELEEKYDVPVLAMDVESMR----ESDILSVLEEV 232 (492)
T ss_pred HHHHhc-CC----CEEEEEECcCCCCc--hh---------HHHHHHHHHHhCCceEEEEHHHcC----HHHHHHHHHHH
Confidence 888873 43 99999999995433 11 112234445555554555543221 24555555543
No 242
>PRK12739 elongation factor G; Reviewed
Probab=99.53 E-value=1.9e-13 Score=127.95 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=85.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc---C-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK---A-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
...++|+++|+.++|||||+|+|+........ . ...+.|.......+. .++..+++|||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHH
Confidence 45689999999999999999999743210000 0 123566666555555 478899999999964
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+ ...+ +..+...+|++|+|+|+..+....+..++..+.. .+. |+++++||+|+...
T Consensus 85 ~-------f~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~-~~~----p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 D-------FTIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK-YGV----PRIVFVNKMDRIGA 140 (691)
T ss_pred H-------HHHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECCCCCCC
Confidence 3 1222 3334445699999999988888888888887765 343 89999999998854
No 243
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.5e-13 Score=98.44 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=100.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..+++++|.+.+|||||+.+.++....+.-+++.|...+... +... ....+.+|||.|.. .+....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKT--vyr~~kRiklQiwDTagqE-----------ryrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT--VYRSDKRIKLQIWDTAGQE-----------RYRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeE--eeecccEEEEEEEecccch-----------hhhHHH
Confidence 579999999999999999999988753333333333333331 1111 12378999999943 334444
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+++++++|+++|+++.-+... ..+...++-.. .-+.|+|+|.||||+-.+ ..+ ..+.-+.++.++
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~e--Rvi-------s~e~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSE--RVI-------SHERGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCccc--eee-------eHHHHHHHHHHh
Confidence 557889999999999985433322 23333333321 123499999999997654 111 123455677777
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
|.. +|..+++.. -++..+++.+...+-
T Consensus 157 Gfe--fFEtSaK~N----inVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 157 GFE--FFETSAKEN----INVKQVFERLVDIIC 183 (193)
T ss_pred ChH--Hhhhccccc----ccHHHHHHHHHHHHH
Confidence 754 566665544 567777776655554
No 244
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.51 E-value=3.7e-14 Score=100.79 Aligned_cols=142 Identities=21% Similarity=0.291 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|+.|+|||||.++|-|.+..... |+-+.+ ++. -.|||||.+.. ...+.+.+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQAve~------~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQAVEF------NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------cceeec------cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 58999999999999999999998853322 222221 111 26999997743 2245555555
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
....+|++++|..++++-+... ..|-....+|+|-|+||.|+.++ ..++ ..+..+...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~--------p~f~~~~~k~vIgvVTK~DLaed--~dI~---------~~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFP--------PGFLDIGVKKVIGVVTKADLAED--ADIS---------LVKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCC--------cccccccccceEEEEecccccch--HhHH---------HHHHHHHHcCCc
Confidence 6678899999998874432211 11222233489999999999865 3332 344555566643
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
.+|..+..++ +++++|++.+..
T Consensus 122 -~IF~~s~~d~----~gv~~l~~~L~~ 143 (148)
T COG4917 122 -PIFETSAVDN----QGVEELVDYLAS 143 (148)
T ss_pred -ceEEEeccCc----ccHHHHHHHHHh
Confidence 3444444333 789999888765
No 245
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.7e-13 Score=112.94 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..-+++|+|.|++|||||+|.|+|...-. .+.+.+|..+..... .++|..+.++|+||+.....+...-.+++..
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~sev--a~y~FTTl~~VPG~l-~Y~ga~IQild~Pgii~gas~g~grG~~vls-- 136 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEV--ADYPFTTLEPVPGML-EYKGAQIQLLDLPGIIEGASSGRGRGRQVLS-- 136 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccc--cccCceecccccceE-eecCceEEEEcCcccccCcccCCCCcceeee--
Confidence 34689999999999999999999988522 223444444444433 4789999999999998765543332333333
Q ss_pred hhcCCCccEEEEEEeCC
Q 024985 98 GMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~ 114 (259)
..+.||++++|+|+.
T Consensus 137 --v~R~ADlIiiVld~~ 151 (365)
T COG1163 137 --VARNADLIIIVLDVF 151 (365)
T ss_pred --eeccCCEEEEEEecC
Confidence 456779999999987
No 246
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.51 E-value=1.3e-13 Score=111.42 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------CCCCCcceeeEEEEEEe----eCCcEEEEEeCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------AGSSGVTKTCEMQRTML----KDGQVVNVIDTPG 78 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------~~~~~~T~~~~~~~~~~----~~~~~~~liDTPG 78 (259)
++|+++|.+|+|||||+++|+........ ....+.|.........+ .....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 36999999999999999999865422110 00112222222222211 1235799999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
..+. .... ......+|++++|+|+....+..+..++..+.. .+ .|+++|+||+|+.
T Consensus 81 ~~~f-------~~~~----~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF-------MDEV----AAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-EG----LPIVLVINKIDRL 136 (213)
T ss_pred Ccch-------HHHH----HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccC
Confidence 7642 1122 223346699999999986666655555554432 12 4999999999986
No 247
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.50 E-value=4.5e-13 Score=121.08 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=78.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------------CCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------------SSGVTKTCEMQRTMLKDGQVVNVIDT 76 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------------~~~~T~~~~~~~~~~~~~~~~~liDT 76 (259)
...++|+++|.+|+|||||+++|+.......... ..+.|.......+. .++..+++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-~~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-YRDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-ECCEEEEEEEC
Confidence 4568999999999999999999963111000000 01222223333344 46788999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
||..+. ....... +..+|++|+|+|+..+.......+++.... .+ .|+++++||+|....
T Consensus 87 PG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDF-------SEDTYRT----LTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RD----TPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhh-------HHHHHHH----HHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCccccc
Confidence 997542 1222222 345699999999987777776666665544 33 399999999997654
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.50 E-value=1.7e-12 Score=110.27 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=57.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--------------------e---CCcEEEEEeCCC
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--------------------K---DGQVVNVIDTPG 78 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--------------------~---~~~~~~liDTPG 78 (259)
|+++|.+|||||||+|+|++.... . ...+.+|..+....... . ...++.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~-~-~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVE-I-ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 579999999999999999988742 1 22344554444332221 1 224799999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
+.........+...+...+ +.+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 9654333333444554443 4559999999986
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.50 E-value=2.2e-13 Score=110.25 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+|+|+.||||||..+.+++...+.. ....+.|..+....+.......+.+||+||....... .+.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~------~~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN------YFNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT------THTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc------cccccHHHH
Confidence 699999999999999999998765332 3345677777766665455679999999998753211 000011123
Q ss_pred CCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-C
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE-N 178 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 178 (259)
...++++|||+|+...--..+. .+...+...........+.|.+.|+|++.+ +...+.... ..+.+...+...+ .
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~--~~r~~~~~~-~~~~i~~~~~~~~~~ 150 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE--DEREEIFRD-IQQRIRDELEDLGIE 150 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H--HHHHHHHHH-HHHHHHHHHHHTT-T
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH--HHHHHHHHH-HHHHHHHHhhhcccc
Confidence 4577999999999833233333 333334443333334589999999999865 333333321 2223444444433 2
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
.+.+|.++..+ +.+-+....|.
T Consensus 151 ~~~~~~TSI~D-----~Sly~A~S~Iv 172 (232)
T PF04670_consen 151 DITFFLTSIWD-----ESLYEAWSKIV 172 (232)
T ss_dssp SEEEEEE-TTS-----THHHHHHHHHH
T ss_pred ceEEEeccCcC-----cHHHHHHHHHH
Confidence 46677777665 34555554443
No 250
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.49 E-value=3.7e-12 Score=103.09 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|..|||||||++++.+........ +...................+.+|||+|. ..+......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----------~~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----------EEYRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCH-----------HHHHHHHHH
Confidence 799999999999999999999887632211 11111222221111111346899999994 355566667
Q ss_pred cCCCccEEEEEEeCCC--CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 100 AKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
++.+++++++|+|.+. +.......+...+....+. ..|+++|.||+|+...
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE 126 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence 7889999999999873 2333335555566554431 2499999999999865
No 251
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.48 E-value=2.6e-12 Score=104.45 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..++..|+++|++|+|||||+|+|++...........+ + .. +....+..+.++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i~---i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--IT---VVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--EE---EEecCCceEEEEeCCchH----------HHHHH
Confidence 45668899999999999999999987632111111111 1 11 111356789999999832 12222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCC
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELED 152 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~ 152 (259)
. ...+|++++|+|+..++...+..++..+.. .|. | +++|+||+|+...
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~-~g~----p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQV-HGF----PRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHH-cCC----CeEEEEEeccccCCc
Confidence 2 245699999999987788888777777765 342 6 4559999998854
No 252
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.48 E-value=6.5e-12 Score=109.80 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--------------------eC---CcEEEEEeC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--------------------KD---GQVVNVIDT 76 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~~~liDT 76 (259)
.+|+++|.+|||||||+|+|++..... ...+++|..+....... .+ ..++.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 579999999999999999999887522 23455555555432211 11 136889999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
||+.........+...+...+. .+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 9997654333445555555444 459999999985
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.48 E-value=7.2e-13 Score=119.82 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=77.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc--c-CC-----------------CCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS--K-AG-----------------SSGVTKTCEMQRTMLKDGQVVNVIDT 76 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--~-~~-----------------~~~~T~~~~~~~~~~~~~~~~~liDT 76 (259)
...++|+++|.+|+|||||+++|+-...... + +. ..+.|.......+. ..+..+.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence 4568999999999999999999853211100 0 00 01223333333344 46789999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
||..+. ..... .+...+|++|+|+|+..++......+++.+.. .+ .|+++++||+|+...
T Consensus 88 PG~~df-------~~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDF-------SEDTY----RTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD----TPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhH-------HHHHH----HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECccccCC
Confidence 996431 12222 23446699999999987777776666665543 23 399999999998643
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.48 E-value=7e-13 Score=124.42 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-------cC---------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-------KA---------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-------~~---------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
...++|+++|..|+|||||+++|+....... +. ...+.|.......+. ..+..+.+|||||..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcH
Confidence 3568999999999999999999974321100 00 012334444444444 467899999999965
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+. ......+...+|++++|+|++.+........+..+.. .+ .|+++|+||+|+...
T Consensus 85 df-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DF-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR-YG----IPRLIFINKMDRVGA 140 (687)
T ss_pred HH-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCCCCCC
Confidence 31 1222333456699999999987777777777766554 23 399999999998754
No 255
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.47 E-value=9.2e-13 Score=116.94 Aligned_cols=168 Identities=11% Similarity=0.163 Sum_probs=100.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-CCCCCcceeeEEEEE---------------Eee--------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-AGSSGVTKTCEMQRT---------------MLK-------------- 66 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~T~~~~~~~~---------------~~~-------------- 66 (259)
.+..+|+++|...+|||||+.+|+|.....-. .-..+.|.+..+... ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999986532211 111233322221110 000
Q ss_pred ---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEE
Q 024985 67 ---DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIV 142 (259)
Q Consensus 67 ---~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~iv 142 (259)
....+.||||||.. .+.+.+......+|++++|+|+..+ ...+..+.+..+. .++. ++++|
T Consensus 112 ~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi---~~iIV 176 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKL---KHIII 176 (460)
T ss_pred cccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCC---CcEEE
Confidence 02478999999942 3344444445577999999999854 4566555555443 3453 37899
Q ss_pred EEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 143 VFTGGNELEDNDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 143 V~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
|+||+|+.+. ..+++... .++.++..+ ...+.+|..++..+ .++..|++.|.+.++.
T Consensus 177 vlNKiDlv~~--~~~~~~~~-----ei~~~l~~~~~~~~~iipVSA~~G----~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 177 LQNKIDLVKE--AQAQDQYE-----EIRNFVKGTIADNAPIIPISAQLK----YNIDVVLEYICTQIPI 234 (460)
T ss_pred EEecccccCH--HHHHHHHH-----HHHHHHHhhccCCCeEEEeeCCCC----CCHHHHHHHHHhhCCC
Confidence 9999998754 33333222 233333321 12233444444333 7899999999876654
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.46 E-value=8.4e-14 Score=108.03 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=67.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...|+|+|++|+|||+|+..|.......+..+ . ..... .+....+..+.+||+||...-+ ..+...+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS---~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~--- 71 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS---M--ENNIAYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK--- 71 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------S--SEEEECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH---
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc---c--cCCceEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh---
Confidence 46899999999999999999987643222211 1 11111 1111245689999999976432 12222211
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCCC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK----KVFDYMIVVFTGGNELED 152 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ivV~nk~D~~~~ 152 (259)
....+.+||||+|+. .+...-.+..+.|..++-. ....|++|+.||.|+...
T Consensus 72 --~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 72 --YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp --HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred --chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 233468999999987 3333334555555554422 223499999999998864
No 257
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.43 E-value=9.6e-13 Score=97.34 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=104.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS---SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
-.++|+|+|..=+|||||+-..+....-....++ ...+++.... .....+.||||+|- +.+.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e----d~ra~L~IWDTAGQ-----------ErfH 76 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE----DCRADLHIWDTAGQ-----------ERFH 76 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc----cceeeeeeeeccch-----------Hhhh
Confidence 3589999999999999999877755432222111 1122222221 12247899999993 2444
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
..-..++++.+++|+|+|++++-+.+. +.|...|+.++|..+ -++||.||+|+-+...-+ ........
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt---------~qeAe~YA 145 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVT---------RQEAEAYA 145 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhh---------HHHHHHHH
Confidence 444667889999999999997666554 678888999999876 889999999976541111 11233445
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+..+..++- .++++. .||.||++.+-....+
T Consensus 146 esvGA~y~e--TSAk~N----~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 146 ESVGALYME--TSAKDN----VGISELFESLTAKMIE 176 (218)
T ss_pred Hhhchhhee--cccccc----cCHHHHHHHHHHHHHH
Confidence 555555443 333332 7899999877655444
No 258
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.2e-12 Score=112.84 Aligned_cols=168 Identities=21% Similarity=0.285 Sum_probs=119.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFD 81 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~ 81 (259)
++.+++.++.....|||||...|+....+... ....|.|...+...+.+.++ .-+++|||||.-|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45689999999999999999998644321111 01237777777666654332 5799999999887
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
+.. ++.+.+..+ +++|+|+|+.++...++...+-...+ ++- .+|.|+||+|+...+.+.++.
T Consensus 138 Fs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe-~~L----~iIpVlNKIDlp~adpe~V~~-- 199 (650)
T KOG0462|consen 138 FSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFE-AGL----AIIPVLNKIDLPSADPERVEN-- 199 (650)
T ss_pred ccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH-cCC----eEEEeeeccCCCCCCHHHHHH--
Confidence 654 555555555 99999999999999888665554433 232 889999999987654333332
Q ss_pred CCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCC
Q 024985 162 GPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQ 214 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~ 214 (259)
.+.+++..++..+...+++.. .++.++|+.|.+.++-..+.
T Consensus 200 ------q~~~lF~~~~~~~i~vSAK~G------~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 200 ------QLFELFDIPPAEVIYVSAKTG------LNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred ------HHHHHhcCCccceEEEEeccC------ccHHHHHHHHHhhCCCCCCC
Confidence 456677777777666666543 67999999999998766544
No 259
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.40 E-value=1e-11 Score=92.39 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+++++|.+-+|||+|+..++......-...+.++................+.+|||+|- +.+.+..
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsit 75 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSIT 75 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHH
Confidence 45789999999999999999999777532221122222211111111112237899999993 3566666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
+.+++..-++++|+|.+++-+.+. ..|++...-..+.+...-+.+|.+|+|+.....-+ .+....+...|
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt---------~EEaEklAa~h 146 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT---------AEEAEKLAASH 146 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc---------HHHHHHHHHhc
Confidence 667777789999999997776665 34444444333423222456889999988541111 22455677777
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
+-. ++..+++++ .+++|.+..+.+-
T Consensus 147 gM~--FVETSak~g----~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 147 GMA--FVETSAKNG----CNVEEAFDMLAQE 171 (213)
T ss_pred Cce--EEEecccCC----CcHHHHHHHHHHH
Confidence 754 445555444 5677777766553
No 260
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.39 E-value=8.1e-12 Score=111.12 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc-----------------------------ccCCCCCcceeeEEEEEEee
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK-----------------------------SKAGSSGVTKTCEMQRTMLK 66 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~ 66 (259)
..+..+|+++|..++|||||+-+|+-..... ......+.|.+.....+. .
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~ 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-T 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-C
Confidence 4567899999999999999998876211000 001123566666555554 4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CC------HhHHHHHHHHHHHhcccccCe
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FS------EEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~ 139 (259)
++..+.++||||.. .+...+......+|++|+|+|++.+ +. .+..+.+..+.. +|. .+
T Consensus 83 ~~~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~ 147 (447)
T PLN00043 83 TKYYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQ 147 (447)
T ss_pred CCEEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---Cc
Confidence 67799999999943 4444445556688999999999854 22 344444444333 443 26
Q ss_pred EEEEEeCCCCC
Q 024985 140 MIVVFTGGNEL 150 (259)
Q Consensus 140 ~ivV~nk~D~~ 150 (259)
++|++||+|+.
T Consensus 148 iIV~vNKmD~~ 158 (447)
T PLN00043 148 MICCCNKMDAT 158 (447)
T ss_pred EEEEEEcccCC
Confidence 78899999976
No 261
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.38 E-value=2.8e-12 Score=106.46 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=62.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc----------------EEEEEeCCCCCCCCCC
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFDSSAD 85 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~----------------~~~liDTPG~~~~~~~ 85 (259)
|+++|.||||||||+|+|++... .....+++|..+....+...+.+ .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 57999999999999999999886 22334666766666554432221 4999999999976554
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
...+...+...+. .+|++++|+|+.
T Consensus 79 ~~glg~~fL~~i~----~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIR----EVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHH----hCCEEEEEEeCc
Confidence 5556666655544 559999999863
No 262
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.7e-11 Score=104.48 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC---------------------Cc--cc------ccCCCCCcceeeEEEEEEee
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGR---------------------RA--FK------SKAGSSGVTKTCEMQRTMLK 66 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~---------------------~~--~~------~~~~~~~~T~~~~~~~~~~~ 66 (259)
.++..+++++|...+|||||+-.|+=. .- |. ......|.|.+.....++ .
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe-t 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE-T 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee-c
Confidence 456789999999999999999777511 10 00 000122666666666555 4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCe
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
+...+.|+|+||.. .+..-+...+..+|+.+||+|+..+ ...++++-+- |...+|. ..
T Consensus 83 ~k~~~tIiDaPGHr-----------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi---~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHR-----------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGI---KQ 147 (428)
T ss_pred CCceEEEeeCCchH-----------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCC---ce
Confidence 55689999999943 3344444456688999999999855 4445544443 4444663 58
Q ss_pred EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc---EEEEeCCCc
Q 024985 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR---RVLFDNKTK 188 (259)
Q Consensus 140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~ 188 (259)
+||++||+|..+.+.+.+++... .+..+++.++.. +.++..++.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~-----~v~~l~k~~G~~~~~v~FIPiSg~ 194 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVS-----EVSKLLKMVGYNPKDVPFIPISGF 194 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHH-----HHHHHHHHcCCCccCCeEEecccc
Confidence 99999999999876566666544 455588888764 334444433
No 263
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.1e-11 Score=88.87 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=92.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
+.-.+++++|+.|+|||.|+..+..... ....+ +.+...-..+..+. .+...+.||||+| .+.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssHTiGveFgSrIinVG-gK~vKLQIWDTAG-----------QErFRS 73 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSHTIGVEFGSRIVNVG-GKTVKLQIWDTAG-----------QERFRS 73 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhh-cccccceeeeeecceeeeec-CcEEEEEEeeccc-----------HHHHHH
Confidence 3457899999999999999999886654 22211 22222222222111 1234789999999 346777
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+++++-+.++|+|++++-+... ..||.-.+-+-...+ -++++.||.|+-+.. .....+-.+
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~R------------~VtflEAs~ 139 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPER------------EVTFLEASR 139 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChhh------------hhhHHHHHh
Confidence 77788999999999999996655443 233333333322212 456678999976541 112333344
Q ss_pred HcCC-cEEEEeCCCcccccchhHHHHHH
Q 024985 175 LCEN-RRVLFDNKTKDAATRTEQVGKLI 201 (259)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~i~eLl 201 (259)
.|.. ...+...++.++ ++++|.+
T Consensus 140 FaqEnel~flETSa~TG----eNVEEaF 163 (214)
T KOG0086|consen 140 FAQENELMFLETSALTG----ENVEEAF 163 (214)
T ss_pred hhcccceeeeeeccccc----ccHHHHH
Confidence 4443 344555666555 5666643
No 264
>PTZ00258 GTP-binding protein; Provisional
Probab=99.37 E-value=5.3e-12 Score=109.36 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=65.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC----------------CcEEEEEeCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD----------------GQVVNVIDTPGLF 80 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~----------------~~~~~liDTPG~~ 80 (259)
....+|+++|.||||||||+|+|++... .....+++|..+....+.+.+ ...+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3456899999999999999999998875 223346677676666554322 1258999999998
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
........+...+...+. .+|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir----~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIR----AVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHH----HCCEEEEEEeCC
Confidence 655444455555555544 459999999973
No 265
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=3.6e-12 Score=121.35 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEee---------CCcEEE
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTMLK---------DGQVVN 72 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~---------~~~~~~ 72 (259)
....++|+++|..++|||||+++|+.......... ..+.|.........+. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45567999999999999999999986432111100 0122222211112221 145799
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 73 VIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 73 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
++||||+.+ +...+..+...+|++|+|+|+..++..++..+++.+.+. + .|+++++||+|+.
T Consensus 96 liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R----IRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence 999999753 223334455677999999999988998888888877653 3 3999999999987
No 266
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.35 E-value=7.5e-12 Score=107.24 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC----------------cEEEEEeCCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS 83 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~~~liDTPG~~~~~ 83 (259)
.+|+++|.||||||||+|+|++... .....+++|..+....+...+. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 5899999999999999999999884 2223456666666544442221 258999999998765
Q ss_pred CChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
.....+...+...+. .+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~----~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIR----EVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHH----hCCEEEEEEeCC
Confidence 444455555655544 559999999974
No 267
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.8e-12 Score=106.59 Aligned_cols=131 Identities=18% Similarity=0.283 Sum_probs=91.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe----eCC------------------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML----KDG------------------------ 68 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~----~~~------------------------ 68 (259)
..++-|+++|+.+.||||+||.|+..+.+.....+.++|.......... ..|
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 3578999999999999999999999997655555555554433332100 000
Q ss_pred -----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccc
Q 024985 69 -----------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKV 136 (259)
Q Consensus 69 -----------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~ 136 (259)
..+.||||||+.+...+..+-.-.+...+...+..+|.|++++|+. -.++++-.+++..|+. .+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~E- 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HE- 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Cc-
Confidence 1399999999987654433333345555555667889999999987 4566666777777653 32
Q ss_pred cCeEEEEEeCCCCCCC
Q 024985 137 FDYMIVVFTGGNELED 152 (259)
Q Consensus 137 ~~~~ivV~nk~D~~~~ 152 (259)
..+-||+||.|.++.
T Consensus 212 -dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 -DKIRVVLNKADQVDT 226 (532)
T ss_pred -ceeEEEeccccccCH
Confidence 378899999999976
No 268
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.34 E-value=4.3e-11 Score=94.99 Aligned_cols=163 Identities=17% Similarity=0.095 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|.+|+|||+|...+++...... ..+...+.......+. .....+.|+||+|.... ..+..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptied~y~k~~~v~-~~~~~l~ilDt~g~~~~-----------~~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIEDSYRKELTVD-GEVCMLEILDTAGQEEF-----------SAMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-cCCCccccceEEEEEC-CEEEEEEEEcCCCcccC-----------hHHHH
Confidence 47899999999999999999887775222 2222112222222222 22237889999994322 22222
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.+....|++++|++++++-+.++ ..+.+.|.+..+. ..-|+++|.||+|+.....-. .+.-+.+....+
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~---------~eeg~~la~~~~ 139 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVS---------EEEGKALARSWG 139 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccC---------HHHHHHHHHhcC
Confidence 34456699999999997776665 3444555343332 224999999999987531111 112334444444
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.. ++..+++.. .++.+++..+...+..
T Consensus 140 ~~--f~E~Sak~~----~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CA--FIETSAKLN----YNVDEVFYELVREIRL 166 (196)
T ss_pred Cc--EEEeeccCC----cCHHHHHHHHHHHHHh
Confidence 43 445554432 5777877776665544
No 269
>PRK13768 GTPase; Provisional
Probab=99.33 E-value=1.3e-11 Score=101.98 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=73.4
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE 149 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~ 149 (259)
.+.+|||||..+.... ......+.+.+.... ++++++|+|+....+..+.....++....-.....|+++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 6999999997543211 223334444443322 7899999999755666665444443311111123599999999999
Q ss_pred CCCCcccHHh---hhCC----------------CCCchHHHHHHHcCC--cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 150 LEDNDETLED---YLGP----------------ECPKPLKEILQLCEN--RRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 150 ~~~~~~~~~~---~~~~----------------~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
... .+.+. ++.. ..+..+-+.++..+. .++.++... ..++.+|++.|.+.+
T Consensus 175 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~------~~gl~~L~~~I~~~l 246 (253)
T PRK13768 175 LSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKT------GEGFDELYAAIQEVF 246 (253)
T ss_pred cCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCC------CcCHHHHHHHHHHHc
Confidence 866 33322 2220 000111122334442 344444432 278999999998887
Q ss_pred HHh
Q 024985 209 LEN 211 (259)
Q Consensus 209 ~~~ 211 (259)
...
T Consensus 247 ~~~ 249 (253)
T PRK13768 247 CGG 249 (253)
T ss_pred CCC
Confidence 543
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.33 E-value=5.6e-12 Score=118.53 Aligned_cols=118 Identities=14% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcc--------------cccCCCCCcceeeEEEE----EEeeCCcEEEEEeCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAF--------------KSKAGSSGVTKTCEMQR----TMLKDGQVVNVIDTPG 78 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~T~~~~~~~----~~~~~~~~~~liDTPG 78 (259)
...++|+++|+.++|||||+++|+..... .......+.|....... .. ..+..+++|||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-~~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYE-GNEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeec-CCceEEEEEeCCC
Confidence 35689999999999999999998742110 00000122333222111 22 3456899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
+.+.. ..+. .+...+|++|+|+|+..+....+..++..+.+ .+ .|.++|+||+|...
T Consensus 96 ~~~f~-------~~~~----~al~~aD~~llVvda~~g~~~~t~~~~~~~~~-~~----~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFG-------GDVT----RAMRAVDGAIVVVCAVEGVMPQTETVLRQALK-EN----VKPVLFINKVDRLI 152 (720)
T ss_pred ccccH-------HHHH----HHHHhcCEEEEEEecCCCCCccHHHHHHHHHH-cC----CCEEEEEEChhccc
Confidence 87531 1222 23456699999999987777777777666544 22 27789999999874
No 271
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.33 E-value=5.1e-12 Score=111.35 Aligned_cols=211 Identities=17% Similarity=0.196 Sum_probs=118.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
.....+|+|+|..|+||||||-+|+..+....-... +..+.. ..+ .....+..++||+.-.+ +...+.++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~---~~~~l~~E-- 76 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSD---DRLCLRKE-- 76 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Ccc-CcCcCceEEEecccccc---hhHHHHHH--
Confidence 345689999999999999999999988753322111 111111 111 24556789999985221 11222333
Q ss_pred HHHhhcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
.+.+|++++|...++. +......||-.+++.+|.....|+|+|.||+|.......+.+. .+-.+
T Consensus 77 ------irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~--------~~~pi 142 (625)
T KOG1707|consen 77 ------IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV--------NTLPI 142 (625)
T ss_pred ------HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH--------HHHHH
Confidence 3455999999987732 3334467888899988888888999999999988652221222 11222
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh--HHHHHHHHHHHHhhhh-ccHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG--ATKLCDQQVEVDSLKG-YSKREI 249 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ 249 (259)
+..... ++.+...++....++.|++....+.+...-+..|..+- ++.+.. ..-.|-+.-++..++. ..+.|+
T Consensus 143 m~~f~E----iEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~-qelkp~~v~al~RIFki~D~d~D~~Lsd~El 217 (625)
T KOG1707|consen 143 MIAFAE----IETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEE-QELKPRCVKALKRIFKISDSDNDGALSDAEL 217 (625)
T ss_pred HHHhHH----HHHHHhhhhhhhhhhHhhhhhhhheeeccCcccccccc-ccccHHHHHHHHHHHhhhccccccccchhhh
Confidence 222111 11111111233367778887777766655555553211 011100 1122334445555555 666666
Q ss_pred HHHHH
Q 024985 250 SELKE 254 (259)
Q Consensus 250 ~~~~~ 254 (259)
.++++
T Consensus 218 n~fQ~ 222 (625)
T KOG1707|consen 218 NDFQK 222 (625)
T ss_pred hHHHH
Confidence 66654
No 272
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.30 E-value=1.8e-11 Score=116.85 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEee---------------
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTMLK--------------- 66 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~--------------- 66 (259)
....++|+++|+.++|||||+++|+.......... ..+.|.........+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 44678999999999999999999975442111100 0122222222222221
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
.+..+++|||||..+ +...+..+...+|+.|+|+|+..++...+..+++.+.. .+ .|+++++||
T Consensus 96 ~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~-~~----~p~i~~iNK 159 (843)
T PLN00116 96 NEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ER----IRPVLTVNK 159 (843)
T ss_pred CceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH-CC----CCEEEEEEC
Confidence 245789999999643 22223334456699999999998998888888887655 23 399999999
Q ss_pred CCCC
Q 024985 147 GNEL 150 (259)
Q Consensus 147 ~D~~ 150 (259)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9987
No 273
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.3e-11 Score=92.74 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+.+|+++|--||||||+++.|--.+...+ .+|.......+. +.+..+.+||.-|-.. +...
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~-ykn~~f~vWDvGGq~k-----------~R~l 77 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVE-YKNISFTVWDVGGQEK-----------LRPL 77 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEE-EcceEEEEEecCCCcc-----------cccc
Confidence 4568999999999999999999876665332 234444444444 5688999999999542 2233
Q ss_pred HhhcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
...++...+++|||+|.+++ +...-.++...+...- -...|+++..||.|.... .+..++-. .-.+-+
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~~a--ls~~ei~~------~L~l~~ 147 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLPGA--LSAAEITN------KLGLHS 147 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhcccc--CCHHHHHh------Hhhhhc
Confidence 34456677999999999843 3332223333332211 124599999999998755 33332221 111122
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
-++...++..+++..+ .|+.|-++.+.+.+..
T Consensus 148 l~~~~w~iq~~~a~~G----~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 148 LRSRNWHIQSTCAISG----EGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCCCCcEEeecccccc----ccHHHHHHHHHHHHhc
Confidence 2233444555555555 7899988888877653
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=1.5e-10 Score=93.64 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
..+..|+++|-.|+|||||+..|..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHH
Confidence 4567899999999999999988853
No 275
>PRK12740 elongation factor G; Reviewed
Probab=99.27 E-value=5.6e-11 Score=111.44 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=73.5
Q ss_pred EcCCCCcHHHHHHHHhCCCccccc---C-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 024985 25 VGRTGNGKSATGNSILGRRAFKSK---A-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF 88 (259)
Q Consensus 25 ~G~~g~GKSslin~l~~~~~~~~~---~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~ 88 (259)
+|++|+|||||+++|+........ . ...+.|.......+. ..+..+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVD------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHH-------
Confidence 599999999999999544321110 0 012344444444444 4678999999999643
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 89 VSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+...... +...+|++++|+|++.+....+..++..+.. .+ .|+++|+||+|....
T Consensus 73 ~~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~-~~----~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 FTGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEK-YG----VPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence 1122222 2345699999999987777777666666554 23 399999999998754
No 276
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.7e-10 Score=103.55 Aligned_cols=118 Identities=21% Similarity=0.310 Sum_probs=81.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceee----------------------------------------
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC---------------------------------------- 58 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~---------------------------------------- 58 (259)
.-+|+++|++++||||++|+++...+.+.+..+. +.|
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~---TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHT---TNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCccccccc---ceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 3589999999999999999999887766553221 111
Q ss_pred ----EEEEEEeeCC------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHH
Q 024985 59 ----EMQRTMLKDG------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL 128 (259)
Q Consensus 59 ----~~~~~~~~~~------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l 128 (259)
....+.+.++ ..++++|.||+.-+. +...++-.....+|++|||+.+.+.++..++.++...
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~v 257 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKV 257 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHh
Confidence 1111222333 259999999988542 2233333334577999999999988888888888776
Q ss_pred HHHhcccccCeEEEEEeCCCCCCC
Q 024985 129 ESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 129 ~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.+. ..+++|+.||||...+
T Consensus 258 s~~-----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 258 SEE-----KPNIFILNNKWDASAS 276 (749)
T ss_pred hcc-----CCcEEEEechhhhhcc
Confidence 653 2388899999998755
No 277
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=9.8e-11 Score=100.58 Aligned_cols=158 Identities=18% Similarity=0.282 Sum_probs=114.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.|+.+|....|||||+.+++|... ........+.|.+..++... ..+..+.|||+||+. .+.+.+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~-~~d~~~~fIDvpgh~-----------~~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK-LEDGVMGFIDVPGHP-----------DFISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc-CCCCceEEeeCCCcH-----------HHHHHHHh
Confidence 478899999999999999998763 11223456889999888776 455589999999964 44444555
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN- 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (259)
....+|..++|+++++++..++.+.+..|.- +|. ++.+||+||+|..++ ..+++. +++++.....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d~--~r~e~~--------i~~Il~~l~l~ 135 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVDE--ARIEQK--------IKQILADLSLA 135 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEeccccccH--HHHHHH--------HHHHHhhcccc
Confidence 6668899999999988999998888877665 664 477999999999876 434433 3344443331
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
...+|..++..+ +||++|...|.++.
T Consensus 136 ~~~i~~~s~~~g----~GI~~Lk~~l~~L~ 161 (447)
T COG3276 136 NAKIFKTSAKTG----RGIEELKNELIDLL 161 (447)
T ss_pred cccccccccccC----CCHHHHHHHHHHhh
Confidence 111344444433 89999999999888
No 278
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.2e-10 Score=107.64 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=87.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc---CC-------------CCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSK---AG-------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~~-------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
....++|.++|+..+|||||.-+|+-.....+. +. ..+.|.........|..+..+++|||||.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 346689999999999999999888633221111 00 12555555555555322489999999998
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
-|+. .++.+.+..+ |+.++|+|+..+...+...+++...+ .+. |.++++||+|.+..
T Consensus 87 VDFt-------~EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~-~~v----p~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFT-------IEVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADK-YGV----PRILFVNKMDRLGA 143 (697)
T ss_pred cccH-------HHHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhh-cCC----CeEEEEECcccccc
Confidence 8753 3555555444 99999999998999998888888876 343 99999999999865
No 279
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.26 E-value=4.2e-11 Score=87.64 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=95.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
...+.++|--++|||||.|.+...... .....|.....+.+. ..+..+.+||.||-. .+..+..
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~t-kgnvtiklwD~gGq~-----------rfrsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVT-KGNVTIKLWDLGGQP-----------RFRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEec-cCceEEEEEecCCCc-----------cHHHHHH
Confidence 457899999999999999999764431 123345555555544 456789999999954 3444555
Q ss_pred hcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 99 MAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.+.+++++++||+|+.++ ++..-.+ |..++.++ ...|++|+.||.|..+. -.-. ++++
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~E----L~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~------------~li~ 145 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSE----LHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI------------ALIE 145 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHH----HHHHhcchhhcCCcEEEecccccCccc--ccHH------------HHHH
Confidence 667889999999998732 3322222 33333333 22499999999997754 2222 2233
Q ss_pred HcC------CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 175 LCE------NRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 175 ~~~------~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..+ ..++-|+.+.+.. .+++-+++++.+.-
T Consensus 146 rmgL~sitdREvcC~siScke~----~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 146 RMGLSSITDREVCCFSISCKEK----VNIDITLDWLIEHS 181 (186)
T ss_pred HhCccccccceEEEEEEEEcCC----ccHHHHHHHHHHHh
Confidence 222 2355555554433 67888888776543
No 280
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.25 E-value=5.3e-11 Score=96.40 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=85.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC---hHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFVSKE 92 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~---~~~~~~~ 92 (259)
...+.+++.|.+|+|||||+|.++.......... .++.|+....+. -+..++++|.||++.+... .+.+..-
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhHh
Confidence 3458999999999999999999987764333333 556666666553 3578999999996533221 1222222
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
...++ ......-.+++++|++.++.+-|...+.++.+ .+. |+.+|+||||....
T Consensus 210 t~~Y~-leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-~~V----P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 TKSYL-LERENLVRVFLLVDASVPIQPTDNPEIAWLGE-NNV----PMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHH-HhhhhhheeeeeeeccCCCCCCChHHHHHHhh-cCC----CeEEeeehhhhhhh
Confidence 22222 22223345677788887888888888888877 343 99999999998743
No 281
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.21 E-value=7.8e-10 Score=89.82 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=63.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC-CcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGR-RAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~-~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
..+...|+++|++++|||+|+|.|+|. ..+.......++|+.+-....... .+..+.++||||+.+...........
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345678999999999999999999998 356655555667776555543322 35789999999998765533011111
Q ss_pred HHHHHhhcCCCccEEEEEEeCC
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~ 114 (259)
+.. +.. .-++++||.++.+
T Consensus 84 ~~~-l~~--llss~~i~n~~~~ 102 (224)
T cd01851 84 LFA-LAT--LLSSVLIYNSWET 102 (224)
T ss_pred HHH-HHH--HHhCEEEEeccCc
Confidence 111 111 1237888888875
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.21 E-value=8.8e-11 Score=110.77 Aligned_cols=119 Identities=14% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEe---eCCcEEEEEeCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTML---KDGQVVNVIDTPGL 79 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~---~~~~~~~liDTPG~ 79 (259)
...++|+++|+.++|||||+.+|+.......... ..+.|.........+ ..+..++||||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4567999999999999999999974332111000 012222222222221 13567999999998
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
.+. ...+.. +...+|++|+|+|+..+....+..++..... .+. |.++++||+|...
T Consensus 98 ~df-------~~~~~~----~l~~~D~avlVvda~~g~~~~t~~~~~~~~~-~~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDF-------GGDVTR----AMRAVDGAIVVVDAVEGVMPQTETVLRQALR-ERV----KPVLFINKVDRLI 153 (731)
T ss_pred cCh-------HHHHHH----HHHhcCEEEEEEECCCCCCccHHHHHHHHHH-cCC----CeEEEEECchhhc
Confidence 753 223333 3345699999999987888888888876544 332 7799999999763
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.20 E-value=2.7e-09 Score=90.99 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=59.7
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHH-HHHHhcccccCeEEEEEeC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHS-LESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ivV~nk 146 (259)
+..++||||+|...+.. .+ ...+|.+++|++.. +..+...++. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~~-------~i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSET-------AV-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccchh-------HH-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 45799999999884321 11 12359999997633 2223222221 2221 34799999
Q ss_pred CCCCCCCcccHHhhhCCCCCchHHHHHHHcC-------CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 147 GNELEDNDETLEDYLGPECPKPLKEILQLCE-------NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+|+... ........ .++..+.... .+++.+++.. ..|+.+|++.|.++++.
T Consensus 204 aDl~~~--~~a~~~~~-----el~~~L~l~~~~~~~w~~pVi~vSA~~------g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 204 ADGDNK--TAARRAAA-----EYRSALRLLRPKDPGWQPPVLTCSALE------GEGIDEIWQAIEDHRAA 261 (332)
T ss_pred hcccch--hHHHHHHH-----HHHHHHhcccccccCCCCCEEEEECCC------CCCHHHHHHHHHHHHHH
Confidence 998865 22221111 2233333211 2344455443 27999999999998874
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.20 E-value=2.1e-10 Score=98.93 Aligned_cols=178 Identities=16% Similarity=0.232 Sum_probs=110.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccC-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~ 83 (259)
+-++|+++.....|||||+..|+.+.. |.... ...|.|.-.+-..+. +++..++|+||||.-|+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCcc
Confidence 457999999999999999999986542 11110 012455444444444 578899999999988765
Q ss_pred CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC
Q 024985 84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP 163 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~ 163 (259)
. ++.+.++ -+|.+++++|+..+.-++.+-.++...+ .|- +.|||+||+|.....++.+-+-.-.
T Consensus 83 G-------EVERvl~----MVDgvlLlVDA~EGpMPQTrFVlkKAl~-~gL----~PIVVvNKiDrp~Arp~~Vvd~vfD 146 (603)
T COG1217 83 G-------EVERVLS----MVDGVLLLVDASEGPMPQTRFVLKKALA-LGL----KPIVVINKIDRPDARPDEVVDEVFD 146 (603)
T ss_pred c-------hhhhhhh----hcceEEEEEEcccCCCCchhhhHHHHHH-cCC----CcEEEEeCCCCCCCCHHHHHHHHHH
Confidence 4 3333333 3499999999998888888877775544 232 6678999999876533222111000
Q ss_pred CCCchHHHHHHHcCCcEEEEeCCCc----ccccchhHHHHHHHHHHHHHHHhCC
Q 024985 164 ECPKPLKEILQLCENRRVLFDNKTK----DAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
.-..+..--+++..++.+-+.... +.......+.-|++.|.+.++...+
T Consensus 147 -Lf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 147 -LFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred -HHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 000011112344555555443321 2223446788999999999887654
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.19 E-value=6.4e-10 Score=106.74 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=76.0
Q ss_pred cHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc-----------------EEEEEeCCCCCCCCCChHHHHHHH
Q 024985 31 GKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ-----------------VVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 31 GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
+||||+.+|.+..+.. ....+.|+....+.+...... .+.||||||.. .+
T Consensus 473 ~KTtLLD~iR~t~v~~--~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe-----------~F 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAK--KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE-----------AF 539 (1049)
T ss_pred ccccHHHHHhCCCccc--ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH-----------HH
Confidence 3999999999999833 345788888887766532111 38999999943 22
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
..........+|++++|+|+++++...+...+..+.. .+ .|+++|+||+|+..
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~-~~----iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ-YK----TPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH-cC----CCEEEEEECCCCcc
Confidence 2223334567899999999998888888888887765 33 39999999999864
No 286
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.19 E-value=5.5e-11 Score=91.34 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
...+|+++|.||+|||||+|+|.+......+. .+++|+...... .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence 35689999999999999999999987644433 345565544332 2345899999995
No 287
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=95.56 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=86.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
.+.+.|++||.+|+||||||++|++...++.. .-..|-++.......+.|..+.+.||-||...- +..+...|...
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~AT 251 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQAT 251 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHH
Confidence 34589999999999999999999977765443 234455555555555788899999999987532 23334444444
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc---ccCeEEEEEeCCCCCC
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK---VFDYMIVVFTGGNELE 151 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~---~~~~~ivV~nk~D~~~ 151 (259)
+.. ...+|++|.|+|++++.-+.. ...+..+.. +|.+ ....++=|=||+|..+
T Consensus 252 Lee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 252 LEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhcccccccc
Confidence 332 235699999999996655443 556666666 4542 1224666778888554
No 288
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=8.2e-11 Score=87.25 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEee--CC----cEEEEEeCCCCCCCCCChHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLK--DG----QVVNVIDTPGLFDSSADSEFVSK 91 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~--~~----~~~~liDTPG~~~~~~~~~~~~~ 91 (259)
.+.+.+|.+|+||||++-..+....-..-.++.+....... +...-. .| ..+.+|||+|- +
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ-----------E 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ-----------E 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH-----------H
Confidence 45677899999999999887765531111111111111111 111000 11 26889999993 3
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
.+.+.....++.+-++|+++|+++.-+... ..|+..|+-.-- ....-+++..||+|+... ..+ ......
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PDivlcGNK~DL~~~--R~V-------s~~qa~ 148 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPDIVLCGNKADLEDQ--RVV-------SEDQAA 148 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCCEEEEcCccchhhh--hhh-------hHHHHH
Confidence 455554555667788999999985444332 445555543211 112358889999997754 111 133566
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
++..+.+.++ |..++..+.+..+.++-|++.+-+-+
T Consensus 149 ~La~kyglPY--fETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 149 ALADKYGLPY--FETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred HHHHHhCCCe--eeeccccCcCHHHHHHHHHHHHHHHH
Confidence 7788877665 45555455445555666655554443
No 289
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.15 E-value=1.7e-08 Score=88.62 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=72.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCC----------cc-eeeEEEEEEe---------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSG----------VT-KTCEMQRTML--------------- 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~----------~T-~~~~~~~~~~--------------- 65 (259)
.+..|+++|.+||||||++..|. |..+......+.. .. ....++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999886 4433222211100 00 0111111100
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
..+..++||||||... ....+..++...... ..+|.++||+|++.+.. .....+.+.+..+ +.-+|+
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~Gq~--a~~~a~~F~~~~~-----~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIGQA--AEAQAKAFKDSVD-----VGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccChh--HHHHHHHHHhccC-----CcEEEE
Confidence 0245899999999653 234455566555432 35688999999874322 2334455544333 777999
Q ss_pred eCCCCCCC
Q 024985 145 TGGNELED 152 (259)
Q Consensus 145 nk~D~~~~ 152 (259)
||.|....
T Consensus 247 TKlD~~ar 254 (429)
T TIGR01425 247 TKLDGHAK 254 (429)
T ss_pred ECccCCCC
Confidence 99998643
No 290
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.4e-10 Score=87.65 Aligned_cols=119 Identities=12% Similarity=0.183 Sum_probs=73.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
...|+++|.++||||+|+-.|.-...... ..+.......+ . .++..+.+||.||... +...+...++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T---vtSiepn~a~~--r-~gs~~~~LVD~PGH~r-------lR~kl~e~~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGT---VTSIEPNEATY--R-LGSENVTLVDLPGHSR-------LRRKLLEYLK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCe---eeeeccceeeE--e-ecCcceEEEeCCCcHH-------HHHHHHHHcc
Confidence 37899999999999999988875532111 11111112222 1 3445689999999542 2333333333
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK----KVFDYMIVVFTGGNELED 152 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ivV~nk~D~~~~ 152 (259)
.. ..+-+++||+|.. -+...-....+.|...+-. ....|++|..||.|+...
T Consensus 105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 22 3678999999987 4555445555555444322 223489999999999865
No 291
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.12 E-value=1.5e-10 Score=90.04 Aligned_cols=56 Identities=34% Similarity=0.439 Sum_probs=43.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
..+|+++|.+|+|||||+|+|++.....++. .+++|+....... +..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEe----CCCEEEEECcCC
Confidence 4799999999999999999999988755543 4566665554422 346899999995
No 292
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=9.7e-10 Score=89.78 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=113.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCc---------cc-----ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRA---------FK-----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~---------~~-----~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
+.+..+|..+|..+.|||||..+|+..-. +. +.....+.|.......+. ..++.+..+|+||.-|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-t~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-cCCceEEeccCCChHH
Confidence 45678999999999999999999864211 00 011123556555544444 4678999999999432
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
+.+.+ ...+.+.|..|+|+.++++..++.++-+-..++ .|. ..+++++||+|+.++ .++-+..
T Consensus 88 -------YvKNM----ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq-vGv---p~ivvflnK~Dmvdd--~ellelV 150 (394)
T COG0050 88 -------YVKNM----ITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGV---PYIVVFLNKVDMVDD--EELLELV 150 (394)
T ss_pred -------HHHHH----hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh-cCC---cEEEEEEecccccCc--HHHHHHH
Confidence 22222 223345689999999988888887665544444 554 267888999999986 5665555
Q ss_pred CCCCCchHHHHHHHcCCc----EEEEeCCC---cccccchhHHHHHHHHHHHHHHHhCC
Q 024985 162 GPECPKPLKEILQLCENR----RVLFDNKT---KDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~----~~~~~~~~---~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
.- ..++++..++.. ++...+.. .........|.||++.+.++++...+
T Consensus 151 em----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per 205 (394)
T COG0050 151 EM----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER 205 (394)
T ss_pred HH----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence 43 677888877642 22222211 11223456789999999998876543
No 293
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=5.2e-09 Score=76.22 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.++-+++|.-|+|||.|+..++.......-..+.++.....+..+. .....+.+|||.|. +.+.....
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievs-gqkiklqiwdtagq-----------erfravtr 78 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQ-----------ERFRAVTR 78 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-CcEEEEEEeecccH-----------HHHHHHHH
Confidence 4678899999999999999998776533222222222222222111 22247899999993 35555556
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.+++++-..+.|.|++.+.+-.. ..||.-.+++..+ ..-++++.||.|+-....-..+ ..++..+.
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~ye---------eak~faee-- 145 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYE---------EAKEFAEE-- 145 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHH---------HHHHHHhh--
Confidence 67888899999999995554443 2333333332222 2257788999997644211112 23344443
Q ss_pred CcEEEEeCCCcccccchhHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKL 200 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eL 200 (259)
+...++..+++.+ +++++.
T Consensus 146 ngl~fle~saktg----~nveda 164 (215)
T KOG0097|consen 146 NGLMFLEASAKTG----QNVEDA 164 (215)
T ss_pred cCeEEEEeccccc----CcHHHH
Confidence 3355666666665 455553
No 294
>PTZ00099 rab6; Provisional
Probab=99.10 E-value=2.5e-09 Score=83.72 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=70.0
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
..+.||||||.. .+.......+.++|++|+|+|++++-+... ..++..+....+. ..|+++|+||+
T Consensus 29 v~l~iwDt~G~e-----------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQE-----------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChH-----------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECc
Confidence 478999999953 233333445678999999999985433332 2455544443332 34899999999
Q ss_pred CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
|+.....-.. ..........+. .+|..++..+ .++.++++.|.+.+++
T Consensus 96 DL~~~~~v~~---------~e~~~~~~~~~~--~~~e~SAk~g----~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTY---------EEGMQKAQEYNT--MFHETSAKAG----HNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCH---------HHHHHHHHHcCC--EEEEEECCCC----CCHHHHHHHHHHHHHh
Confidence 9864310111 112233333333 3455555443 7899999999888866
No 295
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.09 E-value=2.7e-09 Score=89.32 Aligned_cols=142 Identities=14% Similarity=0.176 Sum_probs=97.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc---------cC----------------------CCCCcceeeEEEEEE
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS---------KA----------------------GSSGVTKTCEMQRTM 64 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~---------~~----------------------~~~~~T~~~~~~~~~ 64 (259)
+...++.+-+|...-||||||-.|+-...... .. ...|.|.++.+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 34568999999999999999988864321100 00 011677777766554
Q ss_pred eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
...+.|++.||||. +++.+-+.....-+|+.|+++|+..++..+.++ -..+..++|. +++++.+
T Consensus 83 -T~KRkFIiADTPGH-----------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGI---rhvvvAV 146 (431)
T COG2895 83 -TEKRKFIIADTPGH-----------EQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGI---RHVVVAV 146 (431)
T ss_pred -cccceEEEecCCcH-----------HHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCC---cEEEEEE
Confidence 46689999999993 244444444455679999999998777666543 4456666775 5899999
Q ss_pred eCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 145 TGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
||+|+.+-+++.++++.. ....+.+.++.
T Consensus 147 NKmDLvdy~e~~F~~I~~-----dy~~fa~~L~~ 175 (431)
T COG2895 147 NKMDLVDYSEEVFEAIVA-----DYLAFAAQLGL 175 (431)
T ss_pred eeecccccCHHHHHHHHH-----HHHHHHHHcCC
Confidence 999999876555555443 45556666654
No 296
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.08 E-value=4.4e-10 Score=81.85 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985 13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
.|.+....+|+++|--++|||||+..|.+.++.... .|.......+.....-.+++||..|-. .
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-----pT~GFn~k~v~~~g~f~LnvwDiGGqr-----------~ 74 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-----PTNGFNTKKVEYDGTFHLNVWDIGGQR-----------G 74 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-----ccCCcceEEEeecCcEEEEEEecCCcc-----------c
Confidence 356678899999999999999999999988863322 222222233332233589999999843 4
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY 160 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~ 160 (259)
+....+.++..+|.+|||+|.++. +.+...++.+.+.+.-- ...|+.|-.||-|++.. ...++.
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdllta--a~~eei 140 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTA--AKVEEI 140 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhh--cchHHH
Confidence 555556678888999999997633 22222344444433211 23489999999999866 444443
No 297
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=6.3e-10 Score=100.55 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=83.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-----------------eCCcEEEEEeCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-----------------KDGQVVNVIDTPGLF 80 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-----------------~~~~~~~liDTPG~~ 80 (259)
..+.+.++|...+|||-|+..|.+..+.... ..+.|+.+....+.. ..-..+.+|||||..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqege--aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE--AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccc--ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 3578999999999999999999988874333 345555444332210 111258999999954
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
. |...-.....-+|.+|+|+|+.+++.++..+.++.|+..- .|+||.+||+|.+-
T Consensus 552 s-----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk-----tpFivALNKiDRLY 606 (1064)
T KOG1144|consen 552 S-----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK-----TPFIVALNKIDRLY 606 (1064)
T ss_pred h-----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC-----CCeEEeehhhhhhc
Confidence 2 2222233344569999999999999999999999887642 39999999999984
No 298
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.08 E-value=3.1e-10 Score=85.54 Aligned_cols=62 Identities=27% Similarity=0.409 Sum_probs=43.4
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
|+.....+++++|.+|+|||||+|+|++...... ....+.|+....... + ..+.+|||||+.
T Consensus 78 Sa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~---~-~~~~i~DtpG~~ 139 (141)
T cd01857 78 SALKENATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFL---T-PTITLCDCPGLV 139 (141)
T ss_pred EecCCCcEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEe---C-CCEEEEECCCcC
Confidence 3334445899999999999999999999876432 223455555443322 2 368999999975
No 299
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.3e-09 Score=87.79 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC---ccccc--CCCCCcceeeEEEEEEe--------eCCcEEEEEeCCCCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR---AFKSK--AGSSGVTKTCEMQRTML--------KDGQVVNVIDTPGLFDSSAD 85 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~---~~~~~--~~~~~~T~~~~~~~~~~--------~~~~~~~liDTPG~~~~~~~ 85 (259)
..++.++|...+|||||..+|..-. .|... ....+.|-+..+..... .....+.+||+||.-
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 3899999999999999999985322 12211 11234444443333221 122368999999942
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985 86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPEC 165 (259)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~ 165 (259)
.+.+.+.-...-.|..++|+|+..+...+.-+.|-. -+.+- +..+||+||+|.+.+. .....+. ..
T Consensus 82 ------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~~c----~klvvvinkid~lpE~--qr~ski~-k~ 147 (522)
T KOG0461|consen 82 ------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-GELLC----KKLVVVINKIDVLPEN--QRASKIE-KS 147 (522)
T ss_pred ------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhh-hhhhc----cceEEEEeccccccch--hhhhHHH-HH
Confidence 222332223334589999999985655554333321 22222 3889999999988652 2222221 11
Q ss_pred CchHHHHHHHcC--CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 166 PKPLKEILQLCE--NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 166 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+.+++-++..+ +......-++.++....+.+.||.+.+.+.+-+.
T Consensus 148 ~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 148 AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 224444555443 2222333334444455688999999988876443
No 300
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=1.3e-09 Score=94.33 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee----CCcEEEEEeCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL 79 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~----~~~~~~liDTPG~ 79 (259)
...++..++.....|||||...|+........ ....|.|.+.+.....+. ....+++|||||.
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 45678899999999999999988643210000 112367766665555432 2247999999998
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~ 159 (259)
-|+.- ++.+++..| .+.|+|+|++++...+.....=.. +..+ --++.|+||+|+...+++....
T Consensus 87 VDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~YlA---le~~--LeIiPViNKIDLP~Adpervk~ 150 (603)
T COG0481 87 VDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANVYLA---LENN--LEIIPVLNKIDLPAADPERVKQ 150 (603)
T ss_pred cceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHHHHH---HHcC--cEEEEeeecccCCCCCHHHHHH
Confidence 77543 555665555 788999999988877763222111 1211 2789999999987653222211
Q ss_pred hhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCC
Q 024985 160 YLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQ 214 (259)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~ 214 (259)
.+..++.--....+..++++ ..|++++|+.|.+.++...+.
T Consensus 151 --------eIe~~iGid~~dav~~SAKt------G~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 151 --------EIEDIIGIDASDAVLVSAKT------GIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred --------HHHHHhCCCcchheeEeccc------CCCHHHHHHHHHhhCCCCCCC
Confidence 22233322222333444433 278999999999988876554
No 301
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=6.1e-09 Score=75.86 Aligned_cols=158 Identities=12% Similarity=0.137 Sum_probs=94.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+.+|-.++||||++..|.-... .. .. .|....+..+. +.+..+++||..|-. .+....
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~---~~-~i-pTvGFnvetVt-ykN~kfNvwdvGGqd-----------~iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS---VT-TI-PTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC---cc-cc-cccceeEEEEE-eeeeEEeeeeccCch-----------hhhHHH
Confidence 467999999999999999999864332 11 11 23333333333 567899999999932 555666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCC-CcccHHhhhCCCCCchHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELED-NDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~-~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
..++.+..++|||+|..++ ...+ +.-..|....+.+ ...+++|..||-|+... .++++.+++. ++
T Consensus 79 rhYy~gtqglIFV~Dsa~~-dr~e-eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le----------Le 146 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADR-DRIE-EARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE----------LE 146 (180)
T ss_pred HhhccCCceEEEEEeccch-hhHH-HHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc----------cc
Confidence 6678889999999998644 2221 1222333333332 12378888999998754 1134444433 11
Q ss_pred HcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 175 LCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
... .++++-.+++-+. .++.|=+.++...+
T Consensus 147 ~~r~~~W~vqp~~a~~g----dgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 RIRDRNWYVQPSCALSG----DGLKEGLSWLSNNL 177 (180)
T ss_pred cccCCccEeeccccccc----hhHHHHHHHHHhhc
Confidence 223 3455555555444 56766666665543
No 302
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.05 E-value=1.4e-10 Score=88.33 Aligned_cols=61 Identities=30% Similarity=0.336 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-C-----CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKA-G-----SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-~-----~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~ 83 (259)
..+++|+|+||||||||+|+|++...+.++. + ...+|+....+.. .....+|||||+.+..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFG 101 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccc
Confidence 3789999999999999999999985433321 1 1224444444432 1245799999987543
No 303
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=3.1e-10 Score=89.95 Aligned_cols=57 Identities=28% Similarity=0.316 Sum_probs=40.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccc-------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFK-------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~-------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
..+++++|.+|+|||||+|+|++..... .....+++|+....... +..+.+|||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 4689999999999999999999865422 11223456665554432 225799999996
No 304
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=2.1e-10 Score=86.76 Aligned_cols=118 Identities=21% Similarity=0.118 Sum_probs=75.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCCCcceeeEEEEEE-eeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKA-GSSGVTKTCEMQRTM-LKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-~~~~~T~~~~~~~~~-~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
.-.+++++|..++||||+|.+.+..-. ..+. .+.++.. ....+. ...+..+.+|||.|-. ++..
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif-TkdykktIgvdf--lerqi~v~~Edvr~mlWdtagqe-----------EfDa 84 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDYKKTIGVDF--LERQIKVLIEDVRSMLWDTAGQE-----------EFDA 84 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc-ccccccccchhh--hhHHHHhhHHHHHHHHHHhccch-----------hHHH
Confidence 357999999999999999999984432 1111 1111111 000011 1223467789999943 4444
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..+.+++++.+.++|+.-+++.+.+. .+|-+.+..-.+ .-|.++|-||+|++++
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~---~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE---RIPTVFVQNKIDLVED 139 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc---cCCeEEeeccchhhHh
Confidence 44567889999999999887766553 344444444333 2499999999999976
No 305
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.03 E-value=6.5e-10 Score=85.20 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
...+|+++|.+|+|||||+|+|++......+. .+++|+...... .+..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVK----LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEE----ecCCEEEEECCCC
Confidence 46889999999999999999999987544332 245565555432 2356899999995
No 306
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.02 E-value=1.4e-09 Score=91.67 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=48.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS 86 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 86 (259)
....+|+++|.||+|||||+|+|++.....++. .+++|+...... -+..+.+|||||+..+....
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~ 183 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPKLED 183 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCc
Confidence 345789999999999999999999987644432 456676665432 23468999999998765433
No 307
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.99 E-value=1.1e-08 Score=75.73 Aligned_cols=167 Identities=14% Similarity=0.133 Sum_probs=97.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..-..+|.++|.+..|||||+-...+...-..-....|.-..-....+. .....+.+||..|- +++..
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~-----------~~~~n 84 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQ-----------REFIN 84 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCc-----------Hhhhc
Confidence 3346899999999999999998888776411111111211111111111 12347899999993 36667
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
++..+-.++-++||++|.+.+.+-. .+.+|.++..|.....--++|.||.|..-.-+.++.+-+. ...+...+.
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLn--Si~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~----~qar~YAk~ 158 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLN--SIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETIS----RQARKYAKV 158 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHH--HHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHH----HHHHHHHHH
Confidence 7777778889999999999544332 2444555544443333457899999986433233333221 234445555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
..... +|.+.... -++.++++.+..
T Consensus 159 mnAsL-~F~Sts~s-----INv~KIFK~vlA 183 (205)
T KOG1673|consen 159 MNASL-FFCSTSHS-----INVQKIFKIVLA 183 (205)
T ss_pred hCCcE-EEeecccc-----ccHHHHHHHHHH
Confidence 44444 44443322 467777776543
No 308
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.99 E-value=2.7e-09 Score=83.47 Aligned_cols=163 Identities=18% Similarity=0.066 Sum_probs=96.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..++++||..++|||+|+.+...... +.... .|..-.+...... ++. .+.+|||.|-.+- .+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~yv---PTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEEYV---PTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcC-ccccc---CeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence 47899999999999999988875543 32221 1222111111123 243 6899999995532 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPL 169 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l 169 (259)
.-..+++++|+||+|+++.++.+.. ...|+..++.... ..|+++|+||.|+..+. ..++....+ -.....
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~-~~~~~l~~~~~~~Vt~~~g 144 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDP-STLEKLQRQGLEPVTYEQG 144 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhhCH-HHHHHHHhccCCcccHHHH
Confidence 2245889999999999988555444 3566666666442 34999999999998442 233222211 112234
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
..+.+..+. ..++..++... .++.+.++...
T Consensus 145 ~~lA~~iga-~~y~EcSa~tq----~~v~~vF~~a~ 175 (198)
T KOG0393|consen 145 LELAKEIGA-VKYLECSALTQ----KGVKEVFDEAI 175 (198)
T ss_pred HHHHHHhCc-ceeeeehhhhh----CCcHHHHHHHH
Confidence 555666553 23444443322 45666666443
No 309
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=78.47 Aligned_cols=159 Identities=11% Similarity=0.115 Sum_probs=94.1
Q ss_pred EEEcCCCCcHHHHHHHHhCCCccccc-CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985 23 VLVGRTGNGKSATGNSILGRRAFKSK-AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK 101 (259)
Q Consensus 23 ~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (259)
+++|.+++|||.|+-.+-........ .++.+.........+. .....+.+|||.|. +.+.+....++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-~~kvklqiwdtagq-----------erfrsvt~ayy 68 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQ-----------ERFRSVTHAYY 68 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-CcEEEEEEeeccch-----------HHHhhhhHhhh
Confidence 37899999999987655433321110 0111111111111111 12247899999993 35666667788
Q ss_pred CCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcE
Q 024985 102 DGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180 (259)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (259)
+.+|+++++.|+.++.+... ..||..+.+.-.... .++++.||+|+..+ ..+ ....=+.+.+..+.++
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e--r~v-------~~ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE--RAV-------KRDDGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh--hcc-------ccchHHHHHHHHCCCc
Confidence 99999999999987766654 678888888433323 67899999998754 111 1223445666766654
Q ss_pred EEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 181 VLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
. ..+++++ -++.-.+-.|.+-+.+
T Consensus 138 m--etsaktg----~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 138 M--ETSAKTG----FNVDLAFLAIAEELKK 161 (192)
T ss_pred e--ecccccc----ccHhHHHHHHHHHHHH
Confidence 4 4444443 3455545555544443
No 310
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.4e-09 Score=80.81 Aligned_cols=168 Identities=13% Similarity=0.057 Sum_probs=96.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCC--CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRA-FKSKAG--SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~--~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
+....|+++|.-+||||||+-++--... .-.+.. ....|.......+. ..+.++.+||.-|-. ..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~-v~~~~l~fwdlgGQe-----------~l 82 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE-VCNAPLSFWDLGGQE-----------SL 82 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-eccceeEEEEcCChH-----------HH
Confidence 3457899999999999999987632211 001111 12234444444455 457799999998832 22
Q ss_pred HHHHhhcCCCccEEEEEEeCCCC--CCHhHHHHHHH-HHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHS-LESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~-l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
.+....++..+|+++||+|++++ +... ...++. +.+-.- ...|+++..||-|+-+. .+..++-. .+.
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~l--eg~p~L~lankqd~q~~--~~~~El~~-----~~~ 152 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKL--EGAPVLVLANKQDLQNA--MEAAELDG-----VFG 152 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHh--cCCchhhhcchhhhhhh--hhHHHHHH-----Hhh
Confidence 22233345566999999999842 3222 222322 222111 12399999999998765 33333221 111
Q ss_pred HHHHHcCCcEEEEeCC-CcccccchhHHHHHHHHHHHHHHHh
Q 024985 171 EILQLCENRRVLFDNK-TKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~-~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
. .+..+.+.+.|... +-++ +|+.|-+.++...++.+
T Consensus 153 ~-~e~~~~rd~~~~pvSal~g----egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 153 L-AELIPRRDNPFQPVSALTG----EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred h-hhhcCCccCccccchhhhc----ccHHHHHHHHHHHHhhc
Confidence 1 34445555555443 3333 77888888887777766
No 311
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.96 E-value=1.5e-08 Score=74.94 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=74.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-CCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSIL-GRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~-~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
....+|+++|--++|||+++..|+ |....... .-.|....+. .++...| ..+.|.||.|+... +.++.+.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e---~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~~eLprh 80 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE---LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---QQELPRH 80 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCc---cccchhhheeEeeecCCChhheEEEeecccccCc---hhhhhHh
Confidence 345799999999999999997765 44332221 1223222222 2232223 27999999998754 2222222
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+ ..-+|++++|++..+.-+..-.++|+.-.+.....-..|++|+.|++|+.++
T Consensus 81 y-------~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 81 Y-------FQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred H-------hccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 2 2234999999998744444444444433332333334599999999998765
No 312
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.9e-08 Score=89.22 Aligned_cols=141 Identities=21% Similarity=0.287 Sum_probs=91.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC---------------------Cccc--------ccCCCCCcceeeEEEEEEeeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR---------------------RAFK--------SKAGSSGVTKTCEMQRTMLKD 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~---------------------~~~~--------~~~~~~~~T~~~~~~~~~~~~ 67 (259)
.....++++|...+|||||+-.|+-. .-|. ......|+|-+.....++ ..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-s~ 253 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-SK 253 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-cC
Confidence 35689999999999999999887511 0000 001122566555555554 45
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHhHHHHHHHHHHHhcccccCeE
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-----F--SEEGGAAIHSLESLFGKKVFDYM 140 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~ 140 (259)
...++|+|+||..++ ..-+...+..+|+.++|+|++.+ + ..+.++....++. +|. ...
T Consensus 254 ~~~~tliDaPGhkdF-----------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi---~ql 318 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDF-----------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI---SQL 318 (603)
T ss_pred ceeEEEecCCCcccc-----------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc---ceE
Confidence 668999999996543 22223345677999999998732 1 2234555555555 563 489
Q ss_pred EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-HHcCC
Q 024985 141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEIL-QLCEN 178 (259)
Q Consensus 141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 178 (259)
+|++||+|.++.+.+.++++.. .+...+ +.|+.
T Consensus 319 ivaiNKmD~V~Wsq~RF~eIk~-----~l~~fL~~~~gf 352 (603)
T KOG0458|consen 319 IVAINKMDLVSWSQDRFEEIKN-----KLSSFLKESCGF 352 (603)
T ss_pred EEEeecccccCccHHHHHHHHH-----HHHHHHHHhcCc
Confidence 9999999999887666666544 344445 67764
No 313
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.96 E-value=4.5e-10 Score=97.56 Aligned_cols=122 Identities=19% Similarity=0.194 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc----cccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAF----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~----~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..++++|.+|||||||+|+|++.... ......+++|........ +..+.++||||+.....-...+..+-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 58999999999999999999986421 122334556655443321 2346799999997542101111111111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
.+ ......+.+.++++..+.+.......++.+.. . ...+.+.+++.+.+.
T Consensus 231 ~~-~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 231 YI-TPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNIH 280 (360)
T ss_pred hc-CCCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCceeE
Confidence 11 11235677888888765544444333443322 1 125666677766654
No 314
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=2.7e-09 Score=84.31 Aligned_cols=127 Identities=18% Similarity=0.227 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH-HHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE-IVKC 96 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~-~~~~ 96 (259)
...+|+|+|++|+||||+=-.++..... -+....|.|.++......+.++.-+.+||..|-. ...+. +...
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------~fmen~~~~q 74 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------EFMENYLSSQ 74 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhhhhheeehhccCCcH-------HHHHHHHhhc
Confidence 3578999999999999976666544322 2234566777777666665666789999999832 12222 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHH-HHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAI-HSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
-......++++++|+|+..+--..|.... +.|..++.......+++.++|+|++..
T Consensus 75 ~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 75 EDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred chhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 23445678999999999844333332222 223333444444588999999999976
No 315
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.95 E-value=3.7e-09 Score=88.70 Aligned_cols=62 Identities=26% Similarity=0.355 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
...+|+++|.||+|||||+|+|++.....++ ..+++|+....... +..+.++||||+.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~----~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKL----SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEe----CCCEEEEECCCcccCCC
Confidence 4578999999999999999999988754443 34566666554322 34689999999975543
No 316
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.95 E-value=2.6e-09 Score=83.27 Aligned_cols=58 Identities=28% Similarity=0.417 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
..++++++|.+|+|||||+|+|++...... ....++|........ + ..+.+|||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~---~-~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKI---S-PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEe---c-CCEEEEECCCCC
Confidence 347899999999999999999998775433 223455655554432 2 568899999973
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.93 E-value=5.8e-08 Score=82.43 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.....|+++|++|+|||||++.+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999999764
No 318
>PRK12288 GTPase RsgA; Reviewed
Probab=98.92 E-value=2.2e-09 Score=92.44 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~~ 82 (259)
..++|+|.||||||||||+|++.....++.-+. .+|+....+... .+ ..||||||+...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~ 270 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREF 270 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcc
Confidence 358999999999999999999987654432211 244455544332 22 259999998753
No 319
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=9.8e-09 Score=90.69 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=78.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
..++..++++|++|+||||||.+|....--..... ..+.|. .....+.+.+..+|. + ...+.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~mi 128 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQMI 128 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHHHH
Confidence 34556677999999999999999975431111111 111111 113446899999994 1 22344
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED 159 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~ 159 (259)
...+. +|++|+++|+.-++..+..++|..+... |. ..++-|+|+.|+.... .+++.
T Consensus 129 DvaKI----aDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~ 184 (1077)
T COG5192 129 DVAKI----ADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRS 184 (1077)
T ss_pred hHHHh----hheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHH
Confidence 43333 4999999999989998888999888763 32 3788999999998653 44443
No 320
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=6.1e-09 Score=84.51 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCChHH-------
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEF------- 88 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~~~------- 88 (259)
.++|+-||.+|.|||||+.+|++...-....+..-.+.......+... .+ ..+.++||.|+++.....+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 589999999999999999999987742211111111111111111111 12 27899999999975433221
Q ss_pred HHHHHHHHH----------hh-cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCccc
Q 024985 89 VSKEIVKCI----------GM-AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDET 156 (259)
Q Consensus 89 ~~~~~~~~~----------~~-~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~ 156 (259)
+-.++..++ .. -...+|+.||.+.++ +++...|.-.++.|.. ..++|.|+-|.|.+.. .+
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKaDtisK--~e 193 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKADTISK--EE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHhhhhhH--HH
Confidence 111111111 11 124679999999887 5566666555555543 2388999999998866 45
Q ss_pred HHhh
Q 024985 157 LEDY 160 (259)
Q Consensus 157 ~~~~ 160 (259)
+..|
T Consensus 194 L~~F 197 (406)
T KOG3859|consen 194 LKRF 197 (406)
T ss_pred HHHH
Confidence 5443
No 321
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=5.1e-09 Score=88.90 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC------------C-----cEEEEEeCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD------------G-----QVVNVIDTPGLFDS 82 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~------------~-----~~~~liDTPG~~~~ 82 (259)
+++.+||.||||||||+|+++.... ....++.+|.++....+...+ . .++.|+|.+|+-..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6899999999999999999998884 334466777776655432111 1 26899999999877
Q ss_pred CCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
....+.+..++...+. .+|+|+.|+++.
T Consensus 81 As~GeGLGNkFL~~IR----evdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIR----EVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence 7767777778776654 559999999864
No 322
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.88 E-value=7.3e-09 Score=85.97 Aligned_cols=60 Identities=30% Similarity=0.368 Sum_probs=40.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccC------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKA------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~ 82 (259)
....+|+|.||||||||+|+|.+.....++. ....+|+....+... .+| .||||||+...
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG---~iiDTPGf~~~ 229 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGG---WIIDTPGFRSL 229 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCC---EEEeCCCCCcc
Confidence 3578899999999999999999865333221 112345555555432 233 58999998754
No 323
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.88 E-value=2e-08 Score=79.76 Aligned_cols=94 Identities=18% Similarity=0.072 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
..+++|||||... .......++...+... .++-+++|++++.+. .+...+....+.++ +.-+|+||.|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMGQ--EDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGGG--HHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccCh--HHHHHHHHHhhccc-----CceEEEEeec
Confidence 4699999999763 2334445555544433 557889999987332 23333333444344 4457899999
Q ss_pred CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985 149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT 187 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (259)
.... --.+-.+....+-++.++.+..
T Consensus 152 et~~-------------~G~~l~~~~~~~~Pi~~it~Gq 177 (196)
T PF00448_consen 152 ETAR-------------LGALLSLAYESGLPISYITTGQ 177 (196)
T ss_dssp SSST-------------THHHHHHHHHHTSEEEEEESSS
T ss_pred CCCC-------------cccceeHHHHhCCCeEEEECCC
Confidence 8754 2233345555677777777653
No 324
>PRK12289 GTPase RsgA; Reviewed
Probab=98.87 E-value=3.4e-09 Score=91.32 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=39.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~~ 82 (259)
..++|+|+||||||||||+|++.....++..+. .+|+....+.. ..+ ..||||||+...
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g--~~liDTPG~~~~ 237 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNG--GLLADTPGFNQP 237 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCC--cEEEeCCCcccc
Confidence 358999999999999999999876544332111 14555554432 222 279999998643
No 325
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.85 E-value=1.6e-08 Score=100.04 Aligned_cols=131 Identities=15% Similarity=0.268 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccc------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC----hHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSK------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD----SEFV 89 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~----~~~~ 89 (259)
+=-+++|++|+||||+|+.- |...+... ....+.|..|.- .-...-++|||+|.+....+ ....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-----wf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-----WFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-----EecCCEEEEcCCCccccCCCcccccHHH
Confidence 34577899999999999776 44432211 111234444432 22345679999997754321 2334
Q ss_pred HHHHHHHHhhc--CCCccEEEEEEeCCCCCC--Hh--------HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH
Q 024985 90 SKEIVKCIGMA--KDGIHAVLLVFSVRNRFS--EE--------GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL 157 (259)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~il~v~d~~~~~~--~~--------~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~ 157 (259)
+..+...+... ...+++||+++|+..-+. .. -+..+..+.+.+|... |++||+||+|++.. +
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence 56666666544 357899999999872222 21 1334556666677766 99999999999954 5
Q ss_pred HhhhC
Q 024985 158 EDYLG 162 (259)
Q Consensus 158 ~~~~~ 162 (259)
.+|..
T Consensus 260 ~~~f~ 264 (1169)
T TIGR03348 260 EEFFA 264 (1169)
T ss_pred HHHHH
Confidence 55554
No 326
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.84 E-value=8.2e-09 Score=88.24 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=46.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
..+++++|.||||||||||+|.+.....++. .+|.|...+.... +..+.++||||+.....
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCc
Confidence 4789999999999999999999999744433 4566665554432 34589999999986544
No 327
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.3e-08 Score=82.78 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEE-------------------------EEeeCCcE
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQR-------------------------TMLKDGQV 70 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~-------------------------~~~~~~~~ 70 (259)
++..+|.++|....|||||..+|.|-.... +..-..+.|.+..+.. ....--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 567899999999999999999998753210 0000111221111110 00000136
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985 71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE 149 (259)
Q Consensus 71 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~ 149 (259)
+.|+|.||.. -+...+.+.+.-.|+.|+|+.++.+ ..++..+-|-.|.= .|. ++++||-||+|+
T Consensus 88 VSfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI-igi---k~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI-IGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh-hcc---ceEEEEecccce
Confidence 8999999932 2233333333345899999999833 44555555554433 342 599999999999
Q ss_pred CCCCcccHHhhhCCCCCchHHHHHHHcCC------cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 150 LEDNDETLEDYLGPECPKPLKEILQLCEN------RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
.... ..+++| +++.+...+ ++..+++ ..+-++.-|++.|.+.++....
T Consensus 153 V~~E-~AlE~y---------~qIk~FvkGt~Ae~aPIIPiSA------~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 153 VSRE-RALENY---------EQIKEFVKGTVAENAPIIPISA------QHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred ecHH-HHHHHH---------HHHHHHhcccccCCCceeeehh------hhccCHHHHHHHHHHhCCCCcc
Confidence 8641 333333 233333332 2333333 3447899999999999876533
No 328
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.84 E-value=5.5e-09 Score=83.65 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=64.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..-+|+++|.|++|||||+..|+.... ...+...+|-.|....+. +++..+.++|.||+.....+...-.+++
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~-y~ga~IQllDLPGIieGAsqgkGRGRQv---- 133 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIH-YNGANIQLLDLPGIIEGASQGKGRGRQV---- 133 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEE-ecCceEEEecCcccccccccCCCCCceE----
Confidence 347999999999999999999987664 223344455556555444 7889999999999987654433323332
Q ss_pred hhcCCCccEEEEEEeCC
Q 024985 98 GMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~ 114 (259)
...++-+|+++.|+|++
T Consensus 134 iavArtaDlilMvLDat 150 (364)
T KOG1486|consen 134 IAVARTADLILMVLDAT 150 (364)
T ss_pred EEEeecccEEEEEecCC
Confidence 23456779999999997
No 329
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.7e-08 Score=83.62 Aligned_cols=120 Identities=15% Similarity=0.236 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh--CCCcccccC------C------------CCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSIL--GRRAFKSKA------G------------SSGVTKTCEMQRTMLKDGQVVNVIDT 76 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~--~~~~~~~~~------~------------~~~~T~~~~~~~~~~~~~~~~~liDT 76 (259)
...++.+++-.|.+|||||...|+ |......+. . ..|.+.......+. +.+..++|.||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-Y~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-YADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-cCCeEEeccCC
Confidence 345789999999999999997764 222111110 0 01222333333344 67889999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN 153 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~ 153 (259)
||..|.+. ...+.+. -+|..+.|+|+-.++.+....+++..+- .+. |++-.+||+|....+
T Consensus 89 PGHeDFSE-------DTYRtLt----AvDsAvMVIDaAKGiE~qT~KLfeVcrl-R~i----PI~TFiNKlDR~~rd 149 (528)
T COG4108 89 PGHEDFSE-------DTYRTLT----AVDSAVMVIDAAKGIEPQTLKLFEVCRL-RDI----PIFTFINKLDREGRD 149 (528)
T ss_pred CCccccch-------hHHHHHH----hhheeeEEEecccCccHHHHHHHHHHhh-cCC----ceEEEeeccccccCC
Confidence 99887643 2223222 2389999999988999999888886544 444 999999999987653
No 330
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.84 E-value=2.7e-07 Score=81.54 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC--------------------------------------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS-------------------------------------------- 52 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~-------------------------------------------- 52 (259)
+.-++|++||.-++||||++..+.....|+.+.+..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 456899999999999999999998777776553311
Q ss_pred --------CcceeeEEEEEEe-eCC-cEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh
Q 024985 53 --------GVTKTCEMQRTML-KDG-QVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120 (259)
Q Consensus 53 --------~~T~~~~~~~~~~-~~~-~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~ 120 (259)
|+|.......... ..| ..++++|.||...+... .......|..+.+..-..+++||+|+.-. ....+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE 464 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE 464 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence 2232222221211 112 36999999998754321 12334455555555666789999998643 22222
Q ss_pred HHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 121 ~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
-..+-..+.. . .+..+.+|+|+||.|+.+.
T Consensus 465 RSnVTDLVsq-~-DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQ-M-DPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHh-c-CCCCCeeEEEEeecchhhh
Confidence 2223333333 2 2334589999999998854
No 331
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.83 E-value=1.6e-08 Score=86.90 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC----------------cEEEEEeCCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS 83 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~~~liDTPG~~~~~ 83 (259)
.++.++|.|++|||||+|+|++...... ..++.+|..+....+...+. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999998874122 22355556655554443221 268999999998654
Q ss_pred CChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
.....+...+...+..+ |++++|++..
T Consensus 82 s~g~Glgn~fL~~ir~~----d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREV----DIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhC----CEEEEEEeCC
Confidence 44444556666665544 9999999973
No 332
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.82 E-value=1.7e-09 Score=88.48 Aligned_cols=77 Identities=16% Similarity=0.089 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
.+.++||||-.+.-. .......+.+.+.. ...-++++++|+....++... .++-.+.-.+.- .-|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeecc
Confidence 599999999432100 00112222222222 344578999998722222221 111111111211 23999999999
Q ss_pred CCCC
Q 024985 148 NELE 151 (259)
Q Consensus 148 D~~~ 151 (259)
|+..
T Consensus 167 Dl~~ 170 (238)
T PF03029_consen 167 DLLS 170 (238)
T ss_dssp GGS-
T ss_pred Cccc
Confidence 9987
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.81 E-value=7.2e-09 Score=85.32 Aligned_cols=59 Identities=25% Similarity=0.281 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~ 83 (259)
..++++|++|||||||+|+|++.....++.- ...+|+....+.. .+ -.++||||+....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccC
Confidence 5889999999999999999998765433211 1225555555432 22 3799999987543
No 334
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.4e-08 Score=74.36 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..-+|+++|--|+||+|++-.+--.++.... .|.......+. +++.++.+||.-|-.. +....
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-----Ptigfnve~v~-yKNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-----PTIGFNVETVP-YKNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-----CCCCcCccccc-cccccceeeEccCccc-----------ccHHH
Confidence 5579999999999999987666433321111 11112222223 4677899999988543 22222
Q ss_pred hhcCCCccEEEEEEeCC--CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVR--NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
..++...|++|||+|.. ++++....++...|.+--=. ...++|+.||.|-... ....+.... -.+.++...
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq--~a~llv~anKqD~~~~--~t~~E~~~~---L~l~~Lk~r 152 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ--HAKLLVFANKQDYSGA--LTRSEVLKM---LGLQKLKDR 152 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc--CceEEEEeccccchhh--hhHHHHHHH---hChHHHhhh
Confidence 33566779999999987 34554445555555432111 1378899999997654 333332210 112222222
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+-.|.+++..+ .|+.+.++++..-+++
T Consensus 153 ---~~~Iv~tSA~kg----~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 153 ---IWQIVKTSAVKG----EGLDPAMDWLQRPLKS 180 (182)
T ss_pred ---eeEEEeeccccc----cCCcHHHHHHHHHHhc
Confidence 244566666544 8999999998877664
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.78 E-value=3.7e-07 Score=76.27 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=45.4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEE
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIV 142 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 142 (259)
.+..++||||||.... +.....++...... ....+|.+++|+|++. ...+......+.+..+ ..-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence 3468999999997642 33334444443322 1235789999999973 2333333333333233 5678
Q ss_pred EEeCCCCCCC
Q 024985 143 VFTGGNELED 152 (259)
Q Consensus 143 V~nk~D~~~~ 152 (259)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999998654
No 336
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=2.6e-08 Score=76.35 Aligned_cols=57 Identities=32% Similarity=0.425 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
...+++++|.+|+||||++|++.+....... ...+.|...... ..+..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~-~~~~~t~~~~~~----~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS-PSPGYTKGEQLV----KITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeeeeeEEE----EcCCCEEEEECcCC
Confidence 4578999999999999999999986643322 233445443322 12346899999995
No 337
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.76 E-value=1.1e-06 Score=74.89 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=77.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCC-----------cceeeEEEEEE---------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSSG-----------VTKTCEMQRTM--------------- 64 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~~-----------~T~~~~~~~~~--------------- 64 (259)
..+..|+++|++|+||||++..|.+.- +......+.. .-....+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999998875421 1111111100 00001111100
Q ss_pred -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985 65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 65 -~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
...+..++||||||..... .....++...... ....++..++|+|++.+.. .........+..+ +
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~-----~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVG-----L 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCC-----C
Confidence 0234579999999976432 2233344433321 1235688899999984322 2112222222222 6
Q ss_pred EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.-+|+||.|.... -..+-.+....+-++.++...
T Consensus 262 ~giIlTKlD~t~~-------------~G~~l~~~~~~~~Pi~~v~~G 295 (318)
T PRK10416 262 TGIILTKLDGTAK-------------GGVVFAIADELGIPIKFIGVG 295 (318)
T ss_pred CEEEEECCCCCCC-------------ccHHHHHHHHHCCCEEEEeCC
Confidence 6799999996533 112334445556666666654
No 338
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.7e-08 Score=86.15 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=77.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC---------------CCCcceeeEEEEEE--e--eCCcEEEEEeC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG---------------SSGVTKTCEMQRTM--L--KDGQVVNVIDT 76 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~---------------~~~~T~~~~~~~~~--~--~~~~~~~liDT 76 (259)
.....+|+++|.-++|||+|+..|.....+..... ..+++.+..-.... . ....-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34568999999999999999999987654221100 01222222111111 1 12236899999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
||.-+. ..+....+ ..+|++++|+|+..+..-....+++...+. ..|+++|+||+|.+
T Consensus 205 PGHVnF-------~DE~ta~l----~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNF-------SDETTASL----RLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred CCcccc-------hHHHHHHh----hhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 997643 22443333 345999999999888888877777765442 13999999999986
No 339
>PRK00098 GTPase RsgA; Reviewed
Probab=98.75 E-value=4.7e-08 Score=82.87 Aligned_cols=59 Identities=29% Similarity=0.299 Sum_probs=39.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
...++|+|++|||||||+|+|++......+.-. ..+|+........ ....++||||+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~----~~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP----GGGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC----CCcEEEECCCcCc
Confidence 457999999999999999999987654332111 1244444433221 1247999999874
No 340
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1e-07 Score=79.61 Aligned_cols=176 Identities=15% Similarity=0.201 Sum_probs=114.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc--------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGR------RAFK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~------~~~~--------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
.++..+|.-+|....|||||..+|+.. ..+. +.....+.|.......+. ...+.+.=+|+||.-|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-Ta~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-TAKRHYAHTDCPGHAD 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-ccccccccCCCCchHH
Confidence 456689999999999999999998631 1100 011123555544444444 3456888999999532
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
+.+-+.....+-|+.|+|+.++++..++.++-|-+.++ .|. ++++|.+||.|.+++ .++.+++
T Consensus 130 -----------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~d--~e~leLV 192 (449)
T KOG0460|consen 130 -----------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVDD--PEMLELV 192 (449)
T ss_pred -----------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccCC--HHHHHHH
Confidence 22222334456699999999998888888777765555 454 488899999999977 5666655
Q ss_pred CCCCCchHHHHHHHcCC---cEEEEeCCC------cccccchhHHHHHHHHHHHHHHHhCC
Q 024985 162 GPECPKPLKEILQLCEN---RRVLFDNKT------KDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~---~~~~~~~~~------~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
+- .+++++...+. ...++..++ ..+.-..+.|.+|++.+.++++...+
T Consensus 193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R 249 (449)
T KOG0460|consen 193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER 249 (449)
T ss_pred HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc
Confidence 43 67888887763 112222211 11112346789999999998765533
No 341
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.74 E-value=7.1e-08 Score=77.52 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+..+.|+|+|+.|+|||||++.++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998754
No 342
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.6e-07 Score=70.60 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..-+++++|--|+|||||++.|-..........-.+++.... ..+..+..+|.-|.. +.....
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~------Ig~m~ftt~DLGGH~-----------qArr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELS------IGGMTFTTFDLGGHL-----------QARRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhe------ecCceEEEEccccHH-----------HHHHHH
Confidence 446899999999999999999976664222111122222222 467789999999932 333334
Q ss_pred hhcCCCccEEEEEEeCCC--CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 98 GMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..+.+.+|+++|.+|+-+ ++.+. +.-++.+...- .-.+.|++|..||+|....
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~e-~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAES-KKELDALLSDE-SLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhHH-HHhcCcceeecccccCCCc
Confidence 455667799999999862 23222 22222221110 0023499999999997755
No 343
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=82.44 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=68.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-------------C---cEEEEEeCCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-------------G---QVVNVIDTPGLFD 81 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-------------~---~~~~liDTPG~~~ 81 (259)
..++|.+||.+|+|||||+|+|++.... ....+.+|.++....+...+ + -.+.+.|++|+-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 5689999999999999999999988863 34456777777666543221 1 1599999999988
Q ss_pred CCCChHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 024985 82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSV 113 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~ 113 (259)
.....+.+...+.+.+.. +|+++.|+++
T Consensus 97 GAs~G~GLGN~FLs~iR~----vDaifhVVr~ 124 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRH----VDAIFHVVRA 124 (391)
T ss_pred CcccCcCchHHHHHhhhh----ccceeEEEEe
Confidence 777777788888777654 4888888875
No 344
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.73 E-value=1.1e-07 Score=77.24 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=54.1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEGGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
|..++||.|.|.+.+ .-++ ..-+|.+++|+.+. +.+...-.-+++ + .=++|+|
T Consensus 121 G~D~IiiETVGvGQs-------E~~I-------~~~aD~~v~v~~Pg~GD~iQ~~KaGimE----i-------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQS-------EVDI-------ADMADTVVLVLVPGLGDEIQAIKAGIME----I-------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSSTH-------HHHH-------HTTSSEEEEEEESSTCCCCCTB-TTHHH----H--------SEEEEE
T ss_pred CCCEEEEeCCCCCcc-------HHHH-------HHhcCeEEEEecCCCccHHHHHhhhhhh----h-------ccEEEEe
Confidence 556999999998742 1122 12349999988765 233322222222 1 3358899
Q ss_pred CCCCCCCCcccHHhhhCCCCCchHHHHHHHc-----CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 146 GGNELEDNDETLEDYLGPECPKPLKEILQLC-----ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
|+|.... .....+ ++..+... .+++.++..++..+ +|+.+|.+.|.++...
T Consensus 176 KaD~~gA-~~~~~~---------l~~~l~l~~~~~~~W~ppV~~tsA~~~----~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 176 KADRPGA-DRTVRD---------LRSMLHLLREREDGWRPPVLKTSALEG----EGIDELWEAIDEHRDY 231 (266)
T ss_dssp --SHHHH-HHHHHH---------HHHHHHHCSTSCTSB--EEEEEBTTTT----BSHHHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHH---------HHHHHhhccccccCCCCCEEEEEeCCC----CCHHHHHHHHHHHHHH
Confidence 9994422 112221 22233221 23455665554433 7999999999886543
No 345
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.73 E-value=1.5e-07 Score=81.26 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCC---Ccc--------eeeEEEEEE----------ee---C
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSS---GVT--------KTCEMQRTM----------LK---D 67 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~---~~T--------~~~~~~~~~----------~~---~ 67 (259)
.+..|+|+|++||||||++..|...- +......+. ... ..+...... .. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34789999999999999999986321 110011000 000 000111000 00 1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..++||||||... .......++...+... .+|.++||+|++... ..-...++.+.. ++ .-=+|+||.
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk~-~d~~~i~~~F~~-~~-----idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMKS-KDMIEIITNFKD-IH-----IDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccCh-HHHHHHHHHhcC-CC-----CCEEEEEcc
Confidence 34799999999753 2233344555554432 357788999886222 111334443333 22 456899999
Q ss_pred CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985 148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188 (259)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (259)
|.... --.+-.+...++.++.++.+...
T Consensus 388 DET~k-------------~G~iLni~~~~~lPIsyit~GQ~ 415 (436)
T PRK11889 388 DETAS-------------SGELLKIPAVSSAPIVLMTDGQD 415 (436)
T ss_pred cCCCC-------------ccHHHHHHHHHCcCEEEEeCCCC
Confidence 98754 22344555666777777776543
No 346
>PRK14974 cell division protein FtsY; Provisional
Probab=98.73 E-value=1.3e-07 Score=81.01 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=43.5
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..++||||||.... ......++...... ..+|.+++|+|+..+ .........+.+..+ .--+|+||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence 456999999997642 23344455444322 246888999998632 222223333333233 566899999
Q ss_pred CCCCC
Q 024985 148 NELED 152 (259)
Q Consensus 148 D~~~~ 152 (259)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 98643
No 347
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.73 E-value=2.5e-08 Score=87.25 Aligned_cols=62 Identities=31% Similarity=0.361 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD 85 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 85 (259)
..+|.+||.|||||||+||+|.|.....+ .+++|.|+..+...+ ...+.+.|+||+-.+...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccCCC
Confidence 58999999999999999999999987333 346788887776533 246789999999765543
No 348
>PRK13796 GTPase YqeH; Provisional
Probab=98.72 E-value=2.1e-08 Score=87.25 Aligned_cols=59 Identities=25% Similarity=0.239 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC----cccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR----AFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~----~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
..+++++|.+|||||||||+|++.. ........+++|........ +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l----~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL----DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc----CCCcEEEECCCccc
Confidence 3579999999999999999998643 11112234566665544322 12357999999863
No 349
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.70 E-value=2.1e-07 Score=80.22 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=81.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-cceeeEEEE----------------------------EEeeCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG-VTKTCEMQR----------------------------TMLKDG 68 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~-~T~~~~~~~----------------------------~~~~~~ 68 (259)
++..|+||||+||||||.+-.|........+....+ .|++.-..+ +....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 378999999999999999988865543222211111 111111100 001234
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
..++||||.|.... +.....++...+..+ .. .-+.+|++++... . -+..+.+.|+. ...--+++||.|
T Consensus 282 ~d~ILVDTaGrs~~---D~~~i~el~~~~~~~-~~-i~~~Lvlsat~K~--~---dlkei~~~f~~--~~i~~~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQY---DKEKIEELKELIDVS-HS-IEVYLVLSATTKY--E---DLKEIIKQFSL--FPIDGLIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHHhcc-cc-ceEEEEEecCcch--H---HHHHHHHHhcc--CCcceeEEEccc
Confidence 57999999996532 233344555554433 22 3456788887332 1 22233332332 124457899999
Q ss_pred CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCccc
Q 024985 149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDA 190 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (259)
....- -.+-.++....-++.++++....+
T Consensus 350 ET~s~-------------G~~~s~~~e~~~PV~YvT~GQ~VP 378 (407)
T COG1419 350 ETTSL-------------GNLFSLMYETRLPVSYVTNGQRVP 378 (407)
T ss_pred ccCch-------------hHHHHHHHHhCCCeEEEeCCCCCC
Confidence 87542 234445555566777777764433
No 350
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.70 E-value=4.7e-07 Score=74.74 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHH-HHHHHhcccccCeEEEEEeC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIH-SLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~-~l~~~~~~~~~~~~ivV~nk 146 (259)
|..++||.|.|.+.+.. .+.. -+|.+++|.-+..+- +...++ =+.+ + -=++|+||
T Consensus 143 G~DvIIVETVGvGQsev-------~I~~-------~aDt~~~v~~pg~GD---~~Q~iK~GimE-i------aDi~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSEV-------DIAN-------MADTFLVVMIPGAGD---DLQGIKAGIME-I------ADIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcchh-------HHhh-------hcceEEEEecCCCCc---HHHHHHhhhhh-h------hheeeEec
Confidence 45699999999876422 2322 338888876543221 122222 1222 2 23589999
Q ss_pred CCCCCCCcccHHhhhCCCCCchHHHH---HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 147 GNELEDNDETLEDYLGPECPKPLKEI---LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.|.-.. .....++.. .++.. ....++++.++..++..+ +|+.+|.+.|.++....
T Consensus 199 aD~~~A-~~a~r~l~~-----al~~~~~~~~~~~W~ppv~~t~A~~g----~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 199 ADRKGA-EKAARELRS-----ALDLLREVWRENGWRPPVVTTSALEG----EGIDELWDAIEDHRKFL 256 (323)
T ss_pred cChhhH-HHHHHHHHH-----HHHhhcccccccCCCCceeEeeeccC----CCHHHHHHHHHHHHHHH
Confidence 994322 122222221 12222 334456666777665544 79999999998876543
No 351
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.70 E-value=7.4e-08 Score=81.24 Aligned_cols=58 Identities=33% Similarity=0.338 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
..++++|++|+|||||+|+|++......+... ..+|+........ . ...++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~--~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--G--GGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--C--CCEEEECCCCCc
Confidence 68999999999999999999997754433211 1234444433221 1 237999999954
No 352
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.69 E-value=1.1e-06 Score=77.87 Aligned_cols=145 Identities=16% Similarity=0.089 Sum_probs=76.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCcc-----------eeeEEEEE--------------Ee
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGSSGVT-----------KTCEMQRT--------------ML 65 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~~~~T-----------~~~~~~~~--------------~~ 65 (259)
..+..|+++|.+|+||||++..|.. ..+......+...+ .....+.. ..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3467899999999999999977742 11111111000000 00001100 00
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
.....++||||||.... ......++...... ..+|.+++|+|++.+ . ..++.... |.... ...-+|+|
T Consensus 173 ~~~~DvVIIDTAGr~~~---d~~lm~El~~l~~~--~~pdevlLVvda~~g--q---~av~~a~~-F~~~l-~i~gvIlT 240 (437)
T PRK00771 173 FKKADVIIVDTAGRHAL---EEDLIEEMKEIKEA--VKPDEVLLVIDATIG--Q---QAKNQAKA-FHEAV-GIGGIIIT 240 (437)
T ss_pred hhcCCEEEEECCCcccc---hHHHHHHHHHHHHH--hcccceeEEEecccc--H---HHHHHHHH-HHhcC-CCCEEEEe
Confidence 12237999999997632 33344444444322 246889999998743 1 23333333 33211 14568899
Q ss_pred CCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 146 GGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
|.|....- -.+-.+....+.++.++...
T Consensus 241 KlD~~a~~-------------G~~ls~~~~~~~Pi~fig~G 268 (437)
T PRK00771 241 KLDGTAKG-------------GGALSAVAETGAPIKFIGTG 268 (437)
T ss_pred cccCCCcc-------------cHHHHHHHHHCcCEEEEecC
Confidence 99976431 12333444556666666554
No 353
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=6.1e-08 Score=86.36 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=112.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc----------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
+..++|.+.-...+||||+.+.++--...... ....+.|.......+.| .+.++++|||||..
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCce
Confidence 35689999999999999999987632211110 01124555444444554 47899999999988
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~ 160 (259)
|... ++.+.+. -.|+.++|+++-.+...+.....+..++ ++. |.+..+||+|.+..
T Consensus 116 DFT~-------EVeRALr----VlDGaVlvl~aV~GVqsQt~tV~rQ~~r-y~v----P~i~FiNKmDRmGa-------- 171 (721)
T KOG0465|consen 116 DFTF-------EVERALR----VLDGAVLVLDAVAGVESQTETVWRQMKR-YNV----PRICFINKMDRMGA-------- 171 (721)
T ss_pred eEEE-------Eehhhhh----hccCeEEEEEcccceehhhHHHHHHHHh-cCC----CeEEEEehhhhcCC--------
Confidence 7643 3333332 3388889998877888888778887776 443 99999999999977
Q ss_pred hCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHhH
Q 024985 161 LGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE-NGGQPYSDEIFAELKKGA 228 (259)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 228 (259)
+....+..+.........+.+-..... ....|+.+|++...-+... ++......++.++.++..
T Consensus 172 ---~~~~~l~~i~~kl~~~~a~vqiPig~e-~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~ 236 (721)
T KOG0465|consen 172 ---SPFRTLNQIRTKLNHKPAVVQIPIGSE-SNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELA 236 (721)
T ss_pred ---ChHHHHHHHHhhcCCchheeEcccccc-ccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHH
Confidence 334456666666665444444432221 1336677766643322222 222233455555555443
No 354
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.1e-07 Score=86.75 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=79.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985 13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78 (259)
Q Consensus 13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG 78 (259)
.+.+....+|.++.....|||||..+|+......+. ....+.|-+...... ...+..+++||+||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~-~~~~~~~nlidspg 81 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL-LHKDYLINLIDSPG 81 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc-ccCceEEEEecCCC
Confidence 344566789999999999999999999765532211 011123322221111 13567899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
.-|+.. ++..... -+|..++++|+-.+.+.++..+++.. +... ..+++|+||+|.+
T Consensus 82 hvdf~s-------evssas~----l~d~alvlvdvvegv~~qt~~vlrq~---~~~~--~~~~lvinkidrl 137 (887)
T KOG0467|consen 82 HVDFSS-------EVSSASR----LSDGALVLVDVVEGVCSQTYAVLRQA---WIEG--LKPILVINKIDRL 137 (887)
T ss_pred ccchhh-------hhhhhhh----hcCCcEEEEeeccccchhHHHHHHHH---HHcc--CceEEEEehhhhH
Confidence 876432 4444333 34899999999889999888777732 2111 1788999999943
No 355
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=7e-07 Score=77.34 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-Cccee------------------eEEEEE----------EeeCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS-GVTKT------------------CEMQRT----------MLKDGQ 69 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~-~~T~~------------------~~~~~~----------~~~~~~ 69 (259)
...++|+|++|+||||++..|........+.... -.|.+ ...... ....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4689999999999999999987542211000000 00000 011101 012345
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccc---cCeEEEEEeC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKV---FDYMIVVFTG 146 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ivV~nk 146 (259)
.+++|||||.... +..+.+.+.. +.. ...+.-.++|++++.+....+ +.+..+....+.+. ....=+|+||
T Consensus 217 DlVLIDTaG~~~~---d~~l~e~La~-L~~-~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 217 HMVLIDTIGMSQR---DRTVSDQIAM-LHG-ADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred CEEEEcCCCCCcc---cHHHHHHHHH-Hhc-cCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEec
Confidence 7999999997632 1223333322 221 223445688999874433322 33444444332211 0134588899
Q ss_pred CCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985 147 GNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188 (259)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (259)
.|....- -.+-.++...+-++.++.+...
T Consensus 291 lDEt~~~-------------G~~l~~~~~~~lPi~yvt~Gq~ 319 (374)
T PRK14722 291 LDEASNL-------------GGVLDTVIRYKLPVHYVSTGQK 319 (374)
T ss_pred cccCCCc-------------cHHHHHHHHHCcCeEEEecCCC
Confidence 9987542 1333444455667777776543
No 356
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=3.5e-07 Score=88.70 Aligned_cols=128 Identities=17% Similarity=0.281 Sum_probs=76.3
Q ss_pred EEEcCCCCcHHHHHHHH-hCCCccc----ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh----HHHHHHH
Q 024985 23 VLVGRTGNGKSATGNSI-LGRRAFK----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS----EFVSKEI 93 (259)
Q Consensus 23 ~l~G~~g~GKSslin~l-~~~~~~~----~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~----~~~~~~~ 93 (259)
+++|++|+||||++..- ....... .+....+ |..|. +.-+..-++|||.|-+-...+. ...+..+
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccC-----cccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 56799999999988543 2111100 1111112 45444 3445567899999987544322 2234444
Q ss_pred HHHHhh--cCCCccEEEEEEeCCCC--CCHhHH--------HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985 94 VKCIGM--AKDGIHAVLLVFSVRNR--FSEEGG--------AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 94 ~~~~~~--~~~~~~~il~v~d~~~~--~~~~~~--------~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
...++. .....++||+.+++.+- .+..+. .-|..|.+.++... |++|++||.|++.. +++|.
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll~G----F~efF 276 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLLPG----FEEFF 276 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccccc----HHHHH
Confidence 444443 34578999999998622 222222 12455566666655 99999999999954 66666
Q ss_pred C
Q 024985 162 G 162 (259)
Q Consensus 162 ~ 162 (259)
.
T Consensus 277 ~ 277 (1188)
T COG3523 277 G 277 (1188)
T ss_pred h
Confidence 5
No 357
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=3.8e-07 Score=80.12 Aligned_cols=145 Identities=15% Similarity=0.150 Sum_probs=76.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-cceee-------------EEEEE---------------EeeCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG-VTKTC-------------EMQRT---------------MLKDG 68 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~-~T~~~-------------~~~~~---------------~~~~~ 68 (259)
...+|+|+|++|+||||++..|.+......+....+ .+.+. ....+ ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 457899999999999999998876421110000000 00000 00000 01234
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
..+++|||+|.... ......++... .. ....+-.++|++++... .+ +..+...|.. ....=+|+||.|
T Consensus 270 ~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~~--~~---~~~~~~~f~~--~~~~~~I~TKlD 337 (420)
T PRK14721 270 KHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSSG--DT---LDEVISAYQG--HGIHGCIITKVD 337 (420)
T ss_pred CCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCCH--HH---HHHHHHHhcC--CCCCEEEEEeee
Confidence 46899999997632 22233344332 21 22345678999987332 11 2222222321 125568899999
Q ss_pred CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985 149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT 187 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (259)
....- -.+-.++...+-++.++.+..
T Consensus 338 Et~~~-------------G~~l~~~~~~~lPi~yvt~Gq 363 (420)
T PRK14721 338 EAASL-------------GIALDAVIRRKLVLHYVTNGQ 363 (420)
T ss_pred CCCCc-------------cHHHHHHHHhCCCEEEEECCC
Confidence 87541 233344555566777777753
No 358
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=1.9e-06 Score=77.32 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=85.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC--------cccccCCCCCc-----------ceeeEEEEEE----------eeCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR--------AFKSKAGSSGV-----------TKTCEMQRTM----------LKDG 68 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~--------~~~~~~~~~~~-----------T~~~~~~~~~----------~~~~ 68 (259)
....|+|+|++|+||||++..|...- +.......... ...+.+.... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35789999999999999998886421 11011000000 0000111100 0124
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
..++||||||.... ......++.. +.... . ...++|++.+...... ..+++.+.. . .+.-+|+||+|
T Consensus 429 ~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~-~-~a~lLVLpAtss~~Dl-~eii~~f~~-~-----~~~gvILTKlD 495 (559)
T PRK12727 429 YKLVLIDTAGMGQR---DRALAAQLNW-LRAAR-Q-VTSLLVLPANAHFSDL-DEVVRRFAH-A-----KPQGVVLTKLD 495 (559)
T ss_pred CCEEEecCCCcchh---hHHHHHHHHH-HHHhh-c-CCcEEEEECCCChhHH-HHHHHHHHh-h-----CCeEEEEecCc
Confidence 57999999997632 1122222221 21111 1 3457888876332222 233443333 1 26779999999
Q ss_pred CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCccc-ccchhHHHHHHHHHHHHHHHhCCCCCCHH
Q 024985 149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDA-ATRTEQVGKLISLVNSVILENGGQPYSDE 219 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~eLl~~i~~~~~~~~~~~~~~~ 219 (259)
....- ..+-.++...+-.+.++.+....+ .-..-.-..|...+..+ ....+.+++.+
T Consensus 496 Et~~l-------------G~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l-~~~~~~~~~~~ 553 (559)
T PRK12727 496 ETGRF-------------GSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDL-RRAADKPCTPE 553 (559)
T ss_pred Cccch-------------hHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHH-HhhccCCCChh
Confidence 76431 123334445566677777654322 11112334455555553 33344455443
No 359
>PRK10867 signal recognition particle protein; Provisional
Probab=98.59 E-value=3.4e-06 Score=74.64 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=50.6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..++||||||.... +.....++....... .++.+++|+|+..+ .......+.+.+..+ ..-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~g--q~av~~a~~F~~~~~-----i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMTG--QDAVNTAKAFNEALG-----LTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEecccH--HHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 346999999996532 233344443332222 45778999997521 222233333333222 456888999
Q ss_pred CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
|.... .-.+-.+....+.++.++...
T Consensus 251 D~~~r-------------gG~alsi~~~~~~PI~fig~G 276 (433)
T PRK10867 251 DGDAR-------------GGAALSIRAVTGKPIKFIGTG 276 (433)
T ss_pred cCccc-------------ccHHHHHHHHHCcCEEEEeCC
Confidence 96533 112334455556555555543
No 360
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.59 E-value=1.5e-06 Score=74.36 Aligned_cols=75 Identities=11% Similarity=0.207 Sum_probs=46.4
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHhHHHHHHHHHHHhccc--
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR--------FSEEGGAAIHSLESLFGKK-- 135 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~-- 135 (259)
.++..+.+||++|-..- ...+. .+..++++++||+|.++- ....-.+.+..+..++..+
T Consensus 158 ~~~~~~~~~DvgGq~~~-------R~kW~----~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 158 IKNLKFRMFDVGGQRSE-------RKKWI----HCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ecceEEEEECCCCCccc-------chhHH----HHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 34567999999995321 11222 245578999999998721 0122234445555544433
Q ss_pred ccCeEEEEEeCCCCCC
Q 024985 136 VFDYMIVVFTGGNELE 151 (259)
Q Consensus 136 ~~~~~ivV~nk~D~~~ 151 (259)
...|+++++||.|...
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 2359999999999774
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.56 E-value=1.9e-06 Score=75.33 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccc-------ccCCCC-Cc----------ceeeEEEEE-------E--eeCCcEE
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFK-------SKAGSS-GV----------TKTCEMQRT-------M--LKDGQVV 71 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~-------~~~~~~-~~----------T~~~~~~~~-------~--~~~~~~~ 71 (259)
...|+++|++||||||++..|....... ....+. .. ......... . ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4579999999999999998886422110 000000 00 000000100 0 0124578
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAK-DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
+||||||+.... .....++...+.... ...+-.++|+|++.+.. .-...++.... ++ +-=+|+||.|..
T Consensus 303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~-~~-----~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYES-LN-----YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcC-CC-----CCEEEEEcccCC
Confidence 999999976422 223334444433221 22456789999873321 11222332211 22 556899999987
Q ss_pred CCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985 151 EDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188 (259)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (259)
..- -.+-.+....+-++.++.....
T Consensus 373 ~~~-------------G~il~i~~~~~lPI~ylt~GQ~ 397 (432)
T PRK12724 373 DFL-------------GSFLELADTYSKSFTYLSVGQE 397 (432)
T ss_pred CCc-------------cHHHHHHHHHCCCEEEEecCCC
Confidence 441 1233445555667777776543
No 362
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.55 E-value=1.3e-06 Score=81.55 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-Ccceee------------------EEEEE----------EeeCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS-GVTKTC------------------EMQRT----------MLKDGQ 69 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~-~~T~~~------------------~~~~~----------~~~~~~ 69 (259)
...|+|+|++||||||++..|.+......+.... -.+.+. ..... ....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4689999999999999999988654211110000 000000 00000 012344
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
.++||||||.... +....+++..... ...++-+++|+|++.. ..+ .++++.+....+. .+.=+|+||.|
T Consensus 265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~---~i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE---DVDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC---CCCEEEEeccC
Confidence 7999999996542 2223444433221 2345677899998732 222 1233333321111 14458899999
Q ss_pred CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985 149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (259)
.... --.+-.+....+-++.++.+...
T Consensus 335 Et~~-------------~G~iL~i~~~~~lPI~yit~GQ~ 361 (767)
T PRK14723 335 EATH-------------LGPALDTVIRHRLPVHYVSTGQK 361 (767)
T ss_pred CCCC-------------ccHHHHHHHHHCCCeEEEecCCC
Confidence 8754 12334455555667777776543
No 363
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.55 E-value=8.3e-07 Score=76.50 Aligned_cols=145 Identities=17% Similarity=0.094 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCCC--Cc-c--------eeeEEEEEEe-------------eC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR------RAFKSKAGSS--GV-T--------KTCEMQRTML-------------KD 67 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~------~~~~~~~~~~--~~-T--------~~~~~~~~~~-------------~~ 67 (259)
+...|+++|++|+||||++..|... .+......+. +. . ..+.+..... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 4678999999999999999887531 1111111110 00 0 0011110000 02
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..++||||||... .......++....... .+|.+++|++++ ....+ ..+.+.. |.. ...--+|+||.
T Consensus 285 ~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence 45899999999753 2233344444443322 456777888764 22222 3333333 221 12556889999
Q ss_pred CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985 148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT 187 (259)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (259)
|.... --.+-.+....+-++.++....
T Consensus 353 DET~~-------------~G~~Lsv~~~tglPIsylt~GQ 379 (407)
T PRK12726 353 DETTR-------------IGDLYTVMQETNLPVLYMTDGQ 379 (407)
T ss_pred cCCCC-------------ccHHHHHHHHHCCCEEEEecCC
Confidence 98744 1233445556677777777754
No 364
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.51 E-value=6.7e-07 Score=79.26 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=74.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc--------ccccCCCCC------cc-----eeeEEEEE----------EeeCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA--------FKSKAGSSG------VT-----KTCEMQRT----------MLKDGQ 69 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~--------~~~~~~~~~------~T-----~~~~~~~~----------~~~~~~ 69 (259)
...|+|+|++||||||++..|..... ......+.. .. ..+..... ....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 45899999999999999877653221 100111100 00 00000000 001245
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE 149 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~ 149 (259)
.++||||||.... .......+...+... ...+-+++|++++... ..-..+++.+.. ++ +.-+|+||+|.
T Consensus 301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~~-~~l~~~~~~f~~-~~-----~~~vI~TKlDe 369 (424)
T PRK05703 301 DVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATTKY-EDLKDIYKHFSR-LP-----LDGLIFTKLDE 369 (424)
T ss_pred CEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCCCH-HHHHHHHHHhCC-CC-----CCEEEEecccc
Confidence 7999999997532 222233444444422 1234667888876221 111222232221 11 33588999998
Q ss_pred CCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985 150 LEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT 187 (259)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (259)
... -..+-.++...+.++.++.+..
T Consensus 370 t~~-------------~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 370 TSS-------------LGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred ccc-------------ccHHHHHHHHHCCCEEEEeCCC
Confidence 644 1134455666677777777753
No 365
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.4e-07 Score=80.76 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=91.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccc----------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFK----------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~----------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~ 82 (259)
.++|.++....+||||....|+=-..+. ......|.|.......+. +.|.++++|||||.-+.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd-wkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD-WKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc-cccceEeeecCCCcceE
Confidence 4789999999999999998875211100 001112555555555555 57899999999998876
Q ss_pred CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985 83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG 162 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~ 162 (259)
.. ++.+++... |+++.|+|++.+...+...+++.-.+ +. -|.+..+||+|.+..
T Consensus 116 ~l-------everclrvl----dgavav~dasagve~qtltvwrqadk-~~----ip~~~finkmdk~~a---------- 169 (753)
T KOG0464|consen 116 RL-------EVERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADK-FK----IPAHCFINKMDKLAA---------- 169 (753)
T ss_pred EE-------EHHHHHHHh----cCeEEEEeccCCcccceeeeehhccc-cC----Cchhhhhhhhhhhhh----------
Confidence 54 444444433 89999999998887776555554433 22 388888999998854
Q ss_pred CCCCchHHHHHHHcCCcEEEEeCC
Q 024985 163 PECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
++......+.++.+.+...+.-.
T Consensus 170 -nfe~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464|consen 170 -NFENAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred -hhhhHHHHHHHHhCCceEEEEec
Confidence 22223445556666665555443
No 366
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.51 E-value=3.2e-06 Score=73.01 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=46.8
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHhHHHHHHHHHHHhccc--
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR--------FSEEGGAAIHSLESLFGKK-- 135 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~-- 135 (259)
.++..+.+||..|-..- ...+ ..++.+++++|||+|.++- ....-.+.+..+..++..+
T Consensus 181 ~~~~~~~~~DvgGqr~~-------R~kW----~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 181 VKKLFFRMFDVGGQRSE-------RKKW----IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred ECCeEEEEEecCCchhh-------hhhH----HHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 34567899999994311 1122 2245678999999998721 0112234455555555443
Q ss_pred ccCeEEEEEeCCCCCC
Q 024985 136 VFDYMIVVFTGGNELE 151 (259)
Q Consensus 136 ~~~~~ivV~nk~D~~~ 151 (259)
...|++|++||.|...
T Consensus 250 ~~~piil~~NK~D~~~ 265 (342)
T smart00275 250 ANTSIILFLNKIDLFE 265 (342)
T ss_pred cCCcEEEEEecHHhHH
Confidence 2359999999999874
No 367
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.49 E-value=9.6e-07 Score=67.82 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+.++++|..|+|||||++.++..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 35789999999999999998765
No 368
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.48 E-value=1.2e-06 Score=69.79 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+.+|+++|++|+|||||++.+++.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988764
No 369
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.45 E-value=1.4e-05 Score=70.75 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=51.7
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..++||||||.... +.....++..... ...++.++||+|+..+ .........+.+..+ ..=+|+||.
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~--~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~-----i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKE--ILNPDEILLVVDAMTG--QDAVNTAKTFNERLG-----LTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHH--hhCCceEEEEEeccch--HHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 346999999996531 2233444433332 1246788999998622 222333333333222 456889999
Q ss_pred CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
|.... .-.+-.+....+.++.++...
T Consensus 250 D~~~~-------------~G~~lsi~~~~~~PI~fi~~G 275 (428)
T TIGR00959 250 DGDAR-------------GGAALSVRSVTGKPIKFIGVG 275 (428)
T ss_pred cCccc-------------ccHHHHHHHHHCcCEEEEeCC
Confidence 96532 112444555556565555543
No 370
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=4.9e-06 Score=72.68 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC----------cccccCCCC--Cc--------c-eeeEEEEEE----------ee
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR----------AFKSKAGSS--GV--------T-KTCEMQRTM----------LK 66 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~----------~~~~~~~~~--~~--------T-~~~~~~~~~----------~~ 66 (259)
.+..|+++|++|+||||++..|.... +......+. +. . ....+.... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35689999999999999998875321 111111000 00 0 000011000 12
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
.+..+++|||||.... +.....++...+....+ .+-+++|+|++.+. .+ +.+.+... .. ..+.=+|+||
T Consensus 253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~--~~--~~~~~~~~-~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGR-DAEFHLAVSSTTKT--SD--VKEIFHQF-SP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCH--HH--HHHHHHHh-cC--CCCCEEEEEe
Confidence 3457999999997642 22223445454443322 23578999998442 22 22333332 11 1155689999
Q ss_pred CCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 147 GNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.|.... --.+-.+....+-++.++...
T Consensus 322 lDet~~-------------~G~~l~~~~~~~~Pi~yit~G 348 (388)
T PRK12723 322 LDETTC-------------VGNLISLIYEMRKEVSYVTDG 348 (388)
T ss_pred ccCCCc-------------chHHHHHHHHHCCCEEEEeCC
Confidence 998744 123334455556667677665
No 371
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.40 E-value=4.9e-06 Score=74.40 Aligned_cols=145 Identities=16% Similarity=0.159 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-Ccceee-------------EEEEE---------------EeeCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS-GVTKTC-------------EMQRT---------------MLKDGQ 69 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~-~~T~~~-------------~~~~~---------------~~~~~~ 69 (259)
...++|+|++||||||++..|.+......+.... -.+.+. ....+ ....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 4689999999999999999987543211110000 000000 00000 001234
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE 149 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~ 149 (259)
.+++|||+|.... ..... +....+..... ++-.++|+|++... . .+.+.+.. |... ...-+|+||.|.
T Consensus 336 d~VLIDTaGr~~~---d~~~~-e~~~~l~~~~~-p~e~~LVLdAt~~~--~--~l~~i~~~-f~~~--~~~g~IlTKlDe 403 (484)
T PRK06995 336 HIVLIDTIGMSQR---DRMVS-EQIAMLHGAGA-PVKRLLLLNATSHG--D--TLNEVVQA-YRGP--GLAGCILTKLDE 403 (484)
T ss_pred CeEEeCCCCcChh---hHHHH-HHHHHHhccCC-CCeeEEEEeCCCcH--H--HHHHHHHH-hccC--CCCEEEEeCCCC
Confidence 6899999996531 11112 22222222222 23368899987332 1 12222222 3221 245678999997
Q ss_pred CCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985 150 LEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188 (259)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (259)
... -..+-.++...+.++.++.....
T Consensus 404 t~~-------------~G~~l~i~~~~~lPI~yvt~GQ~ 429 (484)
T PRK06995 404 AAS-------------LGGALDVVIRYKLPLHYVSNGQR 429 (484)
T ss_pred ccc-------------chHHHHHHHHHCCCeEEEecCCC
Confidence 643 22344455566777777777643
No 372
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.39 E-value=1.3e-06 Score=72.85 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.+...|.|+|.+|||||||++.+++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999888754
No 373
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=72.44 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=46.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcc----cccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAF----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~----~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
+..+.+.++|-||+|||||||++...... ......+|.|+.+... +.......+.++||||......
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCC
Confidence 45689999999999999999998543321 1112245677655542 3334566899999999986543
No 374
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.35 E-value=5.4e-06 Score=68.94 Aligned_cols=146 Identities=20% Similarity=0.157 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCC-----------CcceeeEEEEEE-------------eeC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSS-----------GVTKTCEMQRTM-------------LKD 67 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~-----------~~T~~~~~~~~~-------------~~~ 67 (259)
+..+|+++|++|+||||++..|.+.-. ......+. ............ ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 447999999999999999988754311 00000000 000001111000 012
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..++||||||.... ......++...+... .++-+++|++++... . ...+.+.. |.. ..+--+|+||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~~--~--d~~~~~~~-f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMKS--K--DMIEIITN-FKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccCH--H--HHHHHHHH-hCC--CCCCEEEEEee
Confidence 458999999997532 233344454444322 446789999986221 1 22333333 322 22556899999
Q ss_pred CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985 148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188 (259)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (259)
|.... --.+-.+....+.++.++.+...
T Consensus 222 Det~~-------------~G~~l~~~~~~~~Pi~~it~Gq~ 249 (270)
T PRK06731 222 DETAS-------------SGELLKIPAVSSAPIVLMTDGQD 249 (270)
T ss_pred cCCCC-------------ccHHHHHHHHHCcCEEEEeCCCC
Confidence 98754 12333445556777777776543
No 375
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.33 E-value=2e-05 Score=68.41 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=70.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCC--C---------CcceeeEEEEEE--------------
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGS--S---------GVTKTCEMQRTM-------------- 64 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~--~---------~~T~~~~~~~~~-------------- 64 (259)
..++..|+++|--|+||||..-.|.. ..+..+.... + +....+.++...
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 34567999999999999999877642 1111111000 0 000111111110
Q ss_pred --eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEE
Q 024985 65 --LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIV 142 (259)
Q Consensus 65 --~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 142 (259)
...+..++||||.|-.. ..+.+..++...-. .-.+|-+|||+|+..+- .-....+.+.+.++ -.=|
T Consensus 177 ~ak~~~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~GQ--dA~~~A~aF~e~l~-----itGv 244 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIGQ--DAVNTAKAFNEALG-----ITGV 244 (451)
T ss_pred HHHHcCCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccch--HHHHHHHHHhhhcC-----CceE
Confidence 01234699999999663 34556666554432 23678999999987332 12334555555444 4458
Q ss_pred EEeCCCCCCC
Q 024985 143 VFTGGNELED 152 (259)
Q Consensus 143 V~nk~D~~~~ 152 (259)
|+||.|....
T Consensus 245 IlTKlDGdaR 254 (451)
T COG0541 245 ILTKLDGDAR 254 (451)
T ss_pred EEEcccCCCc
Confidence 9999997643
No 376
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.7e-06 Score=65.47 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=72.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--eCC-cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--KDG-QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~-~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
...++++++|..|.||+|+.++.+-.+.-.... .|.....+.... ..| .++..|||.|......
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~----at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg--------- 74 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP----ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG--------- 74 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceeccc----CcceeEEeeeeeecccCcEEEEeeecccceeecc---------
Confidence 347899999999999999999987666422222 222233332221 223 5899999999542111
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.-.-.+-+..+.++++|++.+++-.. ..+-+-+...++. .|+++..||.|-...
T Consensus 75 --lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 75 --LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKAR 129 (216)
T ss_pred --cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecccc
Confidence 00112223467789999987766543 3344445554442 499999999996544
No 377
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.27 E-value=2.5e-05 Score=66.73 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=48.7
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhH------HHHHHHHHHHhccccc
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEG------GAAIHSLESLFGKKVF 137 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~------~~~l~~l~~~~~~~~~ 137 (259)
..+.++.++|++|-.. +-.++ ..+..++++||||++.+ +....+| .+.++.+..++..+++
T Consensus 192 ~k~~~f~~~DvGGQRs----------eRrKW-ihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRS----------ERKKW-IHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred eCCCceEEEeCCCcHH----------HhhhH-HHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 5677899999999321 11122 12678899999999976 1222222 3445555555554433
Q ss_pred --CeEEEEEeCCCCCCC
Q 024985 138 --DYMIVVFTGGNELED 152 (259)
Q Consensus 138 --~~~ivV~nk~D~~~~ 152 (259)
.++|+.+||.|+.+.
T Consensus 261 ~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccCcEEEEeecHHHHHH
Confidence 489999999999854
No 378
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.26 E-value=1e-06 Score=71.14 Aligned_cols=122 Identities=16% Similarity=0.224 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.-+|.++|.|++||||++..|+|..- .+.....|+.....+...+.+-.+.+.|.||+.+...+...-.+++.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvi---- 131 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVI---- 131 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEE----
Confidence 45899999999999999999998764 22223344444444444467889999999999876554433333332
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccccc-CeEEEEEeCCCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF-DYMIVVFTGGNE 149 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivV~nk~D~ 149 (259)
..++-++++++|+|+-.+++ .+.+++.-.+.||...+ .|--+.+.|-|.
T Consensus 132 avartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdk 181 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDK 181 (358)
T ss_pred EEeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCcccccccc
Confidence 23445589999999874544 34566654455665433 244444444443
No 379
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.21 E-value=1.1e-06 Score=75.02 Aligned_cols=63 Identities=25% Similarity=0.388 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
....++.++|-+|+||||+||+|........+. .+|.|+..+.. .-+..+.|+|.||+.....
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV----~Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEV----KLDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhe----eccCCceeccCCceeecCC
Confidence 345899999999999999999999888766654 46677655543 3457899999999875543
No 380
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.17 E-value=1.1e-05 Score=61.76 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=53.6
Q ss_pred CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985 102 DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRV 181 (259)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (259)
.++|++|+|+|++.+....+..+...+.. .+ +|+++|+||+|+.+. ..... +..+.+..+..++
T Consensus 11 ~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~~~~~---------~~~~~~~~~~~~~ 74 (156)
T cd01859 11 KESDVVLEVLDARDPELTRSRKLERYVLE-LG----KKLLIVLNKADLVPK--EVLEK---------WKSIKESEGIPVV 74 (156)
T ss_pred hhCCEEEEEeeCCCCcccCCHHHHHHHHh-CC----CcEEEEEEhHHhCCH--HHHHH---------HHHHHHhCCCcEE
Confidence 35699999999975555555444444432 23 499999999998643 11111 1112222233444
Q ss_pred EEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 182 LFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 182 ~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+++.. ..++.+|++.+.++++..
T Consensus 75 ~iSa~~------~~gi~~L~~~l~~~~~~~ 98 (156)
T cd01859 75 YVSAKE------RLGTKILRRTIKELAKID 98 (156)
T ss_pred EEEccc------cccHHHHHHHHHHHHhhc
Confidence 444433 268999999999888753
No 381
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.17 E-value=3.2e-05 Score=66.02 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------------CCCcceeeEEEEEEeeC----------------
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------------SSGVTKTCEMQRTMLKD---------------- 67 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------------~~~~T~~~~~~~~~~~~---------------- 67 (259)
......|+.+|..++|||||.-+|.-...-..... -.+.|....+.-+.+.+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 34568899999999999999988753332000000 01222222222211111
Q ss_pred ------CcEEEEEeCCCCCCCCCChHHHHHH-HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE
Q 024985 68 ------GQVVNVIDTPGLFDSSADSEFVSKE-IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM 140 (259)
Q Consensus 68 ------~~~~~liDTPG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (259)
++-+.|+||-|... |.+. +... .-.++|-.++++-++++.+...++-|-..... + -|+
T Consensus 194 ~vv~~aDklVsfVDtvGHEp-------wLrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-~----lPv 258 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEP-------WLRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM-E----LPV 258 (527)
T ss_pred HhhhhcccEEEEEecCCccH-------HHHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh-c----CCE
Confidence 23488999999431 2222 2222 22367899999999988888777766655432 2 299
Q ss_pred EEEEeCCCCCCC
Q 024985 141 IVVFTGGNELED 152 (259)
Q Consensus 141 ivV~nk~D~~~~ 152 (259)
+||+||+|..++
T Consensus 259 iVvvTK~D~~~d 270 (527)
T COG5258 259 IVVVTKIDMVPD 270 (527)
T ss_pred EEEEEecccCcH
Confidence 999999999877
No 382
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.17 E-value=6.3e-05 Score=58.49 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=41.1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..++++||||.... .......+..... ...++.+++|+++... ......+..+.+..+ ..-+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 446899999996531 1222333333222 1246899999998522 222233333333223 456888999
Q ss_pred CCCCC
Q 024985 148 NELED 152 (259)
Q Consensus 148 D~~~~ 152 (259)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 97754
No 383
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.14 E-value=1.4e-06 Score=74.28 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=45.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~ 83 (259)
.....-|.++|.+|+||||+||+|-...+..+.. -+|.|...++.. --+.+.+||+||+-...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYIt----LmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYIT----LMKRIFLIDCPGVVYPS 366 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHH----HHhceeEecCCCccCCC
Confidence 3456789999999999999999999888755432 234454444332 12578999999986544
No 384
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=5.5e-06 Score=70.28 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=74.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc------------CCCCCcceeeEE--EEEE---------------
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK------------AGSSGVTKTCEM--QRTM--------------- 64 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~------------~~~~~~T~~~~~--~~~~--------------- 64 (259)
+...-..+++++|--.+|||||+-.|+....-... .-..+.|..+.. .++.
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 33445689999999999999999888754321100 000111111110 0000
Q ss_pred ---eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEE
Q 024985 65 ---LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI 141 (259)
Q Consensus 65 ---~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i 141 (259)
.....-+.+||.+|... +.+....-+ .---+|..++|+.++.+++....+-|-.+..+ . .|++
T Consensus 242 Ei~e~SSKlvTfiDLAGh~k-------Y~~TTi~gL--tgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-~----iPfF 307 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAK-------YQKTTIHGL--TGYTPHFACLVVSADRGITWTTREHLGLIAAL-N----IPFF 307 (591)
T ss_pred HHHhhhcceEEEeecccchh-------hheeeeeec--ccCCCceEEEEEEcCCCCccccHHHHHHHHHh-C----CCeE
Confidence 01122488899888431 111111111 12246899999999888888777777777663 3 2999
Q ss_pred EEEeCCCCCCC
Q 024985 142 VVFTGGNELED 152 (259)
Q Consensus 142 vV~nk~D~~~~ 152 (259)
|++||+|+...
T Consensus 308 vlvtK~Dl~~~ 318 (591)
T KOG1143|consen 308 VLVTKMDLVDR 318 (591)
T ss_pred EEEEeeccccc
Confidence 99999999876
No 385
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.13 E-value=2.1e-07 Score=71.18 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccc-CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSK-AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.+++++|.-|+||||++...+-... ... .+..+...-..........-.++.+||..|-. ++..+..
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nf-s~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe-----------rfg~mtr 93 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNF-SYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE-----------RFGNMTR 93 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHH-HHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh-----------hhcceEE
Confidence 5899999999999999987653331 010 01112221111111111111267789999943 3333444
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHH-------hcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESL-------FGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~-------~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
.+++.+|+..+|+|.++..+.+- ..++..++ +|.+. |+++..||||.-.. ..+..-+.
T Consensus 94 Vyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv--~~vllankCd~e~~-----------a~~~~~~~ 158 (229)
T KOG4423|consen 94 VYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPV--PCVLLANKCDQEKS-----------AKNEATRQ 158 (229)
T ss_pred EEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcc--hheeccchhccChH-----------hhhhhHHH
Confidence 56788999999999996666543 23333322 24333 88999999997654 11222223
Q ss_pred HHHHcCCc--EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 172 ILQLCENR--RVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 172 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
+-+.+.+. .-.|..+.+.. .++.|..+.+.+.+-.+..
T Consensus 159 ~d~f~kengf~gwtets~Ken----kni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 159 FDNFKKENGFEGWTETSAKEN----KNIPEAQRELVEKILVNDE 198 (229)
T ss_pred HHHHHhccCccceeeeccccc----cChhHHHHHHHHHHHhhcc
Confidence 33344332 22455554443 6788887777666555543
No 386
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.12 E-value=1.7e-05 Score=66.74 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCC---------------CCcceeeEEEE----------E--
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGS---------------SGVTKTCEMQR----------T-- 63 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~---------------~~~T~~~~~~~----------~-- 63 (259)
+.+..|+++|-.|+||||.|-.|.. ..+......+ .++..-....+ +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 4578999999999999999988742 1111100000 01100000000 0
Q ss_pred EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh---hcC-CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985 64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG---MAK-DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 64 ~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
-...+..++||||.|-..+. ..++.++.+... ... ..+|-+++|+|++.+-.. ..-.+.+.+..+ -
T Consensus 217 Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna--l~QAk~F~eav~-----l 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA--LSQAKIFNEAVG-----L 286 (340)
T ss_pred HHHcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH--HHHHHHHHHhcC-----C
Confidence 01235579999999976443 334555544433 222 245779999999744222 233444444444 3
Q ss_pred EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.=+|+||+|.... --.+-.+....+-++.++-..
T Consensus 287 ~GiIlTKlDgtAK-------------GG~il~I~~~l~~PI~fiGvG 320 (340)
T COG0552 287 DGIILTKLDGTAK-------------GGIILSIAYELGIPIKFIGVG 320 (340)
T ss_pred ceEEEEecccCCC-------------cceeeeHHHHhCCCEEEEeCC
Confidence 3488999995422 112334455556666555443
No 387
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.09 E-value=9.1e-06 Score=63.82 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=46.5
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH---HHHHHHHHHHhcccccCeEEEEEeC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG---GAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~---~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
.+.++|+||-.+-.. .--+...+.+++....-.+ +++|++|.. -+.... ...+..+.....-+ .|.|=|++|
T Consensus 99 dylifDcPGQIELyt-H~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE--~P~INvlsK 173 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYT-HLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMISLE--VPHINVLSK 173 (273)
T ss_pred CEEEEeCCCeeEEee-cChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhc--CcchhhhhH
Confidence 689999999764321 2235667777766543343 567777764 222222 22344444333323 399999999
Q ss_pred CCCCCC
Q 024985 147 GNELED 152 (259)
Q Consensus 147 ~D~~~~ 152 (259)
+|++.+
T Consensus 174 MDLlk~ 179 (273)
T KOG1534|consen 174 MDLLKD 179 (273)
T ss_pred HHHhhh
Confidence 999865
No 388
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.09 E-value=2.1e-05 Score=68.19 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=89.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC-----------------CcccccCCCCCcceeeEEEE-----EEeeCC--cEE
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGR-----------------RAFKSKAGSSGVTKTCEMQR-----TMLKDG--QVV 71 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~-----------------~~~~~~~~~~~~T~~~~~~~-----~~~~~~--~~~ 71 (259)
..+...|.+|||..+||||||..+... +.+.++....-.|+.+.+.. +...++ .++
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 456789999999999999999997532 23333333333444444332 221222 379
Q ss_pred EEEeCCCCCCCCCC--hHHHHHHH------------HHHHhhc-----CCCcc-EEEEEEeCC-CCCC-----HhHHHHH
Q 024985 72 NVIDTPGLFDSSAD--SEFVSKEI------------VKCIGMA-----KDGIH-AVLLVFSVR-NRFS-----EEGGAAI 125 (259)
Q Consensus 72 ~liDTPG~~~~~~~--~~~~~~~~------------~~~~~~~-----~~~~~-~il~v~d~~-~~~~-----~~~~~~l 125 (259)
++||+.|+.-..+. .+.-..++ ..++... ...+- ++++-.|.+ ..+. ..+.+.+
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 99999887521110 00000111 1111111 11222 333444654 2333 3345667
Q ss_pred HHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHH
Q 024985 126 HSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLV 204 (259)
Q Consensus 126 ~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i 204 (259)
+.|++ .|+ |++|++|-.+-..+ ++ .....++.++++-.+..++...-. ...+..+|+.+
T Consensus 174 ~ELk~-igK----PFvillNs~~P~s~--et---------~~L~~eL~ekY~vpVlpvnc~~l~----~~DI~~Il~~v 232 (492)
T PF09547_consen 174 EELKE-IGK----PFVILLNSTKPYSE--ET---------QELAEELEEKYDVPVLPVNCEQLR----EEDITRILEEV 232 (492)
T ss_pred HHHHH-hCC----CEEEEEeCCCCCCH--HH---------HHHHHHHHHHhCCcEEEeehHHcC----HHHHHHHHHHH
Confidence 77777 354 99999997764332 11 123446667777777777765322 24555555543
No 389
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.07 E-value=1.8e-05 Score=66.46 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=58.0
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
...+.+......+|++|+|+|+..+++..+..+.+.+. + +|+++|+||+|+.+. .....+. .
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~---~----kp~IiVlNK~DL~~~--~~~~~~~---------~ 71 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG---N----KPRLIVLNKADLADP--AVTKQWL---------K 71 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC---C----CCEEEEEEccccCCH--HHHHHHH---------H
Confidence 33444445556779999999998666655544444441 2 499999999998643 2222211 1
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+..+..++.+++... .++.+|++.+.+++++.
T Consensus 72 ~~~~~~~~vi~iSa~~~------~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 72 YFEEKGIKALAINAKKG------KGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHHHcCCeEEEEECCCc------ccHHHHHHHHHHHHHHh
Confidence 12222334455555432 57888988888777543
No 390
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.03 E-value=6.8e-05 Score=56.86 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 024985 22 LVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~ 41 (259)
|.++|++|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988753
No 391
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.02 E-value=2.2e-05 Score=60.10 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=55.1
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
+...+|++++|+|+..++...+..+.+.+... . ...|+++|+||+|+.+. ..+..++ ..+.+.. .
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~--~~~p~ilVlNKiDl~~~--~~~~~~~--------~~~~~~~--~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-K--PHKHLIFVLNKCDLVPT--WVTARWV--------KILSKEY--P 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhc-c--CCCCEEEEEEchhcCCH--HHHHHHH--------HHHhcCC--c
Confidence 45577999999999866666666677776642 1 12499999999999754 2222222 1222211 2
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
...|..++.. ..++.+|++.+.++.
T Consensus 70 ~~~~~iSa~~----~~~~~~L~~~l~~~~ 94 (157)
T cd01858 70 TIAFHASINN----PFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEEeeccc----cccHHHHHHHHHHHH
Confidence 2233333332 267888888887764
No 392
>PRK01889 GTPase RsgA; Reviewed
Probab=98.01 E-value=4e-06 Score=72.83 Aligned_cols=58 Identities=33% Similarity=0.416 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
..+++++|.+|+|||||+|+|+|......+.- ...+|+...... ..+ ...++||||+.
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~---l~~-~~~l~DtpG~~ 258 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP---LPS-GGLLIDTPGMR 258 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE---ecC-CCeecCCCchh
Confidence 35899999999999999999998765333211 111222222222 122 23588999975
No 393
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.99 E-value=2.6e-05 Score=60.66 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
.+...+......+|++++|+|+..+....+..+++.+ .+ +|+++|+||+|+.+. .....++ +
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~---~~----k~~ilVlNK~Dl~~~--~~~~~~~---------~ 69 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL---GN----KPRIIVLNKADLADP--KKTKKWL---------K 69 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh---cC----CCEEEEEehhhcCCh--HHHHHHH---------H
Confidence 3334444455677999999999755554444333332 22 489999999998643 2221111 1
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+.....++..+... ..++.+|++.+.+.++
T Consensus 70 ~~~~~~~~vi~iSa~~------~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 70 YFESKGEKVLFVNAKS------GKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHHhcCCeEEEEECCC------cccHHHHHHHHHHHHH
Confidence 1222223344444432 2689999998888764
No 394
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.99 E-value=4.8e-06 Score=77.25 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEE----------------------------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQR---------------------------------- 62 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~---------------------------------- 62 (259)
..-+.|+++|..++||||+++++.|....+-+.. -+|+.+.+..
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~ 104 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIR 104 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHH
Confidence 4568999999999999999999999776554321 1222111111
Q ss_pred ---------------------EEeeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCC
Q 024985 63 ---------------------TMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-NRFS 118 (259)
Q Consensus 63 ---------------------~~~~~~~~~~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~ 118 (259)
+....-.++.+||+||+..... ++..+..++..++..+....+++++.+... ..+.
T Consensus 105 ~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~a 184 (657)
T KOG0446|consen 105 SETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIA 184 (657)
T ss_pred hhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhh
Confidence 0101112588999999985443 345677788888777777778887777554 2222
Q ss_pred HhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 119 EEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 119 ~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..+.+....+.- +....++.|+||+|+.+.
T Consensus 185 --ts~alkiarevD--p~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 185 --TSPALVVAREVD--PGGSRTLEVITKFDFMDK 214 (657)
T ss_pred --cCHHHHHHHhhC--CCccchhHHhhhHHhhhc
Confidence 233555555531 233589999999999854
No 395
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.96 E-value=7.2e-05 Score=62.19 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=63.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCcceeeEEEEEE--eeCCcEEEEEeCCCCCCC-CCChHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRR-AFKSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDS-SADSEFVSK 91 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~T~~~~~~~~~--~~~~~~~~liDTPG~~~~-~~~~~~~~~ 91 (259)
..+...|.++|+..+|||.|+|.|++.. .|..+.+..++|...-..... ...+..+.++||.|+.+. ......-..
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~~~~d~~ 97 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSDEKYDAK 97 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCCCHHCHH
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccccccCcccccHH
Confidence 3455789999999999999999999753 455555556667654443322 123458999999999883 222221111
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES 130 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~ 130 (259)
-+.-++-.+ ..+||=. ...+...+...|..+.+
T Consensus 98 if~Ls~LLS----S~~IyN~--~~~i~~~~l~~L~~~~~ 130 (260)
T PF02263_consen 98 IFALSMLLS----SVLIYNS--MGNIDEDDLDQLELFTE 130 (260)
T ss_dssp HHHHHHHH-----SEEEEEE--CSSSSHHHHHCCHHHHH
T ss_pred HHHHHHHHh----CceeeCC--CCccchhHHHHHHHHHH
Confidence 222121222 3444444 44566666555554433
No 396
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.90 E-value=5.8e-05 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+|+++|.+|+|||+|+..+....
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~ 24 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFP 24 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCC
Confidence 79999999999999999985443
No 397
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.90 E-value=3.1e-05 Score=60.30 Aligned_cols=23 Identities=26% Similarity=0.266 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.+.|.+.|++|||||+|+-.++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH
Confidence 37999999999999999988653
No 398
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=9.1e-05 Score=59.50 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+++|+|+|--.+||||+-...+....+..... ...|.......+. ..=.++.+||.||-.+.-.+.-...
T Consensus 25 ~~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlf-lESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D~e------ 96 (347)
T KOG3887|consen 25 GMKPRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFDYE------ 96 (347)
T ss_pred CCCceEEEEeecccCcchhhheeeeccCCCceeE-eeccCcccHhhhh-hhhcceEEeecCCccccCCCccCHH------
Confidence 3457899999999999998776654432111100 0011111111111 0113688999999653321111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
....++-+++||+|+.+.+.+.-..+...+...+.....-++=|.+.|.|.+.+
T Consensus 97 --~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 97 --MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred --HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 123355899999998743332222233334444444444467788999999865
No 399
>PRK13695 putative NTPase; Provisional
Probab=97.86 E-value=0.00026 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
+|+|.|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987643
No 400
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.85 E-value=8.4e-05 Score=62.77 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=55.5
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
..+.+......+|++|+|+|+..+++..+..+.+.+. .+|+++|+||+|+.+. ...+.++ ..
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~-------~kp~iiVlNK~DL~~~--~~~~~~~---------~~ 75 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG-------NKPRLLILNKSDLADP--EVTKKWI---------EY 75 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC-------CCCEEEEEEchhcCCH--HHHHHHH---------HH
Confidence 3334445556779999999997666655444433332 2499999999998643 2222211 11
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+..+..++.++.... .++.+|++.+.+++++
T Consensus 76 ~~~~~~~vi~vSa~~~------~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 76 FEEQGIKALAINAKKG------QGVKKILKAAKKLLKE 107 (287)
T ss_pred HHHcCCeEEEEECCCc------ccHHHHHHHHHHHHHH
Confidence 1222333444554432 6788888888877654
No 401
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=5.8e-05 Score=64.56 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=69.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC-------------CcccccCC----CCCcceeeEEEEE-E---------------e
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR-------------RAFKSKAG----SSGVTKTCEMQRT-M---------------L 65 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~-------------~~~~~~~~----~~~~T~~~~~~~~-~---------------~ 65 (259)
+-.|+++|--|+||||.+-.+... +.|..+.. ....-..+.++.. . .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 458999999999999998776411 11111100 0011122222221 0 0
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
.++..++|+||.|-+ .....+.+++...... -.+|-+|||+|++-+... ......+++..+ -.-+++|
T Consensus 181 ke~fdvIIvDTSGRh---~qe~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQaa--e~Qa~aFk~~vd-----vg~vIlT 248 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRH---KQEASLFEEMKQVSKA--IKPDEIIFVMDASIGQAA--EAQARAFKETVD-----VGAVILT 248 (483)
T ss_pred hcCCcEEEEeCCCch---hhhHHHHHHHHHHHhh--cCCCeEEEEEeccccHhH--HHHHHHHHHhhc-----cceEEEE
Confidence 224479999999966 3345566666655433 367999999999733222 223444444333 4458889
Q ss_pred CCCCCC
Q 024985 146 GGNELE 151 (259)
Q Consensus 146 k~D~~~ 151 (259)
|.|.-.
T Consensus 249 KlDGha 254 (483)
T KOG0780|consen 249 KLDGHA 254 (483)
T ss_pred ecccCC
Confidence 999753
No 402
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.80 E-value=0.00039 Score=62.35 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
....|+|+|..++||||||.+|.+.+.
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~ 50 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED 50 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC
Confidence 457999999999999999999987654
No 403
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.77 E-value=4.6e-05 Score=57.25 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=37.4
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
....+|++++|+|+..+.+..+..+.+++.... ..+|+++|+||+|+.++
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~---~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEVD---PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc---CCCcEEEEEechhcCCH
Confidence 344569999999998777767667777776531 12499999999998754
No 404
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.75 E-value=0.00032 Score=55.42 Aligned_cols=95 Identities=14% Similarity=-0.029 Sum_probs=54.8
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
+...+......+|++++|+|+++........+ ... . ...|+++|+||+|+... ..... .+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l---~~~-~---~~~~~ilV~NK~Dl~~~--~~~~~--------~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL---RLF-G---GNNPVILVGNKIDLLPK--DKNLV--------RIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH---HHh-c---CCCcEEEEEEchhcCCC--CCCHH--------HHHHH
Confidence 45666677888999999999984432222222 111 1 12499999999998754 11111 11111
Q ss_pred H-----HHcC---CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 173 L-----QLCE---NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 173 ~-----~~~~---~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
. +..+ ..++.+++.. ..++.+|++.|.+.++.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~------~~gi~eL~~~l~~~l~~ 126 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKK------GWGVEELINAIKKLAKK 126 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCC------CCCHHHHHHHHHHHhhc
Confidence 1 1111 1233444332 27899999999888753
No 405
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.74 E-value=0.0018 Score=54.47 Aligned_cols=28 Identities=18% Similarity=0.493 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
...+|+++|..|+||||||..|-|.+-.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~ 78 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETV 78 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccccc
Confidence 3578999999999999999999988743
No 406
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.73 E-value=0.00014 Score=45.03 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=28.3
Q ss_pred ccEEEEEEeCC--CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 104 IHAVLLVFSVR--NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 104 ~~~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
.++++|++|++ .+.+-++ ..+++.++..|+. +|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 47999999997 4555544 6778888888852 59999999998
No 407
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.71 E-value=3e-05 Score=59.88 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
.-.++++|++|+|||||+|.|.|...+.++
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 458999999999999999999998765443
No 408
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=4.4e-05 Score=61.84 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
.-.|.++|+||||||||+|.|.|-..+..+
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 346899999999999999999998764444
No 409
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.65 E-value=0.00026 Score=54.08 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=46.4
Q ss_pred cEEEEEEeCCCCCCHhHHHHH-HHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEE
Q 024985 105 HAVLLVFSVRNRFSEEGGAAI-HSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLF 183 (259)
Q Consensus 105 ~~il~v~d~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (259)
|++|+|+|+..+.+..+..+. ..+.. . .+|+++|+||+|+.+. ..+.+++ ..+.+.....++..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-~----~~p~IiVlNK~Dl~~~--~~~~~~~--------~~~~~~~~~~ii~v 65 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-K----GKKLILVLNKADLVPK--EVLRKWL--------AYLRHSYPTIPFKI 65 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-C----CCCEEEEEechhcCCH--HHHHHHH--------HHHHhhCCceEEEE
Confidence 689999999855554443333 12222 2 2499999999998754 2222221 12222223333444
Q ss_pred eCCCcccccchhHHHHHHHHHHHHH
Q 024985 184 DNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 184 ~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
++.. + .++.+|++.+.+..
T Consensus 66 Sa~~--~----~gi~~L~~~i~~~~ 84 (155)
T cd01849 66 SATN--G----QGIEKKESAFTKQT 84 (155)
T ss_pred eccC--C----cChhhHHHHHHHHh
Confidence 4432 2 57888888776543
No 410
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.62 E-value=0.00011 Score=58.77 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=39.9
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
..+.++|+||--+.-.......+ +.+.+... .-.-+++-++|.. ...+.--..++-.+.-++.-+. |-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~-I~~~Lek~-~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel--phVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNK-IFRKLEKL-DYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL--PHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHH-HHHHHHHc-CceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc--cchhhhhH
Confidence 36899999996533222222332 33333221 1112344555543 1111112223334444444443 88889999
Q ss_pred CCCCCC
Q 024985 147 GNELED 152 (259)
Q Consensus 147 ~D~~~~ 152 (259)
+|++..
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 999865
No 411
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.61 E-value=0.0024 Score=54.67 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=42.0
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKC-IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
....+|.|-|+.++.. +...+... ........|.++-|+|+. .+.......-+.+.. +...-=+||+||.
T Consensus 85 ~D~ivIEtTGlA~P~p----v~~t~~~~~~l~~~~~ld~vvtvVDa~-~~~~~~~~~~~~~~~----Qia~AD~ivlNK~ 155 (323)
T COG0523 85 PDRLVIETTGLADPAP----VIQTFLTDPELADGVRLDGVVTVVDAA-HFLEGLDAIAELAED----QLAFADVIVLNKT 155 (323)
T ss_pred CCEEEEeCCCCCCCHH----HHHHhccccccccceeeceEEEEEeHH-HhhhhHHHHHHHHHH----HHHhCcEEEEecc
Confidence 3588999999976521 22222211 111233568899999998 433322212222222 2222457899999
Q ss_pred CCCCC
Q 024985 148 NELED 152 (259)
Q Consensus 148 D~~~~ 152 (259)
|++++
T Consensus 156 Dlv~~ 160 (323)
T COG0523 156 DLVDA 160 (323)
T ss_pred cCCCH
Confidence 99976
No 412
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.61 E-value=0.00016 Score=57.94 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=28.8
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
..++|.+|.|+|++-+ +-..-+-++.|.+-.| .+++.+|+||+|..
T Consensus 153 ~~~vD~vivVvDpS~~-sl~taeri~~L~~elg---~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYK-SLRTAERIKELAEELG---IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC---CceEEEEEeeccch
Confidence 3578999999998721 1112222333333334 36999999999955
No 413
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.00097 Score=49.93 Aligned_cols=100 Identities=18% Similarity=0.119 Sum_probs=55.1
Q ss_pred EEEcCCCCcHHHHHHHHhCC------CcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 23 VLVGRTGNGKSATGNSILGR------RAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 23 ~l~G~~g~GKSslin~l~~~------~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
+.-|..|+|||++--.+... .....+....+.. . ...++++|||+..+. .....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~----------~-~yd~VIiD~p~~~~~---------~~~~~ 63 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN----------L-DYDYIIIDTGAGISD---------NVLDF 63 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC----------C-CCCEEEEECCCCCCH---------HHHHH
Confidence 45678899999997665421 1111111110000 0 146899999985421 11222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
+. .+|.+++|++.+ ..+-.+ ...++.+.+..+ ..++.+|+|+++..
T Consensus 64 l~----~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~~~ 110 (139)
T cd02038 64 FL----AADEVIVVTTPE-PTSITDAYALIKKLAKQLR---VLNFRVVVNRAESP 110 (139)
T ss_pred HH----hCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCCH
Confidence 22 348999999887 333222 445566654322 23788999998743
No 414
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.0055 Score=46.53 Aligned_cols=118 Identities=13% Similarity=0.208 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC---CcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCC-C---------CCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR---RAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTP-G---------LFDS 82 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~---~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTP-G---------~~~~ 82 (259)
...+|++-|+||+||||++..|.+. ..+..+. -.|..+. .++ ..|.++|+. | +...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG---f~t~EVR------~gGkR~GF~Ivdl~tg~~~~la~~~~~~~ 74 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG---FITPEVR------EGGKRIGFKIVDLATGEEGILARVGFSRP 74 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee---EEeeeee------cCCeEeeeEEEEccCCceEEEEEcCCCCc
Confidence 3468999999999999999887532 2111110 0111111 111 145566664 1 1111
Q ss_pred C-----CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 83 S-----ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 83 ~-----~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
+ ..-+.+.+....++..+...+|++ ++|-=.+.......+.+.+.+.++.+ +|++.++.+-+
T Consensus 75 rvGkY~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 75 RVGKYGVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred ccceEEeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 1 112234445556666666667765 45532244444466777777777653 38777776554
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.56 E-value=8.1e-05 Score=59.95 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.|+++|+||||||||+|.|-+-..+
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 347999999999999999999877753
No 416
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.56 E-value=0.001 Score=56.91 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+.+..+|.|.-|||||||+|.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567889999999999999999854
No 417
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=0.00034 Score=51.38 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 024985 22 LVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~ 41 (259)
|+|.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999973
No 418
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00052 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++++|++|+|||||++.|.|...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999999999999999998754
No 419
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.53 E-value=0.0014 Score=46.68 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=51.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 024985 24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDG 103 (259)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (259)
+-++.|+||||+.-.|...-....+ .. ..........+..++++|||+.... .....+. .
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~-----~~--~~l~d~d~~~~~D~IIiDtpp~~~~---------~~~~~l~----~ 64 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAG-----RR--VLLVDLDLQFGDDYVVVDLGRSLDE---------VSLAALD----Q 64 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCC-----Cc--EEEEECCCCCCCCEEEEeCCCCcCH---------HHHHHHH----H
Confidence 3467899999987666422210000 00 0111011112227899999986531 1122222 3
Q ss_pred ccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 104 IHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 104 ~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
+|.++++++.+ ..+.. -..+++.+.+. +.+...++.+|+|+
T Consensus 65 aD~vlvvv~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 65 ADRVFLVTQQD-LPSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred cCeEEEEecCC-hHHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 48999999887 33332 34555555553 32212367777775
No 420
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.51 E-value=0.00012 Score=54.79 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 024985 22 LVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~ 43 (259)
|+|+|++|+|||||++.|....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998763
No 421
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.50 E-value=0.0038 Score=48.41 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=37.8
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN 148 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D 148 (259)
.++|||||+.... .....+ ..+|.+|++++.+ ..+... ..+++.+... + .....+|+|+++
T Consensus 64 d~viiD~p~~~~~---------~~~~~l----~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~---~~~~~iv~N~~~ 125 (179)
T cd02036 64 DYILIDSPAGIER---------GFITAI----APADEALLVTTPE-ISSLRDADRVKGLLEAL-G---IKVVGVIVNRVR 125 (179)
T ss_pred CEEEEECCCCCcH---------HHHHHH----HhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-C---CceEEEEEeCCc
Confidence 7999999984421 112222 2448899999887 333322 3445555441 2 136778999988
Q ss_pred CCC
Q 024985 149 ELE 151 (259)
Q Consensus 149 ~~~ 151 (259)
...
T Consensus 126 ~~~ 128 (179)
T cd02036 126 PDM 128 (179)
T ss_pred ccc
Confidence 643
No 422
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.50 E-value=0.00015 Score=58.16 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 8 VDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 8 ~~~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+.|....+. ....|+|+|++|||||||++.|....
T Consensus 3 ~~~~~~~~~-~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 3 NPWLFNKPA-KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CccccCCCC-CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 456544433 45678889999999999999997543
No 423
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.50 E-value=0.0012 Score=59.35 Aligned_cols=121 Identities=18% Similarity=0.116 Sum_probs=67.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcce-eeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHH
Q 024985 13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTK-TCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVS 90 (259)
Q Consensus 13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~-~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~ 90 (259)
.....+...+.++|+.++|||.++++++|...-. +..+.+. ......+.. ....-+++-|.+-. +...
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~---~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~------ 488 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD---NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF------ 488 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhcccccc---ccccCCCCceeeeeeeeccccceEEEeecCcc-cccc------
Confidence 3444566889999999999999999999987633 1111111 111111111 12234555554432 1000
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+..-...+|++++++|.+++-+.. .+..+.+.+......|+++|.+|+|+.+.
T Consensus 489 ------l~~ke~~cDv~~~~YDsS~p~sf~---~~a~v~~~~~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 489 ------LTSKEAACDVACLVYDSSNPRSFE---YLAEVYNKYFDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred ------ccCccceeeeEEEecccCCchHHH---HHHHHHHHhhhccCCceEEEeeccccchh
Confidence 000012459999999988443333 33333332322344599999999997654
No 424
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00012 Score=58.10 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
..-.++++|+||||||||+..|-+-+.+.++
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G 57 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG 57 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence 3458999999999999999999887764443
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.48 E-value=0.0029 Score=47.69 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++++|++|+|||||++.|.|...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35789999999999999999998764
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.46 E-value=0.00013 Score=46.29 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
..+|.|++|+||||++.+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 427
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=7.2e-05 Score=57.96 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEe
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liD 75 (259)
...-++|.||||||||||++.|+....+.. +-..+|+.+... ..+|..+.|++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~--SVS~TTR~pR~g---Ev~G~dY~Fvs 55 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRF--SVSATTRKPRPG---EVDGVDYFFVT 55 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEE--EEEeccCCCCCC---CcCCceeEeCC
Confidence 345688999999999999999997773222 212233333322 24566666665
No 428
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00016 Score=57.00 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...-|+|+|++|||||||++.|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45679999999999999999998764
No 429
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.41 E-value=0.00012 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|+|||||++.|+|...+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCEEEEEccCCCccccceeeecccccc
Confidence 347999999999999999999988753
No 430
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0023 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFK 46 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~ 46 (259)
-+|++||+.|+|||||+..|+|.--+.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~ 640 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPN 640 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCC
Confidence 389999999999999999999876433
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.40 E-value=0.0012 Score=45.50 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=41.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985 22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK 101 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (259)
+++.|..|+||||+...+...-. . .+ . .... .+ .+.++|+||..+... .. .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~---~---~g-~-~v~~-----~~--d~iivD~~~~~~~~~-------~~---~~~~~ 56 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA---K---RG-K-RVLL-----ID--DYVLIDTPPGLGLLV-------LL---CLLAL 56 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---H---CC-C-eEEE-----EC--CEEEEeCCCCccchh-------hh---hhhhh
Confidence 67889999999999988863321 0 00 0 0111 11 688999999654211 00 11123
Q ss_pred CCccEEEEEEeCC
Q 024985 102 DGIHAVLLVFSVR 114 (259)
Q Consensus 102 ~~~~~il~v~d~~ 114 (259)
..+|.++++++..
T Consensus 57 ~~~~~vi~v~~~~ 69 (99)
T cd01983 57 LAADLVIIVTTPE 69 (99)
T ss_pred hhCCEEEEecCCc
Confidence 3558888998876
No 432
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.00014 Score=62.07 Aligned_cols=29 Identities=34% Similarity=0.369 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
-.++|+||||||||||++.|.|-+.+.++
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 46888999999999999999998764443
No 433
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00015 Score=60.19 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc--ccccCCCCCccee----------------------------------eEEE
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA--FKSKAGSSGVTKT----------------------------------CEMQ 61 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~--~~~~~~~~~~T~~----------------------------------~~~~ 61 (259)
...+|.-+|....||||+..++.|-.- |..... ...|.. |...
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELE-RNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELE-RNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhh-cceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 468999999999999999999976431 111100 001111 0000
Q ss_pred EEE--eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccC
Q 024985 62 RTM--LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFD 138 (259)
Q Consensus 62 ~~~--~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~ 138 (259)
... ..--+.+.|+|+||.. -+...+.....-.|+.++++.++ ....++..+-|..+.=+ ..+
T Consensus 116 g~~~~~klvRHVSfVDCPGHD-----------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM----~Lk 180 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM----KLK 180 (466)
T ss_pred CCCCceEEEEEEEeccCCchH-----------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh----hhc
Confidence 000 0001358999999943 22222222222337888888776 23333433333332211 114
Q ss_pred eEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 139 YMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 139 ~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
.++++-||+|++.+. +.++++. .+..++... +.++...++ +.+-++.-+.++|-+.++..-+
T Consensus 181 hiiilQNKiDli~e~-~A~eq~e------~I~kFi~~t~ae~aPiiPisA------QlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 181 HIIILQNKIDLIKES-QALEQHE------QIQKFIQGTVAEGAPIIPISA------QLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred eEEEEechhhhhhHH-HHHHHHH------HHHHHHhccccCCCceeeehh------hhccChHHHHHHHHhcCCCCcc
Confidence 899999999998652 2233221 222332221 113333333 3346788888888887765433
No 434
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.36 E-value=7.3e-05 Score=62.95 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
....|+|+|++||||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988643
No 435
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.35 E-value=0.0014 Score=56.62 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.+..+|.|.-|||||||+|.++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 467888999999999999999753
No 436
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.0035 Score=48.73 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++++|++|+|||||++.|.|...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999998764
No 437
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.33 E-value=0.00034 Score=59.74 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHH--HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKC--IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
-+.|||..|.. .+.+. +-..-.-+|...+++-++.++-...++-|..... +. .|+++|+||+
T Consensus 220 viTFIDLAGHE-----------kYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa-L~----VPVfvVVTKI 283 (641)
T KOG0463|consen 220 VITFIDLAGHE-----------KYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA-LH----VPVFVVVTKI 283 (641)
T ss_pred eEEEEeccchh-----------hhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhh-hc----CcEEEEEEee
Confidence 48899999943 12111 1122334577788887776655555555554333 23 3999999999
Q ss_pred CCCCC
Q 024985 148 NELED 152 (259)
Q Consensus 148 D~~~~ 152 (259)
|..+.
T Consensus 284 DMCPA 288 (641)
T KOG0463|consen 284 DMCPA 288 (641)
T ss_pred ccCcH
Confidence 97654
No 438
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.32 E-value=0.0014 Score=57.11 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=54.7
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
.+...+......++++++|+|+.+.... +...+.+..+ .+|+++|+||+|+++.. ...+. +. ..++.
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s----~~~~l~~~~~---~~piilV~NK~DLl~k~-~~~~~-~~----~~l~~ 118 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGS----LIPELKRFVG---GNPVLLVGNKIDLLPKS-VNLSK-IK----EWMKK 118 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCC----ccHHHHHHhC---CCCEEEEEEchhhCCCC-CCHHH-HH----HHHHH
Confidence 4455555566788999999998633222 2333444333 24999999999987541 11111 11 12223
Q ss_pred HHHHcCC---cEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 172 ILQLCEN---RRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 172 ~~~~~~~---~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
..+..+. .++..++. . ..++.+|++.+.+.
T Consensus 119 ~~k~~g~~~~~i~~vSAk--~----g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 119 RAKELGLKPVDIILVSAK--K----GNGIDELLDKIKKA 151 (360)
T ss_pred HHHHcCCCcCcEEEecCC--C----CCCHHHHHHHHHHH
Confidence 3444343 23333332 2 26899999988765
No 439
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.31 E-value=0.00026 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++++|++|+|||||++.|.|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 445899999999999999999998764
No 440
>PRK12289 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.00095 Score=57.83 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=29.6
Q ss_pred CCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 101 KDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
...+|.+++|+|+.++ +... .+-+++..... ...|+++|+||+|+...
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~--~LdR~L~~a~~--~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPW--QLSRFLVKAES--TGLEIVLCLNKADLVSP 135 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHH--HHHHHHHHHHH--CCCCEEEEEEchhcCCh
Confidence 4567999999999733 2332 12222222111 12499999999999754
No 441
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.29 E-value=0.0013 Score=60.04 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
+.-+|.|||+.|+|||||++.|.|...+..+
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G 58 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEPDSG 58 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcCCCC
Confidence 4569999999999999999999998864443
No 442
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.28 E-value=0.00022 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 443
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00046 Score=61.07 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=70.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEE---------------eeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTM---------------LKD 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~---------------~~~ 67 (259)
.+.+++.++.....|||||..+|.-.....+... ..+.|......... ..+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 3567889999999999999999875543222111 01222222111100 011
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+--+++||.||.-+.+. ++.. +.+-.|+.|.|+|.-++.+-+....|.......- .-++|+||+
T Consensus 97 ~FLiNLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERI-----kPvlv~NK~ 160 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI-----KPVLVMNKM 160 (842)
T ss_pred ceeEEeccCCCcccchh-------hhhh----eeEeccCcEEEEEccCceEechHHHHHHHHHhhc-----cceEEeehh
Confidence 22589999999876432 3332 3344488899999776877777666664322122 335788999
Q ss_pred CCC
Q 024985 148 NEL 150 (259)
Q Consensus 148 D~~ 150 (259)
|..
T Consensus 161 DRA 163 (842)
T KOG0469|consen 161 DRA 163 (842)
T ss_pred hHH
Confidence 974
No 444
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.22 E-value=0.0045 Score=43.63 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=38.9
Q ss_pred EEEEc-CCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 22 LVLVG-RTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 22 I~l~G-~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
|++.| ..|+||||+.-.+...-. . .+ . ..-.. .......++++|||+.... .....+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~--~----~~-~-~vl~~--d~d~~~d~viiD~p~~~~~---------~~~~~l~-- 60 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA--R----RG-K-RVLLI--DLDPQYDYIIIDTPPSLGL---------LTRNALA-- 60 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH--h----CC-C-cEEEE--eCCCCCCEEEEeCcCCCCH---------HHHHHHH--
Confidence 56666 679999998866642221 0 00 0 01111 1111256899999996531 1222222
Q ss_pred CCCccEEEEEEeCC
Q 024985 101 KDGIHAVLLVFSVR 114 (259)
Q Consensus 101 ~~~~~~il~v~d~~ 114 (259)
.+|.++++++.+
T Consensus 61 --~ad~viv~~~~~ 72 (104)
T cd02042 61 --AADLVLIPVQPS 72 (104)
T ss_pred --HCCEEEEeccCC
Confidence 248999999876
No 445
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.22 E-value=0.00037 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|+|...
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999998764
No 446
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.00039 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999998764
No 447
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.18 E-value=0.0033 Score=60.13 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...++|.|+.|+|||||++.+.+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 368999999999999999999876
No 448
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.00031 Score=54.71 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKS 47 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~ 47 (259)
-.+.++|+||||||||++.|++...+..
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~ 56 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTR 56 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCC
Confidence 4688999999999999999998876443
No 449
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.18 E-value=0.0033 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
....+++.|++|+|||++++.+.+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998554
No 450
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.17 E-value=0.00043 Score=55.84 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++++|++|+|||||++.|.|...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345799999999999999999998754
No 451
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.16 E-value=0.00037 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+.-.++|+|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 345899999999999999999974
No 452
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.16 E-value=0.00048 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998764
No 453
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.16 E-value=0.00044 Score=49.08 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
...++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4579999999999999999986
No 454
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.16 E-value=0.00046 Score=55.54 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999998754
No 455
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.15 E-value=0.00034 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...++++|++|||||||+++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998754
No 456
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.15 E-value=0.00046 Score=55.75 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|+|...
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 45799999999999999999998764
No 457
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.15 E-value=0.00046 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999998764
No 458
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00043 Score=55.64 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.++++|++|+|||||++.|.|...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998754
No 459
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00049 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999999998754
No 460
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.13 E-value=0.00052 Score=54.22 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34799999999999999999998764
No 461
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.13 E-value=0.0005 Score=55.43 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|+|...
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 35799999999999999999998764
No 462
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.13 E-value=0.00052 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345799999999999999999998764
No 463
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00053 Score=55.18 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999998754
No 464
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.11 E-value=0.00052 Score=55.21 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345789999999999999999998754
No 465
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.11 E-value=0.00055 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44799999999999999999998764
No 466
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00051 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35799999999999999999998764
No 467
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.10 E-value=0.00058 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345799999999999999999998764
No 468
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00057 Score=54.88 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999999998754
No 469
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.10 E-value=0.00058 Score=55.27 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998764
No 470
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.10 E-value=0.00057 Score=54.99 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 345799999999999999999998764
No 471
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.09 E-value=0.00059 Score=54.39 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999998764
No 472
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.09 E-value=0.00056 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45799999999999999999998764
No 473
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00053 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
-.++++|+||+|||||+|.+.|.-.+
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 46888999999999999999987653
No 474
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0047 Score=52.42 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.-..|.++|.-|+|||||++.|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 45689999999999999999998764
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.07 E-value=0.00046 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.|+|+|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997654
No 476
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00062 Score=56.48 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|+|...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999998764
No 477
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.07 E-value=0.0006 Score=54.51 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999998754
No 478
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0005 Score=59.26 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEeeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTMLKD 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~ 67 (259)
....+++++|...+||||+-..|+....+... ....+-|.......++ ..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE-te 155 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE-TE 155 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE-ec
Confidence 45689999999999999998887643211110 0011344444443333 45
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-----CCCCHh-HHHHHHHHHHHhcccccCeEE
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-----NRFSEE-GGAAIHSLESLFGKKVFDYMI 141 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-----~~~~~~-~~~~l~~l~~~~~~~~~~~~i 141 (259)
.+.+.+.|+||.-. +...+.....++|+-++|+.+. .++... ..+--..|.+..|. +..|
T Consensus 156 ~~~ftiLDApGHk~-----------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lV 221 (501)
T KOG0459|consen 156 NKRFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLI 221 (501)
T ss_pred ceeEEeeccCcccc-----------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEE
Confidence 67899999999543 2222233455778888888874 122211 11122233443443 4899
Q ss_pred EEEeCCCCCC
Q 024985 142 VVFTGGNELE 151 (259)
Q Consensus 142 vV~nk~D~~~ 151 (259)
+++||+|...
T Consensus 222 v~vNKMddPt 231 (501)
T KOG0459|consen 222 VLINKMDDPT 231 (501)
T ss_pred EEEEeccCCc
Confidence 9999999764
No 479
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.07 E-value=0.00065 Score=53.93 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999764
No 480
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.06 E-value=0.00063 Score=55.26 Aligned_cols=26 Identities=46% Similarity=0.631 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999998764
No 481
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.06 E-value=0.00062 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 345899999999999999999998764
No 482
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00065 Score=55.44 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998764
No 483
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.06 E-value=0.0007 Score=53.01 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998754
No 484
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.06 E-value=0.00068 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++++|++|+|||||++.|.|...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35799999999999999999999865
No 485
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.06 E-value=0.0039 Score=51.42 Aligned_cols=48 Identities=19% Similarity=0.052 Sum_probs=31.5
Q ss_pred cCCCccEEEEEEeCCCCC-CHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 100 AKDGIHAVLLVFSVRNRF-SEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.+..+|.+++|+|++++. +... ..++..+.. ...|+++|+||+|+.+.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDD 82 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCC
Confidence 466889999999998433 4332 233333322 12499999999998754
No 486
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.05 E-value=0.00067 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999998764
No 487
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.05 E-value=0.00057 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+.-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34579999999999999999999876
No 488
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.05 E-value=0.021 Score=52.19 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
...++|.||+|+||||++..|...-.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678899999999999999976543
No 489
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.05 E-value=0.00072 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999764
No 490
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.04 E-value=0.00071 Score=54.24 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++++|++|+|||||++.|.|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999764
No 491
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.04 E-value=0.0007 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999999998764
No 492
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.04 E-value=0.00059 Score=62.66 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFK 46 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~ 46 (259)
+.-+++++|++|+|||||++.|+|...+.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45689999999999999999999887533
No 493
>PRK07261 topology modulation protein; Provisional
Probab=97.03 E-value=0.00052 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
+|+++|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998643
No 494
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.03 E-value=0.00068 Score=55.42 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45799999999999999999998754
No 495
>PRK10908 cell division protein FtsE; Provisional
Probab=97.03 E-value=0.00072 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998764
No 496
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.03 E-value=0.00055 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.....|++.|++|||||||.+.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999754
No 497
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.03 E-value=0.00074 Score=53.87 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999998764
No 498
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00069 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|.|...
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34799999999999999999998754
No 499
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.03 E-value=0.00072 Score=56.09 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFK 46 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~ 46 (259)
+.-.++|+|++|+|||||++.|+|...+.
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 45689999999999999999999987533
No 500
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00074 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|+|||||++.|.|...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999764
Done!