Query 024985
Match_columns 259
No_of_seqs 217 out of 2303
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 2.7E-32 9.2E-37 224.2 20.1 207 15-227 17-225 (247)
2 3lxx_A GTPase IMAP family memb 100.0 2.8E-32 9.5E-37 223.0 19.9 209 17-231 27-235 (239)
3 2xtp_A GTPase IMAP family memb 100.0 1.4E-27 4.7E-32 197.5 22.8 205 16-226 19-224 (260)
4 4dhe_A Probable GTP-binding pr 99.9 4.2E-22 1.4E-26 160.4 16.7 179 17-211 27-212 (223)
5 3iev_A GTP-binding protein ERA 99.9 3.8E-22 1.3E-26 168.7 14.7 177 14-211 5-183 (308)
6 3def_A T7I23.11 protein; chlor 99.9 1.7E-21 5.7E-26 161.2 15.7 192 17-213 34-246 (262)
7 1svi_A GTP-binding protein YSX 99.9 9.4E-21 3.2E-25 149.2 18.8 172 17-209 21-194 (195)
8 3pqc_A Probable GTP-binding pr 99.9 2.7E-20 9.4E-25 146.2 20.0 172 17-210 21-194 (195)
9 1h65_A Chloroplast outer envel 99.9 1.2E-20 4.1E-25 156.7 18.3 203 17-224 37-260 (270)
10 1wf3_A GTP-binding protein; GT 99.9 8.8E-21 3E-25 159.7 17.7 167 18-210 6-173 (301)
11 2qu8_A Putative nucleolar GTP- 99.9 2.9E-20 1E-24 150.4 18.4 184 12-210 22-205 (228)
12 2lkc_A Translation initiation 99.8 1.5E-20 5.3E-25 145.6 12.5 168 16-211 5-172 (178)
13 2dyk_A GTP-binding protein; GT 99.8 7.7E-20 2.6E-24 139.3 12.8 158 20-208 2-160 (161)
14 1z08_A RAS-related protein RAB 99.8 2.2E-19 7.6E-24 137.9 15.5 162 17-209 4-168 (170)
15 4bas_A ADP-ribosylation factor 99.8 6.3E-19 2.2E-23 139.0 18.0 174 14-213 12-192 (199)
16 2gf9_A RAS-related protein RAB 99.8 1.2E-19 4.1E-24 142.3 13.6 171 10-210 13-185 (189)
17 3iby_A Ferrous iron transport 99.8 4.8E-20 1.6E-24 151.7 11.6 161 20-207 2-164 (256)
18 3t5d_A Septin-7; GTP-binding p 99.8 4.6E-20 1.6E-24 153.5 11.4 173 18-209 7-203 (274)
19 3tkl_A RAS-related protein RAB 99.8 5.5E-19 1.9E-23 139.0 16.7 165 17-212 14-181 (196)
20 3tw8_B RAS-related protein RAB 99.8 2.3E-19 7.7E-24 139.2 14.3 163 16-210 6-171 (181)
21 1z0f_A RAB14, member RAS oncog 99.8 1.3E-19 4.5E-24 140.3 12.3 162 17-209 13-177 (179)
22 1zbd_A Rabphilin-3A; G protein 99.8 5.7E-19 1.9E-23 140.0 16.3 162 18-210 7-171 (203)
23 1z0j_A RAB-22, RAS-related pro 99.8 8.9E-20 3E-24 140.0 11.2 162 18-208 5-167 (170)
24 1ksh_A ARF-like protein 2; sma 99.8 1.4E-18 4.9E-23 135.6 18.3 161 17-211 16-181 (186)
25 2gj8_A MNME, tRNA modification 99.8 2.2E-19 7.4E-24 139.0 13.1 163 18-209 3-165 (172)
26 2bcg_Y Protein YP2, GTP-bindin 99.8 4.1E-19 1.4E-23 141.2 15.0 164 17-211 6-172 (206)
27 3bc1_A RAS-related protein RAB 99.8 5.7E-19 1.9E-23 138.4 15.6 166 16-210 8-185 (195)
28 2bme_A RAB4A, RAS-related prot 99.8 1.2E-18 3.9E-23 136.0 17.0 163 17-210 8-173 (186)
29 1ek0_A Protein (GTP-binding pr 99.8 3E-20 1E-24 142.6 7.8 162 19-208 3-167 (170)
30 1upt_A ARL1, ADP-ribosylation 99.8 9.6E-19 3.3E-23 134.5 16.3 161 16-210 4-169 (171)
31 4dcu_A GTP-binding protein ENG 99.8 1.5E-19 5.1E-24 160.7 13.2 189 17-226 193-385 (456)
32 1r2q_A RAS-related protein RAB 99.8 1.2E-19 4.1E-24 139.2 10.7 162 18-208 5-167 (170)
33 2efe_B Small GTP-binding prote 99.8 3.5E-19 1.2E-23 138.3 13.5 164 17-209 10-174 (181)
34 3i8s_A Ferrous iron transport 99.8 3.3E-19 1.1E-23 148.3 14.0 178 19-223 3-184 (274)
35 2hjg_A GTP-binding protein ENG 99.8 1E-19 3.5E-24 160.9 11.5 190 17-226 173-365 (436)
36 1ky3_A GTP-binding protein YPT 99.8 3.4E-19 1.2E-23 138.3 13.2 168 16-210 5-178 (182)
37 2g6b_A RAS-related protein RAB 99.8 1.8E-18 6.1E-23 134.1 17.3 164 17-210 8-174 (180)
38 2fg5_A RAB-22B, RAS-related pr 99.8 1.4E-19 4.8E-24 142.4 11.1 164 17-209 21-185 (192)
39 1mky_A Probable GTP-binding pr 99.8 1.7E-19 5.7E-24 159.7 12.5 165 20-211 2-167 (439)
40 1g16_A RAS-related protein SEC 99.8 1.9E-19 6.4E-24 138.2 11.1 162 18-211 2-166 (170)
41 3k53_A Ferrous iron transport 99.8 5.7E-19 2E-23 146.6 14.8 166 19-212 3-168 (271)
42 3a1s_A Iron(II) transport prot 99.8 3.4E-18 1.2E-22 140.9 19.2 164 18-210 4-167 (258)
43 3clv_A RAB5 protein, putative; 99.8 1.9E-18 6.4E-23 136.5 16.6 160 17-210 5-204 (208)
44 2fu5_C RAS-related protein RAB 99.8 5.8E-19 2E-23 137.5 13.5 163 17-210 6-171 (183)
45 2oil_A CATX-8, RAS-related pro 99.8 3.8E-19 1.3E-23 139.8 12.3 164 18-210 24-188 (193)
46 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.4E-18 4.6E-23 134.5 15.2 165 17-210 5-174 (177)
47 2nzj_A GTP-binding protein REM 99.8 3E-18 1E-22 132.2 17.1 165 17-210 2-169 (175)
48 3dz8_A RAS-related protein RAB 99.8 3.6E-19 1.2E-23 139.9 11.8 165 18-211 22-187 (191)
49 3cph_A RAS-related protein SEC 99.8 6.3E-19 2.1E-23 140.6 13.0 163 16-210 17-182 (213)
50 2il1_A RAB12; G-protein, GDP, 99.8 3.1E-19 1.1E-23 140.5 11.1 166 15-210 22-190 (192)
51 4dsu_A GTPase KRAS, isoform 2B 99.8 1E-18 3.4E-23 136.5 13.9 161 18-210 3-166 (189)
52 2ew1_A RAS-related protein RAB 99.8 1.6E-18 5.4E-23 137.7 14.9 171 9-210 13-189 (201)
53 3q72_A GTP-binding protein RAD 99.8 2E-18 7E-23 132.1 14.9 162 19-210 2-164 (166)
54 2p5s_A RAS and EF-hand domain 99.8 1.2E-19 4.1E-24 143.6 8.2 167 18-209 27-196 (199)
55 2hup_A RAS-related protein RAB 99.8 1.2E-18 4.1E-23 138.2 14.0 166 18-213 28-196 (201)
56 2h57_A ADP-ribosylation factor 99.8 1E-18 3.4E-23 137.2 13.1 163 17-209 19-186 (190)
57 2a5j_A RAS-related protein RAB 99.8 7.8E-19 2.7E-23 137.9 12.1 162 18-210 20-184 (191)
58 1vg8_A RAS-related protein RAB 99.8 9.9E-19 3.4E-23 138.8 12.8 165 16-210 5-175 (207)
59 1zj6_A ADP-ribosylation factor 99.8 2.5E-18 8.6E-23 134.5 15.0 162 17-211 14-179 (187)
60 1jwy_B Dynamin A GTPase domain 99.8 1.8E-18 6.2E-23 146.4 15.1 179 17-211 22-263 (315)
61 2o52_A RAS-related protein RAB 99.8 1.1E-18 3.9E-23 138.2 12.9 162 18-210 24-188 (200)
62 1kao_A RAP2A; GTP-binding prot 99.8 2.5E-18 8.4E-23 131.3 14.3 161 19-210 3-166 (167)
63 1zd9_A ADP-ribosylation factor 99.8 2.8E-18 9.6E-23 134.5 14.9 159 18-209 21-184 (188)
64 3oes_A GTPase rhebl1; small GT 99.8 1.9E-18 6.6E-23 136.9 14.1 165 17-212 22-189 (201)
65 3reg_A RHO-like small GTPase; 99.8 1.8E-18 6.2E-23 136.1 13.8 164 17-211 21-189 (194)
66 1u8z_A RAS-related protein RAL 99.8 2.3E-18 7.9E-23 131.6 14.0 161 18-209 3-166 (168)
67 3t5g_A GTP-binding protein RHE 99.8 2.1E-18 7.1E-23 134.1 13.8 165 18-213 5-172 (181)
68 3con_A GTPase NRAS; structural 99.8 6.6E-18 2.3E-22 132.3 16.7 162 18-211 20-184 (190)
69 2erx_A GTP-binding protein DI- 99.8 1.4E-18 4.8E-23 133.5 12.2 162 18-209 2-166 (172)
70 4djt_A GTP-binding nuclear pro 99.8 4E-19 1.4E-23 142.5 9.4 170 17-216 9-181 (218)
71 1z06_A RAS-related protein RAB 99.8 2.6E-18 8.8E-23 134.7 13.6 165 18-209 19-187 (189)
72 2yc2_C IFT27, small RAB-relate 99.8 8.4E-19 2.9E-23 139.2 10.8 162 17-209 18-191 (208)
73 1moz_A ARL1, ADP-ribosylation 99.8 2.3E-18 7.9E-23 134.0 13.0 160 17-210 16-180 (183)
74 1lnz_A SPO0B-associated GTP-bi 99.8 9.5E-20 3.3E-24 155.6 5.6 171 20-213 159-333 (342)
75 1r8s_A ADP-ribosylation factor 99.8 3.3E-18 1.1E-22 130.7 13.6 158 20-209 1-161 (164)
76 2y8e_A RAB-protein 6, GH09086P 99.8 6E-19 2.1E-23 136.5 9.6 161 18-209 13-176 (179)
77 1x3s_A RAS-related protein RAB 99.8 9.3E-19 3.2E-23 137.5 10.8 164 18-211 14-179 (195)
78 1z2a_A RAS-related protein RAB 99.8 7.4E-19 2.5E-23 134.6 10.0 161 17-209 3-166 (168)
79 2j1l_A RHO-related GTP-binding 99.8 4.8E-18 1.6E-22 136.0 15.1 170 18-212 33-211 (214)
80 3b1v_A Ferrous iron uptake tra 99.8 2.1E-18 7.3E-23 143.0 13.3 162 19-210 3-164 (272)
81 3gee_A MNME, tRNA modification 99.8 2.9E-18 1E-22 152.4 15.0 164 19-209 233-397 (476)
82 2a9k_A RAS-related protein RAL 99.8 3.8E-18 1.3E-22 132.9 13.8 163 17-210 16-181 (187)
83 2h17_A ADP-ribosylation factor 99.8 2E-18 6.8E-23 134.5 12.1 155 18-206 20-179 (181)
84 2gf0_A GTP-binding protein DI- 99.8 1.6E-18 5.6E-23 136.6 11.8 165 17-212 6-173 (199)
85 2wji_A Ferrous iron transport 99.8 3.1E-18 1.1E-22 131.5 13.0 161 19-208 3-163 (165)
86 2bov_A RAla, RAS-related prote 99.8 1.1E-17 3.7E-22 132.6 16.6 164 16-210 11-177 (206)
87 3t1o_A Gliding protein MGLA; G 99.8 3.7E-18 1.3E-22 134.2 13.6 167 17-211 12-193 (198)
88 2q3h_A RAS homolog gene family 99.8 3.5E-18 1.2E-22 135.2 13.5 173 14-210 15-195 (201)
89 2hjg_A GTP-binding protein ENG 99.8 2.7E-19 9.2E-24 158.2 7.7 161 20-210 4-165 (436)
90 1m2o_B GTP-binding protein SAR 99.8 3.9E-18 1.3E-22 134.1 13.5 166 17-206 21-188 (190)
91 1mky_A Probable GTP-binding pr 99.8 3E-18 1E-22 151.6 14.3 193 18-227 179-372 (439)
92 2fn4_A P23, RAS-related protei 99.8 3.4E-17 1.1E-21 126.8 18.6 166 15-211 5-173 (181)
93 1ega_A Protein (GTP-binding pr 99.8 1.1E-18 3.7E-23 147.0 10.9 168 18-210 7-175 (301)
94 4dkx_A RAS-related protein RAB 99.8 2.3E-18 7.9E-23 138.1 12.3 162 18-210 12-176 (216)
95 2hxs_A RAB-26, RAS-related pro 99.8 1.4E-18 4.7E-23 134.6 10.6 165 17-210 4-173 (178)
96 2ce2_X GTPase HRAS; signaling 99.8 2.9E-17 1E-21 125.1 17.9 159 19-209 3-164 (166)
97 2f7s_A C25KG, RAS-related prot 99.8 6.6E-18 2.2E-22 135.2 14.6 161 18-210 24-199 (217)
98 3kkq_A RAS-related protein M-R 99.8 4.4E-17 1.5E-21 126.7 18.9 167 14-210 13-182 (183)
99 1fzq_A ADP-ribosylation factor 99.8 1.8E-17 6.3E-22 129.1 16.6 159 17-209 14-177 (181)
100 2aka_B Dynamin-1; fusion prote 99.8 1.3E-18 4.5E-23 146.2 10.6 172 17-206 24-249 (299)
101 4dcu_A GTP-binding protein ENG 99.8 2.4E-19 8.3E-24 159.3 6.4 163 18-210 22-185 (456)
102 1f6b_A SAR1; gtpases, N-termin 99.8 4.8E-18 1.6E-22 134.4 13.2 168 17-206 23-195 (198)
103 3cbq_A GTP-binding protein REM 99.8 9.2E-18 3.1E-22 132.5 14.8 170 13-211 17-189 (195)
104 2gco_A H9, RHO-related GTP-bin 99.8 6.3E-18 2.1E-22 133.9 13.7 171 13-208 19-198 (201)
105 2fh5_B SR-beta, signal recogni 99.8 1.2E-17 4E-22 133.5 15.0 119 17-152 5-130 (214)
106 2wjg_A FEOB, ferrous iron tran 99.8 9.8E-18 3.4E-22 131.0 14.3 164 18-212 6-171 (188)
107 3llu_A RAS-related GTP-binding 99.8 1.9E-18 6.5E-23 136.4 10.1 178 14-207 15-194 (196)
108 3geh_A MNME, tRNA modification 99.8 1.4E-18 4.8E-23 153.9 10.3 162 19-211 224-385 (462)
109 3q85_A GTP-binding protein REM 99.8 8.6E-18 2.9E-22 128.9 13.4 163 19-210 2-167 (169)
110 1c1y_A RAS-related protein RAP 99.8 3.8E-17 1.3E-21 124.9 17.0 160 19-208 3-165 (167)
111 2atx_A Small GTP binding prote 99.8 1.3E-17 4.4E-22 131.1 14.6 168 17-209 16-192 (194)
112 2x77_A ADP-ribosylation factor 99.8 4.4E-18 1.5E-22 133.3 11.7 161 17-211 20-185 (189)
113 1mh1_A RAC1; GTP-binding, GTPa 99.8 6.9E-18 2.4E-22 131.4 12.2 168 18-210 4-180 (186)
114 2atv_A RERG, RAS-like estrogen 99.8 3.5E-17 1.2E-21 129.0 16.2 162 17-210 26-191 (196)
115 3cpj_B GTP-binding protein YPT 99.8 3.8E-18 1.3E-22 137.4 10.8 164 17-211 11-177 (223)
116 2cxx_A Probable GTP-binding pr 99.8 1.5E-17 5.3E-22 129.9 13.9 164 20-212 2-186 (190)
117 3gj0_A GTP-binding nuclear pro 99.8 8E-19 2.7E-23 141.1 6.3 165 15-211 11-176 (221)
118 2b6h_A ADP-ribosylation factor 99.8 9E-18 3.1E-22 132.2 12.2 160 17-208 27-189 (192)
119 1xzp_A Probable tRNA modificat 99.8 1.5E-17 5.3E-22 147.9 15.0 160 19-209 243-404 (482)
120 2e87_A Hypothetical protein PH 99.7 4.6E-17 1.6E-21 140.3 17.3 168 17-210 165-336 (357)
121 3ihw_A Centg3; RAS, centaurin, 99.7 1.8E-17 6E-22 129.6 13.4 161 16-211 17-181 (184)
122 2iwr_A Centaurin gamma 1; ANK 99.7 2.3E-17 8E-22 127.7 14.0 160 17-209 5-168 (178)
123 3qq5_A Small GTP-binding prote 99.7 1.4E-18 4.6E-23 152.2 7.5 168 15-211 30-197 (423)
124 3q3j_B RHO-related GTP-binding 99.7 3.1E-17 1.1E-21 131.4 14.2 170 17-210 25-203 (214)
125 3r7w_A Gtpase1, GTP-binding pr 99.7 2.2E-17 7.6E-22 139.4 13.7 171 19-205 3-176 (307)
126 2fv8_A H6, RHO-related GTP-bin 99.7 1.8E-17 6.2E-22 131.9 12.2 168 18-210 24-200 (207)
127 1wb1_A Translation elongation 99.7 4.8E-17 1.6E-21 145.2 16.0 165 18-210 18-189 (482)
128 1m7b_A RND3/RHOE small GTP-bin 99.7 4.8E-17 1.6E-21 126.9 13.8 169 17-209 5-182 (184)
129 3l0i_B RAS-related protein RAB 99.7 1.7E-19 5.7E-24 142.8 -0.3 162 17-209 31-195 (199)
130 2g3y_A GTP-binding protein GEM 99.7 2E-16 6.7E-21 126.4 17.3 164 18-210 36-203 (211)
131 4gzl_A RAS-related C3 botulinu 99.7 1.5E-17 5E-22 132.2 10.6 166 17-207 28-202 (204)
132 3o47_A ADP-ribosylation factor 99.7 2.5E-17 8.6E-22 140.3 12.5 158 18-209 164-326 (329)
133 1gwn_A RHO-related GTP-binding 99.7 6.9E-17 2.4E-21 128.5 14.1 172 14-209 23-203 (205)
134 2x2e_A Dynamin-1; nitration, h 99.7 1E-16 3.6E-21 137.9 15.5 130 18-152 30-212 (353)
135 3c5c_A RAS-like protein 12; GD 99.7 6.7E-17 2.3E-21 126.6 13.0 162 17-209 19-185 (187)
136 2qtf_A Protein HFLX, GTP-bindi 99.7 2.4E-16 8.2E-21 135.8 17.3 175 19-213 179-357 (364)
137 2j0v_A RAC-like GTP-binding pr 99.7 2.2E-17 7.6E-22 131.7 9.9 170 17-211 7-181 (212)
138 2j69_A Bacterial dynamin-like 99.7 2E-17 6.9E-22 153.6 10.6 120 18-152 68-245 (695)
139 3bwd_D RAC-like GTP-binding pr 99.7 1.4E-17 4.8E-22 129.3 7.9 167 17-208 6-179 (182)
140 1pui_A ENGB, probable GTP-bind 99.7 3.8E-16 1.3E-20 124.2 16.0 172 18-210 25-199 (210)
141 3lvq_E ARF-GAP with SH3 domain 99.7 5.7E-17 1.9E-21 145.7 12.4 163 18-217 321-491 (497)
142 3zvr_A Dynamin-1; hydrolase, D 99.7 3E-16 1E-20 145.3 17.2 125 18-152 50-232 (772)
143 3j2k_7 ERF3, eukaryotic polype 99.7 1.7E-16 5.8E-21 140.2 15.0 121 15-151 13-169 (439)
144 3p26_A Elongation factor 1 alp 99.7 9.2E-17 3.1E-21 143.7 13.4 152 18-190 32-222 (483)
145 3t34_A Dynamin-related protein 99.7 2.8E-16 9.4E-21 135.6 15.1 129 18-152 33-218 (360)
146 1s0u_A EIF-2-gamma, translatio 99.7 1.6E-15 5.5E-20 132.9 19.9 168 17-210 6-198 (408)
147 3izy_P Translation initiation 99.7 6.9E-19 2.4E-23 157.9 -1.7 162 18-209 3-167 (537)
148 3sjy_A Translation initiation 99.7 1.2E-16 4E-21 139.9 11.7 168 17-211 6-193 (403)
149 1zun_B Sulfate adenylate trans 99.7 2.8E-16 9.7E-21 138.7 13.9 153 17-190 22-208 (434)
150 2zej_A Dardarin, leucine-rich 99.7 1.6E-16 5.5E-21 124.0 11.0 166 19-210 2-178 (184)
151 1d2e_A Elongation factor TU (E 99.7 3.4E-16 1.2E-20 136.6 14.1 170 18-210 2-195 (397)
152 1kk1_A EIF2gamma; initiation o 99.7 5.5E-16 1.9E-20 135.9 15.2 168 17-210 8-200 (410)
153 3tr5_A RF-3, peptide chain rel 99.7 8.7E-17 3E-21 144.7 9.9 118 18-152 12-149 (528)
154 2c78_A Elongation factor TU-A; 99.7 9.2E-17 3.1E-21 140.7 9.6 119 16-151 8-142 (405)
155 2ged_A SR-beta, signal recogni 99.7 2.7E-16 9.1E-21 123.4 10.2 120 17-152 46-171 (193)
156 2elf_A Protein translation elo 99.7 3.8E-16 1.3E-20 134.9 11.7 153 21-210 23-180 (370)
157 1nrj_B SR-beta, signal recogni 99.7 3.7E-17 1.3E-21 130.9 4.9 122 16-152 9-135 (218)
158 3izq_1 HBS1P, elongation facto 99.7 4.4E-16 1.5E-20 142.5 12.3 153 17-190 165-356 (611)
159 2cjw_A GTP-binding protein GEM 99.7 7.1E-16 2.4E-20 121.3 11.3 163 18-209 5-171 (192)
160 2wkq_A NPH1-1, RAS-related C3 99.7 1.1E-15 3.8E-20 129.8 13.1 168 18-209 154-329 (332)
161 4a9a_A Ribosome-interacting GT 99.7 6E-16 2.1E-20 133.1 11.3 123 18-150 71-195 (376)
162 3th5_A RAS-related C3 botulinu 99.5 1.1E-17 3.7E-22 132.8 0.0 119 17-152 28-149 (204)
163 1zo1_I IF2, translation initia 99.6 1.4E-17 4.8E-22 148.3 0.5 161 18-206 3-163 (501)
164 2qag_A Septin-2, protein NEDD5 99.6 7.6E-16 2.6E-20 132.7 10.7 174 19-208 37-235 (361)
165 1g7s_A Translation initiation 99.6 1.1E-15 3.7E-20 139.3 12.1 116 18-151 4-136 (594)
166 2qpt_A EH domain-containing pr 99.6 2.4E-16 8.3E-21 142.6 7.7 135 16-159 62-238 (550)
167 2f9l_A RAB11B, member RAS onco 99.6 2.3E-15 7.8E-20 118.9 11.3 162 18-210 4-168 (199)
168 3cb4_D GTP-binding protein LEP 99.6 2.1E-15 7E-20 137.3 11.1 161 18-211 3-183 (599)
169 3avx_A Elongation factor TS, e 99.6 1.1E-14 3.6E-19 139.1 15.1 170 17-209 294-485 (1289)
170 2ywe_A GTP-binding protein LEP 99.6 2.9E-15 9.8E-20 136.2 10.7 164 17-211 4-185 (600)
171 1jny_A EF-1-alpha, elongation 99.6 3E-15 1E-19 132.1 10.5 119 17-151 4-158 (435)
172 1f60_A Elongation factor EEF1A 99.6 7.7E-16 2.6E-20 136.7 6.2 119 17-151 5-159 (458)
173 1oix_A RAS-related protein RAB 99.6 1.4E-14 4.7E-19 113.8 12.1 159 18-207 28-189 (191)
174 3dpu_A RAB family protein; roc 99.6 2.1E-14 7E-19 130.1 13.9 164 17-211 39-209 (535)
175 1wxq_A GTP-binding protein; st 99.6 1.5E-14 5.2E-19 125.9 12.1 91 20-116 1-114 (397)
176 1dar_A EF-G, elongation factor 99.6 4.8E-14 1.6E-18 130.9 15.5 120 16-152 9-144 (691)
177 3r7w_B Gtpase2, GTP-binding pr 99.6 2.6E-14 8.7E-19 120.4 12.1 164 21-206 1-170 (331)
178 3mca_A HBS1, elongation factor 99.6 2.2E-16 7.5E-21 144.1 -0.6 121 16-152 174-330 (592)
179 2qag_C Septin-7; cell cycle, c 99.6 3E-14 1E-18 124.4 12.8 155 18-185 30-208 (418)
180 1udx_A The GTP-binding protein 99.5 2.5E-14 8.6E-19 124.8 11.6 169 20-212 158-327 (416)
181 2h5e_A Peptide chain release f 99.5 2.5E-14 8.5E-19 128.8 11.1 119 17-152 11-149 (529)
182 2xex_A Elongation factor G; GT 99.5 6.6E-14 2.3E-18 130.0 13.6 119 17-152 8-142 (693)
183 1r5b_A Eukaryotic peptide chai 99.5 1.8E-14 6.2E-19 128.2 8.9 118 17-151 41-195 (467)
184 3vqt_A RF-3, peptide chain rel 99.5 1.6E-13 5.5E-18 124.0 13.5 118 18-152 30-167 (548)
185 2dy1_A Elongation factor G; tr 99.5 1.8E-13 6E-18 126.7 13.6 117 17-150 7-139 (665)
186 3p32_A Probable GTPase RV1496/ 99.5 1.9E-13 6.4E-18 117.6 12.8 110 67-210 170-284 (355)
187 2rdo_7 EF-G, elongation factor 99.5 3.3E-13 1.1E-17 125.4 15.3 119 17-152 8-149 (704)
188 3c5h_A Glucocorticoid receptor 99.5 2.1E-14 7.3E-19 117.9 5.4 89 103-208 162-253 (255)
189 2qag_B Septin-6, protein NEDD5 99.5 1.7E-13 5.7E-18 119.4 10.9 130 20-159 43-196 (427)
190 2www_A Methylmalonic aciduria 99.5 3.9E-13 1.3E-17 115.2 11.9 110 67-210 165-279 (349)
191 2p67_A LAO/AO transport system 99.5 1.4E-12 4.9E-17 111.4 14.7 109 67-209 147-260 (341)
192 2qnr_A Septin-2, protein NEDD5 99.4 1.3E-12 4.6E-17 109.7 12.2 173 18-210 17-214 (301)
193 3sop_A Neuronal-specific septi 99.4 6.6E-13 2.2E-17 109.8 8.8 149 20-181 3-177 (270)
194 1jal_A YCHF protein; nucleotid 99.4 5.7E-13 2E-17 114.0 6.3 89 20-115 3-108 (363)
195 4fn5_A EF-G 1, elongation fact 99.4 5.4E-12 1.8E-16 117.6 13.2 120 17-152 11-152 (709)
196 1n0u_A EF-2, elongation factor 99.4 2E-12 7E-17 122.4 10.1 118 17-150 17-163 (842)
197 3j25_A Tetracycline resistance 99.3 8.4E-13 2.9E-17 121.6 6.2 117 19-152 2-134 (638)
198 2dby_A GTP-binding protein; GD 99.3 3.9E-12 1.3E-16 109.4 8.5 90 20-115 2-111 (368)
199 3h2y_A GTPase family protein; 99.3 1.1E-13 3.9E-18 119.3 -1.7 124 19-152 160-288 (368)
200 1yrb_A ATP(GTP)binding protein 99.3 7.1E-12 2.4E-16 102.9 9.0 182 18-211 13-258 (262)
201 3ec1_A YQEH GTPase; atnos1, at 99.3 1.1E-13 3.9E-18 119.4 -2.8 123 19-152 162-289 (369)
202 2qm8_A GTPase/ATPase; G protei 99.2 2.7E-10 9.4E-15 97.0 16.5 24 18-41 54-77 (337)
203 2wsm_A Hydrogenase expression/ 99.2 1.2E-11 4.1E-16 98.9 7.1 155 18-209 29-213 (221)
204 1tq4_A IIGP1, interferon-induc 99.2 2.5E-10 8.4E-15 99.4 14.0 172 19-212 69-255 (413)
205 2j37_W Signal recognition part 99.2 4.4E-10 1.5E-14 100.2 16.0 123 17-152 99-255 (504)
206 2ohf_A Protein OLA1, GTP-bindi 99.2 2.1E-11 7.2E-16 105.3 7.2 92 17-114 20-127 (396)
207 1f5n_A Interferon-induced guan 99.2 1.1E-10 3.6E-15 105.9 10.2 109 16-130 35-147 (592)
208 3dm5_A SRP54, signal recogniti 99.1 4.6E-09 1.6E-13 92.0 16.3 144 18-186 99-275 (443)
209 3ohm_A Guanine nucleotide-bind 99.1 2.1E-09 7.3E-14 90.7 13.0 131 66-211 164-319 (327)
210 1puj_A YLQF, conserved hypothe 99.1 3.4E-10 1.2E-14 94.0 7.8 66 17-87 118-183 (282)
211 3szr_A Interferon-induced GTP- 99.0 1.2E-09 4.2E-14 100.0 11.6 80 69-152 147-229 (608)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 4.5E-10 1.5E-14 97.1 8.0 92 17-114 18-126 (392)
213 1cip_A Protein (guanine nucleo 99.0 2.6E-09 8.8E-14 91.4 12.4 131 66-211 190-345 (353)
214 2hf9_A Probable hydrogenase ni 99.0 1E-09 3.5E-14 87.9 7.7 25 18-42 37-61 (226)
215 4fid_A G protein alpha subunit 98.9 3.2E-08 1.1E-12 83.8 15.1 75 66-151 158-242 (340)
216 2v3c_C SRP54, signal recogniti 98.9 7E-09 2.4E-13 91.0 9.9 122 18-151 98-252 (432)
217 3cnl_A YLQF, putative uncharac 98.8 2.6E-09 9E-14 87.7 5.3 60 20-84 100-159 (262)
218 3kl4_A SRP54, signal recogniti 98.8 2.4E-08 8.2E-13 87.3 11.6 124 18-151 96-252 (433)
219 3q5d_A Atlastin-1; G protein, 98.7 4.5E-08 1.5E-12 85.9 9.4 107 17-130 65-195 (447)
220 1rj9_A FTSY, signal recognitio 98.7 9.9E-07 3.4E-11 73.8 15.7 146 18-186 101-283 (304)
221 2yhs_A FTSY, cell division pro 98.6 1E-06 3.4E-11 78.0 14.7 146 18-186 292-474 (503)
222 3e70_C DPA, signal recognition 98.6 1.6E-06 5.5E-11 73.3 15.4 145 17-186 127-304 (328)
223 1j8m_F SRP54, signal recogniti 98.6 8.8E-07 3E-11 73.9 12.5 123 19-151 98-253 (297)
224 2xxa_A Signal recognition part 98.5 2E-06 7E-11 75.4 14.9 123 17-151 98-254 (433)
225 1zcb_A G alpha I/13; GTP-bindi 98.5 6.5E-07 2.2E-11 76.7 10.1 130 66-210 198-353 (362)
226 1vma_A Cell division protein F 98.4 1.6E-05 5.5E-10 66.5 15.3 147 17-186 102-285 (306)
227 3b9q_A Chloroplast SRP recepto 98.3 1.3E-05 4.4E-10 67.0 13.3 146 18-186 99-282 (302)
228 4ido_A Atlastin-1; GTPase, GTP 98.3 7.4E-06 2.5E-10 71.7 11.9 109 16-130 64-195 (457)
229 2ffh_A Protein (FFH); SRP54, s 98.3 1.2E-05 4.1E-10 70.1 12.8 121 18-150 97-250 (425)
230 2og2_A Putative signal recogni 98.3 1.6E-05 5.6E-10 67.8 13.4 146 18-186 156-339 (359)
231 1zu4_A FTSY; GTPase, signal re 98.3 2.1E-05 7.2E-10 66.2 13.8 147 17-186 103-290 (320)
232 1t9h_A YLOQ, probable GTPase E 98.2 4E-07 1.4E-11 76.2 1.9 58 19-81 173-236 (307)
233 2px0_A Flagellar biosynthesis 98.2 2.1E-06 7E-11 71.7 6.2 122 18-151 104-253 (296)
234 1azs_C GS-alpha; complex (lyas 98.1 1.4E-05 4.9E-10 69.1 9.5 73 66-150 214-297 (402)
235 1ls1_A Signal recognition part 98.0 3.6E-05 1.2E-09 64.1 10.6 143 18-185 97-272 (295)
236 2xtz_A Guanine nucleotide-bind 98.0 1.6E-05 5.6E-10 67.8 8.6 72 68-150 182-263 (354)
237 2rcn_A Probable GTPase ENGC; Y 98.0 2.7E-06 9.1E-11 72.6 3.6 29 20-48 216-245 (358)
238 2yv5_A YJEQ protein; hydrolase 98.0 9.3E-06 3.2E-10 67.9 6.1 58 19-81 165-228 (302)
239 1u0l_A Probable GTPase ENGC; p 97.9 7.3E-06 2.5E-10 68.5 4.8 59 19-81 169-233 (301)
240 1puj_A YLQF, conserved hypothe 97.7 4.5E-05 1.5E-09 63.1 5.7 86 100-209 20-105 (282)
241 3ney_A 55 kDa erythrocyte memb 97.7 4.3E-06 1.5E-10 65.4 -0.9 26 18-43 18-43 (197)
242 3h2y_A GTPase family protein; 97.6 0.00012 4.2E-09 62.7 7.3 101 92-209 58-159 (368)
243 4dzz_A Plasmid partitioning pr 97.6 0.00059 2E-08 53.0 10.6 69 68-150 75-143 (206)
244 1u0l_A Probable GTPase ENGC; p 97.6 4.8E-05 1.6E-09 63.5 4.0 66 69-152 63-130 (301)
245 1lvg_A Guanylate kinase, GMP k 97.5 3.2E-05 1.1E-09 60.4 2.2 25 19-43 4-28 (198)
246 1kgd_A CASK, peripheral plasma 97.5 5.2E-05 1.8E-09 58.2 2.9 24 20-43 6-29 (180)
247 1ye8_A Protein THEP1, hypothet 97.4 6.2E-05 2.1E-09 57.8 2.6 23 21-43 2-24 (178)
248 3tif_A Uncharacterized ABC tra 97.4 0.0001 3.5E-09 59.2 3.9 26 19-44 31-56 (235)
249 1ex7_A Guanylate kinase; subst 97.4 2.6E-05 9.1E-10 60.3 0.2 22 21-42 3-24 (186)
250 1znw_A Guanylate kinase, GMP k 97.3 8.8E-05 3E-09 58.2 2.8 26 18-43 19-44 (207)
251 2pcj_A ABC transporter, lipopr 97.3 0.00012 4E-09 58.4 3.5 25 20-44 31-55 (224)
252 1s96_A Guanylate kinase, GMP k 97.3 9.4E-05 3.2E-09 58.8 2.9 27 18-44 15-41 (219)
253 1mv5_A LMRA, multidrug resista 97.3 0.00018 6E-09 58.1 4.4 27 18-44 27-53 (243)
254 1zp6_A Hypothetical protein AT 97.3 0.00015 5.2E-09 55.8 3.7 25 18-42 8-32 (191)
255 3tr0_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 57.2 3.0 24 19-42 7-30 (205)
256 1z6g_A Guanylate kinase; struc 97.3 8.8E-05 3E-09 58.8 2.4 25 19-43 23-47 (218)
257 2cbz_A Multidrug resistance-as 97.3 0.00015 5.1E-09 58.3 3.7 26 19-44 31-56 (237)
258 3ec1_A YQEH GTPase; atnos1, at 97.3 0.00015 5.1E-09 62.3 3.9 100 93-209 61-161 (369)
259 3a00_A Guanylate kinase, GMP k 97.3 9.1E-05 3.1E-09 57.1 2.2 23 21-43 3-25 (186)
260 2onk_A Molybdate/tungstate ABC 97.3 0.00016 5.4E-09 58.3 3.6 25 20-44 25-49 (240)
261 4g1u_C Hemin import ATP-bindin 97.3 0.00017 5.8E-09 59.1 3.8 26 19-44 37-62 (266)
262 3c8u_A Fructokinase; YP_612366 97.3 0.00012 4.2E-09 57.4 2.9 27 17-43 20-46 (208)
263 1b0u_A Histidine permease; ABC 97.3 0.00018 6.3E-09 58.7 4.0 26 19-44 32-57 (262)
264 2ff7_A Alpha-hemolysin translo 97.3 0.00016 5.5E-09 58.5 3.5 26 19-44 35-60 (247)
265 2pze_A Cystic fibrosis transme 97.3 0.00017 5.8E-09 57.7 3.6 26 19-44 34-59 (229)
266 3gfo_A Cobalt import ATP-bindi 97.3 0.00017 5.7E-09 59.4 3.6 26 19-44 34-59 (275)
267 1sgw_A Putative ABC transporte 97.2 0.00016 5.6E-09 57.2 3.3 25 20-44 36-60 (214)
268 2olj_A Amino acid ABC transpor 97.2 0.0002 7E-09 58.5 4.0 26 19-44 50-75 (263)
269 1g6h_A High-affinity branched- 97.2 0.00017 5.9E-09 58.7 3.5 26 19-44 33-58 (257)
270 3lnc_A Guanylate kinase, GMP k 97.2 9E-05 3.1E-09 59.2 1.7 25 19-43 27-52 (231)
271 1vpl_A ABC transporter, ATP-bi 97.2 0.00022 7.5E-09 58.0 4.0 26 19-44 41-66 (256)
272 1ji0_A ABC transporter; ATP bi 97.2 0.00019 6.5E-09 57.8 3.5 26 19-44 32-57 (240)
273 2ixe_A Antigen peptide transpo 97.2 0.00023 7.7E-09 58.5 3.9 26 19-44 45-70 (271)
274 4eun_A Thermoresistant glucoki 97.2 0.00016 5.4E-09 56.4 2.9 24 18-41 28-51 (200)
275 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.5E-09 56.4 3.3 26 18-43 7-32 (208)
276 3nh6_A ATP-binding cassette SU 97.2 0.00016 5.5E-09 60.4 2.8 27 19-45 80-106 (306)
277 2ihy_A ABC transporter, ATP-bi 97.2 0.00022 7.4E-09 58.8 3.6 27 19-45 47-73 (279)
278 4gp7_A Metallophosphoesterase; 97.2 0.00025 8.6E-09 53.9 3.5 23 19-41 9-31 (171)
279 2yz2_A Putative ABC transporte 97.2 0.00027 9.2E-09 57.8 3.9 26 19-44 33-58 (266)
280 3asz_A Uridine kinase; cytidin 97.2 0.00019 6.3E-09 56.3 2.9 25 18-42 5-29 (211)
281 2nq2_C Hypothetical ABC transp 97.2 0.00023 8E-09 57.8 3.5 25 20-44 32-56 (253)
282 2eyu_A Twitching motility prot 97.2 0.0002 6.8E-09 58.5 3.1 26 18-43 24-49 (261)
283 1htw_A HI0065; nucleotide-bind 97.2 0.00021 7.3E-09 53.7 3.0 25 19-43 33-57 (158)
284 2ghi_A Transport protein; mult 97.1 0.00026 8.9E-09 57.7 3.6 26 19-44 46-71 (260)
285 1knq_A Gluconate kinase; ALFA/ 97.1 0.00028 9.7E-09 53.5 3.5 24 18-41 7-30 (175)
286 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00024 8.3E-09 57.5 3.2 24 19-42 29-52 (250)
287 2qi9_C Vitamin B12 import ATP- 97.1 0.00025 8.5E-09 57.5 3.3 25 20-44 27-51 (249)
288 2zu0_C Probable ATP-dependent 97.1 0.00029 1E-08 57.7 3.7 24 19-42 46-69 (267)
289 2pjz_A Hypothetical protein ST 97.1 0.00031 1.1E-08 57.3 3.5 24 20-43 31-54 (263)
290 2v9p_A Replication protein E1; 97.1 0.00024 8.3E-09 59.2 2.8 25 18-42 125-149 (305)
291 4e22_A Cytidylate kinase; P-lo 97.1 0.00032 1.1E-08 56.8 3.5 28 17-44 25-55 (252)
292 2bbs_A Cystic fibrosis transme 97.1 0.00038 1.3E-08 57.7 3.8 26 19-44 64-89 (290)
293 2j41_A Guanylate kinase; GMP, 97.1 0.00029 9.8E-09 54.9 3.0 25 19-43 6-30 (207)
294 2bbw_A Adenylate kinase 4, AK4 97.0 0.00036 1.2E-08 56.2 3.6 26 19-44 27-55 (246)
295 3b85_A Phosphate starvation-in 97.0 0.0002 6.9E-09 56.4 2.0 27 20-47 23-49 (208)
296 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00041 1.4E-08 59.1 3.9 27 20-46 31-57 (359)
297 2qor_A Guanylate kinase; phosp 97.0 0.00037 1.3E-08 54.5 3.3 25 18-42 11-35 (204)
298 2yv5_A YJEQ protein; hydrolase 97.0 0.001 3.4E-08 55.4 6.2 48 100-152 76-125 (302)
299 3tui_C Methionine import ATP-b 97.0 0.00047 1.6E-08 58.9 4.0 27 19-45 54-80 (366)
300 3cwq_A Para family chromosome 97.0 0.00079 2.7E-08 52.9 5.1 66 68-151 67-134 (209)
301 1z47_A CYSA, putative ABC-tran 97.0 0.00043 1.5E-08 58.9 3.5 27 19-45 41-67 (355)
302 3l82_B F-box only protein 4; T 97.0 0.0018 6.1E-08 50.8 6.6 99 98-209 120-222 (227)
303 3rlf_A Maltose/maltodextrin im 97.0 0.00053 1.8E-08 58.9 4.0 26 20-45 30-55 (381)
304 2it1_A 362AA long hypothetical 97.0 0.00054 1.8E-08 58.5 4.0 27 19-45 29-55 (362)
305 3uie_A Adenylyl-sulfate kinase 97.0 0.00041 1.4E-08 54.0 3.0 26 18-43 24-49 (200)
306 2yyz_A Sugar ABC transporter, 97.0 0.00053 1.8E-08 58.5 3.9 27 19-45 29-55 (359)
307 3aez_A Pantothenate kinase; tr 96.9 0.0004 1.4E-08 58.2 3.1 27 17-43 88-114 (312)
308 3end_A Light-independent proto 96.9 0.0023 7.9E-08 53.1 7.7 67 68-148 156-224 (307)
309 1kag_A SKI, shikimate kinase I 96.9 0.00033 1.1E-08 53.0 2.3 23 20-42 5-27 (173)
310 2gza_A Type IV secretion syste 96.9 0.00048 1.6E-08 58.9 3.5 26 19-44 175-200 (361)
311 1v43_A Sugar-binding transport 96.9 0.0006 2.1E-08 58.4 4.0 27 19-45 37-63 (372)
312 1g29_1 MALK, maltose transport 96.9 0.00052 1.8E-08 58.9 3.5 26 20-45 30-55 (372)
313 2i3b_A HCR-ntpase, human cance 96.9 0.00034 1.2E-08 54.2 2.2 24 21-44 3-26 (189)
314 2f1r_A Molybdopterin-guanine d 96.9 0.0002 6.8E-09 54.6 0.8 24 20-43 3-26 (171)
315 2bdt_A BH3686; alpha-beta prot 96.9 0.0004 1.4E-08 53.4 2.5 22 20-41 3-24 (189)
316 3jvv_A Twitching mobility prot 96.9 0.00046 1.6E-08 58.9 3.0 26 18-43 122-147 (356)
317 3d31_A Sulfate/molybdate ABC t 96.8 0.00051 1.7E-08 58.4 2.9 26 20-45 27-52 (348)
318 1np6_A Molybdopterin-guanine d 96.8 0.00064 2.2E-08 51.9 3.2 24 19-42 6-29 (174)
319 3lw7_A Adenylate kinase relate 96.8 0.00063 2.2E-08 51.1 3.1 20 20-39 2-21 (179)
320 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00055 1.9E-08 57.8 2.9 26 19-44 171-196 (330)
321 2wwf_A Thymidilate kinase, put 96.8 0.00088 3E-08 52.3 3.9 26 16-41 7-32 (212)
322 2jeo_A Uridine-cytidine kinase 96.8 0.00066 2.2E-08 54.7 3.1 25 18-42 24-48 (245)
323 2ewv_A Twitching motility prot 96.8 0.00059 2E-08 58.6 2.9 26 18-43 135-160 (372)
324 2qt1_A Nicotinamide riboside k 96.8 0.0012 4E-08 51.6 4.4 26 17-42 19-44 (207)
325 1oxx_K GLCV, glucose, ABC tran 96.8 0.00048 1.6E-08 58.7 2.2 27 19-45 31-57 (353)
326 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.008 2.7E-07 48.3 9.3 24 18-41 38-61 (262)
327 1ly1_A Polynucleotide kinase; 96.7 0.00092 3.2E-08 50.6 3.4 22 20-41 3-24 (181)
328 3cnl_A YLQF, putative uncharac 96.7 0.00029 9.9E-09 57.5 0.5 43 101-152 19-61 (262)
329 1cke_A CK, MSSA, protein (cyti 96.7 0.00069 2.4E-08 53.6 2.7 23 20-42 6-28 (227)
330 4a74_A DNA repair and recombin 96.7 0.00064 2.2E-08 53.7 2.5 25 19-43 25-49 (231)
331 3tqc_A Pantothenate kinase; bi 96.7 0.00089 3E-08 56.2 3.4 27 16-42 89-115 (321)
332 3vaa_A Shikimate kinase, SK; s 96.7 0.00098 3.3E-08 51.8 3.4 24 18-41 24-47 (199)
333 3ec2_A DNA replication protein 96.7 0.00061 2.1E-08 52.0 2.2 25 19-43 38-62 (180)
334 1sq5_A Pantothenate kinase; P- 96.7 0.00089 3.1E-08 55.9 3.4 26 17-42 78-103 (308)
335 3gd7_A Fusion complex of cysti 96.7 0.00095 3.3E-08 57.6 3.6 26 19-44 47-72 (390)
336 1njg_A DNA polymerase III subu 96.7 0.0012 4.2E-08 52.0 4.1 22 20-41 46-67 (250)
337 2vp4_A Deoxynucleoside kinase; 96.7 0.00096 3.3E-08 53.2 3.3 26 17-42 18-43 (230)
338 4b4t_L 26S protease subunit RP 96.7 0.0065 2.2E-07 53.1 8.8 25 18-42 214-238 (437)
339 3kb2_A SPBC2 prophage-derived 96.7 0.00092 3.1E-08 50.2 3.0 21 21-41 3-23 (173)
340 2oap_1 GSPE-2, type II secreti 96.7 0.00073 2.5E-08 60.4 2.8 25 19-43 260-284 (511)
341 1p9r_A General secretion pathw 96.7 0.00082 2.8E-08 58.6 3.0 26 18-43 166-191 (418)
342 1jjv_A Dephospho-COA kinase; P 96.7 0.0011 3.7E-08 51.7 3.5 22 20-41 3-24 (206)
343 1qhx_A CPT, protein (chloramph 96.7 0.001 3.6E-08 50.4 3.2 22 20-41 4-25 (178)
344 2kjq_A DNAA-related protein; s 96.6 0.00065 2.2E-08 50.4 1.9 26 18-43 35-60 (149)
345 2ehv_A Hypothetical protein PH 96.6 0.001 3.5E-08 53.3 3.2 23 18-40 29-51 (251)
346 1xjc_A MOBB protein homolog; s 96.6 0.0012 4.2E-08 50.0 3.3 23 19-41 4-26 (169)
347 1lw7_A Transcriptional regulat 96.6 0.00071 2.4E-08 57.9 2.2 26 19-44 170-195 (365)
348 4b4t_K 26S protease regulatory 96.6 0.0098 3.4E-07 51.8 9.4 24 18-41 205-228 (428)
349 1odf_A YGR205W, hypothetical 3 96.6 0.0012 4.3E-08 54.6 3.6 28 16-43 28-55 (290)
350 3b60_A Lipid A export ATP-bind 96.6 0.0013 4.4E-08 59.9 3.9 27 19-45 369-395 (582)
351 1rz3_A Hypothetical protein rb 96.6 0.0011 3.7E-08 51.6 3.0 24 18-41 21-44 (201)
352 3t61_A Gluconokinase; PSI-biol 96.6 0.001 3.5E-08 51.7 2.8 23 19-41 18-40 (202)
353 3b5x_A Lipid A export ATP-bind 96.6 0.0014 4.8E-08 59.6 4.0 27 19-45 369-395 (582)
354 1fnn_A CDC6P, cell division co 96.6 0.014 4.9E-07 49.6 10.2 22 21-42 46-67 (389)
355 2cdn_A Adenylate kinase; phosp 96.6 0.0015 5.3E-08 50.6 3.7 23 18-40 19-41 (201)
356 2rhm_A Putative kinase; P-loop 96.6 0.0015 5E-08 50.2 3.5 22 19-40 5-26 (193)
357 2if2_A Dephospho-COA kinase; a 96.6 0.001 3.5E-08 51.7 2.6 22 20-41 2-23 (204)
358 3trf_A Shikimate kinase, SK; a 96.6 0.0013 4.6E-08 50.1 3.2 22 19-40 5-26 (185)
359 1ukz_A Uridylate kinase; trans 96.5 0.0021 7.1E-08 49.9 4.2 25 16-40 12-36 (203)
360 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0017 5.8E-08 58.5 4.2 31 17-47 45-75 (538)
361 1uf9_A TT1252 protein; P-loop, 96.5 0.0016 5.5E-08 50.4 3.6 26 17-42 6-31 (203)
362 4a82_A Cystic fibrosis transme 96.5 0.0012 4E-08 60.1 3.1 27 19-45 367-393 (578)
363 1sxj_E Activator 1 40 kDa subu 96.5 0.21 7.1E-06 41.9 17.0 21 21-41 38-58 (354)
364 1nij_A Hypothetical protein YJ 96.5 0.00092 3.1E-08 56.1 2.3 26 18-43 3-28 (318)
365 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.4E-08 51.4 3.4 24 17-40 2-25 (220)
366 1gvn_B Zeta; postsegregational 96.5 0.0017 5.7E-08 53.7 3.7 25 17-41 31-55 (287)
367 3h4m_A Proteasome-activating n 96.5 0.008 2.7E-07 49.1 7.9 23 19-41 51-73 (285)
368 3ozx_A RNAse L inhibitor; ATP 96.5 0.0023 7.7E-08 57.7 4.8 29 18-46 24-52 (538)
369 2yl4_A ATP-binding cassette SU 96.5 0.0013 4.4E-08 60.1 3.2 26 19-44 370-395 (595)
370 4b4t_J 26S protease regulatory 96.5 0.015 5.2E-07 50.1 9.7 25 18-42 181-205 (405)
371 3qf4_B Uncharacterized ABC tra 96.5 0.0014 4.6E-08 59.9 3.3 28 18-45 380-407 (598)
372 1y63_A LMAJ004144AAA protein; 96.5 0.0019 6.6E-08 49.4 3.7 25 18-42 9-33 (184)
373 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.6E-08 49.7 3.2 22 20-41 4-25 (192)
374 3cm0_A Adenylate kinase; ATP-b 96.5 0.0018 6.1E-08 49.4 3.4 22 19-40 4-25 (186)
375 1nks_A Adenylate kinase; therm 96.4 0.0017 5.7E-08 49.7 3.2 22 20-41 2-23 (194)
376 3j16_B RLI1P; ribosome recycli 96.4 0.0021 7E-08 58.7 4.2 32 17-48 101-132 (608)
377 3iij_A Coilin-interacting nucl 96.4 0.0019 6.5E-08 49.1 3.4 22 19-40 11-32 (180)
378 4b4t_I 26S protease regulatory 96.4 0.013 4.5E-07 50.9 9.0 25 18-42 215-239 (437)
379 3qf4_A ABC transporter, ATP-bi 96.4 0.0016 5.4E-08 59.4 3.4 27 19-45 369-395 (587)
380 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0012 4.3E-08 58.1 2.4 27 18-44 137-163 (460)
381 3u61_B DNA polymerase accessor 96.4 0.33 1.1E-05 40.1 18.3 21 21-41 50-70 (324)
382 3kta_A Chromosome segregation 96.4 0.0017 5.9E-08 49.4 2.9 21 21-41 28-48 (182)
383 3bk7_A ABC transporter ATP-bin 96.4 0.0023 8E-08 58.4 4.2 32 17-48 115-146 (607)
384 2jaq_A Deoxyguanosine kinase; 96.4 0.0019 6.6E-08 49.9 3.2 21 21-41 2-22 (205)
385 2x8a_A Nuclear valosin-contain 96.4 0.0013 4.5E-08 53.9 2.3 21 22-42 47-67 (274)
386 1ak2_A Adenylate kinase isoenz 96.3 0.0024 8.2E-08 50.9 3.6 26 15-40 12-37 (233)
387 4b4t_H 26S protease regulatory 96.3 0.013 4.3E-07 51.4 8.3 25 18-42 242-266 (467)
388 2yvu_A Probable adenylyl-sulfa 96.3 0.0032 1.1E-07 48.1 4.1 25 18-42 12-36 (186)
389 2c95_A Adenylate kinase 1; tra 96.3 0.0025 8.4E-08 49.0 3.4 23 18-40 8-30 (196)
390 1ixz_A ATP-dependent metallopr 96.3 0.0016 5.4E-08 52.6 2.4 22 21-42 51-72 (254)
391 1zak_A Adenylate kinase; ATP:A 96.3 0.0021 7.3E-08 50.7 3.1 22 19-40 5-26 (222)
392 3ozx_A RNAse L inhibitor; ATP 96.3 0.0025 8.7E-08 57.3 3.9 28 19-46 294-321 (538)
393 2v54_A DTMP kinase, thymidylat 96.3 0.0028 9.6E-08 49.0 3.7 24 19-42 4-27 (204)
394 2plr_A DTMP kinase, probable t 96.3 0.0026 8.9E-08 49.5 3.5 23 19-41 4-26 (213)
395 1tev_A UMP-CMP kinase; ploop, 96.3 0.0026 8.8E-08 48.7 3.4 22 19-40 3-24 (196)
396 3fb4_A Adenylate kinase; psych 96.3 0.0023 7.8E-08 50.2 3.1 20 21-40 2-21 (216)
397 3euj_A Chromosome partition pr 96.2 0.0019 6.4E-08 57.2 2.6 24 20-43 30-53 (483)
398 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 8.8E-08 50.4 3.2 22 19-40 7-28 (227)
399 4f4c_A Multidrug resistance pr 96.2 0.0019 6.5E-08 64.3 2.8 27 19-45 1105-1131(1321)
400 2pez_A Bifunctional 3'-phospho 96.2 0.0031 1E-07 47.9 3.5 23 19-41 5-27 (179)
401 3tlx_A Adenylate kinase 2; str 96.2 0.0032 1.1E-07 50.5 3.8 23 18-40 28-50 (243)
402 1nn5_A Similar to deoxythymidy 96.2 0.0031 1.1E-07 49.2 3.4 24 18-41 8-31 (215)
403 3dl0_A Adenylate kinase; phosp 96.2 0.0027 9.1E-08 49.8 3.1 20 21-40 2-21 (216)
404 2p5t_B PEZT; postsegregational 96.2 0.0024 8.2E-08 51.6 2.8 26 16-41 29-54 (253)
405 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0033 1.1E-07 56.6 3.9 29 19-47 312-340 (538)
406 3umf_A Adenylate kinase; rossm 96.2 0.0042 1.4E-07 49.0 4.1 25 18-42 28-52 (217)
407 1qf9_A UMP/CMP kinase, protein 96.2 0.0039 1.4E-07 47.6 3.8 22 19-40 6-27 (194)
408 1vht_A Dephospho-COA kinase; s 96.1 0.0036 1.2E-07 49.1 3.6 23 19-41 4-26 (218)
409 1via_A Shikimate kinase; struc 96.1 0.0027 9.3E-08 48.0 2.7 21 21-41 6-26 (175)
410 3bk7_A ABC transporter ATP-bin 96.1 0.0035 1.2E-07 57.2 3.9 29 19-47 382-410 (607)
411 2obl_A ESCN; ATPase, hydrolase 96.1 0.0023 8E-08 54.3 2.5 26 19-44 71-96 (347)
412 2bwj_A Adenylate kinase 5; pho 96.1 0.0035 1.2E-07 48.3 3.3 23 19-41 12-34 (199)
413 3eph_A TRNA isopentenyltransfe 96.1 0.0051 1.7E-07 53.1 4.5 22 19-40 2-23 (409)
414 1iy2_A ATP-dependent metallopr 96.1 0.0024 8.1E-08 52.3 2.4 22 21-42 75-96 (278)
415 1jbk_A CLPB protein; beta barr 96.1 0.004 1.4E-07 47.1 3.5 24 19-42 43-66 (195)
416 2ze6_A Isopentenyl transferase 96.1 0.0036 1.2E-07 50.6 3.3 22 20-41 2-23 (253)
417 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.003 1E-07 49.8 2.8 22 20-41 24-45 (235)
418 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0039 1.3E-07 50.6 3.5 23 19-41 4-26 (260)
419 4f4c_A Multidrug resistance pr 96.0 0.0036 1.2E-07 62.3 3.8 28 19-46 444-471 (1321)
420 1in4_A RUVB, holliday junction 96.0 0.0027 9.2E-08 53.5 2.5 24 20-43 52-75 (334)
421 3j16_B RLI1P; ribosome recycli 96.0 0.0042 1.4E-07 56.7 3.9 28 21-48 380-407 (608)
422 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.3E-08 50.9 1.0 21 21-41 2-22 (214)
423 2pt5_A Shikimate kinase, SK; a 96.0 0.0038 1.3E-07 46.7 3.1 20 21-40 2-21 (168)
424 3a8t_A Adenylate isopentenyltr 96.0 0.0053 1.8E-07 51.7 4.2 25 19-43 40-64 (339)
425 1cr0_A DNA primase/helicase; R 96.0 0.0033 1.1E-07 51.9 2.9 24 19-42 35-58 (296)
426 3nwj_A ATSK2; P loop, shikimat 96.0 0.0028 9.7E-08 51.2 2.3 23 19-41 48-70 (250)
427 2dpy_A FLII, flagellum-specifi 96.0 0.0029 9.8E-08 55.5 2.5 26 19-44 157-182 (438)
428 2iyv_A Shikimate kinase, SK; t 96.0 0.0033 1.1E-07 47.9 2.6 21 20-40 3-23 (184)
429 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.025 8.5E-07 47.4 8.2 24 18-41 44-67 (322)
430 3l2o_B F-box only protein 4; s 96.0 0.006 2E-07 50.2 4.2 97 100-209 207-307 (312)
431 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0051 1.8E-07 45.5 3.6 21 20-40 24-44 (149)
432 3r20_A Cytidylate kinase; stru 96.0 0.0043 1.5E-07 49.6 3.2 23 18-40 8-30 (233)
433 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0045 1.5E-07 52.9 3.6 20 21-40 25-44 (365)
434 1e6c_A Shikimate kinase; phosp 95.9 0.0037 1.3E-07 47.0 2.7 21 20-40 3-23 (173)
435 1e4v_A Adenylate kinase; trans 95.9 0.0041 1.4E-07 48.7 3.1 20 21-40 2-21 (214)
436 1svm_A Large T antigen; AAA+ f 95.9 0.0036 1.2E-07 53.7 2.9 23 19-41 169-191 (377)
437 1m7g_A Adenylylsulfate kinase; 95.9 0.0051 1.8E-07 48.1 3.5 23 19-41 25-47 (211)
438 1lv7_A FTSH; alpha/beta domain 95.9 0.0042 1.4E-07 50.1 3.0 24 19-42 45-68 (257)
439 2f6r_A COA synthase, bifunctio 95.9 0.0064 2.2E-07 50.0 4.1 23 18-40 74-96 (281)
440 2vli_A Antibiotic resistance p 95.9 0.0033 1.1E-07 47.7 2.2 22 19-40 5-26 (183)
441 2pbr_A DTMP kinase, thymidylat 95.9 0.0045 1.6E-07 47.3 3.0 21 21-41 2-22 (195)
442 2z0h_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 47.4 3.1 21 21-41 2-22 (197)
443 2oze_A ORF delta'; para, walke 95.8 0.052 1.8E-06 44.6 9.5 66 69-150 155-225 (298)
444 3g5u_A MCG1178, multidrug resi 95.8 0.0049 1.7E-07 61.2 3.7 27 19-45 416-442 (1284)
445 2cvh_A DNA repair and recombin 95.8 0.0047 1.6E-07 48.2 2.9 23 19-41 20-42 (220)
446 1uj2_A Uridine-cytidine kinase 95.8 0.0058 2E-07 49.2 3.4 24 18-41 21-44 (252)
447 2xb4_A Adenylate kinase; ATP-b 95.8 0.0056 1.9E-07 48.4 3.2 20 21-40 2-21 (223)
448 2w58_A DNAI, primosome compone 95.7 0.0061 2.1E-07 47.1 3.2 23 20-42 55-77 (202)
449 1n0w_A DNA repair protein RAD5 95.7 0.0046 1.6E-07 49.1 2.6 24 19-42 24-47 (243)
450 4eaq_A DTMP kinase, thymidylat 95.7 0.008 2.7E-07 47.8 4.0 25 18-42 25-49 (229)
451 2iw3_A Elongation factor 3A; a 95.7 0.0035 1.2E-07 60.0 2.1 26 19-44 699-724 (986)
452 1zuh_A Shikimate kinase; alpha 95.7 0.0063 2.1E-07 45.6 3.1 22 19-40 7-28 (168)
453 1qhl_A Protein (cell division 95.7 0.00069 2.4E-08 54.0 -2.4 24 21-44 29-52 (227)
454 3sr0_A Adenylate kinase; phosp 95.7 0.0062 2.1E-07 47.7 3.1 22 21-42 2-23 (206)
455 3vfd_A Spastin; ATPase, microt 95.7 0.037 1.3E-06 47.5 8.3 24 18-41 147-170 (389)
456 1jr3_A DNA polymerase III subu 95.7 0.015 5.2E-07 49.3 5.7 21 21-41 40-60 (373)
457 2p65_A Hypothetical protein PF 95.7 0.0054 1.8E-07 46.3 2.6 24 19-42 43-66 (187)
458 3be4_A Adenylate kinase; malar 95.6 0.0064 2.2E-07 47.8 3.1 21 20-40 6-26 (217)
459 3bos_A Putative DNA replicatio 95.6 0.007 2.4E-07 47.8 3.3 24 19-42 52-75 (242)
460 3t15_A Ribulose bisphosphate c 95.6 0.011 3.7E-07 48.9 4.5 24 18-41 35-58 (293)
461 3foz_A TRNA delta(2)-isopenten 95.5 0.0096 3.3E-07 49.5 3.8 23 19-41 10-32 (316)
462 1ltq_A Polynucleotide kinase; 95.5 0.0082 2.8E-07 49.5 3.4 22 20-41 3-24 (301)
463 2qmh_A HPR kinase/phosphorylas 95.5 0.0097 3.3E-07 46.2 3.5 24 19-42 34-57 (205)
464 2grj_A Dephospho-COA kinase; T 95.5 0.0091 3.1E-07 46.1 3.4 25 17-41 10-34 (192)
465 3zvl_A Bifunctional polynucleo 95.4 0.018 6.3E-07 50.0 5.5 24 18-41 257-280 (416)
466 3exa_A TRNA delta(2)-isopenten 95.4 0.0098 3.3E-07 49.6 3.5 24 19-42 3-26 (322)
467 1a7j_A Phosphoribulokinase; tr 95.4 0.0053 1.8E-07 50.7 1.8 24 18-41 4-27 (290)
468 1q3t_A Cytidylate kinase; nucl 95.4 0.011 3.7E-07 47.1 3.5 23 19-41 16-38 (236)
469 4fcw_A Chaperone protein CLPB; 95.4 0.013 4.6E-07 48.3 4.2 25 18-42 46-70 (311)
470 3cr8_A Sulfate adenylyltranfer 95.4 0.0048 1.7E-07 55.6 1.6 26 18-43 368-393 (552)
471 3ake_A Cytidylate kinase; CMP 95.3 0.0096 3.3E-07 46.0 3.1 21 21-41 4-24 (208)
472 3syl_A Protein CBBX; photosynt 95.3 0.012 4.1E-07 48.6 3.9 25 17-41 65-89 (309)
473 3n70_A Transport activator; si 95.3 0.01 3.6E-07 43.4 3.1 24 19-42 24-47 (145)
474 3g5u_A MCG1178, multidrug resi 95.3 0.0099 3.4E-07 59.0 3.8 27 19-45 1059-1085(1284)
475 3crm_A TRNA delta(2)-isopenten 95.3 0.012 4E-07 49.3 3.7 22 20-41 6-27 (323)
476 3b9p_A CG5977-PA, isoform A; A 95.3 0.011 3.6E-07 48.7 3.4 24 18-41 53-76 (297)
477 1nlf_A Regulatory protein REPA 95.3 0.0075 2.6E-07 49.3 2.5 34 7-41 19-52 (279)
478 3qks_A DNA double-strand break 95.3 0.013 4.3E-07 45.7 3.6 21 20-40 24-44 (203)
479 3ux8_A Excinuclease ABC, A sub 95.3 0.007 2.4E-07 56.0 2.4 22 19-40 348-369 (670)
480 3d3q_A TRNA delta(2)-isopenten 95.3 0.011 3.7E-07 49.9 3.3 22 20-41 8-29 (340)
481 3cf0_A Transitional endoplasmi 95.2 0.012 4E-07 48.8 3.4 24 19-42 49-72 (301)
482 3cf2_A TER ATPase, transitiona 95.2 0.067 2.3E-06 50.3 8.8 26 18-43 237-262 (806)
483 4aby_A DNA repair protein RECN 95.2 0.0031 1.1E-07 54.6 -0.2 20 21-40 62-81 (415)
484 2iw3_A Elongation factor 3A; a 95.2 0.0088 3E-07 57.3 2.9 25 19-43 461-485 (986)
485 3v9p_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 47.2 2.8 26 16-41 22-47 (227)
486 1p5z_B DCK, deoxycytidine kina 95.1 0.011 3.7E-07 47.9 2.8 25 17-41 22-46 (263)
487 3co5_A Putative two-component 95.1 0.01 3.5E-07 43.3 2.4 24 19-42 27-50 (143)
488 1t9h_A YLOQ, probable GTPase E 95.1 0.074 2.5E-06 44.2 7.8 49 101-152 84-132 (307)
489 1zcb_A G alpha I/13; GTP-bindi 95.0 0.016 5.3E-07 49.5 3.6 23 17-39 31-53 (362)
490 1tue_A Replication protein E1; 95.0 0.011 3.9E-07 46.0 2.5 22 20-41 59-80 (212)
491 4b4t_M 26S protease regulatory 95.0 0.013 4.4E-07 51.2 3.0 25 18-42 214-238 (434)
492 1d2n_A N-ethylmaleimide-sensit 94.9 0.019 6.4E-07 46.6 3.8 25 17-41 62-86 (272)
493 2chg_A Replication factor C sm 94.9 0.014 4.9E-07 45.1 2.9 21 21-41 40-60 (226)
494 3thx_A DNA mismatch repair pro 94.8 0.06 2.1E-06 51.5 7.5 21 19-39 662-682 (934)
495 2qby_A CDC6 homolog 1, cell di 94.8 0.017 5.7E-07 49.0 3.2 25 18-42 44-68 (386)
496 1w1w_A Structural maintenance 94.8 0.014 4.7E-07 51.0 2.7 24 19-42 26-49 (430)
497 1pzn_A RAD51, DNA repair and r 94.8 0.015 5E-07 49.4 2.8 25 19-43 131-155 (349)
498 2qgz_A Helicase loader, putati 94.7 0.019 6.3E-07 47.8 3.3 23 19-41 152-174 (308)
499 1qvr_A CLPB protein; coiled co 94.7 0.053 1.8E-06 51.6 6.8 24 19-42 191-214 (854)
500 2ocp_A DGK, deoxyguanosine kin 94.7 0.021 7.2E-07 45.5 3.5 23 19-41 2-24 (241)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=100.00 E-value=2.7e-32 Score=224.18 Aligned_cols=207 Identities=34% Similarity=0.554 Sum_probs=159.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh-HHHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFVSKEI 93 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~-~~~~~~~ 93 (259)
.....++|+|+|.+|||||||+|+|++...+.....+.++|..+...... .++..+.||||||+++..... +.....+
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR-WDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE-ETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE-ECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 34567999999999999999999999998866655555677777666555 578899999999998654332 2344556
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccc-cCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKV-FDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~-~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
..++..+.+++|++|+|+|++ +++..+..+++++.+.++... ..|+++|+||+|+.. .++++++.......++++
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l 171 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALREL 171 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHH
Confidence 666666678999999999998 788999999999999887653 348999999999754 457777754345679999
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG 227 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (259)
++.|+.++++|++.+.. +....|+.+|++.|.++++++++.+|++++|+.++..
T Consensus 172 ~~~~g~~~~~~~~~~~~-~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~ 225 (247)
T 3lxw_A 172 VAECGGRVCAFDNRATG-REQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVL 225 (247)
T ss_dssp HHHTTTCEEECCTTCCH-HHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHG
T ss_pred HHHcCCeEEEEeCCCCc-cccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 99999999999988643 2446899999999999999999999999999988743
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=223.04 Aligned_cols=209 Identities=35% Similarity=0.635 Sum_probs=145.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...++|+|+|++|||||||+|+|+|...+.......++|..+...... ..+..+.||||||+.+...+.......+..+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999988755544434666666665555 5778999999999998777667777788888
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
+..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|+... ..+++++.. ....++.+++.|
T Consensus 106 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~~ 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDIF 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHHc
Confidence 888889999999999998 7777888888888887877666799999999999876 677777763 456799999999
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKL 231 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (259)
+.++++|++.+... ....++.+|++.|..++.++++.+|+++++++.+++..+.
T Consensus 182 ~~~~~~~~~~~~~~-~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~~ 235 (239)
T 3lxx_A 182 GDRYCALNNKATGA-EQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQ 235 (239)
T ss_dssp SSSEEECCTTCCHH-HHHHHHHHHHHHHHHHHHHCTTSCC---------------
T ss_pred CCEEEEEECCCCcc-ccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 99999999876432 4457999999999999999999999999999988664433
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.96 E-value=1.4e-27 Score=197.50 Aligned_cols=205 Identities=31% Similarity=0.573 Sum_probs=155.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
....++|+|+|++|||||||+|+|++...+.....+.++|..+....+. ..+..+.||||||+.+.......+...+..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS-WGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE-ETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE-eCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 4456899999999999999999999988665544443356655555444 577899999999998776666666666777
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe-CCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT-GGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.+..+++.+|++|+|+|++ +++..+..+++++.+.++.....|+++|+| |+|+.. ..+..++.......++.++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHH
Confidence 7777788999999999998 588888888899998887655568888888 999873 34555554333456777888
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK 226 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
.|+.++..|.. ...++....|+.+|++.|.+++..+.+.+|.++.+.++.+
T Consensus 174 ~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 174 ACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp HTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred HhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 99887765544 3344455689999999999999988878898888777654
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=4.2e-22 Score=160.41 Aligned_cols=179 Identities=13% Similarity=0.162 Sum_probs=116.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~~~~~~ 94 (259)
...++|+|+|.+|||||||+|+|++...........++|............+..+.||||||+.+...... .....+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 45689999999999999999999998732222334556666655544434567899999999876533221 1112222
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.........+|++|||+|++++++..+..++.++.. .+ .|+++|+||+|+... ........ .+...+.
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~l~ 174 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TG----KPIHSLLTKCDKLTR--QESINALR-----ATQKSLD 174 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GC----CCEEEEEECGGGSCH--HHHHHHHH-----HHHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEeccccCCh--hhHHHHHH-----HHHHHHH
Confidence 222223456899999999997888888888777765 22 499999999998865 33332222 2333333
Q ss_pred Hc-----CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 LC-----ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 ~~-----~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+ .....+|..++..+ .|+.+|++.|.+.++..
T Consensus 175 ~~~~~~~~~~~~~~~~SA~~g----~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQLFSALKR----TGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHTCCSCEEEEEEBTTTT----BSHHHHHHHHHHHHC--
T ss_pred hhhhcccCCCCeEEEeecCCC----cCHHHHHHHHHHhcCcc
Confidence 32 23333444444333 78999999999888654
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=3.8e-22 Score=168.74 Aligned_cols=177 Identities=14% Similarity=0.214 Sum_probs=119.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHH
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
++..+...|+++|++|||||||+|+|+|...... ...+++|......... .. +..+.||||||+.+.. ......+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~-~~~~~~i~lvDTPG~~~~~-~~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKN-IPNEAQIIFLDTPGIYEPK-KSDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEE-ETTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEe-cCCCCeEEEEECcCCCccc-cchhHHHH
Confidence 3445668999999999999999999999886332 2233445444444333 45 7899999999998754 12334455
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHH-HHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAA-IHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
+......++..+|++|+|+|++++.+..+... ++.+.. . ..|+++|+||+|+..+. ..+.+ .+..
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~----~~pvilV~NK~Dl~~~~-~~~~~--------~~~~ 147 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-L----NKPVIVVINKIDKIGPA-KNVLP--------LIDE 147 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-G----CCCEEEEEECGGGSSSG-GGGHH--------HHHH
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-c----CCCEEEEEECccCCCCH-HHHHH--------HHHH
Confidence 55555556667899999999997888887665 555554 2 34999999999987321 22222 3344
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+.+.++....+|..++..+ .|+.+|++.+.+.+++.
T Consensus 148 l~~~~~~~~~i~~vSA~~g----~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 148 IHKKHPELTEIVPISALKG----ANLDELVKTILKYLPEG 183 (308)
T ss_dssp HHHHCTTCCCEEECBTTTT----BSHHHHHHHHHHHSCBC
T ss_pred HHHhccCCCeEEEEeCCCC----CCHHHHHHHHHHhCccC
Confidence 5555543233444444433 79999999999988754
No 6
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.87 E-value=1.7e-21 Score=161.15 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=130.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...++|+++|.+|+|||||+|+|++....... ...++|.......+. .++..+.||||||+.+.......+.+.+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRT-MGGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEE-ECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35689999999999999999999998753322 234445555544444 5778999999999987655455555555555
Q ss_pred HhhcCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+ ...++|++|||++++. +++..+..+++.+.+.++.....|+++|+||+|+.......+++++.. ....++.++..
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~ 188 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA 188 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence 4 3457899999988863 577778889999999888777779999999999875544677777652 23345666655
Q ss_pred cC-----------CcEEEEeCCCccccc---------chhHHHHHHHHHHHHHHHhCC
Q 024985 176 CE-----------NRRVLFDNKTKDAAT---------RTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 176 ~~-----------~~~~~~~~~~~~~~~---------~~~~i~eLl~~i~~~~~~~~~ 213 (259)
+. .++++++++.....+ ....+..|+..|.+++.....
T Consensus 189 ~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~ 246 (262)
T 3def_A 189 GSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRK 246 (262)
T ss_dssp HHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSC
T ss_pred HhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhCCCC
Confidence 43 344455554322111 112567778887777654333
No 7
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.87 E-value=9.4e-21 Score=149.18 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=104.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH--HHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF--VSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~--~~~~~~ 94 (259)
...++|+++|.+|||||||+|+|++...........+.|....... . +..+.+|||||+.+....... ....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 4578999999999999999999998863222233344555544432 2 347999999998776544321 111222
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.........+|++++|+|++++.+..+..+++++.. .+ .|+++|+||+|+... ..+..... .++..+.
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~~~ 164 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YG----IPVIVIATKADKIPK--GKWDKHAK-----VVRQTLN 164 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCG--GGHHHHHH-----HHHHHHT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--HHHHHHHH-----HHHHHHc
Confidence 222223346699999999997888888777777765 22 399999999998865 33332111 1222121
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
. .....++..++..+ .++.+|++.|.+.+.
T Consensus 165 ~-~~~~~~~~~Sa~~~----~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 I-DPEDELILFSSETK----KGKDEAWGAIKKMIN 194 (195)
T ss_dssp C-CTTSEEEECCTTTC----TTHHHHHHHHHHHHT
T ss_pred c-cCCCceEEEEccCC----CCHHHHHHHHHHHhc
Confidence 1 12233455554443 789999999887653
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=2.7e-20 Score=146.21 Aligned_cols=172 Identities=16% Similarity=0.203 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH--HHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF--VSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~--~~~~~~ 94 (259)
...++|+++|.+|||||||+|+|++..... .....+.|...... ..+..+.+|||||+......... ....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 456899999999999999999999987322 22234445444433 22457889999998765443321 122233
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.........+|++++|+|++...+..+..++.++... + .|+++|+||+|+.+. ........ .++....
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM--SERAKKLE-----EHRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHH-----HHHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh--HHHHHHHH-----HHHHHHh
Confidence 3333344677999999999877788777777777663 3 399999999998855 33333222 2334444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+. +.++..++..+ .++.+|++.+.+.+.+
T Consensus 164 ~~~~-~~~~~~Sa~~~----~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGE-YTIIPTSSVTG----EGISELLDLISTLLKE 194 (195)
T ss_dssp SSCC-SCEEECCTTTC----TTHHHHHHHHHHHHC-
T ss_pred hcCC-CceEEEecCCC----CCHHHHHHHHHHHhhc
Confidence 3232 23444444443 7999999999887754
No 9
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.86 E-value=1.2e-20 Score=156.67 Aligned_cols=203 Identities=20% Similarity=0.302 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...++|+++|.+|+|||||+|+|++....... ...++|......... ..+..+.||||||+.+...........+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 34689999999999999999999998753332 234445444444443 5677999999999976544334444444333
Q ss_pred HhhcCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+ ....+|++|||+|++. +++..+..+++.+.+.++...+.|+++|+||+|+.++.+.+++++..+ ....++..++.
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~ 191 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS 191 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH
Confidence 2 3457899999988863 577778889999988888766679999999999876533466666542 22234444332
Q ss_pred cC----------CcEEEEeCCCcc-----c----ccchhHHHHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 024985 176 CE----------NRRVLFDNKTKD-----A----ATRTEQVGKLISLVNSVILENGGQPYS-DEIFAEL 224 (259)
Q Consensus 176 ~~----------~~~~~~~~~~~~-----~----~~~~~~i~eLl~~i~~~~~~~~~~~~~-~~~~~~~ 224 (259)
.. .++.+..+.... + .....+...|++.|.+++...+...+. +++.+..
T Consensus 192 ~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~ 260 (270)
T 1h65_A 192 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL 260 (270)
T ss_dssp HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHH
T ss_pred hhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCC
Confidence 11 133333332110 0 011235779999999999887777654 4555543
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.86 E-value=8.8e-21 Score=159.66 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=113.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|++|||||||+|+|++....... ..+++|..... .+...++..+.||||||+.+... .+.+.+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~-~i~~~~~~~l~l~DTpG~~~~~~---~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLR-GILTEGRRQIVFVDTPGLHKPMD---ALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEE-EEEEETTEEEEEEECCCCCCCCS---HHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEE-EEEEeCCcEEEEecCccccchhh---HHHHHHHHHH
Confidence 4568999999999999999999998863321 12334443332 22235677999999999986532 3444556666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCccc-HHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDET-LEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 176 (259)
..++..+|++|+|+|++++++..+..+++.+.+.. ...|+++|+||+|+... .. +.+ .++.+
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~--~~~~~~------------~~~~~ 143 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV---GKVPILLVGNKLDAAKY--PEEAMK------------AYHEL 143 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSS--HHHHHH------------HHHHT
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc---CCCCEEEEEECcccCCc--hHHHHH------------HHHHh
Confidence 67788999999999998788888777767666532 12499999999998754 22 221 22222
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.....++..++..+ .++.+|++.+...+++
T Consensus 144 ~~~~~~~~iSA~~g----~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 144 LPEAEPRMLSALDE----RQVAELKADLLALMPE 173 (301)
T ss_dssp STTSEEEECCTTCH----HHHHHHHHHHHTTCCB
T ss_pred cCcCcEEEEeCCCC----CCHHHHHHHHHHhccc
Confidence 11112455554433 8999999999887754
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=2.9e-20 Score=150.41 Aligned_cols=184 Identities=17% Similarity=0.103 Sum_probs=106.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985 12 PTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK 91 (259)
Q Consensus 12 ~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~ 91 (259)
++......++|+|+|.+|||||||+|+|++...... ...+.|......... ..+..+.+|||||+.+.........
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~- 97 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFD-HKLNKYQIIDTPGLLDRAFENRNTI- 97 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEE-ETTEEEEEEECTTTTTSCGGGCCHH-
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeee-cCCCeEEEEECCCCcCcccchhhhH-
Confidence 444445679999999999999999999999875322 223445555544433 4667899999999865321111000
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
.. ..+......+|++|+|+|++++.+......+.++..+.......|+++|+||+|+... ..+.... ...+..
T Consensus 98 ~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~----~~~~~~ 170 (228)
T 2qu8_A 98 EM-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDN----KLLIKQ 170 (228)
T ss_dssp HH-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHH----HHHHHH
T ss_pred HH-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHH----HHHHHH
Confidence 01 1111224567999999999865443222233333332221113599999999998754 2211100 012344
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+....+....+|..++..+ .++.+|++.|.+.+.+
T Consensus 171 ~~~~~~~~~~~~~~SA~~g----~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 171 ILDNVKNPIKFSSFSTLTG----VGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHCCSCEEEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEecccC----CCHHHHHHHHHHHHHH
Confidence 4444442244555565544 7899999998887654
No 12
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.84 E-value=1.5e-20 Score=145.63 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=106.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
....++|+++|.+|||||||+|+|++....... .++.|.......+. .++..+.+|||||......
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~----------- 70 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVT-VNDKKITFLDTPGHEAFTT----------- 70 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEE-ETTEEEEESCCCSSSSSSC-----------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEE-eCCceEEEEECCCCHHHHH-----------
Confidence 346689999999999999999999987753322 22233333333333 4677899999999764322
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
........+|++|+|+|++++........+..+.. . ..|+++|+||+|+.......+...+.. ...+...
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 140 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---A--NVPIIVAINKMDKPEANPDRVMQELME-----YNLVPEE 140 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---G--SCCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTT
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---C--CCCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhH
Confidence 11245678899999999986666666555544422 2 349999999999875421222222211 0001111
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
++..+.++..++..+ .++.+|++.|.+.+...
T Consensus 141 ~~~~~~~~~~Sa~~~----~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 141 WGGDTIFCKLSAKTK----EGLDHLLEMILLVSEME 172 (178)
T ss_dssp TTSSEEEEECCSSSS----HHHHHHHHHHHHHHHHT
T ss_pred cCCcccEEEEecCCC----CCHHHHHHHHHHhhhhh
Confidence 222245666666554 89999999998877653
No 13
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=7.7e-20 Score=139.25 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
++|+++|.+|+|||||+|++++....... ...+.|.......+. ..+..+.+|||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVE-TDRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEE-ETTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEE-eCCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999987642221 223444444444444 5677999999999875332 11223333344
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN- 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (259)
....+|++++|+|++++++..+..+..++.. .+ .|+++|+||+|+.... .... .+. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ilv~nK~Dl~~~~-~~~~------------~~~-~~~~~ 136 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KG----KPVILVATKVDDPKHE-LYLG------------PLY-GLGFG 136 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HT----CCEEEEEECCCSGGGG-GGCG------------GGG-GGSSC
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cC----CCEEEEEECcccccch-HhHH------------HHH-hCCCC
Confidence 5677899999999997788777667776665 22 3999999999987431 1111 111 2232
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+ +..++..+ .++.++++.+.+.+
T Consensus 137 ~~--~~~Sa~~~----~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 137 DP--IPTSSEHA----RGLEELLEAIWERL 160 (161)
T ss_dssp SC--EECBTTTT----BSHHHHHHHHHHHC
T ss_pred Ce--EEEecccC----CChHHHHHHHHHhC
Confidence 33 33333333 78999999887653
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.83 E-value=2.2e-19 Score=137.91 Aligned_cols=162 Identities=10% Similarity=0.068 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|++++........ +..+.......+. .++ ..+.+|||||... +.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--TTLGASFLTKKLN-IGGKRVNLAIWDTAGQER-----------FH 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--CCCSCEEEEEEEE-SSSCEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--CccceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------hh
Confidence 345899999999999999999999776422221 1122222222222 233 3788999999542 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.........+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+....... ......+.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~ 138 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVS---------IQEAESYA 138 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccC---------HHHHHHHH
Confidence 233445678899999999985433222 3445555554433 34999999999986531111 12344555
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
...+..++..++. .+ .++.++++.|.+.+.
T Consensus 139 ~~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 139 ESVGAKHYHTSAK--QN----KGIEELFLDLCKRMI 168 (170)
T ss_dssp HHTTCEEEEEBTT--TT----BSHHHHHHHHHHHHH
T ss_pred HHcCCeEEEecCC--CC----CCHHHHHHHHHHHHh
Confidence 6656555444443 32 789999999887664
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.82 E-value=6.3e-19 Score=139.00 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=102.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
++....++|+|+|.+|||||||+|+|++......... .|.......+. ..+..+.+|||||... +
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~ 76 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFE-KGRVAFTVFDMGGAKK-----------F 76 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---CCSSEEEEEEE-ETTEEEEEEEECCSGG-----------G
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---cccceeEEEEE-eCCEEEEEEECCCCHh-----------H
Confidence 4455678999999999999999999998875331111 12223333333 5677999999999642 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc------ccCeEEEEEeCCCCCCCCcccHHhhhCCCCC
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK------VFDYMIVVFTGGNELEDNDETLEDYLGPECP 166 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~------~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~ 166 (259)
.......+..+|++|+|+|++++.+... ..++..+....... ...|+++|+||+|+... ...+++...
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~--- 151 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI--- 151 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH---
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH---
Confidence 2333455778999999999985543332 22333332211100 13599999999998765 333322210
Q ss_pred chHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 167 KPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
..+..+.+. ..+.+|..++..+ .++.++++.|.+.+.+..+
T Consensus 152 ~~~~~~~~~--~~~~~~~~Sa~~g----~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 152 LDLTTLMGD--HPFVIFASNGLKG----TGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp HTHHHHHTT--SCEEEEECBTTTT----BTHHHHHHHHHHHHHHHC-
T ss_pred hcchhhccC--CeeEEEEeeCCCc----cCHHHHHHHHHHHHHHHhc
Confidence 011111122 2344555555444 7999999999888766543
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.82 E-value=1.2e-19 Score=142.35 Aligned_cols=171 Identities=13% Similarity=0.064 Sum_probs=103.1
Q ss_pred CCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHH
Q 024985 10 SMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEF 88 (259)
Q Consensus 10 ~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~ 88 (259)
|......+...+|+++|.+|||||||+|+|++.........+.+.+.... .+.. .....+.+|||||......
T Consensus 13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~---- 86 (189)
T 2gf9_A 13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK--TVYRHDKRIKLQIWDTAGQERYRT---- 86 (189)
T ss_dssp -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEE--EEEETTEEEEEEEEECCSCCSSCC----
T ss_pred CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEE--EEEECCeEEEEEEEeCCCcHHHhh----
Confidence 33333344568999999999999999999998775322222222222222 2221 1234899999999654322
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCc
Q 024985 89 VSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPK 167 (259)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~ 167 (259)
.....+..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+.... .. ...
T Consensus 87 -------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~--~~-------~~~ 148 (189)
T 2gf9_A 87 -------ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDER--VV-------PAE 148 (189)
T ss_dssp -------SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--CS-------CHH
T ss_pred -------hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccc--CC-------CHH
Confidence 12345567899999999984433222 344555544321 134999999999986431 11 112
Q ss_pred hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.+.+..+..++. .++..+ .++.+|++.|.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~--~Sa~~g----~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 149 DGRRLADDLGFEFFE--ASAKEN----INVKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHTCEEEE--CBTTTT----BSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEE--EECCCC----CCHHHHHHHHHHHHHH
Confidence 345556666654443 333333 7899999998877654
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=4.8e-20 Score=151.74 Aligned_cols=161 Identities=13% Similarity=0.111 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIVKCI 97 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~~~~~~~~~ 97 (259)
++|+|+|.+|||||||+|+|+|...... ..+++|.......+. .++..+.+|||||+++...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~--~~pg~Tv~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFL-LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE--ECTTSSSEEEEEEEE-ETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc--CCCCceEEEEEEEEE-ECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 5899999999999999999999874332 235666666555554 5678999999999986543100 1112222221
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
. ....+|++|+|+|+++ . .....+..++.+ . ..|+++|+||+|+.... . .......+.+..+
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-~----~~pvilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg 140 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFE-L----GKPVVVALNMMDIAEHR--G--------ISIDTEKLESLLG 140 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-S----CSCEEEEEECHHHHHHT--T--------CEECHHHHHHHHC
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-c----CCCEEEEEEChhcCCcC--C--------cHHHHHHHHHHcC
Confidence 1 1257899999999984 2 222333344433 2 34999999999986431 1 1223445556666
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
.+++..++. . ..|+.+|++.|.+.
T Consensus 141 ~~vi~~SA~--~----g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVIPIQAH--K----NIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEECBGG--G----TBSHHHHHHHHHTC
T ss_pred CCEEEEECC--C----CCCHHHHHHHHHhh
Confidence 554444433 3 27999999999887
No 18
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.82 E-value=4.6e-20 Score=153.46 Aligned_cols=173 Identities=18% Similarity=0.263 Sum_probs=98.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC----CCCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCChH---
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAG----SSGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADSE--- 87 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~----~~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~~--- 87 (259)
..++|+++|.+|+|||||+|+|++...+..... ....|.......... .++ ..+.||||||+.+......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 358999999999999999999999887654321 012222222222221 233 3899999999976543321
Q ss_pred HHH----HHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985 88 FVS----KEIVKCIGM---------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN 153 (259)
Q Consensus 88 ~~~----~~~~~~~~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~ 153 (259)
.+. .++..++.. ....+|+++|+++.. .++...+..+++.+.. ..|+++|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~- 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH-
Confidence 121 112222221 123578999999766 4688888887777754 2499999999998865
Q ss_pred cccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 154 DETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+..+.. .+...+..++.+++.+++. + ..++.+|++.|.+.++
T Consensus 160 -~e~~~~~~-----~i~~~l~~~~i~v~~~sa~--~----~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 -EECQQFKK-----QIMKEIQEHKIKIYEFPET--D----DEEENKLVKKIKDRLP 203 (274)
T ss_dssp -HHHHHHHH-----HHHHHHHHTTCCCCCC-----------------CHHHHHTCS
T ss_pred -HHHHHHHH-----HHHHHHHHcCCeEEcCCCC--C----ChhHHHHHHHHhcCCC
Confidence 44443322 3455555666665545433 2 2688888888877653
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.82 E-value=5.5e-19 Score=139.00 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+++|.+|||||||+|+|++....... .++.+.......+. .++ ..+.+|||||......
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT---------- 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGCT----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhhh----------
Confidence 45689999999999999999999987653222 22333333333333 344 4799999999543221
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.....+..+|++|+|+|++++.+.. ...++..+...... ..|+++|+||+|+....... ......+.
T Consensus 81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~ 148 (196)
T 3tkl_A 81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVD---------YTTAKEFA 148 (196)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSC---------HHHHHHHH
T ss_pred -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccC---------HHHHHHHH
Confidence 1122345679999999998543322 23455555554332 34999999999987542111 12345566
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
...+..++..++. .+ .++.++++.+.+.+.+..
T Consensus 149 ~~~~~~~~~~Sa~--~g----~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 149 DSLGIPFLETSAK--NA----TNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp HHTTCCEEEECTT--TC----TTHHHHHHHHHHHHHHHC
T ss_pred HHcCCcEEEEeCC--CC----CCHHHHHHHHHHHHHHHh
Confidence 6666665555443 22 789999999888776653
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=139.18 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=100.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
....++|+++|.+|||||||+|+|++...... ..++.+.......+. .++ ..+.+|||||.....
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~---------- 72 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFR---------- 72 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCS----------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhh----------
Confidence 34568999999999999999999998875322 223333333333333 344 579999999954321
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
......+..+|++++|+|++++.+... ..++..+.... ...|+++|+||+|+.... .. .......+
T Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~-------~~~~~~~~ 139 (181)
T 3tw8_B 73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERK--VV-------ETEDAYKF 139 (181)
T ss_dssp -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGC--CS-------CHHHHHHH
T ss_pred -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhc--cc-------CHHHHHHH
Confidence 122334677899999999985433322 23344443322 235999999999976431 11 11234445
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
....+..++..++. .+ .++.+|++.|.+.+.+
T Consensus 140 ~~~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 140 AGQMGIQLFETSAK--EN----VNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHHTCCEEECBTT--TT----BSHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECC--CC----CCHHHHHHHHHHHHHH
Confidence 55555554444443 32 6899999998877654
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=1.3e-19 Score=140.28 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=97.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+++|.+|||||||+|+|++.........+.+.+..... +. .++ ..+.+|||||..... ...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~l~Dt~G~~~~~-------~~~- 81 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI--IE-VSGQKIKLQIWDTAGQERFR-------AVT- 81 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE--EE-ETTEEEEEEEEECTTGGGTC-------HHH-
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEE--EE-ECCeEEEEEEEECCCChHhh-------hhH-
Confidence 45689999999999999999999987753222222222222222 22 233 478999999954321 112
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
......+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+....... ...++.+.
T Consensus 82 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~ 147 (179)
T 1z0f_A 82 ---RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVT---------YEEAKQFA 147 (179)
T ss_dssp ---HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC---------HHHHHHHH
T ss_pred ---HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC---------HHHHHHHH
Confidence 222345699999999985433222 3444445543322 34999999999986431111 12344555
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
...+.. ++..++..+ .++.+++..+.+.+.
T Consensus 148 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 148 EENGLL--FLEASAKTG----ENVEDAFLEAAKKIY 177 (179)
T ss_dssp HHTTCE--EEECCTTTC----TTHHHHHHHHHHHHC
T ss_pred HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHh
Confidence 555544 444444443 789999998877653
No 22
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=5.7e-19 Score=139.95 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..++|+|+|.+|||||||+|+|++.........+.+.+... ..+. .. ...+.+|||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV--KTIY-RNDKRIKLQIWDTAGLER-----------YRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEE--EEEE-ETTEEEEEEEEEECCSGG-----------GHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE--EEEE-ECCeEEEEEEEECCCchh-----------hcc
Confidence 45899999999999999999999887532222222222222 2222 23 34899999999642 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+.... .. .....+.+.+
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~ 141 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDER--VV-------SSERGRQLAD 141 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSC--CS-------CHHHHHHHHH
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCccc--cc-------CHHHHHHHHH
Confidence 33445667899999999985433222 234444444321 234999999999987541 11 1123445556
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.++..++ ..++..+ .++.++++.|.+.+.+
T Consensus 142 ~~~~~~~--~~Sa~~~----~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 142 HLGFEFF--EASAKDN----INVKQTFERLVDVICE 171 (203)
T ss_dssp HHTCEEE--ECBTTTT----BSSHHHHHHHHHHHHH
T ss_pred HCCCeEE--EEECCCC----CCHHHHHHHHHHHHHH
Confidence 6665443 4443333 6788888887766544
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=8.9e-20 Score=140.05 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|++|||||||+|++++.........+.+.+......... .....+.+|||||.... ....
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~-----------~~~~ 72 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERF-----------RALA 72 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGG-----------GGGT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhh-----------hccc
Confidence 45899999999999999999999877433222222333222222111 12257899999997421 1112
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .. .......+....
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~ 141 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVR--EV-------MERDAKDYADSI 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGC--CS-------CHHHHHHHHHHT
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCcccccc--cc-------CHHHHHHHHHHc
Confidence 223456799999999985443333 3455555553222 34899999999987531 11 112344455555
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+..+ +..++..+ .++.+|++.|.+.+
T Consensus 142 ~~~~--~~~Sa~~~----~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 HAIF--VETSAKNA----ININELFIEISRRI 167 (170)
T ss_dssp TCEE--EECBTTTT----BSHHHHHHHHHHHC
T ss_pred CCEE--EEEeCCCC----cCHHHHHHHHHHHH
Confidence 5443 44443333 78999999887654
No 24
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=1.4e-18 Score=135.64 Aligned_cols=161 Identities=13% Similarity=0.095 Sum_probs=101.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|||||||+|++++... .... .|.......+. .++..+.+|||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~---~t~~~~~~~~~-~~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DTIS---PTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC---CCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc---ccCccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence 4678999999999999999999998772 2211 12223333333 467899999999953 23334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.......+|++++|+|++++.+... ...++...... ....|+++|+||+|+... ...++.. ..+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~~ 145 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQ---------EALE 145 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHH---------HHhC
Confidence 4556788999999999985543332 22223332221 123599999999998754 2222211 1111
Q ss_pred --Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 --LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 --~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+ ...+.++..++..+ .++.++++.+.+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 146 LDSIRSHHWRIQGCSAVTG----EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp GGGCCSSCEEEEECCTTTC----TTHHHHHHHHHHHHHTC
T ss_pred hhhccCCceEEEEeeCCCC----CCHHHHHHHHHHHHHhc
Confidence 11 12344566665554 79999999998888653
No 25
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.81 E-value=2.2e-19 Score=139.05 Aligned_cols=163 Identities=19% Similarity=0.187 Sum_probs=102.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
+..+|+++|++|||||||+|+|++....... ..+++|.......+. .++..+.+|||||+.......... .+.. .
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~-~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIH-IDGMPLHIIDTAGLREASDEVERI--GIER-A 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEE-ETTEEEEEEECCCCSCCSSHHHHH--HHHH-H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEE-ECCeEEEEEECCCcccchhHHHHH--HHHH-H
Confidence 4578999999999999999999987642211 223444444333333 567789999999987542211111 1111 1
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
...+..+|++++|+|++++.+..+..++..+.+.... ..|+++|+||+|+.... . ++.. .
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~-~---~~~~------------~-- 137 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGET-L---GMSE------------V-- 137 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCC-C---EEEE------------E--
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCcch-h---hhhh------------c--
Confidence 2234577999999999866665566666666654322 34999999999985431 0 0000 0
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
....++..++..+ .++.+|++.|.+.+.
T Consensus 138 ~~~~~~~~SA~~g----~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 138 NGHALIRLSARTG----EGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTEEEEECCTTTC----TTHHHHHHHHHHHC-
T ss_pred cCCceEEEeCCCC----CCHHHHHHHHHHHhh
Confidence 1233555555544 799999999877654
No 26
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.81 E-value=4.1e-19 Score=141.18 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=101.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+|+|.+|||||||+|+|++........ +..+.......+. .++ ..+.+|||||......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~---------- 72 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRT---------- 72 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHH----------
Confidence 446899999999999999999999877532221 2222222222222 333 3799999999654321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.....+..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+....... ......+.
T Consensus 73 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~ 140 (206)
T 2bcg_Y 73 -ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVE---------YDVAKEFA 140 (206)
T ss_dssp -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSC---------HHHHHHHH
T ss_pred -HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccC---------HHHHHHHH
Confidence 12345667899999999985433322 2344445443322 34999999999987541111 11334455
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...+..++ ..++..+ .++.+|+..|.+.+.+.
T Consensus 141 ~~~~~~~~--~~Sa~~g----~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 141 DANKMPFL--ETSALDS----TNVEDAFLTMARQIKES 172 (206)
T ss_dssp HHTTCCEE--ECCTTTC----TTHHHHHHHHHHHHHHH
T ss_pred HHcCCeEE--EEeCCCC----CCHHHHHHHHHHHHHHH
Confidence 55554443 3444333 78999999998877654
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.81 E-value=5.7e-19 Score=138.44 Aligned_cols=166 Identities=12% Similarity=0.096 Sum_probs=100.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-----------CcEEEEEeCCCCCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-----------GQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------~~~~~liDTPG~~~~~~ 84 (259)
.....+|+|+|.+|||||||+|+|++.........+.+.+.. ....+. .. ...+.+|||||...
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~--- 82 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVY-RANGPDGAVGRGQRIHLQLWDTAGLER--- 82 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGG---
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEE-ecCCcccccccCcEEEEEEEeCCCcHH---
Confidence 345689999999999999999999976642221111111111 011122 22 24899999999632
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP 163 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~ 163 (259)
+..........+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+.... .+
T Consensus 83 --------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~------ 145 (195)
T 3bc1_A 83 --------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQR--AV------ 145 (195)
T ss_dssp --------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGC--CS------
T ss_pred --------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--cc------
Confidence 22333455678899999999985433332 344444444321 1235999999999986431 11
Q ss_pred CCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 164 ECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
....++.+....+..++ ..++..+ .++.++++.|.+.+.+
T Consensus 146 -~~~~~~~~~~~~~~~~~--~~Sa~~~----~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 146 -KEEEARELAEKYGIPYF--ETSAANG----TNISHAIEMLLDLIMK 185 (195)
T ss_dssp -CHHHHHHHHHHHTCCEE--ECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCCCEE--EEECCCC----CCHHHHHHHHHHHHHH
Confidence 11234455555555444 3443333 7899999988776643
No 28
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.81 E-value=1.2e-18 Score=136.03 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|+|++....... .+..+.......+. .++ ..+.+|||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence 45689999999999999999999987652221 22222222222222 344 4789999999542 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
......+..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+....... ......+.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVT---------FLEASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC---------HHHHHHHH
Confidence 334556778999999999985433222 2344444443222 35999999999986431111 11234444
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+.. ++..++..+ .++.++++.+...+.+
T Consensus 143 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 143 QENELM--FLETSALTG----ENVEEAFVQCARKILN 173 (186)
T ss_dssp HHTTCE--EEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred HHcCCE--EEEecCCCC----CCHHHHHHHHHHHHHH
Confidence 554443 444444443 7899999988776644
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=3e-20 Score=142.58 Aligned_cols=162 Identities=17% Similarity=0.115 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|||||||+|++++.........+.+.+.... .+. .++ ..+.+|||||.... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~D~~G~~~~-----------~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQ--RVT-INEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE--EEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--EEE-ECCEEEEEEEEECCCChhh-----------hhh
Confidence 47899999999999999999998765322222222222222 222 233 37999999995421 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.......+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... ...+. .......+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~~~~v----~~~~~~~~~~~ 140 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQEG--GERKV----AREEGEKLAEE 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGSS--CCCCS----CHHHHHHHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccccc--cccCC----CHHHHHHHHHH
Confidence 2223457799999999985433322 2344444443322 34999999999987541 11110 11233444555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+.. ++..++..+ .++.+|+..|.+.+
T Consensus 141 ~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 141 KGLL--FFETSAKTG----ENVNDVFLGIGEKI 167 (170)
T ss_dssp HTCE--EEECCTTTC----TTHHHHHHHHHTTS
T ss_pred cCCE--EEEEeCCCC----CCHHHHHHHHHHHH
Confidence 5544 344444433 78999999876543
No 30
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.81 E-value=9.6e-19 Score=134.46 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=99.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
.....+|+++|.+|||||||+|++++..... . ..|.......+. .++..+.+|||||... +..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~---~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~-----------~~~ 66 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT--T---IPTIGFNVETVT-YKNLKFQVWDLGGLTS-----------IRP 66 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC--C---CCCSSEEEEEEE-ETTEEEEEEEECCCGG-----------GGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC--c---CCcCccceEEEE-ECCEEEEEEECCCChh-----------hhH
Confidence 3456899999999999999999998776421 1 122223333333 4578999999999642 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.....+..+|++++|+|++++.+... ...++...... ....|+++|+||+|+... ...+++. ...
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~ 133 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMA---------NSL 133 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH---------HHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHH---------HHh
Confidence 23455678899999999985543322 22223332221 123599999999998765 2222111 111
Q ss_pred --HHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 --QLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 --~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+ ...+.++..++..+ .++.++++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 134 GLPALKDRKWQIFKTSATKG----TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TGGGCTTSCEEEEECCTTTC----TTHHHHHHHHHHHHHT
T ss_pred CchhccCCceEEEECcCCCC----cCHHHHHHHHHHHHhh
Confidence 111 12234555555544 7999999999887754
No 31
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=1.5e-19 Score=160.72 Aligned_cols=189 Identities=14% Similarity=0.197 Sum_probs=119.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC---hHHH-HHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFV-SKE 92 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~---~~~~-~~~ 92 (259)
....+|+++|.+|+|||||+|+|++....... ...++|.+.....+. .++..+.||||||+...... .+.. ...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEE-ETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEE-ECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45689999999999999999999988743332 234455554434344 57789999999998643211 1111 111
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
... +...+|++|+|+|++.+++..+..++..+.+ .+ .|+++|+||+|+.+......+++.. .++..
T Consensus 271 ~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~-----~~~~~ 336 (456)
T 4dcu_A 271 ALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEE-----NIRDH 336 (456)
T ss_dssp HHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCSSHHHHHHH-----HHHHH
T ss_pred HHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cC----CCEEEEEEChhcCCCchHHHHHHHH-----HHHHh
Confidence 111 2345699999999998899999888888776 33 4999999999998653222232221 22233
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK 226 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
+...++.. ++..++..+ .++.+|++.+.+.+.....+.-+..+...+++
T Consensus 337 ~~~~~~~~-~~~~SA~~g----~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~ 385 (456)
T 4dcu_A 337 FQFLDYAP-ILFMSALTK----KRIHTLMPAIIKASENHSLRVQTNVLNDVIMD 385 (456)
T ss_dssp CGGGTTSC-EEECCTTTC----TTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cccCCCCC-EEEEcCCCC----cCHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 33223322 333444333 78999999999998887776666655555543
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.81 E-value=1.2e-19 Score=139.23 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=95.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|.+|||||||+|+|++.........+.+.+.......+. ..+..+.+|||||.... ....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGG-----------GGGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHh-----------hhhh
Confidence 35799999999999999999999766432222222222222222111 12357999999995432 1112
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
......+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+....... ......+....
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~---------~~~~~~~~~~~ 141 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVD---------FQEAQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccC---------HHHHHHHHHHc
Confidence 223457799999999985433222 3344444443222 34899999999986431111 11334444454
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+.. ++..++..+ .++.+|++.|.+.+
T Consensus 142 ~~~--~~~~Sa~~g----~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 142 SLL--FMETSAKTS----MNVNEIFMAIAKKL 167 (170)
T ss_dssp TCE--EEECCTTTC----TTHHHHHHHHHHTS
T ss_pred CCe--EEEEeCCCC----CCHHHHHHHHHHHH
Confidence 443 444444433 78999999987654
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.81 E-value=3.5e-19 Score=138.30 Aligned_cols=164 Identities=18% Similarity=0.142 Sum_probs=98.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|+|||||+|++++.........+.+.+.......+. .....+.+|||||.... ...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~ 77 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERY-----------HSL 77 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGG-----------GGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhh-----------hhh
Confidence 345899999999999999999999877533222222222222222111 11347999999995421 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
.......+|++|+|+|++++.+.. ...++..+...... ..|+++|+||+|+....... ....+.+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~---------~~~~~~~~~~ 146 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVT---------AEDAQTYAQE 146 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSC---------HHHHHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCC---------HHHHHHHHHH
Confidence 222345679999999998544322 23455555543222 34899999999987541111 1234445555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+.. ++..++..+ .++.+|++.|.+.+.
T Consensus 147 ~~~~--~~~~Sa~~g----~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 147 NGLF--FMETSAKTA----TNVKEIFYEIARRLP 174 (181)
T ss_dssp TTCE--EEECCSSSC----TTHHHHHHHHHHTCC
T ss_pred cCCE--EEEEECCCC----CCHHHHHHHHHHHHH
Confidence 5544 444444443 789999998877553
No 34
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.81 E-value=3.3e-19 Score=148.29 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~~~~~~~~ 96 (259)
.++|+++|.+|||||||+|+|+|... ..+ ..+++|.......+. ..+..+.+|||||+.+...... ...+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~-~~~g~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVG-NWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEE-ECTTSSSEEEEEEEE-CSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeeEEEEEEEEE-eCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47999999999999999999999874 222 245666666655555 4677999999999987542110 111222222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
. .....+|++|+|+|+++ . .....+...+.+. + .|+++|+||+|+... ..+ ......+.+..
T Consensus 80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~--~~~--------~~~~~~l~~~l 141 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNI--------RIEIDALSARL 141 (274)
T ss_dssp H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-T----CCEEEEEECHHHHHH--TTE--------EECHHHHHHHH
T ss_pred H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-C----CCEEEEEECccchhh--hhH--------HHHHHHHHHhc
Confidence 1 12357899999999983 2 2334455555542 3 399999999997643 111 12344555666
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC--CCCCCHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG--GQPYSDEIFAE 223 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~--~~~~~~~~~~~ 223 (259)
+.+++. .++.. ..|+.+|++.|.+.+.... ...|..++...
T Consensus 142 g~~~i~--~SA~~----g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~ 184 (274)
T 3i8s_A 142 GCPVIP--LVSTR----GRGIEALKLAIDRYKANENVELVHYAQPLLNE 184 (274)
T ss_dssp TSCEEE--CCCGG----GHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHH
T ss_pred CCCEEE--EEcCC----CCCHHHHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence 655444 34333 3899999999988775432 22355544433
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=1e-19 Score=160.92 Aligned_cols=190 Identities=14% Similarity=0.188 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~~~ 93 (259)
...++|+++|++|||||||+|+|++....... ...++|.+.....+. .++..+.||||||+.+..... +.+. .+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~e~~~-~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVYETTEKYS-VL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEE-ETTEEEEETTHHHHTCBTTBCCCCSHHH-HH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEE-ECCeEEEEEECCCcCcCccccchHHHHH-HH
Confidence 35689999999999999999999998753222 234555555444444 577889999999985432210 1111 11
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.. ..++..+|++|+|+|++++.+.++..++..+.. .+ .|+++|+||+|+.+......+++.. .+...+
T Consensus 250 -~~-~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~~~~~~~~~~~-----~~~~~l 317 (436)
T 2hjg_A 250 -RA-LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEE-----NIRDHF 317 (436)
T ss_dssp -HH-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCTTHHHHHHH-----HHHHHC
T ss_pred -HH-HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-cC----CcEEEEEECccCCCcchHHHHHHHH-----HHHHhc
Confidence 11 112345699999999998899888877776654 23 4999999999998652111222211 122222
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK 226 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
....+.. ++..++..+ .++.+|++.+.+.+.....+.-+..+...+++
T Consensus 318 ~~~~~~~-~~~~SA~tg----~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~ 365 (436)
T 2hjg_A 318 QFLDYAP-ILFMSALTK----KRIHTLMPAIIKASENHSLRVQTNVLNDVIMD 365 (436)
T ss_dssp GGGTTSC-EEECCTTTC----TTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred ccCCCCC-EEEEecccC----CCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 2222322 333344333 78999999999988877665555555544443
No 36
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.81 E-value=3.4e-19 Score=138.30 Aligned_cols=168 Identities=14% Similarity=0.082 Sum_probs=93.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
.....+|+++|.+|||||||+|++++........ +..+.......+... ....+.+|||||.. .+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~~ 71 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK--ATIGADFLTKEVTVDGDKVATMQVWDTAGQE-----------RF 71 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccC--CccceEEEEEEEEEcCCcEEEEEEEECCCCh-----------Hh
Confidence 3456899999999999999999999876422211 112222222222221 13478999999943 22
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
..........+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+...... .......
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--------v~~~~~~ 143 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI--------VSEKSAQ 143 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC--------SCHHHHH
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc--------CCHHHHH
Confidence 2333456678899999999985433222 3344444443320 123499999999998643100 0112233
Q ss_pred HHHHH-cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 171 EILQL-CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+... .+..++..++. .+ .++.++++.|.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 144 ELAKSLGDIPLFLTSAK--NA----INVDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHHTTSCCEEEEBTT--TT----BSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecC--CC----CCHHHHHHHHHHHHHH
Confidence 44442 22344444433 32 6899999988776543
No 37
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-18 Score=134.15 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|+|++........ .+..+.......+. .++ ..+.+|||||... +.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~-----------~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQER-----------FR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEE-ETTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence 345899999999999999999999877532211 12222222222222 344 3789999999542 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.........+|++++|+|++++.+..+ ..++..+..... ...|+++|+||+|+....... ......+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~ 143 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVK---------REDGEKLA 143 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSC---------HHHHHHHH
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccC---------HHHHHHHH
Confidence 223445567899999999985433222 344555555332 234999999999987541111 11334455
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+..++ ..++..+ .++.++++.+.+.+.+
T Consensus 144 ~~~~~~~~--~~Sa~~~----~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 144 KEYGLPFM--ETSAKTG----LNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHTCCEE--ECCTTTC----TTHHHHHHHHHHHHHC
T ss_pred HHcCCeEE--EEeCCCC----CCHHHHHHHHHHHHHH
Confidence 55554443 3444333 7899999998887754
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.4e-19 Score=142.44 Aligned_cols=164 Identities=16% Similarity=0.060 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|+|||||+|+|++...........+.+......... .....+.+|||||..... ..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 88 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFH-----------SL 88 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGG-----------GG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhH-----------hh
Confidence 456899999999999999999999877432222223333322222211 234589999999954321 11
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++|+|+|+++..+... ..++..+..... ...|+++|+||+|+....... ....+.+...
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~---------~~~~~~~~~~ 157 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVP---------LKDAKEYAES 157 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHT
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccC---------HHHHHHHHHH
Confidence 1223456799999999985433222 344555544322 134999999999986421111 1234455555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+..+ +..++..+ .++.+|++.|.+.+.
T Consensus 158 ~~~~~--~~~Sa~~~----~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 158 IGAIV--VETSAKNA----INIEELFQGISRQIP 185 (192)
T ss_dssp TTCEE--EECBTTTT----BSHHHHHHHHHHTCC
T ss_pred cCCEE--EEEeCCCC----cCHHHHHHHHHHHHH
Confidence 55443 44444333 789999999887654
No 39
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=1.7e-19 Score=159.68 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
++|+++|++|||||||+|+|++...... ...+++|.+.....+. .++..+.+|||||+.... ...+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVE-WYGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEE-ETTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEE-ECCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 5899999999999999999999874322 2346677776666555 578899999999987421 11112234444455
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN- 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (259)
++..+|++|+|+|++.+++..+..+.+++.+ .+ .|+++|+||+|+... .... ...++. .++.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-~~----~p~ilv~NK~D~~~~----~~~~-------~~~~~~-~lg~~ 140 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRK-ST----VDTILVANKAENLRE----FERE-------VKPELY-SLGFG 140 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-HT----CCEEEEEESCCSHHH----HHHH-------THHHHG-GGSSC
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEeCCCCccc----cHHH-------HHHHHH-hcCCC
Confidence 6678899999999988888888777777765 23 499999999996421 0100 001221 2332
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.++.+++. .+ .|+.+|++.+.+.+++.
T Consensus 141 ~~~~iSA~--~g----~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 141 EPIPVSAE--HN----INLDTMLETIIKKLEEK 167 (439)
T ss_dssp SCEECBTT--TT----BSHHHHHHHHHHHHHHT
T ss_pred CEEEEecc--CC----CCHHHHHHHHHHhcccc
Confidence 33333333 32 78999999998888753
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.81 E-value=1.9e-19 Score=138.22 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=97.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|+|||||+|++++....... .++.+.......+. .++ ..+.+|||||.......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~---------- 68 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRTI---------- 68 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSCC----------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhhh----------
Confidence 3579999999999999999999987642221 12222223223233 233 47899999996432211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.......+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .. ......+.+
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~ 135 (170)
T 1g16_A 69 -TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRV-VT---------ADQGEALAK 135 (170)
T ss_dssp -CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTCC-SC---------HHHHHHHHH
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcCc-cC---------HHHHHHHHH
Confidence 1223456799999999984433222 3455555553322 34999999999984321 11 123345555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+..++..++ ..+ .++.++++.+.+.+.+.
T Consensus 136 ~~~~~~~~~Sa--~~~----~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 136 ELGIPFIESSA--KND----DNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHTCCEEECBT--TTT----BSHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEEEC--CCC----CCHHHHHHHHHHHHHHH
Confidence 55655444443 332 68999999998877653
No 41
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=5.7e-19 Score=146.60 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=106.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.++|+|+|++|||||||+|+|+|... ..+ ..++.|.......+. ..+..+.+|||||+++....... ..+... .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~-~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVG-NWPGVTVEKKEGIME-YREKEFLVVDLPGIYSLTAHSID--ELIARN-F 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEE-ECTTSSCEEEEEEEE-ETTEEEEEEECCCCSCCCSSCHH--HHHHHH-H
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeEEEeeEEEEE-ECCceEEEEeCCCccccccCCHH--HHHHHH-h
Confidence 47999999999999999999999875 222 245566655555444 56778999999998865432211 111111 1
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
.....+|++++|+|+++ . .....++..+.+. + ..|+++|+||+|+... . ........+.+..+.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~~~--~--------~~~~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-E---VKNIILVLNKFDLLKK--K--------GAKIDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-T---CCSEEEEEECHHHHHH--H--------TCCCCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-C---CCCEEEEEEChhcCcc--c--------ccHHHHHHHHHHcCC
Confidence 12357899999999983 2 2223333333332 2 1499999999997632 1 111235566666665
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
.++.. ++..+ .|+.+|++.+...+....
T Consensus 141 ~~~~~--Sa~~g----~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 141 PVIPT--NAKKG----EGVEELKRMIALMAEGKV 168 (271)
T ss_dssp CEEEC--BGGGT----BTHHHHHHHHHHHHHTCC
T ss_pred cEEEE--EeCCC----CCHHHHHHHHHHHHhccc
Confidence 54433 33333 799999999999887653
No 42
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.80 E-value=3.4e-18 Score=140.87 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+|+|.+|||||||+|+|+|...... ..+++|.......+. ..+..+.+|||||.+....... .+.+....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~--~~pg~tv~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVA--NWPGVTVEKKEGVFT-YKGYTINLIDLPGTYSLGYSSI--DEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEE-ETTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceEEEEEEEEE-ECCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence 357899999999999999999999875322 234666665555444 4678999999999886543221 11121111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
. ....+|++++|+|+++ +.. ...++..+.+ .+ .|+++|+||+|+.... ........+.+..+
T Consensus 79 ~-~~~~~d~ii~V~D~t~-~~~-~~~~~~~l~~-~~----~pvilv~NK~Dl~~~~----------~i~~~~~~l~~~lg 140 (258)
T 3a1s_A 79 L-LKGDADLVILVADSVN-PEQ-SLYLLLEILE-ME----KKVILAMTAIDEAKKT----------GMKIDRYELQKHLG 140 (258)
T ss_dssp H-HHSCCSEEEEEEETTS-CHH-HHHHHHHHHT-TT----CCEEEEEECHHHHHHT----------TCCBCHHHHHHHHC
T ss_pred H-hhcCCCEEEEEeCCCc-hhh-HHHHHHHHHh-cC----CCEEEEEECcCCCCcc----------chHHHHHHHHHHcC
Confidence 1 1147799999999983 322 2233333433 22 4999999999976431 11223556666666
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+++.. ++..+ .|+.+|++.+.+....
T Consensus 141 ~~vi~~--SA~~g----~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 141 IPVVFT--SSVTG----EGLEELKEKIVEYAQK 167 (258)
T ss_dssp SCEEEC--CTTTC----TTHHHHHHHHHHHHHS
T ss_pred CCEEEE--EeeCC----cCHHHHHHHHHHHhhc
Confidence 554443 33333 7999999999887763
No 43
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.80 E-value=1.9e-18 Score=136.50 Aligned_cols=160 Identities=12% Similarity=0.100 Sum_probs=96.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC----------------------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG---------------------------- 68 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~---------------------------- 68 (259)
....+|+++|.+|||||||+|+|++........ +..........+. .++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEE-TTC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEE-ecCcccccccccccccccccccccccccccc
Confidence 356899999999999999999999887432111 1111112111111 122
Q ss_pred -----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccc
Q 024985 69 -----------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKV 136 (259)
Q Consensus 69 -----------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~ 136 (259)
..+.||||||...... ........+|++|+|+|++++.+..+ ..++..+....+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--- 147 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--- 147 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence 6799999999543221 11223456799999999985533333 334444444333
Q ss_pred cCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 137 FDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 137 ~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.|+++|+||+| ....... ...+..++...+..++..++. .+ .++.+|++.|.+.+.+
T Consensus 148 -~piilv~NK~D-~~~~~~~---------~~~~~~~~~~~~~~~~~~Sa~--~~----~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 -YIIILVANKID-KNKFQVD---------ILEVQKYAQDNNLLFIQTSAK--TG----TNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CEEEEEEECTT-CC-CCSC---------HHHHHHHHHHTTCEEEEECTT--TC----TTHHHHHHHHHHHHHH
T ss_pred -CcEEEEEECCC-cccccCC---------HHHHHHHHHHcCCcEEEEecC--CC----CCHHHHHHHHHHHHHH
Confidence 59999999999 4321111 123445555555544444443 33 7899999998877654
No 44
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.80 E-value=5.8e-19 Score=137.45 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|++++....... .++.+.......+. .++ ..+.+|||||... +.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~ 71 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQER-----------FR 71 (183)
T ss_dssp SEEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEE-ETTEEEEEEEEEC------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEE-ECCEEEEEEEEcCCCChh-----------hh
Confidence 34689999999999999999999976542111 11122222222232 344 5799999999542 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
......+..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+....... ......+.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~---------~~~~~~~~ 140 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVS---------KERGEKLA 140 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSC---------HHHHHHHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCC---------HHHHHHHH
Confidence 233455678899999999985433222 2344444443222 34999999999987541111 12344555
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+.. ++..++..+ .++.+++..|.+.+.+
T Consensus 141 ~~~~~~--~~~~Sa~~~----~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 141 LDYGIK--FMETSAKAN----INVENAFFTLARDIKA 171 (183)
T ss_dssp HHHTCE--EEECCC-------CCHHHHHHHHHHHHHH
T ss_pred HHcCCe--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence 555544 444444443 7899999988776653
No 45
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=139.85 Aligned_cols=164 Identities=15% Similarity=0.050 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+|+|.+|||||||+|+|++.........+.+.+.......+. ..+..+.+|||||....... .
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-------~---- 91 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAI-------T---- 91 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTT-------H----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhh-------h----
Confidence 35899999999999999999999877532222222222222211111 12347899999997653221 1
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+.... .. .....+.+....
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~ 160 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAR--EV-------PTEEARMFAENN 160 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGC--CS-------CHHHHHHHHHHT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCccccc--cc-------CHHHHHHHHHHc
Confidence 123456799999999984433221 234444433221 235999999999986431 10 112344455555
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+..++.. ++..+ .++.+|++.|.+.+.+
T Consensus 161 ~~~~~~~--Sa~~~----~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 161 GLLFLET--SALDS----TNVELAFETVLKEIFA 188 (193)
T ss_dssp TCEEEEE--CTTTC----TTHHHHHHHHHHHHHH
T ss_pred CCEEEEE--eCCCC----CCHHHHHHHHHHHHHH
Confidence 5444444 33333 7899999988776643
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=1.4e-18 Score=134.46 Aligned_cols=165 Identities=16% Similarity=0.077 Sum_probs=98.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|++|||||||+|++++........ +..+.......+. .++ ..+.+|||||... +.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLE-VDGHFVTMQIWDTAGQER-----------FR 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEE-ETTEEEEEEEEECCCCGG-----------GH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEE-ECCEEEEEEEEeCCCchh-----------hh
Confidence 346899999999999999999999776422211 1122222222222 344 3899999999532 23
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
.........+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.... .. ......
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~---------~~~~~~ 140 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VS---------TEEAQA 140 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SC---------HHHHHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cC---------HHHHHH
Confidence 334456678899999999985433222 3345555443321 1234999999999987321 11 112334
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+...... ..++..++..+ .++.++++.+.+.+.+
T Consensus 141 ~~~~~~~-~~~~~~Sa~~~----~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 141 WCRDNGD-YPYFETSAKDA----TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHTTC-CCEEECCTTTC----TTHHHHHHHHHHHHHT
T ss_pred HHHhcCC-ceEEEEeCCCC----CCHHHHHHHHHHHHHh
Confidence 4442222 22444444443 7899999998777654
No 47
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.80 E-value=3e-18 Score=132.17 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=92.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+++|++|||||||+|+|++...... ..+.+.+...... . .++ ..+.+|||||.... ...
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~D~~g~~~~---------~~~ 68 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTL--T-VDGEDTTLVVVDTWEAEKL---------DKS 68 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEE--E-ETTEEEEEEEECCC----------------C
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEE--E-ECCEEEEEEEEecCCCCcc---------chh
Confidence 4568999999999999999999998875322 2233333322222 2 333 37899999996531 011
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
......+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.....-.. ...+.+.
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~---------~~~~~~~ 138 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSV---------EEGRACA 138 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCH---------HHHHHHH
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCH---------HHHHHHH
Confidence 112334567899999999984433222 23444444321 112359999999999875411111 1223344
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+.. ++..++..+ .++.+|++.|.+.+..
T Consensus 139 ~~~~~~--~~~~Sa~~g----~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 139 VVFDCK--FIETSATLQ----HNVAELFEGVVRQLRL 169 (175)
T ss_dssp HHHTSE--EEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred HHcCCe--EEEEecCCC----CCHHHHHHHHHHHHHH
Confidence 444443 344444333 7899999998776643
No 48
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.6e-19 Score=139.92 Aligned_cols=165 Identities=12% Similarity=0.045 Sum_probs=100.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+|+|.+|||||||+|+|++.........+.+.+......... ..+..+.||||||.. .+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~-----------~~~~~~ 89 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQE-----------RYRTIT 89 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHH-----------HCHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChH-----------HHHHHH
Confidence 45899999999999999999999766422211122222222222111 234589999999932 233333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+..+|++|+|+|++++.+.. ...++..+...... ..|+++|+||+|+...... .....+.+....
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~---------~~~~~~~~~~~~ 158 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVV---------PTEKGQLLAEQL 158 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCS---------CHHHHHHHHHHH
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccccc---------CHHHHHHHHHHc
Confidence 44566789999999998442222 23455555543322 3499999999998643111 112344555555
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+..+ |..++..+ .++.++++.|.+.+.+.
T Consensus 159 ~~~~--~~~Sa~~~----~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 159 GFDF--FEASAKEN----ISVRQAFERLVDAICDK 187 (191)
T ss_dssp TCEE--EECBTTTT----BSHHHHHHHHHHHHHHH
T ss_pred CCeE--EEEECCCC----CCHHHHHHHHHHHHHHh
Confidence 5544 44444333 78999999988877654
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=6.3e-19 Score=140.58 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=97.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
....++|+++|++|||||||+|+|++....... .++.+.......+. .++ ..+.+|||||......
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~--------- 84 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRT--------- 84 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTC---------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHH---------
Confidence 345689999999999999999999977642222 12223233333333 344 4799999999643221
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
.....+..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... .. .......+
T Consensus 85 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~--------~~~~~~~~ 150 (213)
T 3cph_A 85 --ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VV--------TADQGEAL 150 (213)
T ss_dssp --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSC--CS--------CHHHHHHH
T ss_pred --HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc--cc--------CHHHHHHH
Confidence 11223457799999999984433222 3455555543322 3499999999998432 11 11233445
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
....+..++..++ ..+ .++.+|+..|.+.+.+
T Consensus 151 ~~~~~~~~~~~Sa--~~~----~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 151 AKELGIPFIESSA--KND----DNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHTCCEEECBT--TTT----BSSHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeC--CCC----CCHHHHHHHHHHHHHH
Confidence 5555554444443 332 6889999888776654
No 50
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=140.47 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=95.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
......+|+++|.+|||||||+|+|++........ +..+.......+. .++ ..+.+|||||.... ...
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~-------~~~ 91 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVE-LRGKKIRLQIWDTAGQERF-------NSI 91 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGGG-------HHH
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEE-ECCeEEEEEEEeCCCcHHH-------HHH
Confidence 34456899999999999999999999877532221 2222233333333 333 47899999995421 111
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
.. ..+..+|++|+|+|++++.+..+ ..++..+...... ..|+++|+||+|+.... .+ .......
T Consensus 92 ~~----~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~--~v-------~~~~~~~ 156 (192)
T 2il1_A 92 TS----AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDR--EI-------TRQQGEK 156 (192)
T ss_dssp HH----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGC--CS-------CHHHHHH
T ss_pred HH----HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccccc--cc-------CHHHHHH
Confidence 12 22335699999999985443333 3344555543222 34999999999986431 11 0112334
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+.....+ ..++..++..+ .++.++++.|.+.+.+
T Consensus 157 ~~~~~~~-~~~~~~SA~~g----~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 157 FAQQITG-MRFCEASAKDN----FNVDEIFLKLVDDILK 190 (192)
T ss_dssp HHHTSTT-CEEEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred HHHhcCC-CeEEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence 4444322 23444444433 7899999998776653
No 51
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.80 E-value=1e-18 Score=136.55 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|||||||+|+|++...... ..+++......... .++. .+.+|||||....... ...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAM-------RDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC---CCTTCCEEEEEEEE-ETTEEEEEEEEECCCC---CTT-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCchheEEEEEE-ECCcEEEEEEEECCCcHHHHHH-------HHH
Confidence 458999999999999999999997764221 12222222222222 3444 4778999996543221 111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+... .. .......+..
T Consensus 72 ----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~--------~~~~~~~~~~ 136 (189)
T 4dsu_A 72 ----YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TV--------DTKQAQDLAR 136 (189)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SS--------CHHHHHHHHH
T ss_pred ----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--cc--------CHHHHHHHHH
Confidence 1223599999999985433222 334444444222 223599999999998743 11 1223445566
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+..++..++ ..+ .|+.+|+..+.+.+.+
T Consensus 137 ~~~~~~~~~Sa--~~g----~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 137 SYGIPFIETSA--KTR----QGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHTCCEEECCT--TTC----TTHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeC--CCC----CCHHHHHHHHHHHHHH
Confidence 66655444443 333 7899999998887754
No 52
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.6e-18 Score=137.66 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=99.8
Q ss_pred CCCCCCCCC---CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCC
Q 024985 9 DSMPTSPSN---AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSS 83 (259)
Q Consensus 9 ~~~~~s~~~---~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~ 83 (259)
.|++..... ..++|+++|.+|||||||+|+|++....... .+..+.+.....+. .++ ..+.+|||||..
T Consensus 13 ~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~--- 86 (201)
T 2ew1_A 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-INGEKVKLQIWDTAGQE--- 86 (201)
T ss_dssp ---------CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG---
T ss_pred cccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcH---
Confidence 455443332 3589999999999999999999977642211 12222222222233 344 378999999953
Q ss_pred CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985 84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG 162 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~ 162 (259)
.+.......+..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+.... .+
T Consensus 87 --------~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~--~v----- 149 (201)
T 2ew1_A 87 --------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERR--EV----- 149 (201)
T ss_dssp --------GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC--SS-----
T ss_pred --------HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc--cc-----
Confidence 233344556788999999999984433221 344555554322 234999999999986431 11
Q ss_pred CCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 163 PECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.......+....+..+ |..++..+ .++.+|+..+...+.+
T Consensus 150 --~~~~~~~~~~~~~~~~--~~~Sa~~g----~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 150 --SQQRAEEFSEAQDMYY--LETSAKES----DNVEKLFLDLACRLIS 189 (201)
T ss_dssp --CHHHHHHHHHHHTCCE--EECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCEE--EEEeCCCC----CCHHHHHHHHHHHHHH
Confidence 0112334444555443 44444433 7899999988776654
No 53
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.79 E-value=2e-18 Score=132.07 Aligned_cols=162 Identities=17% Similarity=0.041 Sum_probs=86.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|.+|||||||+|++++...... ....+.+. .....+. .....+.+|||||.... .....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~-----------~~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVD-GEEASLMVYDIWEQDGG-----------RWLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEET-TEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEEC-CEEEEEEEEECCCCccc-----------hhhhh
Confidence 47899999999999999999998765322 12223332 2111111 12347899999995432 12223
Q ss_pred hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
..+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.+..... ......+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~ 137 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVS---------VDEGRACAVVFD 137 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSC---------HHHHHHHHHHTT
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccC---------HHHHHHHHHHhC
Confidence 34567799999999984433222 23333343321 11235999999999987542111 112334444444
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.. ++..++..+ .++.++++.+.+.+.+
T Consensus 138 ~~--~~~~Sa~~~----~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 138 CK--FIETSAALH----HNVQALFEGVVRQIRL 164 (166)
T ss_dssp CE--EEECBGGGT----BSHHHHHHHHHHHHHH
T ss_pred Cc--EEEeccCCC----CCHHHHHHHHHHHHHh
Confidence 43 444444433 7899999998887654
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=143.62 Aligned_cols=167 Identities=14% Similarity=0.074 Sum_probs=93.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|+|++.........+.+.+..... +. .++ ..+.||||||.... ......
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~l~i~Dt~G~~~~-------~~~~~~ 96 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKT--LI-VDGERTVLQLWDTAGQERF-------RSIAKS 96 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEE--EE-ETTEEEEEEEEECTTCTTC-------HHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEE--EE-ECCEEEEEEEEECCCCcch-------hhhHHH
Confidence 4689999999999999999999987642221112222222222 22 233 46999999996532 111222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.+..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ...+. ...-.......+..
T Consensus 97 ----~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~~~ 167 (199)
T 2p5s_A 97 ----YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKLAM 167 (199)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHHHH
T ss_pred ----HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--ccccc-ccccCHHHHHHHHH
Confidence 2334599999999985433322 3445555543322 3499999999998632 10000 00011123344555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+.. ++..++..+ .++.+++..|.+.+.
T Consensus 168 ~~~~~--~~~~SA~~g----~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 TYGAL--FCETSAKDG----SNIVEAVLHLAREVK 196 (199)
T ss_dssp HHTCE--EEECCTTTC----TTHHHHHHHHHHHHT
T ss_pred HcCCe--EEEeeCCCC----CCHHHHHHHHHHHHH
Confidence 55544 344444433 789999998877654
No 55
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=138.19 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|++++....... .+..+.......+. .++ ..+.+|||||... +..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLE-IQGKRVKLQIWDTAGQER-----------FRT 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEE-ETTEEEEEEEECCTTCGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------HHH
Confidence 3589999999999999999999877642111 11111122222222 344 4899999999542 122
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+....... ...++.+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~---------~~~~~~~~~ 162 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVS---------LAEAQSLAE 162 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC---------HHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccC---------HHHHHHHHH
Confidence 22334567899999999984333221 3445555443322 34999999999986431011 123445555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
..+.. .+|..++..+ .++.+++..|.+.+.+..+
T Consensus 163 ~~~~~-~~~~~SA~~g----~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 163 HYDIL-CAIETSAKDS----SNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp HTTCS-EEEECBTTTT----BSHHHHHHHHHHHHHHHTT
T ss_pred HcCCC-EEEEEeCCCC----CCHHHHHHHHHHHHHHhcc
Confidence 55541 2344444333 7899999998887765543
No 56
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=137.17 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|||||||+|+|++...+.... ..|.......+. .++..+.+|||||.... ...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~ 83 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFK-SSSLSFTVFDMSGQGRY-----------RNL 83 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEE-CSSCEEEEEEECCSTTT-----------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEE-ECCEEEEEEECCCCHHH-----------HHH
Confidence 356899999999999999999999887322221 223333333333 46789999999996532 112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL- 173 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~- 173 (259)
....+..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ...++ +...+
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~---------~~~~~~ 152 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVK---------VSQLLC 152 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHH---------HHHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHH---------HHHHhC
Confidence 2344567899999999984422222 1233333222110 023599999999998754 22221 22222
Q ss_pred -HHcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 -QLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 -~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+. ..+.++..++..+ .++.+|++.|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 LENIKDKPWHICASDAIKG----EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGGCCSSCEEEEECBTTTT----BTHHHHHHHHHHHC-
T ss_pred hhhccCCceEEEEccCCCC----cCHHHHHHHHHHHHH
Confidence 1111 2344555555444 789999999887654
No 57
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.79 E-value=7.8e-19 Score=137.95 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|+|++.........+.+.+ .....+. .++ ..+.+|||||.......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~---------- 86 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVN-IDGKQIKLQIWDTAGQESFRSI---------- 86 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEE-ETTEEEEEEEECCTTGGGTSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEE-ECCEEEEEEEEECCCchhhhhh----------
Confidence 45799999999999999999999876532221112222 2222222 333 47899999996432211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+..+|++|+|+|+++..+... ..++..+..... ...|+++|+||+|+.... .+ .......+..
T Consensus 87 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~~ 154 (191)
T 2a5j_A 87 -TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRR--DV-------KREEGEAFAR 154 (191)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--CS-------CHHHHHHHHH
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCcc--cc-------CHHHHHHHHH
Confidence 1123456799999999984433222 334444544322 234999999999986431 11 1123445555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+..++..++. .+ .++.+++..|.+.+.+
T Consensus 155 ~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 155 EHGLIFMETSAK--TA----CNVEEAFINTAKEIYR 184 (191)
T ss_dssp HHTCEEEEECTT--TC----TTHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCC--CC----CCHHHHHHHHHHHHHH
Confidence 555554444443 33 7899999988776543
No 58
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.79 E-value=9.9e-19 Score=138.81 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=97.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
.....+|+++|.+|||||||+|+|++....... ....+.......+. .++ ..+.+|||||.....
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~---------- 71 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVM-VDDRLVTMQIWDTAGQERFQ---------- 71 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-SSSCEEEEEEEEECSSGGGS----------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHH----------
Confidence 345689999999999999999999987753221 22222233333232 233 479999999954321
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
......+..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ... .....
T Consensus 72 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~--------~~~~~ 140 (207)
T 1vg8_A 72 -SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVA--------TKRAQ 140 (207)
T ss_dssp -CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSC--------HHHHH
T ss_pred -HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccC--------HHHHH
Confidence 112334567899999999985433222 2344444443321 023499999999998733 111 11233
Q ss_pred HHHH-HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 171 EILQ-LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+.. ..+.. +|..++..+ .++.+|++.|.+.+.+
T Consensus 141 ~~~~~~~~~~--~~~~Sa~~g----~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 141 AWCYSKNNIP--YFETSAKEA----INVEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHTTSCC--EEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCce--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence 3333 22223 344444333 7899999998877654
No 59
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2.5e-18 Score=134.51 Aligned_cols=162 Identities=10% Similarity=0.076 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|||||||+|++++...... ..+.+ .....+. .++..+.+|||||...... .
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~----~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIV-INNTRFLMWDIGGQESLRS-----------S 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC----SSCEEEE-ETTEEEEEEECCC----CG-----------G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCCc----cceEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence 4568999999999999999999997765322 11122 1222223 4678999999999753221 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++|+|+|++++-+... ..++..+..... ....|+++|+||+|+... ...++ +...+..
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~---------i~~~~~~ 144 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAE---------ISQFLKL 144 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHH---------HHHHHTG
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHH---------HHHHhCh
Confidence 1223457799999999985543332 223333322110 123599999999998754 22221 1111211
Q ss_pred --c-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 176 --C-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 176 --~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+ ...+.++..++..+ .++.+|++.|.+.+...
T Consensus 145 ~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 145 TSIKDHQWHIQACCALTG----EGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp GGCCSSCEEEEECBTTTT----BTHHHHHHHHHHHHCC-
T ss_pred hhhcCCCcEEEEccCCCC----cCHHHHHHHHHHHHHHH
Confidence 1 12334555555444 79999999998876543
No 60
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=1.8e-18 Score=146.45 Aligned_cols=179 Identities=12% Similarity=0.126 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceee---EE---------------------------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC---EM--------------------------------- 60 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~---~~--------------------------------- 60 (259)
...++|+++|.+|||||||+|+|+|...++.+.. .+|..+ ..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~--~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG--IVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIR 99 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC----------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCC--ceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHH
Confidence 3457999999999999999999999886433221 011110 00
Q ss_pred -----------------------EEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcCCCccEEEEEEeC-C
Q 024985 61 -----------------------QRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAKDGIHAVLLVFSV-R 114 (259)
Q Consensus 61 -----------------------~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~-~ 114 (259)
..+....+..+.||||||+...... ...+...+......+...+|++++|+|+ +
T Consensus 100 ~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 100 EEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 0011123468999999998752210 0112223444444455577999999997 4
Q ss_pred CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccc
Q 024985 115 NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATR 193 (259)
Q Consensus 115 ~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (259)
..+...+ ..+++.+.. ...|+++|+||+|+.... ....+++.. ....++..++.+..........
T Consensus 180 ~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~~sa~~~~~ 245 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVINRSQEDIIA 245 (315)
T ss_dssp SCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCCCCHHHHSS
T ss_pred cchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEecCChhhhcc
Confidence 4454333 345554432 234999999999998652 112222211 0011112344333332211112
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 024985 194 TEQVGKLISLVNSVILEN 211 (259)
Q Consensus 194 ~~~i~eLl~~i~~~~~~~ 211 (259)
..++.+|++.+.++++..
T Consensus 246 ~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKNH 263 (315)
T ss_dssp SCCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 478999999999998763
No 61
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=138.20 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=92.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|+|++........ +..+.......+. .++ ..+.||||||.. .+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVN-VGGKTVKLQIWDTAGQE-----------RFRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHH-----------HHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEE-ECCeeeEEEEEcCCCcH-----------hHHH
Confidence 45899999999999999999999876532221 2222222222222 344 589999999942 1211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+....... ......+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVT---------FLEASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccC---------HHHHHHHHH
Confidence 22234557799999999985433222 334444444322 234999999999986431111 112334445
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+..++.. ++..+ .++.+++..|.+.+.+
T Consensus 159 ~~~~~~~~~--SA~~g----~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 159 ENELMFLET--SALTG----ENVEEAFLKCARTILN 188 (200)
T ss_dssp HTTCEEEEE--CTTTC----TTHHHHHHHHHHHHHH
T ss_pred HcCCEEEEE--eCCCC----CCHHHHHHHHHHHHHH
Confidence 545444433 33333 7899999988776643
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.79 E-value=2.5e-18 Score=131.32 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|||||||+|++++....... .+++......... .++. .+.+|||||..... . ....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~----~---~~~~- 70 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY---DPTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFA----S---MRDL- 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC---CTTCCEEEEEEEE-ETTEEEEEEEEECCCTTCCH----H---HHHH-
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC---CCCcceeEEEEEE-ECCEEEEEEEEECCCchhhH----H---HHHH-
Confidence 479999999999999999999977642211 1122122122222 3443 58999999965321 1 1111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.... .. .......+...
T Consensus 71 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~ 137 (167)
T 1kao_A 71 ---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESER--EV-------SSSEGRALAEE 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHH
T ss_pred ---HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccc--cC-------CHHHHHHHHHH
Confidence 2234599999999984433222 334444444322 1235999999999986431 11 11133445555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+..++..++. . ..++.+|++.|.+.+.+
T Consensus 138 ~~~~~~~~Sa~--~----~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 138 WGCPFMETSAK--S----KTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HTSCEEEECTT--C----HHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEecCC--C----CcCHHHHHHHHHHHHhh
Confidence 55555444443 3 37999999998887654
No 63
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=2.8e-18 Score=134.49 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+|+|.+|||||||+|+|++....... ..|....+..+. ..+..+.+|||||.. .+....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKIT-KGNVTIKLWDIGGQP-----------RFRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEE-eCCEEEEEEECCCCH-----------hHHHHH
Confidence 4689999999999999999999977642211 122223333333 567799999999953 222222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ- 174 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~- 174 (259)
...+..+|++|+|+|+++.-+... ...++...... ....|+++|+||+|+... ...+++.. ...
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~~~~ 151 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIE---------KMNL 151 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHH---------HTTG
T ss_pred HHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHH---------HhCh
Confidence 334467899999999985433222 22233332221 123599999999998754 22222111 110
Q ss_pred -Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 -LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 -~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+ ...+.+|..++..+ .++.+|++.|.+.+.
T Consensus 152 ~~~~~~~~~~~~~SA~~g----~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 152 SAIQDREICCYSISCKEK----DNIDITLQWLIQHSK 184 (188)
T ss_dssp GGCCSSCEEEEECCTTTC----TTHHHHHHHHHHTCC
T ss_pred hhhccCCeeEEEEECCCC----CCHHHHHHHHHHHHH
Confidence 01 12344566665544 789999999877553
No 64
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=136.86 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--KDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+|+|.+|||||||+|+|++....... .+ |....+..... .....+.+|||||......
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 87 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY---DP-TVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI---------- 87 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC---CC-CSEEEEEEEEC----CEEEEEEEECCCCTTCC----------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC---CC-ccceEEEEEEEECCEEEEEEEEECCCccchHH----------
Confidence 45789999999999999999999987753211 11 21111111111 2345789999999664322
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.....+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+.... .+ .......+.
T Consensus 88 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~ 156 (201)
T 3oes_A 88 -LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPER--EV-------QAVEGKKLA 156 (201)
T ss_dssp -CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGC--CS-------CHHHHHHHH
T ss_pred -HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcccc--cc-------CHHHHHHHH
Confidence 12345667899999999984432222 233333332211 1234999999999987431 11 112344555
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
...+.. +|..++..+ .++.++++.|.+.+.+..
T Consensus 157 ~~~~~~--~~~~Sa~~~----~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 157 ESWGAT--FMESSAREN----QLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHTCE--EEECCTTCH----HHHHHHHHHHHHHHHHC-
T ss_pred HHhCCe--EEEEeCCCC----CCHHHHHHHHHHHHHhhh
Confidence 555554 444444433 799999999988876643
No 65
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.79 E-value=1.8e-18 Score=136.12 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=101.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|++++....... . .|....+......++. .+.+|||||... +.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~---~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 85 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY---V-PTVFENFSHVMKYKNEEFILHLWDTAGQEE-----------YD 85 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC---C-CCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc---C-CeeeeeeEEEEEECCEEEEEEEEECCCcHH-----------HH
Confidence 34689999999999999999999987742211 1 1222222222223443 569999999532 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
......+..+|++++|+|++++.+..+ ..++..+..... ..|+++|+||+|+....... ........+
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~-------~~~~~~~~~ 155 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRKDGSDD-------VTKQEGDDL 155 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCCTTTTC-------CCHHHHHHH
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccCCCCc-------ccHHHHHHH
Confidence 333456778899999999985433333 344555554321 24999999999987531000 112244556
Q ss_pred HHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 173 LQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+..+.. ++..++ ..+ .++.++++.+.+.+.+.
T Consensus 156 ~~~~~~~~~~~~Sa--~~~----~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 156 CQKLGCVAYIEASS--VAK----IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHTCSCEEECBT--TTT----BSHHHHHHHHHHHHHCS
T ss_pred HHhcCCCEEEEeec--CCC----CCHHHHHHHHHHHHHhc
Confidence 6666654 443333 333 78999999998877654
No 66
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=2.3e-18 Score=131.60 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=94.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
+..+|+++|.+|||||||+|++++...... . .+++.......+. .++ ..+.+|||||.... ......
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~-------~~~~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y--EPTKADSYRKKVV-LDGEEVQIDILDTAGQEDY-------AAIRDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC-C--CTTCCEEEEEEEE-ETTEEEEEEEEECCC---C-------HHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC-C--CCCcceEEEEEEE-ECCEEEEEEEEECCCcchh-------HHHHHH
Confidence 468999999999999999999998764221 1 1222222112222 333 37899999995432 111112
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+....... ......+..
T Consensus 72 ----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~ 137 (168)
T 1u8z_A 72 ----YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAD 137 (168)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred ----HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccC---------HHHHHHHHH
Confidence 2334699999999984433222 334444444332 1235999999999986431111 123444555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+.. ++..++..+ .++.++++.+.+.+.
T Consensus 138 ~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 QWNVN--YVETSAKTR----ANVDKVFFDLMREIR 166 (168)
T ss_dssp HHTCE--EEECCTTTC----TTHHHHHHHHHHHHH
T ss_pred HcCCe--EEEeCCCCC----CCHHHHHHHHHHHHH
Confidence 55544 344444433 789999999877664
No 67
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.79 E-value=2.1e-18 Score=134.07 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=99.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..++|+++|.+|||||||+|++++..... .. .+++. ..+......++ ..+.+|||||......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~--~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD-SY--DPTIE-NTFTKLITVNGQEYHLQLVDTAGQDEYSI----------- 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-CC--CTTCC-EEEEEEEEETTEEEEEEEEECCCCCTTCC-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC-CC--CCCcc-ccEEEEEEECCEEEEEEEEeCCCchhhhH-----------
Confidence 46899999999999999999999666322 11 11221 11122222444 4678999999764321
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.....+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+....... ......+.+
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~ 139 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVIS---------YEEGKALAE 139 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSC---------HHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceec---------HHHHHHHHH
Confidence 12234567899999999984332222 233333433222 1234999999999986441111 123445566
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
..+.. ++..++..+ .++.++++.+.+.+....+
T Consensus 140 ~~~~~--~~~~Sa~~~----~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 140 SWNAA--FLESSAKEN----QTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HTTCE--EEECCTTSH----HHHHHHHHHHHHHHHTC--
T ss_pred HhCCc--EEEEecCCC----CCHHHHHHHHHHHHHHhcC
Confidence 66554 444444433 7999999999888766543
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.79 E-value=6.6e-18 Score=132.31 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|+|++...... ..+++.......+. .++ ..+.+|||||... +..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~ 84 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVV-IDGETCLLDILDTAGQEE-----------YSA 84 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEE-ETTEEEEEEEEECCC-----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccc---cCCccceEEEEEEE-ECCEEEEEEEEECCChHH-----------HHH
Confidence 458999999999999999999997764221 12222222222222 334 3589999999542 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
........+|++++|+|+++..+..+ ..++..+..... ....|+++|+||+|+.... .. ...++.+.+
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~ 153 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VD---------TKQAHELAK 153 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SC---------HHHHHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CC---------HHHHHHHHH
Confidence 23345667899999999985433222 334444444322 1235999999999987531 11 123445555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+..+ +..++..+ .++.++++.|.+.+.+.
T Consensus 154 ~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 154 SYGIPF--IETSAKTR----QGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HHTCCE--EECCTTTC----TTHHHHHHHHHHHHHHH
T ss_pred HcCCeE--EEEeCCCC----CCHHHHHHHHHHHHHHH
Confidence 555544 34444333 78999999988877654
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.4e-18 Score=133.45 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=94.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
+..+|+++|.+|||||||+|++++.........+.+.+.. ......+ ..+.+|||||..... . ....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~ 70 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR----QVISCDKSICTLQITDTTGSHQFP----A---MQRL 70 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE----EEEEETTEEEEEEEEECCSCSSCH----H---HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE----EEEEECCEEEEEEEEECCCchhhH----H---HHHH
Confidence 3579999999999999999999987642222222222211 1111222 378999999975421 1 1112
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
. ...+|++++|+|++++.+.. ...++..+.+..+.....|+++|+||+|+.... .+. ......+..
T Consensus 71 ~----~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~--~v~-------~~~~~~~~~ 137 (172)
T 2erx_A 71 S----ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EVQ-------SSEAEALAR 137 (172)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CSC-------HHHHHHHHH
T ss_pred h----cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc--ccC-------HHHHHHHHH
Confidence 2 22459999999998443222 234555555543322235999999999986431 111 112334444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+..+ |..++..+ .++.+|++.|.+.+.
T Consensus 138 ~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 TWKCAF--METSAKLN----HNVKELFQELLNLEK 166 (172)
T ss_dssp HHTCEE--EECBTTTT----BSHHHHHHHHHHTCC
T ss_pred HhCCeE--EEecCCCC----cCHHHHHHHHHHHHh
Confidence 445443 34443333 789999999877553
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=4e-19 Score=142.48 Aligned_cols=170 Identities=17% Similarity=0.198 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|+|++.........+.+.+..... .....+ ..+.+|||||........
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~-------- 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT--FLDDQGNVIKFNVWDTAGQEKKAVLK-------- 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE--EEBTTSCEEEEEEEEECSGGGTSCCC--------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE--EEeCCCcEEEEEEEecCCchhhchHH--------
Confidence 35689999999999999999999987643221222222222111 111222 479999999965432211
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
......+|++|+|+|++++.+..+ ..++..+....... .|+++|+||+|+.... .+ .......+.
T Consensus 79 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~--~~-------~~~~~~~~~ 144 (218)
T 4djt_A 79 ---DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQ--KI-------SKKLVMEVL 144 (218)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------C-------CHHHHHHHT
T ss_pred ---HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcccc--cc-------CHHHHHHHH
Confidence 112446799999999985544333 34555555544332 4999999999987541 11 011222333
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCC
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPY 216 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~ 216 (259)
...+..++..++. .+ .++.+++..|.+.+.+......
T Consensus 145 ~~~~~~~~~~Sa~--~g----~gv~~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 145 KGKNYEYFEISAK--TA----HNFGLPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp TTCCCEEEEEBTT--TT----BTTTHHHHHHHHHHHCCTTCCB
T ss_pred HHcCCcEEEEecC--CC----CCHHHHHHHHHHHHhccccccc
Confidence 3334344444443 33 7899999999998877654443
No 71
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.78 E-value=2.6e-18 Score=134.68 Aligned_cols=165 Identities=14% Similarity=0.080 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV- 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~- 94 (259)
..++|+++|.+|||||||+|+|++.........+.+. ......+. .++ ..+.+|||||.. .+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~~-----------~~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVD-IDGERIKIQLWDTAGQE-----------RFRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEE-ETTEEEEEEEEECCCSH-----------HHHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEE-ECCEEEEEEEEECCCch-----------hhhh
Confidence 4589999999999999999999977653222222222 22222222 333 479999999942 122
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.........+|++|+|+|+++..+... ..++..+..... ....|+++|+||+|+.... .+ .....+.+.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~ 154 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAI--QV-------PTDLAQKFA 154 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGC--CS-------CHHHHHHHH
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--ee-------CHHHHHHHH
Confidence 222334567899999999984433222 334555544331 2235999999999986431 11 112334455
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
...+..++..++... ....++.+++..|.+.+.
T Consensus 155 ~~~~~~~~~~Sa~~~---~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 155 DTHSMPLFETSAKNP---NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHTTCCEEECCSSSG---GGGSCHHHHHHHHC----
T ss_pred HHcCCEEEEEeCCcC---CcccCHHHHHHHHHHHHh
Confidence 555555444444322 112578999988876554
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.78 E-value=8.4e-19 Score=139.16 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=74.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC--CcccccCCCCCcce--eeEEEEEEeeC----CcEEEEEeCCCCCCCCCChHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR--RAFKSKAGSSGVTK--TCEMQRTMLKD----GQVVNVIDTPGLFDSSADSEF 88 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~--~~~~~~~~~~~~T~--~~~~~~~~~~~----~~~~~liDTPG~~~~~~~~~~ 88 (259)
....+|+++|.+|||||||+|+|++. ... .. ...|. +.....+. .+ ...+.+|||||..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~-------- 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL-KD---YAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGSD-------- 84 (208)
T ss_dssp EEEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTTH--------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCccc-CC---CCCccceEEEEEEEE-ECCcccEEEEEEEECCCcH--------
Confidence 34579999999999999999999987 321 11 11222 12222223 23 3479999999953
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCC-CCcccHHhhhCCCC
Q 024985 89 VSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELE-DNDETLEDYLGPEC 165 (259)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~-~~~~~~~~~~~~~~ 165 (259)
.+.......+..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+.. .. .+ .
T Consensus 85 ---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--~v-------~ 152 (208)
T 2yc2_C 85 ---LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH--QV-------R 152 (208)
T ss_dssp ---HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CC-------C
T ss_pred ---HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc--cC-------C
Confidence 344445566788999999999985443222 3445555443220 02349999999999875 31 11 1
Q ss_pred CchHHHHHHHcCCcEEEEeCCCcc-cccchhHHHHHHHHHHHHHH
Q 024985 166 PKPLKEILQLCENRRVLFDNKTKD-AATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~eLl~~i~~~~~ 209 (259)
......+....+.. ++..++.. + .++.++++.|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~--~~~~Sa~~~~----~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 153 LDMAQDWATTNTLD--FFDVSANPPG----KDADAPFLSIATTFY 191 (208)
T ss_dssp HHHHHHHHHHTTCE--EEECCC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCE--EEEeccCCCC----cCHHHHHHHHHHHHH
Confidence 12345556665543 44444433 3 789999998877664
No 73
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=2.3e-18 Score=133.96 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=95.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||+|++++...... ..+.+ .....+. .++..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~----~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG----FNVETLS-YKNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTT----CCEEEEE-ETTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCcc-CCcCc----cceEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence 4568999999999999999999997765221 11222 1222223 4578999999999754321 2
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+..+|++++|+|++++.+... ...++...... ....|+++|+||+|+... ...++. ...+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i---------~~~~~ 145 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEV---------SKELN 145 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHH---------HHHTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHH---------HHHhC
Confidence 2345678899999999985544332 23334433321 134599999999998754 222211 11111
Q ss_pred H--c-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 L--C-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~--~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
. . ...+.++..++..+ .++.++++.+.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 146 LVELKDRSWSIVASSAIKG----EGITEGLDWLIDVIKE 180 (183)
T ss_dssp TTTCCSSCEEEEEEBGGGT----BTHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEccCCCC----cCHHHHHHHHHHHHHh
Confidence 1 1 11233444444443 7999999999887754
No 74
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=9.5e-20 Score=155.58 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
..|+|+|.+|||||||+|+|++..... ...+.+|..+....+...++..+.+|||||+.+.......+...+.+.+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 368999999999999999999876422 223345555555544433347899999999753222122233444444433
Q ss_pred cCCCccEEEEEEeCCC---CCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 100 AKDGIHAVLLVFSVRN---RFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+|++|+|+|+++ +-+..+ ..++..+......-...|+++|+||+|+... . ..+..+.+.
T Consensus 237 ----~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~-----------e~~~~l~~~ 299 (342)
T 1lnz_A 237 ----TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A-----------ENLEAFKEK 299 (342)
T ss_dssp ----CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H-----------HHHHHHHHH
T ss_pred ----ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H-----------HHHHHHHHH
Confidence 499999999974 222222 3344455542111134699999999998743 1 123344455
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
+...+.+|..++... .++.+|+..|.+.+.+...
T Consensus 300 l~~~~~v~~iSA~tg----~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 300 LTDDYPVFPISAVTR----EGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCSCCCBCCCSSCCS----STTHHHHHHHHHHHTSCCC
T ss_pred hhcCCCEEEEECCCC----cCHHHHHHHHHHHHhhCcc
Confidence 443222344444333 7899999999998876544
No 75
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=3.3e-18 Score=130.66 Aligned_cols=158 Identities=9% Similarity=0.033 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
.+|+++|++|||||||+|++++..... . . .|.......+. ..+..+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~--~-~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--T--I-PTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--C--C-CCSSCCEEEEE-CSSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--c--c-CcCceeEEEEE-ECCEEEEEEEcCCChh-----------hHHHHHH
Confidence 479999999999999999998766421 1 1 12222222333 4667999999999642 2222333
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
.+..+|++++|+|++++-+... ...++...... ....|+++|+||+|+... ...+++... .. ...+.
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~------~~~~~ 132 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-LG------LHSLR 132 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT------GGGCS
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-hC------ccccc
Confidence 5678899999999985533222 22333332221 123599999999998754 222221110 00 01111
Q ss_pred -CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 178 -NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+.++..++..+ .++.++++.+.+.+.
T Consensus 133 ~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 133 HRNWYIQATCATSG----DGLYEGLDWLSNQLR 161 (164)
T ss_dssp SCCEEEEECBTTTT----BTHHHHHHHHHHHC-
T ss_pred CccEEEEEcccCCC----cCHHHHHHHHHHHHh
Confidence 1234555555444 789999999877654
No 76
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.78 E-value=6e-19 Score=136.51 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|||||||+|++++....... .+..+.......+. .++ ..+.+|||||..... .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~-----------~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFR-----------S 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHH-----------H
Confidence 3589999999999999999999976642221 22223233333333 334 379999999954321 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
........+|++++|+|++++.+.. ...++..+....+. ..|+++|+||+|+....... .........
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVS---------TEEGERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCC---------HHHHHHHHH
Confidence 1112234669999999998433222 23444444443322 34999999999986431111 112334445
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+..++..++.. + .++.++++.|.+.+.
T Consensus 148 ~~~~~~~~~Sa~~--~----~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 ELNVMFIETSAKA--G----YNVKQLFRRVAAALP 176 (179)
T ss_dssp HHTCEEEEEBTTT--T----BSHHHHHHHHHHTCC
T ss_pred HcCCeEEEEeCCC--C----CCHHHHHHHHHHHHh
Confidence 5555544444432 2 689999998876543
No 77
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=9.3e-19 Score=137.51 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=97.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...+|+++|.+|||||||+|+|++.........+.+.+.... .+.. .....+.||||||.......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK--TISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEE--EEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 458999999999999999999998764322222222222222 2221 12347999999996532221
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+.... .. ......+...
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~~ 149 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VD---------RNEGLKFARK 149 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SC---------HHHHHHHHHH
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cC---------HHHHHHHHHH
Confidence 1123456799999999984432222 233333333211 1235999999999985321 11 1123444555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+.. ++..++..+ .++.+|++.|.+.+.+.
T Consensus 150 ~~~~--~~~~Sa~~~----~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 150 HSML--FIEASAKTC----DGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TTCE--EEECCTTTC----TTHHHHHHHHHHHHHTS
T ss_pred cCCE--EEEecCCCC----CCHHHHHHHHHHHHHhh
Confidence 4543 444444443 78999999998887653
No 78
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.78 E-value=7.4e-19 Score=134.60 Aligned_cols=161 Identities=17% Similarity=0.066 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|++|||||||+|+|++........ +..+.......+. .++ ..+.+|||||.......
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~--------- 70 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQ-VNDEDVRLMLWDTAGQEEFDAI--------- 70 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEE-ETTEEEEEEEECCTTGGGTTCC---------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEE-ECCEEEEEEEEcCCCcHhHHHH---------
Confidence 346899999999999999999999876422211 1111222222222 233 47999999995432211
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.......+|++++|+|++++.+... ..++..+.... ...|+++|+||+|+.... .. .......+.
T Consensus 71 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~ 136 (168)
T 1z2a_A 71 --TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDS--CI-------KNEEAEGLA 136 (168)
T ss_dssp --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGC--SS-------CHHHHHHHH
T ss_pred --HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccc--cc-------CHHHHHHHH
Confidence 1223456799999999984432222 23444444433 234999999999987531 11 112344555
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
...+..++.. ++..+ .++.++++.|.+.+.
T Consensus 137 ~~~~~~~~~~--Sa~~~----~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 137 KRLKLRFYRT--SVKED----LNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHHTCEEEEC--BTTTT----BSSHHHHHHHHHHHH
T ss_pred HHcCCeEEEE--ecCCC----CCHHHHHHHHHHHHh
Confidence 5556544443 33333 689999998877653
No 79
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.78 E-value=4.8e-18 Score=136.03 Aligned_cols=170 Identities=18% Similarity=0.107 Sum_probs=91.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|+|++...... . .+++.......+. .++. .+.+|||||... +..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPES-Y--TPTVFERYMVNLQ-VKGKPVHLHIWDTAGQDD-----------YDR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCC-C--CCccceeEEEEEE-ECCEEEEEEEEECCCchh-----------hhH
Confidence 458999999999999999999998764221 1 1112111111222 3333 789999999542 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh-----CCCCCch
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL-----GPECPKP 168 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~-----~~~~~~~ 168 (259)
.....+..+|++|+|+|++++.+.... .++..+.... ...|+++|+||+|+... ....+.+ .......
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence 223346688999999999854333322 3455554432 13499999999998765 3222221 0011123
Q ss_pred HHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 169 LKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
...+....+.. .++..++..+ .++.+|++.|.+.+.+..
T Consensus 173 ~~~~~~~~~~~-~~~~~SA~~g----~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 173 GQEMARSVGAV-AYLECSARLH----DNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHTTCS-EEEECBTTTT----BSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCC-EEEEecCCCC----CCHHHHHHHHHHHHHHhh
Confidence 45555555541 2334444333 789999999888776543
No 80
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.78 E-value=2.1e-18 Score=143.00 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=101.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|.+|||||||+|+|+|...+.. ..+++|.......+. . +..+.+|||||.+....... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~--~~pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG--NWPGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC--SSSCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 47899999999999999999999864322 234566555444333 2 67899999999876532211 112222111
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
. ...+|++++|+|+++ . .....+...+.+ .+ .|+++|+||+|+.... ........+.+..+.
T Consensus 77 ~-~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~~----------~~~~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 L-SQRADSILNVVDATN-L-ERNLYLTTQLIE-TG----IPVTIALNMIDVLDGQ----------GKKINVDKLSYHLGV 138 (272)
T ss_dssp H-TTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-TC----SCEEEEEECHHHHHHT----------TCCCCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-h-HhHHHHHHHHHh-cC----CCEEEEEEChhhCCcC----------CcHHHHHHHHHHcCC
Confidence 1 146899999999983 2 112233333433 23 4999999999976321 111234555566565
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.++..++ ..+ .|+.+|++.|.+.+..
T Consensus 139 ~vi~~SA--~~g----~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 139 PVVATSA--LKQ----TGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CEEECBT--TTT----BSHHHHHHHHHHSCTT
T ss_pred CEEEEEc--cCC----CCHHHHHHHHHHHHhh
Confidence 5444443 332 7899999999886644
No 81
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.78 E-value=2.9e-18 Score=152.41 Aligned_cols=164 Identities=13% Similarity=0.168 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|++|||||||+|+|++....... ..+++|.+.....+. .++..+.+|||||+.++... +.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~-~~g~~l~liDT~G~~~~~~~---ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFI-HDKTMFRLTDTAGLREAGEE---IEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEE-ETTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEE-ECCeEEEEEECCCCCcchhH---HHHHHHHHHH
Confidence 468999999999999999999998642222 234556555544444 57889999999998653211 1111112234
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
..+..+|++|+|+|++++.+.... ....++... . ..|+++|+||+|+.... ... .+.+.+...
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~~--~~~----------~~~l~~~~~ 371 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAANA--DAL----------IRAIADGTG 371 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTTT--HHH----------HHHHHHHHT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCcc--chh----------HHHHHhcCC
Confidence 466789999999999977666321 222233332 2 24999999999987652 111 112222211
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.. ++..++..+ .|+.+|++.|.+.+.
T Consensus 372 ~~--~i~vSAktg----~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TE--VIGISALNG----DGIDTLKQHMGDLVK 397 (476)
T ss_dssp SC--EEECBTTTT----BSHHHHHHHHTHHHH
T ss_pred Cc--eEEEEECCC----CCHHHHHHHHHHHHh
Confidence 22 333343333 799999999999887
No 82
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.78 E-value=3.8e-18 Score=132.91 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=96.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|+|++...... ..+++.......+. .++ ..+.+|||||..... . ...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~----~---~~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYA----A---IRD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCTTCCEEEEEEEE-ETTEEEEEEEEECCCTTCCH----H---HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCc---CCCccceEEEEEEE-ECCEEEEEEEEECCCCcccH----H---HHH
Confidence 3568999999999999999999998764221 11222222222222 344 378999999965421 1 111
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.. +..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+....... ...++.+.
T Consensus 85 ~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~ 150 (187)
T 2a9k_A 85 NY----FRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRA 150 (187)
T ss_dssp HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred HH----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccC---------HHHHHHHH
Confidence 22 234599999999984432222 334444444332 1235999999999986431111 12344555
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+..+.. ++..++..+ .++.+|++.|.+.+.+
T Consensus 151 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 151 EQWNVN--YVETSAKTR----ANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHTTCE--EEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred HHcCCe--EEEeCCCCC----CCHHHHHHHHHHHHHH
Confidence 555544 344444333 7899999988776654
No 83
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=2e-18 Score=134.48 Aligned_cols=155 Identities=11% Similarity=0.079 Sum_probs=93.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|.+|||||||+|+|++...... ..+.+.+ ...+. .++..+.+|||||.... ....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~----~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN----VEEIV-INNTRFLMWDIGGQESL-----------RSSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSSSS----CEEEE-ETTEEEEEEEESSSGGG-----------TCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCcee----eEEEE-ECCEEEEEEECCCCHhH-----------HHHH
Confidence 468999999999999999999998875211 1122222 12222 46789999999997432 1222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ- 174 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~- 174 (259)
...+..+|++|+|+|++++.+... ...++...... ....|+++|+||+|+... ...+++ ...+.
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i---------~~~~~~ 149 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEI---------SQFLKL 149 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHH---------HHHTTG
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHH---------HHHhCc
Confidence 345678899999999985544332 22223332221 123599999999998754 222211 11111
Q ss_pred -Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 175 -LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 175 -~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
.. ...+.+|..++..+ .++.+|++.|.+
T Consensus 150 ~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~ 179 (181)
T 2h17_A 150 TSIKDHQWHIQACCALTG----EGLCQGLEWMMS 179 (181)
T ss_dssp GGCCSSCEEEEECBTTTT----BTHHHHHHHHHT
T ss_pred ccccCCceEEEEccCCCC----cCHHHHHHHHHh
Confidence 11 12334555555444 789999988754
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.6e-18 Score=136.62 Aligned_cols=165 Identities=17% Similarity=0.117 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|+|++.........+.+.+. ......++ ..+.+|||||..... . ...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY----RQVISCDKSVCTLQITDTTGSHQFP----A---MQR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE----EEEEEETTEEEEEEEEECCGGGSCH----H---HHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce----eEEEEECCEEEEEEEEeCCChHHhH----H---HHH
Confidence 4568999999999999999999998664222111111111 11111233 378999999965321 1 111
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
. .+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+.... .. ......+.
T Consensus 75 ~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~ 140 (199)
T 2gf0_A 75 L----SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VD---------TREAQAVA 140 (199)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SC---------HHHHHHHH
T ss_pred H----hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cC---------HHHHHHHH
Confidence 1 2234599999999984333222 33555555543322235999999999987531 11 11233444
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
...+..+ |..++..+ .++.+|++.|.+.+.+..
T Consensus 141 ~~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 141 QEWKCAF--METSAKMN----YNVKELFQELLTLETRRN 173 (199)
T ss_dssp HHHTCEE--EECBTTTT----BSHHHHHHHHHHHCSSSC
T ss_pred HHhCCeE--EEEecCCC----CCHHHHHHHHHHHHhhhh
Confidence 5555443 44443333 789999999988775543
No 85
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=3.1e-18 Score=131.47 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|++|||||||+|+|++...... ..++.|.......+. .++..+.+|||||......... .+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEE-ETTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEE-ECCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence 47899999999999999999998764222 123334333333333 4567899999999876432211 111211111
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
. ..++|++++|+|+++ . .....++..+.+ . ..|+++|+||+|+... .. .......+.+.++.
T Consensus 78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~-~----~~p~ilv~nK~Dl~~~--~~--------~~~~~~~~~~~~~~ 139 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLME-M----GANLLLALNKMDLAKS--LG--------IEIDVDKLEKILGV 139 (165)
T ss_dssp H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHH-T----TCCEEEEEECHHHHHH--TT--------CCCCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHh-c----CCCEEEEEEchHhccc--cC--------hhhHHHHHHHHhCC
Confidence 0 125799999999973 2 122234444433 1 2499999999997532 11 01124455555554
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+ +..++..+ .++.+|++.+.+.+
T Consensus 140 ~~--~~~SA~~~----~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KV--VPLSAAKK----MGIEELKKAISIAV 163 (165)
T ss_dssp CE--EECBGGGT----BSHHHHHHHHHHHT
T ss_pred CE--EEEEcCCC----CCHHHHHHHHHHHh
Confidence 44 34444333 78999999887654
No 86
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.78 E-value=1.1e-17 Score=132.61 Aligned_cols=164 Identities=16% Similarity=0.077 Sum_probs=97.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
....++|+|+|.+|||||||+|+|++...... ..+++.......+. .++ ..+.+|||||..... . ..
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~----~---~~ 79 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYA----A---IR 79 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCTTCCEEEEEEEE-ETTEEEEEEEEECCCTTCCH----H---HH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCccceEEEEEEE-ECCEEEEEEEEcCCChhhhH----H---HH
Confidence 34568999999999999999999997764221 12222222222222 344 378999999965421 1 11
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
.. .+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+....... ...+..+
T Consensus 80 ~~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~ 145 (206)
T 2bov_A 80 DN----YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNR 145 (206)
T ss_dssp HH----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSC---------HHHHHHH
T ss_pred HH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCcccccccc---------HHHHHHH
Confidence 11 2234599999999984432222 334444444321 1235999999999986531111 1234445
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
....+..++..++. .+ .|+.+|+..|.+.+.+
T Consensus 146 ~~~~~~~~~~~Sa~--~g----~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 146 AEQWNVNYVETSAK--TR----ANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHTCEEEEECTT--TC----TTHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEEeCC--CC----CCHHHHHHHHHHHHHH
Confidence 55555544444443 33 7899999998877654
No 87
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.77 E-value=3.7e-18 Score=134.16 Aligned_cols=167 Identities=8% Similarity=0.039 Sum_probs=98.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEE--ee--CCcEEEEEeCCCCCCCCCCh
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTM--LK--DGQVVNVIDTPGLFDSSADS 86 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~--~~--~~~~~~liDTPG~~~~~~~~ 86 (259)
....+|+++|.+|||||||+|.+.+......... ....|....+.... .. ....+.+|||||.....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 4568999999999999999999887653221110 01122222222111 11 22479999999965421
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHH----HHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985 87 EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL----ESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG 162 (259)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l----~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~ 162 (259)
......+..+|++|+|+|++.+....+...+..+ ..........|+++|+||+|+... ..
T Consensus 89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~------ 152 (198)
T 3t1o_A 89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LP------ 152 (198)
T ss_dssp --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CC------
T ss_pred --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cC------
Confidence 1122345678999999999854444444444433 332111134599999999998754 11
Q ss_pred CCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 163 PECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 163 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...++.+++..+. . ++..++..+ .++.++++.+.+.+.+.
T Consensus 153 ---~~~~~~~~~~~~~~~--~~~~Sa~~~----~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 153 ---VEMVRAVVDPEGKFP--VLEAVATEG----KGVFETLKEVSRLVLAR 193 (198)
T ss_dssp ---HHHHHHHHCTTCCSC--EEECBGGGT----BTHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCce--EEEEecCCC----cCHHHHHHHHHHHHHHH
Confidence 1233444444444 3 344444433 78999999988776543
No 88
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=135.17 Aligned_cols=173 Identities=15% Similarity=0.062 Sum_probs=97.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHH
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSK 91 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~ 91 (259)
.......+|+++|.+|||||||+|++++... ... ..+++.......+. .++. .+.+|||||......
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------- 83 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTE--YIPTAFDNFSAVVS-VDGRPVRLQLCDTAGQDEFDK------- 83 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEE-ETTEEEEEEEEECCCSTTCSS-------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCC--CCCcccceeEEEEE-ECCEEEEEEEEECCCCHHHHH-------
Confidence 3445678999999999999999999998773 222 12222222222222 4443 677999999764322
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCC
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PEC 165 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~ 165 (259)
.....+..+|++|+|+|++++.+..+. .++..+..... ..|+++|+||+|+.... .....+.. ...
T Consensus 84 ----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~ 155 (201)
T 2q3h_A 84 ----LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDV-KVLIELDKCKEKPVP 155 (201)
T ss_dssp ----SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCH-HHHHHHHTTTCCCCC
T ss_pred ----HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhch-hhhhhhcccccccCC
Confidence 123356678999999999854433332 35555554322 35999999999987531 11111110 001
Q ss_pred CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
......+....+.. .+|..++..+ .++.+|++.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~-~~~~~Sa~~g----~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 156 EEAAKLLAEEIKAA-SYIECSALTQ----KNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHHHHHHHTCS-EEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCc-EEEEEecCCC----CCHHHHHHHHHHHHhc
Confidence 12344455555541 2444454443 7899999988776654
No 89
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=2.7e-19 Score=158.21 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
++|+++|++|||||||+|+|++...... ...+++|.+....... ..+..+.+|||||+...... +...+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECT-TCSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEE-ECCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence 6899999999999999999998765322 2346677776666555 46778999999998633211 33345444455
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN- 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (259)
++..+|++|+|+|+..+++..+..+.+.+.. . ..|+++|+||+|+.... ....++ . ..+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-~----~~pvilv~NK~D~~~~~-~~~~~~------------~-~lg~~ 139 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-T----KKPVVLAVNKLDNTEMR-ANIYDF------------Y-SLGFG 139 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-C----CSCEEEEEECCCC------CCCSS------------G-GGSSC
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECccCccch-hhHHHH------------H-HcCCC
Confidence 5667799999999998888888776666643 2 34999999999987431 111111 1 1222
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.++..++. .+ .|+.+|++.+.+.+++
T Consensus 140 ~~~~iSA~--~g----~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 EPYPISGT--HG----LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CCEECBTT--TT----BTHHHHHHHHHHTGGG
T ss_pred CeEEEeCc--CC----CChHHHHHHHHHhcCc
Confidence 33333333 22 7899999998887764
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.77 E-value=3.9e-18 Score=134.06 Aligned_cols=166 Identities=8% Similarity=0.010 Sum_probs=94.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||+|++++..... . ..|.......+. .++..+.+|||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~--~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT--L---QPTWHPTSEELA-IGNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC--C---CCCCSCEEEEEE-ETTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc--c---ccCCCCCeEEEE-ECCEEEEEEECCCCHHHH-----------HH
Confidence 456799999999999999999999876421 1 122222233333 567899999999975321 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+.... .+.+.+++.... ..-+..+
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~- 160 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI- 160 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---C-
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-ccccccc-
Confidence 2345678899999999985543332 22333332211 11235999999999987531 012222221100 0000000
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
.-.....++..++..+ .|+.++++.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~ 188 (190)
T 1m2o_B 161 EGQRPVEVFMCSVVMR----NGYLEAFQWLSQ 188 (190)
T ss_dssp CSSCCEEEEECBTTTT----BSHHHHHHHHHT
T ss_pred cccceEEEEEeECCcC----CCHHHHHHHHHh
Confidence 0012344566665544 799999988754
No 91
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=3e-18 Score=151.62 Aligned_cols=193 Identities=17% Similarity=0.191 Sum_probs=112.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-HH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV-KC 96 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~-~~ 96 (259)
..++|+++|++|||||||+|+|+|....... ..+++|.+.....+. .++..+.+|||||+........+....+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~-~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVF-IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEE-ETTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEE-ECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999998753222 234555554444444 57789999999997532111000000000 00
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
.......+|++++|+|++.+.+..+..+...+.. .+ .|+++|+||+|+........+++.. .+...+..+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTK-----LFREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHH-----HHHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHH-----HHHHHhccC
Confidence 0112234599999999987788777666665554 34 3999999999988652112222211 111222222
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG 227 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (259)
....+ +..++..+ .++.+|++.+.+.+.....+.-+..+...++++
T Consensus 327 ~~~~~-~~~SA~~g----~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~ 372 (439)
T 1mky_A 327 DYSPL-IFTSADKG----WNIDRMIDAMNLAYASYTTKVPSSAINSALQKV 372 (439)
T ss_dssp TTSCE-EECBTTTT----BSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCcE-EEEECCCC----CCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 33222 23333333 799999999999988877665556565555544
No 92
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.77 E-value=3.4e-17 Score=126.82 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=97.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
+....++|+++|.+|||||||+|+|++...... ..+++. ..+......++ ..+.+|||||........
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD---YDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS---CCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc---cCCCcC-ceEEEEEEECCEEEEEEEEECCCchhhHHHH------
Confidence 345678999999999999999999998754221 122222 22222222344 378899999976543211
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
... +..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+.... .+ .......
T Consensus 75 -~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~ 139 (181)
T 2fn4_A 75 -EQY----MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQR--QV-------PRSEASA 139 (181)
T ss_dssp -HHH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGC--CS-------CHHHHHH
T ss_pred -HHH----HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--cc-------CHHHHHH
Confidence 111 223599999999984322222 233333322221 1234999999999987531 11 0112334
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+....+..+ |..++..+ .++.++++.|.+.+.+.
T Consensus 140 ~~~~~~~~~--~~~Sa~~~----~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 140 FGASHHVAY--FEASAKLR----LNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHTTCEE--EECBTTTT----BSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeE--EEecCCCC----CCHHHHHHHHHHHHHHh
Confidence 444444443 34443333 78999999998877654
No 93
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=1.1e-18 Score=147.01 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=107.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC-CCCCChHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFVSKEIVKC 96 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~-~~~~~~~~~~~~~~~~ 96 (259)
...+|+++|++|||||||+|+|+|....... ..+++|...... +...++..+.++||||+. .. ...+...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~g-i~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVG-IHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEE-EEEETTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEE-EEEECCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence 3468999999999999999999998753322 223344433332 233567789999999975 21 11222233333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+...+|++++|+|++. ++..+..+++.+.. ...|+++|+||+|..... ..+.+ .+..+.+..
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~--------~l~~l~~~~ 146 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLP--------HLQFLASQM 146 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHH--------HHHHHHTTS
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHH--------HHHHHHHhc
Confidence 4556788999999999986 88888766666542 124999999999987521 22211 223333333
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+.. .++..++..+ .++.+|++.|...+++
T Consensus 147 ~~~-~~i~iSA~~g----~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 147 NFL-DIVPISAETG----LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CCS-EEEECCTTTT----TTHHHHHHHHHTTCCB
T ss_pred CcC-ceEEEECCCC----CCHHHHHHHHHHhCCc
Confidence 332 2344444333 7899999999887764
No 94
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.77 E-value=2.3e-18 Score=138.13 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
..++|+|+|.+|||||||+++++.......-..+.+... ...... .++ ..+.||||+|..... .
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~--~~k~~~-~~~~~v~l~iwDtaGqe~~~-----------~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF--LSKTMY-LEDRTIRLQLWDTAGLERFR-----------S 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------C--EEEEEE-CSSCEEEEEEECCSCTTTCG-----------G
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEE--EEEEEE-ecceEEEEEEEECCCchhhh-----------h
Confidence 357999999999999999999987654221111111111 111112 233 378899999965321 2
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....++.+++++++|+|++++-+... ..++..+....+.+. |++||.||+|+.... .+ .......+.+
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r--~V-------~~~e~~~~a~ 146 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKR--QV-------SIEEGERKAK 146 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGC--CS-------CHHHHHHHHH
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcC--cc-------cHHHHhhHHH
Confidence 22335678899999999985544332 456666666555443 999999999976431 11 1223445666
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.. +|..++..+ .+|.++++.|.+.+..
T Consensus 147 ~~~~~--~~e~SAktg----~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 147 ELNVM--FIETSAKAG----YNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHTCE--EEEEBTTTT----BSHHHHHHHHHHHC--
T ss_pred HhCCe--eEEEeCCCC----cCHHHHHHHHHHHHHh
Confidence 66654 444444443 7899999988776643
No 95
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=1.4e-18 Score=134.58 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC---cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
....+|+++|.+|||||||+|++++.........+.+ .......+. .++ ..+.+|||||....... .
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~-------~ 73 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRIT-LPGNLNVTLQIWDIGGQTIGGKM-------L 73 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEE-ETTTEEEEEEEEECTTCCTTCTT-------H
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEE-eCCCCEEEEEEEECCCCccccch-------h
Confidence 4568999999999999999999998764221111111 122222223 233 58999999997643221 1
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
...+..+|++++|+|++++.+... ..++..+..........| +++|+||+|+.... .+ .......
T Consensus 74 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~--~~-------~~~~~~~ 140 (178)
T 2hxs_A 74 ----DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR--TI-------KPEKHLR 140 (178)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC--SS-------CHHHHHH
T ss_pred ----hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc--cc-------CHHHHHH
Confidence 122456799999999985433222 244455544322111225 89999999986431 11 0123344
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+....+..++..++ ..+ .++.++++.|.+.+.+
T Consensus 141 ~~~~~~~~~~~~Sa--~~~----~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 141 FCQENGFSSHFVSA--KTG----DSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHTCEEEEECT--TTC----TTHHHHHHHHHHHHTT
T ss_pred HHHHcCCcEEEEeC--CCC----CCHHHHHHHHHHHHHh
Confidence 55555554444443 333 7899999998877654
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.77 E-value=2.9e-17 Score=125.06 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|.+|||||||+|++++....... .+++.......+. .++ ..+.+|||||...... . ....
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~~----~---~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC---DPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSA----M---RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEE-ETTEEEEEEEEECCCCSSCCH----H---HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcccc---CCccceEEEEEEE-ECCEEEEEEEEECCCchhhhH----H---HHHh
Confidence 468999999999999999999977642211 1122211112222 333 3688999999654321 1 1112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+ ..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+... .. .......+.+.
T Consensus 72 ~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~--~~--------~~~~~~~~~~~ 136 (166)
T 2ce2_X 72 M----RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAAR--TV--------ESRQAQDLARS 136 (166)
T ss_dssp H----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CS--------CHHHHHHHHHH
T ss_pred h----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhc--cc--------CHHHHHHHHHH
Confidence 2 24599999999984432222 344444444322 123599999999998753 11 12234455555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+..++..+... + .++.++++.|.+.+.
T Consensus 137 ~~~~~~~~Sa~~--~----~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 137 YGIPYIETSAKT--R----QGVEDAFYTLVREIR 164 (166)
T ss_dssp HTCCEEEECTTT--C----TTHHHHHHHHHHHHH
T ss_pred cCCeEEEecCCC--C----CCHHHHHHHHHHHHH
Confidence 565554444432 2 689999999887764
No 97
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.77 E-value=6.6e-18 Score=135.25 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeE--EEEEEeeC-----------CcEEEEEeCCCCCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCE--MQRTMLKD-----------GQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~--~~~~~~~~-----------~~~~~liDTPG~~~~~~ 84 (259)
...+|+|+|.+|||||||+|+|++...... ...|.... ...+.... ...+.||||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----- 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ----- 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-----
Confidence 358999999999999999999998764211 11122211 11122111 357999999993
Q ss_pred ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985 85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLG 162 (259)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~ 162 (259)
..+.......+..+|++|+|+|+++..+... +..++..+.... ...|+++|+||+|+.... .+
T Consensus 95 ------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~v----- 159 (217)
T 2f7s_A 95 ------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQR--EV----- 159 (217)
T ss_dssp ------HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC--CS-----
T ss_pred ------HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCcccccc--cc-----
Confidence 1233334445667899999999984332222 223343322211 235999999999986431 11
Q ss_pred CCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 163 PECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.......+....+..++..++.. + .++.+|++.|.+.+.+
T Consensus 160 --~~~~~~~~~~~~~~~~~~~Sa~~--g----~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 160 --NERQARELADKYGIPYFETSAAT--G----QNVEKAVETLLDLIMK 199 (217)
T ss_dssp --CHHHHHHHHHHTTCCEEEEBTTT--T----BTHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHCCCcEEEEECCC--C----CCHHHHHHHHHHHHHH
Confidence 11234455566665555555443 2 6899999988776543
No 98
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=4.4e-17 Score=126.71 Aligned_cols=167 Identities=20% Similarity=0.121 Sum_probs=98.9
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHH
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSK 91 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~ 91 (259)
+......+|+++|.+|||||||+|++++....... .+++.. ........++. .+.+|||||........
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----- 83 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY---DPTIED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMR----- 83 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC---CTTCCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSH-----
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCccc-eeEEEEEeCCcEEEEEEEECCCchhhHHHH-----
Confidence 34456789999999999999999999976542211 112221 21222224444 46679999965432211
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (259)
.. .+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+...... ......
T Consensus 84 --~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v---------~~~~~~ 147 (183)
T 3kkq_A 84 --EQ----YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKV---------TRDQGK 147 (183)
T ss_dssp --HH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCS---------CHHHHH
T ss_pred --HH----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCc---------CHHHHH
Confidence 11 1224599999999985432221 334444443222 223599999999998753111 122345
Q ss_pred HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+....+..++..++.. . ..++.+++..|.+.+.+
T Consensus 148 ~~~~~~~~~~~~~Sa~~-~----~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 148 EMATKYNIPYIETSAKD-P----PLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHTCCEEEEBCSS-S----CBSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEeccCC-C----CCCHHHHHHHHHHHHhh
Confidence 56666665555555441 2 26899999998887654
No 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.77 E-value=1.8e-17 Score=129.12 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||+|++++....... .|.......+. .++..+.+|||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~-~~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQ-SQGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence 45689999999999999999999987542111 11112222233 4578999999999642 1122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+..+|++++|+|++++-+... ...++...+.. ....|+++|+||+|+... ...++.. ..+.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~---------~~~~ 143 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIA---------EGLN 143 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHH---------HHhC
Confidence 2334567899999999985433322 12233332221 123599999999998754 2222111 1111
Q ss_pred --Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 --LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 --~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.. ...+.++..++..+ .|+.++++.+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 144 LHTIRDRVWQIQSCSALTG----EGVQDGMNWVCKNVN 177 (181)
T ss_dssp GGGCCSSCEEEEECCTTTC----TTHHHHHHHHHHTC-
T ss_pred chhccCCceEEEEccCCCC----CCHHHHHHHHHHHHH
Confidence 11 12344566666554 799999999877554
No 100
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=1.3e-18 Score=146.17 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC---CCC-----------------------ccee-------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG---SSG-----------------------VTKT------------- 57 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~---~~~-----------------------~T~~------------- 57 (259)
...++|+++|.+|||||||+|+|+|....+.... ..+ +|..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999876422111 111 1110
Q ss_pred ----------eEEEEEEeeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHhhcCCCccEE-EEEEeCCCCCCHhHH-H
Q 024985 58 ----------CEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMAKDGIHAV-LLVFSVRNRFSEEGG-A 123 (259)
Q Consensus 58 ----------~~~~~~~~~~~~~~~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i-l~v~d~~~~~~~~~~-~ 123 (259)
.....+.......+.||||||+..... ..+.....+......+...++.+ ++|+|++.+++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000011111236899999999875321 01111122233333333455655 479999866666653 3
Q ss_pred HHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc-EEEEeCCCcccccchhHHHHHHH
Q 024985 124 AIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR-RVLFDNKTKDAATRTEQVGKLIS 202 (259)
Q Consensus 124 ~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~ 202 (259)
+++.+.. ...|+++|+||+|+.... ....+.+... ...+... ..++..++..+ .++.+|++
T Consensus 184 ~~~~~~~-----~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~--------~~~~~~~~~~v~~~SA~~~----~gi~~l~~ 245 (299)
T 2aka_B 184 IAKEVDP-----QGQRTIGVITKLDLMDEG-TDARDVLENK--------LLPLRRGYIGVVNRSQKDI----DGKKDITA 245 (299)
T ss_dssp HHHHHCT-----TCSSEEEEEECGGGSCTT-CCCHHHHTTC--------SSCCTTCEEECCCCCCBCT----TSCBCHHH
T ss_pred HHHHhCC-----CCCeEEEEEEccccCCCC-chHHHHHhCC--------cCcCCCCcEEEECCChhhc----cccccHHH
Confidence 4444422 234999999999998652 1122222210 0011112 23455555444 67888888
Q ss_pred HHHH
Q 024985 203 LVNS 206 (259)
Q Consensus 203 ~i~~ 206 (259)
.+.+
T Consensus 246 ~l~~ 249 (299)
T 2aka_B 246 ALAA 249 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 101
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=2.4e-19 Score=159.35 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+|+|++|||||||+|+|++...... ...+++|.+....... ..+..+.+|||||+..... .+...+....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~-~~~~~~~liDT~G~~~~~~---~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDE---PFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECT-TCSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEE-ECCceEEEEECCCCCCcch---HHHHHHHHHH
Confidence 357999999999999999999999775322 2346777777666555 4567999999999874221 1233444445
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
..++..+|++|||+|+..+++..+..+++.+.+ . ..|+++|+||+|+.... ....++. ..+
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-~----~~pvilV~NK~D~~~~~-~~~~e~~-------------~lg 157 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-T----KKPVVLAVNKLDNTEMR-ANIYDFY-------------SLG 157 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-C----CSCEEEEEECC----------CCSG-------------GGS
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-c----CCCEEEEEECccchhhh-hhHHHHH-------------HcC
Confidence 555567799999999988899998888887765 2 34999999999987431 1111111 112
Q ss_pred C-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 178 N-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
. .++ ..++..+ .++.+|++.+.+.+..
T Consensus 158 ~~~~~--~iSA~~g----~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 158 FGEPY--PISGTHG----LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp SSSEE--ECCTTTC----TTHHHHHHHHHTTGGG
T ss_pred CCceE--Eeecccc----cchHHHHHHHHhhccc
Confidence 1 223 3333332 7899999988776653
No 102
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.77 E-value=4.8e-18 Score=134.45 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||+|++++...... ..+.+.+ ...+. .++..+.+|||||..... ..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~~t~~~~----~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT----SEELT-IAGMTFTTFDLGGHIQAR-----------RV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEEEE-ETTEEEEEEEECC----C-----------CG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-CCCCCce----eEEEE-ECCEEEEEEECCCcHhhH-----------HH
Confidence 4568999999999999999999998764211 1112222 22233 466899999999965322 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC-cccHHhhhCCCC---CchHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDN-DETLEDYLGPEC---PKPLKE 171 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~---~~~l~~ 171 (259)
....+..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+.... .+.+.+++.... ......
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence 2334567899999999985433322 22333232211 11235999999999987531 012222221100 000000
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+.........++..++..+ .|+.++++.+.+
T Consensus 165 ~~~~~~~~~~~~~~SA~~g----~gv~~l~~~l~~ 195 (198)
T 1f6b_A 165 LKELNARPLEVFMCSVLKR----QGYGEGFRWMAQ 195 (198)
T ss_dssp TTTCCSCCEEEEECBTTTT----BSHHHHHHHHHT
T ss_pred cccccCceEEEEEEECCCC----CCHHHHHHHHHH
Confidence 0000012344566665544 799999998764
No 103
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.77 E-value=9.2e-18 Score=132.51 Aligned_cols=170 Identities=16% Similarity=0.096 Sum_probs=95.4
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHH
Q 024985 13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVS 90 (259)
Q Consensus 13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~ 90 (259)
+.......+|+++|.+|||||||+|++++.........+ .+.......+. .++. .+.+|||||.... ...
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~---~~~-- 88 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERRIM-VDKEEVTLVVYDIWEQGDA---GGW-- 88 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEEEE-ETTEEEEEEEECCCCCSGG---GHH--
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEEEE-ECCEEEEEEEEecCCCccc---hhh--
Confidence 344456789999999999999999999865432121111 12122222222 3443 6788999996531 111
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985 91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL 169 (259)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l 169 (259)
+.. ..+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+.....-.. ...
T Consensus 89 --~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~---------~~~ 153 (195)
T 3cbq_A 89 --LRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSL---------EEG 153 (195)
T ss_dssp --HHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCH---------HHH
T ss_pred --hHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCH---------HHH
Confidence 111 12235699999999985433221 234444443221 12359999999999875411111 123
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+....+..++..++ ..+ .++.++++.+...+.+.
T Consensus 154 ~~~a~~~~~~~~e~Sa--~~~----~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 154 RHLAGTLSCKHIETSA--ALH----HNTRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHTTCEEEEEBT--TTT----BSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCEEEEEcC--CCC----CCHHHHHHHHHHHHHHh
Confidence 3445555544443433 333 68999999988877653
No 104
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.77 E-value=6.3e-18 Score=133.94 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=100.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHH
Q 024985 13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVS 90 (259)
Q Consensus 13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~ 90 (259)
.+......+|+++|.+|||||||+|++++....... .+..+.... ..+. .++ ..+.+|||||....
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~-~~~~~~~l~i~Dt~G~~~~-------- 86 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYI-ADIE-VDGKQVELALWDTAGQEDY-------- 86 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CCSSCCCCE-EEEE-ETTEEEEEEEECCCCSGGG--------
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCccc--CCcccceEE-EEEE-ECCEEEEEEEEECCCchhH--------
Confidence 344455789999999999999999999987652221 111111111 1122 334 37899999995421
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----C-
Q 024985 91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----P- 163 (259)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~- 163 (259)
.......+..+|++|+|+|+++..+... ..++..+..... ..|+++|+||+|+... ....+.+. .
T Consensus 87 ---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~ 158 (201)
T 2gco_A 87 ---DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD--EHTRRELAKMKQEP 158 (201)
T ss_dssp ---TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC--HHHHHHHHTTTCCC
T ss_pred ---HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC--ccchhhhcccccCc
Confidence 1222345678899999999984433222 345555554321 3499999999998865 22222111 0
Q ss_pred CCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 164 ECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
-.......+....+.. .+|..++..+ .++.+|++.|.+.+
T Consensus 159 v~~~~~~~~~~~~~~~-~~~~~SA~~g----~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 159 VRSEEGRDMANRISAF-GYLECSAKTK----EGVREVFEMATRAG 198 (201)
T ss_dssp CCHHHHHHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCc-EEEEeeCCCC----CCHHHHHHHHHHHH
Confidence 0112334455555541 2444454443 78999999887754
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.76 E-value=1.2e-17 Score=133.46 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=73.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+++|.+|||||||+|++++..... .. .+++ .....+.... +..+.+|||||.. .+.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQ--TSIT--DSSAIYKVNNNRGNSLTLIDLPGHE-----------SLR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCC-BC--CCCS--CEEEEEECSSTTCCEEEEEECCCCH-----------HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc-cc--CCcc--eeeEEEEecCCCccEEEEEECCCCh-----------hHH
Confidence 456899999999999999999999776422 11 1222 2222233221 5689999999953 122
Q ss_pred H-HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCCC
Q 024985 95 K-CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK----KVFDYMIVVFTGGNELED 152 (259)
Q Consensus 95 ~-~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ivV~nk~D~~~~ 152 (259)
. .....+..+|++|+|+|+++ +........+++...+.. ....|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2 22334667899999999983 322233344444433211 223599999999998865
No 106
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=9.8e-18 Score=131.02 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=102.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~~~~~~~ 95 (259)
..++|+++|++|||||||+|+|++...+... .++.|.......+. .++..+.+|||||........ +.+...+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-- 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSIDEIIARDY-- 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEE-ETTEEEEEEECCCCSCCSSSSHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEE-eCCcEEEEEECCCcCccccccHHHHHHHHH--
Confidence 5689999999999999999999987643332 23445444444444 567899999999987653221 1111111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+.. ..+|++++|+|.+ .+ .....++..+.. ...|+++|+||+|+... .. .......+.+.
T Consensus 81 -~~~--~~~~~~i~v~d~~-~~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~~--------~~~~~~~~~~~ 140 (188)
T 2wjg_A 81 -IIN--EKPDLVVNIVDAT-AL-ERNLYLTLQLME-----MGANLLLALNKMDLAKS--LG--------IEIDVDKLEKI 140 (188)
T ss_dssp -HHH--HCCSEEEEEEEGG-GH-HHHHHHHHHHHT-----TTCCEEEEEECHHHHHH--TT--------CCCCHHHHHHH
T ss_pred -Hhc--cCCCEEEEEecch-hH-HHHHHHHHHHHh-----cCCCEEEEEEhhhcccc--cc--------chHHHHHHHHH
Confidence 111 2469999999987 32 122233333332 12499999999997532 11 11245566666
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
++..++..++ .. ..++.+|++.+...+.+..
T Consensus 141 ~~~~~~~~Sa--~~----~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 141 LGVKVVPLSA--AK----KMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp HTSCEEECBG--GG----TBSHHHHHHHHHHHHTTC-
T ss_pred hCCCeEEEEe--cC----CCCHHHHHHHHHHHHHhcc
Confidence 6655444443 32 2689999999988887654
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.76 E-value=1.9e-18 Score=136.41 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=95.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
.......+|+++|.+|||||||+|.+++......... ...+.......+.......+.+|||||........ + ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---~-~~ 89 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT---F-DY 89 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGG-CCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT---C-CH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceee-eccccceeeeeccCCCeeEEEEEECCCCHHHHhhh---h-hc
Confidence 3445678999999999999999999998643221111 11122222111111234589999999976432211 0 00
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
. ..+.++|++|+|+|+++++......+..++..........|+++|+||+|+..+ ....+....-.......+.
T Consensus 90 ~----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~~~~ 163 (196)
T 3llu_A 90 E----MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRANDDLA 163 (196)
T ss_dssp H----HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHHHHH
T ss_pred c----cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHHHHH
Confidence 1 123356999999999866434445555666654322234599999999998754 1111000000011122333
Q ss_pred HHc--CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 174 QLC--ENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 174 ~~~--~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
... .....++..++. . .++.+++..+.+.
T Consensus 164 ~~~~~~~~~~~~e~Sa~----~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 164 DAGLEKLHLSFYLTSIY----D-HSIFEAFSKVVQK 194 (196)
T ss_dssp HTTCTTSCEEEEEECTT----S-THHHHHHHHHHHH
T ss_pred HhhhhcCCcceEEEEec----h-hhHHHHHHHHHHH
Confidence 311 223344444432 3 6899999887654
No 108
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.76 E-value=1.4e-18 Score=153.91 Aligned_cols=162 Identities=18% Similarity=0.176 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
..+|+++|++|||||||+|+|++....... ..+++|.+.....+. .++.++.+|||||+.++... +...-.....
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~-~~g~~v~liDT~G~~~~~~~---ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLV-VGGIPVQVLDTAGIRETSDQ---VEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEE-ETTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEE-ECCEEEEEEECCccccchhH---HHHHHHHHHh
Confidence 468999999999999999999987642222 234555554433333 57889999999998653211 1111112233
Q ss_pred hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
.....+|++|+|+|++++.+..+..+++.+.. .|+++|+||+|+... .... .+.. + . ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~---~--~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----P---E--NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----C---T--TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----h---c--cCC
Confidence 45678999999999998888877666665532 399999999998754 2211 1110 0 0 122
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.++..+.. .+ .|+.+|++.|.+.+...
T Consensus 359 ~~i~iSAk--tg----~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 359 QIVHTAAA--QK----QGIDSLETAILEIVQTG 385 (462)
T ss_dssp CEEEEBTT--TT----BSHHHHHHHHHHHHTTS
T ss_pred cEEEEECC--CC----CCHHHHHHHHHHHHhcc
Confidence 33334433 22 78999999999988654
No 109
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.76 E-value=8.6e-18 Score=128.94 Aligned_cols=163 Identities=17% Similarity=0.074 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|++|||||||+|++++........ .+.+.......+. .++ ..+.+|||||...... .+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~~~- 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WLQD- 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC---------------C-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hhhh-
Confidence 4689999999999999999998766422221 2222222222222 333 4788999999754211 0111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
..+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.+.... .......+...
T Consensus 71 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~---------~~~~~~~~~~~ 138 (169)
T 3q85_A 71 --HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREV---------SLEEGRHLAGT 138 (169)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCS---------CHHHHHHHHHH
T ss_pred --hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccC---------CHHHHHHHHHH
Confidence 11224699999999985322221 233443433221 113599999999998643111 11234455556
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+..+ +..++..+ .++.++++.+.+.+..
T Consensus 139 ~~~~~--~~~Sa~~~----~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 139 LSCKH--IETSAALH----HNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTCEE--EECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred cCCcE--EEecCccC----CCHHHHHHHHHHHHHh
Confidence 55544 44443333 7899999998877654
No 110
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=3.8e-17 Score=124.89 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=93.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
..+|+++|.+|||||||+|++++....... .+++.......+. .+ ...+.+|||||...... .. ...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~----~~---~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVE-VDCQQCMLEILDTAGTEQFTA----MR---DLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC---CCCSEEEEEEEEE-SSSCEEEEEEEEECSSCSSTT----HH---HHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCCccceEEEEEE-ECCEEEEEEEEECCChHHHHH----HH---HHH
Confidence 479999999999999999999986542211 1112111111122 22 34789999999764322 11 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.... .. .......+.+.
T Consensus 72 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~ 137 (167)
T 1c1y_A 72 ----MKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER--VV-------GKEQGQNLARQ 137 (167)
T ss_dssp ----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGC--CS-------CHHHHHHHHHH
T ss_pred ----hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccc--cC-------CHHHHHHHHHH
Confidence 223599999999984432222 334444544322 1235999999999986431 11 01233444555
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+. ..++..++..+ .++.+|++.|.+.+
T Consensus 138 ~~~-~~~~~~Sa~~~----~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCN-CAFLESSAKSK----INVNEIFYDLVRQI 165 (167)
T ss_dssp TTS-CEEEECBTTTT----BSHHHHHHHHHHHH
T ss_pred ccC-CcEEEecCCCC----CCHHHHHHHHHHHH
Confidence 422 22444444333 78999999887655
No 111
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.3e-17 Score=131.14 Aligned_cols=168 Identities=14% Similarity=0.049 Sum_probs=100.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|++++..... . ..+++.......+. .++ ..+.+|||||.....
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~----------- 80 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE-E--YVPTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDYD----------- 80 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCC-S--CCCSSCCCEEEEEE-SSSCEEEEEEECCCCSSSST-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC-C--CCCcccceeEEEEE-ECCEEEEEEEEECCCCcchh-----------
Confidence 345899999999999999999999775421 1 11222111111222 333 478999999976432
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC-----CCCc
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP-----ECPK 167 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~-----~~~~ 167 (259)
......+..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+... ....+.+.. ....
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE 155 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence 122345678899999999985433322 245555555322 3499999999998764 222111110 0112
Q ss_pred hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
....+....+.. .+|..++..+ .++.++++.|.+.+.
T Consensus 156 ~~~~~~~~~~~~-~~~~~Sa~~g----~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 156 QGQKLAKEIGAC-CYVECSALTQ----KGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHHHTCS-CEEECCTTTC----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-EEEEeeCCCC----CCHHHHHHHHHHHHh
Confidence 334445555441 2344444443 789999998876553
No 112
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.76 E-value=4.4e-18 Score=133.28 Aligned_cols=161 Identities=11% Similarity=0.085 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|.+|||||||+|++++...... .. |.......+. .++..+.+|||||...... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~-----------~ 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VP----TVGVNLETLQ-YKNISFEVWDLGGQTGVRP-----------Y 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-CS----STTCCEEEEE-ETTEEEEEEEECCSSSSCC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCc-CC----CCceEEEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence 3568999999999999999999987765321 11 2112222233 4578999999999764322 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL- 173 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~- 173 (259)
....+..+|++|+|+|++++-+... ...++...... ....|+++|+||+|+... ...+++.. ..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~---------~~~ 149 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAE---------QLG 149 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHH---------HTT
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHH---------HhC
Confidence 2335668899999999985543332 22333332221 123599999999998754 22222111 11
Q ss_pred -HHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 174 -QLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 174 -~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
..+ ...+.++..++..+ .++.++++.+.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 150 VSSIMNRTWTIVKSSSKTG----DGLVEGMDWLVERLREQ 185 (189)
T ss_dssp GGGCCSSCEEEEECCTTTC----TTHHHHHHHHHHHHHHT
T ss_pred hhhccCCceEEEEccCCCc----cCHHHHHHHHHHHHHhc
Confidence 111 12234555665544 79999999998887654
No 113
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.76 E-value=6.9e-18 Score=131.39 Aligned_cols=168 Identities=15% Similarity=0.017 Sum_probs=100.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|++++....... .+++......... .++. .+.+|||||.... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY-----------DR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSC---CCCSCCEEEEEEE-ETTEEEEEEEECCCCSGGG-----------TT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCc---CCcccceeEEEEE-ECCEEEEEEEEECCCCHhH-----------HH
Confidence 4589999999999999999999976542211 1112111111122 3343 6779999997432 12
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh-----CCCCCch
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL-----GPECPKP 168 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~-----~~~~~~~ 168 (259)
........+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ....+.+ ..-....
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence 223456788999999999854333332 35555555322 3599999999998754 2221111 0011123
Q ss_pred HHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 169 LKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+....+. ..++..++..+ .|+.+|++.+.+.+.+
T Consensus 144 ~~~~~~~~~~-~~~~~~Sa~~g----~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 144 GLAMAKEIGA-VKYLECSALTQ----RGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHTTC-SEEEECCTTTC----TTHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCC-cEEEEecCCCc----cCHHHHHHHHHHHHhc
Confidence 3445555543 13444444443 7899999998887753
No 114
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3.5e-17 Score=128.97 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=95.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|++++....... . +...... ...+. .++ ..+.+|||||... .. ...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~-~t~~~~~-~~~~~-~~~~~~~~~l~Dt~G~~~-----~~---~~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-D-PTLESTY-RHQAT-IDDEVVSMEILDTAGQED-----TI---QRE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-C-TTCCEEE-EEEEE-ETTEEEEEEEEECCCCCC-----CH---HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-C-CCCCceE-EEEEE-ECCEEEEEEEEECCCCCc-----cc---chh
Confidence 45689999999999999999999987642211 1 1111111 11122 233 4799999999765 11 111
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.. +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+....... ......+.
T Consensus 94 ~~----~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~---------~~~~~~~~ 159 (196)
T 2atv_A 94 GH----MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVS---------TEEGEKLA 159 (196)
T ss_dssp HH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred hh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccC---------HHHHHHHH
Confidence 22 224599999999984333222 334555544322 2235999999999986431111 12333444
Q ss_pred HHcCCcEEEEeCCCcccccchh-HHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTE-QVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~i~eLl~~i~~~~~~ 210 (259)
...+.. +|..++..+ . ++.++++.|.+.+.+
T Consensus 160 ~~~~~~--~~~~Sa~~g----~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 160 TELACA--FYECSACTG----EGNITEIFYELCREVRR 191 (196)
T ss_dssp HHHTSE--EEECCTTTC----TTCHHHHHHHHHHHHHH
T ss_pred HHhCCe--EEEECCCcC----CcCHHHHHHHHHHHHHh
Confidence 454443 444444433 6 899999988776654
No 115
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.8e-18 Score=137.42 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=97.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+|+|.+|||||||+|+|++........ +..+.......+. .++ ..+.||||||.....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------- 76 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLE-IEGKRIKAQIWDTAGQERYR----------- 76 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTT-----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEECCCccchh-----------
Confidence 345899999999999999999999876532221 1122222222222 344 478999999965322
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
......+..+|++|+|+|++++.+... ..++..+...... ..|++||+||+|+.... .+ .......+.
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~ 145 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHLR--AV-------PTEESKTFA 145 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGC--CS-------CHHHHHHHH
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc--cc-------CHHHHHHHH
Confidence 122345678899999999985443332 3344445443222 34999999999986431 11 011334445
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...+.. ++..++..+ .++.+|++.|...+.+.
T Consensus 146 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 146 QENQLL--FTETSALNS----ENVDKAFEELINTIYQK 177 (223)
T ss_dssp HHTTCE--EEECCCC-C----CCHHHHHHHHHHHHTTC
T ss_pred HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHHH
Confidence 554443 444444443 78999999988877543
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=1.5e-17 Score=129.93 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh----HHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS----EFVSKEIVK 95 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~----~~~~~~~~~ 95 (259)
++|+++|.+|||||||+|++++.... .. ..++.|....... .. .+.+|||||+.....-. +.+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~-~~~~~t~~~~~~~---~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RG-KRPGVTRKIIEIE---WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SS-SSTTCTTSCEEEE---ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cC-CCCCccceeEEEe---cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 58999999999999999999988742 22 2234444443322 12 68899999976543222 122222222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHh------------HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEE------------GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP 163 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~------------~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~ 163 (259)
++......++++++|+|.. .+... +..++..+.. ...|+++|+||+|+... . .
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~--~----- 139 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN--V--Q----- 139 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC--H--H-----
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCc--H--H-----
Confidence 2222144567888888875 22111 1112222221 12499999999998765 1 1
Q ss_pred CCCchHHHHHHHcCCcE-----EEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 164 ECPKPLKEILQLCENRR-----VLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 164 ~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
...+.+.+..+..+ .++..++..+ .++.++++.+.+.+.+..
T Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 140 ---EVINFLAEKFEVPLSEIDKVFIPISAKFG----DNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp ---HHHHHHHHHHTCCGGGHHHHEEECCTTTC----TTHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHhhhhhhccCCcEEEEecCCC----CCHHHHHHHHHHhcchhh
Confidence 12334445444321 2345554444 789999999988876643
No 117
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.75 E-value=8e-19 Score=141.13 Aligned_cols=165 Identities=15% Similarity=0.063 Sum_probs=98.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
......+|+++|.+|||||||+|+++............+.|......... ..+..+.+|||||.......
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~--------- 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGL--------- 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCC---------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHH---------
Confidence 34456899999999999999999965443211112233444433333221 23357999999995432211
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
....+..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+... .... ....+.
T Consensus 81 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~---------~~~~~~ 144 (221)
T 3gj0_A 81 --RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR--KVKA---------KSIVFH 144 (221)
T ss_dssp --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC--SSCG---------GGCCHH
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc--cccH---------HHHHHH
Confidence 1123346799999999985433322 344445544322 3499999999998754 1111 122233
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...+..+ |..++..+ .++.+++..|.+.+...
T Consensus 145 ~~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 145 RKKNLQY--YDISAKSN----YNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HHHTCEE--EECBGGGT----BTTTHHHHHHHHHHHTC
T ss_pred HHcCCEE--EEEeCCCC----CCHHHHHHHHHHHHHhC
Confidence 4444443 44444333 78999999998887654
No 118
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.75 E-value=9e-18 Score=132.16 Aligned_cols=160 Identities=9% Similarity=0.040 Sum_probs=91.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
....+|+++|++|||||||+|++++...... ..|.......+. ..+..+.+|||||...... .
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNICFTVWDVGGQDKIRP-----------L 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEE-ETTEEEEEEECC-----CT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence 4568999999999999999999987764221 112222233333 4677999999999754321 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
....+..+|++|+|+|++++.+... ...++...... ....|+++|+||+|+... ...+++... .. ..
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~------~~ 158 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-LG------LQ 158 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT------GG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-hC------cc
Confidence 1112346699999999985533322 22333332221 123599999999998654 222221110 00 00
Q ss_pred Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 175 LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 175 ~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
.+ ...+.++..++..+ .++.+|++.|.+.+
T Consensus 159 ~~~~~~~~~~~~SA~~g----~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQG----TGLYDGLDWLSHEL 189 (192)
T ss_dssp GCSSCCEEEEECBTTTT----BTHHHHHHHHHHHT
T ss_pred cccCCceEEEECcCCCc----CCHHHHHHHHHHHH
Confidence 11 11234555555444 78999999887655
No 119
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=1.5e-17 Score=147.90 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC-CCCCChHHH-HHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFV-SKEIVKC 96 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~-~~~~~~~~~-~~~~~~~ 96 (259)
..+|+++|.+|||||||+|+|++.+.... ...+++|.+.....+. .++..+.+|||||+. .+...-+.. .......
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~-~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIV-IRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEE-ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEe-cCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 37899999999999999999998764222 2234566655555444 578899999999987 543211110 0111222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
+..+|++|+|+|++++.+..+..+++.+ . ..|+++|+||+|+... ...+ .+..... .
T Consensus 321 ----~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~--~~~~---------~~~~~~~-~ 377 (482)
T 1xzp_A 321 ----IEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEK--INEE---------EIKNKLG-T 377 (482)
T ss_dssp ----HHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC--CCHH---------HHHHHHT-C
T ss_pred ----hhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECcccccc--cCHH---------HHHHHhc-C
Confidence 2345999999999877777766655443 1 2499999999998643 1111 1222211 1
Q ss_pred CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+..++..+.. . ..|+.+|++.|.+.+.
T Consensus 378 ~~~~i~iSAk--t----g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 378 DRHMVKISAL--K----GEGLEKLEESIYRETQ 404 (482)
T ss_dssp STTEEEEEGG--G----TCCHHHHHHHHHHHTH
T ss_pred CCcEEEEECC--C----CCCHHHHHHHHHHHHh
Confidence 1244444443 2 2789999999988644
No 120
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=4.6e-17 Score=140.31 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=106.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh-HHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFVSKEIVK 95 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~-~~~~~~~~~ 95 (259)
...++|+++|.+|||||||+|+|++...... ...+.|.......+. ..+..+.+|||||+.+..... ..... .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~---~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFE-DGYFRYQIIDTPGLLDRPISERNEIEK---Q 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEE-ETTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEE-ecCceEEEEeCCCccccchhhhhHHHH---H
Confidence 4568999999999999999999999874222 223445555544443 456789999999987543211 11111 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCC--CHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRF--SEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
.+......+|++|+|+|++... +... ..++..+...++ ..|+++|+||+|+... ..++ .....
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~---------~~~~~ 304 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIK---------RLEKF 304 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHH---------HHHHH
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHH---------HHHHH
Confidence 1222334679999999987432 4333 456666666542 3599999999998754 2222 12233
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+...+..++.+++. .+ .|+.+|++.|.+.+..
T Consensus 305 ~~~~~~~~~~iSA~--~g----~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 305 VKEKGLNPIKISAL--KG----TGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHTTCCCEECBTT--TT----BTHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEeCC--CC----cCHHHHHHHHHHHHHH
Confidence 33444444444433 22 7999999999887754
No 121
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=1.8e-17 Score=129.64 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=96.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
.....+|+++|.+|||||||+|++++...... ..+ |.......+. .++ ..+.+|||||.... .
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~---t~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~--------~-- 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESP---EGGRFKKEIV-VDGQSYLLLIRDEGGPPEL--------Q-- 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCT---TCEEEEEEEE-ETTEEEEEEEEECSSSCCH--------H--
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCC---CcceEEEEEE-ECCEEEEEEEEECCCChhh--------h--
Confidence 34578999999999999999999997764221 111 2111112222 445 36778999996531 0
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
. +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.......+ .......+
T Consensus 82 --~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v-------~~~~~~~~ 147 (184)
T 3ihw_A 82 --F----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVI-------DDSRARKL 147 (184)
T ss_dssp --H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCS-------CHHHHHHH
T ss_pred --e----ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccccc-------CHHHHHHH
Confidence 2 223599999999985444333 334444443211 12359999999999853210111 12234556
Q ss_pred HHHcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 173 LQLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
....+ ..++..++ ..+ .++.+++..+.+.+.+.
T Consensus 148 ~~~~~~~~~~e~Sa--~~~----~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 148 STDLKRCTYYETCA--TYG----LNVERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHTTTCEEEEEBT--TTT----BTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCeEEEecC--CCC----CCHHHHHHHHHHHHHHH
Confidence 66655 33433333 333 78999999988766543
No 122
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.75 E-value=2.3e-17 Score=127.73 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=93.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
.+..+|+++|.+|||||||+|++++..... ..+...+.. ...+. .++ ..+.+|||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~--~~~~~-~~~~~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQY--KKEML-VDGQTHLVLIREEAGAPD------------A 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEE--EEEEE-ETTEEEEEEEEECSSSCC------------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeE--EEEEE-ECCEEEEEEEEECCCCch------------h
Confidence 356899999999999999999999876522 111111111 11122 333 3688999999653 0
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
. .+..+|++|+|+|++++.+... ..+++++...... ....|+++|+||+|+........ .......+
T Consensus 68 ~----~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v-------~~~~~~~~ 136 (178)
T 2iwr_A 68 K----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV-------GDARARAL 136 (178)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS-------CHHHHHHH
T ss_pred H----HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcC-------CHHHHHHH
Confidence 1 1234599999999985544333 2334455553321 12349999999999853210000 11233444
Q ss_pred HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
....++ +.+|..++..+ .++.++++.+...+.
T Consensus 137 ~~~~~~-~~~~~~Sa~~~----~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 137 XADMKR-CSYYETXATYG----LNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHSS-EEEEEEBTTTT----BTHHHHHHHHHHHHH
T ss_pred HHhhcC-CeEEEEecccc----CCHHHHHHHHHHHHH
Confidence 444432 23344444333 789999998876654
No 123
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=1.4e-18 Score=152.21 Aligned_cols=168 Identities=15% Similarity=0.140 Sum_probs=103.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
+....++|+++|.+|+|||||+|+|++....... ...++|.......+.......+.+|||||+.+.............
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 3446789999999999999999999998753222 245566666665555333348999999998765422111111222
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
..+..+|++|+|+|+ .....+..++..+.+. + .|+++|+||+|+...... ...+.+.+
T Consensus 109 ----~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~~~~-----------~~~~~l~~ 166 (423)
T 3qq5_A 109 ----RVFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGEKAE-----------ELKGLYES 166 (423)
T ss_dssp ----HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTCCCT-----------HHHHHSSC
T ss_pred ----HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCccHH-----------HHHHHHHH
Confidence 234567999999998 5667777888888774 3 399999999998865211 11222222
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.++.. ++..++..+ .++.+|++.|.+.+++.
T Consensus 167 ~~g~~--v~~vSAktg----~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 167 RYEAK--VLLVSALQK----KGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTCC--CCCCSSCCT----TSTTTHHHHHHHHSCCC
T ss_pred HcCCC--EEEEECCCC----CCHHHHHHHHHHhhhhh
Confidence 33333 333343333 78999999999988544
No 124
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.74 E-value=3.1e-17 Score=131.37 Aligned_cols=170 Identities=15% Similarity=0.074 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|++++....... .+ |....+. .+.. .....+.||||||... +.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~---~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY---VP-TVFENYTACLETEEQRVELSLWDTSGSPY-----------YD 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC---CC-CSEEEEEEEEEC--CEEEEEEEEECCSGG-----------GT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc---CC-eeeeeEEEEEEECCEEEEEEEEECCCCHh-----------HH
Confidence 35689999999999999999999987642211 11 2111111 1111 2234789999999542 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCCCCch
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPECPKP 168 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~~~~~ 168 (259)
......+..+|++|+|+|++++.+... ..++..+.... . ..|+++|+||+|+..+. .....+. .......
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-P--STRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQ 165 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-T--TSEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEChhhccch-hhhhhhcccccCccCHHH
Confidence 233446778999999999985544333 34555565532 2 34999999999987431 0000000 0011223
Q ss_pred HHHHHHHcCCcEEEEeCCCcccccchhH-HHHHHHHHHHHHHH
Q 024985 169 LKEILQLCENRRVLFDNKTKDAATRTEQ-VGKLISLVNSVILE 210 (259)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~eLl~~i~~~~~~ 210 (259)
...+....+.. .+|..++..+ .+ +.+|++.+...+.+
T Consensus 166 ~~~~~~~~~~~-~~~e~SA~~g----~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 166 GCAIAKQLGAE-IYLEGSAFTS----EKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHTCS-EEEECCTTTC----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCC-EEEEeccCCC----cccHHHHHHHHHHHHhc
Confidence 44555665541 2444444443 67 99999998887654
No 125
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.74 E-value=2.2e-17 Score=139.40 Aligned_cols=171 Identities=18% Similarity=0.120 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH-HHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI-VKCI 97 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~-~~~~ 97 (259)
..+|+++|.+|||||||+|++++....... ...+.|...........++..+.+|||||... ....+ ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhHH
Confidence 579999999999999999999887432221 13455666666555433567999999999532 11111 1222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (259)
...+.++|++|+|+|+++..+..+. .+..++..........|+++|+||+|+... +...+... .....+..+.+..
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~-v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQ-IMMKNLSETSSEF 151 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHH-HHHHHHHHHHHHc
Confidence 3345688999999999865554443 344445443322223599999999998863 22221110 0012445566665
Q ss_pred CC-cEEEEeCCCcccccchhHHHHHHHHHH
Q 024985 177 EN-RRVLFDNKTKDAATRTEQVGKLISLVN 205 (259)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~ 205 (259)
+. ...++..++.+ .++.+++..+.
T Consensus 152 g~~~~~~~~tSa~~-----~~i~e~~~~iv 176 (307)
T 3r7w_A 152 GFPNLIGFPTSIWD-----ESLYKAWSQIV 176 (307)
T ss_dssp TCCSCEEEECCTTS-----SHHHHHHHHHH
T ss_pred CCCCeEEEEeeecC-----ChHHHHHHHHH
Confidence 52 23455555443 45666555443
No 126
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.8e-17 Score=131.88 Aligned_cols=168 Identities=16% Similarity=0.102 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|||||||+|+|++....... .+++.......+. .++ ..+.+|||||..... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~ 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY---VPTVFENYVADIE-VDGKQVELALWDTAGQEDYD-----------R 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEE-ETTEEEEEEEEECTTCTTCT-----------T
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC---CCcccceEEEEEE-ECCEEEEEEEEECCCcHHHH-----------H
Confidence 4579999999999999999999987652211 1111111111122 344 478999999975432 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCC-CCch
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPE-CPKP 168 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~-~~~~ 168 (259)
........+|++|+|+|++++.+.. +..++..+..... ..|+++|+||+|+... ....+.+ ... ....
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence 2234567889999999998432222 2345555555321 3499999999998754 2222211 100 0112
Q ss_pred HHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 169 LKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+....+.. .++..++..+ .|+.+|++.|.+.+..
T Consensus 164 ~~~~~~~~~~~-~~~~~SA~~g----~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 164 GRAMAVRIQAY-DYLECSAKTK----EGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCC-EEEEeeCCCC----CCHHHHHHHHHHHHHH
Confidence 33444444431 3444454443 7999999999887653
No 127
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=4.8e-17 Score=145.22 Aligned_cols=165 Identities=18% Similarity=0.256 Sum_probs=106.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFK-----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE 92 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~-----~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~ 92 (259)
..++|+++|.+++|||||+|+|++..... ......+.|....+..+. .++..+.+|||||. ..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh-----------~~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGH-----------AD 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSH-----------HH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCCh-----------HH
Confidence 35899999999999999999999876100 111223456555554444 46789999999994 23
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
+...+...+..+|++|+|+|++++...++.+.+..+.. .+. |+++|+||+|+.+. ..++.... .++.+
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~-----~l~~~ 153 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEM-----IMKSI 153 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHH-----HHHHH
Confidence 44444556678899999999987888888877776655 443 78999999998853 33332222 34455
Q ss_pred HHHc-CC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 173 LQLC-EN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 173 ~~~~-~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+... +. ...++..++..+ .++.+|++.|.+.++.
T Consensus 154 l~~~~~~~~~~ii~vSA~~g----~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 154 LQSTHNLKNSSIIPISAKTG----FGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHSSSGGGCCEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred HhhhcccccceEEEEECcCC----CCHHHHHHHHHHhhcC
Confidence 5444 21 122344444333 7899999999988763
No 128
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.73 E-value=4.8e-17 Score=126.93 Aligned_cols=169 Identities=13% Similarity=0.052 Sum_probs=98.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
....+|+++|.+|||||||+|++++...... . .+ |..... ..+. .++ ..+.+|||||....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~--~~-t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------- 68 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y--VP-TVFENYTASFE-IDTQRIELSLWDTSGSPYY----------- 68 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C--CC-CSEEEEEEEEE-CSSCEEEEEEEEECCSGGG-----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC-C--CC-ccceeEEEEEE-ECCEEEEEEEEECCCChhh-----------
Confidence 4568999999999999999999998764211 1 11 111111 1122 222 47899999996422
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCc
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPK 167 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~ 167 (259)
.......+..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+.... ....++... -...
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~ 144 (184)
T 1m7b_A 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYD 144 (184)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHH
T ss_pred hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHH
Confidence 1223345678899999999985433333 234455544321 35999999999987431 111111110 0112
Q ss_pred hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
....+....+.. .++..++.. ...++.++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~~-~~~e~Sa~~---~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 145 QGANMAKQIGAA-TYIECSALQ---SENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHHHHTCS-EEEECBTTT---BHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-EEEEeeecC---CCcCHHHHHHHHHHHHh
Confidence 344555555522 234444431 12789999998877653
No 129
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.73 E-value=1.7e-19 Score=142.80 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=92.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...++|+|+|.+|||||||+|+|++....... ..+.+.......+. .++ ..+.+|||||......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT---------- 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHH----------
Confidence 34689999999999999999999987642221 11222223333333 344 4799999999654321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.....+..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+.... ... ......+.
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~--~v~-------~~~~~~~~ 165 (199)
T 3l0i_B 98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKK--VVD-------YTTAKEFA 165 (199)
T ss_dssp -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--C--CCC-------SCC-CHHH
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccc--cCC-------HHHHHHHH
Confidence 12234567899999999985433222 233343433222 135999999999987541 111 11233444
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
...+.. ++..++..+ .++.+|++.|.+.+.
T Consensus 166 ~~~~~~--~~~vSA~~g----~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 166 DSLGIP--FLETSAKNA----TNVEQSFMTMAAEIK 195 (199)
T ss_dssp HTTTCC--BCCCCC-------HHHHHHHHHHTTTTT
T ss_pred HHcCCe--EEEEECCCC----CCHHHHHHHHHHHHH
Confidence 444443 344444333 899999998876554
No 130
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2e-16 Score=126.45 Aligned_cols=164 Identities=17% Similarity=0.112 Sum_probs=93.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...+|+|+|.+|||||||+|++++... +.....+.+.+.... .+. .++. .+.+|||+|... . ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~--~i~-~~~~~~~l~~~Dt~g~~~-----~-----~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER--TLM-VDGESATIILLDMWENKG-----E-----NE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEE--EEE-ETTEEEEEEEECCTTTTH-----H-----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEE--EEE-ECCeeeEEEEeecCCCcc-----h-----hh
Confidence 348999999999999999999997543 222212222222111 122 3444 568899999431 0 11
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
.....++..+|++|+|+|++++-+... ..++..+.... .....|+++|+||+|+.... .+. ....+.+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r--~v~-------~~e~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCR--EVS-------VSEGRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGC--CSC-------HHHHHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCc--eEe-------HHHHHHHH
Confidence 122445678899999999985433322 22333343321 11235999999999986431 110 01122333
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
...+.. +|..++..+ .++.+|++.+...+..
T Consensus 173 ~~~~~~--~~e~SAk~g----~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 173 VVFDCK--FIETSAAVQ----HNVKELFEGIVRQVRL 203 (211)
T ss_dssp HHHTCE--EEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence 333433 444554443 7899999988776643
No 131
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.73 E-value=1.5e-17 Score=132.21 Aligned_cols=166 Identities=15% Similarity=0.026 Sum_probs=98.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||++++++...... ..+++.......+. .++. .+.+|||||... +.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~ 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED-----------YD 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEE-CC-CEEEEEEEEECCSGG-----------GT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCC---cCCeecceeEEEEE-ECCEEEEEEEEECCCchh-----------hH
Confidence 4568999999999999999999997654221 12222222222222 3444 566999999642 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC-----CCCCc
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG-----PECPK 167 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~-----~~~~~ 167 (259)
......+..+|++++|+|++++.+..+. .++..+.... ...|+++|+||+|+... ....+... .....
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence 2334466788999999999855444332 3555555432 23599999999998765 22211110 00112
Q ss_pred hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
....+.+..+.. .+|..++..+ .|+.+|++.+.+.
T Consensus 168 ~~~~~~~~~~~~-~~~~~SA~~g----~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGAV-KYLECSALTQ----RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHT
T ss_pred HHHHHHHhcCCc-EEEEeeCCCC----CCHHHHHHHHHHH
Confidence 333444454433 2444554443 7899999987653
No 132
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=140.33 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=94.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+|+|.+|||||||+|+|++...... ..|.......+. ..+..+.||||||...... ..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~-----------~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNISFTVWDVGGQDKIRP-----------LW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEE-ETTEEEEEEECC-----CC-----------SH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEe-cCcEEEEEEECCCCHhHHH-----------HH
Confidence 346899999999999999999998774221 124444444444 5678999999999543221 12
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
...+..+|++|+|+|+++.-+... ..+...+..... ...|++||+||+|+... ...+++. .....
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~--~~~~~i~---------~~~~~ 293 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA--MNAAEIT---------DKLGL 293 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC--CCHHHHH---------HHHTC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCCcc--cCHHHHH---------HHhch
Confidence 223457799999999985544332 222222222111 23499999999998765 2222111 11111
Q ss_pred c---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 C---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
. ...+.+|..++..+ .|+.+|++.|.+.+.
T Consensus 294 ~~~~~~~~~~~~vSAk~g----~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 294 HSLRHRNWYIQATCATSG----DGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTCCSSCEEEEECBTTTT----BTHHHHHHHHHHHHT
T ss_pred hhhhcCCCEEEEEECCCC----cCHHHHHHHHHHHHH
Confidence 0 12234555555444 799999999888764
No 133
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.73 E-value=6.9e-17 Score=128.51 Aligned_cols=172 Identities=13% Similarity=0.050 Sum_probs=98.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHH
Q 024985 14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVS 90 (259)
Q Consensus 14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~ 90 (259)
+......+|+++|.+|||||||+|++++...... . . .|....+ ..+. .++ ..+.||||||....
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~--~-~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-------- 89 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y--V-PTVFENYTASFE-IDTQRIELSLWDTSGSPYY-------- 89 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C--C-CCSEEEEEEEEE-SSSSEEEEEEEEECCSGGG--------
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-c--C-CccceeEEEEEE-ECCEEEEEEEEeCCCcHhh--------
Confidence 3345678999999999999999999998764211 1 1 1211111 1122 232 47999999996422
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----C
Q 024985 91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----E 164 (259)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~ 164 (259)
.......+..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+.... ....++... -
T Consensus 90 ---~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v 162 (205)
T 1gwn_A 90 ---DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPV 162 (205)
T ss_dssp ---TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCC
T ss_pred ---hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhccch-hhhhhhcccccCCC
Confidence 1122345678899999999985433332 234455554322 35999999999987431 111111110 0
Q ss_pred CCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 165 CPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.......+.+..+.. .+|..++.. ...++.+++..+.+.+-
T Consensus 163 ~~~~~~~~~~~~~~~-~~~e~SAk~---~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 163 SYDQGANMAKQIGAA-TYIECSALQ---SENSVRDIFHVATLACV 203 (205)
T ss_dssp CHHHHHHHHHHHTCS-EEEECCTTT---CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-EEEEeeecc---CCcCHHHHHHHHHHHHh
Confidence 112344555555532 244444431 12789999998877653
No 134
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.72 E-value=1e-16 Score=137.87 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---CCc-----------------------cee--------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS---SGV-----------------------TKT-------------- 57 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~~-----------------------T~~-------------- 57 (259)
..++|+|+|.+|||||||+|+|+|....+..... .+. |..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998754222110 011 000
Q ss_pred ---------eEEEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHhHH-HH
Q 024985 58 ---------CEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAK-DGIHAVLLVFSVRNRFSEEGG-AA 124 (259)
Q Consensus 58 ---------~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~-~~ 124 (259)
.....+....+..+.||||||+...... .......+...+..+. ...+++|+|+|++..+...+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0001111122467999999999753211 1111122222222222 344677778888755665553 23
Q ss_pred HHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 125 IHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 125 l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
++.+.. ...|+++|+||+|+...
T Consensus 190 ~~~~~~-----~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 190 AKEVDP-----QGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHCT-----TCTTEEEEEECGGGSCT
T ss_pred HHHhCc-----CCCceEEEeccccccCc
Confidence 333322 23499999999999854
No 135
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.72 E-value=6.7e-17 Score=126.59 Aligned_cols=162 Identities=19% Similarity=0.106 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|||||||+|++++.... ... .+ |....+......++ ..+.+|||||...... +.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~--~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~ 86 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-SEY--DP-NLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CE 86 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCC--CT-TCCEEEEEEEEETTEEEEEEEEECCC---CCC--------TH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC-ccc--CC-CccceeeEEEEECCEEEEEEEEECCCCCcchh--------HH
Confidence 35689999999999999999999987642 111 11 22111111111233 4788999999754321 11
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
..+..+|++++|+|++++-+... ..++..+...... ....|+++|+||+|+.... .+ .......+
T Consensus 87 ----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~ 153 (187)
T 3c5c_A 87 ----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR--QV-------TKAEGVAL 153 (187)
T ss_dssp ----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC--SS-------CHHHHHHH
T ss_pred ----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC--cc-------CHHHHHHH
Confidence 12346799999999984433322 2344445443210 1234999999999986431 11 11234455
Q ss_pred HHHcCCcEEEEeCCC-cccccchhHHHHHHHHHHHHHH
Q 024985 173 LQLCENRRVLFDNKT-KDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~-~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
....+.. ++..++ ..+ .++.++++.|.+.+.
T Consensus 154 ~~~~~~~--~~e~Sa~~~g----~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 154 AGRFGCL--FFEVSACLDF----EHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHTCE--EEECCSSSCS----HHHHHHHHHHHHHHH
T ss_pred HHHcCCc--EEEEeecCcc----ccHHHHHHHHHHHHh
Confidence 5555544 444444 333 799999998877654
No 136
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=2.4e-16 Score=135.76 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=99.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 98 (259)
.+.|+++|++|||||||+|+|++...... ...++|.+.....+. .++..+.++||||+..... ..+...+...+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~-~~g~~v~l~DT~G~i~~lp--~~lve~f~~tl~ 253 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIP-INNRKIMLVDTVGFIRGIP--PQIVDAFFVTLS 253 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEE-ETTEEEEEEECCCBCSSCC--GGGHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEE-ECCEEEEEEeCCCchhcCC--HHHHHHHHHHHH
Confidence 34599999999999999999999875222 234455555444444 5678899999999754211 112223333332
Q ss_pred hcCCCccEEEEEEeCCCCC--CHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 99 MAKDGIHAVLLVFSVRNRF--SEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
....+|++++|+|++++. .... ..+.+.+.. ++. ...|+++|+||+|+... . ...... .+..+...
T Consensus 254 -~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~-----~~~~l~~~ 322 (364)
T 2qtf_A 254 -EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKING--D-LYKKLD-----LVEKLSKE 322 (364)
T ss_dssp -GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCCS--C-HHHHHH-----HHHHHHHH
T ss_pred -HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCCc--h-HHHHHH-----HHHHHHHH
Confidence 456779999999997443 1111 122334444 221 13499999999998754 1 111000 11122233
Q ss_pred c-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985 176 C-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG 213 (259)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~ 213 (259)
. ...+.++..++.++ .++.+|++.|.+.+.....
T Consensus 323 l~~~~~~~~~~SA~~g----~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 323 LYSPIFDVIPISALKR----TNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp HCSCEEEEEECBTTTT----BSHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCcEEEEECCCC----cCHHHHHHHHHHHhcccCC
Confidence 3 22223344444443 7999999999998877544
No 137
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.72 E-value=2.2e-17 Score=131.68 Aligned_cols=170 Identities=16% Similarity=0.066 Sum_probs=100.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|+|||||+|++++..... .. .+++.......+. .++ ..+.+|||||......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DY--IPTVFDNFSANVA-VDGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCS-SC--CCSSCCCEEEEEE-CSSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCc-cC--CCccceeEEEEEE-ECCEEEEEEEEECCCcHHHHH----------
Confidence 356899999999999999999999766421 11 1111111111222 333 4899999999764321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh-hCCCCCchHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY-LGPECPKPLKE 171 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~-~~~~~~~~l~~ 171 (259)
.....+..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+... ...... ...-.......
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 12335678899999999985433332 135555554322 3599999999998754 211000 00001123445
Q ss_pred HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+....+.. .+|..++..+ .++.++++.+.+.+.+.
T Consensus 147 ~~~~~~~~-~~~~~Sa~~g----~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 147 LRKQIGAA-AYIECSSKTQ----QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHTCS-EEEECCTTTC----TTHHHHHHHHHHHHHCC
T ss_pred HHHHcCCc-eEEEccCCCC----CCHHHHHHHHHHHHhhh
Confidence 55555531 2344444443 78999999998877654
No 138
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.71 E-value=2e-17 Score=153.57 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE--------EEEe------------------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ--------RTML------------------------ 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~--------~~~~------------------------ 65 (259)
..++|+|+|.+|+|||||+|+|+|....+.+. .++|..+... ....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~--~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDV--NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCC--CTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC--CCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 56899999999999999999999998655443 2223100000 0000
Q ss_pred ---------------------eCC----cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh
Q 024985 66 ---------------------KDG----QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120 (259)
Q Consensus 66 ---------------------~~~----~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~ 120 (259)
.+. ..+.||||||+.+... ...........+|++|||+|++++++..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~ 217 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLG 217 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchh
Confidence 000 3689999999764211 1122222335679999999998778877
Q ss_pred HHHHHH-HHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 121 GGAAIH-SLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 121 ~~~~l~-~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+...+. .+.. . ..|+++|+||+|+...
T Consensus 218 e~~~l~~~l~~-~----~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 218 ERRYLENYIKG-R----GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHTTT-S----CCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHh-h----CCCEEEEEECcccccc
Confidence 765553 2222 2 2489999999998743
No 139
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.71 E-value=1.4e-17 Score=129.30 Aligned_cols=167 Identities=17% Similarity=0.058 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
....+|+++|.+|+|||||+|++++..... . ..+++.......+. .+ ...+.+|||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------- 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-D--YVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYN----------- 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC--------CEEECCCC-CTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC-C--CCCeeeeeEEEEEE-ECCEEEEEEEEECCCChhhh-----------
Confidence 346899999999999999999999766321 1 11111111101111 22 2356799999965422
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh---hCCCCCchH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY---LGPECPKPL 169 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~---~~~~~~~~l 169 (259)
......+..+|++++|+|++++.+.... .++..+..... ..|+++|+||+|+... ...... ...-.....
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~ 145 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQG 145 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC--cccccccccCCCCCHHHH
Confidence 2223456678999999999854333332 35555555322 3599999999998754 221000 000011233
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..+....+.. .++..++..+ .++.+|++.+.+.+
T Consensus 146 ~~~~~~~~~~-~~~~~Sa~~~----~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 146 EELKKLIGAP-AYIECSSKSQ----ENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHHTCS-EEEECCTTTC----TTHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-EEEEEECCCC----CCHHHHHHHHHHHH
Confidence 4455555531 2344444443 78999999887655
No 140
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.71 E-value=3.8e-16 Score=124.21 Aligned_cols=172 Identities=13% Similarity=0.192 Sum_probs=97.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC---hHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFVSKEIV 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~---~~~~~~~~~ 94 (259)
...+|+++|++|||||||+|+|+|...........+.|...... . ..+ .+.++||||+...... ...+...+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~-~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--E-VAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--E-EET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--E-ecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 45789999999999999999999876211111223444333322 1 222 6789999998643211 112222222
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
..+ .....++++++|+|++.+.+..+..+..++.. .+ .|+++|.||+|.... ......+ ..++.++.
T Consensus 101 ~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~-----~~~~~~~~ 167 (210)
T 1pui_A 101 EYL-EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQL-----NMVREAVL 167 (210)
T ss_dssp HHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHH-----HHHHHHHG
T ss_pred HHH-HhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHH-----HHHHHHHH
Confidence 222 22356799999999986666655555555543 33 388999999998754 2111101 12334444
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.....+..++.++ .++.++++.|.+.+.+
T Consensus 168 ~~~~~~~~~~~Sal~~----~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 168 AFNGDVQVETFSSLKK----QGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGCSCEEEEECBTTTT----BSHHHHHHHHHHHHC-
T ss_pred hcCCCCceEEEeecCC----CCHHHHHHHHHHHHhh
Confidence 4443444555555444 7899999998887654
No 141
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.71 E-value=5.7e-17 Score=145.65 Aligned_cols=163 Identities=10% Similarity=0.046 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+++|.+|||||||+|+|++... ... ..|....+..+. ..+..+.||||||.... ....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~~---~~T~~~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS--VTT---IPTVGFNVETVT-YKNVKFNVWDVGGQDKI-----------RPLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC--CCC---CCCSSEEEEEEE-SSSCEEEEEEECCCGGG-----------SGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC--CCc---CCccceeEEEEE-eCCEEEEEEECCCcHHH-----------HHHH
Confidence 458999999999999999999998773 111 224444444444 56789999999995432 2223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
..++..+|++|+|+|++++.+... ...++..+... ....|++||+||+|+... ...++ +...
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~------------~~~~ 447 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHE------------IQEK 447 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHH------------HHHH
T ss_pred HHHhccCCEEEEEEECcchhHHHH--HHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHH------------HHHH
Confidence 456778899999999985533332 22222222211 123599999999998754 22221 1111
Q ss_pred cC------CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCC
Q 024985 176 CE------NRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYS 217 (259)
Q Consensus 176 ~~------~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~ 217 (259)
.+ ..+.++..++..+ .|+.+|++.|.+.+........+
T Consensus 448 ~~~~~~~~~~~~~~~~SA~~g----~gi~~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 448 LGLTRIRDRNWYVQPSCATSG----DGLYEGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp TTCTTCCSSCEEEEECBTTTT----BTHHHHHHHHHHHCC--------
T ss_pred hchhhhhcCCeEEEEEECCCC----CCHHHHHHHHHHHHHhcCCCCCc
Confidence 11 1233555555444 79999999998887665444433
No 142
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.71 E-value=3e-16 Score=145.35 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=83.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee----------------------------------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT---------------------------------------- 57 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~---------------------------------------- 57 (259)
..++|+|+|.+++|||||+|+|+|...++.+.. .+|+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 457999999999999999999999886554432 12211
Q ss_pred -----------eEEEEEEeeCCcEEEEEeCCCCCCCCC--Ch----HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh
Q 024985 58 -----------CEMQRTMLKDGQVVNVIDTPGLFDSSA--DS----EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120 (259)
Q Consensus 58 -----------~~~~~~~~~~~~~~~liDTPG~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~ 120 (259)
.....+.......++||||||++.... .. ..+...+..++. ..+|++|+|+|++..+...
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---~~aDlIL~VVDAs~~~~~~ 204 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANS 204 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---STTEEEEEEEETTSCSSSC
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---cCCcEEEEEEcCCCCcchh
Confidence 111112223344689999999987431 11 223322333322 5789999999998777777
Q ss_pred HH-HHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 121 GG-AAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 121 ~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+. .+++.+.. .+ .|+++|+||+|++..
T Consensus 205 d~l~ll~~L~~-~g----~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 205 DALKIAKEVDP-QG----QRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHHHHHCT-TC----SSEEEEEECTTSSCT
T ss_pred HHHHHHHHHHh-cC----CCEEEEEeCcccCCc
Confidence 75 55555543 22 499999999999865
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.71 E-value=1.7e-16 Score=140.19 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=82.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEe
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTML 65 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~ 65 (259)
......+|+++|.+|+|||||+|+|++....... ....+.|.+.....+.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~- 91 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE- 91 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe-
Confidence 3456689999999999999999999654211000 0113566666665555
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HhHHHHHHHHHHHhcccccC
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFS-------EEGGAAIHSLESLFGKKVFD 138 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~ 138 (259)
..+..+.||||||.. .+...+...+..+|++|+|+|++.+.. .++.+.+..+.. .+. .
T Consensus 92 ~~~~~~~iiDTPGh~-----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~ 156 (439)
T 3j2k_7 92 TEKKHFTILDAPGHK-----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---K 156 (439)
T ss_pred cCCeEEEEEECCChH-----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---C
Confidence 467799999999953 333344445567899999999986654 455555555544 343 2
Q ss_pred eEEEEEeCCCCCC
Q 024985 139 YMIVVFTGGNELE 151 (259)
Q Consensus 139 ~~ivV~nk~D~~~ 151 (259)
++++|+||+|+..
T Consensus 157 ~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 157 HLIVLINKMDDPT 169 (439)
T ss_pred eEEEEeecCCCcc
Confidence 4999999999864
No 144
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.70 E-value=9.2e-17 Score=143.68 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=94.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc-----------------------------ccCCCCCcceeeEEEEEEeeCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFK-----------------------------SKAGSSGVTKTCEMQRTMLKDG 68 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~ 68 (259)
...+|+++|.+|+|||||+|+|++..... ......+.|.......+. ..+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCC
Confidence 45899999999999999999997551100 001113556666555554 467
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeEE
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYMI 141 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 141 (259)
..+.||||||..+ +...+...+..+|++|+|+|++.+ +.....+.+..+.. ++. .|++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 7999999999743 233334445678999999999865 34555555555544 342 3799
Q ss_pred EEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC---cEEEEeCCCccc
Q 024985 142 VVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN---RRVLFDNKTKDA 190 (259)
Q Consensus 142 vV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 190 (259)
||+||+|+........++... .+..++..++. ...++..++..+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~-----~~~~~l~~~g~~~~~~~~i~iSA~~g 222 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKS-----KLLPYLVDIGFFEDNINWVPISGFSG 222 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHH-----HHHHHHHHHTCCGGGEEEEECCSSSC
T ss_pred EEEECcCcccchHHHHHHHHH-----HHHHHHHHcCCCcccceEEEEeeecC
Confidence 999999987642223332222 34455555543 344555555443
No 145
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.70 E-value=2.8e-16 Score=135.58 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee----------------------------------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT---------------------------------------- 57 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~---------------------------------------- 57 (259)
.-+.|+|+|.+|||||||+|+|+|...++.+... +|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~--vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS--CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc--ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 4569999999999999999999998764444221 1111
Q ss_pred --------------eEEEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcCCCccEEEEEEeCCC-CCCHh
Q 024985 58 --------------CEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAKDGIHAVLLVFSVRN-RFSEE 120 (259)
Q Consensus 58 --------------~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-~~~~~ 120 (259)
.....+.......+.+|||||+...... .......+......++..+|++|+|++..+ ....
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~- 189 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT- 189 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-
Confidence 0011111122447899999999865321 112333444555555667899999998752 2222
Q ss_pred HHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 121 ~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..++..+..... ...|+++|+||+|+...
T Consensus 190 -~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 190 -SDAIKISREVDP--SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp -CHHHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred -HHHHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence 234444444221 23499999999999865
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=1.6e-15 Score=132.87 Aligned_cols=168 Identities=15% Similarity=0.254 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEEee--------------C--------CcEEEE
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTMLK--------------D--------GQVVNV 73 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~~~--------------~--------~~~~~l 73 (259)
....+|+++|.+++|||||+++|+|...... .....+.|....+...... . ...+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4568999999999999999999997642111 1112344554433222110 1 157999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 74 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
|||||. ..+...+......+|++|+|+|++++. ..+..+.+..+.. ++. .|+++|+||+|+...
T Consensus 86 iDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 999993 234445555667889999999998665 6676666665543 332 389999999998765
Q ss_pred CcccHHhhhCCCCCchHHHHHHHcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 153 NDETLEDYLGPECPKPLKEILQLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
. ...... ..+++++.... ..+.++..++..+ .++.+|++.|.+.++.
T Consensus 151 ~--~~~~~~-----~~i~~~l~~~~~~~~~~i~vSA~~g----~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 K--QAEENY-----EQIKEFVKGTIAENAPIIPISAHHE----ANIDVLLKAIQDFIPT 198 (408)
T ss_dssp T--TTTTHH-----HHHHHHHTTSTTTTCCEEEC----------CHHHHHHHHHHHSCC
T ss_pred H--HHHHHH-----HHHHHHHhhcCCCCCeEEEeeCCCC----CCHHHHHHHHHHhCCC
Confidence 2 111100 12233333211 1223444444433 7899999999886653
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.70 E-value=6.9e-19 Score=157.93 Aligned_cols=162 Identities=13% Similarity=0.143 Sum_probs=110.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+++|.+|+|||||+|+|++...... ..++.|.....+.+.+..+..+.||||||..... ...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-----------~~~ 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-----------AMR 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-----------TSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-----------HHH
Confidence 357899999999999999999998765332 3455666655554443356789999999965432 223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH---HH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI---LQ 174 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~---~~ 174 (259)
...+..+|++|+|+|++++..+++.+.+..+.. .+ .|+++|+||+|+.......... .+... .+
T Consensus 70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~-~~----vPiIVViNKiDl~~~~~~~v~~--------~l~~~~~~~e 136 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAKD-AH----VPIVLAINKCDKAEADPEKVKK--------ELLAYDVVCE 136 (537)
T ss_dssp BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHT-TT----CCEEECCBSGGGTTTSCCSSSS--------HHHHTTSCCC
T ss_pred HHHHccCCEEEEEEECCCCccHHHHHHHHHHHH-cC----CcEEEEEecccccccchHHHHH--------HHHhhhhhHH
Confidence 345667899999999998888888877776654 33 3999999999987542111111 11111 11
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.++..+.++..++..+ .++.+|++.+..++.
T Consensus 137 ~~~~~~~iv~vSAktG----~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 137 DYGGDVQAVHVSALTG----ENMMALAEATIALAE 167 (537)
T ss_dssp CSSSSEEECCCCSSSS----CSSHHHHHHHHHHHT
T ss_pred hcCCCceEEEEECCCC----CCchhHHHHHHHhhh
Confidence 2233445666666554 789999999988764
No 148
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=1.2e-16 Score=139.93 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcc--------------eeeEEE--EEE--eeCCcEEEEEeCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVT--------------KTCEMQ--RTM--LKDGQVVNVIDTPG 78 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T--------------~~~~~~--~~~--~~~~~~~~liDTPG 78 (259)
.+..+|+++|.+|+|||||+|+|++....... .....+ ...... ... ......+.+|||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45689999999999999999999985421100 000000 000000 000 01125799999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH
Q 024985 79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL 157 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~ 157 (259)
..+ +...+...+..+|++|+|+|++.+. ..+..+.+..+.. ++. +|+++|+||+|+.+. ...
T Consensus 85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~---~~iivviNK~Dl~~~--~~~ 147 (403)
T 3sjy_A 85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGV---KNLIIVQNKVDVVSK--EEA 147 (403)
T ss_dssp CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH--HHH
T ss_pred cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCC---CCEEEEEECccccch--HHH
Confidence 532 2223333445779999999999765 6666777776655 332 389999999998854 333
Q ss_pred HhhhCCCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 158 EDYLGPECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
.+... .+++.+..+.. ...++..++..+ .++.+|++.|.+.++..
T Consensus 148 ~~~~~-----~i~~~l~~~~~~~~~ii~vSA~~g----~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 148 LSQYR-----QIKQFTKGTWAENVPIIPVSALHK----INIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHH-----HHHHHHTTSTTTTCCEEECBTTTT----BSHHHHHHHHHHHSCCC
T ss_pred HHHHH-----HHHHHHHhhCCCCCEEEEEECCCC----cChHHHHHHHHHhCCCC
Confidence 22221 23333332221 222344444333 78999999998876543
No 149
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=2.8e-16 Score=138.72 Aligned_cols=153 Identities=10% Similarity=0.107 Sum_probs=93.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc---------C---C-------------------CCCcceeeEEEEEEe
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK---------A---G-------------------SSGVTKTCEMQRTML 65 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---------~---~-------------------~~~~T~~~~~~~~~~ 65 (259)
...++|+++|.+|+|||||+|+|++....... . . ..+.|....+..+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~- 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS- 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence 34589999999999999999999865310000 0 0 01334444433333
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
..+..+.||||||..+ +...+...+..+|++|+|+|++++...+..+.+..+.. .+. +|+++|+|
T Consensus 101 ~~~~~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvviN 165 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 165 (434)
T ss_dssp CSSEEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred cCCceEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEE
Confidence 4567899999999643 12222234467899999999998888887777766654 332 37999999
Q ss_pred CCCCCCCCcccHHhhhCCCCCchHHHHHHHcC--C-cEEEEeCCCccc
Q 024985 146 GGNELEDNDETLEDYLGPECPKPLKEILQLCE--N-RRVLFDNKTKDA 190 (259)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~ 190 (259)
|+|+...+.+.++... ..++.+++.++ . .+.++..++..+
T Consensus 166 K~Dl~~~~~~~~~~i~-----~~~~~~~~~~g~~~~~~~~i~vSA~~g 208 (434)
T 1zun_B 166 KMDLNGFDERVFESIK-----ADYLKFAEGIAFKPTTMAFVPMSALKG 208 (434)
T ss_dssp CTTTTTSCHHHHHHHH-----HHHHHHHHTTTCCCSEEEEEECCTTTC
T ss_pred cCcCCcccHHHHHHHH-----HHHHHHHHHhCCCccCceEEEEeccCC
Confidence 9998753212222221 13555566655 2 234555554443
No 150
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.69 E-value=1.6e-16 Score=124.00 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=86.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCcceeeEEEEEEe------eCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR-AFKSKAGSSGVTKTCEMQRTML------KDGQVVNVIDTPGLFDSSADSEFVSK 91 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~------~~~~~~~liDTPG~~~~~~~~~~~~~ 91 (259)
..+|+++|++|||||||+|.+++.. .+... ...|....+..... .....+.+|||||..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~---~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------- 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------- 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHH-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCC---cceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------
Confidence 3689999999999999999999863 22111 11222222211110 134589999999942
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL 169 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l 169 (259)
.+.......+.+++++++|+|++++.... -..++..+.... ...|+++|+||+|+... ........ ...
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~----~~~ 138 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDE--KQRKACMS----KIT 138 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCH--HHHHHHHH----HHH
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccc--hhhHHHHH----HHH
Confidence 11111122233568999999998442211 123344333321 13499999999998643 22111100 011
Q ss_pred HHHHHHcCCc--EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 170 KEILQLCENR--RVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+.+..+.. ..++..++..+ ..++.+|++.|.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~---~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 139 KELLNKRGFPAIRDYHFVNATEE---SDALAKLRKTIINESLN 178 (184)
T ss_dssp HHTTTCTTSCEEEEEEECCTTSC---CHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcchhheEEEecccC---chhHHHHHHHHHHHHhc
Confidence 1222222322 12444554433 14899999988777654
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.68 E-value=3.4e-16 Score=136.65 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=107.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc------cc----cc----CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA------FK----SK----AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~----~~----~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~ 83 (259)
+..+|+++|.+|+|||||+++|++... +. .. ....+.|.......+. ..+..+.||||||..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~--- 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA--- 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChH---
Confidence 457999999999999999999986411 00 00 0023445554443333 356799999999942
Q ss_pred CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhhhC
Q 024985 84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDYLG 162 (259)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~~~ 162 (259)
.+...+...+..+|++|+|+|++++...+..+.+..+.. .+. | +++|+||+|+..+ ....+.+
T Consensus 78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~--~~~~~~~- 141 (397)
T 1d2e_A 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD--SEMVELV- 141 (397)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC--HHHHHHH-
T ss_pred --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC--HHHHHHH-
Confidence 344445556778999999999998888887777766654 343 6 7899999998753 2211111
Q ss_pred CCCCchHHHHHHHcCC---cEEEEeCCCccccc-----chhH-HHHHHHHHHHHHHH
Q 024985 163 PECPKPLKEILQLCEN---RRVLFDNKTKDAAT-----RTEQ-VGKLISLVNSVILE 210 (259)
Q Consensus 163 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~-i~eLl~~i~~~~~~ 210 (259)
...++++++.++. .+.++..++..+.+ ...+ +.+|++.|.+.++.
T Consensus 142 ---~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 142 ---ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp ---HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ---HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 1134556665552 12344444332211 1125 88999999887754
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=5.5e-16 Score=135.93 Aligned_cols=168 Identities=14% Similarity=0.225 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEEee--------------C--------CcEEEE
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTMLK--------------D--------GQVVNV 73 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~~~--------------~--------~~~~~l 73 (259)
.+..+|+++|.+++|||||+++|+|...... .....+.|....+....+. . ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 4568999999999999999999997642111 1112344554443322211 0 157999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 74 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
|||||.. .+...+......+|++|+|+|++++. ..+..+.+..+.. ++. .|+++|+||+|+...
T Consensus 88 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 88 IDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVDK 152 (410)
T ss_dssp EECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH
T ss_pred EECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCCCH
Confidence 9999932 33344444555779999999998665 6677777766654 332 389999999998864
Q ss_pred CcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 153 NDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
....+... .++.++... ...+.++..++..+ .++.+|++.|.+.++.
T Consensus 153 --~~~~~~~~-----~i~~~l~~~~~~~~~~i~vSA~~g----~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 --EKALENYR-----QIKEFIEGTVAENAPIIPISALHG----ANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --HHHHHHHH-----HHHHHHTTSTTTTCCEEECBTTTT----BSHHHHHHHHHHHSCC
T ss_pred --HHHHHHHH-----HHHHHHHhcCcCCCeEEEeeCCCC----CCHHHHHHHHHHhCCC
Confidence 22211111 233333321 11223344444333 7899999999887654
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.68 E-value=8.7e-17 Score=144.67 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc----------------cc----CCCCCcceeeEEEEEEeeCCcEEEEEeCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFK----------------SK----AGSSGVTKTCEMQRTMLKDGQVVNVIDTP 77 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~----------------~~----~~~~~~T~~~~~~~~~~~~~~~~~liDTP 77 (259)
..++|+++|.+|||||||+|+|++..... .. ....+.|.......+. ..+..+.|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-YKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-ETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-eCCEEEEEEECC
Confidence 46899999999999999999997211100 00 0002333333334344 467899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 78 GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
|+.+... .. ..++..+|++|+|+|++.+.+..+..++..+.. .+ .|+++|+||+|+...
T Consensus 91 G~~df~~-------~~----~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~-~~----iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTE-------DT----YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL-RH----TPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCH-------HH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT-TT----CCEEEEEECTTSCCS
T ss_pred CchhHHH-------HH----HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEeCCCCccc
Confidence 9876421 22 234456799999999998888888887776654 33 399999999998654
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.68 E-value=9.2e-17 Score=140.68 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=81.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCC-------cccc----c----CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRR-------AFKS----K----AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~-------~~~~----~----~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
.....+|+++|.+|+|||||+|+|++.. .+.. . ....+.|.......+. ..+..+.||||||..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChH
Confidence 3456899999999999999999998731 0000 0 0012344444433333 456799999999975
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELE 151 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~ 151 (259)
+ +...+...+..+|++|+|+|++++...+..+++..+.. .+. | +++|+||+|+..
T Consensus 87 ~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~i----p~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 D-----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFMNKVDMVD 142 (405)
T ss_dssp G-----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCC
T ss_pred H-----------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CEEEEEEECccccC
Confidence 3 22223334557799999999987888888777776655 343 6 889999999875
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.7e-16 Score=123.40 Aligned_cols=120 Identities=8% Similarity=0.104 Sum_probs=70.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 96 (259)
...++|+++|.+|||||||+|+|++........... .|... . ..+..+.+|||||........ ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~-~~~~~-----~-~~~~~~~l~Dt~G~~~~~~~~-------~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAA-----D-YDGSGVTLVDFPGHVKLRYKL-------SDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------C-CCCTTCSEEEETTCCBSSCCH-------HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCC-Cceee-----e-ecCCeEEEEECCCCchHHHHH-------HHH
Confidence 456899999999999999999999876422111111 11111 1 245678999999987543321 112
Q ss_pred HhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcc-----cccCeEEEEEeCCCCCCC
Q 024985 97 IGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGK-----KVFDYMIVVFTGGNELED 152 (259)
Q Consensus 97 ~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~-----~~~~~~ivV~nk~D~~~~ 152 (259)
+......+|++|+|+|++ +.-+. .....++...+.. ....|+++|+||+|+...
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKL--TTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHH--HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhhcccCCEEEEEEECCCCchhH--HHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 222224569999999997 22111 1222233322211 123599999999999865
No 156
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=3.8e-16 Score=134.86 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+++|||||+|+|+ ..+.|.......+. ..+..+.||||||..+. ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHH----H
Confidence 89999999999999999998 12344445554444 45678999999997643 222222 2
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE-EEEEe-CCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM-IVVFT-GGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
+..+|++|+|+| +.+...+..+.+..+.. ++. |. ++|+| |+|+ .. ..++... ..++.++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~-----~~i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELK-----AKLKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHH-----HHHHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHH-----HHHHHHHHhcCC
Confidence 346799999999 76777777777776655 443 55 88999 9998 43 2222111 123333333321
Q ss_pred -cEEEEe--CCCcccccchhHHHHHHHHHHHHHHH
Q 024985 179 -RRVLFD--NKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 179 -~~~~~~--~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
.+.++. .++... ....|+.+|++.|.+.++.
T Consensus 147 ~~~~ii~~~~SA~~~-~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWECISLNTNKSAK-NPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCEEEECCCCTTSS-STTTTHHHHHHHHHHHHHH
T ss_pred CceEEEecccccccC-cCCCCHHHHHHHHHhhccc
Confidence 223444 454430 0137999999998887764
No 157
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=3.7e-17 Score=130.95 Aligned_cols=122 Identities=8% Similarity=0.143 Sum_probs=73.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
....++|+++|++|+|||||+|+|++......... ...|.... .....+.+|||||..... ..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~~------~~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAAD------YDGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEETT------GGGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEEE------eeCceEEEEECCCcHHHH-------HHHHH
Confidence 45668999999999999999999998764221111 11111111 244578999999975431 12222
Q ss_pred HHhhcCCCccEEEEEEeCC-CC--CCHhHHHHHHHHHHHhc--ccccCeEEEEEeCCCCCCC
Q 024985 96 CIGMAKDGIHAVLLVFSVR-NR--FSEEGGAAIHSLESLFG--KKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~-~~--~~~~~~~~l~~l~~~~~--~~~~~~~ivV~nk~D~~~~ 152 (259)
++......+|++|+|+|++ +. +..... ++..+..... .....|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 2222223469999999998 32 332222 3332222111 1123599999999999865
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.4e-16 Score=142.48 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=96.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC-----------------------------CCCCcceeeEEEEEEeeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKA-----------------------------GSSGVTKTCEMQRTMLKD 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~ 67 (259)
...++|+++|.+|+|||||+|+|++........ ...+.|.......+. ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-TH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-CS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-cC
Confidence 456899999999999999999999764211100 013556655555444 46
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeE
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYM 140 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (259)
+..+.||||||+.+ +...+...+..+|++|+|+|++.+ ...+..+.+..+.. ++. .++
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 77999999999742 445556677889999999999843 33455555554443 332 369
Q ss_pred EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC---cEEEEeCCCccc
Q 024985 141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN---RRVLFDNKTKDA 190 (259)
Q Consensus 141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 190 (259)
+||+||+|+........++... .+..++..++. ...++..++..+
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~-----~l~~~l~~~g~~~~~~~~i~vSA~tG 356 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKS-----KLLPYLVDIGFFEDNINWVPISGFSG 356 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHH-----HHHHHHHHHTCCGGGCEEEECCTTTC
T ss_pred EEEEecccccchhHHHHHHHHH-----HHHHHHHhhcccccCccEEeeecccC
Confidence 9999999988642222222221 34555555554 234455554443
No 159
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.65 E-value=7.1e-16 Score=121.31 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=89.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~ 94 (259)
...+|+++|.+|||||||+|++++... +.....+.+.+... ..+. .++. .+.+|||+|...... .+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~Dt~~~~~~~~-------~~- 73 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLM-VDGESATIILLDMWENKGENE-------WL- 73 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEE--EEEE-ETTEEEEEEEECCCCC----C-------TT-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEE--EEEE-ECCeEEEEEEEEeccCcchhh-------hH-
Confidence 458999999999999999999986432 22211112222211 1222 3444 567899999542100 01
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
...++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|+.....-.. ...+.+.
T Consensus 74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~---------~~~~~~a 141 (192)
T 2cjw_A 74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSV---------SEGRAXA 141 (192)
T ss_dssp --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCH---------HHHHHHH
T ss_pred --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccH---------HHHHHHH
Confidence 1112334699999999985433332 234444444321 12349999999999764210011 1112222
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
...+.. ++..++..+ .++.+++..+...+.
T Consensus 142 ~~~~~~--~~e~SA~~g----~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 142 VVFDXK--FIETSAAVQ----HNVKELFEGIVRQVR 171 (192)
T ss_dssp HHTTCE--EEECBTTTT----BSHHHHHHHHHHHHH
T ss_pred HHhCCc--eEEeccccC----CCHHHHHHHHHHHHH
Confidence 333333 444554443 789999998877654
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.65 E-value=1.1e-15 Score=129.82 Aligned_cols=168 Identities=15% Similarity=0.036 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|.+|+|||||+|++++...... ..+++.......+ ..++. .+.+|||||.... ..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANV-MVDGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCS---CCCCSEEEEEEEE-EETTEEEEEEEEEECCCGGG-----------TT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcc---cCCcccceeEEEE-EECCEEEEEEEEeCCCchhh-----------hH
Confidence 458999999999999999999997654221 1222222222222 24454 4559999996532 12
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCCCCchH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPECPKPL 169 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~~~~~l 169 (259)
.....+..+|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+.... ...+.+. ........
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHH
Confidence 233456788999999999855443332 34555555322 35999999999986541 1111111 10112233
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+....+.. .+|..++..+ .++.+|++.|.+.+.
T Consensus 295 ~~~~~~~~~~-~~~~~Sa~~~----~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 295 LAMAKEIGAV-KYLECSALTQ----RGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCc-EEEEecCCCC----cCHHHHHHHHHHHHh
Confidence 4455554431 2444444443 789999999877654
No 161
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6e-16 Score=133.11 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=85.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...+|+|+|.||||||||+|+|++..... ...+++|.++....+. ..+.++.++||||+.............+...+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~-~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIR-YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEE-ETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEE-eCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 34689999999999999999999987533 3456777777766655 68899999999999866444444555665555
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHH-HHHHHhccc-ccCeEEEEEeCCCCC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIH-SLESLFGKK-VFDYMIVVFTGGNEL 150 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~-~l~~~~~~~-~~~~~ivV~nk~D~~ 150 (259)
.. +|++++|+|+.+++. +...+. .|.. ++.. ..+|.++++||+|..
T Consensus 148 ~~----ad~il~vvD~~~p~~--~~~~i~~EL~~-~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 RT----CNLLFIILDVNKPLH--HKQIIEKELEG-VGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HH----CSEEEEEEETTSHHH--HHHHHHHHHHH-TTEEETCCCCCEEEEECSSS
T ss_pred Hh----cCccccccccCccHH--HHHHHHHHHHH-hhHhhccCChhhhhhHhhhh
Confidence 54 499999999974432 223333 3333 3332 335889999999974
No 162
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.46 E-value=1.1e-17 Score=132.79 Aligned_cols=119 Identities=17% Similarity=0.023 Sum_probs=73.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
....+|+++|.+|||||||+|++++....... .+++.......+.. .....+.+|||||.... ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR 93 (204)
Confidence 35689999999999999999999976642211 11111111111111 12235679999996432 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.....+..+|++|+|+|++++.+..+ ..++..+..... ..|+++|+||+|+...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 149 (204)
Confidence 22334567799999999985543333 245555544322 3499999999998754
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.64 E-value=1.4e-17 Score=148.30 Aligned_cols=161 Identities=12% Similarity=0.171 Sum_probs=103.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|+++|++++|||||+++|++..... ....+.|.....+.+. .++..+.||||||..+... ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~-----------~~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVE-TENGMITFLDTPGHAAFTS-----------MR 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTT-----------SB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHH-----------HH
Confidence 45789999999999999999998755322 1224455554444443 4567899999999765422 12
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE 177 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (259)
......+|++|+|+|++++..++..+.+..+.. .+ .|+++|+||+|+...+...+...+... . .+.+.++
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~----vPiIVviNKiDl~~~~~~~v~~~l~~~-~----~~~~~~~ 138 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQ----VPVVVAVNKIDKPEADPDRVKNELSQY-G----ILPEEWG 138 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TT----CCEEEEEECSSSSTTCCCCTTCCCCCC-C----CCTTCCS
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cC----ceEEEEEEeccccccCHHHHHHHHHHh-h----hhHHHhC
Confidence 344567899999999987777777777766554 33 399999999998754222222222110 0 0111223
Q ss_pred CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 178 NRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
..+.++..++..+ .++.+|++.|..
T Consensus 139 ~~~~~v~vSAktG----~gI~eLle~I~~ 163 (501)
T 1zo1_I 139 GESQFVHVSAKAG----TGIDELLDAILL 163 (501)
T ss_dssp SSCEEEECCTTTC----TTCTTHHHHTTT
T ss_pred CCccEEEEeeeec----cCcchhhhhhhh
Confidence 2344566665554 789999988753
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=132.71 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=83.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-----CCcceeeEEEEEEe-eCCc--EEEEEeCCCCCCCCCCh----
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-----SGVTKTCEMQRTML-KDGQ--VVNVIDTPGLFDSSADS---- 86 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~T~~~~~~~~~~-~~~~--~~~liDTPG~~~~~~~~---- 86 (259)
.++|+|+|++|+|||||+|+|++...+..+..+ ...|.......... ..+. .+.+|||||+.+.....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 478999999999999999999987665433211 11233222222211 2233 68999999996543211
Q ss_pred ---HHHHHHHHHHHhhc---------CCCccEEEEEEeC-CCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985 87 ---EFVSKEIVKCIGMA---------KDGIHAVLLVFSV-RNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN 153 (259)
Q Consensus 87 ---~~~~~~~~~~~~~~---------~~~~~~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~ 153 (259)
..+...+..++... ...+|+++|+++. ...+...+..+++.+ .. ..|+++|+||+|+...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCCH-
Confidence 11222222333211 2345788898886 457777776555544 22 2499999999998865
Q ss_pred cccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 154 DETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
..+..+.. .+...+..++..++.+++.... . ...+.++...|.+.+
T Consensus 190 -~ev~~~k~-----~i~~~~~~~~i~~~~~Sa~~~~--~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 -KERERLKK-----RILDEIEEHNIKIYHLPDAESD--E-DEDFKEQTRLLKASI 235 (361)
T ss_dssp -HHHHHHHH-----HHHHHTTCC-CCSCCCC------------CHHHHHHHHHTC
T ss_pred -HHHHHHHH-----HHHHHHHHCCCCEEeCCCcCCC--c-chhHHHHHHHHHhcC
Confidence 33332211 2334444444444444433221 1 244556666665544
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.64 E-value=1.1e-15 Score=139.25 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-----------------eCCcEEEEEeCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-----------------KDGQVVNVIDTPGLF 80 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-----------------~~~~~~~liDTPG~~ 80 (259)
..++|+++|.+|+|||||+|+|++..... ..+.+.|.........+ .....+.||||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 35799999999999999999999765421 11223343322222111 011259999999986
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE 151 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~ 151 (259)
+... .....+..+|++|+|+|+++++..+....+..+.. .+ .|+++|+||+|+..
T Consensus 82 ~F~~-----------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-~~----vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRM-YR----TPFVVAANKIDRIH 136 (594)
T ss_dssp CCTT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGST
T ss_pred HHHH-----------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC----CeEEEEeccccccc
Confidence 5432 12234567899999999998888888888877665 33 39999999999874
No 166
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=2.4e-16 Score=142.63 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=81.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEE-------------------------------
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTM------------------------------- 64 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~------------------------------- 64 (259)
....++|+|+|.+|+|||||+|+|+|........+..+.|.........
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3467899999999999999999999988632112223333221110000
Q ss_pred -----eeCC---cEEEEEeCCCCCCCCCChHHHHHH--HHHHHhhcCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhc
Q 024985 65 -----LKDG---QVVNVIDTPGLFDSSADSEFVSKE--IVKCIGMAKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFG 133 (259)
Q Consensus 65 -----~~~~---~~~~liDTPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~ 133 (259)
...+ ..+.||||||+.+..... +... +..........+|++|+|+|++. .+...+..+++.+... +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-C
Confidence 0000 368999999987532111 1000 12222223345699999999985 4667777776666431 2
Q ss_pred ccccCeEEEEEeCCCCCCCCcccHHh
Q 024985 134 KKVFDYMIVVFTGGNELEDNDETLED 159 (259)
Q Consensus 134 ~~~~~~~ivV~nk~D~~~~~~~~~~~ 159 (259)
.|+++|+||+|+... ..+..
T Consensus 219 ----~pvilVlNK~Dl~~~--~el~~ 238 (550)
T 2qpt_A 219 ----DKIRVVLNKADMVET--QQLMR 238 (550)
T ss_dssp ----GGEEEEEECGGGSCH--HHHHH
T ss_pred ----CCEEEEEECCCccCH--HHHHH
Confidence 389999999999865 44443
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.62 E-value=2.3e-15 Score=118.90 Aligned_cols=162 Identities=14% Similarity=0.112 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+++|++|||||||+|.|++....... .+..+.......+. .++. .+.+|||||.......
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~---------- 70 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRI---------- 70 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCchhhhhh----------
Confidence 3579999999999999999999987642211 11122222222233 3453 6778999995432110
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.......++++++|+|++...+... ..++..+.... ....|+++|+||+|+....... ....+.+..
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~---------~~~a~~l~~ 138 (199)
T 2f9l_A 71 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVP---------TDEARAFAE 138 (199)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSC---------HHHHHHHHH
T ss_pred -hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCcC---------HHHHHHHHH
Confidence 1112345699999999984433322 23344343321 1235999999999986421011 112445555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+ +.+++.++.++ .++.++++.+.+.+.+
T Consensus 139 ~~~--~~~~d~Sal~~----~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 139 KNN--LSFIETSALDS----TNVEEAFKNILTEIYR 168 (199)
T ss_dssp HTT--CEEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred HcC--CeEEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence 544 34555665554 7899999888776644
No 168
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.61 E-value=2.1e-15 Score=137.31 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee--C--CcEEEEEeCCCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK--D--GQVVNVIDTPGLF 80 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~--~--~~~~~liDTPG~~ 80 (259)
..++|+++|.+|+|||||+++|+........ ....+.|.......+.+. + +..+.||||||..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4579999999999999999999753210000 001234444333333332 2 2578999999975
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~ 160 (259)
+. ...+...+. .+|++|+|+|++++.+.++...+..... .+ .|+++|+||+|+.... .++
T Consensus 83 dF-------~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~-~~----ipiIvViNKiDl~~a~---~~~- 142 (599)
T 3cb4_D 83 DF-------SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAME-MD----LEVVPVLNKIDLPAAD---PER- 142 (599)
T ss_dssp GG-------HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHH-TT----CEEEEEEECTTSTTCC---HHH-
T ss_pred HH-------HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHH-CC----CCEEEeeeccCccccc---HHH-
Confidence 42 223333333 4599999999998888777666655443 23 3999999999987541 111
Q ss_pred hCCCCCchHHHHHHHcCC---cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 161 LGPECPKPLKEILQLCEN---RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...++.+.++. .++..++. . ..|+.+|++.|.+.++..
T Consensus 143 -------v~~ei~~~lg~~~~~vi~vSAk--t----g~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 143 -------VAEEIEDIVGIDATDAVRCSAK--T----GVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp -------HHHHHHHHTCCCCTTCEEECTT--T----CTTHHHHHHHHHHHSCCC
T ss_pred -------HHHHHHHHhCCCcceEEEeecc--c----CCCchhHHHHHhhcCCCc
Confidence 12233333332 23333333 2 278999999998887654
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.60 E-value=1.1e-14 Score=139.10 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=104.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCc------cc--------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRA------FK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~------~~--------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~ 82 (259)
.+..+|+++|.+++|||||+++|++... +. ......+.|.......+. ..+..+.||||||..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHe-- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHA-- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChH--
Confidence 4568999999999999999999986410 00 000123444443333333 356799999999942
Q ss_pred CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhhh
Q 024985 83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDYL 161 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~~ 161 (259)
.+...+...+..+|++|+|+|++++...++.+.+..+.. .+. | ++||+||+|+..+ ....+.+
T Consensus 371 ---------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgI----P~IIVVINKiDLv~d--~e~le~i 434 (1289)
T 3avx_A 371 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGV----PYIIVFLNKCDMVDD--EELLELV 434 (1289)
T ss_dssp ---------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTC----SCEEEEEECCTTCCC--HHHHHHH
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCC----CeEEEEEeecccccc--hhhHHHH
Confidence 344555567788999999999997877787777766654 343 6 7899999998753 2221111
Q ss_pred CCCCCchHHHHHHHcCC---cEEEEeCCCcccc----cchhHHHHHHHHHHHHHH
Q 024985 162 GPECPKPLKEILQLCEN---RRVLFDNKTKDAA----TRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 162 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~----~~~~~i~eLl~~i~~~~~ 209 (259)
...++.++...+. .+.++..++..+. ....++.+|++.|...++
T Consensus 435 ----~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 435 ----EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp ----HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ----HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 1134555655542 2233444433220 112578888888877654
No 170
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.60 E-value=2.9e-15 Score=136.16 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=95.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee--CC--cEEEEEeCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK--DG--QVVNVIDTPGL 79 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~--~~--~~~~liDTPG~ 79 (259)
...++|+++|.+|+|||||+++|+........ ....+.|.......+.+. ++ ..+.||||||.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34679999999999999999999753210000 001233433322223222 22 47889999997
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~ 159 (259)
.+. ...+...+ ..+|++|+|+|++++.+.++...+..... .+ .|+++|+||+|+.... .+.
T Consensus 84 ~dF-------~~ev~r~l----~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~~----ipiIvviNKiDl~~a~---~~~ 144 (600)
T 2ywe_A 84 VDF-------SYEVSRAL----AACEGALLLIDASQGIEAQTVANFWKAVE-QD----LVIIPVINKIDLPSAD---VDR 144 (600)
T ss_dssp GGG-------HHHHHHHH----HTCSEEEEEEETTTBCCHHHHHHHHHHHH-TT----CEEEEEEECTTSTTCC---HHH
T ss_pred HhH-------HHHHHHHH----HhCCEEEEEEECCCCccHHHHHHHHHHHH-CC----CCEEEEEeccCccccC---HHH
Confidence 642 22333333 45699999999998888887666655543 23 3999999999987541 111
Q ss_pred hhCCCCCchHHHHHHHcCCcE-EEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 160 YLGPECPKPLKEILQLCENRR-VLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
...++.+.++... .++..++.. ..|+.+|++.|.+.++..
T Consensus 145 --------v~~el~~~lg~~~~~vi~vSAkt----g~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 145 --------VKKQIEEVLGLDPEEAILASAKE----GIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp --------HHHHHHHTSCCCGGGCEECBTTT----TBSHHHHHHHHHHHSCCC
T ss_pred --------HHHHHHHhhCCCcccEEEEEeec----CCCchHHHHHHHHhcccc
Confidence 1223333333210 022233322 278999999998887654
No 171
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.60 E-value=3e-15 Score=132.13 Aligned_cols=119 Identities=24% Similarity=0.303 Sum_probs=75.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC-cccc----------------------------cCCCCCcceeeEEEEEEeeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRR-AFKS----------------------------KAGSSGVTKTCEMQRTMLKD 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~-~~~~----------------------------~~~~~~~T~~~~~~~~~~~~ 67 (259)
.+.++|+++|.+|+|||||+|+|++.. .+.. .....+.|.......+. ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TK 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cC
Confidence 456899999999999999999998541 1100 00023455555544444 45
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeE
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYM 140 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (259)
+..+.||||||..+ +...+...+..+|++|+|+|++++ ...+..+.+..+.. ++. .++
T Consensus 83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTC
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 67899999999653 233344567789999999999865 33344454544443 332 368
Q ss_pred EEEEeCCCCCC
Q 024985 141 IVVFTGGNELE 151 (259)
Q Consensus 141 ivV~nk~D~~~ 151 (259)
++|+||+|+.+
T Consensus 148 ivviNK~Dl~~ 158 (435)
T 1jny_A 148 IVAVNKMDLTE 158 (435)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEEcccCCC
Confidence 99999999876
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.59 E-value=7.7e-16 Score=136.71 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC-cccc-------------cC---------------CCCCcceeeEEEEEEeeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRR-AFKS-------------KA---------------GSSGVTKTCEMQRTMLKD 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~-~~~~-------------~~---------------~~~~~T~~~~~~~~~~~~ 67 (259)
...++|+++|.+|+|||||+|+|++.. .+.. +. ...+.|.......+. ..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~ 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TP 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cC
Confidence 356899999999999999999998641 0000 00 013455555544444 45
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-------hHHHHHHHHHHHhcccccCeE
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSE-------EGGAAIHSLESLFGKKVFDYM 140 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~ 140 (259)
+..+.||||||.. .+...+...+..+|++|+|+|++++..+ ++.+.+..+.. .+. .++
T Consensus 84 ~~~~~iiDtPGh~-----------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~i 148 (458)
T 1f60_A 84 KYQVTVIDAPGHR-----------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQL 148 (458)
T ss_dssp SEEEEEEECCCCT-----------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEE
T ss_pred CceEEEEECCCcH-----------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeE
Confidence 6789999999954 2334445567789999999999854322 44444443333 332 259
Q ss_pred EEEEeCCCCCC
Q 024985 141 IVVFTGGNELE 151 (259)
Q Consensus 141 ivV~nk~D~~~ 151 (259)
++|+||+|+..
T Consensus 149 ivviNK~Dl~~ 159 (458)
T 1f60_A 149 IVAVNKMDSVK 159 (458)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEEcccccc
Confidence 99999999874
No 173
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.59 E-value=1.4e-14 Score=113.78 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 95 (259)
...+|+|+|++|||||||+|.|++....... .+..+.......+. .++. .+.+|||||......-
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~---------- 94 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRAI---------- 94 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhhh----------
Confidence 3579999999999999999999987653221 12222222223333 4554 4567999997643221
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985 96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ 174 (259)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (259)
.......++++++|+|.....+... ..++..+.... ....|+++|+||+|+....... ....+.+..
T Consensus 95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~---------~~~a~~l~~ 162 (191)
T 1oix_A 95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVP---------TDEARAFAE 162 (191)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccC---------HHHHHHHHH
Confidence 1112345689999999874332222 12333333321 1235899999999976421011 113445555
Q ss_pred HcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985 175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSV 207 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~ 207 (259)
..+ +.+++.++.++ .++.++++.+.+.
T Consensus 163 ~~~--~~~ld~Sald~----~~v~~l~~~l~~~ 189 (191)
T 1oix_A 163 KNG--LSFIETSALDS----TNVEAAFQTILTE 189 (191)
T ss_dssp HTT--CEEEECCTTTC----TTHHHHHHHHHHH
T ss_pred HcC--CEEEEEeCCCC----CCHHHHHHHHHHH
Confidence 544 34556665554 7899998887654
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.57 E-value=2.1e-14 Score=130.07 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=92.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE----EEEe---eCCcEEEEEeCCCCCCCCCChHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ----RTML---KDGQVVNVIDTPGLFDSSADSEFV 89 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~----~~~~---~~~~~~~liDTPG~~~~~~~~~~~ 89 (259)
....+|+|+|.+|||||||+|++++.........+.+.+...... .+.. ..+..+.+|||||.........
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~-- 116 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ-- 116 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence 456899999999999999999999877422111111111111100 0111 1246899999999654322111
Q ss_pred HHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985 90 SKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL 169 (259)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l 169 (259)
. ....+|++|+|+|+++ . .....++..+..... ..|+++|+||+|+........ ..+
T Consensus 117 --~-------~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~---------~~~ 173 (535)
T 3dpu_A 117 --F-------FMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQ---------KKI 173 (535)
T ss_dssp --H-------HHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCH---------HHH
T ss_pred --H-------HccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCH---------HHH
Confidence 1 1224699999999973 3 333556666666432 359999999999875421111 123
Q ss_pred HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985 170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN 211 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~ 211 (259)
+......+..+ |..++..+ .|+.+|+..+.+.+.+.
T Consensus 174 ~~~~~~~~~~~--~~vSA~~g----~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 174 NERFPAIENRF--HRISCKNG----DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp HHHCGGGTTCE--EECCC---------CTTHHHHHHHHHTCT
T ss_pred HHHHHhcCCce--EEEecCcc----cCHHHHHHHHHHHHhcc
Confidence 34444444443 44444333 78999999999888654
No 175
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=1.5e-14 Score=125.85 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--------------------eC---CcEEEEEeC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--------------------KD---GQVVNVIDT 76 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~~~liDT 76 (259)
.+|+++|.+|||||||+|+|++... .. ...+++|.......... .+ ..++.||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3799999999999999999999873 11 12334444333322110 12 247999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR 116 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~ 116 (259)
||+........ .+..........+|++++|+|++.+
T Consensus 79 pG~~~~a~~~~----~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhh----hHHHHHHHHHhcCCEEEEEEecccc
Confidence 99864321111 1222223456789999999999743
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.56 E-value=4.8e-14 Score=130.89 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=79.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccc-------ccC---------CCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK-------SKA---------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~-------~~~---------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~ 79 (259)
....++|+++|.+|+|||||+|+|+...... .+. ...+.|.......+. ..+..++||||||.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~ 87 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGH 87 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCc
Confidence 3457899999999999999999998321000 000 012344444444343 46789999999998
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.+. .......+. .+|++|+|+|++.+.+..+...+..+.. .+ .|+++|+||+|+...
T Consensus 88 ~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~-~~----~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 88 VDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEK-YK----VPRIAFANKMDKTGA 144 (691)
T ss_dssp TTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCEEEEEECTTSTTC
T ss_pred cch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHH-cC----CCEEEEEECCCcccC
Confidence 653 223333333 4599999999998888888777776654 33 399999999998754
No 177
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.56 E-value=2.6e-14 Score=120.35 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA 100 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 100 (259)
+|+++|.+|||||||++.+.+..... .....+.|.......+ .....+.+|||||......+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 58999999999999999887654322 1112233333333222 233689999999976542110 0 01234
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH----HhhhCCCCCchHHHHHHHc
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL----EDYLGPECPKPLKEILQLC 176 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 176 (259)
+++++++|+|+|+++++...-..+.+++..........|+++|+||+|+..+ +.. ++... ...+++.+..
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~--~~R~~~~R~V~~----~~~~~la~~~ 143 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE--DFKVDAQRDIMQ----RTGEELLELG 143 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS--HHHHHHHHHHHH----HHHHTTSSSS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch--hhhhhHHHHhhH----HHHHHHHhhc
Confidence 5788999999999866333222332333332111123499999999998765 221 11110 0111111110
Q ss_pred --CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985 177 --ENRRVLFDNKTKDAATRTEQVGKLISLVNS 206 (259)
Q Consensus 177 --~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~ 206 (259)
+....+|.+++.+ .++.+.+..|..
T Consensus 144 ~~~~~i~f~eTSAkd-----~nV~eAFs~iv~ 170 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-----HSIYEAFSRIVQ 170 (331)
T ss_dssp CSCCCEEEECCCSSS-----SHHHHHHHHHHT
T ss_pred ccccCceEEEeccCC-----CcHHHHHHHHHH
Confidence 1356678888764 467777776544
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.56 E-value=2.2e-16 Score=144.07 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEee
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTMLK 66 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~ 66 (259)
....++|+++|.+|+|||||+|+|++....... ....+.|.......+. .
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-S 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-e
Confidence 345679999999999999999999643210000 0023455555555444 4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHhHHHHHHHHHHHhcccccCe
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-----F--SEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
.+..+.||||||..+.. ..+...+..+|++|+|+|++.+ + ..+..+.+..+.. ++. .+
T Consensus 253 ~~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SE 317 (592)
T ss_dssp ------CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CC
T ss_pred CCeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---Ce
Confidence 56789999999976421 1122344577999999999853 3 5666666666554 443 24
Q ss_pred EEEEEeCCCCCCC
Q 024985 140 MIVVFTGGNELED 152 (259)
Q Consensus 140 ~ivV~nk~D~~~~ 152 (259)
++||+||+|+...
T Consensus 318 iIvviNKiDl~~~ 330 (592)
T 3mca_A 318 IVVSVNKLDLMSW 330 (592)
T ss_dssp EEEEEECGGGGTT
T ss_pred EEEEEeccccccc
Confidence 8999999998753
No 179
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=124.42 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=82.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC----CCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCCh---H
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS----SGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADS---E 87 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~---~ 87 (259)
-.++|+|+|++|||||||+|.|+|...+..+... ...|.......+.. ..+ ..+.+|||||+....... .
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4578999999999999999999998753332110 01122222111111 112 268999999987542111 1
Q ss_pred HHHH----HHHHHH-------hhcC--CCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985 88 FVSK----EIVKCI-------GMAK--DGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN 153 (259)
Q Consensus 88 ~~~~----~~~~~~-------~~~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~ 153 (259)
.+.. .+...+ ...+ +.+|++||+++++ .++...+..+++.+.. ..|+|+|+||+|++..
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~~- 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP- 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSCH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCccH-
Confidence 1111 111111 1112 3456788888776 5788888767666642 2499999999999865
Q ss_pred cccHHhhhCCCCCchHHHHHHHcCCcEEEEeC
Q 024985 154 DETLEDYLGPECPKPLKEILQLCENRRVLFDN 185 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 185 (259)
..+..+.. .+...+...+..++.|+.
T Consensus 183 -~ev~~~k~-----~i~~~~~~~~i~~~~~sa 208 (418)
T 2qag_C 183 -EECQQFKK-----QIMKEIQEHKIKIYEFPE 208 (418)
T ss_dssp -HHHHHHHH-----HHHHHHHHHTCCCCCCC-
T ss_pred -HHHHHHHH-----HHHHHHHHcCCeEEeCCC
Confidence 44443322 344555555555555543
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.55 E-value=2.5e-14 Score=124.84 Aligned_cols=169 Identities=12% Similarity=0.105 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 99 (259)
..|+|+|++|||||||+|+|++...... ..+.+|..+....+.......+.++||||+.........+...+...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--- 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH--- 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH---
Confidence 4589999999999999999998864222 22333444444434322237899999999865311110011122222
Q ss_pred cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN 178 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (259)
...++.+|+|+|++ +-...+ ..+.+.+..+...-..+|.++|+||+|.... ..++ .+...+...+.
T Consensus 233 -~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~---------~l~~~l~~~g~ 299 (416)
T 1udx_A 233 -IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVK---------ALADALAREGL 299 (416)
T ss_dssp -HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHH---------HHHHHHHTTTS
T ss_pred -HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHH---------HHHHHHHhcCC
Confidence 23569999999996 222222 1222233221100123499999999997632 1111 22233333333
Q ss_pred cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
.++..++ ... .++.+|++.|.+.+.+..
T Consensus 300 ~vi~iSA--~~g----~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 300 AVLPVSA--LTG----AGLPALKEALHALVRSTP 327 (416)
T ss_dssp CEEECCT--TTC----TTHHHHHHHHHHHHHTSC
T ss_pred eEEEEEC--CCc----cCHHHHHHHHHHHHHhcc
Confidence 4333333 332 789999999999987654
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.54 E-value=2.5e-14 Score=128.82 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=77.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------------CCCCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------------AGSSGVTKTCEMQRTMLKDGQVVNVIDT 76 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------------~~~~~~T~~~~~~~~~~~~~~~~~liDT 76 (259)
...++|+++|.+|+|||||+|+|++....... ....+.|.......+. ..+..+.||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP-YHDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-ETTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-ECCeEEEEEEC
Confidence 34689999999999999999999853211000 0012223222233333 46789999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
||..+.. ... ..++..+|++|+|+|++.+.......++..+.. .+ .|+++|+||+|+...
T Consensus 90 PG~~df~-------~~~----~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-~~----ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFS-------EDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-RD----TPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCC-------HHH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-TT----CCEEEEEECTTSCCS
T ss_pred CCChhHH-------HHH----HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-cC----CCEEEEEcCcCCccc
Confidence 9986542 122 223456799999999987777776666665543 23 399999999998754
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.53 E-value=6.6e-14 Score=129.98 Aligned_cols=119 Identities=20% Similarity=0.294 Sum_probs=79.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc--c-CC-------------CCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS--K-AG-------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--~-~~-------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
...++|+++|.+|+|||||+|+|++...... + .. ..+.|.......+. ..+..++||||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCc
Confidence 4568999999999999999999984211000 0 00 12334333333333 467899999999987
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
+... .+...+. .+|++|+|+|++.+.+..+...+..+.. .+ .|+++|+||+|+...
T Consensus 87 df~~-------~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~-~~----~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTV-------EVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATT-YG----VPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCH-------HHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHH-TT----CCEEEEEECTTSTTC
T ss_pred chHH-------HHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHH-cC----CCEEEEEECCCcccc
Confidence 6421 2333333 3599999999998888888777777655 33 399999999998754
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.53 E-value=1.8e-14 Score=128.15 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=68.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCc-cc------------------------cc----CCCCCcceeeEEEEEEeeC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRA-FK------------------------SK----AGSSGVTKTCEMQRTMLKD 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~-~~------------------------~~----~~~~~~T~~~~~~~~~~~~ 67 (259)
...++|+++|.+++|||||+++|+.... +. .. ....+.|.......+. .+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cC
Confidence 4458999999999999999999974210 00 00 0013445555444343 46
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHhHHHHHHHHHHHhcccccCe-
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-------SEEGGAAIHSLESLFGKKVFDY- 139 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~- 139 (259)
+..+.||||||..+ +...+...+..+|++|+|+|++++. ..+..+.+..+.. .+. |
T Consensus 120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v----p~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI----NH 183 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC----SS
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC----CE
Confidence 78999999999643 2333344567889999999998653 1344444544433 342 5
Q ss_pred EEEEEeCCCCCC
Q 024985 140 MIVVFTGGNELE 151 (259)
Q Consensus 140 ~ivV~nk~D~~~ 151 (259)
++||+||+|+..
T Consensus 184 iivviNK~Dl~~ 195 (467)
T 1r5b_A 184 LVVVINKMDEPS 195 (467)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECccCCC
Confidence 999999999864
No 184
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.51 E-value=1.6e-13 Score=124.05 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=85.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc----------------cc----CCCCCcceeeEEEEEEeeCCcEEEEEeCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFK----------------SK----AGSSGVTKTCEMQRTMLKDGQVVNVIDTP 77 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~----------------~~----~~~~~~T~~~~~~~~~~~~~~~~~liDTP 77 (259)
..++|+|+|..++|||||..+|+-..... .+ ....+.|.......+. +++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence 46899999999999999999986211000 00 1112444444444455 578899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 78 GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
|..|+.. ++.+.+..+ |++|+|+|+..+...+...+++...+ .+. |.++++||+|....
T Consensus 109 GHvDF~~-------Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~-~~l----p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSE-------DTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRM-RAT----PVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSH-------HHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHH-TTC----CEEEEEECTTSCCC
T ss_pred CcHHHHH-------HHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHH-hCC----ceEEEEecccchhc
Confidence 9887643 566665555 99999999999999999999988776 443 99999999998765
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.50 E-value=1.8e-13 Score=126.65 Aligned_cols=117 Identities=25% Similarity=0.267 Sum_probs=79.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC----------------CCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG----------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~----------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~ 80 (259)
....+|+++|++|+|||||+++|++......... ..+.|.......+. ..+..++||||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCcc
Confidence 3567999999999999999999984332100000 01233333333333 456789999999975
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL 150 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~ 150 (259)
+. ...+...+. .+|++++|+|++.++......++..+.. .+ .|+++|+||+|+.
T Consensus 86 ~f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~-~~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DF-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAER-LG----LPRMVVVTKLDKG 139 (665)
T ss_dssp GG-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCEEEEEECGGGC
T ss_pred ch-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHH-cc----CCEEEEecCCchh
Confidence 42 223333333 4599999999988888888877777765 33 3999999999987
No 186
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.50 E-value=1.9e-13 Score=117.59 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
.+..++||||||+..+ .... ...+|++|+|+|+........ +. .... ..|+++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~----------~~~~----~~~aD~vl~V~d~~~~~~~~~---l~--~~~~----~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS----------EVAV----ANMVDTFVLLTLARTGDQLQG---IK--KGVL----ELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH----------HHHH----HTTCSEEEEEEESSTTCTTTT---CC--TTSG----GGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH----------HHHH----HHhCCEEEEEECCCCCccHHH---HH--HhHh----hcCCEEEEEC
Confidence 4568999999997641 1111 256799999999863221111 11 1111 2399999999
Q ss_pred CCCCCCCcccHHhhhCCCCCchHHHHHHHcC-----CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 147 GNELEDNDETLEDYLGPECPKPLKEILQLCE-----NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+|+... ........ .+...+.... +...++..++.. ..|+.+|++.|.+.+..
T Consensus 227 ~Dl~~~--~~~~~~~~-----~l~~~l~~~~~~~~~~~~~vi~iSA~~----g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAAR-----ELSAAIRLIYPREALWRPPVLTMSAVE----GRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHH-----HHHHHHHHHSTTCCSCCCCEEEEBGGG----TBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHH-----HHHHHHhhccccccCCCCceEEEEcCC----CCCHHHHHHHHHHHHHH
Confidence 998643 22221111 2223332221 111233333333 37999999999998876
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.50 E-value=3.3e-13 Score=125.44 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=79.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCc-ccc------c-----C----CCCCcceeeEEEEEEeeCC-------cEEEE
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRA-FKS------K-----A----GSSGVTKTCEMQRTMLKDG-------QVVNV 73 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~-~~~------~-----~----~~~~~T~~~~~~~~~~~~~-------~~~~l 73 (259)
...++|+++|..|+|||||+++|+.... +.. + . ...+.|.......+. ..+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEEE
Confidence 4568999999999999999999974321 000 0 0 012334444433333 233 78999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 74 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
|||||..+. ...+.. +...+|++|+|+|++.+........+..+.. .+ .|+++|+||+|+...
T Consensus 87 iDTPG~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-~~----ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANK-YK----VPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccch-------HHHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH-cC----CCEEEEEeCCCcccc
Confidence 999997642 122333 3345699999999997877777666665543 23 399999999998754
No 188
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=117.94 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=50.7
Q ss_pred CccEEEEEEeCCCC--CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 103 GIHAVLLVFSVRNR--FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 103 ~~~~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
++|++|+|+|++++ .+... ..++..+..... ....|+++|+||+|+... ..++ ....+..... .
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~--~~v~---------~~~~~~~~~~-~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVE--RYIR---------DAHTFALSKK-N 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCH--HHHH---------HHHHHHHTSS-S
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEccccccc--HHHH---------HHHHHHHhcC-C
Confidence 58999999999854 44433 344444443211 123499999999998643 1121 2233333221 1
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVI 208 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~ 208 (259)
+.++..++..+ .++.++++.|.+.+
T Consensus 229 ~~~~e~SAk~g----~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVVETSARSN----VNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEEECBTTTT----BSHHHHHHHHHHHH
T ss_pred CeEEEEECCCC----CCHHHHHHHHHHHh
Confidence 22444444433 78999999887765
No 189
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=119.41 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCC--CCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHH-------
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAG--SSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEF------- 88 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~------- 88 (259)
++++|+|++|+|||||+|.|+|......... .++.+.....+... ..+ ..+.++|+||++... ....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q-~~~l~~~ltv~D~~~~g~~~-~~~~~~~~i~~ 120 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQ-ESNVRLKLTIVSTVGFGDQI-NKEDSYKPIVE 120 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEE-C--CEEEEEEEEEECCCC-C-CHHHHSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEee-cCccccccchhhhhhhhhcc-ccchhhhHHHH
Confidence 4599999999999999999999864221111 12222221111111 112 268999999998642 2211
Q ss_pred -HHHHHHHHHhhc---------CCC--ccE-EEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcc
Q 024985 89 -VSKEIVKCIGMA---------KDG--IHA-VLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDE 155 (259)
Q Consensus 89 -~~~~~~~~~~~~---------~~~--~~~-il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~ 155 (259)
+...+...+... ... +|+ ++|++|+..+++..|..+++.|. . ..|+|+|+||+|.+.+ .
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~--~----~~~vI~Vi~KtD~Lt~--~ 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD--S----KVNIIPIIAKADAISK--S 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC--S----CSEEEEEESCGGGSCH--H
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh--h----CCCEEEEEcchhccch--H
Confidence 122222222211 122 344 66677877789999977777764 1 2499999999999876 4
Q ss_pred cHHh
Q 024985 156 TLED 159 (259)
Q Consensus 156 ~~~~ 159 (259)
++..
T Consensus 193 E~~~ 196 (427)
T 2qag_B 193 ELTK 196 (427)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.46 E-value=3.9e-13 Score=115.22 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=56.6
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
.+..+.||||||+... . ..+ ...+|++++|+|++.+... ..+. ...+. .|.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~----~~l-------~~~~d~vl~V~d~~~~~~~---~~i~--~~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---E----FAV-------ADMVDMFVLLLPPAGGDEL---QGIK--RGIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---H----HHH-------HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh---h----hhH-------HhhCCEEEEEEcCCcchhH---HHhH--HHHHh----cCCEEEEee
Confidence 5668999999998642 1 111 2367999999998743211 1111 11222 388999999
Q ss_pred CCCCCCCcccHHhhhCCCCCchHHHHHHHc-----CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 147 GNELEDNDETLEDYLGPECPKPLKEILQLC-----ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
+|+.+. ........ .+...+... .+.+.++..++.++ .|+.+|++.|.+.+..
T Consensus 222 ~Dl~~~--~~~~~~~~-----~l~~~l~~~~~~a~~~~~~vi~iSA~~g----~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQA-----EYVSALKLLRKRSQVWKPKVIRISARSG----EGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHH-----HHHHHHTTCC-----CCCEEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHH-----HHHHHHHhcCccccCCCceEEEEecCCC----CCHHHHHHHHHHHHHH
Confidence 998642 11110000 111111110 11222344444443 7999999999888764
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.45 E-value=1.4e-12 Score=111.43 Aligned_cols=109 Identities=10% Similarity=0.089 Sum_probs=59.0
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
.+..++||||||+.+. . ..+ ...+|++|+|+|++.... ...+.. ...+ .|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~----~---~~~-------~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~~----~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQS----E---TEV-------ARMVDCFISLQIAGGGDD---LQGIKK--GLME----VADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTH----H---HHH-------HTTCSEEEEEECC---------CCCCH--HHHH----HCSEEEECC
T ss_pred cCCCEEEEeCCCccch----H---HHH-------HHhCCEEEEEEeCCccHH---HHHHHH--hhhc----ccCEEEEEC
Confidence 3568999999998642 1 111 257799999999863211 001110 1112 288999999
Q ss_pred CCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-----cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 147 GNELEDNDETLEDYLGPECPKPLKEILQLCEN-----RRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
+|+... ......+. .++..+...+. ...++..++..+ .|+.+|++.|.+.+.
T Consensus 204 ~Dl~~~--~~~~~~~~-----~l~~~l~~~~~~~~~~~~~vi~iSA~~g----~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARH-----MYESALHILRRKYDEWQPRVLTCSALEK----RGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHH-----HHHHHHHHSCCSBTTBCCEEEECBGGGT----BSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHH-----HHHHHHHhccccccCCCCcEEEeeCCCC----CCHHHHHHHHHHHHH
Confidence 998743 22221111 12222222221 223444444333 789999999988765
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.42 E-value=1.3e-12 Score=109.69 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-----CCcceeeEEEEEEe-eC--CcEEEEEeCCCCCCCCCChH--
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-----SGVTKTCEMQRTML-KD--GQVVNVIDTPGLFDSSADSE-- 87 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~T~~~~~~~~~~-~~--~~~~~liDTPG~~~~~~~~~-- 87 (259)
-.++|+|+|++|||||||+|.|+|...++....+ ...|.......+.. .. ...+.+|||||+.......+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999999987433221100 01121111111111 11 24789999999853321000
Q ss_pred -HHHH----HHHHHHhhc---------CCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 88 -FVSK----EIVKCIGMA---------KDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 88 -~~~~----~~~~~~~~~---------~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.+.. .+...+... ...+++++|+++++. ++...+..+++.+ .. ..++++|+||+|+...
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l----~~--~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH----TT--TSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH----Hh--cCCEEEEEEeCCCCCH
Confidence 1111 111222111 124567778777653 4877765444333 22 2389999999998754
Q ss_pred CcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985 153 NDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE 210 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~ 210 (259)
..+..+. ..+...+...+..++.+ ++.. . ++.+++..+.+.+.+
T Consensus 171 --~e~~~~~-----~~~~~~~~~~~~~~~e~--Sa~~----~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 --KERERLK-----KRILDEIEEHNIKIYHL--PDAE----S-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp --HHHHHHH-----HHHHHHHHHTTCCCCCC--C--------------CHHHHHHHHT
T ss_pred --HHHHHHH-----HHHHHHHHHcCCeEEec--CCcc----c-cccHHHHHHHHHhhc
Confidence 2332111 13445555555443333 3322 2 577777766665543
No 193
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.40 E-value=6.6e-13 Score=109.79 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-----CCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCCh---HH
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-----SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADS---EF 88 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~---~~ 88 (259)
++++|+|++|+|||||+|.|+|...+..+... .+.+.......+... .+ ..+.++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999987654332110 111111111111111 11 268999999997643211 11
Q ss_pred HH----HHHHHHHhh----------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985 89 VS----KEIVKCIGM----------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN 153 (259)
Q Consensus 89 ~~----~~~~~~~~~----------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~ 153 (259)
+. ..+...... ....+++.++++|.. .++.+.+..+++.+.+. .++++|+||+|.+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 11 112222211 123468889999865 78999998888877653 399999999999976
Q ss_pred cccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985 154 DETLEDYLGPECPKPLKEILQLCENRRV 181 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (259)
.++..+.. .++..+...+..++
T Consensus 156 -~e~~~~k~-----~i~~~l~~~~i~i~ 177 (270)
T 3sop_A 156 -EEKSEFKQ-----RVRKELEVNGIEFY 177 (270)
T ss_dssp -HHHHHHHH-----HHHHHHHHTTCCCS
T ss_pred -HHHHHHHH-----HHHHHHHHcCcccc
Confidence 55554433 34544555554443
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=5.7e-13 Score=113.98 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC-----------------cEEEEEeCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGLFDS 82 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~liDTPG~~~~ 82 (259)
.+|+++|.+|||||||+|+|++.... . ...+++|..+....+. .++ ..+.+|||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~-v-~~~p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE-A-ANYPFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 58999999999999999999987631 1 1223445444433333 222 47999999998753
Q ss_pred CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 024985 83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN 115 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~ 115 (259)
......+...+... ++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLAN----IRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence 21111122222222 346799999999873
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.36 E-value=5.4e-12 Score=117.65 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=83.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-------c---------CCCCCcceeeEEEEEEee------CCcEEEEE
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-------K---------AGSSGVTKTCEMQRTMLK------DGQVVNVI 74 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-------~---------~~~~~~T~~~~~~~~~~~------~~~~~~li 74 (259)
+..++|+++|..++|||||..+|+-...... + ....+.|.......+.|. ++..++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 4568999999999999999998862211000 0 011234444433333332 24689999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 75 DTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 75 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
||||.-|+ ..++...+..+ |++|+|+|+..+...++..+++...+ .+. |.++++||+|....
T Consensus 91 DTPGHvDF-------~~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~-~~l----p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDF-------TIEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANK-YGV----PRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTC-------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHH-HTC----CEEEEEECSSSTTC
T ss_pred eCCCCccc-------HHHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEccccccCc
Confidence 99998876 34666666666 99999999999999999999988766 343 99999999998754
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.35 E-value=2e-12 Score=122.37 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC--------------CCCCcceeeEEEEEEee---------------C
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKA--------------GSSGVTKTCEMQRTMLK---------------D 67 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------~ 67 (259)
...++|+++|++|+|||||+|+|++........ ...+.|.........+. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346799999999999999999998642111100 01122322222222221 1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..+.||||||..+... ..... ...+|++|+|+|++++.+.++...+..+.. .+ .|+++|+||+
T Consensus 97 ~~~i~liDTPG~~df~~-------~~~~~----l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~----~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS-------EVTAA----LRVTDGALVVVDTIEGVCVQTETVLRQALG-ER----IKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSCH-------HHHHH----HHTCSEEEEEEETTTBSCHHHHHHHHHHHH-TT----CEEEEEEECH
T ss_pred CceEEEEECcCchhhHH-------HHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCeEEEEECC
Confidence 46899999999876432 23333 345699999999998888888766665443 22 3999999999
Q ss_pred CCC
Q 024985 148 NEL 150 (259)
Q Consensus 148 D~~ 150 (259)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 986
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.34 E-value=8.4e-13 Score=121.57 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccccc---C----C---------CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK---A----G---------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~----~---------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~ 82 (259)
.++|+++|..++|||||..+|+-....... . . ..+.|.......+. +++..++||||||..|+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHH
Confidence 468999999999999999998621110000 0 0 01344444444444 56788999999998875
Q ss_pred CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
..++...+.. +|++|+|+|+..+...++..+++.+.+ .+. |.++++||+|....
T Consensus 81 -------~~Ev~raL~~----~DgavlVVDa~~GV~~qT~~v~~~a~~-~~l----p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 -------LAEVYRSLSV----LDGAILLISAKDGVQAQTRILFHALRK-MGI----PTIFFINKIDQNGI 134 (638)
T ss_dssp -------HHHHHHHHTT----CSEEECCEESSCTTCSHHHHHHHHHHH-HTC----SCEECCEECCSSSC
T ss_pred -------HHHHHHHHHH----hCEEEEEEeCCCCCcHHHHHHHHHHHH-cCC----CeEEEEeccccccC
Confidence 3355555544 499999999998999999989988877 443 88999999998765
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.31 E-value=3.9e-12 Score=109.35 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--------------------CCcEEEEEeCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--------------------DGQVVNVIDTPGL 79 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--------------------~~~~~~liDTPG~ 79 (259)
++|+++|.+|||||||+|+|++... .. ...+.+|..+........ .+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-LA-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-TC-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-cc-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999998642 11 112333433333222111 1347999999999
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN 115 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~ 115 (259)
.......+.+...+...+ +.+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence 865332222333343333 35699999999873
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.30 E-value=1.1e-13 Score=119.29 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=70.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc-----cccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF-----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~-----~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
..+|+++|.+|+|||||+|+|++.... ......+++|+....... +..+.++||||+.+.....+.+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL----DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES----SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe----cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 368999999999999999999986311 111233455655544321 22388999999987542222222222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
...+ .....++.++|+++....+.......++.+.. ...|+++|+||+|.+..
T Consensus 236 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-----~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 236 LKLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG-----GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEE
T ss_pred HHHh-ccccccCceEEEEcCCCEEEEcceEEEEEecC-----CCceEEEEecCcccccc
Confidence 2221 12356788999998842211111111222221 12399999999999865
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.30 E-value=7.1e-12 Score=102.92 Aligned_cols=182 Identities=13% Similarity=0.057 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh-----CCCcccccCCCCCcce----------eeEEEEE-------------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL-----GRRAFKSKAGSSGVTK----------TCEMQRT------------------- 63 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~-----~~~~~~~~~~~~~~T~----------~~~~~~~------------------- 63 (259)
....+++.|+.||||||+++.|. |..+......+..... .......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 45789999999999999999998 6654333322211000 0000000
Q ss_pred -----------EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHH-HHHHHHHH
Q 024985 64 -----------MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGA-AIHSLESL 131 (259)
Q Consensus 64 -----------~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~~ 131 (259)
....+..++||||||..+. .....+...+...... +++++|+|+.......+.. ........
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 0001237999999996421 0001111112223345 8999999986444444422 11111110
Q ss_pred hcccccCeEEEEEeCCCCCCCCc-ccHHhhhCCCCCchHHH-----------------HHHHcCCcEEEEeCCCcccccc
Q 024985 132 FGKKVFDYMIVVFTGGNELEDND-ETLEDYLGPECPKPLKE-----------------ILQLCENRRVLFDNKTKDAATR 193 (259)
Q Consensus 132 ~~~~~~~~~ivV~nk~D~~~~~~-~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 193 (259)
. .....|+++|+||+|+..... ..+++++.. ....... +++..+....++..++..+
T Consensus 167 ~-~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~--- 241 (262)
T 1yrb_A 167 D-LRLGATTIPALNKVDLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR--- 241 (262)
T ss_dssp H-HHHTSCEEEEECCGGGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC---
T ss_pred h-cccCCCeEEEEecccccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc---
Confidence 1 111249999999999875410 112222211 0000111 1233332212333344333
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 024985 194 TEQVGKLISLVNSVILEN 211 (259)
Q Consensus 194 ~~~i~eLl~~i~~~~~~~ 211 (259)
.++.+|++.|.+.+...
T Consensus 242 -~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 242 -EGFEDLETLAYEHYCTC 258 (262)
T ss_dssp -TTHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHhccc
Confidence 79999999999888754
No 201
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.28 E-value=1.1e-13 Score=119.39 Aligned_cols=123 Identities=19% Similarity=0.181 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC-----CcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR-----RAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~-----~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 93 (259)
..+|+++|.+|+|||||+|+|++. ..... ...+++|....... -+..+.++||||+.+.......+..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 457999999999999999999987 22222 22345666554432 123478999999986542222222222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
...+ .....+|+++|++++.+.+.......++.+.. ...|+++++||.|.+..
T Consensus 237 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-----~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIKG-----GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEE
T ss_pred HHHH-hcccccCceEEEEcCCceEEECCEEEEEEccC-----CCceEEEEecCCccccc
Confidence 2222 12256799999999852211111111222221 12389999999998855
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.25 E-value=2.7e-10 Score=97.02 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....++|+|++|||||||+|.|++
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 203
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.24 E-value=1.2e-11 Score=98.88 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-----cccccCCCCCcce--------eeEEEEEE-----------------eeC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR-----AFKSKAGSSGVTK--------TCEMQRTM-----------------LKD 67 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~T~--------~~~~~~~~-----------------~~~ 67 (259)
..++|+++|.+|||||||+|.|++.. .......+ +.+. ......+. ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV-VSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC-CCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC-CCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 45799999999999999999998642 11111111 1110 00000000 012
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
+..+.+|||||...... ......+.+++|+|++..... ..... ...+ .|.++|+||+
T Consensus 108 ~~d~iiidt~G~~~~~~--------------~~~~~~~~~i~vvd~~~~~~~----~~~~~-~~~~----~~~iiv~NK~ 164 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV--------------DFDLGENYRVVMVSVTEGDDV----VEKHP-EIFR----VADLIVINKV 164 (221)
T ss_dssp TCSEEEEEEEEBSSGGG--------------GCCCSCSEEEEEEEGGGCTTH----HHHCH-HHHH----TCSEEEEECG
T ss_pred CCCEEEEeCCCCCCCCc--------------hhccccCcEEEEEeCCCcchh----hhhhh-hhhh----cCCEEEEecc
Confidence 34688999988421100 011245788999998744221 11111 1122 3899999999
Q ss_pred CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
|+........+ .+...+...+....++..++..+ .++.+|++.+.+.+.
T Consensus 165 Dl~~~~~~~~~---------~~~~~~~~~~~~~~i~~~Sa~~g----~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 165 ALAEAVGADVE---------KMKADAKLINPRAKIIEMDLKTG----KGFEEWIDFLRGILN 213 (221)
T ss_dssp GGHHHHTCCHH---------HHHHHHHHHCTTSEEEECBTTTT----BTHHHHHHHHHHHHC
T ss_pred cCCcchhhHHH---------HHHHHHHHhCCCCeEEEeecCCC----CCHHHHHHHHHHHHH
Confidence 97632001122 22233333333333444444443 789999999887664
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.20 E-value=2.5e-10 Score=99.45 Aligned_cols=172 Identities=17% Similarity=0.105 Sum_probs=96.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee-eEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT-CEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~-~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 97 (259)
...++|+|++|||||||+|.|+|...+..+....+.+.. ...+.........+.++|+||++.....-. ++...+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~----~~L~~~ 144 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----TYLEKM 144 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHH----HHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHH----HHHHHc
Confidence 458999999999999999999996543333222211110 001111111123689999999874322211 222222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC-------CCcccHHhhhCCCCCchHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE-------DNDETLEDYLGPECPKPLK 170 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~-------~~~~~~~~~~~~~~~~~l~ 170 (259)
. ....+.+++ ++.. +.......+...+.. .+ .|+++|+||.|.+- -+.....+++. .++
T Consensus 145 ~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~----~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~-----~l~ 210 (413)
T 1tq4_A 145 K--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MK----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ-----DIR 210 (413)
T ss_dssp T--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TT----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH-----HHH
T ss_pred C--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cC----CCeEEEEecCcccccCcccccCCHHHHHHHHH-----HHH
Confidence 2 122345544 7776 467777777777766 33 39999999998751 11112222221 233
Q ss_pred HHH----HHc---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985 171 EIL----QLC---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG 212 (259)
Q Consensus 171 ~~~----~~~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~ 212 (259)
.+. ... ....+.+++..... .++++|.+.|.+.+++..
T Consensus 211 ~l~~~~l~~~g~~~~~iiliSsh~l~~----~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 211 LNCVNTFRENGIAEPPIFLLSNKNVCH----YDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHHTTCSSCCEEECCTTCTTS----TTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHhcCCCCCcEEEEecCcCCc----cCHHHHHHHHHHhCccch
Confidence 332 121 12455666643322 579999999999887653
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.20 E-value=4.4e-10 Score=100.21 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=71.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-c--------e--eeEEEEEE--------------e
Q 024985 17 NAERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-T--------K--TCEMQRTM--------------L 65 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-T--------~--~~~~~~~~--------------~ 65 (259)
....+|+++|.+||||||+++.|. |..+......+... . . ...++... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998 66543322211100 0 0 01111100 0
Q ss_pred --eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEE
Q 024985 66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIV 142 (259)
Q Consensus 66 --~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~iv 142 (259)
..+..++||||||.... ...+..++...... ..+|.+++|+|+..+.. ....++.+.+. .| ..|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv 245 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV 245 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence 15668999999998742 22233333333221 16789999999985543 33334444331 26 489
Q ss_pred EEeCCCCCCC
Q 024985 143 VFTGGNELED 152 (259)
Q Consensus 143 V~nk~D~~~~ 152 (259)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998743
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=105.31 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=48.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC----------------CcEEEEEeCCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD----------------GQVVNVIDTPGLF 80 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~----------------~~~~~liDTPG~~ 80 (259)
....+|+++|.+|||||||+|+|++... .....+++|..+....+...+ ...+.+|||||+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 3457899999999999999999999865 222234455444444333211 2259999999988
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
........+...+... +..+|++++|+|+.
T Consensus 98 ~~as~~~glg~~~l~~----ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSH----ISACDGIFHLTRAF 127 (396)
T ss_dssp ---------CCHHHHH----HHTSSSEEEEEEC-
T ss_pred cccchhhHHHHHHHHH----HHhcCeEEEEEecC
Confidence 6433222232233333 34669999999986
No 207
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.16 E-value=1.1e-10 Score=105.87 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=65.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEE--eeCCcEEEEEeCCCCCCCCC-ChHHHHH
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDSSA-DSEFVSK 91 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~--~~~~~~~~liDTPG~~~~~~-~~~~~~~ 91 (259)
..+..+|+|+|++|+|||||+|+|+|... +..+..+.++|......... ...+..+.|+||||+.+... +...-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 34568899999999999999999999874 22222223444433322111 12467899999999986432 1111111
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES 130 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~ 130 (259)
.+.-.+..+ + ++|+++...++..+...+..+.+
T Consensus 115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 111111112 2 46667666888888877776554
No 208
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.08 E-value=4.6e-09 Score=91.96 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=79.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-----------ceeeEEEEEE--------------e-
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-----------TKTCEMQRTM--------------L- 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-----------T~~~~~~~~~--------------~- 65 (259)
++..|+++|++||||||+++.|. |..+......+... ......+... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999986 44332221111100 0001111000 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
..+..++||||||.... ......++...... ..+|.+++|+|+..+ .........+.+.. .+..||+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence 13467999999997642 23334444333222 246899999999743 22233344444322 2677999
Q ss_pred eCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 145 TGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
||+|.... ...+..+...++.++.++...
T Consensus 247 TKlD~~~~-------------gG~~ls~~~~~g~PI~fig~G 275 (443)
T 3dm5_A 247 TKLDGSAK-------------GGGALSAVAATGAPIKFIGTG 275 (443)
T ss_dssp ECCSSCSS-------------HHHHHHHHHTTCCCEEEEECS
T ss_pred ECCCCccc-------------ccHHHHHHHHHCCCEEEEEcC
Confidence 99997643 112334445556666555543
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.06 E-value=2.1e-09 Score=90.73 Aligned_cols=131 Identities=11% Similarity=0.124 Sum_probs=75.3
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-------CCCC-HhHHHHHHHHHHHhccc--
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-------NRFS-EEGGAAIHSLESLFGKK-- 135 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-------~~~~-~~~~~~l~~l~~~~~~~-- 135 (259)
.++..+.+|||+|- +.+......++.+++++|||+|++ +.-+ ..-.+.+.++.......
T Consensus 164 ~~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp ETTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred eeceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 46678999999993 244555567889999999999764 1111 11123455555544332
Q ss_pred ccCeEEEEEeCCCCCCCC--cccHHhhhCCCC--Cc---hHHHHHH----H---c-CCcEEEEeCCCcccccchhHHHHH
Q 024985 136 VFDYMIVVFTGGNELEDN--DETLEDYLGPEC--PK---PLKEILQ----L---C-ENRRVLFDNKTKDAATRTEQVGKL 200 (259)
Q Consensus 136 ~~~~~ivV~nk~D~~~~~--~~~~~~~~~~~~--~~---~l~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~i~eL 200 (259)
...|+++++||+|+.... ...+..+..... .. .....+. . . ...++.+.+++.+. .++.++
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~----~nV~~v 308 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT----ENIRFV 308 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH----HHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC----HHHHHH
Confidence 235999999999986321 012222221110 00 1111111 0 1 23345555666554 899999
Q ss_pred HHHHHHHHHHh
Q 024985 201 ISLVNSVILEN 211 (259)
Q Consensus 201 l~~i~~~~~~~ 211 (259)
+..+.+.+.++
T Consensus 309 F~~v~~~Il~~ 319 (327)
T 3ohm_A 309 FAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.05 E-value=3.4e-10 Score=94.02 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=42.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE 87 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~ 87 (259)
....+|+++|.||+|||||+|+|+|.....++. .+++|+..... . -+..+.++||||+........
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWV--K--VGKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCCH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCCH
Confidence 345799999999999999999999987644432 34556555432 2 245789999999987665443
No 211
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.04 E-value=1.2e-09 Score=100.00 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985 69 QVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAK-DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
..+.++|.||+...... .......+...+.... ....+++++++++..+...+ .++.+...-. ...++++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~--~l~la~~v~~--~g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE--ALSMAQEVDP--EGDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH--HHHHHHHHCS--SCCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH--HHHHHHHHhh--cCCceEEEec
Confidence 35899999998753221 1122334444444322 33356677777653433222 4444444321 1248999999
Q ss_pred CCCCCCC
Q 024985 146 GGNELED 152 (259)
Q Consensus 146 k~D~~~~ 152 (259)
|+|.+..
T Consensus 223 K~Dlv~~ 229 (608)
T 3szr_A 223 KPDLVDK 229 (608)
T ss_dssp CGGGSSS
T ss_pred chhhcCc
Confidence 9999865
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=4.5e-10 Score=97.14 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=60.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC-----------------cEEEEEeCCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGL 79 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~liDTPG~ 79 (259)
....+|+|+|++|||||||+|+|+|....... ..+++|..+....+. ..+ ..+.+|||||+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~-v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVA-VPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEE-ECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeee-eCCcchhhhhhhcccccccCcceEEEecccc
Confidence 34679999999999999999999997642222 234455555444443 232 35899999998
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985 80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR 114 (259)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (259)
.......+.+...+... ...+|++++|+|+.
T Consensus 96 ~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 86543333233333333 34679999999985
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.03 E-value=2.6e-09 Score=91.39 Aligned_cols=131 Identities=13% Similarity=0.098 Sum_probs=75.1
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC--------CHhHHHHHHHHHHHhccc--
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF--------SEEGGAAIHSLESLFGKK-- 135 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~-- 135 (259)
.++..+.+|||+|-. .+......++.+++++|||+|+++.- ...-.+++.++..+....
T Consensus 190 ~~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 190 FKDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp ETTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred eCCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 456789999999943 23333456788999999999998421 111233445555544322
Q ss_pred ccCeEEEEEeCCCCCCCCc--ccHHhhhCC----CCCchHHHHHH----Hc-----CCcEEEEeCCCcccccchhHHHHH
Q 024985 136 VFDYMIVVFTGGNELEDND--ETLEDYLGP----ECPKPLKEILQ----LC-----ENRRVLFDNKTKDAATRTEQVGKL 200 (259)
Q Consensus 136 ~~~~~ivV~nk~D~~~~~~--~~~~~~~~~----~~~~~l~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~i~eL 200 (259)
...|+++|+||+|+....- ..+..+... .........+. .. ...+.++..++.+. .++.++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~----~nV~~v 334 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT----KNVQFV 334 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH----HHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc----hhHHHH
Confidence 2359999999999852200 111111100 00112222222 11 23456666776655 899999
Q ss_pred HHHHHHHHHHh
Q 024985 201 ISLVNSVILEN 211 (259)
Q Consensus 201 l~~i~~~~~~~ 211 (259)
+..+.+.+.+.
T Consensus 335 F~~v~~~i~~~ 345 (353)
T 1cip_A 335 FDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887776543
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.98 E-value=1e-09 Score=87.87 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
..++|+++|.+|||||||++.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999854
No 215
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.92 E-value=3.2e-08 Score=83.85 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=49.7
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC-------C-CCHhHHHHHHHHHHHhccc--
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN-------R-FSEEGGAAIHSLESLFGKK-- 135 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~-- 135 (259)
.++..+.+|||+|- +.+......++.+++++|||+|++. . -...-.+.+.++.......
T Consensus 158 ~~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 158 VKDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SSSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 45678999999993 2455555678899999999999861 0 1111123444444444322
Q ss_pred ccCeEEEEEeCCCCCC
Q 024985 136 VFDYMIVVFTGGNELE 151 (259)
Q Consensus 136 ~~~~~ivV~nk~D~~~ 151 (259)
...|+++++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 2359999999999863
No 216
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.88 E-value=7e-09 Score=91.01 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCC----------------------CC-cceeeE-E--EEEEe
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR------RAFKSKAGS----------------------SG-VTKTCE-M--QRTML 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~------~~~~~~~~~----------------------~~-~T~~~~-~--~~~~~ 65 (259)
.+..|+++|++|+||||+++.|.+. .+......+ .+ .+.+.. . ..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998752 211111100 00 111110 0 00011
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccccc-CeEEEEE
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF-DYMIVVF 144 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivV~ 144 (259)
..+..++||||||.... ...+...+.. + .....+|.++||+|+..+. . .+..+.. +... . ....+|+
T Consensus 178 ~~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVl 245 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIV 245 (432)
T ss_dssp TSSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEE
T ss_pred hhCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEE
Confidence 24568999999997642 2333333322 1 2233689999999987442 1 2222222 2211 1 2488999
Q ss_pred eCCCCCC
Q 024985 145 TGGNELE 151 (259)
Q Consensus 145 nk~D~~~ 151 (259)
||+|...
T Consensus 246 nK~D~~~ 252 (432)
T 2v3c_C 246 TKLDGSA 252 (432)
T ss_dssp ECSSSCS
T ss_pred eCCCCcc
Confidence 9999763
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.84 E-value=2.6e-09 Score=87.72 Aligned_cols=60 Identities=28% Similarity=0.429 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~ 84 (259)
.+|+++|.+|+|||||+|+|++......+ ..+++|+..... .-+..+.+|||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWF----SLENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEE----EeCCCEEEEECCCcccCcC
Confidence 58999999999999999999998764433 234555544332 2235788999999997654
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.83 E-value=2.4e-08 Score=87.35 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=69.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-----------ceeeEEEEE--------------Ee-
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-----------TKTCEMQRT--------------ML- 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-----------T~~~~~~~~--------------~~- 65 (259)
.+..|+++|++||||||++..|. |..+.......... ......+.. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999986 33322111110000 000000000 00
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
..+..++||||||..... .......++....... .+|.+++|+|+..+ .......+.+.+..+ +..||+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence 124579999999975411 1222334444433222 45899999999743 222344455554333 788999
Q ss_pred eCCCCCC
Q 024985 145 TGGNELE 151 (259)
Q Consensus 145 nk~D~~~ 151 (259)
||+|...
T Consensus 246 TKlD~~a 252 (433)
T 3kl4_A 246 TKMDGTA 252 (433)
T ss_dssp ECGGGCS
T ss_pred ecccccc
Confidence 9999763
No 219
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.71 E-value=4.5e-08 Score=85.93 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC-----------------CcccccCCCCCcceeeEEEEE----EeeC--CcEEEE
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR-----------------RAFKSKAGSSGVTKTCEMQRT----MLKD--GQVVNV 73 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~-----------------~~~~~~~~~~~~T~~~~~~~~----~~~~--~~~~~l 73 (259)
.+...|+|+|++++|||||+|.|+|. ..+..+.....+|+.+-.... .... ...+++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 35578999999999999999999863 222222222223332221110 0012 247999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985 74 IDTPGLFDSSADSEFVSKEIVKC-IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES 130 (259)
Q Consensus 74 iDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~ 130 (259)
+||||+++...+ ......+... +..+ +++||-+ ...+...+...|..+.+
T Consensus 145 lDTeG~~~~~~~-~~~d~~ifal~~lLS----s~~IyN~--~~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 145 MDTQGTFDSQST-LRDSATVFALSTMIS----SIQVYNL--SQNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEECCCSSHHH-HHHHHHHHHHHHHHC----SEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred EcCCcccccccc-hhhhHHHHHHHHHHh----hHHHHhh--cccccHHHHHHHHHHHH
Confidence 999999875321 1111111111 1112 4555544 33677777777776655
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.66 E-value=9.9e-07 Score=73.84 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=78.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCC--Cc---------ceeeEEEEEE----------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSS--GV---------TKTCEMQRTM---------------- 64 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~--~~---------T~~~~~~~~~---------------- 64 (259)
....|+++|++||||||+++.|.+... ...+.... +. ...+.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999974321 11111100 00 0001111000
Q ss_pred eeCCcEEEEEeCCCCCCCCCChHHHHHHH---HHHHh-hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE
Q 024985 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEI---VKCIG-MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM 140 (259)
Q Consensus 65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (259)
...+..+.++||+|..... .....++ ...+. .....++.+++++|+..+. .....+..+.+..+ ..
T Consensus 181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t 250 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LT 250 (304)
T ss_dssp HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CS
T ss_pred HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----Cc
Confidence 0113357899999976432 2222222 22222 2334678888999987442 22334444444334 67
Q ss_pred EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
+|++||.|.... ...+-.+....+.++.++...
T Consensus 251 ~iivTh~d~~a~-------------gg~~l~i~~~~~~pi~~ig~G 283 (304)
T 1rj9_A 251 GVIVTKLDGTAK-------------GGVLIPIVRTLKVPIKFVGVG 283 (304)
T ss_dssp EEEEECTTSSCC-------------CTTHHHHHHHHCCCEEEEECS
T ss_pred EEEEECCccccc-------------ccHHHHHHHHHCCCeEEEeCC
Confidence 899999986532 223445566667777766654
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.60 E-value=1e-06 Score=78.00 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCc------c-----eeeEEEEEE----------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSSGV------T-----KTCEMQRTM---------------- 64 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~~~------T-----~~~~~~~~~---------------- 64 (259)
....|+|+|++|||||||++.|.|.. +...+...... . ..+.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 45689999999999999999987532 11111111000 0 001111000
Q ss_pred eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---hhc-CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE
Q 024985 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GMA-KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM 140 (259)
Q Consensus 65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (259)
...+..++||||+|.... ...+..++.... ... ...++-++||+|++.+ ......++.+.+.++ ..
T Consensus 372 ~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----it 441 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LT 441 (503)
T ss_dssp HHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CS
T ss_pred HhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----CC
Confidence 013456899999997642 233333333322 211 2236788999998733 222334444544444 56
Q ss_pred EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.+|+||.|.... -..+-.++...+.++.++...
T Consensus 442 gvIlTKLD~tak-------------gG~~lsi~~~~~~PI~fig~G 474 (503)
T 2yhs_A 442 GITLTKLDGTAK-------------GGVIFSVADQFGIPIRYIGVG 474 (503)
T ss_dssp EEEEECGGGCSC-------------CTHHHHHHHHHCCCEEEEECS
T ss_pred EEEEEcCCCccc-------------ccHHHHHHHHHCCCEEEEecC
Confidence 689999996422 223445666667676666554
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.60 E-value=1.6e-06 Score=73.31 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=77.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccc------ccCCCC--Cc-------ce--eeEEEEEE---------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFK------SKAGSS--GV-------TK--TCEMQRTM--------------- 64 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~------~~~~~~--~~-------T~--~~~~~~~~--------------- 64 (259)
.++..|+++|++||||||+++.|.+..... .+.... +. .. ...+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 346789999999999999999997542111 110000 00 00 00010000
Q ss_pred -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985 65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV 143 (259)
Q Consensus 65 -~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV 143 (259)
...+..+.++||+|....... ...++....... .+|-.++++|+..+. .-...+..+.+..+ ...+|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~~--~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAGN--AIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHHH--HHHHHHHHHHHhcC-----CCEEE
Confidence 012345789999998643222 233333222111 357889999986431 22233344433333 66899
Q ss_pred EeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 144 FTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
+||.|.... -..+-.+....+.++.++...
T Consensus 275 lTKlD~~a~-------------~G~~l~~~~~~~~pi~~i~~G 304 (328)
T 3e70_C 275 LTKLDADAR-------------GGAALSISYVIDAPILFVGVG 304 (328)
T ss_dssp EECGGGCSC-------------CHHHHHHHHHHTCCEEEEECS
T ss_pred EeCcCCccc-------------hhHHHHHHHHHCCCEEEEeCC
Confidence 999997432 123334555667676666654
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.55 E-value=8.8e-07 Score=73.92 Aligned_cols=123 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-ce----------eeEEEE--------------EEe--
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-TK----------TCEMQR--------------TML-- 65 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-T~----------~~~~~~--------------~~~-- 65 (259)
...|+++|++|+||||+++.|. |..+.......... +. ...... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999886 33332222111100 00 000000 000
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
..+..++||||||.... .....+..++..... ...+|.+++|+|+... ......++.+.+ . .....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEEE
T ss_pred hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEEe
Confidence 14557999999997641 122223333322211 1146899999998732 222223333322 1 123778999
Q ss_pred CCCCCC
Q 024985 146 GGNELE 151 (259)
Q Consensus 146 k~D~~~ 151 (259)
|+|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999753
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.54 E-value=2e-06 Score=75.39 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=66.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-------CCCcccccCCCCCc-ce----------eeEEEE--------------EE
Q 024985 17 NAERTLVLVGRTGNGKSATGNSIL-------GRRAFKSKAGSSGV-TK----------TCEMQR--------------TM 64 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~-------~~~~~~~~~~~~~~-T~----------~~~~~~--------------~~ 64 (259)
.++..|+++|.+|+||||+...|. |..+......+... .. ...... +.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346789999999999999999887 65543322221110 00 000000 00
Q ss_pred e--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEE
Q 024985 65 L--KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIV 142 (259)
Q Consensus 65 ~--~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 142 (259)
. ..+..++||||||.... .......+..... ...++.+++|+|+..+. .....++.+.. .. ...-|
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~~----~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFNE----AL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHHH----HS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHhc----cC-CCeEE
Confidence 0 13568999999997542 1223333332211 22568899999987432 12222332222 11 12457
Q ss_pred EEeCCCCCC
Q 024985 143 VFTGGNELE 151 (259)
Q Consensus 143 V~nk~D~~~ 151 (259)
|+||+|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999753
No 225
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.49 E-value=6.5e-07 Score=76.74 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=69.0
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC--------CHhHHHHHHHHHHHhccc--
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF--------SEEGGAAIHSLESLFGKK-- 135 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~-- 135 (259)
.++..+.+|||||.. .+......++.+++++|||+|+++.- ...-...+.++.......
T Consensus 198 ~~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 198 IKNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred eCCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 467899999999953 33344456778999999999998410 111123444444443321
Q ss_pred ccCeEEEEEeCCCCCCCC--cccHHhhhCCCC-C-chHHHHHHH-------c-----CCcEEEEeCCCcccccchhHHHH
Q 024985 136 VFDYMIVVFTGGNELEDN--DETLEDYLGPEC-P-KPLKEILQL-------C-----ENRRVLFDNKTKDAATRTEQVGK 199 (259)
Q Consensus 136 ~~~~~ivV~nk~D~~~~~--~~~~~~~~~~~~-~-~~l~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~i~e 199 (259)
...|+++|+||+|+.... ...+..+..... . ....+.... . ...++++..++.+. .++.+
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~----~nV~~ 342 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT----ENIRL 342 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH----HHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc----hhHHH
Confidence 235999999999986320 011111111000 0 111111111 1 22345566666554 89999
Q ss_pred HHHHHHHHHHH
Q 024985 200 LISLVNSVILE 210 (259)
Q Consensus 200 Ll~~i~~~~~~ 210 (259)
++..+.+.+.+
T Consensus 343 vF~~v~~~i~~ 353 (362)
T 1zcb_A 343 VFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.36 E-value=1.6e-05 Score=66.51 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCcc-----------eeeEEEEE----------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSSGVT-----------KTCEMQRT---------------- 63 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~~~T-----------~~~~~~~~---------------- 63 (259)
.....|+++|++|+||||++..|.+.. +...+....... ........
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345689999999999999999886422 111110000000 00000000
Q ss_pred EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985 64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 64 ~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
....+..++++||||.. .....+..++...... ....+|.+++|+|+..+ .......+.+.+.. ..
T Consensus 182 a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~-----~i 251 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NV 251 (306)
T ss_dssp HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CC
T ss_pred HHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcC-----CC
Confidence 01134469999999963 2333344444333221 12357889999998622 11222222232211 24
Q ss_pred EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.-+|+||.|.... -..+-.+....+.++.++...
T Consensus 252 ~gvVlTk~D~~~~-------------gG~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 252 TGIILTKLDGTAK-------------GGITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp CEEEEECGGGCSC-------------TTHHHHHHHHHCCCEEEEECS
T ss_pred CEEEEeCCCCccc-------------hHHHHHHHHHHCCCEEEEeCC
Confidence 5678899997533 223445666667676666554
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.29 E-value=1.3e-05 Score=66.97 Aligned_cols=146 Identities=14% Similarity=0.208 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCCCc-------c----eeeEEEEEE----------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSSGV-------T----KTCEMQRTM---------------- 64 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~~~-------T----~~~~~~~~~---------------- 64 (259)
+...++++|++||||||+++.|.|... ...+...... + ..+.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 456899999999999999999875421 1111111000 0 001111000
Q ss_pred -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHh-hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985 65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVK---CIG-MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 65 -~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
...+....++||.|+... ......++.+ .+. .....++-+++|+|++.++.... .+..+.+..+ .
T Consensus 179 ~~~~~~d~~lldt~gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-----~ 248 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I 248 (302)
T ss_dssp HHHTTCSEEEECCCCCSSC---CHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred HHHcCCcchHHhcCCCCcc---hhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----C
Confidence 011234679999998643 2222222221 122 22345777789999765544332 2333433233 5
Q ss_pred EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.++++||.|.... -...-.+....+.++.++...
T Consensus 249 t~iiiThlD~~~~-------------~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 249 TGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp CEEEEECCSSCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred CEEEEeCCCCCCc-------------cChheehHHHHCCCEEEEeCC
Confidence 6789999886532 122334555556666666654
No 228
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.28 E-value=7.4e-06 Score=71.66 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh-------C----------CCcccccCCCCCcceeeEEEE----EEeeCC--cEEE
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSIL-------G----------RRAFKSKAGSSGVTKTCEMQR----TMLKDG--QVVN 72 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~-------~----------~~~~~~~~~~~~~T~~~~~~~----~~~~~~--~~~~ 72 (259)
..+...|.|+|++++|||+|+|.|+ + ...|..+....++|+.+-... ....++ ..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3456788899999999999999775 2 234444444455555443321 111123 4699
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985 73 VIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES 130 (259)
Q Consensus 73 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~ 130 (259)
++||.|+++.......-..-+.-.+-.+ +++||-+. ..+...+.+.|..+.+
T Consensus 144 llDTEG~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEECCBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCccccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence 9999999887654322111121111222 45555554 3567777777766654
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.26 E-value=1.2e-05 Score=70.14 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=63.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCc-c----------eeeEEEEE--------------Ee-
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGSSGV-T----------KTCEMQRT--------------ML- 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~~~~-T----------~~~~~~~~--------------~~- 65 (259)
+...|+++|++|+||||++..|.+ ..+...+...... . ........ ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456889999999999999988753 2221111111100 0 00001100 00
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
..+..++||||||.... ......++....... .+|.+++|+|+... ......++.+.+.. ...-||+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence 13457999999997643 222333333222211 46888999998732 11122233222211 2466899
Q ss_pred eCCCCC
Q 024985 145 TGGNEL 150 (259)
Q Consensus 145 nk~D~~ 150 (259)
||.|..
T Consensus 245 TKlD~~ 250 (425)
T 2ffh_A 245 TKLDGD 250 (425)
T ss_dssp ESGGGC
T ss_pred eCcCCc
Confidence 999965
No 230
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.26 E-value=1.6e-05 Score=67.83 Aligned_cols=146 Identities=14% Similarity=0.203 Sum_probs=77.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCCCc-------c----eeeEEEEEEe---------------
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSSGV-------T----KTCEMQRTML--------------- 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~~~-------T----~~~~~~~~~~--------------- 65 (259)
+...|+++|++||||||+++.|.+... ...+...... + ..+.+.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 456899999999999999999875321 1111111000 0 0011110000
Q ss_pred --eCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHh-hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985 66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVK---CIG-MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139 (259)
Q Consensus 66 --~~~~~~~liDTPG~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (259)
..+....++||.|+.... .....++.+ .+. .....++-+++|+|++.++.... .+..+.+..+ .
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----~ 305 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I 305 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred HHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----C
Confidence 012346899999986432 222222221 111 22346777889999764444332 2333333233 6
Q ss_pred EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
.+|++||.|.... --..-.+....+.++.++...
T Consensus 306 t~iiiThlD~~~~-------------gG~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 306 TGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp CEEEEESCTTCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred eEEEEecCccccc-------------ccHHHHHHHHhCCCEEEEeCC
Confidence 7789999886532 112334555566677666654
No 231
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.25 E-value=2.1e-05 Score=66.24 Aligned_cols=147 Identities=19% Similarity=0.206 Sum_probs=76.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCc--------------ceeeEEE-E-------------
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGSSGV--------------TKTCEMQ-R------------- 62 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~~~~--------------T~~~~~~-~------------- 62 (259)
.+...|+++|++|+||||++..|.+ ..+...+...... .....+. .
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 3456899999999999999988753 2221111111100 0001111 0
Q ss_pred -E--EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHhh-cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc
Q 024985 63 -T--MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK---CIGM-AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK 135 (259)
Q Consensus 63 -~--~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~ 135 (259)
. ....+..++||||||.... ......++.. .+.. ....+|.+++|+++..+ . ..+..+.. +...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHH-HTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHH-Hhhc
Confidence 0 0013457999999996531 1222223322 2221 12347899999998722 2 23444443 3321
Q ss_pred ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985 136 VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK 186 (259)
Q Consensus 136 ~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (259)
....-+|+||.|.... ...+..+....+.++.++...
T Consensus 254 -~~i~GvVltk~d~~~~-------------~g~~~~~~~~~~~Pi~~i~~G 290 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTSK-------------GGIGLAIKELLNIPIKMIGVG 290 (320)
T ss_dssp -SCCCEEEEECGGGCSC-------------TTHHHHHHHHHCCCEEEEECS
T ss_pred -CCCcEEEEeCCCCCCc-------------hhHHHHHHHHHCcCEEEEeCC
Confidence 1244588999996432 123445555667666665544
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.19 E-value=4e-07 Score=76.16 Aligned_cols=58 Identities=29% Similarity=0.367 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
...++|+|++|||||||+|+|+|...+.++.-.. .+|+..... . .. .-.++||||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~-~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--H-TS--GGLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--E-ET--TEEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--h-cC--CEEEecCCCccc
Confidence 4589999999999999999999876544332211 233322221 1 11 247899999864
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.19 E-value=2.1e-06 Score=71.66 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-------cccccCCCCCccee-----------eEEEE----------EEeeCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR-------AFKSKAGSSGVTKT-----------CEMQR----------TMLKDGQ 69 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~-------~~~~~~~~~~~T~~-----------~~~~~----------~~~~~~~ 69 (259)
....|+++|++|+||||++..|.+.. +......+...+.. ..... +....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 45689999999999999999885322 11111111000000 00000 0001345
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE 149 (259)
Q Consensus 70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~ 149 (259)
.++|+||||.... ......++...+. ...++.+++|+|++... . .+..+.+.+. .....-+|+||.|.
T Consensus 184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~--~---~~~~~~~~~~--~l~~~giVltk~D~ 251 (296)
T 2px0_A 184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY--E---DMKHIVKRFS--SVPVNQYIFTKIDE 251 (296)
T ss_dssp SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH--H---HHHHHTTTTS--SSCCCEEEEECTTT
T ss_pred CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH--H---HHHHHHHHHh--cCCCCEEEEeCCCc
Confidence 7999999998642 1222223333221 12357788999887331 1 1222223232 12245578899997
Q ss_pred CC
Q 024985 150 LE 151 (259)
Q Consensus 150 ~~ 151 (259)
..
T Consensus 252 ~~ 253 (296)
T 2px0_A 252 TT 253 (296)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 234
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.08 E-value=1.4e-05 Score=69.13 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=48.8
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC---------CCHhHHHHHHHHHHHhccc-
Q 024985 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR---------FSEEGGAAIHSLESLFGKK- 135 (259)
Q Consensus 66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~---------~~~~~~~~l~~l~~~~~~~- 135 (259)
.++..+.+|||+|-. .+......++.+++++|||+|+++- ... -..+..++..+....
T Consensus 214 ~~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 214 VDKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRW 281 (402)
T ss_dssp ETTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTT
T ss_pred cCCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhccc
Confidence 467899999999953 2333445678899999999999840 111 123444555444321
Q ss_pred -ccCeEEEEEeCCCCC
Q 024985 136 -VFDYMIVVFTGGNEL 150 (259)
Q Consensus 136 -~~~~~ivV~nk~D~~ 150 (259)
...|++||+||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 234999999999975
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.03 E-value=3.6e-05 Score=64.10 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCCCC-cce----------eeEEEE--------------EEe-
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR------RAFKSKAGSSG-VTK----------TCEMQR--------------TML- 65 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~------~~~~~~~~~~~-~T~----------~~~~~~--------------~~~- 65 (259)
....|+++|++|+||||++..|.+. .+...+..... ... ...... ...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999887532 21111111100 000 000000 000
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985 66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF 144 (259)
Q Consensus 66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 144 (259)
..+..++|+||||.... ......++....... .++.+++|+|+... .. .++.+.. +... ....-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~---~~~~~~~-~~~~-~~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QE---ALSVARA-FDEK-VGVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HH---HHHHHHH-HHHH-TCCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HH---HHHHHHH-Hhhc-CCCCEEEE
Confidence 13457999999986532 122233333332222 35788899998622 22 2333332 2211 12456899
Q ss_pred eCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeC
Q 024985 145 TGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDN 185 (259)
Q Consensus 145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 185 (259)
||.|.... -...-.+....+.++.++..
T Consensus 245 nk~d~~~~-------------~g~~~~~~~~~~~pi~~i~~ 272 (295)
T 1ls1_A 245 TKLDGDAR-------------GGAALSARHVTGKPIYFAGV 272 (295)
T ss_dssp ECGGGCSS-------------CHHHHHHHHHHCCCEEEEC-
T ss_pred ECCCCCcc-------------HHHHHHHHHHHCcCEEEEeC
Confidence 99996533 11233455555666655544
No 236
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.03 E-value=1.6e-05 Score=67.80 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=44.9
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC-------C-CCHhHHHHHHHHHHHhccc--cc
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN-------R-FSEEGGAAIHSLESLFGKK--VF 137 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~--~~ 137 (259)
...+.+|||+|-.. +......++++++++|||+|++. . -...-..+..++..+.... ..
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 45899999999542 23334567889999999999860 1 1111123444444433221 23
Q ss_pred CeEEEEEeCCCCC
Q 024985 138 DYMIVVFTGGNEL 150 (259)
Q Consensus 138 ~~~ivV~nk~D~~ 150 (259)
.|+++|+||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 5999999999975
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.02 E-value=2.7e-06 Score=72.60 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc-cccc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA-FKSK 48 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~-~~~~ 48 (259)
..++|+|++|||||||+|.|+|... +.++
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccC
Confidence 4799999999999999999999765 4433
No 238
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.98 E-value=9.3e-06 Score=67.89 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
...++++|++|||||||+|+|. ...+.++.-.. .+|+..... . ... .-.++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~-~~~-~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--P-FGK-GSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--E-ETT-TEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--E-cCC-CcEEEECcCcCc
Confidence 3578999999999999999999 65433332211 122222211 1 112 236899999863
No 239
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.94 E-value=7.3e-06 Score=68.48 Aligned_cols=59 Identities=27% Similarity=0.282 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~ 81 (259)
...++++|++|||||||+|.|.|...+..+.-.. .+|...... . .. ..-.++||||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~-~~-~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--K-FD-FGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--E-CT-TSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--E-cC-CCCEEEECcCCCc
Confidence 3578999999999999999999877544432111 122222111 1 11 1236899999764
No 240
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.70 E-value=4.5e-05 Score=63.05 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=50.8
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (259)
....+|++++|+|+..+.+.....+-++ ++ .+|.++|+||+|+.+. ...+. +....+..+..
T Consensus 20 ~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l~---~kp~ilVlNK~DL~~~--~~~~~---------~~~~~~~~g~~ 81 (282)
T 1puj_A 20 KLKLIDIVYELVDARIPMSSRNPMIEDI----LK---NKPRIMLLNKADKADA--AVTQQ---------WKEHFENQGIR 81 (282)
T ss_dssp HGGGCSEEEEEEETTSTTTTSCHHHHHH----CS---SSCEEEEEECGGGSCH--HHHHH---------HHHHHHTTTCC
T ss_pred HHhhCCEEEEEEeCCCCCccCCHHHHHH----HC---CCCEEEEEECcccCCH--HHHHH---------HHHHHHhcCCc
Confidence 3445699999999986665543222222 22 3599999999999853 22222 11223333444
Q ss_pred EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 180 RVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
++.+++... .++.+|++.+.++++
T Consensus 82 ~i~iSA~~~------~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 82 SLSINSVNG------QGLNQIVPASKEILQ 105 (282)
T ss_dssp EEECCTTTC------TTGGGHHHHHHHHHH
T ss_pred EEEEECCCc------ccHHHHHHHHHHHHH
Confidence 445554422 567777777776654
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=4.3e-06 Score=65.35 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
....|+|+|++|||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998654
No 242
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.60 E-value=0.00012 Score=62.74 Aligned_cols=101 Identities=8% Similarity=0.089 Sum_probs=58.9
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985 92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171 (259)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (259)
.+.+.+......+|++++|+|+++. +..+...+.+.++ .+|+++|+||+|+.+. ....+.+. ..++.
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~--~~~~~~~~----~~l~~ 124 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVG---NNKVLLVGNKADLIPK--SVKHDKVK----HWMRY 124 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSS---SSCEEEEEECGGGSCT--TSCHHHHH----HHHHH
T ss_pred HHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhC---CCcEEEEEEChhcCCc--ccCHHHHH----HHHHH
Confidence 4444444455567899999999732 2334445555444 3599999999999854 21111111 12334
Q ss_pred HHHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 172 ILQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 172 ~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
..+..+.+ ..++..++..+ .|+.+|++.+.++..
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g----~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKG----QGIAELADAIEYYRG 159 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTC----TTHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccEEEEeCCCC----cCHHHHHhhhhhhcc
Confidence 45555542 12333333333 789999999887653
No 243
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.60 E-value=0.00059 Score=53.00 Aligned_cols=69 Identities=7% Similarity=0.015 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG 147 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~ 147 (259)
...++|||||+.... .....+.. +|.+|+++..+ ..+..-..+++.+..........++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCCH---------HHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 357999999985421 12222222 48999999887 33344456666666532111223668999999
Q ss_pred CCC
Q 024985 148 NEL 150 (259)
Q Consensus 148 D~~ 150 (259)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
No 244
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.56 E-value=4.8e-05 Score=63.50 Aligned_cols=66 Identities=12% Similarity=-0.032 Sum_probs=41.6
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhH-HHHHHHHHHHhcccccCeEEEEEeC
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEG-GAAIHSLESLFGKKVFDYMIVVFTG 146 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk 146 (259)
..+.+||| .... ......++.++|++|+|+|++++. +... ..++..+.. . ..|+++|+||
T Consensus 63 ~~~~iwD~--qer~-----------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~----~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRK-----------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-N----ELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCS-----------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-T----TCEEEEEECC
T ss_pred CeEEEEEE--cccc-----------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-C----CCCEEEEEeH
Confidence 37899999 2211 111124577899999999998554 3332 233433332 1 3499999999
Q ss_pred CCCCCC
Q 024985 147 GNELED 152 (259)
Q Consensus 147 ~D~~~~ 152 (259)
+|+.+.
T Consensus 125 ~DL~~~ 130 (301)
T 1u0l_A 125 MDLYDE 130 (301)
T ss_dssp GGGCCH
T ss_pred HHcCCc
Confidence 998754
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=3.2e-05 Score=60.41 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...++|+|++|||||||++.|++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998743
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.47 E-value=5.2e-05 Score=58.22 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
..++|+|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998753
No 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.41 E-value=6.2e-05 Score=57.81 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+++|+|++|+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.40 E-value=0.0001 Score=59.19 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35799999999999999999998764
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.38 E-value=2.6e-05 Score=60.31 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
-|+|+||+|||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3889999999999999999754
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.35 E-value=8.8e-05 Score=58.23 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
....++|+|++|||||||++.|.|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998764
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.34 E-value=0.00012 Score=58.42 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
-.++|+|++|||||||++.|.|-..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999998764
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.33 E-value=9.4e-05 Score=58.77 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
....++|+|++|||||||++.|+|...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 446799999999999999999988653
No 253
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.32 E-value=0.00018 Score=58.11 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
+.-.++|+|++|||||||++.|.|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999998764
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.31 E-value=0.00015 Score=55.82 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+...|+|+|++|||||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999876
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.31 E-value=0.00011 Score=57.20 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...|+|+|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 357999999999999999999875
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.30 E-value=8.8e-05 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...++|+|++|||||||++.|.|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998754
No 257
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.30 E-value=0.00015 Score=58.35 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|+|...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999998864
No 258
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.30 E-value=0.00015 Score=62.27 Aligned_cols=100 Identities=8% Similarity=-0.023 Sum_probs=56.5
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985 93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI 172 (259)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (259)
+.+.+......++++++|+|+.+..+ .+...+.+.++ .+|+++|+||+|+++. ....+.+. ..++..
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~---~~piilV~NK~DLl~~--~~~~~~~~----~~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAA---DNPILLVGNKADLLPR--SVKYPKLL----RWMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCT---TSCEEEEEECGGGSCT--TCCHHHHH----HHHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhC---CCCEEEEEEChhcCCC--ccCHHHHH----HHHHHH
Confidence 44444444455689999999984332 23333444343 3599999999999865 21111111 123344
Q ss_pred HHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 173 LQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.+..+.+ ..++..++.. ..++.+|++.+.++..
T Consensus 128 ~~~~g~~~~~v~~iSA~~----g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAK----GIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTT----TBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCC----CCCHHHHHHHHHhhcc
Confidence 5555542 1223333332 2789999999887664
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.28 E-value=9.1e-05 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.++|+|++|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999998754
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.27 E-value=0.00016 Score=58.28 Aligned_cols=25 Identities=40% Similarity=0.387 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
-.++++|++|||||||++.|.|-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999998764
No 261
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.27 E-value=0.00017 Score=59.05 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|-..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35789999999999999999998764
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.27 E-value=0.00012 Score=57.43 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.....|+|+|++|||||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998654
No 263
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.27 E-value=0.00018 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|-..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999998764
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.26 E-value=0.00016 Score=58.51 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|+|...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999998764
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.25 E-value=0.00017 Score=57.66 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|+|...
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34789999999999999999998764
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.25 E-value=0.00017 Score=59.36 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|-..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35789999999999999999998764
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.25 E-value=0.00016 Score=57.16 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
-.++|+|++|||||||++.|+|...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999998764
No 268
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.24 E-value=0.0002 Score=58.45 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|...
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34789999999999999999998764
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.24 E-value=0.00017 Score=58.69 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|-..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34789999999999999999998764
No 270
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.23 E-value=9e-05 Score=59.17 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh-CCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL-GRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~-~~~ 43 (259)
...|+|+|++|||||||++.|. +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4579999999999999999999 764
No 271
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.22 E-value=0.00022 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|+|...
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999998764
No 272
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.22 E-value=0.00019 Score=57.81 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34789999999999999999998764
No 273
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.21 E-value=0.00023 Score=58.47 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|+|...
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999998764
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.21 E-value=0.00016 Score=56.40 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|+|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 275
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.20 E-value=0.00019 Score=56.39 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
....|+|+|++|||||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44679999999999999999998764
No 276
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.18 E-value=0.00016 Score=60.35 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|+|...+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 458999999999999999999987643
No 277
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.18 E-value=0.00022 Score=58.83 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|+|...+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 347899999999999999999987643
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.16 E-value=0.00025 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.-.++++|++|||||||++.+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 35789999999999999998654
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.16 E-value=0.00027 Score=57.85 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|-..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34789999999999999999998764
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.16 E-value=0.00019 Score=56.33 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+...|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999875
No 281
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.16 E-value=0.00023 Score=57.76 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
-.++|+|++|||||||++.|.|...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999998764
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.16 E-value=0.0002 Score=58.46 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+...++|+|++|||||||++.|++..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999999999998754
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.15 E-value=0.00021 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.-.++|+|+.|||||||++.|.|..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999998866
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.14 E-value=0.00026 Score=57.73 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|...
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35799999999999999999998753
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.12 E-value=0.00028 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|+|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.12 E-value=0.00024 Score=57.54 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.-.++|+|++|||||||++.|+|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999996
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00025 Score=57.47 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
-.++|+|++|||||||++.|.|...
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4789999999999999999998764
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.12 E-value=0.00029 Score=57.65 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.-.++|+|++|||||||++.|+|.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999997
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.00031 Score=57.34 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
-.++|+|++|||||||++.|.|..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999876
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.07 E-value=0.00024 Score=59.20 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+.-.++|+|++|+|||||++.|+|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3457999999999999999999864
No 291
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.06 E-value=0.00032 Score=56.82 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh---CCCc
Q 024985 17 NAERTLVLVGRTGNGKSATGNSIL---GRRA 44 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~---~~~~ 44 (259)
.....|+|+|++||||||+++.|. |...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 345689999999999999999998 6543
No 292
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.05 E-value=0.00038 Score=57.70 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|+|...
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35789999999999999999998764
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.05 E-value=0.00029 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999998764
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.04 E-value=0.00036 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh---CCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL---GRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~---~~~~ 44 (259)
+..|+|+|++|||||||++.|. |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4689999999999999999999 7654
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.04 E-value=0.0002 Score=56.36 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFKS 47 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~~ 47 (259)
-.++|+|++|||||||++.|.|. .+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~ 49 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQS 49 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence 46899999999999999999987 5433
No 296
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.03 E-value=0.00041 Score=59.09 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAFK 46 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~~ 46 (259)
-.++|+|++|||||||++.|.|-..+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 478999999999999999999976533
No 297
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.02 E-value=0.00037 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
....|+|+|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999999753
No 298
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.02 E-value=0.001 Score=55.44 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=32.9
Q ss_pred cCCCccEEEEEEeCCCC-CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 100 AKDGIHAVLLVFSVRNR-FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
.+..+|++++|+|++++ ++... ..++..+.. . ..|+++|+||+|+.++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~----~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-F----KVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-T----TCEEEEEECCGGGCCH
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-C----CCCEEEEEEcccCCCc
Confidence 56788999999999855 34432 233433333 2 2499999999998754
No 299
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.00 E-value=0.00047 Score=58.86 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|.|-..+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 357899999999999999999987653
No 300
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.00 E-value=0.00079 Score=52.85 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=38.8
Q ss_pred CcEEEEEeCCCC-CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEe
Q 024985 68 GQVVNVIDTPGL-FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFT 145 (259)
Q Consensus 68 ~~~~~liDTPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~n 145 (259)
...+++||||+. ... .....+. .+|.+|+++..+ ..+-. ...+++.+.... ..++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l~----~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~----~~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALAD----GCDLLVIPSTPD-ALALDALMLTIETLQKLG----NNRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHHH----TSSEEEEEECSS-HHHHHHHHHHHHHHHHTC----SSSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHHH----HCCEEEEEecCC-chhHHHHHHHHHHHHhcc----CCCEEEEEE
Confidence 347999999986 321 1222222 348999998876 22221 234445554421 236889999
Q ss_pred CCCCCC
Q 024985 146 GGNELE 151 (259)
Q Consensus 146 k~D~~~ 151 (259)
+.|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998553
No 301
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.97 E-value=0.00043 Score=58.92 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|.|-..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 347899999999999999999987653
No 302
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.96 E-value=0.0018 Score=50.78 Aligned_cols=99 Identities=7% Similarity=-0.020 Sum_probs=55.1
Q ss_pred hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc---ccCeEEEEEeCC-CCCCCCcccHHhhhCCCCCchHHHHH
Q 024985 98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK---VFDYMIVVFTGG-NELEDNDETLEDYLGPECPKPLKEIL 173 (259)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivV~nk~-D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (259)
..++..+|++|||+|.+++-....+.-|..|..++..+ ...|++|..||. |+... .+..++... . .+.
T Consensus 120 r~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L--~L~--- 191 (227)
T 3l82_B 120 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-L--HLN--- 191 (227)
T ss_dssp HHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-T--TGG---
T ss_pred HHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-c--CCc---
Confidence 34455669999999997432112333333344434332 234899999996 55322 222222210 0 111
Q ss_pred HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
.....+++...++.++ +|+.|-++++.+.+.
T Consensus 192 -~l~R~W~Iq~csA~TG----eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 192 -LLNHPWLVQDTEAETL----TGFLNGIEWILEEVE 222 (227)
T ss_dssp -GGCSCEEEEEEETTTC----TTHHHHHHHHTTTTT
T ss_pred -CCCCCEEEEEeECCCC----cCHHHHHHHHHHHHH
Confidence 1234566666776665 899999999876553
No 303
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.96 E-value=0.00053 Score=58.86 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
-.++|+|++|||||||++.|.|-..+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 47899999999999999999997753
No 304
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.00054 Score=58.53 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|.|-..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 347899999999999999999987653
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.95 E-value=0.00041 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
....|+|+|++||||||+.+.|.+.-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997543
No 306
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.95 E-value=0.00053 Score=58.49 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|.|-..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 347899999999999999999987643
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.95 E-value=0.0004 Score=58.16 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.....|+|+|++|||||||++.|.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456789999999999999999998754
No 308
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.94 E-value=0.0023 Score=53.14 Aligned_cols=67 Identities=12% Similarity=-0.030 Sum_probs=37.1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeE-EEEEe
Q 024985 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYM-IVVFT 145 (259)
Q Consensus 68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~-ivV~n 145 (259)
...++|||||+...... + ......+|.+|+|++.+ ..+-. -..+++.+... +.....++ -+|+|
T Consensus 156 ~yD~ViiD~p~~~~~~~--------~----~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG--------F----AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK-SKNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCGG--------G----GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT-TTTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchHH--------H----HHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-hhcCCCceEEEEEe
Confidence 34789999988543210 0 11234569999999876 22222 23445555542 21222243 48999
Q ss_pred CCC
Q 024985 146 GGN 148 (259)
Q Consensus 146 k~D 148 (259)
+.+
T Consensus 222 ~~~ 224 (307)
T 3end_A 222 RSR 224 (307)
T ss_dssp SCS
T ss_pred cCC
Confidence 998
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.94 E-value=0.00033 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~ 42 (259)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 310
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.93 E-value=0.00048 Score=58.90 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
...++|+|++|||||||+++|++...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45899999999999999999998754
No 311
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.92 E-value=0.0006 Score=58.44 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|.|-..+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 347899999999999999999987653
No 312
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.91 E-value=0.00052 Score=58.87 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
-.++|+|++|||||||++.|.|-..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 47899999999999999999998653
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.00034 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.++++|++|+|||||++.|.|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999987643
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.0002 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
..|+|+|++|||||||++.|.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.90 E-value=0.0004 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..++|+|++|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999974
No 316
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.89 E-value=0.00046 Score=58.88 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+...|+++|++|||||||+++|+|.-
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34589999999999999999998654
No 317
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.85 E-value=0.00051 Score=58.38 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
-.++|+|++|||||||++.|.|-..+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Confidence 47899999999999999999987653
No 318
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.84 E-value=0.00064 Score=51.88 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.+.++++|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 367999999999999999999864
No 319
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.00063 Score=51.15 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 024985 20 RTLVLVGRTGNGKSATGNSI 39 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l 39 (259)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.82 E-value=0.00055 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
...++++|++|||||||+++|+|...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34799999999999999999998754
No 321
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.81 E-value=0.00088 Score=52.31 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
......|+|.|.+||||||+.+.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 33457899999999999999999863
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.79 E-value=0.00066 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
....|+|+|++|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 323
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.78 E-value=0.00059 Score=58.57 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+...|+|+|++|||||||+++|++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998754
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.78 E-value=0.0012 Score=51.56 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.....|+++|++||||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999875
No 325
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.77 E-value=0.00048 Score=58.66 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++|+|++|||||||++.|.|-..+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 347899999999999999999997653
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.74 E-value=0.008 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|.|++|+|||++..++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 327
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.73 E-value=0.00092 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999975
No 328
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.73 E-value=0.00029 Score=57.52 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=29.4
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
...+|++++|+|+..+.+..... ++ + + .+|.++|+||+|+.+.
T Consensus 19 l~~~D~vl~VvDar~P~~~~~~~-l~-l---l----~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 19 LRLVNTVVEVRDARAPFATSAYG-VD-F---S----RKETIILLNKVDIADE 61 (262)
T ss_dssp HTTCSEEEEEEETTSTTTTSCTT-SC-C---T----TSEEEEEEECGGGSCH
T ss_pred HhhCCEEEEEeeCCCCCcCcChH-HH-h---c----CCCcEEEEECccCCCH
Confidence 34669999999998555443211 11 1 1 2499999999999854
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.00069 Score=53.56 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~ 42 (259)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998653
No 330
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.72 E-value=0.00064 Score=53.71 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.-.++|+|++|||||||++.|++..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998743
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.72 E-value=0.00089 Score=56.20 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...+..|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998643
No 332
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.00098 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+...|+|+|++||||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999863
No 333
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.70 E-value=0.00061 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...++|+|++|+|||||++++.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998654
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.70 E-value=0.00089 Score=55.89 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999864
No 335
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.70 E-value=0.00095 Score=57.57 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|||||||++.|.|...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 45789999999999999999998753
No 336
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.70 E-value=0.0012 Score=52.01 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..++|.|++|+|||||+..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 337
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.69 E-value=0.00096 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.....|+|.|++||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578999999999999999999864
No 338
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0065 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
++.-|+|.|+||+|||+|..++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999743
No 339
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.68 E-value=0.00092 Score=50.24 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 340
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.67 E-value=0.00073 Score=60.42 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...|+|+|++|||||||+|+|++.-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999998755
No 341
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.67 E-value=0.00082 Score=58.57 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
+...|+|+|++|||||||+++|++.-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 44579999999999999999998653
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.66 E-value=0.001 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 344
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.65 E-value=0.00065 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
....++|+|++|+|||||++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998654
No 345
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.64 E-value=0.001 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~ 40 (259)
+.-.++|+|++|||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34578999999999999999887
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.62 E-value=0.0012 Score=50.02 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.+.|+++|.+|||||||++.|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 347
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.62 E-value=0.00071 Score=57.89 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
..+++|+|++|||||||++.|.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 348
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0098 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
++.-|+|.|+||+|||+|..++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 349
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.62 E-value=0.0012 Score=54.56 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
......|+|+|++|||||||.+.|.+.-
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999987543
No 350
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.60 E-value=0.0013 Score=59.88 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++++|++|||||||++.|+|...+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 458999999999999999999987643
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.59 E-value=0.0011 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|+|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 352
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.59 E-value=0.001 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+|+|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 353
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.58 E-value=0.0014 Score=59.65 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++++|++|+|||||++.|+|...+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999987653
No 354
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.57 E-value=0.014 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.57 E-value=0.0015 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~ 40 (259)
.+..|+|+|.+||||||+.+.|.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999985
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.56 E-value=0.0015 Score=50.17 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
+..|+|+|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999985
No 357
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.56 E-value=0.001 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 358
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.55 E-value=0.0013 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
...|+++|++||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999985
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.54 E-value=0.0021 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=21.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~ 40 (259)
......|+|.|.+||||||+.+.|.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3455789999999999999999886
No 360
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.53 E-value=0.0017 Score=58.48 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS 47 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~ 47 (259)
.+.-.++|+|++|||||||++.|.|...+..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~ 75 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3456899999999999999999999765433
No 361
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.53 E-value=0.0016 Score=50.36 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.....|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44578999999999999999998754
No 362
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.53 E-value=0.0012 Score=60.12 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++++|++|||||||++.|.|...+
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 458999999999999999999987653
No 363
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.21 Score=41.87 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.++|.|++|+||||+++.|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999876
No 364
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.53 E-value=0.00092 Score=56.10 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
..+.++|+|++|||||||+|.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35688999999999999999999653
No 365
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.51 E-value=0.0016 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 024985 17 NAERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~ 40 (259)
.....|+|+|.+||||||+.+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999885
No 366
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.51 E-value=0.0017 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
..+..|+|+|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999963
No 367
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.008 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...++|.|++|+|||+|++++.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999964
No 368
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0023 Score=57.65 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAFK 46 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~ 46 (259)
+.-.++|+|++|||||||++.|.|...+.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 44678999999999999999999976543
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.49 E-value=0.0013 Score=60.07 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++++|++|||||||++.|+|...
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 45799999999999999999998764
No 370
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.015 Score=50.11 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
++.-|+|.|+||+|||+|..++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999743
No 371
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.49 E-value=0.0014 Score=59.94 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
+.-.++++|++|+|||||++.|+|...+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 3468999999999999999999987653
No 372
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.49 E-value=0.0019 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
....|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998643
No 373
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.47 E-value=0.0016 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 374
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.46 E-value=0.0018 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
...|+|+|.+||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 375
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.45 E-value=0.0017 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 376
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0021 Score=58.73 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
.+.-.++|+|++|+|||||++.|.|...+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 34568999999999999999999997754433
No 377
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.45 E-value=0.0019 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
...|+++|.+||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999986
No 378
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.013 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
++.-|+|.|+||+|||+|..++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3467999999999999999999743
No 379
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.44 E-value=0.0016 Score=59.38 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++++|++|||||||++.|+|...+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 458999999999999999999987653
No 380
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0012 Score=58.15 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
....++|+|++|||||||++.|+|-..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 346899999999999999999987653
No 381
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.39 E-value=0.33 Score=40.13 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.+++.|++|+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 456667799999999999963
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.38 E-value=0.0017 Score=49.38 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
..+|+|++|+|||||+.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999864
No 383
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.38 E-value=0.0023 Score=58.38 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
.+.-.++|+|++|+|||||++.|.|...+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G 146 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC 146 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 34568999999999999999999997654433
No 384
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0019 Score=49.89 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 385
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.38 E-value=0.0013 Score=53.92 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 024985 22 LVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 22 I~l~G~~g~GKSslin~l~~~ 42 (259)
++|+|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.34 E-value=0.0024 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHh
Q 024985 15 PSNAERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 15 ~~~~~~~I~l~G~~g~GKSslin~l~ 40 (259)
.......|+|+|.+||||||+.+.|.
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34455789999999999999999985
No 387
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.013 Score=51.45 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
++.-|+|.|+||+|||+|..++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4568999999999999999999743
No 388
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.32 E-value=0.0032 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
....|+|+|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998643
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.31 E-value=0.0025 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~ 40 (259)
....|+|+|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999885
No 390
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.31 E-value=0.0016 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
-++|+|++|+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999854
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.30 E-value=0.0021 Score=50.68 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
...|+|+|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 392
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.30 E-value=0.0025 Score=57.31 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFK 46 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~ 46 (259)
.-.++|+|++|||||||++.|+|...+.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3478999999999999999999976543
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.29 E-value=0.0028 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999743
No 394
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.0026 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999863
No 395
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0026 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
+..|+|+|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999885
No 396
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.27 E-value=0.0023 Score=50.15 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
+|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 397
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.24 E-value=0.0019 Score=57.22 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
-.++|+|++|||||||++.|.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 578999999999999999998643
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.24 E-value=0.0026 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 399
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.22 E-value=0.0019 Score=64.25 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-+|++||++|||||||++.|++-..+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccC
Confidence 468999999999999999999987653
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.22 E-value=0.0031 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+|+|.+||||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.22 E-value=0.0032 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~ 40 (259)
.+.+|+|.|++||||||+...|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999999986
No 402
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.19 E-value=0.0031 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999863
No 403
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.19 E-value=0.0027 Score=49.80 Aligned_cols=20 Identities=45% Similarity=0.803 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 404
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.17 E-value=0.0024 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...+..|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
No 405
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0033 Score=56.64 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKS 47 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~ 47 (259)
.-.++|+|+.|+|||||++.|+|...+..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 340 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTE 340 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 35789999999999999999999765433
No 406
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.16 E-value=0.0042 Score=49.04 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
..+.|+|+|+|||||+|....|...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999888643
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.15 E-value=0.0039 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
+..|+|.|.+||||||+.+.|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.14 E-value=0.0036 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.13 E-value=0.0027 Score=48.02 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
+|+|+|++||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 410
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.13 E-value=0.0035 Score=57.22 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFKS 47 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~ 47 (259)
.-.++|+|++|+|||||++.|.|...+..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~ 410 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTE 410 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 34789999999999999999999765433
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.12 E-value=0.0023 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-+++|+|++|+|||||++.|.|...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999987653
No 412
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.10 E-value=0.0035 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999853
No 413
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.09 E-value=0.0051 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
++.|+|+|+||||||||...|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHH
Confidence 4578999999999999999885
No 414
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.09 E-value=0.0024 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
-|+|+|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999854
No 415
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.07 E-value=0.004 Score=47.11 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998744
No 416
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.07 E-value=0.0036 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+|+|++|||||||.+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999853
No 417
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.06 E-value=0.003 Score=49.77 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..++++|++|+|||||++.|++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999999874
No 418
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.05 E-value=0.0039 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 419
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.04 E-value=0.0036 Score=62.26 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAFK 46 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~~ 46 (259)
...++++|++|||||||++.|+|...+.
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc
Confidence 4589999999999999999999887543
No 420
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.03 E-value=0.0027 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
..++|+|++|+|||||++.|.+.-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998643
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0042 Score=56.72 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRAFKSK 48 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~~~~~ 48 (259)
.++|+|++|+|||||++.|.|...+..+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 4899999999999999999998764443
No 422
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.03 E-value=0.0016 Score=50.94 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.02 E-value=0.0038 Score=46.69 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
+|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.02 E-value=0.0053 Score=51.67 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.+.|+|+|++|||||||...|...-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3579999999999999999997543
No 425
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.00 E-value=0.0033 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.-.++|+|++|+|||||++.|++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 347899999999999999998754
No 426
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.99 E-value=0.0028 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+|+|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.99 E-value=0.0029 Score=55.48 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-+++|+|++|+|||||++.|.|...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45899999999999999999987653
No 428
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.98 E-value=0.0033 Score=47.91 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~ 40 (259)
..|+|+|.+||||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999885
No 429
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.025 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+...|+|.|++|+|||+|..++.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 446899999999999999999974
No 430
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.006 Score=50.19 Aligned_cols=97 Identities=7% Similarity=-0.017 Sum_probs=52.1
Q ss_pred cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc---ccCeEEEEEeC-CCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985 100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK---VFDYMIVVFTG-GNELEDNDETLEDYLGPECPKPLKEILQL 175 (259)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivV~nk-~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (259)
++..+|++|||||.+++-......-+..|..++..+ ...|++|..|| -|.... .+..++... . .+. .
T Consensus 207 Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~-L--~L~----~ 277 (312)
T 3l2o_B 207 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-L--HLN----L 277 (312)
T ss_dssp HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHH-T--TGG----G
T ss_pred HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHH-c--CCc----c
Confidence 445569999999997332211222222222222111 12489999997 466432 222222210 0 011 1
Q ss_pred cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985 176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL 209 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~ 209 (259)
....+++...++.++ +|+.|-++++.+.+.
T Consensus 278 l~r~W~Iq~csA~tG----eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 278 LNHPWLVQDTEAETL----TGFLNGIEWILEEVE 307 (312)
T ss_dssp GCSCEEEEEEETTTC----TTHHHHHHHHHHHSC
T ss_pred CCCcEEEEecccCCC----cCHHHHHHHHHHHHH
Confidence 234566666666665 899999999877654
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.98 E-value=0.0051 Score=45.47 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~ 40 (259)
...+++|+.|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999975
No 432
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.96 E-value=0.0043 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~ 40 (259)
.+..|++.|++||||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
No 433
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.95 E-value=0.0045 Score=52.92 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
-.+|+|++|||||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56689999999999999986
No 434
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.94 E-value=0.0037 Score=46.97 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~ 40 (259)
..|+|.|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999985
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.94 E-value=0.0041 Score=48.72 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
+|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 436
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.94 E-value=0.0036 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+++|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999985
No 437
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.90 E-value=0.0051 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+++|.+||||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 438
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.90 E-value=0.0042 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+..|+|.|++|+|||+|+++|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 439
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.89 E-value=0.0064 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 024985 18 AERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~ 40 (259)
....|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 440
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.89 E-value=0.0033 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999985
No 441
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.88 E-value=0.0045 Score=47.31 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 442
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.87 E-value=0.0047 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 443
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.83 E-value=0.052 Score=44.56 Aligned_cols=66 Identities=17% Similarity=-0.043 Sum_probs=37.8
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHH---hcccccCe-EEEE
Q 024985 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESL---FGKKVFDY-MIVV 143 (259)
Q Consensus 69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~---~~~~~~~~-~ivV 143 (259)
..++|||||+.... .....+.. +|.+|+++..+ ..+-.. ..+++.+... ++.. .+ .-+|
T Consensus 155 yD~IiiD~pp~~~~---------~~~~~l~~----aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~--~~~~gvv 218 (298)
T 2oze_A 155 YDLIIIDTVPTPSV---------YTNNAIVA----SDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPG--LDMIGFV 218 (298)
T ss_dssp CSEEEEEECSSCSH---------HHHHHHHH----CSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTT--CEEEEEE
T ss_pred CCEEEEECCCCccH---------HHHHHHHH----CCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCC--CeEEEEE
Confidence 46899999985431 11122222 48999999887 444332 3445555442 2221 24 4589
Q ss_pred EeCCCCC
Q 024985 144 FTGGNEL 150 (259)
Q Consensus 144 ~nk~D~~ 150 (259)
+|+.|..
T Consensus 219 ~n~~~~~ 225 (298)
T 2oze_A 219 PYLVDTD 225 (298)
T ss_dssp EEESCTT
T ss_pred EEEECCC
Confidence 9999854
No 444
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.83 E-value=0.0049 Score=61.16 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-.++++|++|||||||++.|+|...+
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987653
No 445
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.80 E-value=0.0047 Score=48.24 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...++++|++|+|||||+..|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999986
No 446
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.79 E-value=0.0058 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 447
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.76 E-value=0.0056 Score=48.38 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
.|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 448
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.74 E-value=0.0061 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 024985 20 RTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~~ 42 (259)
..|+|.|++|+|||+|+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998743
No 449
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.74 E-value=0.0046 Score=49.12 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
.-.++|+|++|+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999999999864
No 450
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.73 E-value=0.008 Score=47.79 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
....|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998643
No 451
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.72 E-value=0.0035 Score=60.00 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.-.++|+|++|+|||||++.|+|...
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34799999999999999999998764
No 452
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.70 E-value=0.0063 Score=45.59 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
.-+|+|.|.+||||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999885
No 453
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.69 E-value=0.00069 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc
Q 024985 21 TLVLVGRTGNGKSATGNSILGRRA 44 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~~~ 44 (259)
.++|+|++|||||||+++|.+...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 457899999999999999987654
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.69 E-value=0.0062 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 024985 21 TLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~~ 42 (259)
+|+|+|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888643
No 455
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.67 E-value=0.037 Score=47.49 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|.|++|+|||+|..+|..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999963
No 456
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.67 E-value=0.015 Score=49.25 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.++|.|++|+||||++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 457
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.65 E-value=0.0054 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...|+|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988643
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.65 E-value=0.0064 Score=47.78 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~ 40 (259)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 459
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.63 E-value=0.007 Score=47.75 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...++|.|++|+|||+|+..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998743
No 460
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.63 E-value=0.011 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.+.-++|.|+||+|||+|..+|..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999974
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.54 E-value=0.0096 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+..|+|+|+||||||||...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46789999999999999999863
No 462
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.51 E-value=0.0082 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.50 E-value=0.0097 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999744
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.50 E-value=0.0091 Score=46.14 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+-...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.44 E-value=0.018 Score=50.00 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+++|.+||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 466
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.44 E-value=0.0098 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
++.|+|+|+||||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357899999999999999998643
No 467
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.37 E-value=0.0053 Score=50.73 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=17.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
....|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998853
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.36 E-value=0.011 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...|+|+|.+||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
No 469
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.35 E-value=0.013 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
+...++|.|++|+|||++..+|.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999998753
No 470
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.35 E-value=0.0048 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
....|+|+|.+|||||||++.|.+.-
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45689999999999999999998654
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.35 E-value=0.0096 Score=46.03 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999853
No 472
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.35 E-value=0.012 Score=48.59 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.....|+|.|++|+|||++..++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999987764
No 473
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.33 E-value=0.01 Score=43.38 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...|++.|++|+|||++..+|...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999643
No 474
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.33 E-value=0.0099 Score=59.00 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRRAF 45 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~~~ 45 (259)
.-+++++|++|+|||||++.|+|...+
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 458999999999999999999987643
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.32 E-value=0.012 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 476
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.32 E-value=0.011 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+...|+|.|++|+|||++++++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 477
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.32 E-value=0.0075 Score=49.34 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 7 DVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 7 ~~~~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
..+|.+.. -.....++|+|++|+|||||+..|++
T Consensus 19 ~ld~~lgg-l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 19 PLDYVLPN-MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp CCCEEETT-EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChheeECC-ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34454432 22345789999999999999998875
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.28 E-value=0.013 Score=45.72 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 024985 20 RTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~ 40 (259)
...+|+|+.|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467889999999999999874
No 479
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.26 E-value=0.007 Score=55.99 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 024985 19 ERTLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~ 40 (259)
.-.++|+|++|||||||++.|+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3478999999999999998764
No 480
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.26 E-value=0.011 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
+.|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999988763
No 481
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.23 E-value=0.012 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...|+|.|++|+|||+|+++|.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999999753
No 482
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.22 E-value=0.067 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
++.-|+|.|++|+|||+|.+++.+..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998543
No 483
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.21 E-value=0.0031 Score=54.64 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 024985 21 TLVLVGRTGNGKSATGNSIL 40 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~ 40 (259)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999998884
No 484
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.20 E-value=0.0088 Score=57.28 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
.-.++|+|++|+|||||++.|.|..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999644
No 485
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.18 E-value=0.01 Score=47.21 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=18.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 16 SNAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 16 ~~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
......|+|.|.+||||||+++.|..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999863
No 486
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.09 E-value=0.011 Score=47.88 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.....|+|.|..||||||+.+.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 487
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.09 E-value=0.01 Score=43.31 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...|++.|++|+|||++..+|...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999999999743
No 488
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.07 E-value=0.074 Score=44.18 Aligned_cols=49 Identities=18% Similarity=0.014 Sum_probs=31.6
Q ss_pred CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985 101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED 152 (259)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~ 152 (259)
...+|.+++|+|+..+..... .+-+.|..... ...|.++|+||+|+.++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~--~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEA--NDIQPIICITKMDLIED 132 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHH--CCCCEEEEEECCccCch
Confidence 457799999999985544433 23333322111 12388999999999865
No 489
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.99 E-value=0.016 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHH
Q 024985 17 NAERTLVLVGRTGNGKSATGNSI 39 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l 39 (259)
....+|+|+|.+|||||||+..+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34689999999999999999886
No 490
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.98 E-value=0.011 Score=46.05 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 024985 20 RTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 20 ~~I~l~G~~g~GKSslin~l~~ 41 (259)
..+++.|++|+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999888764
No 491
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.013 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
++.-|+|.||||+|||+|..++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999743
No 492
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.91 E-value=0.019 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985 17 NAERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 17 ~~~~~I~l~G~~g~GKSslin~l~~ 41 (259)
.....++|.|++|+|||++..++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999974
No 493
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.014 Score=45.08 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 024985 21 TLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 21 ~I~l~G~~g~GKSslin~l~~ 41 (259)
.++|.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999874
No 494
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.84 E-value=0.06 Score=51.51 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 024985 19 ERTLVLVGRTGNGKSATGNSI 39 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l 39 (259)
...++|+|+.|+||||+++.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998
No 495
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.78 E-value=0.017 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 18 AERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 18 ~~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
....++|.|++|+|||||++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 496
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.77 E-value=0.014 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...++|+|++|+|||||+++|.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999998753
No 497
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.76 E-value=0.015 Score=49.38 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGRR 43 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~~ 43 (259)
...+.|+|++|+|||||++.|++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998654
No 498
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.74 E-value=0.019 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
...++|.|++|+|||+|+.+|..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 499
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.71 E-value=0.053 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILGR 42 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~~ 42 (259)
...++|+|++|+|||+++..+...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.71 E-value=0.021 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 024985 19 ERTLVLVGRTGNGKSATGNSILG 41 (259)
Q Consensus 19 ~~~I~l~G~~g~GKSslin~l~~ 41 (259)
+..|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
Done!