BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024986
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
pdb|1E2E|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate,A Magnesium-Ion And
Alf3
pdb|1E2F|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
pdb|1E2G|A Chain A, Human Thymidylate Kinase Complexed With Adp, Tdp And A
Magnesium-Ion
pdb|1E2Q|A Chain A, Human Thymidylate Kinase Complexed With Tp5a And A
Magnesium-Ion
pdb|1E99|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Adp
pdb|1E9A|A Chain A, Human Thymidylate Kinase Complexed With The Bisubstrate
Inhibitor Aztp5a
pdb|1E9B|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Appnp
pdb|1NMX|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Adp
pdb|1NMZ|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Nh2tmp
And Appnhp
pdb|1NN0|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Adp
pdb|1NN1|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Appnhp
pdb|1NN3|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Adp
pdb|1NN5|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Appnhp
Length = 215
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
RGAL+VLEG+DR GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S ++
Sbjct: 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVAF+ AK ++WCK P++GL
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
PD VL+L + AA + FQ + +C+ Q+++D++ WK++DA +SI
Sbjct: 128 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 187
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
E V + ++ + D + + KP LW
Sbjct: 188 EAVHEDIRVLSEDAIATATE-KPLGELW 214
>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Appnhp
Length = 209
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
RGAL+VLEG+DR GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S ++
Sbjct: 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVAF+ AK ++WCK P++GL
Sbjct: 62 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 121
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
PD VL+L + AA + FQ + +C+ Q+++D++ WK++DA +SI
Sbjct: 122 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 181
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
E V + ++ + D + + KP LW
Sbjct: 182 EAVHEDIRVLSEDAIATATE-KPLGELW 208
>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl
Phosphonate Monophosphate And Adp
Length = 232
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
RGAL+VLEG+DR GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S ++
Sbjct: 25 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 84
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVAF+ AK ++WCK P++GL
Sbjct: 85 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 144
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
PD VL+L + AA + FQ + +C+ Q+++D++ WK++DA +SI
Sbjct: 145 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 204
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
E V + ++ + D + + KP LW
Sbjct: 205 EAVHEDIRVLSEDAIRTATE-KPLGELW 231
>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
And Adp
Length = 215
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
RGAL+VLEG+DR GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S ++
Sbjct: 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVAF+ AK ++WCK P++GL
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
PD VL+L + AA + FQ + +C+ Q+++D++ WK++DA + I
Sbjct: 128 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKRI 187
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
E V ++++ + D + + KP LW
Sbjct: 188 EAVHEEIRVLSEDAIRTATE-KPLGELW 214
>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Appnp
pdb|1E9D|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Aztmp And Adp
pdb|1E9E|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Dtmp And Adp
Length = 215
Score = 183 bits (464), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 138/208 (66%), Gaps = 5/208 (2%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
RGAL+VLEG+DR GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S ++
Sbjct: 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVA++ AK ++WCK P++GL
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAYTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCY-QMLRDSS--WKIIDACQSI 229
PD VL+L + AA + FQ + +C+ Q+++D++ WK++DA +SI
Sbjct: 128 PKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSI 187
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
E V + ++ + D + + KP LW
Sbjct: 188 EAVHEDIRVLSEDAIATATE-KPLKELW 214
>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp
Length = 217
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 137/210 (65%), Gaps = 7/210 (3%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
RGAL+VLEG+D GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S ++
Sbjct: 8 RGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGL 172
DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVAF+ AK ++WCK P++GL
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 127
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLE--FQRKVAQCY-QMLRDSS--WKIIDACQ 227
PD VL+L + AA + FQ + +C+ Q+++D++ WK++DA +
Sbjct: 128 PKPDLVLFLQLQLADAAKRGRARGELERYENGAFQERALRCFHQLMKDTTLNWKMVDASK 187
Query: 228 SIEDVEKQLKEIVLDQVTACKKGKPFSLLW 257
SIE V + ++ + D + + KP LW
Sbjct: 188 SIEAVHEDIRVLSEDAIATATE-KPLGELW 216
>pdb|2WWF|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWF|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWF|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWG|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWG|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWG|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWH|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWH|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWH|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWI|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
pdb|2WWI|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
pdb|2WWI|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
Length = 212
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 122/208 (58%), Gaps = 7/208 (3%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
+G +V EGLDR GK++Q L+ YL+ V+ FP+R T +GQ+IS YL ++ +
Sbjct: 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMS 68
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGL 172
+ TIHLLFSANRWE + +++ L G ++ DRY+YSGVA+SS A ++ WC P+ GL
Sbjct: 69 NETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGL 128
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML-RDSSWKIIDACQSIED 231
+ PD V YL++PP A +E Q+K+ + Y+ + W IDA + IED
Sbjct: 129 IKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYETYKHFAHEDYWINIDATRKIED 188
Query: 232 VEKQLKEIVLDQVTACK-KGKPFSLLWS 258
+ ++ +VT K + + F+ LWS
Sbjct: 189 IHND----IVKEVTKIKVEPEEFNFLWS 212
>pdb|2V54|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Tdp
pdb|2V54|B Chain B, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Tdp
pdb|2W0S|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Brivudin-5'-Monophosphate
pdb|2W0S|B Chain B, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Brivudin-5'-Monophosphate
Length = 204
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 125/209 (59%), Gaps = 11/209 (5%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
SRGAL+V EGLD+ GKT+QC ++ + ++++ FP R+T G+MI YL+ +
Sbjct: 2 SRGALIVFEGLDKSGKTTQCMNIMESIPA--NTIKYLNFPQRSTVTGKMIDDYLTRKKTY 59
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
+DH ++LLF ANRWE S ++ +L+ G TLIVDRY++SGVA+++AKG + K+ E GL
Sbjct: 60 NDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGL 119
Query: 173 LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
PD V++L+ ++ + FQ+KV Q Y+ + D W+II + +
Sbjct: 120 PKPDLVIFLESGSKEI--NRNVGEEIYEDVTFQQKVLQEYKKMIEEGDIHWQII-SSEFE 176
Query: 230 EDVEKQL-KEIVLDQVTACKKGKPFSLLW 257
EDV+K+L K IV++ + P LW
Sbjct: 177 EDVKKELIKNIVIEAIHTVT--GPVGQLW 203
>pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
pdb|2TMK|B Chain B, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
pdb|1TMK|A Chain A, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|1TMK|B Chain B, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|B Chain B, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|C Chain C, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|D Chain D, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|E Chain E, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|F Chain F, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|G Chain G, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|H Chain H, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
Length = 216
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 115/193 (59%), Gaps = 9/193 (4%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-H 111
RG L+++EGLDR GKT+QC+ L L+ + +L +FP+R+T +G +I+ YL++ S
Sbjct: 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ---PNCKLLKFPERSTRIGGLINEYLTDDSFQ 59
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK---GIDIEWCKAP 168
L D IHLLFSANRWE ++ L G +++DRY YSGVA+S+AK G+D++WC P
Sbjct: 60 LSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQP 119
Query: 169 EIGLLAPDSVLYLDIPP-EKAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSSWKIIDACQ 227
++GLL PD L+L + A ++FQ KV Q + L D + D
Sbjct: 120 DVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESI 179
Query: 228 SIEDV-EKQLKEI 239
+I DV K ++E+
Sbjct: 180 TIVDVTNKGIQEV 192
>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
Length = 195
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
L+ EG+D GKT+Q +L YL+ G+ V L+R P T VG+++ L + LD+ T
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERT 59
Query: 117 IHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKA-PEI 170
LLF A+R ++E K LK +I+DR+ S +A+ KG+D+E+ K E
Sbjct: 60 ELLLFEASRS---KLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEF 116
Query: 171 GL--LAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML--RDSSWKIIDAC 226
+ PD L LDIP + A + EF KV + + L + + +IDA
Sbjct: 117 ATRGVKPDITLLLDIPVD-IALRRLKEKNRFENKEFLEKVRKGFLELAKEEENVVVIDAS 175
Query: 227 QSIEDVEKQL 236
E+V K++
Sbjct: 176 GEEEEVFKEI 185
>pdb|2PLR|A Chain A, Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus
Tokodaii Strain7
pdb|2PLR|B Chain B, Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus
Tokodaii Strain7
Length = 213
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL--WRFPDRTTSVGQMISAYLSNQSH 111
+G L+ EG+D GK+SQ + L ++E L V L W D + + + +
Sbjct: 3 KGVLIAFEGIDGSGKSSQATLLKDWIE-LKRDVYLTEWNSSDWIHDIIKE-AKKKDLLTP 60
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIG 171
L IH ++R+E+ + LK+G +I DRY Y+ A S +G+DI+W K
Sbjct: 61 LTFSLIHATDFSDRYERYIL--PXLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSF 118
Query: 172 LLAPDSVLYLDIPP-----------------EKAAXXXXXXXXXXXHLEFQRKVAQCY-Q 213
+ PD Y+ + P E A L++Q + + Y +
Sbjct: 119 AIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDK 178
Query: 214 MLRDSSWKIIDACQSIEDVEKQLKEIV 240
+++D ++ +ID ++ ++++ Q+++ V
Sbjct: 179 LVKDENFIVIDGTKTPKEIQIQIRKFV 205
>pdb|3V9P|A Chain A, Crystal Structure Of Thymidylate Kinase From Burkholderia
Thailandensis
pdb|3V9P|B Chain B, Crystal Structure Of Thymidylate Kinase From Burkholderia
Thailandensis
Length = 227
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 53 SRGALVVLEGLDRCGKTSQ----CSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN 108
+RG + EG+D GKT+ C RL L G V + R P T +G+ + L N
Sbjct: 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLN 81
Query: 109 QSHLDDHTIHLLFSANRWEKRSM-MEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCK 166
Q +D T LL A R E ++ +E L G ++ DR++ + A+ +G+ + +
Sbjct: 82 QP-MDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLE 140
Query: 167 APE---IGLLAPDSVLYLDIPPE-----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDS 218
A E G PD + D+PP+ + A F R A+ + +++
Sbjct: 141 ALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEA 200
Query: 219 SWK--IIDACQSIEDVEKQLKEIV 240
+ I+D+ + I + KQL+ ++
Sbjct: 201 PHRFVIVDSSEPIAQIRKQLEGVL 224
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
+ EG+D GK++Q L YLE G V L R P T G+ I L +
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLEEEVTPKAE 60
Query: 117 IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSS-----AKGIDIEWCKAPEIG 171
+ LF A+R + ++ L G +++DRY+ S VA+ K I E G
Sbjct: 61 L-FLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDG 119
Query: 172 LLAPDSVLYLDIPPEKAAXXXXXXXXXXXHLEFQRKVAQCYQML-RDSSWKII--DACQS 228
L+ PD Y+D+ E A EF +V + Y +L R+ +I+ D +S
Sbjct: 120 LI-PDLTFYIDVDVETALKRKGELNRFEKR-EFLERVREGYLVLAREHPERIVVLDGKRS 177
Query: 229 IEDVEKQL 236
IE++ + +
Sbjct: 178 IEEIHRDV 185
>pdb|4TMK|A Chain A, Complex Of E. Coli Thymidylate Kinase With The Bisubstrate
Inhibitor Tp5a
pdb|5TMP|A Chain A, Complex Of E. Coli Thymidylate Kinase With The Bisubstrate
Inhibitor Aztp5a
Length = 213
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 16/203 (7%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHL 112
R +V+EGL+ GKT+ + ++ LE LG + R P T ++ S L +S
Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 61
Query: 113 D----DHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGID---IE 163
D D L+F A R + ++++ L GT +I DR+ S A+ +GID +
Sbjct: 62 DEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLA 121
Query: 164 WCKAPEIGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQML--RD 217
+ +G PD LYLD+ PE +A +F + Y L +D
Sbjct: 122 TLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD 181
Query: 218 SSWKIIDACQSIEDVEKQLKEIV 240
S IDA Q +E V ++ V
Sbjct: 182 KSIHTIDATQPLEAVMDAIRTTV 204
>pdb|3LV8|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Thymidylate
Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str.
N16961 In Complex With Tmp, Thymidine-5'-Diphosphate And
Adp
pdb|3N2I|A Chain A, 2.25 Angstrom Resolution Crystal Structure Of A
Thymidylate Kinase (tmk) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Thymidine
pdb|3N2I|B Chain B, 2.25 Angstrom Resolution Crystal Structure Of A
Thymidylate Kinase (tmk) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Thymidine
Length = 236
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLE--GLGHSVELWRFPDRTTSVGQMISAYLSNQ---SH 111
+V+EGL+ GK++ ++ L+ G+ H + R P T + + + A + +
Sbjct: 29 FIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPGGTL-LAEKLRALVKEEHPGEE 86
Query: 112 LDDHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDI-----EWC 165
L D T LL A R + ++++ L G ++ DR+ S A+ G I +
Sbjct: 87 LQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGG-GRQIAPSTMQSL 145
Query: 166 KAPEIGLLAPDSVLYLDIPP----EKAAXXXXXXXXXXXHLEFQRKVAQCYQML--RDSS 219
K +G PD LYLDI P E+A + F + + Y L D S
Sbjct: 146 KQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELANSDDS 205
Query: 220 WKIIDACQSIEDVEKQLKEIVLD 242
+IDA QSIE V ++ + D
Sbjct: 206 VVMIDAAQSIEQVTADIRRALQD 228
>pdb|1G3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GSI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GTV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1GTV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1MRN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Bisubstrate Inhibitor
(Tp5a)
pdb|1MRS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With 5-Ch2oh Deoxyuridine
Monophosphate
pdb|1N5I|A Chain A, Crystal Structure Of Inactive Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp) At Ph 4.6 (Resolution 1.85 A)
pdb|1N5J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine Diphosphate
(Tdp) And Thymidine Triphosphate (Ttp) At Ph 5.4 (1.85 A
Resolution)
pdb|1N5K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5K|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5L|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1N5L|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1W2G|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2G|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2H|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
pdb|1W2H|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
Length = 214
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD--- 113
L+ +EG+D GK + +L G SV FP SV I+A + H D
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61
Query: 114 -DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCK 166
+ + LF+ +R ++ + +I+DRY S A+S+A+ G W +
Sbjct: 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121
Query: 167 APE---IGLLAPDSVLYLDIPPEKA 188
E +GL PD + L + E A
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELA 146
>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|C Chain C, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|D Chain D, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 211
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
G V LEG + GK++ L L G V+L R P T + + I L S++
Sbjct: 2 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 60
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
D + L+F+A ++ L G ++ DR++ + A+ +G+ A E
Sbjct: 61 AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 120
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
G L PD L D+P E +AA F V Q Y + R +
Sbjct: 121 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 179
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
++++DA + +V+ L ++
Sbjct: 180 YQVLDAGLPLAEVQAGLDRLL 200
>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4EDH|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4ESH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With
Deoxythymidine.
pdb|4GMD|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|C Chain C, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|D Chain D, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
Length = 213
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
G V LEG + GK++ L L G V+L R P T + + I L S++
Sbjct: 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 64
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
D + L+F+A ++ L G ++ DR++ + A+ +G+ A E
Sbjct: 65 AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 124
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
G L PD L D+P E +AA F V Q Y + R +
Sbjct: 125 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 183
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
++++DA + +V+ L ++
Sbjct: 184 YQVLDAGLPLAEVQAGLDRLL 204
>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWO|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 220
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
G V LEG + GK++ L L G V+L R P T + + I L S++
Sbjct: 11 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 69
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
D + L+F+A ++ L G ++ DR++ + A+ +G+ A E
Sbjct: 70 AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 129
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
G L PD L D+P E +AA F V Q Y + R +
Sbjct: 130 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 188
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
++++DA + +V+ L ++
Sbjct: 189 YQVLDAGLPLAEVQAGLDRLL 209
>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWK|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 232
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
G V LEG + GK++ L L G V+L R P T + + I L S++
Sbjct: 23 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPM 81
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
D + L+F+A ++ L G ++ DR++ + A+ +G+ A E
Sbjct: 82 AADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 141
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
G L PD L D+P E +AA F V Q Y + R +
Sbjct: 142 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 200
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
++++DA + +V+ L ++
Sbjct: 201 YQVLDAGLPLAEVQAGLDRLL 221
>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate.
pdb|4E5U|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate
Length = 213
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 17/201 (8%)
Query: 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL---SNQSH 111
G V LEG + GK++ L L G V+L R P T + + I L S++
Sbjct: 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPX 64
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
D + L F+A ++ L G ++ DR++ + A+ +G+ A E
Sbjct: 65 AADTELLLXFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES 124
Query: 170 --IGLLAPDSVLYLDIPPE----KAAXXXXXXXXXXXHLEFQRKVAQCYQMLRDSS---- 219
G L PD L D+P E +AA F V Q Y + R +
Sbjct: 125 FVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTY-LQRAAQAPER 183
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
++++DA + +V+ L ++
Sbjct: 184 YQVLDAGLPLAEVQAGLDRLL 204
>pdb|3LD9|A Chain A, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
pdb|3LD9|B Chain B, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
pdb|3LD9|C Chain C, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
pdb|3LD9|D Chain D, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
Length = 223
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYL-EGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
+ EG+D GKT+Q L YL E G ++V L R P T + + + L LD
Sbjct: 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTL-LNESVRNLLFKAQGLDS 81
Query: 115 HTIHLLFSANRWE------KRSMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGID 161
+ L F A R E K S+M+ K+ +I DR+ S +A+ +GID
Sbjct: 82 LSELLFFIAMRREHFVKIIKPSLMQKKI-----VICDRFIDSTIAYQGYGQGID 130
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQ----MISAYLSNQSH 111
L+V+ GL GKT +L YL +G P R +VGQ M+ Y S +
Sbjct: 40 TLIVMVGLPARGKTYISKKLTRYLNFIG-------VPTREFNVGQYRRDMVKTYKSFEFF 92
Query: 112 LDDH 115
L D+
Sbjct: 93 LPDN 96
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQ----MISAYLSNQSH 111
L+V+ GL GKT +L YL +G P R +VGQ M+ Y S +
Sbjct: 40 TLIVMVGLPARGKTYISKKLTRYLNFIG-------VPTREFNVGQYRRDMVKTYKSFEFF 92
Query: 112 LDDH 115
L D+
Sbjct: 93 LPDN 96
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQ----MISAYLSNQSH 111
L+V+ GL GKT +L YL +G P R +VGQ M+ Y S +
Sbjct: 39 TLIVMVGLPARGKTYISKKLTRYLNFIG-------VPTREFNVGQYRRDMVKTYKSFEFF 91
Query: 112 LDDH 115
L D+
Sbjct: 92 LPDN 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,930,220
Number of Sequences: 62578
Number of extensions: 245835
Number of successful extensions: 639
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 34
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)