Query 024986
Match_columns 259
No_of_seqs 152 out of 1306
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02924 thymidylate kinase 100.0 4.1E-44 8.9E-49 307.5 26.0 209 51-259 12-220 (220)
2 COG0125 Tmk Thymidylate kinase 100.0 1.5E-39 3.3E-44 276.0 23.5 192 54-246 2-207 (208)
3 KOG3327 Thymidylate kinase/ade 100.0 3.5E-38 7.5E-43 257.0 16.8 204 52-256 2-208 (208)
4 PRK13976 thymidylate kinase; P 100.0 1.1E-35 2.3E-40 253.6 24.2 190 56-248 1-207 (209)
5 PRK13973 thymidylate kinase; P 100.0 5.8E-35 1.3E-39 249.9 24.6 191 54-245 2-209 (213)
6 PRK07933 thymidylate kinase; V 100.0 2.1E-35 4.5E-40 252.7 20.5 185 56-240 1-211 (213)
7 PF02223 Thymidylate_kin: Thym 100.0 1.1E-33 2.4E-38 236.5 18.6 176 60-236 1-186 (186)
8 PRK13974 thymidylate kinase; P 100.0 9.6E-33 2.1E-37 236.0 24.5 193 54-247 2-211 (212)
9 PRK00698 tmk thymidylate kinas 100.0 4.2E-31 9.2E-36 223.3 23.1 190 54-244 2-204 (205)
10 TIGR00041 DTMP_kinase thymidyl 100.0 4.4E-30 9.6E-35 215.9 21.7 182 54-236 2-195 (195)
11 PRK13975 thymidylate kinase; P 100.0 1.8E-28 3.9E-33 206.3 22.6 184 55-246 2-194 (196)
12 cd01672 TMPK Thymidine monopho 100.0 8.8E-28 1.9E-32 201.2 23.7 185 56-241 1-199 (200)
13 cd02030 NDUO42 NADH:Ubiquinone 99.9 1.5E-25 3.2E-30 192.6 16.6 180 57-238 1-217 (219)
14 cd01673 dNK Deoxyribonucleosid 99.9 9.2E-22 2E-26 165.2 11.8 167 57-230 1-190 (193)
15 PHA03132 thymidine kinase; Pro 99.8 1.4E-19 3.1E-24 172.8 16.9 160 54-216 256-446 (580)
16 TIGR01360 aden_kin_iso1 adenyl 99.8 7.3E-17 1.6E-21 134.2 18.9 168 54-242 2-187 (188)
17 PRK14532 adenylate kinase; Pro 99.7 3E-16 6.6E-21 131.2 18.9 167 57-242 2-187 (188)
18 COG1428 Deoxynucleoside kinase 99.7 1.4E-16 3.1E-21 133.7 16.1 179 54-245 3-211 (216)
19 TIGR01359 UMP_CMP_kin_fam UMP- 99.7 2.6E-16 5.6E-21 130.8 16.0 165 57-240 1-182 (183)
20 PRK13808 adenylate kinase; Pro 99.7 5.2E-16 1.1E-20 140.1 17.1 175 57-248 2-199 (333)
21 PLN02200 adenylate kinase fami 99.7 5.7E-16 1.2E-20 134.4 16.1 170 52-245 40-227 (234)
22 PRK14527 adenylate kinase; Pro 99.7 1.4E-15 2.9E-20 127.8 17.6 170 52-240 3-190 (191)
23 KOG3877 NADH:ubiquinone oxidor 99.7 1.1E-15 2.3E-20 132.5 16.2 190 54-245 70-300 (393)
24 PRK14531 adenylate kinase; Pro 99.7 2.1E-15 4.5E-20 126.0 17.2 167 56-240 3-182 (183)
25 PLN02842 nucleotide kinase 99.7 1.2E-15 2.7E-20 144.0 16.4 170 60-248 2-208 (505)
26 PRK02496 adk adenylate kinase; 99.7 2.2E-15 4.8E-20 125.6 15.7 166 56-240 2-182 (184)
27 KOG3079 Uridylate kinase/adeny 99.7 1.4E-15 3E-20 124.8 13.7 170 52-242 5-193 (195)
28 PRK06762 hypothetical protein; 99.6 1.6E-14 3.5E-19 118.3 17.4 159 55-240 2-162 (166)
29 TIGR01351 adk adenylate kinase 99.6 8.3E-15 1.8E-19 124.9 15.5 165 58-240 2-209 (210)
30 PRK14529 adenylate kinase; Pro 99.6 4.1E-14 8.9E-19 121.6 18.7 167 57-240 2-222 (223)
31 PLN02674 adenylate kinase 99.6 1.3E-14 2.8E-19 126.2 15.7 171 53-240 29-243 (244)
32 PRK14528 adenylate kinase; Pro 99.6 6.6E-14 1.4E-18 117.3 16.0 165 56-239 2-185 (186)
33 TIGR03574 selen_PSTK L-seryl-t 99.6 9.4E-14 2E-18 121.4 17.5 162 57-242 1-169 (249)
34 PLN02459 probable adenylate ki 99.6 7.1E-14 1.5E-18 122.3 16.5 172 54-246 28-255 (261)
35 PRK14530 adenylate kinase; Pro 99.6 3.1E-13 6.7E-18 115.6 19.2 161 54-242 2-213 (215)
36 PRK00279 adk adenylate kinase; 99.6 1.3E-13 2.7E-18 118.0 16.6 170 56-242 1-214 (215)
37 PRK08233 hypothetical protein; 99.5 3.7E-13 7.9E-18 111.3 15.4 159 54-242 2-177 (182)
38 PRK14738 gmk guanylate kinase; 99.5 2.5E-13 5.4E-18 115.6 13.5 171 52-243 10-195 (206)
39 PRK14526 adenylate kinase; Pro 99.5 7E-13 1.5E-17 113.3 16.0 164 57-242 2-209 (211)
40 COG0529 CysC Adenylylsulfate k 99.5 1.3E-13 2.8E-18 112.7 10.9 165 51-242 19-191 (197)
41 PRK05541 adenylylsulfate kinas 99.5 4.8E-13 1E-17 110.7 14.5 164 52-243 4-173 (176)
42 cd01428 ADK Adenylate kinase ( 99.5 2.5E-13 5.4E-18 113.6 11.8 117 58-196 2-126 (194)
43 PTZ00088 adenylate kinase 1; P 99.5 2.4E-12 5.3E-17 111.3 16.5 120 54-195 5-130 (229)
44 COG0563 Adk Adenylate kinase a 99.5 3.5E-12 7.7E-17 106.2 15.8 168 56-240 1-177 (178)
45 COG4088 Predicted nucleotide k 99.4 5.3E-12 1.2E-16 105.8 14.3 164 56-241 2-172 (261)
46 PRK03839 putative kinase; Prov 99.4 5E-12 1.1E-16 105.0 13.6 148 56-243 1-154 (180)
47 PRK04040 adenylate kinase; Pro 99.4 3.4E-11 7.4E-16 101.2 18.1 168 55-240 2-187 (188)
48 PRK10078 ribose 1,5-bisphospho 99.4 4.8E-12 1E-16 105.9 12.0 169 55-247 2-181 (186)
49 PRK03731 aroL shikimate kinase 99.4 1.1E-11 2.4E-16 102.0 13.7 64 175-241 94-169 (171)
50 COG1936 Predicted nucleotide k 99.4 4.5E-12 9.7E-17 103.5 10.8 145 56-242 1-156 (180)
51 COG1102 Cmk Cytidylate kinase 99.4 3.2E-11 7E-16 97.4 15.4 157 56-245 1-175 (179)
52 TIGR01313 therm_gnt_kin carboh 99.4 6.7E-11 1.5E-15 96.5 17.1 157 58-241 1-162 (163)
53 PRK01184 hypothetical protein; 99.3 2.1E-10 4.5E-15 95.5 18.8 166 56-246 2-182 (184)
54 PRK13946 shikimate kinase; Pro 99.3 1.7E-10 3.7E-15 96.4 18.1 166 53-247 8-181 (184)
55 cd00227 CPT Chloramphenicol (C 99.3 9.2E-11 2E-15 97.1 16.0 162 54-240 1-174 (175)
56 COG3265 GntK Gluconate kinase 99.3 5.6E-11 1.2E-15 94.6 13.9 150 61-242 1-159 (161)
57 TIGR02322 phosphon_PhnN phosph 99.3 7.1E-11 1.5E-15 97.8 15.1 167 55-241 1-177 (179)
58 TIGR00455 apsK adenylylsulfate 99.3 7.4E-11 1.6E-15 98.3 14.0 166 51-239 14-183 (184)
59 PF08433 KTI12: Chromatin asso 99.3 8E-11 1.7E-15 104.2 14.6 157 56-236 2-169 (270)
60 PRK00131 aroK shikimate kinase 99.3 4.2E-10 9E-15 92.1 16.7 160 52-243 1-172 (175)
61 COG0194 Gmk Guanylate kinase [ 99.3 2.3E-11 5.1E-16 100.6 9.0 167 54-243 3-183 (191)
62 PRK13947 shikimate kinase; Pro 99.3 4.3E-10 9.4E-15 92.3 16.6 155 57-239 3-164 (171)
63 PRK04182 cytidylate kinase; Pr 99.3 5.5E-10 1.2E-14 92.0 17.3 71 175-245 92-176 (180)
64 PHA02530 pseT polynucleotide k 99.3 2.4E-10 5.1E-15 102.3 16.0 153 55-231 2-171 (300)
65 PF01583 APS_kinase: Adenylyls 99.3 1.5E-10 3.2E-15 94.2 13.1 115 54-194 1-119 (156)
66 PRK00081 coaE dephospho-CoA ki 99.3 3.8E-10 8.3E-15 95.2 16.0 165 56-242 3-193 (194)
67 PRK06217 hypothetical protein; 99.2 1.8E-10 4E-15 96.0 13.7 146 56-242 2-179 (183)
68 COG0703 AroK Shikimate kinase 99.2 3.7E-10 8E-15 92.9 14.3 159 56-244 3-170 (172)
69 PRK13948 shikimate kinase; Pro 99.2 8.3E-10 1.8E-14 92.3 16.6 160 52-244 7-177 (182)
70 PRK05057 aroK shikimate kinase 99.2 7.2E-10 1.6E-14 91.8 15.5 160 53-242 2-171 (172)
71 PRK09825 idnK D-gluconate kina 99.2 1.6E-09 3.4E-14 90.1 17.5 168 54-246 2-172 (176)
72 PRK00889 adenylylsulfate kinas 99.2 4.8E-10 1E-14 92.6 13.6 164 53-242 2-170 (175)
73 PF00406 ADK: Adenylate kinase 99.2 6.8E-11 1.5E-15 95.5 7.9 117 60-194 1-122 (151)
74 PRK03846 adenylylsulfate kinas 99.2 3.9E-10 8.4E-15 95.3 12.6 165 51-242 20-192 (198)
75 PRK08356 hypothetical protein; 99.2 2.6E-09 5.5E-14 90.0 17.3 67 176-243 116-193 (195)
76 PRK14737 gmk guanylate kinase; 99.2 3.3E-10 7.2E-15 95.0 11.4 169 53-242 2-184 (186)
77 KOG4235 Mitochondrial thymidin 99.2 3.2E-10 6.9E-15 94.1 10.7 180 57-247 24-243 (244)
78 PRK00300 gmk guanylate kinase; 99.2 6.4E-10 1.4E-14 94.0 12.8 172 51-243 1-185 (205)
79 TIGR03707 PPK2_P_aer polyphosp 99.2 1.1E-09 2.3E-14 94.5 14.3 166 53-246 29-223 (230)
80 PHA03136 thymidine kinase; Pro 99.1 2.6E-09 5.6E-14 97.6 17.0 160 54-215 35-234 (378)
81 PRK13949 shikimate kinase; Pro 99.1 3.1E-09 6.8E-14 87.7 15.9 155 57-239 3-168 (169)
82 TIGR02173 cyt_kin_arch cytidyl 99.1 3.6E-09 7.9E-14 86.4 16.1 152 56-240 1-170 (171)
83 TIGR03708 poly_P_AMP_trns poly 99.1 9.4E-10 2E-14 104.3 14.0 167 52-245 37-235 (493)
84 TIGR03263 guanyl_kin guanylate 99.1 4E-10 8.8E-15 93.2 10.2 166 55-241 1-179 (180)
85 TIGR03575 selen_PSTK_euk L-ser 99.1 1.3E-09 2.8E-14 99.2 14.0 178 57-244 1-229 (340)
86 PRK00625 shikimate kinase; Pro 99.1 8.7E-09 1.9E-13 85.4 17.8 156 56-240 1-171 (173)
87 PF13671 AAA_33: AAA domain; P 99.1 7.1E-10 1.5E-14 88.0 10.6 114 57-196 1-119 (143)
88 PF01712 dNK: Deoxynucleoside 99.1 8.1E-11 1.8E-15 94.9 4.7 119 119-241 3-143 (146)
89 PRK05506 bifunctional sulfate 99.1 2.1E-09 4.6E-14 105.8 15.5 166 52-242 457-628 (632)
90 PRK11545 gntK gluconate kinase 99.1 3.1E-09 6.7E-14 87.2 13.8 70 172-241 88-159 (163)
91 PRK14731 coaE dephospho-CoA ki 99.1 2.7E-09 5.8E-14 91.0 13.7 70 174-244 133-204 (208)
92 PRK14732 coaE dephospho-CoA ki 99.1 9.6E-09 2.1E-13 86.9 16.6 72 174-246 121-194 (196)
93 COG3709 Uncharacterized compon 99.1 5.7E-10 1.2E-14 90.2 8.4 165 53-243 3-183 (192)
94 PRK14734 coaE dephospho-CoA ki 99.1 1.2E-08 2.6E-13 86.5 17.0 72 173-245 124-197 (200)
95 KOG3354 Gluconate kinase [Carb 99.1 8.1E-09 1.8E-13 83.0 14.7 160 56-242 13-188 (191)
96 PRK05537 bifunctional sulfate 99.1 3.4E-09 7.4E-14 102.8 15.1 168 53-242 390-562 (568)
97 PRK14730 coaE dephospho-CoA ki 99.1 9.3E-09 2E-13 86.9 15.8 164 56-240 2-192 (195)
98 TIGR03709 PPK2_rel_1 polyphosp 99.0 6.8E-09 1.5E-13 91.2 14.7 163 53-242 54-248 (264)
99 PF13521 AAA_28: AAA domain; P 99.0 3.7E-09 8.1E-14 86.3 11.9 157 58-231 2-162 (163)
100 smart00072 GuKc Guanylate kina 99.0 4E-09 8.7E-14 88.0 11.8 166 55-242 2-182 (184)
101 PRK08154 anaerobic benzoate ca 99.0 1.9E-08 4E-13 90.9 16.8 162 50-244 128-303 (309)
102 PLN02422 dephospho-CoA kinase 99.0 1.9E-08 4.2E-13 87.0 15.8 70 174-244 125-196 (232)
103 COG2019 AdkA Archaeal adenylat 99.0 8.4E-08 1.8E-12 78.2 17.8 163 55-242 4-188 (189)
104 PLN02199 shikimate kinase 99.0 8.8E-08 1.9E-12 85.3 19.5 161 53-246 100-292 (303)
105 PRK14733 coaE dephospho-CoA ki 99.0 7.4E-08 1.6E-12 81.9 18.2 66 174-243 128-199 (204)
106 PTZ00451 dephospho-CoA kinase; 99.0 4.6E-08 9.9E-13 85.4 16.8 67 174-242 136-207 (244)
107 PRK13477 bifunctional pantoate 99.0 4.4E-08 9.5E-13 93.6 18.0 29 52-80 281-309 (512)
108 COG0283 Cmk Cytidylate kinase 99.0 1.4E-07 3.1E-12 79.9 19.0 70 172-243 135-220 (222)
109 cd02021 GntK Gluconate kinase 99.0 2E-08 4.2E-13 80.7 13.2 146 57-224 1-149 (150)
110 cd02027 APSK Adenosine 5'-phos 99.0 2.4E-08 5.1E-13 80.7 13.6 116 57-194 1-116 (149)
111 PF03976 PPK2: Polyphosphate k 99.0 4.7E-10 1E-14 96.8 3.7 165 54-244 30-225 (228)
112 COG0237 CoaE Dephospho-CoA kin 98.9 7.4E-09 1.6E-13 87.8 10.3 72 175-248 124-198 (201)
113 PF07931 CPT: Chloramphenicol 98.9 1.4E-08 3.1E-13 84.1 11.6 154 55-240 1-173 (174)
114 KOG0635 Adenosine 5'-phosphosu 98.9 8.8E-09 1.9E-13 82.5 9.1 164 53-242 29-200 (207)
115 PRK05480 uridine/cytidine kina 98.9 6.6E-08 1.4E-12 82.1 14.7 30 51-80 2-31 (209)
116 TIGR00152 dephospho-CoA kinase 98.9 2.2E-08 4.7E-13 83.8 11.4 62 174-237 123-187 (188)
117 PRK14021 bifunctional shikimat 98.9 5.1E-08 1.1E-12 94.4 15.1 162 54-242 5-176 (542)
118 PRK12338 hypothetical protein; 98.9 1.6E-07 3.4E-12 84.7 17.1 168 53-244 2-206 (319)
119 TIGR00017 cmk cytidylate kinas 98.9 8.1E-08 1.8E-12 82.5 14.1 25 56-80 3-27 (217)
120 PRK08118 topology modulation p 98.9 1.1E-08 2.4E-13 84.3 8.3 96 56-195 2-99 (167)
121 cd00464 SK Shikimate kinase (S 98.9 3.9E-08 8.5E-13 78.9 11.4 24 58-81 2-25 (154)
122 KOG3062 RNA polymerase II elon 98.8 1.1E-07 2.4E-12 80.9 14.0 158 56-237 2-175 (281)
123 PRK03333 coaE dephospho-CoA ki 98.8 1.9E-07 4.1E-12 87.1 17.1 69 174-243 123-193 (395)
124 PLN02772 guanylate kinase 98.8 3.7E-08 8E-13 90.8 11.9 167 54-241 134-317 (398)
125 PRK00023 cmk cytidylate kinase 98.8 7.4E-07 1.6E-11 77.0 19.4 28 54-81 3-30 (225)
126 TIGR03708 poly_P_AMP_trns poly 98.8 2.1E-08 4.6E-13 95.1 10.6 163 52-241 296-490 (493)
127 PRK08099 bifunctional DNA-bind 98.8 2.4E-07 5.2E-12 86.4 15.6 197 33-247 194-397 (399)
128 PRK06696 uridine kinase; Valid 98.8 1.2E-07 2.7E-12 81.5 12.7 37 53-89 20-56 (223)
129 PRK12339 2-phosphoglycerate ki 98.8 6.7E-07 1.4E-11 75.7 16.7 27 54-80 2-28 (197)
130 PF00625 Guanylate_kin: Guanyl 98.8 1.2E-07 2.6E-12 79.0 11.9 167 54-242 1-182 (183)
131 PRK13951 bifunctional shikimat 98.7 3.5E-07 7.7E-12 87.4 16.1 24 57-80 2-25 (488)
132 PRK07667 uridine kinase; Provi 98.7 2.9E-07 6.4E-12 77.5 13.6 40 54-93 16-55 (193)
133 cd02022 DPCK Dephospho-coenzym 98.7 2.5E-07 5.5E-12 76.9 13.0 152 57-230 1-178 (179)
134 PF01202 SKI: Shikimate kinase 98.7 5.9E-07 1.3E-11 73.2 14.5 63 175-240 85-157 (158)
135 PRK11860 bifunctional 3-phosph 98.7 7.8E-07 1.7E-11 88.2 18.2 69 172-242 571-655 (661)
136 KOG3347 Predicted nucleotide k 98.7 1.4E-07 3E-12 75.6 10.2 107 54-196 6-114 (176)
137 PRK05416 glmZ(sRNA)-inactivati 98.7 6.6E-07 1.4E-11 80.0 15.7 70 173-242 84-160 (288)
138 PRK09518 bifunctional cytidyla 98.7 1.4E-07 2.9E-12 94.3 12.4 75 172-248 152-237 (712)
139 KOG3078 Adenylate kinase [Nucl 98.7 2.2E-07 4.7E-12 80.0 10.8 175 54-248 14-230 (235)
140 COG0645 Predicted kinase [Gene 98.7 9.5E-07 2.1E-11 72.2 13.9 118 55-197 1-126 (170)
141 PF01121 CoaE: Dephospho-CoA k 98.7 2.3E-07 5E-12 77.4 10.6 151 56-231 1-180 (180)
142 cd02020 CMPK Cytidine monophos 98.6 3.9E-07 8.4E-12 72.3 11.1 24 57-80 1-24 (147)
143 PHA03134 thymidine kinase; Pro 98.6 3.8E-06 8.2E-11 75.9 17.5 162 53-215 11-206 (340)
144 PHA03135 thymidine kinase; Pro 98.6 1E-06 2.2E-11 79.7 13.5 160 54-215 9-202 (343)
145 KOG3220 Similar to bacterial d 98.6 3.1E-06 6.8E-11 71.0 15.3 164 56-243 2-195 (225)
146 PRK04220 2-phosphoglycerate ki 98.6 6.6E-06 1.4E-10 73.7 18.3 172 53-246 90-294 (301)
147 PF13238 AAA_18: AAA domain; P 98.6 9.4E-08 2E-12 73.9 5.1 22 58-79 1-22 (129)
148 COG2326 Uncharacterized conser 98.6 2.3E-07 4.9E-12 80.2 7.7 117 53-195 72-199 (270)
149 PRK06761 hypothetical protein; 98.5 4.4E-06 9.5E-11 74.4 15.9 39 55-93 3-41 (282)
150 TIGR00235 udk uridine kinase. 98.5 4.3E-06 9.2E-11 71.0 15.2 30 52-81 3-32 (207)
151 PRK07261 topology modulation p 98.5 2.6E-07 5.7E-12 76.3 6.4 98 56-194 1-98 (171)
152 cd02019 NK Nucleoside/nucleoti 98.5 7.5E-07 1.6E-11 62.5 7.4 23 57-79 1-23 (69)
153 PRK12269 bifunctional cytidyla 98.4 9E-06 1.9E-10 82.3 17.2 69 172-242 204-285 (863)
154 COG3911 Predicted ATPase [Gene 98.4 1.4E-05 3E-10 64.2 14.3 170 53-236 7-179 (183)
155 PTZ00301 uridine kinase; Provi 98.4 5E-06 1.1E-10 71.1 12.7 28 54-81 2-29 (210)
156 PRK06547 hypothetical protein; 98.4 6.8E-07 1.5E-11 74.0 7.0 29 52-80 12-40 (172)
157 COG4639 Predicted kinase [Gene 98.4 6.9E-06 1.5E-10 66.3 11.5 128 55-211 2-132 (168)
158 PHA03138 thymidine kinase; Pro 98.4 9.7E-06 2.1E-10 73.4 13.4 39 55-93 12-50 (340)
159 KOG4238 Bifunctional ATP sulfu 98.3 5.1E-07 1.1E-11 81.6 4.6 117 53-193 48-168 (627)
160 COG3172 NadR Predicted ATPase/ 98.3 4.2E-05 9.1E-10 62.2 14.9 166 55-247 8-185 (187)
161 PRK12337 2-phosphoglycerate ki 98.3 3.1E-05 6.7E-10 73.1 16.4 29 53-81 253-281 (475)
162 cd02023 UMPK Uridine monophosp 98.3 8.5E-06 1.9E-10 68.5 10.8 24 57-80 1-24 (198)
163 TIGR01663 PNK-3'Pase polynucle 98.2 1.2E-05 2.6E-10 77.4 11.4 102 53-195 367-468 (526)
164 KOG3308 Uncharacterized protei 98.2 2.7E-05 5.9E-10 65.4 11.9 169 53-241 2-203 (225)
165 PRK09270 nucleoside triphospha 98.2 9.7E-06 2.1E-10 70.0 9.7 33 53-85 31-63 (229)
166 COG0572 Udk Uridine kinase [Nu 98.2 3.3E-05 7.1E-10 66.0 12.2 30 53-82 6-35 (218)
167 PF13207 AAA_17: AAA domain; P 98.2 3.1E-06 6.8E-11 65.1 5.2 30 57-89 1-30 (121)
168 cd02024 NRK1 Nicotinamide ribo 98.2 4.7E-06 1E-10 69.9 6.6 24 57-80 1-24 (187)
169 PRK05439 pantothenate kinase; 98.1 1.6E-05 3.4E-10 71.8 9.6 39 52-90 83-123 (311)
170 cd02029 PRK_like Phosphoribulo 98.1 3.7E-05 8.1E-10 67.8 11.3 34 57-90 1-34 (277)
171 PF03668 ATP_bind_2: P-loop AT 98.1 8.9E-05 1.9E-09 65.7 13.7 69 173-241 80-155 (284)
172 TIGR01526 nadR_NMN_Atrans nico 98.1 0.00016 3.5E-09 65.8 15.8 152 55-225 162-318 (325)
173 cd00071 GMPK Guanosine monopho 98.1 2.3E-06 5E-11 68.1 3.1 25 57-81 1-25 (137)
174 PHA03133 thymidine kinase; Pro 98.1 0.00025 5.5E-09 64.6 15.9 160 54-215 39-236 (368)
175 PF06414 Zeta_toxin: Zeta toxi 98.0 4.5E-05 9.9E-10 64.3 9.4 127 53-195 13-141 (199)
176 TIGR00554 panK_bact pantothena 97.9 5.5E-05 1.2E-09 67.7 8.8 30 52-81 59-88 (290)
177 COG2074 2-phosphoglycerate kin 97.9 0.00072 1.6E-08 58.9 14.6 30 51-80 85-114 (299)
178 PF01591 6PF2K: 6-phosphofruct 97.8 0.002 4.4E-08 55.5 16.0 121 54-192 11-142 (222)
179 PF00485 PRK: Phosphoribulokin 97.8 2.6E-05 5.7E-10 65.5 4.1 29 57-85 1-29 (194)
180 PF00693 Herpes_TK: Thymidine 97.8 0.00065 1.4E-08 60.1 12.9 152 62-215 1-188 (281)
181 COG3896 Chloramphenicol 3-O-ph 97.7 0.00085 1.8E-08 54.6 12.2 184 36-240 6-203 (205)
182 PLN02348 phosphoribulokinase 97.7 0.0002 4.2E-09 66.4 9.7 30 53-82 47-76 (395)
183 PRK15453 phosphoribulokinase; 97.7 5.4E-05 1.2E-09 67.3 5.7 37 53-89 3-39 (290)
184 COG1618 Predicted nucleotide k 97.7 5.1E-05 1.1E-09 61.8 4.9 34 54-87 4-37 (179)
185 cd02028 UMPK_like Uridine mono 97.7 6.5E-05 1.4E-09 62.5 4.9 33 57-89 1-33 (179)
186 PRK00771 signal recognition pa 97.6 0.00034 7.4E-09 66.1 9.1 39 53-91 93-131 (437)
187 PRK10751 molybdopterin-guanine 97.6 0.00014 3.1E-09 60.2 5.8 37 53-89 4-40 (173)
188 COG1072 CoaA Panthothenate kin 97.5 0.00022 4.7E-09 62.8 6.6 34 52-85 79-112 (283)
189 PF00448 SRP54: SRP54-type pro 97.5 0.00031 6.7E-09 59.4 7.4 36 55-90 1-36 (196)
190 KOG0707 Guanylate kinase [Nucl 97.5 0.00079 1.7E-08 57.8 9.6 174 55-249 37-228 (231)
191 COG1763 MobB Molybdopterin-gua 97.5 0.00016 3.5E-09 59.1 5.2 36 55-90 2-37 (161)
192 COG1703 ArgK Putative periplas 97.5 0.00022 4.8E-09 63.5 6.4 54 52-105 48-106 (323)
193 KOG0780 Signal recognition par 97.5 0.0012 2.7E-08 60.6 11.2 38 53-90 99-136 (483)
194 KOG1533 Predicted GTPase [Gene 97.5 0.0004 8.6E-09 59.9 7.2 33 58-90 5-37 (290)
195 smart00382 AAA ATPases associa 97.4 0.00015 3.3E-09 55.4 4.1 34 55-88 2-35 (148)
196 cd03115 SRP The signal recogni 97.4 0.00045 9.9E-09 56.6 7.1 35 57-91 2-36 (173)
197 PF03308 ArgK: ArgK protein; 97.4 0.00018 3.8E-09 63.1 4.7 52 53-104 27-83 (266)
198 PF03205 MobB: Molybdopterin g 97.4 0.00025 5.4E-09 56.7 5.2 34 56-89 1-34 (140)
199 TIGR03499 FlhF flagellar biosy 97.4 0.00074 1.6E-08 60.2 8.8 38 53-90 192-231 (282)
200 PRK14974 cell division protein 97.4 0.00048 1E-08 63.0 7.1 38 53-90 138-175 (336)
201 TIGR00176 mobB molybdopterin-g 97.4 0.00028 6.1E-09 57.4 5.0 34 57-90 1-34 (155)
202 cd02025 PanK Pantothenate kina 97.3 0.00027 5.8E-09 60.8 4.8 33 57-89 1-35 (220)
203 PF00004 AAA: ATPase family as 97.3 0.00036 7.8E-09 53.8 4.9 30 58-90 1-30 (132)
204 PRK09435 membrane ATPase/prote 97.3 0.00042 9.1E-09 63.2 5.9 38 53-90 54-91 (332)
205 COG0541 Ffh Signal recognition 97.3 0.0063 1.4E-07 56.9 13.5 39 52-90 97-135 (451)
206 PRK13768 GTPase; Provisional 97.3 0.00039 8.4E-09 61.1 5.4 36 55-90 2-37 (253)
207 cd03116 MobB Molybdenum is an 97.3 0.00046 1E-08 56.4 5.4 35 56-90 2-36 (159)
208 COG1660 Predicted P-loop-conta 97.3 0.0071 1.5E-07 53.0 12.7 66 177-242 85-157 (286)
209 TIGR00064 ftsY signal recognit 97.3 0.001 2.2E-08 59.1 7.6 38 53-90 70-107 (272)
210 PF03266 NTPase_1: NTPase; In 97.2 0.00033 7.2E-09 57.7 4.1 29 58-86 2-30 (168)
211 PRK10416 signal recognition pa 97.2 0.00089 1.9E-08 60.8 7.3 38 53-90 112-149 (318)
212 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.00054 1.2E-08 49.5 4.8 34 57-90 1-34 (99)
213 PF03029 ATP_bind_1: Conserved 97.2 0.00034 7.3E-09 60.9 4.3 31 60-90 1-31 (238)
214 PF13245 AAA_19: Part of AAA d 97.2 0.00066 1.4E-08 48.5 5.0 26 54-79 9-34 (76)
215 COG0552 FtsY Signal recognitio 97.2 0.0018 3.9E-08 58.6 8.9 39 52-90 136-174 (340)
216 PRK14490 putative bifunctional 97.2 0.00057 1.2E-08 63.3 5.8 37 53-90 3-39 (369)
217 PRK07429 phosphoribulokinase; 97.2 0.00057 1.2E-08 62.2 5.2 37 52-88 5-41 (327)
218 cd00009 AAA The AAA+ (ATPases 97.1 0.00086 1.9E-08 51.7 5.3 37 54-90 18-54 (151)
219 PTZ00322 6-phosphofructo-2-kin 97.1 0.0051 1.1E-07 61.3 11.9 38 53-90 213-250 (664)
220 PF13401 AAA_22: AAA domain; P 97.1 0.00053 1.2E-08 53.1 4.0 39 54-92 3-46 (131)
221 TIGR00750 lao LAO/AO transport 97.1 0.00087 1.9E-08 60.3 5.8 39 52-90 31-69 (300)
222 PRK04296 thymidine kinase; Pro 97.1 0.00083 1.8E-08 56.3 5.2 36 54-89 1-36 (190)
223 TIGR01425 SRP54_euk signal rec 97.1 0.0014 3E-08 61.7 7.1 38 53-90 98-135 (429)
224 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00054 1.2E-08 54.4 3.7 30 52-81 19-48 (133)
225 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00053 1.2E-08 63.0 4.1 28 54-81 77-104 (361)
226 PLN02796 D-glycerate 3-kinase 97.1 0.00079 1.7E-08 61.5 5.1 35 53-87 98-132 (347)
227 PF07728 AAA_5: AAA domain (dy 97.0 0.0019 4.2E-08 50.8 6.5 31 58-91 2-32 (139)
228 COG1855 ATPase (PilT family) [ 97.0 0.00082 1.8E-08 62.9 4.8 48 57-105 265-312 (604)
229 PRK14494 putative molybdopteri 97.0 0.0011 2.3E-08 57.4 5.3 35 56-90 2-36 (229)
230 KOG0744 AAA+-type ATPase [Post 97.0 0.00058 1.3E-08 61.5 3.3 26 55-80 177-202 (423)
231 PRK14493 putative bifunctional 97.0 0.0013 2.8E-08 58.5 5.3 33 56-89 2-34 (274)
232 PLN03046 D-glycerate 3-kinase; 97.0 0.0013 2.9E-08 61.5 5.5 37 53-89 210-246 (460)
233 PF13604 AAA_30: AAA domain; P 97.0 0.0018 3.8E-08 54.7 5.8 37 54-90 17-53 (196)
234 PRK10867 signal recognition pa 97.0 0.0023 4.9E-08 60.5 7.1 38 53-90 98-136 (433)
235 PF05729 NACHT: NACHT domain 96.9 0.00095 2.1E-08 53.4 4.0 28 56-83 1-28 (166)
236 COG1136 SalX ABC-type antimicr 96.9 0.00076 1.6E-08 58.1 3.5 29 52-80 28-56 (226)
237 PLN02840 tRNA dimethylallyltra 96.9 0.00073 1.6E-08 63.3 3.6 30 52-81 18-47 (421)
238 PRK14489 putative bifunctional 96.9 0.0016 3.4E-08 60.3 5.8 37 54-90 204-240 (366)
239 PLN02165 adenylate isopentenyl 96.9 0.0008 1.7E-08 61.2 3.6 29 53-81 41-69 (334)
240 PRK12724 flagellar biosynthesi 96.9 0.0023 5E-08 60.1 6.7 37 54-90 222-259 (432)
241 cd03114 ArgK-like The function 96.9 0.0016 3.5E-08 52.5 5.0 34 57-90 1-34 (148)
242 cd01131 PilT Pilus retraction 96.9 0.0017 3.6E-08 54.9 5.3 36 57-92 3-39 (198)
243 PRK14495 putative molybdopteri 96.9 0.0015 3.3E-08 61.3 5.5 35 56-90 2-36 (452)
244 PRK05703 flhF flagellar biosyn 96.9 0.0039 8.5E-08 58.8 8.2 38 54-91 220-259 (424)
245 cd01120 RecA-like_NTPases RecA 96.9 0.0018 3.9E-08 51.3 5.1 35 57-91 1-35 (165)
246 cd02026 PRK Phosphoribulokinas 96.9 0.00094 2E-08 59.3 3.7 32 57-88 1-32 (273)
247 KOG0781 Signal recognition par 96.9 0.0083 1.8E-07 56.7 9.9 36 53-88 376-411 (587)
248 PRK12723 flagellar biosynthesi 96.9 0.0055 1.2E-07 57.1 8.7 38 53-90 172-213 (388)
249 PF03215 Rad17: Rad17 cell cyc 96.9 0.0015 3.3E-08 63.0 5.2 37 54-93 44-80 (519)
250 cd01394 radB RadB. The archaea 96.8 0.0023 4.9E-08 54.5 5.7 38 53-90 17-54 (218)
251 TIGR02237 recomb_radB DNA repa 96.8 0.0024 5.2E-08 53.9 5.8 40 52-91 9-48 (209)
252 PHA00729 NTP-binding motif con 96.8 0.0011 2.3E-08 57.3 3.6 25 56-80 18-42 (226)
253 PRK00091 miaA tRNA delta(2)-is 96.8 0.00098 2.1E-08 60.2 3.5 28 54-81 3-30 (307)
254 PRK06851 hypothetical protein; 96.8 0.0022 4.8E-08 59.2 5.9 35 54-88 29-63 (367)
255 PRK05800 cobU adenosylcobinami 96.8 0.001 2.2E-08 54.9 3.3 26 55-80 1-26 (170)
256 PRK12726 flagellar biosynthesi 96.8 0.0045 9.7E-08 57.5 7.5 38 53-90 204-241 (407)
257 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0027 5.8E-08 54.0 5.7 38 53-90 36-73 (226)
258 PF13555 AAA_29: P-loop contai 96.8 0.0021 4.6E-08 44.1 4.0 26 54-79 22-47 (62)
259 PRK11889 flhF flagellar biosyn 96.8 0.0041 8.8E-08 58.0 7.2 37 54-90 240-276 (436)
260 TIGR02881 spore_V_K stage V sp 96.8 0.002 4.3E-08 56.7 5.0 30 54-83 41-70 (261)
261 PRK13695 putative NTPase; Prov 96.8 0.0026 5.5E-08 52.3 5.4 31 56-86 1-31 (174)
262 PF00437 T2SE: Type II/IV secr 96.8 0.0023 4.9E-08 56.4 5.3 40 54-93 126-165 (270)
263 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0014 3E-08 50.1 3.3 24 53-76 13-36 (107)
264 PF13191 AAA_16: AAA ATPase do 96.8 0.002 4.4E-08 52.6 4.6 31 52-82 21-51 (185)
265 PRK09183 transposase/IS protei 96.7 0.0026 5.5E-08 56.1 5.4 38 53-90 100-137 (259)
266 COG1126 GlnQ ABC-type polar am 96.7 0.0013 2.8E-08 56.3 3.3 24 52-75 25-48 (240)
267 COG0378 HypB Ni2+-binding GTPa 96.7 0.0033 7.3E-08 52.8 5.8 33 53-86 10-43 (202)
268 COG4619 ABC-type uncharacteriz 96.7 0.0014 3E-08 54.2 3.4 28 52-79 26-53 (223)
269 CHL00181 cbbX CbbX; Provisiona 96.7 0.0018 4E-08 57.9 4.5 32 53-84 57-88 (287)
270 KOG1384 tRNA delta(2)-isopente 96.7 0.0074 1.6E-07 54.5 7.8 28 54-81 6-33 (348)
271 PRK12727 flagellar biosynthesi 96.7 0.0086 1.9E-07 57.8 8.7 38 53-90 348-387 (559)
272 TIGR00959 ffh signal recogniti 96.7 0.0054 1.2E-07 57.9 7.3 38 53-90 97-135 (428)
273 PF02367 UPF0079: Uncharacteri 96.7 0.0019 4.1E-08 50.5 3.5 30 52-81 12-41 (123)
274 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0029 6.2E-08 56.0 5.1 39 54-92 79-117 (264)
275 KOG1532 GTPase XAB1, interacts 96.7 0.022 4.7E-07 50.5 10.3 33 52-84 16-48 (366)
276 cd02034 CooC The accessory pro 96.6 0.0042 9E-08 48.0 5.2 33 58-90 2-34 (116)
277 cd01124 KaiC KaiC is a circadi 96.6 0.0043 9.4E-08 51.0 5.6 34 57-90 1-34 (187)
278 PF05496 RuvB_N: Holliday junc 96.6 0.0027 5.9E-08 54.7 4.4 33 57-92 52-84 (233)
279 PF13173 AAA_14: AAA domain 96.6 0.0025 5.4E-08 49.7 3.9 26 55-80 2-27 (128)
280 PRK09361 radB DNA repair and r 96.6 0.0046 9.9E-08 52.9 5.8 39 53-91 21-59 (225)
281 PLN02748 tRNA dimethylallyltra 96.6 0.0019 4.2E-08 61.4 3.7 30 51-80 18-47 (468)
282 PRK10463 hydrogenase nickel in 96.6 0.0046 9.9E-08 55.3 5.8 30 53-82 102-131 (290)
283 PF00910 RNA_helicase: RNA hel 96.6 0.0019 4.2E-08 48.9 3.0 24 58-81 1-24 (107)
284 COG1116 TauB ABC-type nitrate/ 96.6 0.0021 4.5E-08 55.9 3.5 30 52-81 26-55 (248)
285 PRK06851 hypothetical protein; 96.6 0.0045 9.7E-08 57.2 5.9 37 55-91 214-250 (367)
286 PF01695 IstB_IS21: IstB-like 96.6 0.0047 1E-07 51.3 5.5 39 53-91 45-83 (178)
287 PRK12377 putative replication 96.6 0.0037 8.1E-08 54.8 5.1 35 56-90 102-136 (248)
288 PF00005 ABC_tran: ABC transpo 96.6 0.0022 4.7E-08 50.2 3.4 30 52-81 8-37 (137)
289 PRK08084 DNA replication initi 96.5 0.005 1.1E-07 53.4 5.7 37 55-91 45-81 (235)
290 PRK13764 ATPase; Provisional 96.5 0.0038 8.2E-08 61.2 5.5 39 54-92 256-294 (602)
291 cd01130 VirB11-like_ATPase Typ 96.5 0.0032 7E-08 52.5 4.2 29 53-81 23-51 (186)
292 TIGR00960 3a0501s02 Type II (G 96.5 0.0024 5.2E-08 54.2 3.5 29 52-80 26-54 (216)
293 TIGR01166 cbiO cobalt transpor 96.5 0.0025 5.4E-08 53.1 3.5 29 52-80 15-43 (190)
294 PF03193 DUF258: Protein of un 96.5 0.0026 5.5E-08 52.1 3.4 27 53-79 33-59 (161)
295 cd00984 DnaB_C DnaB helicase C 96.5 0.0093 2E-07 51.3 7.2 39 52-90 10-49 (242)
296 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0025 5.5E-08 54.1 3.5 29 52-80 27-55 (218)
297 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0026 5.6E-08 53.8 3.5 29 52-80 24-52 (211)
298 cd03292 ABC_FtsE_transporter F 96.5 0.0026 5.6E-08 53.9 3.5 29 52-80 24-52 (214)
299 PRK10536 hypothetical protein; 96.5 0.033 7.2E-07 49.0 10.4 38 55-92 74-112 (262)
300 TIGR02673 FtsE cell division A 96.5 0.0026 5.7E-08 53.9 3.5 29 52-80 25-53 (214)
301 PRK08116 hypothetical protein; 96.5 0.02 4.3E-07 50.7 9.2 36 55-90 114-149 (268)
302 PRK08533 flagellar accessory p 96.5 0.0087 1.9E-07 51.8 6.7 39 52-90 21-59 (230)
303 PRK05973 replicative DNA helic 96.5 0.0071 1.5E-07 52.7 6.1 39 52-90 61-99 (237)
304 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.0047 1E-07 57.0 5.2 27 54-80 133-159 (358)
305 PRK08903 DnaA regulatory inact 96.4 0.0061 1.3E-07 52.2 5.6 37 54-90 41-77 (227)
306 PRK14723 flhF flagellar biosyn 96.4 0.015 3.2E-07 58.5 9.0 36 54-89 184-221 (767)
307 cd03269 ABC_putative_ATPase Th 96.4 0.0029 6.2E-08 53.5 3.5 29 52-80 23-51 (210)
308 TIGR02880 cbbX_cfxQ probable R 96.4 0.0037 7.9E-08 55.8 4.4 31 54-84 57-87 (284)
309 cd03238 ABC_UvrA The excision 96.4 0.0029 6.3E-08 52.6 3.4 25 52-76 18-42 (176)
310 PRK14722 flhF flagellar biosyn 96.4 0.0098 2.1E-07 55.1 7.2 37 52-88 134-172 (374)
311 PRK06893 DNA replication initi 96.4 0.0057 1.2E-07 52.8 5.3 37 54-90 38-74 (229)
312 COG3839 MalK ABC-type sugar tr 96.4 0.0027 5.9E-08 57.9 3.5 28 53-80 27-54 (338)
313 TIGR00101 ureG urease accessor 96.4 0.0087 1.9E-07 50.6 6.4 27 55-81 1-27 (199)
314 cd03260 ABC_PstB_phosphate_tra 96.4 0.003 6.6E-08 54.0 3.6 28 52-79 23-50 (227)
315 PF06309 Torsin: Torsin; Inte 96.4 0.0056 1.2E-07 48.0 4.7 34 51-84 49-82 (127)
316 TIGR02211 LolD_lipo_ex lipopro 96.4 0.003 6.6E-08 53.7 3.5 29 52-80 28-56 (221)
317 cd03261 ABC_Org_Solvent_Resist 96.4 0.003 6.5E-08 54.4 3.5 29 52-80 23-51 (235)
318 PF09848 DUF2075: Uncharacteri 96.4 0.013 2.9E-07 53.7 8.0 49 56-107 2-52 (352)
319 cd03259 ABC_Carb_Solutes_like 96.4 0.0031 6.8E-08 53.4 3.5 29 52-80 23-51 (213)
320 TIGR03608 L_ocin_972_ABC putat 96.4 0.0031 6.6E-08 53.1 3.4 29 52-80 21-49 (206)
321 PF02492 cobW: CobW/HypB/UreG, 96.4 0.0062 1.3E-07 50.4 5.2 33 56-89 1-33 (178)
322 KOG2004 Mitochondrial ATP-depe 96.4 0.0023 5.1E-08 63.0 2.9 34 51-84 434-467 (906)
323 TIGR03015 pepcterm_ATPase puta 96.4 0.0041 8.9E-08 54.4 4.3 28 55-82 43-70 (269)
324 PF06745 KaiC: KaiC; InterPro 96.4 0.009 1.9E-07 51.1 6.3 39 53-91 17-56 (226)
325 cd03256 ABC_PhnC_transporter A 96.4 0.0032 6.9E-08 54.3 3.5 29 52-80 24-52 (241)
326 TIGR02315 ABC_phnC phosphonate 96.4 0.0032 6.9E-08 54.4 3.5 29 52-80 25-53 (243)
327 cd03263 ABC_subfamily_A The AB 96.4 0.0032 7E-08 53.5 3.5 29 52-80 25-53 (220)
328 PRK14491 putative bifunctional 96.4 0.0067 1.5E-07 59.7 6.1 37 54-90 9-45 (597)
329 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0032 7E-08 53.0 3.4 29 52-80 23-51 (205)
330 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.0063 1.4E-07 53.6 5.4 38 53-90 34-71 (259)
331 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.0031 6.7E-08 53.7 3.3 29 52-80 27-55 (220)
332 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0033 7.1E-08 52.3 3.3 29 52-80 22-50 (177)
333 cd03224 ABC_TM1139_LivF_branch 96.4 0.0032 6.9E-08 53.6 3.4 29 52-80 23-51 (222)
334 cd03229 ABC_Class3 This class 96.4 0.0036 7.7E-08 51.7 3.6 29 52-80 23-51 (178)
335 cd03257 ABC_NikE_OppD_transpor 96.4 0.0032 7E-08 53.7 3.4 29 52-80 28-56 (228)
336 cd03301 ABC_MalK_N The N-termi 96.3 0.0035 7.5E-08 53.1 3.6 29 52-80 23-51 (213)
337 cd03219 ABC_Mj1267_LivG_branch 96.3 0.0031 6.7E-08 54.3 3.3 29 52-80 23-51 (236)
338 cd03264 ABC_drug_resistance_li 96.3 0.0031 6.7E-08 53.3 3.2 27 53-80 24-50 (211)
339 cd01128 rho_factor Transcripti 96.3 0.035 7.6E-07 48.7 9.9 32 51-82 12-43 (249)
340 cd03235 ABC_Metallic_Cations A 96.3 0.0031 6.8E-08 53.4 3.2 29 52-80 22-50 (213)
341 cd03262 ABC_HisP_GlnQ_permease 96.3 0.0036 7.8E-08 52.9 3.5 29 52-80 23-51 (213)
342 PRK06526 transposase; Provisio 96.3 0.0044 9.6E-08 54.5 4.2 35 54-88 97-131 (254)
343 cd03258 ABC_MetN_methionine_tr 96.3 0.0036 7.8E-08 53.8 3.5 30 52-81 28-57 (233)
344 PRK08727 hypothetical protein; 96.3 0.0073 1.6E-07 52.3 5.5 36 55-90 41-76 (233)
345 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.011 2.4E-07 50.6 6.5 39 52-90 17-55 (229)
346 cd03223 ABCD_peroxisomal_ALDP 96.3 0.0039 8.4E-08 51.0 3.5 29 52-80 24-52 (166)
347 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0038 8.3E-08 51.3 3.5 29 52-80 23-51 (173)
348 cd03268 ABC_BcrA_bacitracin_re 96.3 0.0038 8.2E-08 52.7 3.5 29 52-80 23-51 (208)
349 COG3842 PotA ABC-type spermidi 96.3 0.0034 7.5E-08 57.6 3.5 29 52-80 28-56 (352)
350 PRK11629 lolD lipoprotein tran 96.3 0.0037 8.1E-08 53.8 3.5 29 52-80 32-60 (233)
351 cd03246 ABCC_Protease_Secretio 96.3 0.0041 8.8E-08 51.1 3.6 29 52-80 25-53 (173)
352 COG1120 FepC ABC-type cobalami 96.3 0.0043 9.3E-08 54.6 3.9 30 52-81 25-54 (258)
353 TIGR01420 pilT_fam pilus retra 96.3 0.0064 1.4E-07 55.7 5.2 39 54-92 121-160 (343)
354 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.014 3E-07 50.5 7.1 39 52-90 18-56 (237)
355 COG4185 Uncharacterized protei 96.3 0.056 1.2E-06 44.2 9.9 27 55-81 2-28 (187)
356 cd03296 ABC_CysA_sulfate_impor 96.3 0.0039 8.4E-08 53.9 3.5 29 52-80 25-53 (239)
357 cd03265 ABC_DrrA DrrA is the A 96.3 0.004 8.7E-08 53.0 3.6 29 52-80 23-51 (220)
358 cd03214 ABC_Iron-Siderophores_ 96.3 0.0042 9.1E-08 51.3 3.5 29 52-80 22-50 (180)
359 cd03232 ABC_PDR_domain2 The pl 96.3 0.0039 8.4E-08 52.2 3.3 27 52-78 30-56 (192)
360 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.004 8.8E-08 53.7 3.5 29 52-80 24-52 (236)
361 TIGR01978 sufC FeS assembly AT 96.3 0.0039 8.5E-08 53.8 3.4 27 52-78 23-49 (243)
362 PRK06995 flhF flagellar biosyn 96.3 0.014 3E-07 55.9 7.4 37 53-89 254-292 (484)
363 cd03247 ABCC_cytochrome_bd The 96.2 0.0044 9.4E-08 51.1 3.5 29 52-80 25-53 (178)
364 PRK15177 Vi polysaccharide exp 96.2 0.0042 9.1E-08 52.9 3.5 29 52-80 10-38 (213)
365 PF13086 AAA_11: AAA domain; P 96.2 0.0088 1.9E-07 50.4 5.4 24 56-79 18-41 (236)
366 PRK11124 artP arginine transpo 96.2 0.0042 9.2E-08 53.7 3.5 29 52-80 25-53 (242)
367 PRK13541 cytochrome c biogenes 96.2 0.0044 9.5E-08 51.9 3.5 29 52-80 23-51 (195)
368 PRK13539 cytochrome c biogenes 96.2 0.0044 9.5E-08 52.4 3.5 29 52-80 25-53 (207)
369 PRK10584 putative ABC transpor 96.2 0.0043 9.4E-08 53.1 3.5 29 52-80 33-61 (228)
370 TIGR00390 hslU ATP-dependent p 96.2 0.01 2.2E-07 55.8 6.1 31 54-84 46-76 (441)
371 PRK10247 putative ABC transpor 96.2 0.0043 9.4E-08 53.1 3.5 29 52-80 30-58 (225)
372 cd03218 ABC_YhbG The ABC trans 96.2 0.0043 9.3E-08 53.2 3.5 29 52-80 23-51 (232)
373 cd04163 Era Era subfamily. Er 96.2 0.0045 9.8E-08 48.8 3.4 23 55-77 3-25 (168)
374 COG4240 Predicted kinase [Gene 96.2 0.0081 1.7E-07 51.9 5.0 37 52-88 47-84 (300)
375 PRK06067 flagellar accessory p 96.2 0.012 2.7E-07 50.6 6.4 40 52-91 22-61 (234)
376 TIGR03410 urea_trans_UrtE urea 96.2 0.0043 9.2E-08 53.2 3.4 29 52-80 23-51 (230)
377 TIGR02770 nickel_nikD nickel i 96.2 0.0043 9.2E-08 53.3 3.4 29 52-80 9-37 (230)
378 PRK13540 cytochrome c biogenes 96.2 0.0046 1E-07 52.0 3.6 29 52-80 24-52 (200)
379 PRK08181 transposase; Validate 96.2 0.0076 1.7E-07 53.5 5.1 37 54-90 105-141 (269)
380 PRK11248 tauB taurine transpor 96.2 0.0044 9.5E-08 54.3 3.5 29 52-80 24-52 (255)
381 PHA02575 1 deoxynucleoside mon 96.2 0.004 8.7E-08 53.6 3.1 23 56-78 1-23 (227)
382 PF13189 Cytidylate_kin2: Cyti 96.2 0.074 1.6E-06 44.1 10.7 24 57-80 1-24 (179)
383 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0045 9.7E-08 47.1 3.1 20 58-77 2-21 (116)
384 PF08477 Miro: Miro-like prote 96.2 0.0049 1.1E-07 46.7 3.3 22 58-79 2-23 (119)
385 TIGR02782 TrbB_P P-type conjug 96.2 0.0082 1.8E-07 54.0 5.2 38 54-91 131-170 (299)
386 PRK14250 phosphate ABC transpo 96.2 0.0046 1E-07 53.6 3.5 29 52-80 26-54 (241)
387 PRK10895 lipopolysaccharide AB 96.2 0.0046 1E-07 53.4 3.5 29 52-80 26-54 (241)
388 cd03245 ABCC_bacteriocin_expor 96.2 0.0047 1E-07 52.5 3.5 29 52-80 27-55 (220)
389 PRK14242 phosphate transporter 96.2 0.0045 9.7E-08 53.9 3.5 28 52-79 29-56 (253)
390 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0048 1E-07 49.3 3.3 29 52-80 23-51 (144)
391 PRK11264 putative amino-acid A 96.2 0.0047 1E-07 53.6 3.5 29 52-80 26-54 (250)
392 cd03266 ABC_NatA_sodium_export 96.2 0.0048 1E-07 52.4 3.5 29 52-80 28-56 (218)
393 cd03254 ABCC_Glucan_exporter_l 96.2 0.0048 1E-07 52.8 3.5 29 52-80 26-54 (229)
394 TIGR03771 anch_rpt_ABC anchore 96.2 0.0048 1E-07 52.9 3.5 28 53-80 4-31 (223)
395 cd03216 ABC_Carb_Monos_I This 96.2 0.005 1.1E-07 50.2 3.4 29 52-80 23-51 (163)
396 PF10662 PduV-EutP: Ethanolami 96.2 0.0045 9.6E-08 49.7 3.0 22 56-77 2-23 (143)
397 PRK15455 PrkA family serine pr 96.2 0.0045 9.7E-08 60.2 3.6 30 53-82 101-130 (644)
398 PRK14247 phosphate ABC transpo 96.2 0.0048 1E-07 53.6 3.5 29 52-80 26-54 (250)
399 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0052 1.1E-07 53.6 3.7 29 52-80 22-50 (246)
400 PRK09493 glnQ glutamine ABC tr 96.2 0.0049 1.1E-07 53.3 3.5 29 52-80 24-52 (240)
401 KOG1970 Checkpoint RAD17-RFC c 96.2 0.006 1.3E-07 58.5 4.3 37 53-92 108-144 (634)
402 cd03271 ABC_UvrA_II The excisi 96.2 0.0044 9.5E-08 54.7 3.2 24 52-75 18-41 (261)
403 TIGR02640 gas_vesic_GvpN gas v 96.1 0.0081 1.8E-07 52.9 4.9 33 54-89 20-52 (262)
404 cd03250 ABCC_MRP_domain1 Domai 96.1 0.0051 1.1E-07 51.7 3.5 29 52-80 28-56 (204)
405 cd03228 ABCC_MRP_Like The MRP 96.1 0.0054 1.2E-07 50.3 3.6 29 52-80 25-53 (171)
406 PRK13538 cytochrome c biogenes 96.1 0.0051 1.1E-07 51.8 3.5 29 52-80 24-52 (204)
407 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0051 1.1E-07 52.0 3.5 29 52-80 21-49 (211)
408 TIGR02323 CP_lyasePhnK phospho 96.1 0.0048 1E-07 53.7 3.4 29 52-80 26-54 (253)
409 cd03215 ABC_Carb_Monos_II This 96.1 0.0051 1.1E-07 50.9 3.4 29 52-80 23-51 (182)
410 cd03295 ABC_OpuCA_Osmoprotecti 96.1 0.0052 1.1E-07 53.2 3.6 29 52-80 24-52 (242)
411 PRK10908 cell division protein 96.1 0.0053 1.1E-07 52.4 3.5 29 52-80 25-53 (222)
412 PRK11701 phnK phosphonate C-P 96.1 0.0049 1.1E-07 53.9 3.4 29 52-80 29-57 (258)
413 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.1 0.0051 1.1E-07 52.7 3.4 29 52-80 45-73 (224)
414 TIGR01650 PD_CobS cobaltochela 96.1 0.005 1.1E-07 56.0 3.5 28 55-82 64-91 (327)
415 PRK14267 phosphate ABC transpo 96.1 0.0052 1.1E-07 53.5 3.5 29 52-80 27-55 (253)
416 PRK09169 hypothetical protein; 96.1 0.019 4.1E-07 62.7 8.2 112 54-195 2109-2220(2316)
417 PRK14274 phosphate ABC transpo 96.1 0.0053 1.1E-07 53.7 3.5 29 52-80 35-63 (259)
418 cd03253 ABCC_ATM1_transporter 96.1 0.0053 1.2E-07 52.8 3.5 29 52-80 24-52 (236)
419 TIGR01184 ntrCD nitrate transp 96.1 0.0054 1.2E-07 52.8 3.5 29 52-80 8-36 (230)
420 cd03244 ABCC_MRP_domain2 Domai 96.1 0.0055 1.2E-07 52.1 3.6 29 52-80 27-55 (221)
421 COG3840 ThiQ ABC-type thiamine 96.1 0.005 1.1E-07 51.5 3.1 29 52-80 22-50 (231)
422 PLN02318 phosphoribulokinase/u 96.1 0.0049 1.1E-07 60.1 3.5 27 54-80 64-90 (656)
423 PRK14262 phosphate ABC transpo 96.1 0.0053 1.2E-07 53.3 3.5 29 52-80 26-54 (250)
424 PRK07952 DNA replication prote 96.1 0.01 2.2E-07 51.9 5.2 35 56-90 100-134 (244)
425 TIGR00073 hypB hydrogenase acc 96.1 0.007 1.5E-07 51.3 4.1 29 53-81 20-48 (207)
426 TIGR00972 3a0107s01c2 phosphat 96.1 0.0055 1.2E-07 53.2 3.5 29 52-80 24-52 (247)
427 TIGR03005 ectoine_ehuA ectoine 96.1 0.0054 1.2E-07 53.4 3.5 29 52-80 23-51 (252)
428 PRK11247 ssuB aliphatic sulfon 96.1 0.0055 1.2E-07 53.8 3.5 29 52-80 35-63 (257)
429 cd03233 ABC_PDR_domain1 The pl 96.1 0.0051 1.1E-07 51.9 3.2 29 52-80 30-58 (202)
430 COG2884 FtsE Predicted ATPase 96.1 0.0056 1.2E-07 51.5 3.3 30 51-80 24-53 (223)
431 PRK10744 pstB phosphate transp 96.1 0.0055 1.2E-07 53.7 3.5 29 52-80 36-64 (260)
432 PF07693 KAP_NTPase: KAP famil 96.1 0.0094 2E-07 53.5 5.1 30 53-82 18-47 (325)
433 cd03252 ABCC_Hemolysin The ABC 96.1 0.0056 1.2E-07 52.7 3.5 29 52-80 25-53 (237)
434 TIGR01189 ccmA heme ABC export 96.1 0.006 1.3E-07 51.1 3.6 29 52-80 23-51 (198)
435 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.1 0.0057 1.2E-07 52.7 3.5 29 52-80 26-54 (238)
436 cd03251 ABCC_MsbA MsbA is an e 96.1 0.0058 1.3E-07 52.5 3.5 29 52-80 25-53 (234)
437 PRK14241 phosphate transporter 96.1 0.0056 1.2E-07 53.5 3.5 29 52-80 27-55 (258)
438 cd03234 ABCG_White The White s 96.1 0.0057 1.2E-07 52.4 3.4 29 52-80 30-58 (226)
439 PRK10771 thiQ thiamine transpo 96.0 0.0057 1.2E-07 52.6 3.4 29 52-80 22-50 (232)
440 PRK13648 cbiO cobalt transport 96.0 0.0059 1.3E-07 53.8 3.5 29 52-80 32-60 (269)
441 cd03283 ABC_MutS-like MutS-lik 96.0 0.0062 1.3E-07 51.5 3.5 33 53-85 23-57 (199)
442 PRK14255 phosphate ABC transpo 96.0 0.0059 1.3E-07 53.1 3.5 28 52-79 28-55 (252)
443 PRK06921 hypothetical protein; 96.0 0.012 2.5E-07 52.2 5.4 37 54-90 116-153 (266)
444 PRK11300 livG leucine/isoleuci 96.0 0.0057 1.2E-07 53.3 3.4 29 52-80 28-56 (255)
445 cd02033 BchX Chlorophyllide re 96.0 0.017 3.7E-07 52.7 6.6 38 52-89 28-65 (329)
446 PF07726 AAA_3: ATPase family 96.0 0.003 6.6E-08 49.7 1.4 24 58-81 2-25 (131)
447 cd03217 ABC_FeS_Assembly ABC-t 96.0 0.0062 1.4E-07 51.2 3.5 27 52-78 23-49 (200)
448 PRK14248 phosphate ABC transpo 96.0 0.0061 1.3E-07 53.7 3.5 28 52-79 44-71 (268)
449 TIGR02324 CP_lyasePhnL phospho 96.0 0.0063 1.4E-07 51.9 3.5 29 52-80 31-59 (224)
450 cd03236 ABC_RNaseL_inhibitor_d 96.0 0.0063 1.4E-07 53.5 3.6 30 52-81 23-52 (255)
451 PRK10575 iron-hydroxamate tran 96.0 0.0057 1.2E-07 53.8 3.3 29 52-80 34-62 (265)
452 PRK15056 manganese/iron transp 96.0 0.0061 1.3E-07 53.8 3.5 29 52-80 30-58 (272)
453 COG2256 MGS1 ATPase related to 96.0 0.0058 1.3E-07 56.6 3.4 24 58-81 51-74 (436)
454 PRK14256 phosphate ABC transpo 96.0 0.0064 1.4E-07 53.0 3.5 29 52-80 27-55 (252)
455 PRK14240 phosphate transporter 96.0 0.0065 1.4E-07 52.8 3.5 28 52-79 26-53 (250)
456 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.0062 1.3E-07 53.4 3.3 29 52-80 27-55 (254)
457 TIGR01277 thiQ thiamine ABC tr 96.0 0.0064 1.4E-07 51.6 3.4 29 52-80 21-49 (213)
458 cd03248 ABCC_TAP TAP, the Tran 96.0 0.0067 1.5E-07 51.8 3.5 29 52-80 37-65 (226)
459 cd03369 ABCC_NFT1 Domain 2 of 96.0 0.0069 1.5E-07 51.1 3.6 29 52-80 31-59 (207)
460 COG2805 PilT Tfp pilus assembl 96.0 0.011 2.4E-07 52.9 4.9 39 54-92 124-163 (353)
461 PRK14235 phosphate transporter 96.0 0.0067 1.4E-07 53.5 3.6 29 52-80 42-70 (267)
462 COG1484 DnaC DNA replication p 96.0 0.011 2.3E-07 52.0 4.8 39 54-92 104-142 (254)
463 COG0466 Lon ATP-dependent Lon 96.0 0.0057 1.2E-07 60.3 3.3 33 51-83 346-378 (782)
464 PRK09544 znuC high-affinity zi 96.0 0.0067 1.5E-07 53.1 3.5 29 52-80 27-55 (251)
465 PRK14251 phosphate ABC transpo 96.0 0.0068 1.5E-07 52.7 3.5 29 52-80 27-55 (251)
466 PF07724 AAA_2: AAA domain (Cd 96.0 0.016 3.4E-07 47.9 5.5 36 56-91 4-40 (171)
467 PRK14259 phosphate ABC transpo 96.0 0.0066 1.4E-07 53.6 3.5 29 52-80 36-64 (269)
468 PRK13543 cytochrome c biogenes 96.0 0.007 1.5E-07 51.5 3.5 29 52-80 34-62 (214)
469 PRK13638 cbiO cobalt transport 96.0 0.0063 1.4E-07 53.7 3.3 29 52-80 24-52 (271)
470 PRK14269 phosphate ABC transpo 96.0 0.0069 1.5E-07 52.6 3.5 28 52-79 25-52 (246)
471 PRK14239 phosphate transporter 96.0 0.0067 1.5E-07 52.7 3.5 27 52-78 28-54 (252)
472 cd03267 ABC_NatA_like Similar 96.0 0.0068 1.5E-07 52.4 3.5 29 52-80 44-72 (236)
473 TIGR02769 nickel_nikE nickel i 95.9 0.0068 1.5E-07 53.3 3.5 29 52-80 34-62 (265)
474 PRK14270 phosphate ABC transpo 95.9 0.0071 1.5E-07 52.6 3.6 29 52-80 27-55 (251)
475 TIGR02868 CydC thiol reductant 95.9 0.0062 1.3E-07 58.8 3.5 29 52-80 358-386 (529)
476 CHL00131 ycf16 sulfate ABC tra 95.9 0.0063 1.4E-07 52.9 3.2 27 52-78 30-56 (252)
477 PRK13649 cbiO cobalt transport 95.9 0.0066 1.4E-07 53.8 3.4 29 52-80 30-58 (280)
478 cd03290 ABCC_SUR1_N The SUR do 95.9 0.0072 1.6E-07 51.4 3.5 29 52-80 24-52 (218)
479 PRK14249 phosphate ABC transpo 95.9 0.0071 1.5E-07 52.6 3.6 30 52-81 27-56 (251)
480 PRK10419 nikE nickel transport 95.9 0.0068 1.5E-07 53.5 3.5 29 52-80 35-63 (268)
481 COG0467 RAD55 RecA-superfamily 95.9 0.018 4E-07 50.4 6.2 39 52-90 20-58 (260)
482 TIGR03880 KaiC_arch_3 KaiC dom 95.9 0.021 4.6E-07 48.7 6.4 38 53-90 14-51 (224)
483 PRK08939 primosomal protein Dn 95.9 0.012 2.5E-07 53.2 5.0 39 54-92 155-193 (306)
484 PRK14245 phosphate ABC transpo 95.9 0.0069 1.5E-07 52.7 3.4 27 52-78 26-52 (250)
485 TIGR00968 3a0106s01 sulfate AB 95.9 0.0073 1.6E-07 52.2 3.5 29 52-80 23-51 (237)
486 TIGR03740 galliderm_ABC gallid 95.9 0.0074 1.6E-07 51.5 3.5 29 52-80 23-51 (223)
487 cd03294 ABC_Pro_Gly_Bertaine T 95.9 0.0072 1.6E-07 53.3 3.5 29 52-80 47-75 (269)
488 cd03213 ABCG_EPDR ABCG transpo 95.9 0.0073 1.6E-07 50.6 3.4 28 52-79 32-59 (194)
489 PRK14268 phosphate ABC transpo 95.9 0.0072 1.6E-07 52.9 3.5 29 52-80 35-63 (258)
490 PRK04328 hypothetical protein; 95.9 0.019 4.1E-07 50.2 6.1 38 53-90 21-58 (249)
491 PLN03025 replication factor C 95.9 0.018 4E-07 52.1 6.2 28 57-84 36-63 (319)
492 PRK10646 ADP-binding protein; 95.9 0.0088 1.9E-07 48.6 3.7 30 52-81 25-54 (153)
493 TIGR03411 urea_trans_UrtD urea 95.9 0.0073 1.6E-07 52.2 3.5 29 52-80 25-53 (242)
494 TIGR02525 plasmid_TraJ plasmid 95.9 0.014 3E-07 54.2 5.5 38 55-92 149-188 (372)
495 PRK13547 hmuV hemin importer A 95.9 0.0071 1.5E-07 53.6 3.4 29 52-80 24-52 (272)
496 PRK13632 cbiO cobalt transport 95.9 0.0072 1.6E-07 53.4 3.5 29 52-80 32-60 (271)
497 PRK13833 conjugal transfer pro 95.9 0.013 2.9E-07 53.2 5.3 26 55-80 144-169 (323)
498 PRK13647 cbiO cobalt transport 95.9 0.0071 1.5E-07 53.5 3.5 29 52-80 28-56 (274)
499 PRK11831 putative ABC transpor 95.9 0.0072 1.6E-07 53.3 3.5 29 52-80 30-58 (269)
500 PRK13548 hmuV hemin importer A 95.9 0.0071 1.5E-07 53.0 3.4 29 52-80 25-53 (258)
No 1
>PLN02924 thymidylate kinase
Probab=100.00 E-value=4.1e-44 Score=307.52 Aligned_cols=209 Identities=76% Similarity=1.270 Sum_probs=194.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+..+|++|+|||+||||||||++.|+++|...|+.++.+++|..++++|+.|++++.+...+++.+..++|+++|+++..
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~ 91 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS 91 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999998999987789999999998876678899999999999999888
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ 210 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~ 210 (259)
.++|++++|.+||+|||++|+++|+.++|++.+|+..++..++.||++||||+||+++.+|...+.+++|..+|++++++
T Consensus 92 ~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv~~ 171 (220)
T PLN02924 92 LMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAK 171 (220)
T ss_pred HHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHHHHH
Confidence 89999999999999999999999998888899999988888899999999999999999998765677888999999999
Q ss_pred HHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q 024986 211 CYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWSC 259 (259)
Q Consensus 211 ~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~~ 259 (259)
.|.++++..|++||++.++|+|.++|.+.|...+..+..||||+.||+.
T Consensus 172 ~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~~l~~~~~~~~~~~~~~~ 220 (220)
T PLN02924 172 RFQTLRDSSWKIIDASQSIEEVEKKIREVVLDTVQRCLAGKPLSRLWSS 220 (220)
T ss_pred HHHHHhhcCEEEECCCCCHHHHHHHHHHHHHHHHHhccccCcHHHhcCC
Confidence 9999887789999999999999999999999999999999999999973
No 2
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=275.95 Aligned_cols=192 Identities=35% Similarity=0.557 Sum_probs=173.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC-CCCCHHHHHHHHHHhHHHHH-HH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ-SHLDDHTIHLLFSANRWEKR-SM 131 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~-~~~~~~~~~ll~~a~r~~~~-~~ 131 (259)
+|++|+|||+|||||||+++.|+++|...|++|+.+++|+ ++++|+.||+++.++ ..+++.+++++|+++|+++. ..
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~-~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG-GTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999 599999999998876 57899999999999999986 78
Q ss_pred HHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhccCC---CCCEEEEEeCCHHHHHhhcCCCC---CCcchH--
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGLL---APDSVLYLDIPPEKAAERGGYGG---ERYEHL-- 202 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~~~~---~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~-- 202 (259)
++|++..|.+||+|||++|++|||+ ++|++.+|+..++...+ .||++||||+||+++++|+..|+ +++|..
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~ 160 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDD 160 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence 8999999999999999999999996 68999999988765555 99999999999999999998763 567653
Q ss_pred HHHHHHHHHHHhhhC-C--CeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 203 EFQRKVAQCYQMLRD-S--SWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 203 ~~~~rv~~~y~~l~~-~--~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
++++++++.|.++++ . .+++||++.++|+|.++|.+.+.+.+..
T Consensus 161 ~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~~ 207 (208)
T COG0125 161 EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLGL 207 (208)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhcc
Confidence 589999999999875 2 4899999999999999999999887753
No 3
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=256.98 Aligned_cols=204 Identities=53% Similarity=0.937 Sum_probs=187.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
+.+|.+|+++|.|+||||||+..|.+.+...+.+...+++|.+.+.+|+.|..++.+..+++..+.+++|+|+||++...
T Consensus 2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~ 81 (208)
T KOG3327|consen 2 MIRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSL 81 (208)
T ss_pred CCCccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHH
Confidence 57899999999999999999999999998777777888999999999999999999887899999999999999999989
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
|+..+.+|.++|+|||.+|+++|..++|++.+|+.++..++++||+++||+++|+.+.+|-+.+.++||..+||+++...
T Consensus 82 i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fqekv~~~ 161 (208)
T KOG3327|consen 82 IKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQEKVLVF 161 (208)
T ss_pred HHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888899999999999999
Q ss_pred HHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 024986 212 YQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLL 256 (259)
Q Consensus 212 y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~ 256 (259)
|..+. +..|+++|++.++|+|.++|..++++.+ .++.++||..|
T Consensus 162 ~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~-~~~~~~~l~~l 208 (208)
T KOG3327|consen 162 FQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENVL-SEPIEKPLDEL 208 (208)
T ss_pred HHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHhc-cCCCCCCcccC
Confidence 99875 3689999999999999999999777665 45677887653
No 4
>PRK13976 thymidylate kinase; Provisional
Probab=100.00 E-value=1.1e-35 Score=253.58 Aligned_cols=190 Identities=27% Similarity=0.380 Sum_probs=164.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhC-C-CeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGL-G-HSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMM 132 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~-g-~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i 132 (259)
++|+|||+||||||||++.|++.|... | +.+..+++|+ ++++|+.|++++.+...+++.+..++|+++|+++. +.+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~-~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I 79 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-GTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI 79 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC-CCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999886 6 5888889998 78899999999876545888999999999999986 568
Q ss_pred HHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhc--cCCCCCEEEEEeCCHHHHHhhcCCCCCCcc--hHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEI--GLLAPDSVLYLDIPPEKAAERGGYGGERYE--HLEFQRK 207 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~--~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~r 207 (259)
+|++++|.+||+|||++|+++||+ ..|.+.+|+..++. ..+.||++||||+||+++.+|+.. +++| ..+|+++
T Consensus 80 ~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~--~~~e~~~~~~l~~ 157 (209)
T PRK13976 80 LPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADK--NGYEFMDLEFYDK 157 (209)
T ss_pred HHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcc--cchhcccHHHHHH
Confidence 999999999999999999999998 46788888877653 346899999999999999999864 4455 5799999
Q ss_pred HHHHHHhhhC---CCeEEEcC---CCC---HHHHHHHHHHHHHHHHhhhh
Q 024986 208 VAQCYQMLRD---SSWKIIDA---CQS---IEDVEKQLKEIVLDQVTACK 248 (259)
Q Consensus 208 v~~~y~~l~~---~~~~vIDa---~~s---~eev~~~I~~~i~~~l~~~~ 248 (259)
+++.|.+++. ..+++||+ +++ +|+|.++|.+.|.+.++++.
T Consensus 158 v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~~ 207 (209)
T PRK13976 158 VRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDKL 207 (209)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999864 26889998 445 99999999999999997654
No 5
>PRK13973 thymidylate kinase; Provisional
Probab=100.00 E-value=5.8e-35 Score=249.92 Aligned_cols=191 Identities=27% Similarity=0.355 Sum_probs=166.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--CCCCHHHHHHHHHHhHHHHH-H
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--SHLDDHTIHLLFSANRWEKR-S 130 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~~~~~~~~~ll~~a~r~~~~-~ 130 (259)
+|++|+|||+||||||||++.|+++|...|+.++.+++|+ +++.|+.||+++... ..+++.+..++|+++|+++. +
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~ 80 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG-GSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEE 80 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC-CCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999998 678899999987753 35788889999999999986 5
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCCC-----CCcc-
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEI---GLLAPDSVLYLDIPPEKAAERGGYGG-----ERYE- 200 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R~-----d~~e- 200 (259)
.+.|++.+|.+||+|||++|++||++. ++++.+|+..++. ..+.||++||||+|++++.+|+..|. ++++
T Consensus 81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~ 160 (213)
T PRK13973 81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK 160 (213)
T ss_pred HHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh
Confidence 689999999999999999999999985 4677778776653 45789999999999999999987663 3554
Q ss_pred -hHHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 024986 201 -HLEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 201 -~~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~ 245 (259)
..++++++.+.|.++.+ ..+++||+++++|+|.++|.+.+...+.
T Consensus 161 ~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 161 EDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 46899999999998764 3689999999999999999999998776
No 6
>PRK07933 thymidylate kinase; Validated
Probab=100.00 E-value=2.1e-35 Score=252.70 Aligned_cols=185 Identities=28% Similarity=0.430 Sum_probs=157.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC-CChHHHHHHHHHhCCC---CCCHHHHHHHHHHhHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR-TTSVGQMISAYLSNQS---HLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~-~~~~g~~ir~~l~~~~---~~~~~~~~ll~~a~r~~~~~~ 131 (259)
++|+|||+||||||||++.|+++|...|+.|..+++|.. +++.|+.+++++.+.. ..++.+.+++|+++|+++...
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~ 80 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE 80 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHH
Confidence 589999999999999999999999999999999999953 5678999999887531 236788889999999998878
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCC-C-----CCHHHHHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCCC------
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAK-G-----IDIEWCKAPEI---GLLAPDSVLYLDIPPEKAAERGGYGG------ 196 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~-g-----l~~~~~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R~------ 196 (259)
+.|++++|.+||+|||++|++||++++ + ....|+..++. ..+.||++||||+||+++.+|+..|+
T Consensus 81 I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~ 160 (213)
T PRK07933 81 LAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDADR 160 (213)
T ss_pred HHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccCCc
Confidence 999999999999999999999999754 1 23567766653 45789999999999999999987664
Q ss_pred --CCcch-HHHHHHHHHHHHhhhC----CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 197 --ERYEH-LEFQRKVAQCYQMLRD----SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 197 --d~~e~-~~~~~rv~~~y~~l~~----~~~~vIDa~~s~eev~~~I~~~i 240 (259)
|++|. .+|++++++.|.+++. ..|++||+++++|+|.++|.+.|
T Consensus 161 ~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 161 ARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 45764 7999999999998763 27899999999999999999876
No 7
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=100.00 E-value=1.1e-33 Score=236.50 Aligned_cols=176 Identities=38% Similarity=0.605 Sum_probs=150.9
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHHHHHhc
Q 024986 60 LEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMMEAKLKA 138 (259)
Q Consensus 60 ieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~~~l~~ 138 (259)
|||+||||||||++.|+++|...|+.+....+|. ++++|+.|++++......++.+..++|+++|..+. ..+.+++++
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~-~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~ 79 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPG-STPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKR 79 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESST-SSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCC-CChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999855555554 78999999999986667888899999999996654 688999999
Q ss_pred CCeEEEcccccchhhhhcCCC-CCHHHHHhhhccCC--CCCEEEEEeCCHHHHHhhcCCCCC----CcchHHHHHHHHHH
Q 024986 139 GTTLIVDRYSYSGVAFSSAKG-IDIEWCKAPEIGLL--APDSVLYLDIPPEKAAERGGYGGE----RYEHLEFQRKVAQC 211 (259)
Q Consensus 139 g~~VI~DR~~~s~~ay~~~~g-l~~~~~~~~~~~~~--~PdlvI~Ld~~~e~~~~R~~~R~d----~~e~~~~~~rv~~~ 211 (259)
|.+||+|||++|+++|+.+.+ .+.+|+..+...++ .||++|||++||+++.+|+..|+. ..+..++++++++.
T Consensus 80 g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~ 159 (186)
T PF02223_consen 80 GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREA 159 (186)
T ss_dssp TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHH
T ss_pred CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 999999999999999998754 67788877765544 999999999999999999987655 23457999999999
Q ss_pred HHhhh--CCCeEEEcCCCCHHHHHHHH
Q 024986 212 YQMLR--DSSWKIIDACQSIEDVEKQL 236 (259)
Q Consensus 212 y~~l~--~~~~~vIDa~~s~eev~~~I 236 (259)
|.++. .++|++||++.++|+|+++|
T Consensus 160 y~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 160 YLELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 99887 47999999999999999987
No 8
>PRK13974 thymidylate kinase; Provisional
Probab=100.00 E-value=9.6e-33 Score=236.03 Aligned_cols=193 Identities=31% Similarity=0.539 Sum_probs=164.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC-----eEEEEecCCCCChHHHHHHHHHhCC---CCCCHHHHHHHHHHhH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-----SVELWRFPDRTTSVGQMISAYLSNQ---SHLDDHTIHLLFSANR 125 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~-----~v~~~~~p~~~~~~g~~ir~~l~~~---~~~~~~~~~ll~~a~r 125 (259)
+|.+|+|+|+||||||||++.|++.|...|. .++.+++|. ++++|+.|++++.+. ..+++.+..++|+++|
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr 80 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPG-GTLLGKSLRELLLDTSKDNSPSPLAELLLYAADR 80 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCC-CCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999987664 667788887 789999999998643 2467888899999999
Q ss_pred HHHH-HHHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCCC-CCc
Q 024986 126 WEKR-SMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEI---GLLAPDSVLYLDIPPEKAAERGGYGG-ERY 199 (259)
Q Consensus 126 ~~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R~-d~~ 199 (259)
++++ ..++|++..|.+||+|||++|+++|++ .++++.+|+..++. ..+.||++||||+|++++.+|+..|. |++
T Consensus 81 ~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~ 160 (212)
T PRK13974 81 AQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRI 160 (212)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCch
Confidence 9997 467999999999999999999999987 57888888877753 34579999999999999999988764 445
Q ss_pred ch--HHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 024986 200 EH--LEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 200 e~--~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~~ 247 (259)
+. .+|++++...|..+.+ ..|++||+++++++|.++|.+.|...+..+
T Consensus 161 e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~~ 211 (212)
T PRK13974 161 EAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK 211 (212)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhhc
Confidence 53 5899999999988764 578999999999999999999999876654
No 9
>PRK00698 tmk thymidylate kinase; Validated
Probab=100.00 E-value=4.2e-31 Score=223.31 Aligned_cols=190 Identities=33% Similarity=0.505 Sum_probs=160.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC-CCCCCHHHHHHHHHHhHHHHH-HH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN-QSHLDDHTIHLLFSANRWEKR-SM 131 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~-~~~~~~~~~~ll~~a~r~~~~-~~ 131 (259)
+|++|+|+|+|||||||+++.|++.|...|+.+...++|. +++.|+.++.++.. ...+.+.+..++|+++|+++. ..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPG-GTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEV 80 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCC-CChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998888888888887 67889999998874 345677777888888998875 56
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhcc---CCCCCEEEEEeCCHHHHHhhcCCCC--CCcc--hHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEIG---LLAPDSVLYLDIPPEKAAERGGYGG--ERYE--HLE 203 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~~---~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e--~~~ 203 (259)
+.+.+.+|.+||+|||++|.++|+++ .+.+.+|+..+... .+.||++|||++|++++.+|+..|+ ++++ ..+
T Consensus 81 i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~ 160 (205)
T PRK00698 81 IKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLD 160 (205)
T ss_pred HHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHH
Confidence 78888899999999999999999875 36777888776533 3789999999999999999998775 3343 468
Q ss_pred HHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 204 ~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
|++++...|..+.+ ..+++||++++++++.++|.+.|.+.+
T Consensus 161 ~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 161 FFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 89999888988753 468999999999999999999998765
No 10
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.97 E-value=4.4e-30 Score=215.88 Aligned_cols=182 Identities=40% Similarity=0.601 Sum_probs=152.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--CCCCHHHHHHHHHHhHHHHH-H
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--SHLDDHTIHLLFSANRWEKR-S 130 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~~~~~~~~~ll~~a~r~~~~-~ 130 (259)
+|++|+|+|+|||||||+++.|+++|...|+.+....+|. ++++|+.+++++... ..+.+.+..++|+++|.+.. +
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~ 80 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG-GTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLED 80 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999988788886 678899999985532 34566677788888887765 5
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhccCCC--CCEEEEEeCCHHHHHhhcCCCCC----CcchHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGLLA--PDSVLYLDIPPEKAAERGGYGGE----RYEHLE 203 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~~~~~--PdlvI~Ld~~~e~~~~R~~~R~d----~~e~~~ 203 (259)
.+.+.+.+|.+||+|||++|.++|+. .++.+.+|+..+...++. ||++|||++|++++.+|+..|+. .++..+
T Consensus 81 ~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~ 160 (195)
T TIGR00041 81 KIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLD 160 (195)
T ss_pred HHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHH
Confidence 67888889999999999999999986 467777888777655544 99999999999999999887643 134578
Q ss_pred HHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHH
Q 024986 204 FQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQL 236 (259)
Q Consensus 204 ~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I 236 (259)
+++++.+.|.++++ .++++||+++++|+|+++|
T Consensus 161 ~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 161 FFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 89999999998874 5799999999999999875
No 11
>PRK13975 thymidylate kinase; Provisional
Probab=99.97 E-value=1.8e-28 Score=206.28 Aligned_cols=184 Identities=32% Similarity=0.488 Sum_probs=152.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA 134 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~ 134 (259)
|++|+|+|+|||||||+++.|+++|+.. ...+|. ++.+|+.+++++... .+++.+..++|+++|++++..+.+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~-----~~~~~~-~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~~ 74 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF-----WTCEPT-DGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIEE 74 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-----eeECCC-CChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999642 234554 567899999987754 567778888999999988777777
Q ss_pred HHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-CCcchHHHHHHHHHHHH
Q 024986 135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-ERYEHLEFQRKVAQCYQ 213 (259)
Q Consensus 135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-d~~e~~~~~~rv~~~y~ 213 (259)
.+.. ..||+|||++|+++|+.+.|++.+|+..++...+.||++|||++|++++.+|+..|+ +.++..++++++.+.|.
T Consensus 75 ~~~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~ 153 (196)
T PRK13975 75 DLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYL 153 (196)
T ss_pred HHcC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 7765 689999999999999987788888877666666789999999999999999998774 23556788889999898
Q ss_pred hhhC-------CCeEEEcCC-CCHHHHHHHHHHHHHHHHhh
Q 024986 214 MLRD-------SSWKIIDAC-QSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 214 ~l~~-------~~~~vIDa~-~s~eev~~~I~~~i~~~l~~ 246 (259)
++.. ..+++||++ +++++++++|.+.|...+++
T Consensus 154 ~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~~ 194 (196)
T PRK13975 154 ELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIPD 194 (196)
T ss_pred HHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCCc
Confidence 7642 358999985 89999999999999887764
No 12
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.96 E-value=8.8e-28 Score=201.16 Aligned_cols=185 Identities=32% Similarity=0.470 Sum_probs=150.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--CCCCHHHHHHHHHHhHHHHH-HHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--SHLDDHTIHLLFSANRWEKR-SMM 132 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~~~~~~~~~ll~~a~r~~~~-~~i 132 (259)
++|+|+|+|||||||+++.|++.|...|+.+....+|. ++..|+.+++++... ..+.+....++++++|+... +.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 79 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG-GTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVI 79 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998888887 556788999987754 24566777778888888775 556
Q ss_pred HHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHh---hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc----chHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKA---PEIGLLAPDSVLYLDIPPEKAAERGGYGGERY----EHLEF 204 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~---~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~----e~~~~ 204 (259)
.+.+..|.+||+|||++++++|+.. .+...+|+.. +....+.||++|||++|++++.+|+..|++.. +..+|
T Consensus 80 ~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~ 159 (200)
T cd01672 80 KPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEF 159 (200)
T ss_pred HHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHH
Confidence 7778889999999999999999874 3344444443 34455789999999999999999998775432 23688
Q ss_pred HHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 205 QRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 205 ~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
++++...|..+.. .++++||++.++|++.++|.+.|.
T Consensus 160 ~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 160 HERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 9999999988654 468999999999999999998875
No 13
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.94 E-value=1.5e-25 Score=192.58 Aligned_cols=180 Identities=17% Similarity=0.242 Sum_probs=130.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCe-----EEEEecCCCCChHHHH------HHHHHhCCC---CCCHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHS-----VELWRFPDRTTSVGQM------ISAYLSNQS---HLDDHTIHLLFS 122 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~-----v~~~~~p~~~~~~g~~------ir~~l~~~~---~~~~~~~~ll~~ 122 (259)
+|+|||++|||||||++.|+++|...++. +....+|. ++.+++. +++++.++. .++..+..+++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~- 78 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGD-GKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY- 78 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhcccccccc-ccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH-
Confidence 59999999999999999999999653221 11123333 3334432 666766554 34444444444
Q ss_pred HhHHHHH-HHHHHHHhcCCeEEEcccccchhhhhcC---CCC----CHHHHHhhh----ccCCCCCEEEEEeCCHHHHHh
Q 024986 123 ANRWEKR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA---KGI----DIEWCKAPE----IGLLAPDSVLYLDIPPEKAAE 190 (259)
Q Consensus 123 a~r~~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~---~gl----~~~~~~~~~----~~~~~PdlvI~Ld~~~e~~~~ 190 (259)
++|+++. ..+.+.+..|.+||+|||++|+++|+.+ .|. +.+|+..+. ..++.||++|||++||+++.+
T Consensus 79 ~~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~ 158 (219)
T cd02030 79 SSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQK 158 (219)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHH
Confidence 7788875 5677888889999999999999999742 232 234444332 345889999999999999999
Q ss_pred hcCCCCCCcc---hHHHHHHHHHHHHhhh-----C-CCeEEEcCC--CCHHHHHHHHHH
Q 024986 191 RGGYGGERYE---HLEFQRKVAQCYQMLR-----D-SSWKIIDAC--QSIEDVEKQLKE 238 (259)
Q Consensus 191 R~~~R~d~~e---~~~~~~rv~~~y~~l~-----~-~~~~vIDa~--~s~eev~~~I~~ 238 (259)
|+..|+...+ +.+|++++.+.|.++. . .++++||++ .++++|+++|..
T Consensus 159 Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 159 RIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 9987764433 4789999999998763 2 489999998 899999988764
No 14
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.87 E-value=9.2e-22 Score=165.23 Aligned_cols=167 Identities=26% Similarity=0.402 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC-ChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH-HHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT-TSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS-MMEA 134 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~-~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~-~i~~ 134 (259)
+|+|+|++||||||+++.|++++ |+ ..+.+|... ...+..+++++.++..+ ....++++.++|+++.. .+.+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~---~~--~~~~Ep~~~~~~~~~~l~~~~~~~~~~-~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL---GY--EVVPEPVEPDVEGNPFLEKFYEDPKRW-AFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CC--ccccccccccCCCCCCHHHHHhCHHhc-cHHHHHHHHHHHHHHHHHHHhh
Confidence 59999999999999999999986 33 234666310 01123355665543222 23345556677877753 3333
Q ss_pred HHhcCCeEEEcccccchhhhhcC---CC-C---CHHHHHh----hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc---
Q 024986 135 KLKAGTTLIVDRYSYSGVAFSSA---KG-I---DIEWCKA----PEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE--- 200 (259)
Q Consensus 135 ~l~~g~~VI~DR~~~s~~ay~~~---~g-l---~~~~~~~----~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e--- 200 (259)
++.|.+||+|||++|+++|+.. .| . +.+++.. +....+.||++|||++|++++.+|+..|+...|
T Consensus 75 -~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~ 153 (193)
T cd01673 75 -LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQGI 153 (193)
T ss_pred -cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhcC
Confidence 6689999999999999988642 12 1 2333322 233457899999999999999999987754433
Q ss_pred hHHHHHHHHHHHHhhhC------CCeEEEcCCC-CHH
Q 024986 201 HLEFQRKVAQCYQMLRD------SSWKIIDACQ-SIE 230 (259)
Q Consensus 201 ~~~~~~rv~~~y~~l~~------~~~~vIDa~~-s~e 230 (259)
..+|++++...|..+.. .++++||++. +++
T Consensus 154 ~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~~ 190 (193)
T cd01673 154 PLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEADIE 190 (193)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCCCEEEEECCccccc
Confidence 36899999999988653 4789999975 544
No 15
>PHA03132 thymidine kinase; Provisional
Probab=99.83 E-value=1.4e-19 Score=172.76 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=113.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC-----ChHHHHHHHHHhCC--CCCCHHHHH--------
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT-----TSVGQMISAYLSNQ--SHLDDHTIH-------- 118 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~-----~~~g~~ir~~l~~~--~~~~~~~~~-------- 118 (259)
++++|+|||++||||||+++.|++.+ |..++.+.||... +..++.|++.+... +.++.....
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l---g~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA 332 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL---GDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFA 332 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh---CCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHh
Confidence 58999999999999999999999999 6788888999732 13466676665432 234332222
Q ss_pred --HHHHHhHHHHH----HHHHHHHhcCCeEEEcccccchhhhh-cC---CC-CCHH-HHHhhhc-cCCCCCEEEEEeCCH
Q 024986 119 --LLFSANRWEKR----SMMEAKLKAGTTLIVDRYSYSGVAFS-SA---KG-IDIE-WCKAPEI-GLLAPDSVLYLDIPP 185 (259)
Q Consensus 119 --ll~~a~r~~~~----~~i~~~l~~g~~VI~DR~~~s~~ay~-~~---~g-l~~~-~~~~~~~-~~~~PdlvI~Ld~~~ 185 (259)
++++++|.++. ..+.+.+..|.+||+|||++|.++|. .. .| ++.+ ++..+.. ..+.||++|||++++
T Consensus 333 ~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~p 412 (580)
T PHA03132 333 TPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNS 412 (580)
T ss_pred hHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCH
Confidence 23446776653 23445667899999999999998733 21 23 2333 2332222 235699999999999
Q ss_pred HHHHhhcCCCCCCcc---hHHHHHHHHHHHHhhh
Q 024986 186 EKAAERGGYGGERYE---HLEFQRKVAQCYQMLR 216 (259)
Q Consensus 186 e~~~~R~~~R~d~~e---~~~~~~rv~~~y~~l~ 216 (259)
+++++|+..|++.+| +.+|++++++.|..+.
T Consensus 413 e~alkRIkkRgR~~E~~IdleYL~rLre~Y~~l~ 446 (580)
T PHA03132 413 EENLRRVKKRGRKEEKGINLTYLKELNWAYHAVY 446 (580)
T ss_pred HHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHH
Confidence 999999998866565 4689999999998764
No 16
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.76 E-value=7.3e-17 Score=134.24 Aligned_cols=168 Identities=16% Similarity=0.209 Sum_probs=107.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK 128 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~ 128 (259)
+.++|+|+|++||||||+++.|++.++ +..+.. .+...+++.+..++.++..+... +....... .
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------l 71 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLV-PLDTVLDL------L 71 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCC-CHHHHHHH------H
Confidence 457899999999999999999999884 433321 11111344556666666544322 21111100 0
Q ss_pred HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hHH
Q 024986 129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLE 203 (259)
Q Consensus 129 ~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~~ 203 (259)
...+.+.+..|..||+|+|+.+. .+ ...+......||++|||++|++++.+|+..|. ++.+ ...
T Consensus 72 ~~~~~~~~~~~~~~i~dg~~~~~--~q---------~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~ 140 (188)
T TIGR01360 72 KDAMVAALGTSKGFLIDGYPREV--KQ---------GEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKT 140 (188)
T ss_pred HHHHHcccCcCCeEEEeCCCCCH--HH---------HHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHH
Confidence 12334445668889999987532 11 12222344679999999999999999997663 2332 245
Q ss_pred HHHHHHHHHHhh-------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQML-------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 204 ~~~rv~~~y~~l-------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+.+++...|.+. . ...+++||+++++++|.++|...++.
T Consensus 141 ~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 141 IKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 666666655432 1 23688999999999999999998763
No 17
>PRK14532 adenylate kinase; Provisional
Probab=99.74 E-value=3e-16 Score=131.21 Aligned_cols=167 Identities=17% Similarity=0.122 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
.|+|.|+|||||||+++.|+++++ +..+.. +. -..+++.|..+++++..+....+....-++ . ..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~------~~ 71 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALI-E------ER 71 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHH-H------HH
Confidence 489999999999999999999885 333321 11 012345677777777655433332211111 0 01
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEFQ 205 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~~~~ 205 (259)
+. ....+..+|+|+||.+.- | .+.+.. +......||++|+|++|++++.+|+..|. ++.+ ...+.
T Consensus 72 ~~-~~~~~~g~vldg~pr~~~--q------~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~ 142 (188)
T PRK14532 72 LP-EAEAAGGAIFDGFPRTVA--Q------AEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFV 142 (188)
T ss_pred Hh-CcCccCcEEEeCCCCCHH--H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHH
Confidence 11 122356788899986431 1 122222 22334579999999999999999987662 3332 24567
Q ss_pred HHHHHHHHhhh--------CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLR--------DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 206 ~rv~~~y~~l~--------~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+++...|.+.. ...++.||+++++++|+++|.+.+..
T Consensus 143 ~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 187 (188)
T PRK14532 143 TRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALEG 187 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 77766665431 23588999999999999999998754
No 18
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.73 E-value=1.4e-16 Score=133.74 Aligned_cols=179 Identities=20% Similarity=0.259 Sum_probs=113.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
..++|+|+|+.|+||||+++.|+++|+. .+. -|...++++ +..++.++..++. ..++.|..+|+.. .+
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~---~~~--~E~vednp~---L~~FY~d~~~yaf-~~QiyFL~~Rfk~---~k 70 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGF---KVF--YELVEDNPF---LDLFYEDPERYAF-LLQIYFLLNRFKK---IK 70 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCC---cee--eecccCChH---HHHHHHhHHHhhH-HHHHHHHHHHHHH---HH
Confidence 4689999999999999999999999974 222 222223443 4455665444433 2445677777663 34
Q ss_pred HHHhcCCeEEEcccccchh-hhhc---CCCC-C-H------HHHHhh---hccCC-CCCEEEEEeCCHHHHHhhcCCCCC
Q 024986 134 AKLKAGTTLIVDRYSYSGV-AFSS---AKGI-D-I------EWCKAP---EIGLL-APDSVLYLDIPPEKAAERGGYGGE 197 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~-ay~~---~~gl-~-~------~~~~~~---~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~d 197 (259)
..+..+. .|.||+++... .+.. ..|. . . +.+..+ ....+ .||+.||||++.++.++|+..|+.
T Consensus 71 ~~~~~~~-~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR 149 (216)
T COG1428 71 KALSDKN-NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGR 149 (216)
T ss_pred HHhcccc-cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 5555555 78899888665 3332 1222 2 1 112221 12345 999999999999999999998887
Q ss_pred Ccc------hHHHHHHHHHHHHhhhC----CCeEEEcCC----CCHHHHHHHHHHHHHHHHh
Q 024986 198 RYE------HLEFQRKVAQCYQMLRD----SSWKIIDAC----QSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 198 ~~e------~~~~~~rv~~~y~~l~~----~~~~vIDa~----~s~eev~~~I~~~i~~~l~ 245 (259)
.+| ..+|++.+...|..|.. .+.+.||++ ..-++-.+.|+..|.+.+.
T Consensus 150 ~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~~~ 211 (216)
T COG1428 150 PFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAKLK 211 (216)
T ss_pred CcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHHHHHh
Confidence 776 24799999999998753 355666642 1223334444444554443
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.72 E-value=2.6e-16 Score=130.83 Aligned_cols=165 Identities=19% Similarity=0.273 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFP-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA 134 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~ 134 (259)
+|+|.|+|||||||+|+.|+++++...+++. .++.. ..+++.|+.+++++..+...++....- .+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------ll~~ 69 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVK-----------LLKN 69 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHH-----------HHHH
Confidence 5899999999999999999999953222210 11111 113455666777765544333322110 1111
Q ss_pred HHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccc-hHHHHHHH
Q 024986 135 KLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYE-HLEFQRKV 208 (259)
Q Consensus 135 ~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e-~~~~~~rv 208 (259)
.+. .+..+|+|+||.+.--. ..+..+......||++|||++|++++.+|+..|+. +.+ +.+..++.
T Consensus 70 ~~~~~~~~~~vlDg~p~~~~q~--------~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r 141 (183)
T TIGR01359 70 AIQADGSKKFLIDGFPRNEENL--------EAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKR 141 (183)
T ss_pred HHhccCCCcEEEeCCCCCHHHH--------HHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHH
Confidence 221 15678999998753211 11222222335699999999999999999987642 222 34444444
Q ss_pred HHHHHhh--------hC-CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 209 AQCYQML--------RD-SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 209 ~~~y~~l--------~~-~~~~vIDa~~s~eev~~~I~~~i 240 (259)
.+.|.+. .. ..+++||+++++++|.++|.+.+
T Consensus 142 ~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 142 FRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4455432 12 35899999999999999998865
No 20
>PRK13808 adenylate kinase; Provisional
Probab=99.71 E-value=5.2e-16 Score=140.13 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA 134 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~ 134 (259)
-|+|.|+||||||||+..|++.|+-..+++- +++ +...+++.|..+++++.+++.+++....-++ .++ +..
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li-~e~------l~~ 74 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGII-SDR------IEQ 74 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHH-HHH------Hhc
Confidence 4889999999999999999999953222210 011 1122456677777777665544332211111 111 111
Q ss_pred HHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC---------CCcc--hH
Q 024986 135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG---------ERYE--HL 202 (259)
Q Consensus 135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---------d~~e--~~ 202 (259)
. .....+|+|+||.+.- |. +.+.. +......||++|+||+|++++++|+..|. .+.+ ..
T Consensus 75 ~-~~~~G~ILDGFPRt~~--QA------~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E 145 (333)
T PRK13808 75 P-DAANGFILDGFPRTVP--QA------EALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPE 145 (333)
T ss_pred c-cccCCEEEeCCCCCHH--HH------HHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHH
Confidence 1 1123478899987531 11 22222 22334579999999999999999987651 2232 23
Q ss_pred HHHHHHHHHHHhhh--------C-CCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 024986 203 EFQRKVAQCYQMLR--------D-SSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248 (259)
Q Consensus 203 ~~~~rv~~~y~~l~--------~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~ 248 (259)
.+.+|+ ..|.+.. + ..++.||+++++|+|+++|...|...+..+.
T Consensus 146 ~i~kRL-~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~~~ 199 (333)
T PRK13808 146 VLAKRL-ASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAANA 199 (333)
T ss_pred HHHHHH-HHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCCCc
Confidence 445555 5565431 1 3589999999999999999999998776554
No 21
>PLN02200 adenylate kinase family protein
Probab=99.70 E-value=5.7e-16 Score=134.41 Aligned_cols=170 Identities=14% Similarity=0.222 Sum_probs=104.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW 126 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~ 126 (259)
+..+.+|+|.|+|||||||+|+.|+++++ +..+.. ++ ....++.+..+.+++..+...++....-
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~------- 109 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVK------- 109 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHH-------
Confidence 34568899999999999999999999884 322211 11 1112334445555544433222211100
Q ss_pred HHHHHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-CCcc-hH
Q 024986 127 EKRSMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-ERYE-HL 202 (259)
Q Consensus 127 ~~~~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-d~~e-~~ 202 (259)
.+...+. .+..+|+|+|+.+.--+ ..+.... ...||++|+|++|++++.+|+..|+ ++.+ +.
T Consensus 110 ----~l~~~l~~~~~~~~ILDG~Prt~~q~--------~~l~~~~--~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~ 175 (234)
T PLN02200 110 ----LIQKEMESSDNNKFLIDGFPRTEENR--------IAFERII--GAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNI 175 (234)
T ss_pred ----HHHHHHhcCCCCeEEecCCcccHHHH--------HHHHHHh--ccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCH
Confidence 1111111 23458999998642111 1111111 2369999999999999999998764 3333 34
Q ss_pred HHHHHHHHHHHhhh--------C-CCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 024986 203 EFQRKVAQCYQMLR--------D-SSWKIIDACQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 203 ~~~~rv~~~y~~l~--------~-~~~~vIDa~~s~eev~~~I~~~i~~~l~ 245 (259)
+++++..+.|.+.. + ..++.||+++++++|++.|.+.+..++.
T Consensus 176 e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 176 DTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 55555556665431 1 3689999999999999999998877654
No 22
>PRK14527 adenylate kinase; Provisional
Probab=99.70 E-value=1.4e-15 Score=127.84 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=103.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR 129 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~ 129 (259)
..+|++|+|.|++||||||+++.|+++++...++.- .++ ....+++.+..++.++..+...+.....
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~----------- 71 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELIL----------- 71 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHH-----------
Confidence 457899999999999999999999999965444321 111 1111345566666655544322221100
Q ss_pred HHHHHHHhc--CCeEEEcccccchhhhhcCCCCCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccc-hH
Q 024986 130 SMMEAKLKA--GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGGYGGE---RYE-HL 202 (259)
Q Consensus 130 ~~i~~~l~~--g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e-~~ 202 (259)
..+...+.+ +..+|+|+|+.+.- + .+++..+. .....++.+|+|++|++++.+|+..|.. +.+ +.
T Consensus 72 ~l~~~~l~~~~~~~~VlDGfpr~~~--q------~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~ 143 (191)
T PRK14527 72 ALIRDELAGMEPVRVIFDGFPRTLA--Q------AEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNE 143 (191)
T ss_pred HHHHHHHhcCCCCcEEEcCCCCCHH--H------HHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCH
Confidence 111222222 34588999885321 1 12232222 2235688999999999999999987631 222 23
Q ss_pred HHHHHHHHHHHhhh--------C-CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQMLR--------D-SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 203 ~~~~rv~~~y~~l~--------~-~~~~vIDa~~s~eev~~~I~~~i 240 (259)
+.+.+..+.|.+.. + ..++.||+++++++|+++|...+
T Consensus 144 ~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 144 ETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 44444344454321 1 46899999999999999998865
No 23
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.69 E-value=1.1e-15 Score=132.53 Aligned_cols=190 Identities=21% Similarity=0.250 Sum_probs=128.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-----EEe------------cCCCCChHHHHHHHHHhCCCCCCHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-----LWR------------FPDRTTSVGQMISAYLSNQSHLDDHT 116 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-----~~~------------~p~~~~~~g~~ir~~l~~~~~~~~~~ 116 (259)
+.++|+++|++|||||++|+.|+++|+...++.. ..+ +|. .--..-|+.++.++..-....
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~--~cr~~di~~Fy~dPS~dlsa~ 147 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPA--RCRLPDISMFYKDPSGDLSAA 147 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCc--ccCchhHHHhccCCCccHHHH
Confidence 5799999999999999999999999987666522 111 111 000122455555553111222
Q ss_pred HHHHHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcC---CCC-CH------HHHHhh-hccCCCCCEEEEEeCC
Q 024986 117 IHLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSA---KGI-DI------EWCKAP-EIGLLAPDSVLYLDIP 184 (259)
Q Consensus 117 ~~ll~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~---~gl-~~------~~~~~~-~~~~~~PdlvI~Ld~~ 184 (259)
.+......|+.+ ++.+...|..|+.|+++|+++|.++|..+ .|- .. +.+++- ...+..|.++||||+|
T Consensus 148 ~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P 227 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP 227 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence 233333445555 47777888999999999999999998653 121 11 122211 1346789999999999
Q ss_pred HHHHHhhcCCCCCCcc----hHHHHHHHHHHHHh--hhC----CCeEEEcC--CCCHHHHHHHHHHHHHHHHh
Q 024986 185 PEKAAERGGYGGERYE----HLEFQRKVAQCYQM--LRD----SSWKIIDA--CQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 185 ~e~~~~R~~~R~d~~e----~~~~~~rv~~~y~~--l~~----~~~~vIDa--~~s~eev~~~I~~~i~~~l~ 245 (259)
.+.+.++|+.|++.+| ...|++.+.+.|++ +.+ ..+..-|. .++.+.|++.|..+=-+.++
T Consensus 228 v~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErldfd~fe 300 (393)
T KOG3877|consen 228 VNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIERLDFDFFE 300 (393)
T ss_pred cHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhhhcccccc
Confidence 9999999999887766 35788999888876 222 45666775 37899999999875444443
No 24
>PRK14531 adenylate kinase; Provisional
Probab=99.69 E-value=2.1e-15 Score=125.98 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
+.|+|.|+|||||||+++.|+++++...+++ ..++ +-..+++.|+.++.++..+...++....-++ . ..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~---~----~~l~ 75 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIV---E----SQLK 75 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHH---H----HHHh
Confidence 3589999999999999999999985433322 1111 1112456677777776655433322111110 0 1111
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH-HHHHHHHHH
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL-EFQRKVAQC 211 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~-~~~~rv~~~ 211 (259)
. . .+..+|+|+||.+. .|. ..+.. +......|+.+|+|++|++++.+|+..|+..-++. .+.+|+ +.
T Consensus 76 ~-~-~~~g~ilDGfpr~~--~q~------~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl-~~ 144 (183)
T PRK14531 76 A-L-NSGGWLLDGFPRTV--AQA------EALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRL-EV 144 (183)
T ss_pred h-c-cCCcEEEeCCCCCH--HHH------HHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHH-HH
Confidence 1 1 23446779999763 221 11222 22233458999999999999999998763211122 233333 22
Q ss_pred HHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 212 YQML--------R-DSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 212 y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
|.+. . ...++.||+++++++|+++|.+.+
T Consensus 145 y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 145 YREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 3221 1 246899999999999999998865
No 25
>PLN02842 nucleotide kinase
Probab=99.68 E-value=1.2e-15 Score=143.99 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=111.5
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhCCCeEE-E-EecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHh
Q 024986 60 LEGLDRCGKTSQCSRLLSYLEGLGHSVE-L-WRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLK 137 (259)
Q Consensus 60 ieG~dGSGKSTla~~L~~~l~~~g~~v~-~-~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l~ 137 (259)
|+|+|||||||||+.|+++++...+++- . ..+...++++|+.|++++.++ .+.+......+.+++..+ +...
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G-~lvPdeiv~~ll~drl~~-----~~~~ 75 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSG-RLVPDEIVIAMVTGRLSR-----EDAK 75 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhC-----cccc
Confidence 7899999999999999999954333211 1 122223678999999998765 344444444444555432 1122
Q ss_pred cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------C--------------
Q 024986 138 AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------E-------------- 197 (259)
Q Consensus 138 ~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d-------------- 197 (259)
.+. +|+|+|+.+.. .+..++.....||++|+||+|++++.+|+..|. .
T Consensus 76 ~~G-~ILDGfPRt~~-----------Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~ 143 (505)
T PLN02842 76 EKG-WLLDGYPRSFA-----------QAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEI 143 (505)
T ss_pred CCc-EEEeCCCCcHH-----------HHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCcccc
Confidence 222 55599988632 122233345679999999999999999976541 0
Q ss_pred ------Ccc-hH-HHHHHHHHHHHhhh-------CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 024986 198 ------RYE-HL-EFQRKVAQCYQMLR-------DSSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248 (259)
Q Consensus 198 ------~~e-~~-~~~~rv~~~y~~l~-------~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~ 248 (259)
|.+ +. .+.+|+ ..|.+.. ...++.||+++++++|+++|.+.|.+++.+++
T Consensus 144 ~~rL~~R~DD~eE~IkkRL-~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~ 208 (505)
T PLN02842 144 KARLITRPDDTEEKVKARL-QIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDAT 208 (505)
T ss_pred ccccccCCCCCHHHHHHHH-HHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhh
Confidence 111 12 344444 4454422 13578899999999999999999999888766
No 26
>PRK02496 adk adenylate kinase; Provisional
Probab=99.67 E-value=2.2e-15 Score=125.64 Aligned_cols=166 Identities=21% Similarity=0.216 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+.|+|.|++||||||+++.|++.++. ..+.. + ....+++.|..++.++..+....+....-+ ..+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~---~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~-l~~------ 71 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHI---PHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDL-VQE------ 71 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC---cEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHH-HHH------
Confidence 45899999999999999999999853 22221 1 111134455556666554432322211100 011
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVA 209 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~ 209 (259)
.+... .....+|+|+|+.+..-. ..+.... .....||++|+|++|++++.+|+..|+...+..+++++..
T Consensus 72 ~l~~~-~~~~g~vldGfPr~~~q~--------~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~ 142 (184)
T PRK02496 72 RLQQP-DAANGWILDGFPRKVTQA--------AFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRL 142 (184)
T ss_pred HHhCc-CccCCEEEeCCCCCHHHH--------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 11110 112357889998643111 1222221 2235799999999999999999987643323445666666
Q ss_pred HHHHh----h---h-C-CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 210 QCYQM----L---R-D-SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 210 ~~y~~----l---~-~-~~~~vIDa~~s~eev~~~I~~~i 240 (259)
+.|.+ + . + ..++.||+++++++|.++|.+.|
T Consensus 143 ~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 143 EVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 66655 1 1 1 46899999999999999999876
No 27
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.67 E-value=1.4e-15 Score=124.84 Aligned_cols=170 Identities=21% Similarity=0.243 Sum_probs=110.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EE-ecCCC-CChHHHHHHHHHhCCCCCCHH--HHHHHHHHhHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LW-RFPDR-TTSVGQMISAYLSNQSHLDDH--TIHLLFSANRW 126 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~-~~p~~-~~~~g~~ir~~l~~~~~~~~~--~~~ll~~a~r~ 126 (259)
..++++|.|.|+|||||.|||.++++.+...++++- ++ .+... ++..|..|++++.++. +.|. ...++..
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~-iVP~ei~~~LL~~---- 79 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGD-LVPVEITLSLLEE---- 79 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCC-cCcHHHHHHHHHH----
Confidence 357899999999999999999999999964333321 11 22222 6778899999888764 4332 2222211
Q ss_pred HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCC-CCCEEEEEeCCHHHHHhhcCCCCC---Cc-ch
Q 024986 127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL-APDSVLYLDIPPEKAAERGGYGGE---RY-EH 201 (259)
Q Consensus 127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~d---~~-e~ 201 (259)
.+..... .+..++|+||... +....++.... .|++++|+|++.|++++|+..|+. |- ++
T Consensus 80 ----am~~~~~-~~~fLIDGyPR~~-----------~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn 143 (195)
T KOG3079|consen 80 ----AMRSSGD-SNGFLIDGYPRNV-----------DQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDN 143 (195)
T ss_pred ----HHHhcCC-CCeEEecCCCCCh-----------HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCc
Confidence 1222112 1338889998632 33334444444 699999999999999999876532 11 12
Q ss_pred HHHHHHHHHHHHhh-------hC--CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 202 LEFQRKVAQCYQML-------RD--SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 202 ~~~~~rv~~~y~~l-------~~--~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+..++..+.|... .+ ..++.||++.++++|+++++.+++.
T Consensus 144 ~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 144 EESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred hHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 33333333444332 11 4788999999999999999998875
No 28
>PRK06762 hypothetical protein; Provisional
Probab=99.64 E-value=1.6e-14 Score=118.30 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=96.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHh-CCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLS-NQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~-~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
+++|+|.|++||||||+++.|++++. ..+..++ .+.++..+. ............+. ..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~--------~D~~r~~l~~~~~~~~~~~~~~~~--------~~~~ 62 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVS--------QDVVRRDMLRVKDGPGNLSIDLIE--------QLVR 62 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEec--------HHHHHHHhccccCCCCCcCHHHHH--------HHHH
Confidence 67999999999999999999999983 2333332 234444222 11111111111111 1223
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-chHHHHHHHHHHH
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-EHLEFQRKVAQCY 212 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~~~~~~rv~~~y 212 (259)
..+..|..||+|...... .|. +++..+......|..+|||++|++++.+|...|+... .+.+.+++..+..
T Consensus 63 ~~~~~g~~vild~~~~~~-~~~-------~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~ 134 (166)
T PRK06762 63 YGLGHCEFVILEGILNSD-RYG-------PMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPH 134 (166)
T ss_pred HHHhCCCEEEEchhhccH-hHH-------HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhc
Confidence 446678899999764322 121 3344444445568899999999999999998775421 2233333322222
Q ss_pred HhhhCCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 213 QMLRDSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 213 ~~l~~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
..+.....++++++.++++|+++|...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 135 DTLGVIGETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred CCcCCCCeEEecCCCCHHHHHHHHHHHh
Confidence 2222245666677899999999998865
No 29
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.64 E-value=8.3e-15 Score=124.90 Aligned_cols=165 Identities=22% Similarity=0.247 Sum_probs=97.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
|+|.|+|||||||+|+.|+++++...+++- .++ +....++.|..+++++..+...++....-+ .. +.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l-~~------~~i~~~ 74 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQL-VK------ERLTQN 74 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHH-HH------HHHhcC
Confidence 789999999999999999998853222211 111 112235567777777665543333211100 00 111111
Q ss_pred HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCC-CCCEEEEEeCCHHHHHhhcCCCC------------------
Q 024986 136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL-APDSVLYLDIPPEKAAERGGYGG------------------ 196 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~------------------ 196 (259)
...+..+|+|+|+.+.- ....+..... .||++|+|++|.+++.+|+..|.
T Consensus 75 ~~~~~~~ilDGfPrt~~-----------Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~ 143 (210)
T TIGR01351 75 QDNENGFILDGFPRTLS-----------QAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKV 143 (210)
T ss_pred cccCCcEEEeCCCCCHH-----------HHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCcc
Confidence 11245688999886421 1222222233 69999999999999999987652
Q ss_pred ------------CCcc-hHHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 197 ------------ERYE-HLEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 197 ------------d~~e-~~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
.|.+ +.+..++..+.|.+. . ...++.||+++++++|++.|.+.|
T Consensus 144 ~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 144 PGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 0111 223333223334331 1 135889999999999999999875
No 30
>PRK14529 adenylate kinase; Provisional
Probab=99.63 E-value=4.1e-14 Score=121.63 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA 134 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~ 134 (259)
-|+|.|+|||||||+++.|+++++-.++++- .+++ ...+++.|+.+++++..+..+......-+ ..++ +..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~l-v~~~------l~~ 74 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPM-ILET------LKQ 74 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHH-HHHH------Hhc
Confidence 4899999999999999999999976655432 2332 23367889999999876643333221111 1111 111
Q ss_pred HHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC-----------------
Q 024986 135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG----------------- 196 (259)
Q Consensus 135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----------------- 196 (259)
. . ...+|+|+||.+.- |. +.+.. +......||.+|+|++|.+++.+|+..|.
T Consensus 75 ~-~-~~g~iLDGfPRt~~--Qa------~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p 144 (223)
T PRK14529 75 D-G-KNGWLLDGFPRNKV--QA------EKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAI 144 (223)
T ss_pred c-C-CCcEEEeCCCCCHH--HH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCC
Confidence 1 1 34588999998532 21 22222 22223579999999999999999987651
Q ss_pred ---------------CCcch--H-HHHHHHHH-------------HHHhhh---CCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 197 ---------------ERYEH--L-EFQRKVAQ-------------CYQMLR---DSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 197 ---------------d~~e~--~-~~~~rv~~-------------~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
.|.+. . ...+|+.. .|.+++ ...++.||+++++|+|+++|.+.+
T Consensus 145 ~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 145 KPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred cccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 02111 2 23333322 232211 235899999999999999998875
No 31
>PLN02674 adenylate kinase
Probab=99.63 E-value=1.3e-14 Score=126.23 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=103.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
.+.+.|+|.|+||||||||++.|+++++-..+++- .++ +-..+++.|..+++++..+..+.+....-+. .++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv-~~~----- 102 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DEA----- 102 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHH-HHH-----
Confidence 34577999999999999999999999954322211 111 1122466777788877755433332211110 111
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC------C------
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG------E------ 197 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d------ 197 (259)
+.. ...+..+|+|+||.+.. |. +.+..+ ......||.+|+|++|.+++.+|+..|. .
T Consensus 103 -l~~-~~~~~g~ilDGfPRt~~--Qa------~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~ 172 (244)
T PLN02674 103 -MKK-PSCQKGFILDGFPRTVV--QA------QKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKF 172 (244)
T ss_pred -HhC-cCcCCcEEEeCCCCCHH--HH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCcccccc
Confidence 111 01234689999997532 21 223222 2233579999999999999999987651 0
Q ss_pred ------------------Ccc-hH-HHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 198 ------------------RYE-HL-EFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 198 ------------------~~e-~~-~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
|.+ +. ...+|+ +.|.+. . ...++.||+++++++|+++|...+
T Consensus 173 ~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL-~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 173 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred CCCcccCcccccCCccccCCCCCHHHHHHHH-HHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 111 12 333444 334331 1 135889999999999999998865
No 32
>PRK14528 adenylate kinase; Provisional
Probab=99.59 E-value=6.6e-14 Score=117.34 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-----cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-----FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+.|+|.|+|||||||+++.|++.++ +.++... ....+++.|..++.++..+....... ..-... .
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~-~~~~~~------~ 71 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSV-VIGIIK------D 71 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHH-HHHHHH------H
Confidence 4589999999999999999999984 3333211 11123455655666655443222211 000000 1
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCc-chH-HH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERY-EHL-EF 204 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~-e~~-~~ 204 (259)
.+... .....+|+|+||.+.- + .+.+.. +......||++|+|++|++++.+|+..|. .+. ++. .+
T Consensus 72 ~l~~~-~~~~g~viDG~Pr~~~--q------a~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i 142 (186)
T PRK14528 72 RIREA-DCKNGFLLDGFPRTVE--Q------ADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATI 142 (186)
T ss_pred HHhCc-CccCcEEEeCCCCCHH--H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHH
Confidence 11111 1123578899886431 1 022222 22234579999999999999999998762 111 122 33
Q ss_pred HHHHHHHHHhh-------h-CCCeEEEcCCCCHHHHHHHHHHH
Q 024986 205 QRKVAQCYQML-------R-DSSWKIIDACQSIEDVEKQLKEI 239 (259)
Q Consensus 205 ~~rv~~~y~~l-------~-~~~~~vIDa~~s~eev~~~I~~~ 239 (259)
.+|+..++... . ...++.||+++++++|++.|.+.
T Consensus 143 ~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 143 KNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 34443322221 1 24689999999999999998764
No 33
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.59 E-value=9.4e-14 Score=121.38 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL 136 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l 136 (259)
+|+|+|+|||||||+++.|++++...|++++.+.. +.+++.+.. +.......+ +......++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~--------D~lr~~~~~---~~~~~e~~~----~~~~~~~i~~~l 65 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT--------DLIRESFPV---WKEKYEEFI----RDSTLYLIKTAL 65 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc--------HHHHHHhHH---hhHHhHHHH----HHHHHHHHHHHH
Confidence 68999999999999999999999887887776542 223333210 001001000 111123456777
Q ss_pred hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhh
Q 024986 137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLR 216 (259)
Q Consensus 137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~ 216 (259)
..|..||+|+..+. ... ...+..+......|.++|||++|++++.+|...|++.+. .+..+++...|+...
T Consensus 66 ~~~~~VI~D~~~~~----~~~----r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~-~~~i~~l~~r~e~p~ 136 (249)
T TIGR03574 66 KNKYSVIVDDTNYY----NSM----RRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIP-NEVIKDMYEKFDEPG 136 (249)
T ss_pred hCCCeEEEeccchH----HHH----HHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCC-HHHHHHHHHhhCCCC
Confidence 88889999975431 110 011222233445788999999999999999987765443 355566666665432
Q ss_pred -----CCCeEEEcCCC--CHHHHHHHHHHHHHH
Q 024986 217 -----DSSWKIIDACQ--SIEDVEKQLKEIVLD 242 (259)
Q Consensus 217 -----~~~~~vIDa~~--s~eev~~~I~~~i~~ 242 (259)
+...++||++. ++++++++|.+.+..
T Consensus 137 ~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 137 TKYSWDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred CCCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 23668899865 779999999987654
No 34
>PLN02459 probable adenylate kinase
Probab=99.59 E-value=7.1e-14 Score=122.34 Aligned_cols=172 Identities=19% Similarity=0.155 Sum_probs=106.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHH-HHHHHHhHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTI-HLLFSANRWEKRS 130 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~-~ll~~a~r~~~~~ 130 (259)
+++.|+|.|+|||||||++..|++.++-..+++- .++ +...+++.|..++.++..+.-+++... .++ .+
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll--~~------ 99 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLL--SK------ 99 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHH--HH------
Confidence 3466888999999999999999999853322211 111 122356778888888877654443221 111 11
Q ss_pred HHHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-------------
Q 024986 131 MMEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------------- 196 (259)
Q Consensus 131 ~i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------------- 196 (259)
.+.... .....+|+|+||.+. +.+..+.. ...+|.+|+|++|.+++.+|+..|.
T Consensus 100 ~l~~~~~~~~~g~iLDGFPRt~-----------~Qa~~Le~-~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~ 167 (261)
T PLN02459 100 RLEAGEEEGESGFILDGFPRTV-----------RQAEILEG-VTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVAD 167 (261)
T ss_pred HHhcccccCCceEEEeCCCCCH-----------HHHHHHHh-cCCCCEEEEEECCHHHHHHHhhccccccccCccccccc
Confidence 111111 113468999999853 12222222 2458999999999999999987652
Q ss_pred ----------------------------CCcc-hHH-HHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHH
Q 024986 197 ----------------------------ERYE-HLE-FQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLK 237 (259)
Q Consensus 197 ----------------------------d~~e-~~~-~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~ 237 (259)
.|.+ +.+ ..+|+ +.|.+- . ...++.||+++++++|+++|.
T Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL-~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~ 246 (261)
T PLN02459 168 IDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARL-RVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLL 246 (261)
T ss_pred cccccccccccccCCCCCCCcccccccccCCCCCHHHHHHHH-HHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHH
Confidence 0111 123 33444 344331 1 146889999999999999999
Q ss_pred HHHHHHHhh
Q 024986 238 EIVLDQVTA 246 (259)
Q Consensus 238 ~~i~~~l~~ 246 (259)
+.|.---++
T Consensus 247 ~~l~~~~~~ 255 (261)
T PLN02459 247 QALNLDDED 255 (261)
T ss_pred HHhchhhhh
Confidence 988654433
No 35
>PRK14530 adenylate kinase; Provisional
Probab=99.58 E-value=3.1e-13 Score=115.62 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=92.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-----cC-----CCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-----FP-----DRTTSVGQMISAYLSNQSHLDDHTIHLLFSA 123 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-----~p-----~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a 123 (259)
.++.|+|.|++||||||+++.|++.++ +..+... +. ..++..+. ++.++..+........
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~------ 71 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVV------ 71 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHH------
Confidence 355799999999999999999999994 4333210 00 00112222 2222222211111100
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC------
Q 024986 124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE------ 197 (259)
Q Consensus 124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d------ 197 (259)
...+...+.....+|+|+|+.+. +....+. ....||++|+|++|++++.+|+..|..
T Consensus 72 -----~~~l~~~l~~~~~~IldG~pr~~-----------~q~~~l~-~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~ 134 (215)
T PRK14530 72 -----NEIVEEALSDADGFVLDGYPRNL-----------EQAEYLE-SITDLDVVLYLDVSEEELVDRLTGRRVCPDCGA 134 (215)
T ss_pred -----HHHHHHHHhcCCCEEEcCCCCCH-----------HHHHHHH-HhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCC
Confidence 01223334444457889877542 1111111 123689999999999999999865521
Q ss_pred --------------------Cc-----chH-HHHHHHHHHHHh-h-------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 198 --------------------RY-----EHL-EFQRKVAQCYQM-L-------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 198 --------------------~~-----e~~-~~~~rv~~~y~~-l-------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+. +.. ...+|+.. |.+ . . ...++.||+++++++|++.|.+.|..
T Consensus 135 ~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~-y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 135 NYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDV-FEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred ccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 11 112 23344433 322 1 1 13688999999999999999998865
No 36
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.57 E-value=1.3e-13 Score=118.01 Aligned_cols=170 Identities=17% Similarity=0.197 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
+.|+|.|+|||||||+++.|+++++...+++- .++ +...+++.|..+++++..+...+.....-++ . +.+.
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i-~------~~l~ 73 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLV-K------ERLA 73 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHH-H------HHHh
Confidence 35899999999999999999999964322221 111 1222456677777777655433332111000 0 1111
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC----------------
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG---------------- 196 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---------------- 196 (259)
. ...+..+|+|+||.+.- +. +.+..+ ......|+.+|+|++|.+++.+|+..|.
T Consensus 74 ~-~~~~~g~VlDGfPr~~~--qa------~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p 144 (215)
T PRK00279 74 Q-PDCKNGFLLDGFPRTIP--QA------EALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPP 144 (215)
T ss_pred c-cCccCCEEEecCCCCHH--HH------HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCC
Confidence 1 01233588899886421 10 222221 2223468999999999999999987652
Q ss_pred --------------CCcc-h-HHHHHHHHHHHHh-h-------hC-CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 197 --------------ERYE-H-LEFQRKVAQCYQM-L-------RD-SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 197 --------------d~~e-~-~~~~~rv~~~y~~-l-------~~-~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+.+ . ..+.+|+. .|.+ . .. ..++.||+++++++|+++|.+.|..
T Consensus 145 ~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~-~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 145 KVEGKCDVCGEELIQRADDNEETVRKRLE-VYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCcCcCcCCCCcccCCCCCCHHHHHHHHH-HHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 0111 1 23334443 3332 1 11 3588999999999999999998753
No 37
>PRK08233 hypothetical protein; Provisional
Probab=99.53 E-value=3.7e-13 Score=111.34 Aligned_cols=159 Identities=14% Similarity=0.216 Sum_probs=93.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE---ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW---RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~---~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
++++|+|.|++||||||+++.|++.|... .+... ..+.. ...+...+..+..+....... ...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~--~~~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~ 67 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNS--KALYFDRYDFDNC----PEDICKWIDKGANYSEWVLTP--------LIK 67 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCC--ceEEECCEEcccC----chhhhhhhhccCChhhhhhHH--------HHH
Confidence 57899999999999999999999998532 23322 11111 112233333322221111100 012
Q ss_pred HHHHHHhcC--CeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------CCcc--
Q 024986 131 MMEAKLKAG--TTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------ERYE-- 200 (259)
Q Consensus 131 ~i~~~l~~g--~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d~~e-- 200 (259)
.+...++.+ .+||+|.. +. +. . +.+ ...+|++|||++|++++.+|...|. +.+.
T Consensus 68 ~l~~~~~~~~~~~vivd~~-~~---~~-----~-~~~------~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~ 131 (182)
T PRK08233 68 DIQELIAKSNVDYIIVDYP-FA---YL-----N-SEM------RQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHND 131 (182)
T ss_pred HHHHHHcCCCceEEEEeee-hh---hc-----c-HHH------HHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhH
Confidence 233333333 56777742 21 00 0 011 1347999999999999988865442 1111
Q ss_pred hHHHHHHHHHHHHhhhC----CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 201 HLEFQRKVAQCYQMLRD----SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 201 ~~~~~~rv~~~y~~l~~----~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
..+|..+++..|.++.. ..+++||++.++++++++|.+.+..
T Consensus 132 ~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 132 LKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 13566667777776432 2467899999999999999998763
No 38
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.52 E-value=2.5e-13 Score=115.62 Aligned_cols=171 Identities=17% Similarity=0.227 Sum_probs=101.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFS 122 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~ 122 (259)
..++++|+|+||+||||||+++.|.+.....++.+.+ ++.|..+..-| +.+......+. +..+. -+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~-~le~~---~~~ 85 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNE-LLEWA---EVY 85 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCC-cEEEE---EEc
Confidence 4689999999999999999999997653222222222 22221110001 11112211110 00000 000
Q ss_pred HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHH--HHHhhcCCCCCCc
Q 024986 123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPE--KAAERGGYGGERY 199 (259)
Q Consensus 123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e--~~~~R~~~R~d~~ 199 (259)
.+.|.. ...+...+++|.+||+|-.+ ++ +..+.. ..||+++++++||+ ++.+|+..|++.
T Consensus 86 g~~YGt~~~~i~~~~~~g~~vi~~~~~------~g--------~~~l~~--~~pd~~~if~~pps~e~l~~Rl~~R~~~- 148 (206)
T PRK14738 86 GNYYGVPKAPVRQALASGRDVIVKVDV------QG--------AASIKR--LVPEAVFIFLAPPSMDELTRRLELRRTE- 148 (206)
T ss_pred CceecCCHHHHHHHHHcCCcEEEEcCH------HH--------HHHHHH--hCCCeEEEEEeCCCHHHHHHHHHHcCCC-
Confidence 011111 13466777889888886322 11 111222 24898888887655 679998876543
Q ss_pred chHHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 200 EHLEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 200 e~~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
...++++++...|.++.. ..+++||++.++|+++++|.+.|.+.
T Consensus 149 ~~~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 149 SPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 235788899888876642 47899999999999999999998765
No 39
>PRK14526 adenylate kinase; Provisional
Probab=99.51 E-value=7e-13 Score=113.33 Aligned_cols=164 Identities=22% Similarity=0.242 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHH-HHHHHHHhHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHT-IHLLFSANRWEKRSMME 133 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~-~~ll~~a~r~~~~~~i~ 133 (259)
-|+|.|++||||||+++.|++.++...++.- .++ +...+++.|..+++++..+....+.. ..++ . +.+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv--~------~~l~ 73 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIV--E------DKIN 73 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHH--H------HHHh
Confidence 4789999999999999999998853222111 111 11224566777888776654332221 1111 1 1122
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-----------------
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG----------------- 196 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----------------- 196 (259)
+. .....+|+|+||.+. +.+..+....+ .+.+|+|++|++++.+|+..|.
T Consensus 74 ~~-~~~~g~ilDGfPR~~-----------~Qa~~l~~~~~-~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 140 (211)
T PRK14526 74 TI-KNNDNFILDGFPRNI-----------NQAKALDKFLP-NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTK 140 (211)
T ss_pred cc-cccCcEEEECCCCCH-----------HHHHHHHHhcC-CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCC
Confidence 11 123457779998752 12222222222 2468889999999999987652
Q ss_pred -------------CCcc-hH-HHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 197 -------------ERYE-HL-EFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 197 -------------d~~e-~~-~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.|.+ +. .+.+|+ +.|.+- . ...++.||+++++++|+++|.+.+..
T Consensus 141 ~~~~~~~~~~~l~~R~DD~~e~i~~Rl-~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 141 EKGICDVCKGDLYQRKDDKEESLKTRL-QEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred ccCcCCCCCCeeeccCCCCHHHHHHHH-HHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 0111 12 333444 334331 1 13578999999999999999998753
No 40
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=112.73 Aligned_cols=165 Identities=20% Similarity=0.214 Sum_probs=104.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+..+|.+|+|+|++||||||+|..|.+.|...|+.+..++ |+.+|.-+..+=.++ .++|.+++.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD--------GDnvR~gL~~dLgFs--------~edR~eniR 82 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD--------GDNVRHGLNRDLGFS--------REDRIENIR 82 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec--------ChhHhhcccCCCCCC--------hHHHHHHHH
Confidence 4568899999999999999999999999999999988776 577777765432222 234555432
Q ss_pred ---HHHH-HHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHH
Q 024986 131 ---MMEA-KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLE 203 (259)
Q Consensus 131 ---~i~~-~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~ 203 (259)
.+.. ...+|-+||+- ..|.+. . +.+..+.+.. ..+.+-||+++|.++|.+|-+++. -+-..+.
T Consensus 83 RvaevAkll~daG~iviva--~ISP~r--~----~R~~aR~~~~--~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~ 152 (197)
T COG0529 83 RVAEVAKLLADAGLIVIVA--FISPYR--E----DRQMARELLG--EGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIK 152 (197)
T ss_pred HHHHHHHHHHHCCeEEEEE--eeCccH--H----HHHHHHHHhC--cCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCC
Confidence 2223 33578777762 233322 1 1122222211 125689999999999999976530 0000001
Q ss_pred HHHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 204 ~~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~ 242 (259)
-+.-+...|+... .+-++||+ ..++|+.+++|.+.+.+
T Consensus 153 ~fTGid~pYE~P~-~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 153 NFTGIDSPYEAPE-NPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred CCcCCCCCCCCCC-CCeeEeccccCCHHHHHHHHHHHHHh
Confidence 1122233454332 35678997 58999999999988754
No 41
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.51 E-value=4.8e-13 Score=110.75 Aligned_cols=164 Identities=17% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
..+|.+|+|+|++||||||+++.|++.|...+..++.++ ++.+++.+...+ ........ .+.+..+..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~--------~d~~r~~~~~~~-~~~~~~~~--~~~~~~~l~- 71 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD--------GDELREILGHYG-YDKQSRIE--MALKRAKLA- 71 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe--------cHHHHhhcCCCC-CCHHHHHH--HHHHHHHHH-
Confidence 468899999999999999999999999986665555543 355666554322 22111110 112222211
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC---cch-HHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER---YEH-LEFQRK 207 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~-~~~~~r 207 (259)
......|.+||+|.... .+++.........++++|||++|++++.+|...+..+ .+. .+....
T Consensus 72 -~~l~~~g~~VI~~~~~~------------~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~ 138 (176)
T PRK05541 72 -KFLADQGMIVIVTTISM------------FDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGV 138 (176)
T ss_pred -HHHHhCCCEEEEEeCCc------------HHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccC
Confidence 11235788999984321 1222233333445678999999999999997532000 000 000000
Q ss_pred HHHHHHhhhCCCeEEEcCC--CCHHHHHHHHHHHHHHH
Q 024986 208 VAQCYQMLRDSSWKIIDAC--QSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 208 v~~~y~~l~~~~~~vIDa~--~s~eev~~~I~~~i~~~ 243 (259)
....|... .-++||++ .++++++++|.+.+...
T Consensus 139 ~~~~~~~~---Ad~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 139 DIPFDEPK---ADLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred CCcccCCC---CCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 11122111 24677776 49999999998877554
No 42
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.50 E-value=2.5e-13 Score=113.59 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=70.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
|+|.|++||||||+++.|+++++ +.++.. + +....++.++.+++++..+...+..... ..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~l~ 67 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVI-----------KLL 67 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHH-----------HHH
Confidence 89999999999999999999984 333321 1 1111235566666666644333321111 112
Q ss_pred HHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 024986 133 EAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG 196 (259)
Q Consensus 133 ~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~ 196 (259)
.+.+. .+..+|+|+|+.+.. + .+++.........|+++|+|++|++++.+|+..|.
T Consensus 68 ~~~l~~~~~~~~~vldg~Pr~~~--q------~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 68 KERLKKPDCKKGFILDGFPRTVD--Q------AEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred HHHHhcccccCCEEEeCCCCCHH--H------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 22332 245688899886421 1 12232222223479999999999999999987663
No 43
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.47 E-value=2.4e-12 Score=111.27 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=75.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK 128 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~ 128 (259)
.++-|+|.|+|||||||+++.|++.++ +.++.+ ++ -...+++|+.+++++..+...++....-+. .
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv-~----- 75 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIV-K----- 75 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHH-H-----
Confidence 456699999999999999999999995 333322 21 122457788888887766444332211110 1
Q ss_pred HHHHHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 024986 129 RSMMEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG 195 (259)
Q Consensus 129 ~~~i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R 195 (259)
+.+...+ ..+..+|+|+||.+. .| ...+. ....|+++|+|++|.+++.+|+..|
T Consensus 76 -~~l~~~~~~~~~g~iLDGfPRt~--~Q---------a~~l~-~~~~~~~vi~l~~~~~~~~~Rl~~R 130 (229)
T PTZ00088 76 -DEIAKVTDDCFKGFILDGFPRNL--KQ---------CKELG-KITNIDLFVNIYLPRNILIKKLLGR 130 (229)
T ss_pred -HHHHhhccccCceEEEecCCCCH--HH---------HHHHH-hcCCCCEEEEEeCCHHHHHHHHHcC
Confidence 1122111 224568999998753 12 11122 2247999999999999999997654
No 44
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.46 E-value=3.5e-12 Score=106.18 Aligned_cols=168 Identities=20% Similarity=0.174 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFP-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
+.|+|.|+|||||||||+.|+++++--+++.. .++.. ...++.|..++.++..+.-++.....-++ .. .+.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v-~~------rl~ 73 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLV-KE------RLD 73 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHH-HH------HHH
Confidence 45899999999999999999999753222211 11111 22467888888877766523322111110 11 122
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-chHHHHHHHHHH
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGGYGGERY-EHLEFQRKVAQC 211 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~~~~~~rv~~~ 211 (259)
.+-... .+|+|+||.+...+ +.+++.. .....+|.++.++++.+++.+|+..|..+. ...+..++....
T Consensus 74 ~~d~~~-~~I~dg~PR~~~qa--------~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~ 144 (178)
T COG0563 74 EADCKA-GFILDGFPRTLCQA--------RALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKV 144 (178)
T ss_pred hhcccC-eEEEeCCCCcHHHH--------HHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 221122 79999999753221 2333332 222688999999999999999998663111 123344444455
Q ss_pred HHhhhC-----CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 212 YQMLRD-----SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 212 y~~l~~-----~~~~vIDa~~s~eev~~~I~~~i 240 (259)
|.+... .. +.||+.++++++.++|.+.+
T Consensus 145 y~~~~~pli~~y~-~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 145 YHEQTAPLIEYYS-VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred HHhcccchhhhhe-eeccCCCCHHHHHHHHHHhh
Confidence 654332 12 67999999999999998765
No 45
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=5.3e-12 Score=105.78 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHH-HHHHHhHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIH-LLFSANRWEKRSMMEA 134 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~-ll~~a~r~~~~~~i~~ 134 (259)
++|+++|+|||||||.++.|++.|...+..+++... +..+-++.++ .++-.-.. -.+...+. ...+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k--------dy~~~i~~DE-slpi~ke~yres~~ks~--~rlldS 70 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK--------DYLRGILWDE-SLPILKEVYRESFLKSV--ERLLDS 70 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch--------hhhhheeccc-ccchHHHHHHHHHHHHH--HHHHHH
Confidence 689999999999999999999999987766554321 1111112111 12111110 00001111 113344
Q ss_pred HHhcCCeEEEccccc-chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHH
Q 024986 135 KLKAGTTLIVDRYSY-SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQ 213 (259)
Q Consensus 135 ~l~~g~~VI~DR~~~-s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~ 213 (259)
+++ ..+||+|---| +++-|+ +....+....+-.+||+.+|++++.+|...|++.+++ +.++++-..|+
T Consensus 71 alk-n~~VIvDdtNYyksmRrq---------L~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~-Evl~qly~RfE 139 (261)
T COG4088 71 ALK-NYLVIVDDTNYYKSMRRQ---------LACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPE-EVLRQLYDRFE 139 (261)
T ss_pred Hhc-ceEEEEecccHHHHHHHH---------HHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCH-HHHHHHHHhhc
Confidence 454 56899985322 333333 2222345667889999999999999999887777654 66777767776
Q ss_pred hhhC-----CCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 214 MLRD-----SSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 214 ~l~~-----~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
+... .+..+||++....++.+.|+..+.
T Consensus 140 ePn~~~rWDspll~id~~d~~t~~IDfiesvl~ 172 (261)
T COG4088 140 EPNPDRRWDSPLLVIDDSDVSTEVIDFIESVLR 172 (261)
T ss_pred CCCCCccccCceEEEecccccccchhHHHHHHH
Confidence 6432 456888866556666666666554
No 46
>PRK03839 putative kinase; Provisional
Probab=99.41 E-value=5e-12 Score=105.01 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=83.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
+.|+|.|++||||||+++.|+++++ +.++.+. +.+++. .-+......... .+ ... ...+...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d---------~~~~~~-~~~~~~~~~~~~-~~--~~l--~~~~~~~ 62 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLG---YEYVDLT---------EFALKK-GIGEEKDDEMEI-DF--DKL--AYFIEEE 62 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC---CcEEehh---------hhhhhc-CCcccCChhhhc-CH--HHH--HHHHHHh
Confidence 3699999999999999999999994 4444322 222111 000011111000 00 000 0112222
Q ss_pred HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch--HHHHHHHHHHHH
Q 024986 136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH--LEFQRKVAQCYQ 213 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~--~~~~~rv~~~y~ 213 (259)
. .+..+|+|+++. .+..||.+|||++|++++.+|+..|+..-+. .....++...|.
T Consensus 63 ~-~~~~vIidG~~~---------------------~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~ 120 (180)
T PRK03839 63 F-KEKNVVLDGHLS---------------------HLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCL 120 (180)
T ss_pred c-cCCCEEEEeccc---------------------cccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 2 244577786421 1235899999999999999999765421110 111122222111
Q ss_pred -h-hh-CCCeEEEcCC-CCHHHHHHHHHHHHHHH
Q 024986 214 -M-LR-DSSWKIIDAC-QSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 214 -~-l~-~~~~~vIDa~-~s~eev~~~I~~~i~~~ 243 (259)
+ +. ...+++||++ .++++|+++|.+.+.+.
T Consensus 121 ~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 121 CEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG 154 (180)
T ss_pred HHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 1 11 2578899996 69999999999988653
No 47
>PRK04040 adenylate kinase; Provisional
Probab=99.40 E-value=3.4e-11 Score=101.16 Aligned_cols=168 Identities=15% Similarity=0.225 Sum_probs=90.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCC-CCHHHHHHHHHH--hHHHH--H
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH-LDDHTIHLLFSA--NRWEK--R 129 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~-~~~~~~~ll~~a--~r~~~--~ 129 (259)
+++|+|.|++||||||+++.|++.+. .++.++.. |+.+.+.....+- .+.....-+-.. .+++. .
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~---------g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~ 71 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNF---------GDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAA 71 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEec---------chHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHH
Confidence 57899999999999999999999995 23444321 2333332222111 111000000000 01111 1
Q ss_pred HHHHHHHhcCCeEEEccccc--chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC---CCCCcch---
Q 024986 130 SMMEAKLKAGTTLIVDRYSY--SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY---GGERYEH--- 201 (259)
Q Consensus 130 ~~i~~~l~~g~~VI~DR~~~--s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~---R~d~~e~--- 201 (259)
..+.. +..+..||+|++.. +...| -.|++...+. ...||.+|+|++||+++++|... |+..+++
T Consensus 72 ~~i~~-~~~~~~~~~~~h~~i~~~~g~--~~~~~~~~~~-----~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~ 143 (188)
T PRK04040 72 ERIAE-MAGEGPVIVDTHATIKTPAGY--LPGLPEWVLE-----ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEED 143 (188)
T ss_pred HHHHH-hhcCCCEEEeeeeeeccCCCC--cCCCCHHHHh-----hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHH
Confidence 22222 23455688898753 11111 1245544443 23799999999999999888763 3232332
Q ss_pred HHHHHHHHHHHHh----hhC-CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 202 LEFQRKVAQCYQM----LRD-SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 202 ~~~~~rv~~~y~~----l~~-~~~~vIDa~~s~eev~~~I~~~i 240 (259)
.++.......|.. ... +.++++|.++-+|+.+++|.+.|
T Consensus 144 I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 144 IEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 3444444444432 222 33455665555999999998876
No 48
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.39 E-value=4.8e-12 Score=105.87 Aligned_cols=169 Identities=13% Similarity=0.082 Sum_probs=93.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHH-----------hCCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL-----------SNQSHLDDHTIHLLFSA 123 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l-----------~~~~~~~~~~~~ll~~a 123 (259)
|.+|+|.||+||||||+++.|+..+.. .+......... +......+++ ..+ .+. +...+.-
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~g 73 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITR-PASAGSENHIALSEQEFFTRAGQN-LFA---LSWHANG 73 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCC-ccchhHHhheeEcHHHHHHHHHCC-chh---hHHHHhC
Confidence 678999999999999999999887642 22221110000 0001111111 110 000 0001111
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHH
Q 024986 124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLE 203 (259)
Q Consensus 124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~ 203 (259)
+.|.....+...++.|..||+|+. ..+ ...+...++.+-.+|||++|++++.+|+..|+.. ...+
T Consensus 74 ~~yg~~~~~~~~l~~g~~VI~~G~----~~~----------~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~-~~~~ 138 (186)
T PRK10078 74 LYYGVGIEIDLWLHAGFDVLVNGS----RAH----------LPQARARYQSALLPVCLQVSPEILRQRLENRGRE-NASE 138 (186)
T ss_pred CccCCcHHHHHHHhCCCEEEEeCh----HHH----------HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCC-CHHH
Confidence 111112235667778888888643 111 1112223445668899999999999999765322 1223
Q ss_pred HHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 024986 204 FQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 204 ~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~ 247 (259)
...++.... .......++||+++++++++++|.+.+..--+++
T Consensus 139 i~~rl~r~~-~~~~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 139 INARLARAA-RYQPQDCHTLNNDGSLRQSVDTLLTLLHLSQKEK 181 (186)
T ss_pred HHHHHHHhh-hhccCCEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence 444543321 1112467889988999999999998876544433
No 49
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.38 E-value=1.1e-11 Score=101.98 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=47.6
Q ss_pred CCEEEEEeCCHHHHHhhcCCCCC----------Ccc--hHHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 175 PDSVLYLDIPPEKAAERGGYGGE----------RYE--HLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R~d----------~~e--~~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
.+++|||++|++++.+|+..|.. .++ ..+++++....|.... .++||+++++++|+++|.+.+.
T Consensus 94 ~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a---~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 94 NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVA---HHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhC---CEEEcCCCCHHHHHHHHHHHHh
Confidence 56899999999999999976421 111 1345555556676543 4899999999999999998875
No 50
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.38 E-value=4.5e-12 Score=103.50 Aligned_cols=145 Identities=22% Similarity=0.218 Sum_probs=84.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHH--HhCCC-CCCHHHHHHHHHHhHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY--LSNQS-HLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~--l~~~~-~~~~~~~~ll~~a~r~~~~~~i 132 (259)
|+|+|+|.||+||||+|+.|+ .+ |+.++... +.+++. +...+ ..... .+..+. ....+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i~l~---------el~~e~~~~~~~de~r~s~----~vD~d~--~~~~l 61 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVIELN---------ELAKENGLYTEYDELRKSV----IVDVDK--LRKRL 61 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh---CCceeeHH---------HHHHhcCCeeccCCccceE----EeeHHH--HHHHH
Confidence 589999999999999999998 66 56665432 332221 11110 00000 000000 00122
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY 212 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y 212 (259)
.+.+.++ ..|+|..+ + ..++.+|++|.|.++|+++.+|+..|+-. ....++++....
T Consensus 62 e~~~~~~-~~Ivd~H~----~----------------hl~~~~dlVvVLR~~p~~L~~RLk~RGy~--~eKI~ENveAEi 118 (180)
T COG1936 62 EELLREG-SGIVDSHL----S----------------HLLPDCDLVVVLRADPEVLYERLKGRGYS--EEKILENVEAEI 118 (180)
T ss_pred HHHhccC-CeEeechh----h----------------hcCCCCCEEEEEcCCHHHHHHHHHHcCCC--HHHHHHHHHHHH
Confidence 3333334 35555432 1 12346899999999999999999987533 222333332211
Q ss_pred -----HhhhC--CCeEEEcC-CCCHHHHHHHHHHHHHH
Q 024986 213 -----QMLRD--SSWKIIDA-CQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 213 -----~~l~~--~~~~vIDa-~~s~eev~~~I~~~i~~ 242 (259)
.+..+ ..++.||+ +.+++++++.|.+++..
T Consensus 119 ~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 119 LDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence 11111 57899996 68999999999999886
No 51
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.37 E-value=3.2e-11 Score=97.42 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=90.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH---HH-H
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK---RS-M 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~---~~-~ 131 (259)
++|+|.|+|||||||++..|+++| |++++. .|..+|++-.+- .++- .+...++....+. .+ .
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~---gl~~vs---------aG~iFR~~A~e~-gmsl-~ef~~~AE~~p~iD~~iD~r 66 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL---GLKLVS---------AGTIFREMARER-GMSL-EEFSRYAEEDPEIDKEIDRR 66 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh---CCceee---------ccHHHHHHHHHc-CCCH-HHHHHHHhcCchhhHHHHHH
Confidence 579999999999999999999999 565552 134455543322 1221 1111122111111 11 1
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC-Ccch--HHHHHH-
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE-RYEH--LEFQRK- 207 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d-~~e~--~~~~~r- 207 (259)
......+|++ |+++. ++ .|+.. ..+|+.|||.+|.++-.+|+..|.. .++. .+...|
T Consensus 67 q~e~a~~~nv-Vlegr----LA---------~Wi~k-----~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE 127 (179)
T COG1102 67 QKELAKEGNV-VLEGR----LA---------GWIVR-----EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE 127 (179)
T ss_pred HHHHHHcCCe-EEhhh----hH---------HHHhc-----cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1222235554 44432 22 34431 5789999999999999999987732 2221 111111
Q ss_pred --HHHHHHhhhC---C--C--eEEEcCC-CCHHHHHHHHHHHHHHHHh
Q 024986 208 --VAQCYQMLRD---S--S--WKIIDAC-QSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 208 --v~~~y~~l~~---~--~--~~vIDa~-~s~eev~~~I~~~i~~~l~ 245 (259)
-.+.|+++.. . . -++||++ .++++|..-|..+++....
T Consensus 128 ~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 128 ESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred HHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence 1234555432 1 1 2689985 6899999888888876543
No 52
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.36 E-value=6.7e-11 Score=96.51 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=84.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKLK 137 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l~ 137 (259)
|++.|++||||||+++.|++.++ ..+ ++.-.. .....++...... .+.+......+. ...+.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~---~~~--v~~D~~--~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~l~ 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG---AKF--IEGDDL--HPAANIEKMSAGI-PLNDDDRWPWLQ----NLNDASTAAAA 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC---CeE--EeCccc--cChHHHHHHHcCC-CCChhhHHHHHH----HHHHHHHHHHh
Confidence 57889999999999999999984 222 221110 0011122222211 121111100110 01122334455
Q ss_pred cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhh-
Q 024986 138 AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLR- 216 (259)
Q Consensus 138 ~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~- 216 (259)
.|..+|+|-...+ -.|. +++. ....+-.+|||++|++++.+|+..|.......+ .+...|..+.
T Consensus 69 ~~~~~Vi~~t~~~-~~~r-------~~~~----~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~---~i~~~~~~~~~ 133 (163)
T TIGR01313 69 KNKVGIITCSALK-RHYR-------DILR----EAEPNLHFIYLSGDKDVILERMKARKGHFMKAD---MLESQFAALEE 133 (163)
T ss_pred cCCCEEEEecccH-HHHH-------HHHH----hcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHH---HHHHHHHHhCC
Confidence 5654455432221 1111 2222 223344579999999999999988754322222 2444444332
Q ss_pred ----CCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 217 ----DSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 217 ----~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
+..+++||+++++|++.++|.+.|.
T Consensus 134 ~~~~e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 134 PLADETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred CCCCCCceEEEECCCCHHHHHHHHHHHHh
Confidence 1478999999999999999998763
No 53
>PRK01184 hypothetical protein; Provisional
Probab=99.34 E-value=2.1e-10 Score=95.50 Aligned_cols=166 Identities=11% Similarity=0.132 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC-C-CCH-HHHHHHHHHhHH--HHH-
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-H-LDD-HTIHLLFSANRW--EKR- 129 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~-~-~~~-~~~~ll~~a~r~--~~~- 129 (259)
++|++.|++||||||++. +++++ |+.++.. |+.+++.+...+ . ... ......-....+ ...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~---g~~~i~~---------~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 68 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM---GIPVVVM---------GDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVA 68 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc---CCcEEEh---------hHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHH
Confidence 489999999999999986 55544 5555422 355555543211 1 100 000000000000 001
Q ss_pred HHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---CcchHHH
Q 024986 130 SMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYEHLEF 204 (259)
Q Consensus 130 ~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e~~~~ 204 (259)
..+.+.+. .+..||+|.+ .. . .+...+...++.+..+|++++|+++..+|+..|+. .....++
T Consensus 69 ~~~~~~i~~~~~~~vvidg~-r~-~----------~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~ 136 (184)
T PRK01184 69 KRTVPKIREKGDEVVVIDGV-RG-D----------AEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEEL 136 (184)
T ss_pred HHHHHHHHhcCCCcEEEeCC-CC-H----------HHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHH
Confidence 12223333 3578888876 21 1 11222222334567899999999999999986631 1112234
Q ss_pred HHHHHHH--H--HhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 205 QRKVAQC--Y--QMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 205 ~~rv~~~--y--~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
..+...+ + .+.....-++||++.++++..++|.+.+..++..
T Consensus 137 ~~r~~~q~~~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~~ 182 (184)
T PRK01184 137 EERDERELSWGIGEVIALADYMIVNDSTLEEFRARVRKLLERILRS 182 (184)
T ss_pred HHHHHHHhccCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence 4443332 1 0111112256777889999999999988776643
No 54
>PRK13946 shikimate kinase; Provisional
Probab=99.33 E-value=1.7e-10 Score=96.41 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH-H-HHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW-E-KRS 130 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~-~-~~~ 130 (259)
...+.|++.|++||||||+++.|+++| |++++..+ ..+.... + .+.....-.+....+ . ...
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~L---g~~~id~D---------~~~~~~~--g--~~~~e~~~~~ge~~~~~~e~~ 71 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATML---GLPFLDAD---------TEIERAA--R--MTIAEIFAAYGEPEFRDLERR 71 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeECcC---------HHHHHHh--C--CCHHHHHHHHCHHHHHHHHHH
Confidence 356789999999999999999999999 44444221 1111111 1 111000000000001 0 112
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-----chHHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-----EHLEFQ 205 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-----e~~~~~ 205 (259)
.+...+..+..||..|.- . | +..+....+. .-.++|||++|++++.+|+..|..+- +..+..
T Consensus 72 ~l~~l~~~~~~Vi~~ggg--~--~-----~~~~~r~~l~----~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i 138 (184)
T PRK13946 72 VIARLLKGGPLVLATGGG--A--F-----MNEETRAAIA----EKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETL 138 (184)
T ss_pred HHHHHHhcCCeEEECCCC--C--c-----CCHHHHHHHH----cCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHH
Confidence 344555566778876531 0 1 0111111111 12488999999999999998764431 112333
Q ss_pred HHHHHHHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 024986 206 RKVAQCYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 206 ~rv~~~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~ 247 (259)
+++.+....+. ..++++.+++.+++++++.|.+.+..+++..
T Consensus 139 ~~~~~~R~~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~~ 181 (184)
T PRK13946 139 ARLMEERYPVYAEADLTVASRDVPKEVMADEVIEALAAYLEKE 181 (184)
T ss_pred HHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHhhccc
Confidence 33222222111 2345444457899999999999998877654
No 55
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.33 E-value=9.2e-11 Score=97.11 Aligned_cols=162 Identities=18% Similarity=0.082 Sum_probs=88.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHh--------CC--CCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLS--------NQ--SHLDDHTIHLLFSA 123 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~--------~~--~~~~~~~~~ll~~a 123 (259)
+|++|++.|++||||||+++.|++.+....+.+. . ..+-..+..... ++ ...........|.+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~-~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 73 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFG-V------DSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGA 73 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccC-c------cHHHHhcChhhcccccccccCccCCcccchHHHHHHHH
Confidence 4789999999999999999999998853221110 0 000011100000 00 00000000011111
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHH-hhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH
Q 024986 124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCK-APEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL 202 (259)
Q Consensus 124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~-~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~ 202 (259)
. ...+...+++|..||+|--.... .+.. .+......|-..|+|++|++++.+|...|++...
T Consensus 74 ~----~~~~~~~l~~G~~VIvD~~~~~~-----------~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~-- 136 (175)
T cd00227 74 W----YEAVAAMARAGANVIADDVFLGR-----------AALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVP-- 136 (175)
T ss_pred H----HHHHHHHHhCCCcEEEeeeccCC-----------HHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccc--
Confidence 1 13355677889999998432210 1111 1111223466899999999999999988765422
Q ss_pred HHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 203 ~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i 240 (259)
.........+... ....++||++ .|++|++++|.+.|
T Consensus 137 ~~~~~~~~~~~~~-~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 137 GQARKQARVVHAG-VEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred hHHHHHHHHhcCC-CcceEEEECCCCCHHHHHHHHHHhc
Confidence 1111111112111 1246899987 58999999998765
No 56
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=5.6e-11 Score=94.65 Aligned_cols=150 Identities=18% Similarity=0.163 Sum_probs=93.3
Q ss_pred EcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH----HH
Q 024986 61 EGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA----KL 136 (259)
Q Consensus 61 eG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~----~l 136 (259)
.|..||||||++..|+++|+...+.-..+ .. .+.|.++ ..+.++++ .+|+.+++.+.. ..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdl-----Hp--~aNi~KM-~~GiPL~D--------dDR~pWL~~l~~~~~~~~ 64 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDL-----HP--PANIEKM-SAGIPLND--------DDRWPWLEALGDAAASLA 64 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceeccccc-----CC--HHHHHHH-hCCCCCCc--------chhhHHHHHHHHHHHHhh
Confidence 48999999999999999997532211111 11 2556665 33444433 133333222222 22
Q ss_pred hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh
Q 024986 137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML 215 (259)
Q Consensus 137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l 215 (259)
..|..+|+ .+|.+..++ .+.++ ...|+ .+|||+.+++++.+|...|...|.+.+. +.++|..|
T Consensus 65 ~~~~~~vi---~CSALKr~Y-----RD~LR-----~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~l---l~SQfa~L 128 (161)
T COG3265 65 QKNKHVVI---ACSALKRSY-----RDLLR-----EANPGLRFVYLDGDFDLILERMKARKGHFMPASL---LDSQFATL 128 (161)
T ss_pred cCCCceEE---ecHHHHHHH-----HHHHh-----ccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHH---HHHHHHHh
Confidence 33443333 145443221 12232 12344 5899999999999999999887776544 35666665
Q ss_pred hC----CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 216 RD----SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 216 ~~----~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.. ..+++||.++++|++++++.+.|..
T Consensus 129 E~P~~de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 129 EEPGADEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred cCCCCCCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 43 4789999999999999999988764
No 57
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.32 E-value=7.1e-11 Score=97.84 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=88.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEE--EE-ecCCCC-ChH----HHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVE--LW-RFPDRT-TSV----GQMISAYLSNQSHLDDHTIHLLFSANR 125 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~--~~-~~p~~~-~~~----g~~ir~~l~~~~~~~~~~~~ll~~a~r 125 (259)
|.+|+|.|++||||||+++.|+..+...| ..+. .+ +.+..+ ... .+.+......+ .+..... +....
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~ 76 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGG-AFALSWQ---AHGLS 76 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCC-CEEEEEe---ecCcc
Confidence 46899999999999999999999886443 2111 11 111100 000 11111111111 1100000 00000
Q ss_pred HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 024986 126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQ 205 (259)
Q Consensus 126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~ 205 (259)
+.....+...+.+|..||+|.... + .......+ ...++|||++|++++.+|+..|+... ..++.
T Consensus 77 ~g~~~~i~~~~~~g~~vv~~g~~~----~----------~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R~~~~-~~~~~ 140 (179)
T TIGR02322 77 YGIPAEIDQWLEAGDVVVVNGSRA----V----------LPEARQRY-PNLLVVNITASPDVLAQRLAARGRES-REEIE 140 (179)
T ss_pred ccChHHHHHHHhcCCEEEEECCHH----H----------HHHHHHHC-CCcEEEEEECCHHHHHHHHHHcCCCC-HHHHH
Confidence 000012234456788888875411 1 11111112 24489999999999999998764322 22344
Q ss_pred HHHHHHHHhh-hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 206 RKVAQCYQML-RDSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 206 ~rv~~~y~~l-~~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
+++....... ....+++||++++++++.++|.+.+.
T Consensus 141 ~rl~~~~~~~~~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 141 ERLARSARFAAAPADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred HHHHHHhhcccccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 4443322111 23567889999999999999998774
No 58
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.30 E-value=7.4e-11 Score=98.33 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=92.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+..+|.+|+|.|++||||||+++.|...+...|..++.+. ++.+++.+.....+.+....-.+ .+. ..
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~--------~d~~r~~l~~~~~~~~~~~~~~~--~~~--~~ 81 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD--------GDNVRHGLNKDLGFSEEDRKENI--RRI--GE 81 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC--------ChHHHhhhccccCCCHHHHHHHH--HHH--HH
Confidence 3468999999999999999999999999987776655543 12334333322222221110000 010 01
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHHHHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQRK 207 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~r 207 (259)
.....+.+|.+||+|-... . .+. .+.+..+... .+..+|||++|++++.+|...+. .+.+....+..
T Consensus 82 ~~~~~~~~G~~VI~d~~~~-~-~~~------r~~~~~~~~~--~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~ 151 (184)
T TIGR00455 82 VAKLFVRNGIIVITSFISP-Y-RAD------RQMVRELIEK--GEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTG 151 (184)
T ss_pred HHHHHHcCCCEEEEecCCC-C-HHH------HHHHHHhCcC--CCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCccc
Confidence 2234457899999984211 1 110 1222222222 26689999999999999943110 00000001111
Q ss_pred HHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHH
Q 024986 208 VAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEI 239 (259)
Q Consensus 208 v~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~ 239 (259)
....|..+. ...++||++ .++++++++|.+.
T Consensus 152 ~~~~y~~p~-~adl~Idt~~~~~~~~~~~i~~~ 183 (184)
T TIGR00455 152 IDSPYEAPE-NPEVVLDTDQNDREECVGQIIEK 183 (184)
T ss_pred ccCCCCCCC-CCcEEEECCCCCHHHHHHHHHHh
Confidence 223343221 245889975 6999999998764
No 59
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.29 E-value=8e-11 Score=104.18 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=85.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
+||+|+|.|||||||+|+.|++.+...+..++++.. +.+. +......+...+-. .|......++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~--------~~~~--~~~~~y~~~~~Ek~----~R~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISD--------DSLG--IDRNDYADSKKEKE----ARGSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-T--------HHHH---TTSSS--GGGHHH----HHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcc--------cccc--cchhhhhchhhhHH----HHHHHHHHHHHh
Confidence 589999999999999999999999988888877652 1111 12111111111111 122223456677
Q ss_pred HhcCCeEEEccccc-chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHHHHH
Q 024986 136 LKAGTTLIVDRYSY-SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVAQCY 212 (259)
Q Consensus 136 l~~g~~VI~DR~~~-s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~~~y 212 (259)
+.++.+||+|.-.| .++-|. + -.+.+....+..+||+++|.+.+.+|...|.+. |. .+.+.++...|
T Consensus 68 ls~~~iVI~Dd~nYiKg~RYe--------l-yclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~-~e~i~~m~~Rf 137 (270)
T PF08433_consen 68 LSKDTIVILDDNNYIKGMRYE--------L-YCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYP-EETIDDMIQRF 137 (270)
T ss_dssp HTT-SEEEE-S---SHHHHHH--------H-HHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S--HHHHHHHHHH-
T ss_pred hccCeEEEEeCCchHHHHHHH--------H-HHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCC-HHHHHHHHHHh
Confidence 77889999996443 333332 2 223455677889999999999999999877544 53 46777888888
Q ss_pred HhhhC-----CCeEEEcC---CCCHHHHHHHH
Q 024986 213 QMLRD-----SSWKIIDA---CQSIEDVEKQL 236 (259)
Q Consensus 213 ~~l~~-----~~~~vIDa---~~s~eev~~~I 236 (259)
+.... .+..+|+. ..+.+++++.|
T Consensus 138 E~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 138 EEPDPKNRWDSPLFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp --TTSS-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred cCCCCCCCccCCeEEEecCCCCCCHHHHHHHH
Confidence 77532 24566663 24556666666
No 60
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.27 E-value=4.2e-10 Score=92.09 Aligned_cols=160 Identities=18% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH-HH-H
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW-EK-R 129 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~-~~-~ 129 (259)
|++++.|+|.|++||||||+++.|++.++ +.++... ..++... +..+...... +....+ +. .
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d---------~~~~~~~--g~~~~~~~~~--~g~~~~~~~~~ 64 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTD---------HLIEARA--GKSIPEIFEE--EGEAAFRELEE 64 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEECh---------HHHHHHc--CCCHHHHHHH--HCHHHHHHHHH
Confidence 46789999999999999999999999994 4333211 1111111 1011100000 000000 01 1
Q ss_pred HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cc---hHHH
Q 024986 130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YE---HLEF 204 (259)
Q Consensus 130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e---~~~~ 204 (259)
..+.........||..+. +.++ +......+ ....++|||++|++++.+|+..+..+ .. ..+.
T Consensus 65 ~~~~~l~~~~~~vi~~g~---~~~~------~~~~r~~l----~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~ 131 (175)
T PRK00131 65 EVLAELLARHNLVISTGG---GAVL------REENRALL----RERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEK 131 (175)
T ss_pred HHHHHHHhcCCCEEEeCC---CEee------cHHHHHHH----HhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHH
Confidence 222333333334444321 1111 11111111 12358999999999999999764322 11 1111
Q ss_pred ----HHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHHH
Q 024986 205 ----QRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 205 ----~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~~ 243 (259)
.+.....|.+.. -++||+ +.+++++++.|.+.|..+
T Consensus 132 ~~~~~~~~~~~~~~~~---dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 132 LRDLYEERDPLYEEVA---DITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred HHHHHHHHHHHHHhhc---CeEEeCCCCCHHHHHHHHHHHHHhh
Confidence 111122233322 267886 589999999999988643
No 61
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=2.3e-11 Score=100.58 Aligned_cols=167 Identities=20% Similarity=0.288 Sum_probs=98.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSAN 124 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a~ 124 (259)
+|++|+|.||+|+||||+++.|.+.. ...++|.. ++.|..+..-| +.+.++...+ .+-.++ .|..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~-~fLE~a---~~~gn 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERD-EFLEWA---EYHGN 77 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcC-CcEEEE---EEcCC
Confidence 89999999999999999999999988 44566653 45554332211 2222222221 111110 11123
Q ss_pred HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCcchH
Q 024986 125 RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERYEHL 202 (259)
Q Consensus 125 r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~e~~ 202 (259)
.|.. ...+...++.|..||+|= -+|+ ..++....| +-..||+..| .+++.+|+..|+..-+ .
T Consensus 78 yYGT~~~~ve~~~~~G~~vildI------d~qG--------a~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgtds~-e 141 (191)
T COG0194 78 YYGTSREPVEQALAEGKDVILDI------DVQG--------ALQVKKKMP-NAVSIFILPPSLEELERRLKGRGTDSE-E 141 (191)
T ss_pred cccCcHHHHHHHHhcCCeEEEEE------ehHH--------HHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCCCCH-H
Confidence 3333 245667788898899872 2332 222233333 3345555444 3446778887764322 3
Q ss_pred HHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 203 ~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
...+|+..++.++.. .++++||. ++|..++++..++..-
T Consensus 142 ~I~~Rl~~a~~Ei~~~~~fdyvivNd--d~e~a~~~l~~ii~ae 183 (191)
T COG0194 142 VIARRLENAKKEISHADEFDYVIVND--DLEKALEELKSIILAE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEECc--cHHHHHHHHHHHHHHH
Confidence 566788888877643 67888875 5888888888877643
No 62
>PRK13947 shikimate kinase; Provisional
Probab=99.26 E-value=4.3e-10 Score=92.26 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL 136 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l 136 (259)
-|+|.|++||||||+++.|++.|+ ++++..+... ....|..+.+++...+. ..+ +......++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~-~~~~g~~~~~~~~~~ge------~~~----~~~e~~~~~~l~ 68 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEI-EKMTGMTVAEIFEKDGE------VRF----RSEEKLLVKKLA 68 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhh-hhhcCCcHHHHHHHhCh------HHH----HHHHHHHHHHHh
Confidence 489999999999999999999994 4444322100 00001111122221110 001 100011222233
Q ss_pred hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHHHHHHh
Q 024986 137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVAQCYQM 214 (259)
Q Consensus 137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~~~y~~ 214 (259)
..+..||..+. + ..++.+.+..+. ..+++|||++|++++.+|+..|..+ ....++.+++.+.|.+
T Consensus 69 ~~~~~vi~~g~---g------~vl~~~~~~~l~----~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~ 135 (171)
T PRK13947 69 RLKNLVIATGG---G------VVLNPENVVQLR----KNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKE 135 (171)
T ss_pred hcCCeEEECCC---C------CcCCHHHHHHHH----hCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH
Confidence 34455664221 1 112222232222 2257999999999999999765333 1111223333333322
Q ss_pred hh----CCCeEEEc-CCCCHHHHHHHHHHH
Q 024986 215 LR----DSSWKIID-ACQSIEDVEKQLKEI 239 (259)
Q Consensus 215 l~----~~~~~vID-a~~s~eev~~~I~~~ 239 (259)
.. ..+ ++|| ++.++++++++|.+.
T Consensus 136 r~~~y~~ad-~~Idt~~~~~~~i~~~I~~~ 164 (171)
T PRK13947 136 REPFYDFAD-YTIDTGDMTIDEVAEEIIKA 164 (171)
T ss_pred HHHHHHhcC-EEEECCCCCHHHHHHHHHHH
Confidence 11 123 5555 568999999999983
No 63
>PRK04182 cytidylate kinase; Provisional
Probab=99.26 E-value=5.5e-10 Score=91.97 Aligned_cols=71 Identities=23% Similarity=0.138 Sum_probs=46.0
Q ss_pred CCEEEEEeCCHHHHHhhcCCCCCC-cc-hHHHH----HHHHHHHHhhh-----C--CCeEEEcCC-CCHHHHHHHHHHHH
Q 024986 175 PDSVLYLDIPPEKAAERGGYGGER-YE-HLEFQ----RKVAQCYQMLR-----D--SSWKIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R~d~-~e-~~~~~----~rv~~~y~~l~-----~--~~~~vIDa~-~s~eev~~~I~~~i 240 (259)
++++|||++|++++.+|+..|..+ .+ ..... ....+.|..+. + .--++||++ .+++++++.|.+.+
T Consensus 92 ~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~ 171 (180)
T PRK04182 92 ADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAI 171 (180)
T ss_pred CCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHH
Confidence 789999999999999999876432 11 11111 11122333321 1 122788975 69999999999998
Q ss_pred HHHHh
Q 024986 241 LDQVT 245 (259)
Q Consensus 241 ~~~l~ 245 (259)
.....
T Consensus 172 ~~~~~ 176 (180)
T PRK04182 172 DKLLK 176 (180)
T ss_pred HHHhc
Confidence 76544
No 64
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.26 E-value=2.4e-10 Score=102.26 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCC-----CCHHHHHHHHHHhHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH-----LDDHTIHLLFSANRWEKR 129 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~-----~~~~~~~ll~~a~r~~~~ 129 (259)
+++|++.|++||||||+|+.|++++. +. ..++. +.++..+..... ........+..+ ..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~--~~--~~l~~--------D~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 65 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP--KA--VNVNR--------DDLRQSLFGHGEWGEYKFTKEKEDLVTKA----QE 65 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC--CC--EEEec--------cHHHHHhcCCCcccccccChHHHHHHHHH----HH
Confidence 46899999999999999999999883 22 22221 223333221111 111111111100 11
Q ss_pred HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHH
Q 024986 130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVA 209 (259)
Q Consensus 130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~ 209 (259)
..+...+..|..||+|.+..+.... +.+..+......+-.+|+|++|.+++.+|+..|+...-+.+..+++.
T Consensus 66 ~~~~~~l~~g~~vIid~~~~~~~~~--------~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~ 137 (300)
T PHA02530 66 AAALAALKSGKSVIISDTNLNPERR--------RKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMF 137 (300)
T ss_pred HHHHHHHHcCCeEEEeCCCCCHHHH--------HHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHH
Confidence 2345566788889999776542211 22222222233333479999999999999998854433334444333
Q ss_pred HHHHhhhC------------CCeEEEcCCCCHHH
Q 024986 210 QCYQMLRD------------SSWKIIDACQSIED 231 (259)
Q Consensus 210 ~~y~~l~~------------~~~~vIDa~~s~ee 231 (259)
+.++...+ ...+++|.++++.+
T Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 138 KQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred HHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 33332211 35778888777665
No 65
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.25 E-value=1.5e-10 Score=94.20 Aligned_cols=115 Identities=24% Similarity=0.289 Sum_probs=71.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH---H
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR---S 130 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~---~ 130 (259)
+|.+|+|+|.+||||||+|..|.++|...|+++..++ |+.++..+..+-.++. .+|.++. .
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD--------gD~lR~~l~~dl~fs~--------~dR~e~~rr~~ 64 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD--------GDNLRHGLNADLGFSK--------EDREENIRRIA 64 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE--------HHHHCTTTTTT--SSH--------HHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec--------CcchhhccCCCCCCCH--------HHHHHHHHHHH
Confidence 5889999999999999999999999999999998876 5666655443222332 1233322 1
Q ss_pred HH-HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 024986 131 MM-EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY 194 (259)
Q Consensus 131 ~i-~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~ 194 (259)
.+ +-..++|.+||+.- .+. |.. ..++.+..... .+-+.||+++|.+++.+|-.+
T Consensus 65 ~~A~ll~~~G~ivIva~--isp--~~~----~R~~~R~~~~~--~~f~eVyv~~~~e~~~~RD~K 119 (156)
T PF01583_consen 65 EVAKLLADQGIIVIVAF--ISP--YRE----DREWARELIPN--ERFIEVYVDCPLEVCRKRDPK 119 (156)
T ss_dssp HHHHHHHHTTSEEEEE--------SHH----HHHHHHHHHHT--TEEEEEEEES-HHHHHHHTTT
T ss_pred HHHHHHHhCCCeEEEee--ccC--chH----HHHHHHHhCCc--CceEEEEeCCCHHHHHHhCch
Confidence 11 23346899999862 111 111 11333332211 156899999999999999654
No 66
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.25 E-value=3.8e-10 Score=95.16 Aligned_cols=165 Identities=21% Similarity=0.226 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC-----CCCChHHHHHHHHHh-----CCCCCCHHHH-HHHHHH-
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP-----DRTTSVGQMISAYLS-----NQSHLDDHTI-HLLFSA- 123 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p-----~~~~~~g~~ir~~l~-----~~~~~~~~~~-~ll~~a- 123 (259)
.+|.|+|++||||||+++.|++ + |+.++..+.- ..+++..+.+.+.+. ..+.++.... ..+|..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~ 78 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L---GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDP 78 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c---CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCH
Confidence 5799999999999999999987 5 6666543211 112333344444332 1234444322 222211
Q ss_pred ---hHHHH------HHHHHHHHhc---CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh
Q 024986 124 ---NRWEK------RSMMEAKLKA---GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER 191 (259)
Q Consensus 124 ---~r~~~------~~~i~~~l~~---g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R 191 (259)
.+.+. ...+...++. ..+||+|-. +.|.. ......|.+|++++|+++..+|
T Consensus 79 ~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p----ll~e~-------------~~~~~~D~vi~V~a~~e~~~~R 141 (194)
T PRK00081 79 EARKKLEAILHPLIREEILEQLQEAESSPYVVLDIP----LLFEN-------------GLEKLVDRVLVVDAPPETQLER 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh----HhhcC-------------CchhhCCeEEEEECCHHHHHHH
Confidence 01111 1122222222 246776632 22211 1113479999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHhh--hCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 192 GGYGGERYEHLEFQRKVAQCYQML--RDSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 192 ~~~R~d~~e~~~~~~rv~~~y~~l--~~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+..| +.+...++..++..+.... ....-++||++++++++.+++.+.+..
T Consensus 142 l~~R-~~~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 142 LMAR-DGLSEEEAEAIIASQMPREEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHc-CCCCHHHHHHHHHHhCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9876 3344445666665332111 112347889999999999999887643
No 67
>PRK06217 hypothetical protein; Validated
Probab=99.25 E-value=1.8e-10 Score=96.04 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=83.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
+.|+|.|++||||||+++.|++.++ ++++.. ..|. +.+.+ . ..... .+ ...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~~~-~~~~~--------~--~~~~~--------~~---~~~ 56 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWLPT-DPPFT--------T--KRPPE--------ER---LRL 56 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeeccC-CCCcc--------c--cCCHH--------HH---HHH
Confidence 4599999999999999999999984 444322 1221 00000 0 00000 00 111
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC----C-------cc
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE----R-------YE 200 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d----~-------~e 200 (259)
+...+..+..+|+|+++.. + ... ....+|.+|||++|++++.+|+..|.. + .+
T Consensus 57 ~~~~~~~~~~~vi~G~~~~---~----------~~~---~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e 120 (183)
T PRK06217 57 LLEDLRPREGWVLSGSALG---W----------GDP---LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMH 120 (183)
T ss_pred HHHHHhcCCCEEEEccHHH---H----------HHH---HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHH
Confidence 2223333445666766532 1 111 134689999999999999999876531 1 11
Q ss_pred --hHHHHHHHH------------HHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 201 --HLEFQRKVA------------QCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 201 --~~~~~~rv~------------~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
..++++.+. ..+..+.. ..++++++..+++++.++|...|..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 121 KASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 123333321 11122211 4677889999999999999988753
No 68
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.23 E-value=3.7e-10 Score=92.85 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
+-|++.|++||||||+.+.|++.|+ ++.+..+.-- ....|..|.+++...+ +.. -|......++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~I-e~~~g~sI~eIF~~~G------E~~----FR~~E~~vl~~l 68 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEI-EKRTGMSIAEIFEEEG------EEG----FRRLETEVLKEL 68 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHH-HHHHCcCHHHHHHHHh------HHH----HHHHHHHHHHHH
Confidence 4589999999999999999999995 3333221000 0000111222222111 000 111111344555
Q ss_pred HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-----ch----HHHHH
Q 024986 136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-----EH----LEFQR 206 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-----e~----~~~~~ 206 (259)
+..+..||.-+. +.. +..+-...+. .--.+|||++|++++.+|+.....|- .+ .+.++
T Consensus 69 ~~~~~~ViaTGG---G~v------~~~enr~~l~----~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~ 135 (172)
T COG0703 69 LEEDNAVIATGG---GAV------LSEENRNLLK----KRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLE 135 (172)
T ss_pred hhcCCeEEECCC---ccc------cCHHHHHHHH----hCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHH
Confidence 566656775321 100 1112121111 22289999999999999998322220 11 24444
Q ss_pred HHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 207 KVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 207 rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
.....|.+.+ .++++++...++++++|.+.+...+
T Consensus 136 ~R~~~Y~e~a---~~~~~~~~~~~~v~~~i~~~l~~~~ 170 (172)
T COG0703 136 ERQPLYREVA---DFIIDTDDRSEEVVEEILEALEGSL 170 (172)
T ss_pred HHHHHHHHhC---cEEecCCCCcHHHHHHHHHHHHHhc
Confidence 4456676654 4788887666999999999887654
No 69
>PRK13948 shikimate kinase; Provisional
Probab=99.23 E-value=8.3e-10 Score=92.26 Aligned_cols=160 Identities=15% Similarity=0.083 Sum_probs=86.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
+.++..|++.|++||||||+++.|++.|+ +.++..+.-. ....|..+.+++...+ . . . .|-.....
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~i-e~~~g~si~~if~~~G---e---~-~---fR~~E~~~ 72 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYI-ERVTGKSIPEIFRHLG---E---A-Y---FRRCEAEV 72 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHH-HHHHhCCHHHHHHHhC---H---H-H---HHHHHHHH
Confidence 46788999999999999999999999984 4444322100 0011222223322211 0 0 0 01000122
Q ss_pred HHHHHhcCCeEEEccc-ccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c------ch-
Q 024986 132 MEAKLKAGTTLIVDRY-SYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y------EH- 201 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~-~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~------e~- 201 (259)
++..+..+..||.=+. .. ...+....+. .-..+|||++|++++.+|+..+ ++ . +.
T Consensus 73 l~~l~~~~~~VIa~GgG~v----------~~~~n~~~l~----~~g~vV~L~~~~e~l~~Rl~~~-~RPll~~~~~~~~l 137 (182)
T PRK13948 73 VRRLTRLDYAVISLGGGTF----------MHEENRRKLL----SRGPVVVLWASPETIYERTRPG-DRPLLQVEDPLGRI 137 (182)
T ss_pred HHHHHhcCCeEEECCCcEE----------cCHHHHHHHH----cCCeEEEEECCHHHHHHHhcCC-CCCCCCCCChHHHH
Confidence 3344444555664211 10 0111111111 1247899999999999999642 21 1 11
Q ss_pred HHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHH
Q 024986 202 LEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 202 ~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l 244 (259)
.+.+++....|.. + -++||++ .++++++++|.+.+..++
T Consensus 138 ~~l~~~R~~~Y~~-a---~~~i~t~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 138 RTLLNEREPVYRQ-A---TIHVSTDGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred HHHHHHHHHHHHh-C---CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 1223333445532 3 2677764 799999999999998755
No 70
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.21 E-value=7.2e-10 Score=91.75 Aligned_cols=160 Identities=17% Similarity=0.114 Sum_probs=84.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
.+...|+|.|++||||||++..|++.++ +.++..+... ....|..+..++... + .. .| |......+
T Consensus 2 ~~~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i-~~~~g~~i~~~~~~~---g---~~-~f---r~~e~~~l 67 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEI-EKRTGADIGWVFDVE---G---EE-GF---RDREEKVI 67 (172)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchH-HHHhCcCHhHHHHHh---C---HH-HH---HHHHHHHH
Confidence 3456799999999999999999999884 4433222100 000000011111110 0 00 01 10011222
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c---ch----HH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y---EH----LE 203 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~---e~----~~ 203 (259)
......+..||.-+. + ... ..+-... +..-+.+|||++|++++.+|+..+..+ . +. ..
T Consensus 68 ~~l~~~~~~vi~~gg--g-~v~------~~~~~~~----l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~ 134 (172)
T PRK05057 68 NELTEKQGIVLATGG--G-SVK------SRETRNR----LSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEA 134 (172)
T ss_pred HHHHhCCCEEEEcCC--c-hhC------CHHHHHH----HHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Confidence 332334445553211 0 110 1111111 123468999999999999999754322 1 11 12
Q ss_pred HHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 204 ~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
+.+.....|.++++ ++||++ .++++++++|.+.+.+
T Consensus 135 l~~~R~~~Y~~~Ad---~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 135 LANERNPLYEEIAD---VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHhh
Confidence 33444567776665 778875 7999999999887753
No 71
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.21 E-value=1.6e-09 Score=90.13 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=92.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
.|.+|+|.|++||||||+++.|...+.. ..++-..... ...++.....- .+.+. ..+.+. .+... ...
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~--~~~~r~~~~g~-~~~~~-~~~~~~-~~~~~--~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHP--AKNIDKMSQGI-PLTDE-DRLPWL-ERLND--ASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCC--HhHHHHHhcCC-CCCcc-cchHHH-HHHHH--HHH
Confidence 4778999999999999999999998853 1222111011 11223332211 11111 000111 11111 111
Q ss_pred HHHh-cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 024986 134 AKLK-AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY 212 (259)
Q Consensus 134 ~~l~-~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y 212 (259)
..+. ....+|+..++.. ..+.+......|..+|||++|++++.+|+..|...+.+.+.+..-...+
T Consensus 70 ~~~~~~~~g~iv~s~~~~-------------~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~ 136 (176)
T PRK09825 70 SLYKKNETGFIVCSSLKK-------------QYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDAL 136 (176)
T ss_pred HHHhcCCCEEEEEEecCH-------------HHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHc
Confidence 1112 1223333222211 1112223344577999999999999999998854444444444333333
Q ss_pred Hhh--hCCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 213 QML--RDSSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 213 ~~l--~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
+.. .+..|+.||++++++++.+++.+.+...+..
T Consensus 137 e~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 172 (176)
T PRK09825 137 ERPCADEHDIARIDVNHDIENVTEQCRQAVQAFRQA 172 (176)
T ss_pred CCCCCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 322 1247999999999999999999988776643
No 72
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.19 E-value=4.8e-10 Score=92.63 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=85.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHH-HHHHHHHHhHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDH-TIHLLFSANRWEKRSM 131 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~-~~~ll~~a~r~~~~~~ 131 (259)
++|.+|+|.|++||||||+++.|+..+...|..+..++. +.+++.+..+..+.+. ....+ .+....
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~--------D~~~~~~~~~~~~~~~~r~~~~---~~~~~~-- 68 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG--------DAVRTNLSKGLGFSKEDRDTNI---RRIGFV-- 68 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC--------ccHHHHHhcCCCCChhhHHHHH---HHHHHH--
Confidence 478899999999999999999999999877776665531 1222322221111111 00000 000000
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC---CCCcchH-HHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG---GERYEHL-EFQRK 207 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R---~d~~e~~-~~~~r 207 (259)
.......|.+||+|... .|. .+...+... ..+-.+|||++|++++.+|.... ..+.+.. .+...
T Consensus 69 a~~~~~~g~~vi~~~~~----~~~-------~~~~~l~~~-~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~ 136 (175)
T PRK00889 69 ANLLTRHGVIVLVSAIS----PYR-------ETREEVRAN-IGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGI 136 (175)
T ss_pred HHHHHhCCCEEEEecCC----CCH-------HHHHHHHhh-cCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCccc
Confidence 11123568888887321 111 111111111 23457999999999999995210 0000000 00000
Q ss_pred HHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 208 VAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 208 v~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
....| ......+.+.+++.++++++++|.+.+.+
T Consensus 137 ~~~~~-~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 137 DDPYE-PPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCCC-CCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 01111 11112344444567999999999998864
No 73
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.18 E-value=6.8e-11 Score=95.46 Aligned_cols=117 Identities=23% Similarity=0.255 Sum_probs=69.5
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 024986 60 LEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA 134 (259)
Q Consensus 60 ieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~ 134 (259)
|.|+|||||||+|+.|+++++ +..+.. + +....++.|+.+++++.++..+++....-+. . ..+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll-~------~~l~~ 70 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELL-K------ERLEQ 70 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHH-H------HHHHS
T ss_pred CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHH-H------HHHhh
Confidence 579999999999999999984 433321 1 1123567788888888776544432211110 1 11111
Q ss_pred HHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 024986 135 KLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY 194 (259)
Q Consensus 135 ~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~ 194 (259)
. .....+|+|+||.+..-.. .+...+......|+.+|+|++|.+.+.+|+..
T Consensus 71 ~-~~~~g~ildGfPrt~~Qa~-------~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 71 P-PCNRGFILDGFPRTLEQAE-------ALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp G-GTTTEEEEESB-SSHHHHH-------HHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred h-cccceeeeeeccccHHHHH-------HHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 1 2346789999998542111 11111223567899999999999999999875
No 74
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.18 E-value=3.9e-10 Score=95.28 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=88.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCH--HHHHHHHHHhHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDD--HTIHLLFSANRWEK 128 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~--~~~~ll~~a~r~~~ 128 (259)
..++|.+|+|.|++||||||++..|...+...|..++.++. .. +++.+.....+.+ ....+. +..
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~----d~----~~~~~~~~~~~~~~~~~~~~~----~l~- 86 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG----DN----VRHGLCSDLGFSDADRKENIR----RVG- 86 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC----Ee----HHhhhhhcCCcCcccHHHHHH----HHH-
Confidence 34689999999999999999999999999777776665541 11 2221111111111 111110 100
Q ss_pred HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC----CCcch-HH
Q 024986 129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG----ERYEH-LE 203 (259)
Q Consensus 129 ~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----d~~e~-~~ 203 (259)
......+..|.+||.+ +......+ .+++..+... .+.++|||++|++++.+|.. |+ .+-+. .+
T Consensus 87 -~~a~~~~~~G~~VI~~-~~~~~~~~-------R~~~r~~l~~--~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~~~~~~ 154 (198)
T PRK03846 87 -EVAKLMVDAGLVVLTA-FISPHRAE-------RQMVRERLGE--GEFIEVFVDTPLAICEARDP-KGLYKKARAGEIRN 154 (198)
T ss_pred -HHHHHHhhCCCEEEEE-eCCCCHHH-------HHHHHHHccc--CCEEEEEEcCCHHHHHhcCc-hhHHHHhhcCCccC
Confidence 1122344568778764 22101111 1233322211 23348999999999999942 11 00010 01
Q ss_pred HHHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 204 ~~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~ 242 (259)
+. .....|..+.. .-++||+ ..++++++++|.+.+.+
T Consensus 155 l~-~~r~~Y~~p~~-ad~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 155 FT-GIDSVYEAPES-PEIHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred cc-cccccCCCCCC-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence 11 12223643221 2367886 57999999999988753
No 75
>PRK08356 hypothetical protein; Provisional
Probab=99.17 E-value=2.6e-09 Score=90.05 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=41.8
Q ss_pred CEEEEEeCCHHHHHhhcCCCCCCc----chHHHHHHHH----HHHHh---hhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 176 DSVLYLDIPPEKAAERGGYGGERY----EHLEFQRKVA----QCYQM---LRDSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 176 dlvI~Ld~~~e~~~~R~~~R~d~~----e~~~~~~rv~----~~y~~---l~~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
..+|||++|++++.+|+..|+..- ...+.+.++. ..|.. ....++++ +++.+++++.++|.+++..+
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI-~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHTTKLKDKADFVI-VNEGTLEELRKKVEEILREL 193 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhhhhHHHhCcEEE-ECCCCHHHHHHHHHHHHHHh
Confidence 589999999999999997664321 1222222221 11211 11134555 44689999999999988654
No 76
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.16 E-value=3.3e-10 Score=94.99 Aligned_cols=169 Identities=16% Similarity=0.187 Sum_probs=92.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSA 123 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a 123 (259)
.+|++|+|.||+||||||+++.|.+.+....+.+. .++.|..+..-| +.+......+. +-.+. .|.-
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~-f~e~~---~~~g 77 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGE-FLEWA---EVHD 77 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCC-eEEEE---EECC
Confidence 37899999999999999999999987754333332 234443221101 11222222111 10000 0001
Q ss_pred hHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCcch
Q 024986 124 NRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERYEH 201 (259)
Q Consensus 124 ~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~e~ 201 (259)
+.|.. ...+...+++|.++|+|-.+. -+..+....+.+-++||+..| +++..+|+..|+..- .
T Consensus 78 ~~YGt~~~~i~~~~~~g~~~i~d~~~~--------------g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s-~ 142 (186)
T PRK14737 78 NYYGTPKAFIEDAFKEGRSAIMDIDVQ--------------GAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDS-E 142 (186)
T ss_pred eeecCcHHHHHHHHHcCCeEEEEcCHH--------------HHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCC-H
Confidence 11222 134667788899999873221 122222222222268888874 688899998775432 2
Q ss_pred HHHHHHHHHHHHhhh--C-CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 202 LEFQRKVAQCYQMLR--D-SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 202 ~~~~~rv~~~y~~l~--~-~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+..+++..+-.+.. . .++ +|+++ ++++..+++.++|.+
T Consensus 143 e~i~~Rl~~~~~e~~~~~~~D~-vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 143 ESIEKRIENGIIELDEANEFDY-KIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred HHHHHHHHHHHHHHhhhccCCE-EEECc-CHHHHHHHHHHHHhc
Confidence 345556555433322 1 244 45555 899999999887653
No 77
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=99.16 E-value=3.2e-10 Score=94.14 Aligned_cols=180 Identities=18% Similarity=0.190 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC------CChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR------TTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~------~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+..|||.+|+||||..+.+..+.... ...+.+|.. +.. ...+..++.++..++- +.+-... +.
T Consensus 24 ~~~iEGNIa~GKsTfl~~~~~~t~~~---~ev~tEPV~kW~nV~~~~-~n~L~~mY~ep~Rws~-tfQtYv~------lt 92 (244)
T KOG4235|consen 24 LSIIEGNIAVGKSTFLNFFLNKTYEE---WEVLTEPVAKWQNVQGAN-ANLLDMMYREPARWSY-TFQTYVF------LT 92 (244)
T ss_pred eEEEecccccchHHHHHHHHhccCcc---ceecCchHHHHhcccccc-ccHHHHHhhchHhhee-hhhHHHH------HH
Confidence 33499999999999999777655321 223344421 000 0122233343332211 1111111 11
Q ss_pred HHHHHH--hcC--CeEEEcccccchh-h-----hhcCC--C----CCHHHHHhhh-ccCCCCCEEEEEeCCHHHHHhhcC
Q 024986 131 MMEAKL--KAG--TTLIVDRYSYSGV-A-----FSSAK--G----IDIEWCKAPE-IGLLAPDSVLYLDIPPEKAAERGG 193 (259)
Q Consensus 131 ~i~~~l--~~g--~~VI~DR~~~s~~-a-----y~~~~--g----l~~~~~~~~~-~~~~~PdlvI~Ld~~~e~~~~R~~ 193 (259)
.++..+ ..| .+-|++|+++|.. . |.... . +..+|..-+. .....+|.+|||.++|++|.+|+.
T Consensus 93 rL~~~~~p~~~~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~ 172 (244)
T KOG4235|consen 93 RLKVQLEPFNGRKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIY 172 (244)
T ss_pred HHHHHhcCCCCCCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHH
Confidence 122222 123 5667777777543 1 22111 1 1135555444 334789999999999999999998
Q ss_pred CCCCCcc---hHHHHHHHHHHHHhh---------hCCCeEEEcCCCCHHH-----HHHHHHHHHHHHHhhh
Q 024986 194 YGGERYE---HLEFQRKVAQCYQML---------RDSSWKIIDACQSIED-----VEKQLKEIVLDQVTAC 247 (259)
Q Consensus 194 ~R~d~~e---~~~~~~rv~~~y~~l---------~~~~~~vIDa~~s~ee-----v~~~I~~~i~~~l~~~ 247 (259)
.|...-| +++|++.+....+.+ .+.++.++|++...|- -+++....+.++++.+
T Consensus 173 ~R~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n~df~~e~~~~~~~~~~v~ef~~~~ 243 (244)
T KOG4235|consen 173 LRAREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHNMDFSLELTEYERLMREVNEFVKNL 243 (244)
T ss_pred HHhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 6533222 468888776655543 2358999998644332 3455556666666543
No 78
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.15 E-value=6.4e-10 Score=93.97 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=92.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLF 121 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~ 121 (259)
++.+|.+|+|.|++||||||+++.|...+...++.+ ..++.|..+..- .+.++.....+..+.. ..+
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEW----AEV 76 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEE----EEE
Confidence 356899999999999999999999999875222211 123444322100 1222222221110000 000
Q ss_pred HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 024986 122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE 200 (259)
Q Consensus 122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e 200 (259)
..+.+.. ...+...+.+|.+||+|--+.. ...+....+.+-.++++..+.+++.+|+..|++.-
T Consensus 77 ~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g--------------~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~- 141 (205)
T PRK00300 77 FGNYYGTPRSPVEEALAAGKDVLLEIDWQG--------------ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDS- 141 (205)
T ss_pred CCccccCcHHHHHHHHHcCCeEEEeCCHHH--------------HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCC-
Confidence 0111111 1346677788999998843221 11112223333335555677889999998775321
Q ss_pred hHHHHHHHHHHHHhh---hCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 201 HLEFQRKVAQCYQML---RDSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 201 ~~~~~~rv~~~y~~l---~~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
.....+++.....+. ...+.+++| .+++++.+++.+++...
T Consensus 142 ~~~i~~rl~~~~~~~~~~~~~d~vi~n--~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 142 EEVIARRLAKAREEIAHASEYDYVIVN--DDLDTALEELKAIIRAE 185 (205)
T ss_pred HHHHHHHHHHHHHHHHhHHhCCEEEEC--CCHHHHHHHHHHHHHHH
Confidence 223444443332222 124555554 37999999999998774
No 79
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=99.15 E-value=1.1e-09 Score=94.53 Aligned_cols=166 Identities=16% Similarity=0.207 Sum_probs=101.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
..+.+|+|+|.|||||+.+++.|.+.++.+|+.|..+..|.. -+. .. +. ..|+.
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~----eE~-----~~-----p~-------lwRfw----- 82 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSD----RER-----TQ-----WY-------FQRYV----- 82 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH----HHH-----cC-----hH-------HHHHH-----
Confidence 468999999999999999999999999999998887665541 011 10 10 12221
Q ss_pred HHHH-hcCCeEEEcccccchhhhhcCCCC-C-HHHH------Hhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCC--
Q 024986 133 EAKL-KAGTTLIVDRYSYSGVAFSSAKGI-D-IEWC------KAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGER-- 198 (259)
Q Consensus 133 ~~~l-~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~~------~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~-- 198 (259)
..+ ..|.+.|+||++|.........|. + .+|- ..++ ......-+-|||+++.++..+|+..|.+.
T Consensus 83 -~~lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~ 161 (230)
T TIGR03707 83 -QHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPL 161 (230)
T ss_pred -HhCCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 222 569999999999977654433332 2 2222 1222 23345568999999999999999765321
Q ss_pred --c--c-----hHHHHHHHHHHHHhhh------CCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 199 --Y--E-----HLEFQRKVAQCYQMLR------DSSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 199 --~--e-----~~~~~~rv~~~y~~l~------~~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
+ . ..+...+...+|.++- ..+|++|+++.. .-.--.|.+.|.+.|..
T Consensus 162 k~Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk-~~a~l~v~~~i~~~l~~ 223 (230)
T TIGR03707 162 KQWKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK-KRARLNAIRHILSRLDY 223 (230)
T ss_pred ccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH-HHHHHHHHHHHHHhCCC
Confidence 1 1 1222333444554431 258999998732 22223344444444443
No 80
>PHA03136 thymidine kinase; Provisional
Probab=99.14 E-value=2.6e-09 Score=97.57 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=92.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC--ChH--HHHHHHHHhC-----CCCCCHH-H-------
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT--TSV--GQMISAYLSN-----QSHLDDH-T------- 116 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~--~~~--g~~ir~~l~~-----~~~~~~~-~------- 116 (259)
+-..|.|||+.|+||||+++.|.+. ......++.+.||-.- +.+ .+.|..++.- .+.++.. +
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~~-~~~~~~vl~v~EPm~yW~~v~~~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~~ 113 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLMEM-PDTLAARLYLAEPMAAWRNHFGGADMIKEINEIQELKARGDIACRDAKAIAAAE 113 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHhc-cccCCCeeeecCchHHHHhhcCcchHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 4568999999999999999999873 2223335666666210 111 1444444321 2333321 1
Q ss_pred HHHHHHHhHHHHH-HHHHHHHh------------cCCeEEEcccccchh-hhhcC---CC-CCHH-HHHhh--hccCCCC
Q 024986 117 IHLLFSANRWEKR-SMMEAKLK------------AGTTLIVDRYSYSGV-AFSSA---KG-IDIE-WCKAP--EIGLLAP 175 (259)
Q Consensus 117 ~~ll~~a~r~~~~-~~i~~~l~------------~g~~VI~DR~~~s~~-ay~~~---~g-l~~~-~~~~~--~~~~~~P 175 (259)
.++.|+.= +... ..+.+.+. -..++|+||.+.+.. .|... .| +... .+..+ ....+.|
T Consensus 114 ~Q~~fa~P-~~~~~~~~~~~~g~~~~~~~~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~~~~~p~p 192 (378)
T PHA03136 114 LQLQFAAP-LRIFHHVASNLFGSERCYSAAARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISGIPDEPHG 192 (378)
T ss_pred HHHHhccH-HHHHHHHHHHhhccccccCCCCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhhCcCCCCC
Confidence 11111110 0001 12222221 126899999998543 22211 12 2222 22222 3456789
Q ss_pred CEEEEEeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 024986 176 DSVLYLDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML 215 (259)
Q Consensus 176 dlvI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l 215 (259)
|++|||+++++++.+|+..|+..+| +.+|++++...|..+
T Consensus 193 D~IIyL~l~~e~~~~RI~kRgR~~E~I~~~YL~~L~~~Y~~~ 234 (378)
T PHA03136 193 GNIVIMDLDECEHAERIIARGRPGEAIDVRFLCALHNIYICF 234 (378)
T ss_pred CEEEEEeCCHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876666 368999999988765
No 81
>PRK13949 shikimate kinase; Provisional
Probab=99.14 E-value=3.1e-09 Score=87.73 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL 136 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l 136 (259)
-|+|.|++||||||+++.|++.++ +.++..+.-- ....+..+.+++...+ .. . .|......+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i-~~~~~~~~~~~~~~~g---~~----~---fr~~e~~~l~~l~ 68 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFI-ENRFHKTVGDIFAERG---EA----V---FRELERNMLHEVA 68 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHH-HHHHCccHHHHHHHhC---HH----H---HHHHHHHHHHHHH
Confidence 489999999999999999999994 3333221000 0000111112221110 00 0 0100011222222
Q ss_pred hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC-CCC-cc----hHHHHHHHHH
Q 024986 137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG-GER-YE----HLEFQRKVAQ 210 (259)
Q Consensus 137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R-~d~-~e----~~~~~~rv~~ 210 (259)
....+||..+.-. . ...+-.. .+..-+++|||++|++++.+|+..+ ..| +. ..++.+.+.+
T Consensus 69 ~~~~~vis~Ggg~---~------~~~~~~~----~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~ 135 (169)
T PRK13949 69 EFEDVVISTGGGA---P------CFFDNME----LMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIE 135 (169)
T ss_pred hCCCEEEEcCCcc---c------CCHHHHH----HHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHH
Confidence 3455777654211 0 0111111 1233478999999999999998632 112 11 1222222222
Q ss_pred HHHh---hh-CCCeEEEcCC-CCHHHHHHHHHHH
Q 024986 211 CYQM---LR-DSSWKIIDAC-QSIEDVEKQLKEI 239 (259)
Q Consensus 211 ~y~~---l~-~~~~~vIDa~-~s~eev~~~I~~~ 239 (259)
.|.+ +. ..+ ++||++ .++++++++|.+.
T Consensus 136 l~~~R~~~Y~~ad-~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 136 ALEKRAPFYRQAK-IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred HHHHHHHHHHhCC-EEEECCCCCHHHHHHHHHHh
Confidence 2322 21 123 778875 6999999998864
No 82
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.14 E-value=3.6e-09 Score=86.43 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH---HHHH-HH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR---WEKR-SM 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r---~~~~-~~ 131 (259)
++|+|.|++||||||+++.|++.+ |++++.. ++.+++..... ..+.... .-+.... ...+ ..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l---g~~~~~~---------~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~ 66 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL---SLKLISA---------GDIFRELAAKM-GLDLIEF-LNYAEENPEIDKKIDRR 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCceecH---------HHHHHHHHHHc-CCCHHHH-HHHHhcCcHHHHHHHHH
Confidence 479999999999999999999988 4443321 12222222111 1111100 0000000 0001 12
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC-cch-HH-H---H
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER-YEH-LE-F---Q 205 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~-~e~-~~-~---~ 205 (259)
+......+..+|+|+.... |+ ....+|++|||++|+++..+|+..|... .+. .. . .
T Consensus 67 i~~~~~~~~~~Vi~g~~~~-------------~~-----~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d 128 (171)
T TIGR02173 67 IHEIALKEKNVVLESRLAG-------------WI-----VREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIERE 128 (171)
T ss_pred HHHHHhcCCCEEEEecccc-------------ee-----ecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 2233223444555653210 11 0235789999999999999999876432 221 11 1 1
Q ss_pred HHHHHHHHhhh-----C-CCe-EEEcCC-CCHHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLR-----D-SSW-KIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 206 ~rv~~~y~~l~-----~-~~~-~vIDa~-~s~eev~~~I~~~i 240 (259)
..-.+.|.... + ..+ ++||++ .++++ ++.|..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 129 ESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred HHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 11122233321 1 122 889986 79999 99998865
No 83
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=99.13 E-value=9.4e-10 Score=104.26 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=107.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
...+.+|+|+|.|||||+++++.|.+.++.+|+.|..+..|... +. .. ++ ..|+.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e----E~-----~~-----~f-------lwRfw---- 91 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE----ER-----ER-----PP-------MWRFW---- 91 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH----Hh-----cC-----cH-------HHHHH----
Confidence 45789999999999999999999999999999998877776510 10 10 10 12221
Q ss_pred HHHHH-hcCCeEEEcccccchhhhhcCCCC-C-HHHH------Hhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCC-
Q 024986 132 MEAKL-KAGTTLIVDRYSYSGVAFSSAKGI-D-IEWC------KAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGER- 198 (259)
Q Consensus 132 i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~~------~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~- 198 (259)
..+ ..|.++|+||++|.........|. + .+|- ..++ ......-+-|||+++.++..+|+..|.++
T Consensus 92 --~~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P 169 (493)
T TIGR03708 92 --RRLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDP 169 (493)
T ss_pred --HhCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 223 569999999999977655443332 2 2222 1222 22344558999999999999999765322
Q ss_pred ---c--c-----hHHHHHHHHHHHHhhh------CCCeEEEcCCC---CHHHHHHHHHHHHHHHHh
Q 024986 199 ---Y--E-----HLEFQRKVAQCYQMLR------DSSWKIIDACQ---SIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 199 ---~--e-----~~~~~~rv~~~y~~l~------~~~~~vIDa~~---s~eev~~~I~~~i~~~l~ 245 (259)
+ . ..+.......+|.++- ..+|++|+++. ..-.|.+.|.+.+...+.
T Consensus 170 ~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~l~ 235 (493)
T TIGR03708 170 ETRWRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRARLA 235 (493)
T ss_pred ccccCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 1222333344554431 15899999973 344567777777776664
No 84
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.13 E-value=4e-10 Score=93.22 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=89.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSANR 125 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~r 125 (259)
|.+|+|.||+||||||+++.|++.+...++.+ ...+.|..+..- .+.+.+.+..+. +-... .+..+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~ 76 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGE-FLEWA---EVHGNY 76 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCC-cEEEE---EECCee
Confidence 67999999999999999999999775433332 233444322110 011222222111 00000 000111
Q ss_pred HHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHH
Q 024986 126 WEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEF 204 (259)
Q Consensus 126 ~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~ 204 (259)
+.. ...+...+.+|.+||+|.-+.. ...+...++.|..++++..+.+++.+|+..|++. ...+.
T Consensus 77 y~~~~~~i~~~~~~g~~vi~d~~~~~--------------~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~-~~~~i 141 (180)
T TIGR03263 77 YGTPKSPVEEALAAGKDVLLEIDVQG--------------ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTD-SEEVI 141 (180)
T ss_pred eCCcHHHHHHHHHCCCeEEEECCHHH--------------HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCC-CHHHH
Confidence 211 2456777889999999853221 1112222344556666677788999999876442 12234
Q ss_pred HHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 205 QRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 205 ~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
.+++.+.-.++. ..++++++ + +++++.+++.+.+.
T Consensus 142 ~~rl~~~~~~~~~~~~~d~~i~n-~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 142 ERRLAKAKKEIAHADEFDYVIVN-D-DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHHHHHhccccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence 444433322221 13455554 3 78999999988763
No 85
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.12 E-value=1.3e-09 Score=99.17 Aligned_cols=178 Identities=18% Similarity=0.196 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEecCC----------CC---ChHHHHHHHH----Hh-------CCCC
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRFPD----------RT---TSVGQMISAY----LS-------NQSH 111 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~p~----------~~---~~~g~~ir~~----l~-------~~~~ 111 (259)
+++|+|++||||||+++.|++.|. ..|+.+..+..-+ .+ ...-+..|+. +. ++..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 579999999999999999999997 5788775432110 00 0111122222 11 1111
Q ss_pred CCH------HHH----HHH--------HHHhHHHHH-HHHHHHHhcCCeEEEc-ccccchhhhhcCCCCCHHHHHhhhcc
Q 024986 112 LDD------HTI----HLL--------FSANRWEKR-SMMEAKLKAGTTLIVD-RYSYSGVAFSSAKGIDIEWCKAPEIG 171 (259)
Q Consensus 112 ~~~------~~~----~ll--------~~a~r~~~~-~~i~~~l~~g~~VI~D-R~~~s~~ay~~~~gl~~~~~~~~~~~ 171 (259)
+.+ ... ..+ ..+++.++. +.+.+.+..+..||+| +|++.++.|. +..+...
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Rye---------l~~LAr~ 151 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYE---------VYQLARK 151 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHH---------HHHHHHH
Confidence 211 000 000 012222222 3344555666545554 5555554442 3334445
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhh--C----CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLR--D----SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~--~----~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
...+..+||+++|++++.+|...|...+. .+..+.+...|+... . .+..+|+.+..+++-...+.+.+...+
T Consensus 152 ~~~~~~~V~ld~ple~~l~RN~~R~~~v~-devie~m~~r~E~P~~~~nrWd~pl~~v~~~~~~~~~~~~~~~~~~~~~ 229 (340)
T TIGR03575 152 YSLGFCQLFLDCPVESCLLRNKQRPVPLP-DETIQLMGRKIEKPNPEKNAWEHNSLVIQSSACISEDSLEVTDLLNTAL 229 (340)
T ss_pred hCCCEEEEEEeCCHHHHHHHHhcCCCCCC-HHHHHHHHHHhcCCCCCCCCCCCCeEEEecCccccccchhHHHHHHHHH
Confidence 55677999999999999999998865443 345555656665432 1 245777764333222223444444443
No 86
>PRK00625 shikimate kinase; Provisional
Probab=99.12 E-value=8.7e-09 Score=85.44 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=79.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh-----HHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN-----RWEKRS 130 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~-----r~~~~~ 130 (259)
+.|++.|++||||||+++.|+++++ +.++.++ +.|++-.......+. . -.|... |.....
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D---------~~I~~~~g~~~~~~i-~--eif~~~Ge~~fr~~E~~ 65 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLS---LPFFDTD---------DLIVSNYHGALYSSP-K--EIYQAYGEEGFCREEFL 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC---CCEEEhh---------HHHHHHhCCCCCCCH-H--HHHHHHCHHHHHHHHHH
Confidence 3599999999999999999999994 4444322 222221110000000 0 001100 100011
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c---c-hHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y---E-HLEF 204 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~---e-~~~~ 204 (259)
.++ .+..+..||..+.-. . .+.+.... +.....+|||++|++++.+|+..|+.. . + -.+.
T Consensus 66 ~l~-~l~~~~~VIs~GGg~---~------~~~e~~~~----l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~l 131 (173)
T PRK00625 66 ALT-SLPVIPSIVALGGGT---L------MIEPSYAH----IRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEI 131 (173)
T ss_pred HHH-HhccCCeEEECCCCc---c------CCHHHHHH----HhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHH
Confidence 122 223344566443110 0 11122221 223468999999999999999876421 1 1 1344
Q ss_pred HHHHHHHHHhhhCC---CeEEEcCC-CCHHHHHHHHHHHH
Q 024986 205 QRKVAQCYQMLRDS---SWKIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 205 ~~rv~~~y~~l~~~---~~~vIDa~-~s~eev~~~I~~~i 240 (259)
+++....|++.++. --++++|+ .++-++.+.++..+
T Consensus 132 l~~R~~~Y~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 132 LSQRIDRMRSIADYIFSLDHVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred HHHHHHHHHHHCCEEEeCCCcccCCCCCHHHHHHHHHHHh
Confidence 44555677776651 11234443 57777777776654
No 87
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.11 E-value=7.1e-10 Score=88.01 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--C--CCHHHHHHHHHHhHHHHH-HH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--H--LDDHTIHLLFSANRWEKR-SM 131 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--~--~~~~~~~ll~~a~r~~~~-~~ 131 (259)
+|++.|++||||||+++.|++.+. . ..+. .+.++.-+.... . ......... ++.. ..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~--~~i~--------~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 62 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---A--VVIS--------QDEIRRRLAGEDPPSPSDYIEAEERA-----YQILNAA 62 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---E--EEEE--------HHHHHHHHCCSSSGCCCCCHHHHHHH-----HHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---C--EEEe--------HHHHHHHHcccccccchhHHHHHHHH-----HHHHHHH
Confidence 689999999999999999998885 2 2222 133333333211 1 111111111 1111 34
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG 196 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~ 196 (259)
+...+..|..+|+|......-. ...+..+......+..+|+|++|++++.+|+..|.
T Consensus 63 ~~~~l~~g~~~vvd~~~~~~~~--------r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (143)
T PF13671_consen 63 IRKALRNGNSVVVDNTNLSREE--------RARLRELARKHGYPVRVVYLDAPEETLRERLAQRN 119 (143)
T ss_dssp HHHHHHTT-EEEEESS--SHHH--------HHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTH
T ss_pred HHHHHHcCCCceeccCcCCHHH--------HHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcC
Confidence 5567788988999865443211 12333444455667899999999999999998763
No 88
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=99.10 E-value=8.1e-11 Score=94.92 Aligned_cols=119 Identities=24% Similarity=0.405 Sum_probs=80.3
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCeEEEcccccc-hhhhhcC---CC-CCH-------HHHHhhhccCCC-CCEEEEEeCCH
Q 024986 119 LLFSANRWEKRSMMEAKLKAGTTLIVDRYSYS-GVAFSSA---KG-IDI-------EWCKAPEIGLLA-PDSVLYLDIPP 185 (259)
Q Consensus 119 ll~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s-~~ay~~~---~g-l~~-------~~~~~~~~~~~~-PdlvI~Ld~~~ 185 (259)
+.|...|+.+.. . ...+.++|+||+++| ..+|... .| ++. ++...+....+. ||++|||++||
T Consensus 3 ~~~l~~R~~~~~---~-~~~~~~~i~eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~~~~ 78 (146)
T PF01712_consen 3 LYFLLSRFEQYK---E-LNTKQNVIMERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIPKSPDLIIYLDASP 78 (146)
T ss_dssp HHHHHHHHHHHH---H-STSSSEEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCHH-SEEEEEE--H
T ss_pred HHHHHHHHHHHH---H-HhcCCCceecCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccCCeEEEEeCCH
Confidence 455566765432 1 456789999999998 6666442 23 232 233344456777 99999999999
Q ss_pred HHHHhhcCCCCCCcc---hHHHHHHHH-HHHHhhhC----CCeEEEcCCC-CHHHHHHHHHHHHH
Q 024986 186 EKAAERGGYGGERYE---HLEFQRKVA-QCYQMLRD----SSWKIIDACQ-SIEDVEKQLKEIVL 241 (259)
Q Consensus 186 e~~~~R~~~R~d~~e---~~~~~~rv~-~~y~~l~~----~~~~vIDa~~-s~eev~~~I~~~i~ 241 (259)
+++.+|+..|+..+| +.+|++++. +.|..+.. .++++||++. ++++..+.+..+++
T Consensus 79 e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~~ 143 (146)
T PF01712_consen 79 ETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVIN 143 (146)
T ss_dssp HHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHHC
T ss_pred HHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHHH
Confidence 999999999987777 479999999 79987642 4788999864 66666666665543
No 89
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.10 E-value=2.1e-09 Score=105.79 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=94.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
..++.+|+++|++||||||+++.|+++|...|..+..++ ++.++..+..+...++......+ .+. ...
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~--------~D~~r~~l~~~~~~~~~~r~~~~--~~l--~~~ 524 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLD--------GDNVRHGLNRDLGFSDADRVENI--RRV--AEV 524 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEc--------ChhhhhccCCCCCCCHHHHHHHH--HHH--HHH
Confidence 346899999999999999999999999987777666554 24444444322222221111000 010 011
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-----chHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-----EHLEFQR 206 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-----e~~~~~~ 206 (259)
....+.+|.+||+|-... +.. ..+++..+... .+-.+|||++|++++.+|.. |+ -+ +...-+.
T Consensus 525 a~~~~~~G~~Vivda~~~----~~~----~R~~~r~l~~~--~~~~~v~L~~~~e~~~~R~~-r~-L~~~~~~~~l~~l~ 592 (632)
T PRK05506 525 ARLMADAGLIVLVSFISP----FRE----ERELARALHGE--GEFVEVFVDTPLEVCEARDP-KG-LYAKARAGEIKNFT 592 (632)
T ss_pred HHHHHhCCCEEEEECCCC----CHH----HHHHHHHhccc--CCeEEEEECCCHHHHHhhCC-cc-hhhhcccccccccc
Confidence 223446788999983211 110 01333322211 25589999999999999953 21 11 0000011
Q ss_pred HHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 024986 207 KVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 207 rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~ 242 (259)
.++..|.... ...++||+ ..++++++++|.+.+..
T Consensus 593 ~~r~~y~~P~-~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 593 GIDSPYEAPE-NPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred ccccCCCCCC-CCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1222343211 23478887 67999999999998864
No 90
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.09 E-value=3.1e-09 Score=87.21 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=51.0
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
...|-..|||++|++++.+|+..|...+.+.+.+..-...++.+.. ..+++||++.+++++++++...+.
T Consensus 88 ~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 88 GNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred cCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 4567789999999999999998875434344444433333443332 358999999999999999998874
No 91
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.09 E-value=2.7e-09 Score=91.00 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=50.0
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh--hCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML--RDSSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l--~~~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
.+|.+|++++|+++..+|+..|+. ....+..+++..++... .+...++|++++++|++.++|.+.+...+
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~~-~s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRGM-GSREEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 469999999999999999988743 22345566665433211 11123678888999999999999887654
No 92
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.08 E-value=9.6e-09 Score=86.85 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=49.6
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHH--hhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQ--MLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~--~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
..|.++|+++|+++..+|+..|+. +...+...++..+.. +.....-++|++++++++..++|.+.+..+++.
T Consensus 121 ~~D~vi~V~a~~e~r~~RL~~R~g-~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 121 LCDATVTVDSDPEESILRTISRDG-MKKEDVLARIASQLPITEKLKRADYIVRNDGNREGLKEECKILYSTLLKK 194 (196)
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 459999999999999999988732 333345555543211 001112267888889999999999988776653
No 93
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.07 E-value=5.7e-10 Score=90.22 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=99.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEE---EEecCCCCChHHHHHHHHHhCCCCCCH-----HHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVE---LWRFPDRTTSVGQMISAYLSNQSHLDD-----HTIHLLFSA 123 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~---~~~~p~~~~~~g~~ir~~l~~~~~~~~-----~~~~ll~~a 123 (259)
.+|.+|++.||+|+||-|++..++..+...+ +.++ +++..+-+ ++. ...++. ....-.|+.
T Consensus 3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~Ed-------H~avs~~eF~~~a~~g~FAl 72 (192)
T COG3709 3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GED-------HDALSEAEFNTRAGQGAFAL 72 (192)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---ccc-------ccccCHHHHHHHhhcCceeE
Confidence 3799999999999999999999999997653 3222 12211111 110 001111 111112222
Q ss_pred hHHHH-----H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC
Q 024986 124 NRWEK-----R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE 197 (259)
Q Consensus 124 ~r~~~-----~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d 197 (259)
.+..+ + ..|...+.+|.+||..++ .+|. ..+. ..++ --+++.|.++|+++.+|+..|+.
T Consensus 73 sWqAhGL~Ygip~eId~wl~~G~vvl~NgS----Ra~L-------p~ar---rry~-~Llvv~ita~p~VLaqRL~~RGR 137 (192)
T COG3709 73 SWQAHGLSYGIPAEIDLWLAAGDVVLVNGS----RAVL-------PQAR---RRYP-QLLVVCITASPEVLAQRLAERGR 137 (192)
T ss_pred EehhcCccccCchhHHHHHhCCCEEEEecc----Hhhh-------HHHH---Hhhh-cceeEEEecCHHHHHHHHHHhcc
Confidence 22111 1 356677889999998754 2221 1111 1222 23799999999999999987653
Q ss_pred CcchHHHHHHHHHHHHh-hhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 198 RYEHLEFQRKVAQCYQM-LRDSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 198 ~~e~~~~~~rv~~~y~~-l~~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
.- ..+...++...-.. ..+.++++||+++++|...++..+.+...
T Consensus 138 Es-~eeI~aRL~R~a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 138 ES-REEILARLARAARYTAGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred CC-HHHHHHHHHhhcccccCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 21 23555665443221 23468999999999999999988877643
No 94
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.07 E-value=1.2e-08 Score=86.49 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=50.3
Q ss_pred CCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 024986 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~ 245 (259)
...|.+||+++|+++..+|+..|+ .+...+...++..+... -......+||++++++++.+++...+..++.
T Consensus 124 ~~~D~vi~V~a~~e~ri~Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 124 RKMDLVVVVDVDVEERVRRLVEKR-GLDEDDARRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred ccCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 357999999999999999988763 23333455554432211 0112347899999999999999998877654
No 95
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=8.1e-09 Score=83.01 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH----H
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS----M 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~----~ 131 (259)
-.|++.|+.||||||+++.|.++|....+....+ ..+ +.++++ ..+..+++ .+||.++. .
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~-----Hp~--~NveKM-~~GipLnD--------~DR~pWL~~i~~~ 76 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL-----HPP--ANVEKM-TQGIPLND--------DDRWPWLKKIAVE 76 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccC-----CCH--HHHHHH-hcCCCCCc--------ccccHHHHHHHHH
Confidence 3799999999999999999999996433222111 111 334444 33333332 12333221 1
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hh--ccCCCC---CEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PE--IGLLAP---DSVLYLDIPPEKAAERGGYGGERYEHLEFQ 205 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~--~~~~~P---dlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~ 205 (259)
....+..|..||+- +|.+..++ .+.+.. +. +....| -.+|||.++.|++.+|+..|...|.+.+.+
T Consensus 77 ~~~~l~~~q~vVlA---CSaLKk~Y-----RdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~ll 148 (191)
T KOG3354|consen 77 LRKALASGQGVVLA---CSALKKKY-----RDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLL 148 (191)
T ss_pred HHHHhhcCCeEEEE---hHHHHHHH-----HHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHH
Confidence 22334456666653 34443221 122221 11 112233 368999999999999999987777765554
Q ss_pred HHHHHHHHhhhC-----CCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLRD-----SSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 206 ~rv~~~y~~l~~-----~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
.++|..+.. .+++.||.. .++|+++..|.+-+..
T Consensus 149 ---eSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 149 ---ESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred ---HHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 456655531 368999975 9999999999987754
No 96
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.07 E-value=3.4e-09 Score=102.82 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=91.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
++|.+|+|.|++||||||+++.|++.|.. .|..+..++ ++.+++.+..+..+........+ .+.. ..
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD--------~D~vr~~l~ge~~f~~~er~~~~--~~l~--~~ 457 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLD--------GDVVRKHLSSELGFSKEDRDLNI--LRIG--FV 457 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeC--------CcHHHHhccCCCCCCHHHHHHHH--HHHH--HH
Confidence 46789999999999999999999999986 666666554 23344444332223221111110 0100 11
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC---CCCcchHHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG---GERYEHLEFQRKV 208 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R---~d~~e~~~~~~rv 208 (259)
....++.|.+||+|--. .|...+ ..+...+.. .. .-++|||++|++++.+|.... ..+.+...-+...
T Consensus 458 a~~v~~~Gg~vI~~~~~----p~~~~R---~~nr~llk~-~g-~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~ 528 (568)
T PRK05537 458 ASEITKNGGIAICAPIA----PYRATR---REVREMIEA-YG-GFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGI 528 (568)
T ss_pred HHHHHhCCCEEEEEeCC----chHHHH---HHHHHHHhh-cC-CEEEEEEcCCHHHHHHhccccccccchhchhhccccc
Confidence 12345678899997321 111101 112211221 11 236899999999999997531 0111111001011
Q ss_pred HHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 209 AQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 209 ~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
+..|..+. ..-++||++ .++++++++|.+.+.+
T Consensus 529 R~~yy~p~-~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 529 SDPYEPPA-NPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred cccccCCC-CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 12222211 134788976 6999999999988754
No 97
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.06 E-value=9.3e-09 Score=86.86 Aligned_cols=164 Identities=12% Similarity=0.133 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec----C-CCCChHHHHHHHHHh-----CCC-CCCHHHHH-HHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF----P-DRTTSVGQMISAYLS-----NQS-HLDDHTIH-LLFSA 123 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~----p-~~~~~~g~~ir~~l~-----~~~-~~~~~~~~-ll~~a 123 (259)
++|+|+|++||||||+++.|++.+ |+.++..+. . ..+++.++.+.+.+. ..+ .++..... ++|..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d 78 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND 78 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence 479999999999999999999877 455543211 0 113444555555442 123 34432211 22211
Q ss_pred -hHHHHH---------HHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHh
Q 024986 124 -NRWEKR---------SMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAE 190 (259)
Q Consensus 124 -~r~~~~---------~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~ 190 (259)
.....+ ..+...+. ....||+|-- +.|.. . .....|.+|++++|+++..+
T Consensus 79 ~~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~p----ll~E~------~-------~~~~~D~ii~V~a~~e~r~~ 141 (195)
T PRK14730 79 PEERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIP----LLFEA------K-------LTDLCSEIWVVDCSPEQQLQ 141 (195)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeH----HhcCc------c-------hHhCCCEEEEEECCHHHHHH
Confidence 000111 11111111 1345665521 11110 0 01246899999999999999
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 191 RGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 191 R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
|+..|+ .+...++..++..+... -....-++|++++++++..+++.+.+
T Consensus 142 Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 142 RLIKRD-GLTEEEAEARINAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred HHHHcC-CCCHHHHHHHHHhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 998774 33334555555443211 01122358899999999999998765
No 98
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=99.04 E-value=6.8e-09 Score=91.23 Aligned_cols=163 Identities=19% Similarity=0.265 Sum_probs=99.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
..+.+|+|+|.|||||+.+++.|.+.++.+|+.|..+..|.. -+. .. +. ..|+.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~----eE~-----~~-----p~-------lWRfw----- 107 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSA----EEL-----DH-----DF-------LWRIH----- 107 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH----HHH-----cC-----ch-------HHHHH-----
Confidence 468999999999999999999999999999998887665541 011 00 10 12221
Q ss_pred HHHH-hcCCeEEEcccccchhhhhcCCCC-C-HHHH------Hhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCC---
Q 024986 133 EAKL-KAGTTLIVDRYSYSGVAFSSAKGI-D-IEWC------KAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--- 197 (259)
Q Consensus 133 ~~~l-~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~~------~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d--- 197 (259)
..+ ..|.+.|+||++|.........|. + .+|- ..++ ......-+-|||+++.++..+|+..|.+
T Consensus 108 -~~lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~ 186 (264)
T TIGR03709 108 -KALPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPT 186 (264)
T ss_pred -HhCCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCc
Confidence 223 569999999999987655443332 2 2221 1222 2234455899999999999999976521
Q ss_pred -Cc--ch-----HHHHHHHHHHHHhhh------CCCeEEEcCCCC---HHHHHHHHHHHHHH
Q 024986 198 -RY--EH-----LEFQRKVAQCYQMLR------DSSWKIIDACQS---IEDVEKQLKEIVLD 242 (259)
Q Consensus 198 -~~--e~-----~~~~~rv~~~y~~l~------~~~~~vIDa~~s---~eev~~~I~~~i~~ 242 (259)
++ .. .+.......+|+++- ..+|++|+++.. --.|.+.|.+.|..
T Consensus 187 k~Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~ 248 (264)
T TIGR03709 187 KNWKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALES 248 (264)
T ss_pred ccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 11 11 122233344454431 268999998632 22344444444443
No 99
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=99.03 E-value=3.7e-09 Score=86.29 Aligned_cols=157 Identities=22% Similarity=0.164 Sum_probs=65.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCC-CCHHHHHHHHHHhHHHH-HHHHHHH
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH-LDDHTIHLLFSANRWEK-RSMMEAK 135 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~-~~~~~~~ll~~a~r~~~-~~~i~~~ 135 (259)
|+|+|++|+||||+++.|+++ |+.++ .++. -+.+......... +........+.....+. ..... .
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v--~E~a-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 69 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV--PEYA-----REIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLEAEA-S 69 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE----TT-----HHHHHHSSSS-TTSS-TT-THHHHHHH--HHHHHHHH-H
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE--eecH-----HHHHHHhccccchhhhhcchHHHHHHHHHHHHHHHHH-h
Confidence 899999999999999999987 66544 3332 1222222211111 11100111111111111 11111 1
Q ss_pred HhcCCeEEEcccccchhhhhcCC-CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc-hHHHHHHHHHHHH
Q 024986 136 LKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKVAQCYQ 213 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~~~-gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e-~~~~~~rv~~~y~ 213 (259)
.....+||+||.+.+.++|.... +-..+.+.... .....|++|+|..++.. ..-..|....+ ...+.+.+.+.|.
T Consensus 70 ~~~~~~vi~Dr~~~d~~aY~~~~~~~~~~~l~~~~-~~~~yd~v~~l~~~~~~--~~D~~R~~~~~~r~~~~~~~~~~l~ 146 (163)
T PF13521_consen 70 AKSSDVVICDRGPLDTLAYSEFYFGDYPEELEREA-RLSRYDLVFLLPPDPPW--EQDGVRPEDPEERERIDELLKELLE 146 (163)
T ss_dssp HH-SSEEEESS-HHHHHHHHHHHHS---HHHHHHH-HHS--SEEEEEE------------------SHHHHHHHHHHHHH
T ss_pred hcCCCcEEEeCChHHHHHHHHHhcCcchHHHHHHH-HhCCCCEEEEeCCcccc--CCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 24578999999999999997532 21123332221 13457999999877744 22122222222 2345555555555
Q ss_pred hhhCCCeEEEcCCCCHHH
Q 024986 214 MLRDSSWKIIDACQSIED 231 (259)
Q Consensus 214 ~l~~~~~~vIDa~~s~ee 231 (259)
+. ..++++|+ .+|.+|
T Consensus 147 ~~-~~~~~~v~-~gs~~e 162 (163)
T PF13521_consen 147 RH-GIPYIIVP-SGSIEE 162 (163)
T ss_dssp GG-G---EEEE--SSHHH
T ss_pred HC-CCeEEEeC-CCChhh
Confidence 53 24677776 556654
No 100
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.02 E-value=4e-09 Score=88.04 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=90.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSAN 124 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~ 124 (259)
+++|+|.||+||||+|+++.|.+.+.. -++.+.+ ++.|..+..- .+.+......+. +-.+. .+..+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~-fve~~---~~~g~ 77 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGL-FLEWG---EYSGN 77 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCC-eEEEE---EEcCc
Confidence 678999999999999999999998642 1222222 2333211111 123333333221 10000 00001
Q ss_pred HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEe-CCHHHHHhhcCCCCCCcchH
Q 024986 125 RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLD-IPPEKAAERGGYGGERYEHL 202 (259)
Q Consensus 125 r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld-~~~e~~~~R~~~R~d~~e~~ 202 (259)
.+.. ...+...+++|+++|+|-.+.. +.++....+.| ++|||. .+.+++.+|+..|++.- ..
T Consensus 78 ~YGt~~~~i~~~~~~~~~~ild~~~~~--------------~~~l~~~~~~~-~vIfi~~~s~~~l~~rl~~R~~~~-~~ 141 (184)
T smart00072 78 YYGTSKETIRQVAEQGKHCLLDIDPQG--------------VKQLRKAQLYP-IVIFIAPPSSEELERRLRGRGTET-AE 141 (184)
T ss_pred CcccCHHHHHHHHHcCCeEEEEECHHH--------------HHHHHHhCCCc-EEEEEeCcCHHHHHHHHHhcCCCC-HH
Confidence 1111 1345667778999999865321 12222223344 788887 66677899998775432 23
Q ss_pred HHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 203 ~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+..+++..+-..... .+. +|+++ +.++..+++.+.|.+
T Consensus 142 ~i~~rl~~a~~~~~~~~~fd~-~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 142 RIQKRLAAAQKEAQEYHLFDY-VIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHHHHHHHHHHhhhccCCE-EEECc-CHHHHHHHHHHHHHh
Confidence 444555543332222 234 44444 799999999988864
No 101
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.01 E-value=1.9e-08 Score=90.88 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=84.4
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH-
Q 024986 50 NIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK- 128 (259)
Q Consensus 50 ~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~- 128 (259)
..++++..|+|.|++||||||+++.|++.| |++++... ..+.+.. .++.....-.+-...+..
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D---------~~i~~~~----G~~i~ei~~~~G~~~fr~~ 191 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARL---GVPFVELN---------REIEREA----GLSVSEIFALYGQEGYRRL 191 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHH---------HHHHHHh----CCCHHHHHHHHCHHHHHHH
Confidence 345688999999999999999999999998 45544211 1111110 111100000000000101
Q ss_pred -HHHHHHHHh-cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC-C--c---c
Q 024986 129 -RSMMEAKLK-AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE-R--Y---E 200 (259)
Q Consensus 129 -~~~i~~~l~-~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d-~--~---e 200 (259)
...+...+. .+..||..+. +.+. +...+.. +....++|||++|+++..+|+..|.. + . +
T Consensus 192 e~~~l~~ll~~~~~~VI~~Gg---g~v~------~~~~~~~----l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~ 258 (309)
T PRK08154 192 ERRALERLIAEHEEMVLATGG---GIVS------EPATFDL----LLSHCYTVWLKASPEEHMARVRAQGDLRPMADNRE 258 (309)
T ss_pred HHHHHHHHHhhCCCEEEECCC---chhC------CHHHHHH----HHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCC
Confidence 122333333 3445554321 1100 1111111 11245899999999999999975421 1 0 1
Q ss_pred hHHHH----HHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHH
Q 024986 201 HLEFQ----RKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 201 ~~~~~----~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l 244 (259)
..+.. ++....|.. .+ ++||++ .++++++++|.+.+...+
T Consensus 259 ~~e~i~~~~~~R~~~y~~---ad-~~I~t~~~s~ee~~~~I~~~l~~~~ 303 (309)
T PRK08154 259 AMEDLRRILASREPLYAR---AD-AVVDTSGLTVAQSLARLRELVRPAL 303 (309)
T ss_pred hHHHHHHHHHHHHHHHHh---CC-EEEECCCCCHHHHHHHHHHHHHHHh
Confidence 11222 222233432 22 578876 599999999999887654
No 102
>PLN02422 dephospho-CoA kinase
Probab=99.00 E-value=1.9e-08 Score=86.99 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=50.6
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
.-|.+|++++|+++..+|+..|+ .+...+...++..+... -....-++|++++++++..+++.+++...+
T Consensus 125 ~~D~vI~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 125 WTKPVVVVWVDPETQLERLMARD-GLSEEQARNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 46999999999999999998874 33334566666544311 111233688888999999999999887764
No 103
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.99 E-value=8.4e-08 Score=78.16 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=85.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC---------CCCHHHHHHH--HHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS---------HLDDHTIHLL--FSA 123 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~---------~~~~~~~~ll--~~a 123 (259)
.+.+++.|.||+||||+++.+.+.+ .++. ..++ |+.+-+.-...+ .+.......+ -++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~~~--ivNy-------G~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa 72 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VKHK--IVNY-------GDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAA 72 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hhce--eeeH-------hHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHH
Confidence 4889999999999999999999988 1222 2232 222211111100 1111111111 111
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC---CCCCcc
Q 024986 124 NRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY---GGERYE 200 (259)
Q Consensus 124 ~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~---R~d~~e 200 (259)
.| +. +.+.-+|+|.+---.....+..|++ .|+. ....||.++.|.+||+++..|-.. |...++
T Consensus 73 ~r------I~---~~~~~iivDtH~~IkTP~GylpgLP-~~Vl----~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~e 138 (189)
T COG2019 73 KR------IA---EMALEIIVDTHATIKTPAGYLPGLP-SWVL----EELNPDVIVLLEADPEEILERRLRDSRRDRDVE 138 (189)
T ss_pred HH------HH---HhhhceEEeccceecCCCccCCCCc-HHHH----HhcCCCEEEEEeCCHHHHHHHHhcccccccccc
Confidence 11 11 1222277886532111112224555 3432 245799999999999999877543 212233
Q ss_pred h---HHHHHHHHH--HH--HhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 024986 201 H---LEFQRKVAQ--CY--QMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 201 ~---~~~~~rv~~--~y--~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~ 242 (259)
. ..-++.+.. +| .-+....+.+|.. ++.+|+.+.+|...|..
T Consensus 139 s~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 139 SVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 2 222222222 22 2222356666654 68999999999988753
No 104
>PLN02199 shikimate kinase
Probab=98.99 E-value=8.8e-08 Score=85.30 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=85.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH--HH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK--RS 130 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~--~~ 130 (259)
.++.-|++.|++||||||+++.|++.+ |+.++..+ ..|.+.+. +..+..... .+-...+.. ..
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~L---g~~fIDtD---------~lIe~~~~-G~sI~eIf~--~~GE~~FR~~E~e 164 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVL---GYTFFDCD---------TLIEQAMN-GTSVAEIFV--HHGENFFRGKETD 164 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEehH---------HHHHHHhc-CCCHHHHHH--HhCHHHHHHHHHH
Confidence 457889999999999999999999998 45555322 22222211 111100000 000000101 12
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC--CCCC--c--ch---
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY--GGER--Y--EH--- 201 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~--R~d~--~--e~--- 201 (259)
.++........||.=+ .+.+ +..+-...+. --.+|||++|++++.+|+.. ...| . +.
T Consensus 165 ~L~~L~~~~~~VIStG---GG~V------~~~~n~~~L~-----~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~ 230 (303)
T PLN02199 165 ALKKLSSRYQVVVSTG---GGAV------IRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDA 230 (303)
T ss_pred HHHHHHhcCCEEEECC---Cccc------CCHHHHHHHh-----CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcch
Confidence 2333333344555311 1111 1111111111 24799999999999999874 1111 0 11
Q ss_pred --------HHHHHHHHHHHHhhhCCCeEEEc------------C-CCCHHHHHHHHHHHHHHHHhh
Q 024986 202 --------LEFQRKVAQCYQMLRDSSWKIID------------A-CQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 202 --------~~~~~rv~~~y~~l~~~~~~vID------------a-~~s~eev~~~I~~~i~~~l~~ 246 (259)
.+.++.....|.+ ++ ++|| + +.++++++.+|.+.+..++..
T Consensus 231 ~~~~~~~L~~L~~~R~plY~~-Ad---~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~ 292 (303)
T PLN02199 231 YSVAFKRLSAIWDERGEAYTN-AN---ARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK 292 (303)
T ss_pred hhhHHHHHHHHHHHHHHHHHh-CC---EEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 1222233345554 33 4555 3 589999999999999999864
No 105
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.98 E-value=7.4e-08 Score=81.90 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=48.6
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH-----HhhhCCCeEEEcCCC-CHHHHHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY-----QMLRDSSWKIIDACQ-SIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y-----~~l~~~~~~vIDa~~-s~eev~~~I~~~i~~~ 243 (259)
..|.++++.+|+++..+|+..|+ .+...+...++..+. ...++ .+||+++ +.++..+++.++++.+
T Consensus 128 ~~D~vi~V~a~~e~ri~Rl~~Rd-~~s~~~a~~ri~~Q~~~eek~~~aD---~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 128 YLKKVIVIKADLETRIRRLMERD-GKNRQQAVAFINLQISDKEREKIAD---FVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCC---EEEECcCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999998763 233345555554432 22233 7888888 9999999999988776
No 106
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.97 E-value=4.6e-08 Score=85.36 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh---hCCCeEEEcCC--CCHHHHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDAC--QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l---~~~~~~vIDa~--~s~eev~~~I~~~i~~ 242 (259)
..|.++++++|+++..+|+..|+ .+...+..+++..+.... ...+ .+|+++ +++++..++|.+.+..
T Consensus 136 ~~D~iv~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~~ek~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 136 FVSASVVVSCSEERQIERLRKRN-GFSKEEALQRIGSQMPLEEKRRLAD-YIIENDSADDLDELRGSVCDCVAW 207 (244)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence 35999999999999999998774 333345555554432111 1123 567777 9999999999998755
No 107
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.97 E-value=4.4e-08 Score=93.64 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=26.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..++++|+|.|++||||||+++.|+++|+
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34889999999999999999999999994
No 108
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.96 E-value=1.4e-07 Score=79.90 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=44.0
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCC----CC--CCcchHHHHHHHHHH-HHhh-------h-CCCeEEEcC-CCCHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGY----GG--ERYEHLEFQRKVAQC-YQML-------R-DSSWKIIDA-CQSIEDVEKQ 235 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~----R~--d~~e~~~~~~rv~~~-y~~l-------~-~~~~~vIDa-~~s~eev~~~ 235 (259)
+|.-++.|||+++||+..+|--. .+ ..|| +.++.+.+. +..- . ..+-++||+ +.++|||+++
T Consensus 135 ~PdA~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e--~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~ 212 (222)
T COG0283 135 FPDAELKIFLTASPEERAERRYKQLQAKGFSEVFE--ELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEK 212 (222)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHhccCcchHH--HHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHH
Confidence 46667999999999998776421 11 1122 222222221 1111 1 146789997 5899999999
Q ss_pred HHHHHHHH
Q 024986 236 LKEIVLDQ 243 (259)
Q Consensus 236 I~~~i~~~ 243 (259)
|.+.+.+.
T Consensus 213 il~~~~~~ 220 (222)
T COG0283 213 ILELIRQK 220 (222)
T ss_pred HHHHHHHh
Confidence 99988743
No 109
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.96 E-value=2e-08 Score=80.70 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL 136 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l 136 (259)
+|+|.|++||||||+++.|++.++. .++ +.- ..........+..+......... .+..... ......+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~---~~i--~~D---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l 68 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGA---PFI--DGD---DLHPPANIAKMAAGIPLNDEDRW-PWLQALT---DALLAKL 68 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCC---EEE--eCc---ccccHHHHHHHHcCCCCCccchh-hHHHHHH---HHHHHHH
Confidence 5889999999999999999998743 222 210 00011111111211111110000 1111110 1111222
Q ss_pred -hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh
Q 024986 137 -KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML 215 (259)
Q Consensus 137 -~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l 215 (259)
..|..||+|-...+. .+ .+.+..+. ...+..+|||++|++++.+|+..|....-+.+.+......|+..
T Consensus 69 ~~~~~~vVid~~~~~~-~~-------r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~p 138 (150)
T cd02021 69 ASAGEGVVVACSALKR-IY-------RDILRGGA--ANPRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPP 138 (150)
T ss_pred HhCCCCEEEEeccccH-HH-------HHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCC
Confidence 467677777443221 11 12222222 24566899999999999999988743322234444444444433
Q ss_pred h--CCCeEEEc
Q 024986 216 R--DSSWKIID 224 (259)
Q Consensus 216 ~--~~~~~vID 224 (259)
. +..+++||
T Consensus 139 ~~~~~~~~~~~ 149 (150)
T cd02021 139 GEDEEDVIVID 149 (150)
T ss_pred CCCCCCeEEcc
Confidence 2 13566666
No 110
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.95 E-value=2.4e-08 Score=80.72 Aligned_cols=116 Identities=18% Similarity=0.105 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAKL 136 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~l 136 (259)
+|+|.|++||||||+++.|++.+...|..+..++ ++.+++.+.....+.+....-.+ .+. ....+..+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~--------~d~~r~~l~~~~~~~~~~~~~~~--~~~--~~~a~~l~ 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD--------GDNVRHGLNKDLGFSREDREENI--RRI--AEVAKLLA 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc--------CHHHHHhhhhccCCCcchHHHHH--HHH--HHHHHHHH
Confidence 4789999999999999999999987776665543 23344433322112211000000 010 11223344
Q ss_pred hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 024986 137 KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY 194 (259)
Q Consensus 137 ~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~ 194 (259)
++|.+||+|..... ..+ ..++..+.. ..+...|||++|++++.+|..+
T Consensus 69 ~~G~~VIid~~~~~-~~~-------R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 DAGLIVIAAFISPY-RED-------REAARKIIG--GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred hCCCEEEEccCCCC-HHH-------HHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence 67899999843221 111 122222222 4677899999999999999643
No 111
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=98.95 E-value=4.7e-10 Score=96.80 Aligned_cols=165 Identities=22% Similarity=0.325 Sum_probs=89.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
.+.+|+|+|+|||||+.+++.|.+.++.+|+.|..+..|. .+- ...+ + ..|+.. -.
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt-----~eE----~~~p--~----------lwRfw~---~l 85 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPT-----DEE----LRRP--F----------LWRFWR---AL 85 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-------HHH----HTS---T----------THHHHT---TS
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCC-----hhH----cCCC--c----------HHHHHH---hC
Confidence 4689999999999999999999999999999888766553 111 1111 0 022211 01
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCC-CCH-HH------HHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC----CC
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKG-IDI-EW------CKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG----ER 198 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~g-l~~-~~------~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~----d~ 198 (259)
| ..|.++|+||++|+........| ++. +| +..++ ......-+-|||+++.++..+|+..+. .+
T Consensus 86 P--~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~ 163 (228)
T PF03976_consen 86 P--ARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKR 163 (228)
T ss_dssp ----TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCG
T ss_pred C--CCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcccc
Confidence 3 56999999999998765443333 232 12 12222 223445589999999999999987541 11
Q ss_pred c--ch-----HHHHHHHHHHHHhh-h-----CCCeEEEcCCCC---HHHHHHHHHHHHHHHH
Q 024986 199 Y--EH-----LEFQRKVAQCYQML-R-----DSSWKIIDACQS---IEDVEKQLKEIVLDQV 244 (259)
Q Consensus 199 ~--e~-----~~~~~rv~~~y~~l-~-----~~~~~vIDa~~s---~eev~~~I~~~i~~~l 244 (259)
+ .+ .+...+...+|.++ . ..+|++|+++.. --.|.+.|.+.|...+
T Consensus 164 wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~l~~~le~~~ 225 (228)
T PF03976_consen 164 WKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKRYARLAVARTLLDALEKAL 225 (228)
T ss_dssp GG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHHHHHHHHHHHHHHHhHhhc
Confidence 1 11 11122233344432 1 269999998732 2334455555554443
No 112
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.93 E-value=7.4e-09 Score=87.79 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH---HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 024986 175 PDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC---YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~---y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~ 248 (259)
.|.+|++++|+++..+|+..|+ .....+...++..+ .+.+. ..-.+||++.+++...++|.+.+...+....
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~-~~~~e~~~~~~~~Q~~~~ek~~-~ad~vi~n~~~i~~l~~~i~~~~~~~~~~~~ 198 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRD-GLDEEDAEARLASQRDLEEKLA-LADVVIDNDGSIENLLEQIEKLLKELLGLVL 198 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcC-CCCHHHHHHHHHhcCCHHHHHh-hcCChhhcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999999999999886 22211222222211 11111 1236899999999999999998887766443
No 113
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.93 E-value=1.4e-08 Score=84.09 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHh-----CCCCC---------CHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLS-----NQSHL---------DDHTIHLL 120 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~-----~~~~~---------~~~~~~ll 120 (259)
|.+|++-|++.|||||+++.|.+.+.. +..++. .+.+.+.+. ....+ .+.. ..+
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~---p~~~l~--------~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~ 68 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPE---PWLHLS--------VDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLF-RRL 68 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEE--------HHHHHHHS-GGGGTSTTSEEEETTSEEE-HHH-HHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcC---CeEEEe--------cChHHhhcCcccccCCccccccccCCchhHHH-HHH
Confidence 579999999999999999999998863 222222 122222111 11111 1211 112
Q ss_pred HHHhHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHH-Hhhhc-cCCCCCEEEEEeCCHHHHHhhcCCCCCC
Q 024986 121 FSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWC-KAPEI-GLLAPDSVLYLDIPPEKAAERGGYGGER 198 (259)
Q Consensus 121 ~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~-~~~~~-~~~~PdlvI~Ld~~~e~~~~R~~~R~d~ 198 (259)
+.+. ...+....+.|..||+|-.+... .|+ +.+.. ....|-+.|-+.+|++++.+|-..|+||
T Consensus 69 ~~~~----~~~iaa~a~aG~~VIvD~v~~~~-----------~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR 133 (174)
T PF07931_consen 69 YAAM----HAAIAAMARAGNNVIVDDVFLGP-----------RWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDR 133 (174)
T ss_dssp HHHH----HHHHHHHHHTT-EEEEEE--TTT-----------HHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred HHHH----HHHHHHHHhCCCCEEEecCccCc-----------HHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCc
Confidence 2211 13455566789999999554322 222 11211 1356889999999999999998888887
Q ss_pred cchHHHHHHHHHHHHhhhC--CCeEEEcCC-CCHHHHHHHHHHHH
Q 024986 199 YEHLEFQRKVAQCYQMLRD--SSWKIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 199 ~e~~~~~~rv~~~y~~l~~--~~~~vIDa~-~s~eev~~~I~~~i 240 (259)
.... -..+|...-. .--+.|||+ .+++|.+++|.+.+
T Consensus 134 ~~G~-----a~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 134 PIGL-----AAWQAEHVHEGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp STTH-----HHHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred chHH-----HHHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 5431 1122322211 112679987 69999999998765
No 114
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.91 E-value=8.8e-09 Score=82.52 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=90.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH--
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS-- 130 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~-- 130 (259)
.+|.+|+|+|.+||||||+|..|.+.|..+|.....++ |+.+|.-+... ++ +-+.+|.+.++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LD--------GDNvRhGLN~D--L~------F~a~dR~ENIRRi 92 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILD--------GDNVRHGLNKD--LG------FKAEDRNENIRRI 92 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEec--------Ccccccccccc--cC------cchhhhhhhHHHH
Confidence 58999999999999999999999999998887665543 33344443321 21 11234555432
Q ss_pred -HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHHHHH
Q 024986 131 -MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQR 206 (259)
Q Consensus 131 -~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~ 206 (259)
.+....+ .-.||+=-++.|. |. .|.+..+.+... .+.+-||.|+|.+++.+|-+++. .|-....-+.
T Consensus 93 geVaKLFA-Dag~iciaSlISP--YR----~dRdacRel~~~--~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFT 163 (207)
T KOG0635|consen 93 GEVAKLFA-DAGVICIASLISP--YR----KDRDACRELLPE--GDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFT 163 (207)
T ss_pred HHHHHHHh-ccceeeeehhcCc--hh----ccHHHHHHhccC--CCeEEEEecCcHHHhhccCchhHHHHHhcccccccc
Confidence 2333332 2234543344443 32 233444443322 25578999999999999976531 0000000011
Q ss_pred HHHHHHHhhhCCCeEEEc--CCCCHHHHHHHHHHHHHH
Q 024986 207 KVAQCYQMLRDSSWKIID--ACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 207 rv~~~y~~l~~~~~~vID--a~~s~eev~~~I~~~i~~ 242 (259)
-+..-|+...+. -+++- .+-++++.++.|.+.+.+
T Consensus 164 GIddPYEaP~~c-Ei~l~~~~~~sp~~mae~iv~YL~~ 200 (207)
T KOG0635|consen 164 GIDDPYEAPLNC-EIVLKSHESSSPEEMAEIIVSYLDN 200 (207)
T ss_pred cCCCcccCCCCc-EEEEccCCCCCHHHHHHHHHHHHhh
Confidence 122233322222 23443 345777788888776653
No 115
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.89 E-value=6.6e-08 Score=82.14 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=27.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
++.++.+|+|.|++||||||+++.|.+.+.
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346889999999999999999999999984
No 116
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.88 E-value=2.2e-08 Score=83.81 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=42.2
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH---HhhhCCCeEEEcCCCCHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY---QMLRDSSWKIIDACQSIEDVEKQLK 237 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y---~~l~~~~~~vIDa~~s~eev~~~I~ 237 (259)
..|.++++++|+++..+|+..|+. +...+..+++..+. .... ..-.+|+++.++|+..+++.
T Consensus 123 ~~D~vv~V~~~~~~~~~Rl~~R~~-~s~~~~~~r~~~q~~~~~~~~-~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 123 LCDRVIVVDVSPQLQLERLMQRDN-LTEEEVQKRLASQMDIEERLA-RADDVIDNSATLADLVKQLE 187 (188)
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHhcCCHHHHHH-hCCEEEECCCCHHHHHHHHh
Confidence 468999999999999999987742 22234444544321 1111 13367888899999998875
No 117
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.87 E-value=5.1e-08 Score=94.39 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=86.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
+-..|++.|++||||||+.+.|++.|+ ++++.++.-- ....|..|.+++...+ +.-+ |....+.++
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~i-e~~~g~si~eif~~~G------e~~F----R~~E~~~l~ 70 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEI-EREIGMSIPSYFEEYG------EPAF----REVEADVVA 70 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHH-HHHHCcCHHHHHHHHH------HHHH----HHHHHHHHH
Confidence 456799999999999999999999994 4555332100 0011222333332211 0000 111112233
Q ss_pred HHHhcCCeEEE-cccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--c-----ch-HHH
Q 024986 134 AKLKAGTTLIV-DRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--Y-----EH-LEF 204 (259)
Q Consensus 134 ~~l~~g~~VI~-DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~-----e~-~~~ 204 (259)
..+.....||. .+... .. ..+.+.+..+.+ .--.+|||++|++++.+|+..+..| + +. .+.
T Consensus 71 ~~~~~~~~VIs~GGG~v----~~---~~n~~~L~~~~~---~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l 140 (542)
T PRK14021 71 DMLEDFDGIFSLGGGAP----MT---PSTQHALASYIA---HGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKL 140 (542)
T ss_pred HHHhcCCeEEECCCchh----CC---HHHHHHHHHHHh---cCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHH
Confidence 33333344552 22111 00 000122221111 1238999999999999998643222 1 11 233
Q ss_pred HHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 205 QRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 205 ~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
+++....|.+.++ ++||++ .++++++++|.+.+..
T Consensus 141 ~~~R~~~Y~~~Ad---~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 141 FKQRDPVFRQVAN---VHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred HHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHHh
Confidence 3444556766554 677764 7999999999998864
No 118
>PRK12338 hypothetical protein; Provisional
Probab=98.87 E-value=1.6e-07 Score=84.71 Aligned_cols=168 Identities=10% Similarity=0.059 Sum_probs=87.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC-----------------------C
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN-----------------------Q 109 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~-----------------------~ 109 (259)
.++.+|+|.|++||||||+|..|+++++. ..+. . ++.+++.+.. +
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~---~~~~-~--------tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~ 69 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNI---KHLI-E--------TDFIREVVRGIIGKEYAPALHKSSYNAYTALRDK 69 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCC---eEEc-c--------ChHHHHHHcCCCCcccCchhhcccHHHHhhcCCc
Confidence 46789999999999999999999999853 2221 1 1222222211 1
Q ss_pred CCCCHHHHH-HHHHHhHHHH----H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeC
Q 024986 110 SHLDDHTIH-LLFSANRWEK----R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDI 183 (259)
Q Consensus 110 ~~~~~~~~~-ll~~a~r~~~----~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~ 183 (259)
..+.+.... +.......+. + ..+......|..||+|+... .+.++.........+-..++|..
T Consensus 70 ~~~~~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl-----------~P~~i~~~~~~~~~~v~~~vl~~ 138 (319)
T PRK12338 70 ENFKNNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHL-----------VPGLIDIEQFEENASIHFFILSA 138 (319)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccc-----------cHHHHhhhhhcccCceEEEEEEC
Confidence 011100000 0001111111 1 23344456788899997633 22333321111112334556668
Q ss_pred CHHHHHhhcCCC------CCCcc-hHHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 184 PPEKAAERGGYG------GERYE-HLEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 184 ~~e~~~~R~~~R------~d~~e-~~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
+.+...+|...| +.+|- ..+-.+.++++..+.+. ..+.+|+ +.+.++.+++|.+.|.+..
T Consensus 139 dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~VpvI~-N~did~Tv~~ile~I~e~s 206 (319)
T PRK12338 139 DEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVEQAREHNVPVIK-NDDIDCTVKKMLSYIREVC 206 (319)
T ss_pred CHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHHhHhhCCCceeC-CCcHHHHHHHHHHHHHhhe
Confidence 888888887653 22221 11112233333333332 4666675 4689999999999887643
No 119
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.85 E-value=8.1e-08 Score=82.49 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
++|+|.|++||||||+++.|+++|+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999885
No 120
>PRK08118 topology modulation protein; Reviewed
Probab=98.85 E-value=1.1e-08 Score=84.34 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--CCCHHHHHHHHHHhHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--HLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
+-|+|.|++||||||+++.|++.++ ++++.++.- +..++ ..+.. . ....++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l-------------~~~~~w~~~~~~-~----------~~~~~~ 54 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN---IPVHHLDAL-------------FWKPNWEGVPKE-E----------QITVQN 54 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCceecchh-------------hcccCCcCCCHH-H----------HHHHHH
Confidence 3589999999999999999999985 333332210 11111 11111 0 001122
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG 195 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R 195 (259)
..++.. ..|+|+.+.+.+.. .+..+|.+||||+|.+++..|+..|
T Consensus 55 ~~~~~~-~wVidG~~~~~~~~----------------~l~~~d~vi~Ld~p~~~~~~R~~~R 99 (167)
T PRK08118 55 ELVKED-EWIIDGNYGGTMDI----------------RLNAADTIIFLDIPRTICLYRAFKR 99 (167)
T ss_pred HHhcCC-CEEEeCCcchHHHH----------------HHHhCCEEEEEeCCHHHHHHHHHHH
Confidence 233333 46678764432211 1346999999999999998886543
No 121
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.85 E-value=3.9e-08 Score=78.89 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=22.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~ 81 (259)
|+|.|++||||||+++.|++.++.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999943
No 122
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.84 E-value=1.1e-07 Score=80.85 Aligned_cols=158 Identities=24% Similarity=0.359 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCe--EEEEecCCCCChHHHHHHHHHhCCCCCC-HHHHHHHHHHhHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHS--VELWRFPDRTTSVGQMISAYLSNQSHLD-DHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~--v~~~~~p~~~~~~g~~ir~~l~~~~~~~-~~~~~ll~~a~r~~~~~~i 132 (259)
++|+|+|.|.|||||.|+.|++.|..+|.+ +.+.+... +| +.++.... ...+- +-|-.....+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg------~~~ns~y~~s~~EK----~lRg~L~S~v 67 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LG------IEKNSNYGDSQAEK----ALRGKLRSAV 67 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cC------CCCcccccccHHHH----HHHHHHHHHH
Confidence 589999999999999999999999988744 33333211 11 11111111 11111 1122222445
Q ss_pred HHHHhcCCeEEEccccc-chhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC----cchHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSY-SGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER----YEHLEFQRK 207 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~-s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~----~e~~~~~~r 207 (259)
...+.++++||+|.--| .++-|+. |+. .+....-..+|+..+|+|.+.+-...|.+. |+. +.++.
T Consensus 68 ~R~Lsk~~iVI~DslNyIKGfRYeL-------yC~--ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~-e~le~ 137 (281)
T KOG3062|consen 68 DRSLSKGDIVIVDSLNYIKGFRYEL-------YCE--AKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDD-ELLEA 137 (281)
T ss_pred HhhcccCcEEEEecccccccceeee-------eee--hhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCH-HHHHH
Confidence 66788899999996433 2222221 111 122334568999999999999988766544 543 66677
Q ss_pred HHHHHHhhhC-----CCeE-EE--cCCCCHHHHHHHHH
Q 024986 208 VAQCYQMLRD-----SSWK-II--DACQSIEDVEKQLK 237 (259)
Q Consensus 208 v~~~y~~l~~-----~~~~-vI--Da~~s~eev~~~I~ 237 (259)
+...|++... .+.. ++ +.+.+++.+.+.+.
T Consensus 138 L~~RyEeP~s~NRWDsPLf~ll~~~~~~~~~~I~~al~ 175 (281)
T KOG3062|consen 138 LVQRYEEPNSRNRWDSPLFTLLPDVITLPIDDILKALF 175 (281)
T ss_pred HHHHhhCCCccccccCcceEEecccCCCcHHHHHHHHh
Confidence 7778887532 2222 22 34567777766654
No 123
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.84 E-value=1.9e-07 Score=87.06 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH--HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC--YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~--y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
..|.+||+++|+++..+|+..|... ...+...++..+ +........++||++.+++++.+++.+.+...
T Consensus 123 ~~D~iI~V~ap~e~ri~Rl~~rRg~-s~~~a~~ri~~Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 123 LFHLVVVVDADVEVRVRRLVEQRGM-AEADARARIAAQASDEQRRAVADVWLDNSGTPDELVEAVRALWADR 193 (395)
T ss_pred hCCEEEEEECCHHHHHHHHHhcCCC-CHHHHHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 4589999999999999999864221 111222333221 11111223478889999999999888776553
No 124
>PLN02772 guanylate kinase
Probab=98.83 E-value=3.7e-08 Score=90.80 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=92.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSA 123 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a 123 (259)
..++|+|.||+|+||+|+++.|.+.+.. .++.+.+ ++.|..+..-| +.+......+ .+-.+ -.+.-
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g-~FlE~---~e~~G 209 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG-KFLEF---ASVHG 209 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC-cccee---eeecC
Confidence 4579999999999999999999987753 3444433 34443211101 1111211111 11000 00111
Q ss_pred hHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH
Q 024986 124 NRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL 202 (259)
Q Consensus 124 ~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~ 202 (259)
+.|.. ...+...+++|.++|+|=-+ +-..++....+.+-.++++..+.+++.+|+..|+..- ..
T Consensus 210 n~YGTsk~~V~~vl~~Gk~vILdLD~--------------qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGtes-eE 274 (398)
T PLN02772 210 NLYGTSIEAVEVVTDSGKRCILDIDV--------------QGARSVRASSLEAIFIFICPPSMEELEKRLRARGTET-EE 274 (398)
T ss_pred ccccccHHHHHHHHHhCCcEEEeCCH--------------HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCC-HH
Confidence 22222 24566777889999887211 1122222223334344444556788999998775432 23
Q ss_pred HHHHHHHHHHHhhhC------CCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQMLRD------SSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 203 ~~~~rv~~~y~~l~~------~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
+..+|+..+..++.. ..++++|. ++|+.++++.++|.
T Consensus 275 ~I~kRL~~A~~Ei~~~~~~~~fD~vIvND--dLe~A~~~L~~iL~ 317 (398)
T PLN02772 275 QIQKRLRNAEAELEQGKSSGIFDHILYND--NLEECYKNLKKLLG 317 (398)
T ss_pred HHHHHHHHHHHHHhhccccCCCCEEEECC--CHHHHHHHHHHHHh
Confidence 566777665444432 24455543 79999999999875
No 125
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.83 E-value=7.4e-07 Score=76.95 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.++|+|.|++||||||+++.|+++|+-
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~ 30 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGF 30 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3589999999999999999999999953
No 126
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.83 E-value=2.1e-08 Score=95.12 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=101.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
...+.+|+|+|.|+|||...++.|.+.++.+|+.|..+..|.. -+. .. ++ ..|+.
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~----~E~-----~~-----~~-------lwRf~---- 350 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTD----EEK-----AQ-----HY-------LWRFW---- 350 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCH----HHH-----cC-----cH-------HHHHH----
Confidence 3568999999999999999999999999999999887766641 011 00 10 12221
Q ss_pred HHHHH-hcCCeEEEcccccchhhhhcCCCC--CHHHHHh------hh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCC-
Q 024986 132 MEAKL-KAGTTLIVDRYSYSGVAFSSAKGI--DIEWCKA------PE---IGLLAPDSVLYLDIPPEKAAERGGYGGER- 198 (259)
Q Consensus 132 i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl--~~~~~~~------~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~- 198 (259)
+.+ ..|.+.|+||++|..+......|. +.+|-.. ++ ...+..-+-|||+++.++..+|+..|.+.
T Consensus 351 --~~lP~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p 428 (493)
T TIGR03708 351 --RHIPRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTP 428 (493)
T ss_pred --HhCCCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCC
Confidence 222 569999999999976654443332 2233222 22 23345568999999999999999865321
Q ss_pred -----cch-----HHHHHHHHHHHHhhh------CCCeEEEcCCC---CHHHHHHHHHHHHH
Q 024986 199 -----YEH-----LEFQRKVAQCYQMLR------DSSWKIIDACQ---SIEDVEKQLKEIVL 241 (259)
Q Consensus 199 -----~e~-----~~~~~rv~~~y~~l~------~~~~~vIDa~~---s~eev~~~I~~~i~ 241 (259)
+.+ .+....-..+|.++- ..+|++|+++. .--.|.+.|.+.+.
T Consensus 429 ~k~WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~ 490 (493)
T TIGR03708 429 FKRYKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE 490 (493)
T ss_pred ccCCcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence 111 122222334444431 16899999863 23335555555444
No 127
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.78 E-value=2.4e-07 Score=86.41 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=109.6
Q ss_pred CCCcccccccCcc---cccCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC
Q 024986 33 CSCTPFRMESSSS---LRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ 109 (259)
Q Consensus 33 ~~~~~~~~~~~~~---~~~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~ 109 (259)
.|-|.||-.+... +...........|+|.|++||||||+++.|++.++. .. ..+..+ +.+.+-+...
T Consensus 194 iSaT~IR~~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~---~~--v~E~~R-----~~~~~~~~~~ 263 (399)
T PRK08099 194 ISGTQIRENPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNT---TS--AWEYGR-----EYVFSHLGGD 263 (399)
T ss_pred cCHHHHhhCHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCC---Ce--eeeccH-----HHHHHhhcCC
Confidence 3667777666522 222223345678999999999999999999998853 21 122221 2222211111
Q ss_pred C-C--CCHHHHHHHHHHhHHHHHHHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhccCCCCCEEEEEeCCH
Q 024986 110 S-H--LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEIGLLAPDSVLYLDIPP 185 (259)
Q Consensus 110 ~-~--~~~~~~~ll~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~~~~~PdlvI~Ld~~~ 185 (259)
+ . ..+... +. ..+..... ..+.....++|+|+-+.++.+|... .|....++..+... ...|++++++.++
T Consensus 264 ~~~l~~~D~~~-ia--~~~~~~~~--~~~~~a~~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~-~ryDlvlll~pd~ 337 (399)
T PRK08099 264 EMALQYSDYDK-IA--LGHAQYID--FAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDE-YRFDLTILLENNT 337 (399)
T ss_pred ccCCChhhhHH-HH--hhhHHHHH--HHHHhcCCeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHh-CCCCEEEEcCCCC
Confidence 1 1 111110 11 11111111 1122335699999999999998753 23333444443322 4467888887665
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 024986 186 EKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 186 e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~ 247 (259)
.-..+=+....+.-....|++.+.+.|.+. +.++++|+ +++.++=++++.++|++.+..+
T Consensus 338 Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~-g~~~v~l~-~g~~~eR~~~a~~~i~~~l~~~ 397 (399)
T PRK08099 338 PWVADGLRSLGSSVDRKRFQNLLKEMLKEN-NIEYVHVE-SPDYDKRYLRCVELVDQMLGEQ 397 (399)
T ss_pred CcccCCcccCCCHHHHHHHHHHHHHHHHHc-CCCEEEEC-CCCHHHHHHHHHHHHHHHhhcc
Confidence 544331111111101135666666666553 35688884 3579999999999999988765
No 128
>PRK06696 uridine kinase; Validated
Probab=98.78 E-value=1.2e-07 Score=81.48 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=32.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
.++.+|+|.|++||||||+++.|++.|+..|..++.+
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~ 56 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRA 56 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4678999999999999999999999998878777653
No 129
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.77 E-value=6.7e-07 Score=75.71 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
++++|+|.|++||||||++..|+++++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 578999999999999999999999873
No 130
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.76 E-value=1.2e-07 Score=79.00 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEE-EecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVEL-WRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSA 123 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~-~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a 123 (259)
++++|+|.||+||||+|+++.|.+.+... +..+.+ ++.|..+..- -+.+.++...+. +-.+. .|..
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~-fie~~---~~~g 76 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGE-FIEYG---EYDG 76 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTH-EEEEE---EETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhcccc-EEEEe---eecc
Confidence 47899999999999999999999988643 222322 3433321110 111112111110 00000 0000
Q ss_pred hHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCcch
Q 024986 124 NRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERYEH 201 (259)
Q Consensus 124 ~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~e~ 201 (259)
..|.. ...+...+++|.++|+|-.+ +-+..+......| ++||+.++ ++.+.+|+..|++.- .
T Consensus 77 ~~YGt~~~~i~~~~~~gk~~il~~~~--------------~g~~~L~~~~~~~-~~IfI~~~s~~~l~~~l~~r~~~~-~ 140 (183)
T PF00625_consen 77 NYYGTSKSAIDKVLEEGKHCILDVDP--------------EGVKQLKKAGFNP-IVIFIKPPSPEVLKRRLRRRGDES-E 140 (183)
T ss_dssp EEEEEEHHHHHHHHHTTTEEEEEETH--------------HHHHHHHHCTTTE-EEEEEEESSHHHHHHHHHTTTHCH-H
T ss_pred hhhhhccchhhHhhhcCCcEEEEccH--------------HHHHHHHhcccCc-eEEEEEccchHHHHHHHhcccccc-H
Confidence 00000 23455666778888886322 2233333334445 67777655 677888876654321 1
Q ss_pred HHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 202 LEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 202 ~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+..+++...-..+. +.+.++.| .++|+++++|.+.|.+
T Consensus 141 ~~i~~r~~~~~~~~~~~~~fd~vi~n--~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 141 EEIEERLERAEKEFEHYNEFDYVIVN--DDLEEAVKELKEIIEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHHGGGGGSSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhcCCEEEEC--cCHHHHHHHHHHHHHh
Confidence 234444433322222 23454444 3799999999998875
No 131
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.75 E-value=3.5e-07 Score=87.41 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.|+|.|++||||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg 25 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD 25 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999884
No 132
>PRK07667 uridine kinase; Provisional
Probab=98.74 E-value=2.9e-07 Score=77.46 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=34.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD 93 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~ 93 (259)
...+|.|.|++||||||+++.|++.+...|.++..+...+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 3479999999999999999999999988888876665443
No 133
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.74 E-value=2.5e-07 Score=76.87 Aligned_cols=152 Identities=22% Similarity=0.226 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC-----CCCChHHHHHHHHHhC-----CCCCCHHHH-HHHHHH-h
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP-----DRTTSVGQMISAYLSN-----QSHLDDHTI-HLLFSA-N 124 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p-----~~~~~~g~~ir~~l~~-----~~~~~~~~~-~ll~~a-~ 124 (259)
+|.|+|++||||||+++.|++ + |+.++..+.- ..+......+.+.+-. .+.++.... ..+|.. .
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 76 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPE 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHH
Confidence 489999999999999999988 4 6666543211 1123334444444321 123443221 122210 0
Q ss_pred H---HH---H---HHHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhc
Q 024986 125 R---WE---K---RSMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERG 192 (259)
Q Consensus 125 r---~~---~---~~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~ 192 (259)
. .+ + ...+...+. ...+||+|-.+ .+.. ......|.++++++|+++..+|+
T Consensus 77 ~~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~pl----L~e~-------------~~~~~~D~vv~V~a~~~~ri~Rl 139 (179)
T cd02022 77 KRKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPL----LFET-------------GLEKLVDRVIVVDAPPEIQIERL 139 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehH----hhcC-------------CcHHhCCeEEEEECCHHHHHHHH
Confidence 0 01 0 011221111 12466665321 1211 01134689999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHH
Q 024986 193 GYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIE 230 (259)
Q Consensus 193 ~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~e 230 (259)
..|+ .+...+...++..+... .....-++|+++.+++
T Consensus 140 ~~Rd-~~s~~~~~~r~~~Q~~~~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 140 MKRD-GLSEEEAEARIASQMPLEEKRARADFVIDNSGSLE 178 (179)
T ss_pred HHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCCC
Confidence 8763 23333455555443211 1111225676666543
No 134
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.72 E-value=5.9e-07 Score=73.15 Aligned_cols=63 Identities=27% Similarity=0.356 Sum_probs=41.1
Q ss_pred CCEEEEEeCCHHHHHhhcCCCCCC--cc-h------HHHHHHHHHHHHhhhCCCeEEEcCCCCH-HHHHHHHHHHH
Q 024986 175 PDSVLYLDIPPEKAAERGGYGGER--YE-H------LEFQRKVAQCYQMLRDSSWKIIDACQSI-EDVEKQLKEIV 240 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R~d~--~e-~------~~~~~rv~~~y~~l~~~~~~vIDa~~s~-eev~~~I~~~i 240 (259)
.-.+|||++|++++.+|+..+..| +. . .+.+.+....|...+ .++||++..+ ++++++|.+.|
T Consensus 85 ~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a---~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 85 NGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAA---DIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHS---SEEEETSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcC---eEEEeCCCCCHHHHHHHHHHHh
Confidence 458999999999999998654332 11 1 112223345666654 4788887666 99999999876
No 135
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.72 E-value=7.8e-07 Score=88.16 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=44.1
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCC----CCC--CcchHHHHHHHHH-HHHhh-------h-CCCeEEEcCC-CCHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGY----GGE--RYEHLEFQRKVAQ-CYQML-------R-DSSWKIIDAC-QSIEDVEKQ 235 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~----R~d--~~e~~~~~~rv~~-~y~~l-------~-~~~~~vIDa~-~s~eev~~~ 235 (259)
+|.-|+.|||++++++..+|... ++. .|+ +.++.+.+ -+.+. . ..+-++||++ .++|||++.
T Consensus 571 ~p~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~--~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~ 648 (661)
T PRK11860 571 FPDAALKVFLTASAEARAERRYKQLISKGISANIA--DLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQ 648 (661)
T ss_pred CCCCCeEEEEECChhHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHH
Confidence 46678999999999998777532 121 233 22222221 11111 1 1367899985 799999999
Q ss_pred HHHHHHH
Q 024986 236 LKEIVLD 242 (259)
Q Consensus 236 I~~~i~~ 242 (259)
|.+.|..
T Consensus 649 i~~~i~~ 655 (661)
T PRK11860 649 VLDWWQE 655 (661)
T ss_pred HHHHHHh
Confidence 9998864
No 136
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.72 E-value=1.4e-07 Score=75.58 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=62.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHH--HHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISA--YLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~--~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
..+-|.|+|.||+||||++..|++.++ +..+.+ ++.+++ ++.. ++......++..++ .++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~---~~~i~i---------sd~vkEn~l~~g---yDE~y~c~i~DEdk--v~D~ 68 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTG---LEYIEI---------SDLVKENNLYEG---YDEEYKCHILDEDK--VLDE 68 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhC---CceEeh---------hhHHhhhcchhc---ccccccCccccHHH--HHHH
Confidence 456789999999999999999998774 443322 222221 1111 11000000111111 1245
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG 196 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~ 196 (259)
+.+.+..|. .|+|-.-.+-+ + -...|++|.|.+|-+++.+|+..|+
T Consensus 69 Le~~m~~Gg-~IVDyHgCd~F--------p----------erwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 69 LEPLMIEGG-NIVDYHGCDFF--------P----------ERWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred HHHHHhcCC-cEEeecccCcc--------c----------hhheeEEEEEecCchHHHHHHHHcC
Confidence 567777764 44563322110 1 1246899999999999999999775
No 137
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.71 E-value=6.6e-07 Score=79.98 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=41.9
Q ss_pred CCCCEEEEEeCCHHHHHhhcCC-CCCC-c----chHHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 173 LAPDSVLYLDIPPEKAAERGGY-GGER-Y----EHLEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 173 ~~PdlvI~Ld~~~e~~~~R~~~-R~d~-~----e~~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
..+..+|||+++++++.+|+.. |..+ . ...+.+.+.++.+..+.+..-++||++ .+++++.++|.+.+..
T Consensus 84 g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 84 GIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred CCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 3455789999999999999863 2111 1 112222222222211222122778875 6999999999988744
No 138
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.71 E-value=1.4e-07 Score=94.30 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=49.9
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCCCCC--CcchHHHHHHHHH-HH---Hhh---h-CCCeEEEcCC-CCHHHHHHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGYGGE--RYEHLEFQRKVAQ-CY---QML---R-DSSWKIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~R~d--~~e~~~~~~rv~~-~y---~~l---~-~~~~~vIDa~-~s~eev~~~I~~~i 240 (259)
+|..|+-|||++++++..+|...+.. .++ +.++.+.. -+ +.. . ..+.++||++ .++|+|++.|.+.+
T Consensus 152 ~p~a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~--~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i 229 (712)
T PRK09518 152 APDAEVRILLTAREEVRQARRSGQDRSETPG--VVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLV 229 (712)
T ss_pred ecCCCeEEEEECCHHHHHHHHHHhhhcCCHH--HHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 46678999999999998887653321 232 11222111 11 111 1 1467899974 89999999999999
Q ss_pred HHHHhhhh
Q 024986 241 LDQVTACK 248 (259)
Q Consensus 241 ~~~l~~~~ 248 (259)
...+....
T Consensus 230 ~~~~~~~~ 237 (712)
T PRK09518 230 EDAIEEQE 237 (712)
T ss_pred Hhhhhhhh
Confidence 98888765
No 139
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=98.67 E-value=2.2e-07 Score=80.00 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=100.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
++.-.++.|++|+||+|++..|.+.+...++..- ..+ +...+++.|..+++++..+.-+++..... ....+..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~-~l~~~l~---- 88 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVR-LLEKRLE---- 88 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHH-HHHhhcc----
Confidence 6788999999999999999999998865332110 011 11124455555555555443232221111 0000100
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------CCc------
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------ERY------ 199 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------d~~------ 199 (259)
.+.++ ...|.|+++.+.. ..+.+......+|.+|.|++|.+.+.+|+..|. ..|
T Consensus 89 -~~~~~--~~~ildg~Prt~~-----------qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~p 154 (235)
T KOG3078|consen 89 -NPRCQ--KGFILDGFPRTVQ-----------QAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNP 154 (235)
T ss_pred -ccccc--cccccCCCCcchH-----------HHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccC
Confidence 01122 3477888886532 112234456789999999999999999987651 111
Q ss_pred -----------c--------hHHHHHHHHHHHHhhh---------CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 024986 200 -----------E--------HLEFQRKVAQCYQMLR---------DSSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248 (259)
Q Consensus 200 -----------e--------~~~~~~rv~~~y~~l~---------~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~ 248 (259)
| ..+..+.....|.+.. ...+..+++.. +++|+..|.+.+...+....
T Consensus 155 Pk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~ 230 (235)
T KOG3078|consen 155 PKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPERE 230 (235)
T ss_pred CccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhh
Confidence 1 1222333334454321 13566777777 99999999998887665543
No 140
>COG0645 Predicted kinase [General function prediction only]
Probab=98.66 E-value=9.5e-07 Score=72.21 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=74.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC--------CCCCCHHHHHHHHHHhHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN--------QSHLDDHTIHLLFSANRW 126 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~--------~~~~~~~~~~ll~~a~r~ 126 (259)
+.++.+.|.+|+||||++..|++.+.+. .++ .+.+++-+.. .+.+++......|..
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~-----~lr--------sD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~--- 64 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAI-----RLR--------SDVIRKRLFGVPEETRGPAGLYSPAATAAVYDE--- 64 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcCce-----EEe--------hHHHHHHhcCCcccccCCCCCCcHHHHHHHHHH---
Confidence 3688999999999999999999999752 222 1344554443 122333332222211
Q ss_pred HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC
Q 024986 127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE 197 (259)
Q Consensus 127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d 197 (259)
........+..|..||.|.-+.... ..+....+......|-..|.+++|++++.+|+..|..
T Consensus 65 -l~~~A~l~l~~G~~VVlDa~~~r~~--------~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 65 -LLGRAELLLSSGHSVVLDATFDRPQ--------ERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred -HHHHHHHHHhCCCcEEEecccCCHH--------HHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 1123345678899999996544221 1122333334455677889999999999999987743
No 141
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.66 E-value=2.3e-07 Score=77.40 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec-----CCCCChHHHHHHHHHh-----CCCCCCHHHHH-HHHHH-
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF-----PDRTTSVGQMISAYLS-----NQSHLDDHTIH-LLFSA- 123 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~-----p~~~~~~g~~ir~~l~-----~~~~~~~~~~~-ll~~a- 123 (259)
++|.|+|..||||||+++.|++ .|+.++..+. -..+.+..+.+.+.+- ..+.++..... ++|..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~----~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~ 76 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE----LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP 76 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH----TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred CEEEEECCCcCCHHHHHHHHHH----CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence 5899999999999999999977 4777764321 1113444455555432 22345543322 22211
Q ss_pred hHHHHH---------HHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh
Q 024986 124 NRWEKR---------SMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER 191 (259)
Q Consensus 124 ~r~~~~---------~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R 191 (259)
.....+ ..+...+. ....+|+|--. .|.. ......|.+|++.+|+++..+|
T Consensus 77 ~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pL----L~E~-------------~~~~~~D~vi~V~a~~e~ri~R 139 (180)
T PF01121_consen 77 EKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPL----LFES-------------GLEKLCDEVIVVYAPEEIRIKR 139 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TT----TTTT-------------TGGGGSSEEEEEE--HHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcch----hhhh-------------hHhhhhceEEEEECCHHHHHHH
Confidence 111111 11221111 22567766322 1211 0113468999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHH-----HhhhCCCeEEEcCCCCHHH
Q 024986 192 GGYGGERYEHLEFQRKVAQCY-----QMLRDSSWKIIDACQSIED 231 (259)
Q Consensus 192 ~~~R~d~~e~~~~~~rv~~~y-----~~l~~~~~~vIDa~~s~ee 231 (259)
+..|+ .+...+...++..+. ...++ .+||++++++|
T Consensus 140 l~~R~-~~~~~~~~~ri~~Q~~~~~k~~~ad---~vI~N~g~~~~ 180 (180)
T PF01121_consen 140 LMERD-GLSEEEAEARIASQMPDEEKRKRAD---FVIDNNGSLEE 180 (180)
T ss_dssp HHHHH-TSTHHHHHHHHHTS--HHHHHHH-S---EEEE-SSHHH-
T ss_pred HHhhC-CCcHHHHHHHHHhCCCHHHHHHhCC---EEEECCCCCCC
Confidence 98762 333334444443322 12233 68888888775
No 142
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.65 E-value=3.9e-07 Score=72.31 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+|+|.|++||||||+++.|++.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999984
No 143
>PHA03134 thymidine kinase; Provisional
Probab=98.61 E-value=3.8e-06 Score=75.93 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=93.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC-C-CChHH-HHHHHHHh-----CCCCCCHH-HHHHHH-H
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD-R-TTSVG-QMISAYLS-----NQSHLDDH-TIHLLF-S 122 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~-~-~~~~g-~~ir~~l~-----~~~~~~~~-~~~ll~-~ 122 (259)
.+=..|.|+|+.|.||||.++.|++.- ..+..++.+.||= + .+.++ +.|..++. +.++++.. +..+.. .
T Consensus 11 ~~~~rvYlDG~~GvGKTT~~~~l~~~~-~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~ 89 (340)
T PHA03134 11 VRIVRIYLDGAYGIGKSTTGRVMASAA-SGGGPTLYFPEPMAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHY 89 (340)
T ss_pred ccEEEEEEeCCCcCCHHHHHHHHHHhc-cCCCceEEecCcHHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHH
Confidence 445679999999999999998887632 2344577777772 0 01111 34544433 12334332 111111 1
Q ss_pred HhHHH----HH-HHHHHHHh------c---CCeEEEcccccchh-hhhcC---CC-CCHHHHHhhhccCCC--C-CEEEE
Q 024986 123 ANRWE----KR-SMMEAKLK------A---GTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPEIGLLA--P-DSVLY 180 (259)
Q Consensus 123 a~r~~----~~-~~i~~~l~------~---g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~~~~~~--P-dlvI~ 180 (259)
-.++. .. ..+.+.+. . ..++|+||++.+.. +|-.+ .| +...-+..+...++. | |.+|+
T Consensus 90 Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~pG~niVl 169 (340)
T PHA03134 90 QARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREPPGGNLVV 169 (340)
T ss_pred HHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCCCCCeEEE
Confidence 01110 01 22333332 1 26899999998654 33222 23 333444444444443 5 89999
Q ss_pred EeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 024986 181 LDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML 215 (259)
Q Consensus 181 Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l 215 (259)
++.++++..+|+..|+...| +.+|+..++..|..+
T Consensus 170 ~~l~~~e~~~Rl~~R~R~gE~id~~yL~~l~n~Y~~l 206 (340)
T PHA03134 170 TTLNPDEHLRRLRARARIGEQIDAKLIAALRNVYAML 206 (340)
T ss_pred EeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 99999999999987754334 468888888888654
No 144
>PHA03135 thymidine kinase; Provisional
Probab=98.60 E-value=1e-06 Score=79.67 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=86.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC--ChHHHHHHHHHhC-----CCCCCH-HHH------HH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT--TSVGQMISAYLSN-----QSHLDD-HTI------HL 119 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~--~~~g~~ir~~l~~-----~~~~~~-~~~------~l 119 (259)
+=..|.|+|+.|+||||+++.|++... .|..+..+.||-.- +.+.+.|..++.- .+.++. .+. +.
T Consensus 9 ~~~rIYlDG~~GvGKTT~~~~l~~~~~-~~~~vl~vpEPM~YWr~~f~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~~Q~ 87 (343)
T PHA03135 9 QLIRVYLDGPFGIGKTSMLNEMPDHSP-DGVPVLKVFEPMKYWRCYFTDLVVAVNDTPERRRRGELSLFQSSMIVAALQA 87 (343)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEecCcHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhccHHHHHHHH
Confidence 446799999999999999988887542 24446777777311 1123444444331 123321 111 11
Q ss_pred HHHHhHHHHH-HHHHHHHh--------cCCeEEEcccccchh-hhhcCC---C-CCHHHHHhhhccC----CCCCEEEEE
Q 024986 120 LFSANRWEKR-SMMEAKLK--------AGTTLIVDRYSYSGV-AFSSAK---G-IDIEWCKAPEIGL----LAPDSVLYL 181 (259)
Q Consensus 120 l~~a~r~~~~-~~i~~~l~--------~g~~VI~DR~~~s~~-ay~~~~---g-l~~~~~~~~~~~~----~~PdlvI~L 181 (259)
-|+. -+... +.+.+.+. ...+||+||++.+.. +|-.++ | +..+-+..+...+ +-.+++|+.
T Consensus 88 kfat-P~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls~~~l~sl~~~lp~~~pG~niVl~~ 166 (343)
T PHA03135 88 KFAD-PYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDCSLEMLISSIIRLPLEPPGCNLVITI 166 (343)
T ss_pred Hhcc-hHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCCCHHHHHHHHHhCCcCCCCCeEEEEE
Confidence 1111 00101 12222221 136899999998654 333332 2 2233232322222 223556665
Q ss_pred eCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 024986 182 DIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML 215 (259)
Q Consensus 182 d~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l 215 (259)
..++++..+|+.+|+...| +.+|+..++..|..+
T Consensus 167 L~~~~E~~rRl~~R~R~gE~~d~~yL~aL~n~Y~~l 202 (343)
T PHA03135 167 LPDEKEHVNRLSSRNRPGETTDRNMLRALNAVYSSL 202 (343)
T ss_pred CCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 5578999999987754333 467888888877554
No 145
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.60 E-value=3.1e-06 Score=70.98 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHHhCC-----CCCCHHHH-HHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYLSNQ-----SHLDDHTI-HLLFS 122 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l~~~-----~~~~~~~~-~ll~~ 122 (259)
.++.++|..||||||+++.+. +.|++++..+ +|+ ++.-..|.+.+-++ +.++.... ..+|.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~----~~G~~vIDaD~vaR~vv~PG--~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK----ALGIPVIDADVVAREVVEPG--TPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH----HcCCcEecHHHHHHHHhcCC--ChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 368999999999999998875 4578877422 343 44445555554322 22322111 11111
Q ss_pred --------------HhHHHHHHHHHHHHhcC-CeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHH
Q 024986 123 --------------ANRWEKRSMMEAKLKAG-TTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEK 187 (259)
Q Consensus 123 --------------a~r~~~~~~i~~~l~~g-~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~ 187 (259)
+-|++.+..+...+..| .++|+|- .+.|.. .+ ...-..+|..-+|.++
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi----PLLFE~------~~-------~~~~~~tvvV~cd~~~ 138 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI----PLLFEA------KL-------LKICHKTVVVTCDEEL 138 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec----hHHHHH------hH-------HhheeeEEEEEECcHH
Confidence 11111122333344455 4566652 222211 01 1122356667779999
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHHH--hhhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 188 AAERGGYGGERYEHLEFQRKVAQCYQ--MLRDSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 188 ~~~R~~~R~d~~e~~~~~~rv~~~y~--~l~~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
..+|+..|+ .....+...|+.++.- +..+-.-++||+++++++..++|..++...
T Consensus 139 Ql~Rl~~Rd-~lse~dAe~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 139 QLERLVERD-ELSEEDAENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALL 195 (225)
T ss_pred HHHHHHHhc-cccHHHHHHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHHHh
Confidence 999999885 2222344455544331 111234589999999999999999876543
No 146
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.59 E-value=6.6e-06 Score=73.68 Aligned_cols=172 Identities=17% Similarity=0.224 Sum_probs=87.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC-------------------CCCC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ-------------------SHLD 113 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~-------------------~~~~ 113 (259)
.++.+|+|.|++||||||+|..|+++|+ .+.+. . ...+-+.+|.++..+ ...+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~---~~~vi-~----~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~ 161 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLG---IRSVI-G----TDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPE 161 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCEEE-e----chHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCc
Confidence 4678999999999999999999999994 33221 1 111222222221100 0001
Q ss_pred H-HHHHHHHHHhHHHH-H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEe-CCHHHH
Q 024986 114 D-HTIHLLFSANRWEK-R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLD-IPPEKA 188 (259)
Q Consensus 114 ~-~~~~ll~~a~r~~~-~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld-~~~e~~ 188 (259)
+ ....++-....+.. . ..+..++.+|..+|+++... .++|+..... ..|. +.++|. -+.+..
T Consensus 162 ~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl-----------~P~~i~~~~~--~~~~~i~~~l~i~~ee~h 228 (301)
T PRK04220 162 PPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHI-----------VPGFIKEKYL--ENPNVFMFVLTLSDEEAH 228 (301)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCC-----------CHHHHHHhhh--cCCCEEEEEEEECCHHHH
Confidence 1 00000000000000 1 34566677888888886532 3456654332 2343 344555 455666
Q ss_pred HhhcCCC------C-CCc-chHHHHHHHHHHHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 189 AERGGYG------G-ERY-EHLEFQRKVAQCYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 189 ~~R~~~R------~-d~~-e~~~~~~rv~~~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
.+|...| . ++| ...+....++....+.+ ..++-+||+ .++++..+.+.+.|.+.+..
T Consensus 229 ~~RF~~R~~~~~r~~~~y~~~~~~ir~iq~~l~~~a~~~~ip~I~n-~~i~~s~~~~~~~i~~~~~~ 294 (301)
T PRK04220 229 KARFYARARVSRRPAERYLKNFEIIREINDYIVEKAKKHGVPVIEN-ISIEETVDKILEIITERLSK 294 (301)
T ss_pred HHHHHHHHhhhCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCeecC-ccHHHHHHHHHHHHHHHHHH
Confidence 7775433 1 112 11222223333333322 246667875 46778788877777776644
No 147
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.56 E-value=9.4e-08 Score=73.91 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l 79 (259)
|+|.|++||||||+++.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 148
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.3e-07 Score=80.19 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=75.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
....+|+|+|-|+|||.-.++.+.+.|+.+|+.|+-+..|. +...+ + .|+ .|+ +
T Consensus 72 ~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt-~~E~~-----------q--------wY~-qRy-----~ 125 (270)
T COG2326 72 GQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPT-DRERG-----------Q--------WYF-QRY-----V 125 (270)
T ss_pred CCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCC-hHhhc-----------c--------HHH-HHH-----H
Confidence 45689999999999999999999999999998887666554 11100 0 011 122 1
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCC--CHHH---HH------hhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGI--DIEW---CK------APEIGLLAPDSVLYLDIPPEKAAERGGYG 195 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl--~~~~---~~------~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R 195 (259)
...=..|.+||+||++|.........|. +.++ ++ ++......--+-+||+++.++..+|...|
T Consensus 126 ~~lPa~GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R 199 (270)
T COG2326 126 AHLPAAGEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLER 199 (270)
T ss_pred HhCCCCCeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHH
Confidence 2222569999999999854332222332 2222 22 22222233447899999999999998866
No 149
>PRK06761 hypothetical protein; Provisional
Probab=98.54 E-value=4.4e-06 Score=74.37 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=33.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD 93 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~ 93 (259)
+++|+|+|++||||||+++.|++.+...|+++..+..+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~ 41 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGN 41 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 579999999999999999999999988888887655443
No 150
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.54 E-value=4.3e-06 Score=71.02 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=27.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|.+|+|.|++||||||+++.|...+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999998864
No 151
>PRK07261 topology modulation protein; Provisional
Probab=98.50 E-value=2.6e-07 Score=76.34 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
+.|+|.|++||||||+++.|++.++ ++++..+.-... .+....+. .. ....+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~-----------~~~~~~~~-~~----------~~~~~~~~ 55 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQ-----------PNWQERDD-DD----------MIADISNF 55 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEec-----------cccccCCH-HH----------HHHHHHHH
Confidence 3589999999999999999998874 333322110000 00000110 00 01123344
Q ss_pred HhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCC
Q 024986 136 LKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY 194 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~ 194 (259)
+.++. +|+|+.+.. ..+. ..+...|.+|||++|.+++..|+..
T Consensus 56 ~~~~~-wIidg~~~~-~~~~--------------~~l~~ad~vI~Ld~p~~~~~~R~lk 98 (171)
T PRK07261 56 LLKHD-WIIDGNYSW-CLYE--------------ERMQEADQIIFLNFSRFNCLYRAFK 98 (171)
T ss_pred HhCCC-EEEcCcchh-hhHH--------------HHHHHCCEEEEEcCCHHHHHHHHHH
Confidence 55565 778887542 1111 0122458999999999999888743
No 152
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.47 E-value=7.5e-07 Score=62.49 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l 79 (259)
+|+|+|++||||||+++.|++.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999998
No 153
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.45 E-value=9e-06 Score=82.33 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=44.0
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCC-C--CCCcchHHHHHHHHH-HHHhh-------h-CCCeEEEcCC-CCHHHHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGY-G--GERYEHLEFQRKVAQ-CYQML-------R-DSSWKIIDAC-QSIEDVEKQLKE 238 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~-R--~d~~e~~~~~~rv~~-~y~~l-------~-~~~~~vIDa~-~s~eev~~~I~~ 238 (259)
+|.-++-|||++++++..+|-.. . ...|+ +.++.+.+ -+... . ..+.++||++ .++|+|++.|.+
T Consensus 204 fPdA~~KifL~As~e~RA~RR~~e~~~~~~~~--~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ieevv~~i~~ 281 (863)
T PRK12269 204 FVDADLKCYLDASIEARVARRWAQGTSRLSKQ--ELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTIEEVCERIAR 281 (863)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhhhccCCHH--HHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCHHHHHHHHHH
Confidence 56677999999999998776421 1 11222 22222321 22221 1 1467899975 899999999999
Q ss_pred HHHH
Q 024986 239 IVLD 242 (259)
Q Consensus 239 ~i~~ 242 (259)
.+..
T Consensus 282 ~~~~ 285 (863)
T PRK12269 282 EAHR 285 (863)
T ss_pred HHHh
Confidence 8875
No 154
>COG3911 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=1.4e-05 Score=64.17 Aligned_cols=170 Identities=15% Similarity=0.067 Sum_probs=83.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
++-++.+++|.+|+||||+.+.|++ .|+.++ .++.+ +.|..--..++..-|+....+|+.--..+...-
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~----~Gfatv--ee~~r-----~ii~~es~~gg~~lPW~D~~afael~~~~~l~q 75 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALAR----AGFATV--EEAGR-----DIIALESAQGGTALPWTDPGAFAELVGLQRLRQ 75 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHH----cCceee--ccchh-----hHHHHHHhcCCCcCCccChHHHHHHHHHHHHHH
Confidence 3447899999999999999988866 466443 33321 233322223322223333333322111111000
Q ss_pred HHHHhcCCeEEEcccccchhhhhc-CCCCC-HHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc-hHHHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSS-AKGID-IEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE-HLEFQRKVA 209 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~-~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e-~~~~~~rv~ 209 (259)
......+..|++||.+.+.++|.. .-|.. .+.+..+..... .+--|||--|.-.+.+--..|...++ ...+.+.+.
T Consensus 76 ~r~~~~~~~vFfDR~~~da~a~l~~lsga~la~~v~~~~~~~~-Yn~rVfl~qp~~~iyqqde~Rk~tldeAv~~~e~lv 154 (183)
T COG3911 76 TRSAAVGGRVFFDRGPPDALAYLRFLSGALLADEVATIVREGR-YNPRVFLVQPWPFIYQQDEERKITLDEAVAFYEVLV 154 (183)
T ss_pred hhcccccCceeeccCcHHHHHHHHHhcccHHHHHHHHHHHhcC-CCCcEEecCCccccccchhhcccCHHHHHHHHHHHH
Confidence 111245678999999999988865 22332 122333322221 12233443333333322222222222 356677778
Q ss_pred HHHHhhhCCCeEEEcCCCCHHHHHHHH
Q 024986 210 QCYQMLRDSSWKIIDACQSIEDVEKQL 236 (259)
Q Consensus 210 ~~y~~l~~~~~~vIDa~~s~eev~~~I 236 (259)
+.|.++. ..++.| .-.++++=+.-|
T Consensus 155 ~aYt~LG-yelv~l-p~a~Ve~Rv~fV 179 (183)
T COG3911 155 AAYTELG-YELVPL-PPAPVEDRVRFV 179 (183)
T ss_pred HHHHhcC-ceeeec-CCccHHHHHHHH
Confidence 8898874 233333 234555544444
No 155
>PTZ00301 uridine kinase; Provisional
Probab=98.42 E-value=5e-06 Score=71.05 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+..+|.|.|++||||||+|+.|.+.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999998854
No 156
>PRK06547 hypothetical protein; Provisional
Probab=98.42 E-value=6.8e-07 Score=74.04 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+.++|.|.|++||||||+++.|++.++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999999874
No 157
>COG4639 Predicted kinase [General function prediction only]
Probab=98.37 E-value=6.9e-06 Score=66.34 Aligned_cols=128 Identities=19% Similarity=0.145 Sum_probs=70.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC--CCCCCHHHHHHHHHHhHHHHH-HH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN--QSHLDDHTIHLLFSANRWEKR-SM 131 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~--~~~~~~~~~~ll~~a~r~~~~-~~ 131 (259)
..++++.|++||||||.++...... .++ + -+.++..+.. ....+.....+. ++.+ ..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~-----~~l--s--------ld~~r~~lg~~~~~e~sqk~~~~~-----~~~l~~~ 61 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQN-----YVL--S--------LDDLRLLLGVSASKENSQKNDELV-----WDILYKQ 61 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCc-----cee--c--------HHHHHHHhhhchhhhhccccHHHH-----HHHHHHH
Confidence 3589999999999999997643211 111 1 1223332210 000000000001 1111 23
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
.+..+++|+..|.|-.--.. -+..-+..+.+.+..-+.+|++|+|++.|.+|...| +++-+.+...++.+.
T Consensus 62 l~qrl~~Gk~tiidAtn~rr--------~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~-~Rqv~~~VI~r~~r~ 132 (168)
T COG4639 62 LEQRLRRGKFTIIDATNLRR--------EDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR-ERQVPEEVIPRMLRE 132 (168)
T ss_pred HHHHHHcCCeEEEEcccCCH--------HHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc-chhCCHHHHHHHHHH
Confidence 35567889999998543210 012334455556666778899999999999998743 555445555555444
No 158
>PHA03138 thymidine kinase; Provisional
Probab=98.36 E-value=9.7e-06 Score=73.40 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=30.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD 93 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~ 93 (259)
-..|.|+|+.|+||||.++.+.+.+...+-.+..+.||-
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~~~~~~~vl~vpEPm 50 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPL 50 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhhhcCCCceEEeeCch
Confidence 356999999999999999988887765444466777773
No 159
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=5.1e-07 Score=81.60 Aligned_cols=117 Identities=24% Similarity=0.211 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH--
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS-- 130 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~-- 130 (259)
.+|--|+++|.+|+||||+.-.|.+.|...|+++..++ |+.||.-+...-.+++. +|.+..+
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ld--------gdnirhgl~knlgfs~e--------dreenirri 111 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLD--------GDNIRHGLNKNLGFSPE--------DREENIRRI 111 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccC--------cchhhhhhhhccCCCch--------hHHHHHHHH
Confidence 46788999999999999999999999999998776443 56777776644233331 2333321
Q ss_pred -HHHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC
Q 024986 131 -MMEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG 193 (259)
Q Consensus 131 -~i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~ 193 (259)
.+.... ..|-+.|. ++.|.+ +. |..-.+.+......|.+-+|+++|.++|.+|-.
T Consensus 112 aevaklfadaglvcit--sfispf--~~----dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~ 168 (627)
T KOG4238|consen 112 AEVAKLFADAGLVCIT--SFISPF--AK----DRENARKIHESAGLPFFEVFVDAPLNVCEQRDV 168 (627)
T ss_pred HHHHHHHhcCCceeee--hhcChh--hh----hhhhhhhhhcccCCceEEEEecCchhhhhhcCh
Confidence 222222 34533332 333332 21 223344555666789999999999999999854
No 160
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=98.33 E-value=4.2e-05 Score=62.16 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=91.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC---CC---CCCHHHHHHHHHHhHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN---QS---HLDDHTIHLLFSANRWEK 128 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~---~~---~~~~~~~~ll~~a~r~~~ 128 (259)
-+.++|.|+-.|||||++++|+..++.. ...+--|+++.. ++ .++++....+ .+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~--------------~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~------Gq 67 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT--------------SAWEYGREYVFEHLGGDEALQYSDYAKIAL------GQ 67 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC--------------chhHHHHHHHHHHhCCchhhhhccHHHHHh------hh
Confidence 3789999999999999999999999741 001222333221 11 1222221111 11
Q ss_pred HHHHHHHH-hcCCeEEEcccccchhhhhc-CCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc---h-H
Q 024986 129 RSMMEAKL-KAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE---H-L 202 (259)
Q Consensus 129 ~~~i~~~l-~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e---~-~ 202 (259)
..-...+. ....++|+|--+.++.+|.. ..|-..+|+...-.. ...|++++|.-+ +-. ...+....+ + -
T Consensus 68 ~~~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~--t~w--vaDG~R~~~~~~~R~ 142 (187)
T COG3172 68 AAYEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPN--TPW--VADGLRSLGSSVQRQ 142 (187)
T ss_pred HHHHHHHHhCCCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCC--Cce--eCCCccccccHhHHH
Confidence 11111111 23579999988888888865 123222355433322 346888888443 321 111111111 1 3
Q ss_pred HHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 024986 203 EFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 203 ~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~ 247 (259)
+|++.+.++..+. ..++++|++. +-++=+.+..++|.+++.++
T Consensus 143 ~F~~~l~~~L~~~-~~~~v~i~~~-~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 143 EFQNLLEQMLEEN-NIPFVVIEGE-DYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHHHHHHHh-CCcEEEEcCC-CHHHHHHHHHHHHHHHHhcc
Confidence 5666665544433 4588899864 67777788888888877653
No 161
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.32 E-value=3.1e-05 Score=73.07 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.++.+|+|.|++|+||||++..|+++++.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~ 281 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI 281 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999999999853
No 162
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.28 E-value=8.5e-06 Score=68.48 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+|.|.|++||||||+++.|...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999883
No 163
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.22 E-value=1.2e-05 Score=77.37 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=66.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
.++.+|++.|++||||||+++.+.+.. |+.++ +. +.+.. + .. ....+
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~---g~~~v--n~--------D~lg~----------~-~~---------~~~~a 413 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPA---GYKHV--NA--------DTLGS----------T-QN---------CLTAC 413 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHc---CCeEE--Cc--------HHHHH----------H-HH---------HHHHH
Confidence 467899999999999999999998864 44322 21 11100 0 00 01234
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG 195 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R 195 (259)
+.++++|..||+|.-..+.-. ...+..+......|-..||+++|.+++.+|+..|
T Consensus 414 ~~~L~~G~sVVIDaTn~~~~~--------R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 414 ERALDQGKRCAIDNTNPDAAS--------RAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred HHHHhCCCcEEEECCCCCHHH--------HHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 567889999999864332111 1222333344556778999999999999999776
No 164
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.21 E-value=2.7e-05 Score=65.38 Aligned_cols=169 Identities=15% Similarity=0.222 Sum_probs=85.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe---cCCCCCh-------------------HHHHHHHHHhCCC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR---FPDRTTS-------------------VGQMISAYLSNQS 110 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~---~p~~~~~-------------------~g~~ir~~l~~~~ 110 (259)
.|..+|.|.|...|||||+|+.|...|.. .+++.-+ .|..+.+ +++.|...+.+..
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~--~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~ 79 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPG--CSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRH 79 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccC--CeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcc
Confidence 35678999999999999999999999974 3444311 1110000 0111111111111
Q ss_pred CCCHHHHHHHHHHhHHHHH-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHH
Q 024986 111 HLDDHTIHLLFSANRWEKR-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAA 189 (259)
Q Consensus 111 ~~~~~~~~ll~~a~r~~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~ 189 (259)
..+.....++-.++ +++. ......-.+..+||+|++.. |... + ....-|..|++.+|.+++.
T Consensus 80 ~~~~ar~~~v~~~~-~~~~~~~~q~~~~~~~iviidGfmi----y~y~-----p-------~~~~~d~~im~~~~y~~~k 142 (225)
T KOG3308|consen 80 NAPEAREHLVSYAN-FEHYAQQFQIKAYKNHIVIIDGFMI----YNYK-----P-------QVDLFDRIIMLTLDYETCK 142 (225)
T ss_pred ccchHhhhhhhhhH-HHHHhhhcCcccccCcEEEEecceE----Eecc-----h-------hhhhhhhheeeeccHHHHH
Confidence 11111111111111 1110 00011111235788888754 3321 1 1125688999999999999
Q ss_pred hhcCCCCC-------Ccch---HHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 190 ERGGYGGE-------RYEH---LEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 190 ~R~~~R~d-------~~e~---~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
+|-..|.. -++. ..|.+.. +.+.........-+|++.+-+..-..|.+.+.
T Consensus 143 rRr~~Rt~y~p~~tgyfd~~~~P~Y~~~~-~~~~d~~~h~~~flngdvs~e~~~~~v~~~i~ 203 (225)
T KOG3308|consen 143 RRREARTYYPPDDTGYFDPVVWPHYEKNF-EEARDRSRHDSLFLNGDVSEEKLDDKVNESIN 203 (225)
T ss_pred HhhcccccCCCCCCccccCccchHHHHHH-HHHHhhcccceeeecccchhhhchhhhhhhhc
Confidence 99877621 1122 1222221 12222222245677877777777777766663
No 165
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.21 E-value=9.7e-06 Score=69.95 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS 85 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~ 85 (259)
.++.+|.|.|++||||||+++.|+..+...+-.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 467899999999999999999999999875443
No 166
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.18 E-value=3.3e-05 Score=66.01 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
.++.+|.|.|++||||||+++.|.+.|+..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999999754
No 167
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.16 E-value=3.1e-06 Score=65.09 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
+|+|.|++||||||+|+.|++++ |+.++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~ 30 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVISM 30 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEEe
Confidence 58999999999999999999999 4555543
No 168
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.16 E-value=4.7e-06 Score=69.95 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+|.|.|++||||||+|+.|++.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999984
No 169
>PRK05439 pantothenate kinase; Provisional
Probab=98.12 E-value=1.6e-05 Score=71.77 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~ 90 (259)
..++.+|.|.|++||||||+|+.|++.+... +..+..+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 4567899999999999999999999988653 44554443
No 170
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.11 E-value=3.7e-05 Score=67.79 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+|+|.|.+||||||+++.|.+.|...|..+..+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899999999999999999999988777655443
No 171
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.10 E-value=8.9e-05 Score=65.75 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=40.2
Q ss_pred CCCCEEEEEeCCHHHHHhhcCC--CCCCcc----hHHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHH
Q 024986 173 LAPDSVLYLDIPPEKAAERGGY--GGERYE----HLEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVL 241 (259)
Q Consensus 173 ~~PdlvI~Ld~~~e~~~~R~~~--R~d~~e----~~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~ 241 (259)
...--++||+++.+++.+|-.. |..... ..+-.++-++....+.+..-++|||+ .++.+..+.|.+.+.
T Consensus 80 ~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 80 GIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDTSNLSVHQLRERIRERFG 155 (284)
T ss_pred CCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhc
Confidence 3345799999999999999863 221111 11222222222333333233899985 788877777776543
No 172
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.10 E-value=0.00016 Score=65.82 Aligned_cols=152 Identities=13% Similarity=0.157 Sum_probs=77.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHH-HHHHHHHhHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT-IHLLFSANRWEKRSMME 133 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~-~~ll~~a~r~~~~~~i~ 133 (259)
+..|+|.|++|+||||+++.|+..++. .+ +.++. -+.+++.......+...- ..+.. .+.....
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~---~~--v~E~~-----R~~~~~~~~~~~~l~~~d~~~i~~-----g~~~~~~ 226 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT---TS--AWEYA-----REYVEEKLGGDEALQYSDYAQIAL-----GQQRYID 226 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC---CE--Eeehh-----HHHHHHhcCCCcccCHHHHHHHHH-----HHHHHHH
Confidence 678999999999999999999998853 33 22222 122333221121221110 01110 0110111
Q ss_pred HHH-hcCCeEEEcccccchhhhhcC-CCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc--hHHHHHHHH
Q 024986 134 AKL-KAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE--HLEFQRKVA 209 (259)
Q Consensus 134 ~~l-~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~ 209 (259)
.++ ....+|++|+...++.+|... .|-...++...... ...|++++++.+.+ ..-=..|....+ ...+++.+.
T Consensus 227 ~~~~~a~~iif~D~~~~~t~~y~~~~~~~~~~~~~~~~~~-~~ydl~~l~~p~~~--~~~D~~R~~~~~~~R~~~~~ll~ 303 (325)
T TIGR01526 227 YAVRHAHKIAFIDTDFITTQVFAKQYEGREHPFLDSDIAE-YPFDLTLLLKPNTE--WVDDGLRSLGSQKQRQEFQQLLK 303 (325)
T ss_pred HHHhhcCCeEEEcCChHHHHHHHHHHcCCCCHHHHHHHHh-cCCCEEEECCCCCC--CccCCcccCchHHHHHHHHHHHH
Confidence 222 235699999999999988652 22222333322222 45677777766544 322222322221 124555555
Q ss_pred HHHHhhhCCCeEEEcC
Q 024986 210 QCYQMLRDSSWKIIDA 225 (259)
Q Consensus 210 ~~y~~l~~~~~~vIDa 225 (259)
+.|.+. ...+++|..
T Consensus 304 ~~l~~~-G~~~v~Vtg 318 (325)
T TIGR01526 304 KLLDEY-GVPFVVIES 318 (325)
T ss_pred HHHHHc-CCcEEEEeC
Confidence 556543 246677754
No 173
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.09 E-value=2.3e-06 Score=68.15 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+|+|.||+||||||+++.|.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 5899999999999999999998753
No 174
>PHA03133 thymidine kinase; Provisional
Probab=98.06 E-value=0.00025 Score=64.64 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=89.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC-C-CChH-HHHHHHHHhC-----CCCCCHHHH-------H
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD-R-TTSV-GQMISAYLSN-----QSHLDDHTI-------H 118 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~-~-~~~~-g~~ir~~l~~-----~~~~~~~~~-------~ 118 (259)
.-..|.|+|+.|.||||.++.+.+.+... -.++.+.||= + ...+ .+.|..++.. .++++.... +
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~~~-~~vl~~pEPM~YWr~~f~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~s~Q 117 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAALGRR-DDIEYVPEPMAYWQVLGGSETIARIFDAQHRLDRGEISAGEAAVAMTSAQ 117 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHhhCCC-CCeEEecCcHHHHHHHhhhhHHHHHHHHHHHHhccCcchhhhhhHHHHHH
Confidence 34679999999999999999998887543 2367777762 0 0111 2445554431 233332211 1
Q ss_pred HHHHHhHHHHH-HHHHHHHh---------c---CCeEEEcccccchh-hhhcC---CC-CCHHHHHhhhccCC---CCCE
Q 024986 119 LLFSANRWEKR-SMMEAKLK---------A---GTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPEIGLL---APDS 177 (259)
Q Consensus 119 ll~~a~r~~~~-~~i~~~l~---------~---g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~~~~~---~Pdl 177 (259)
+.|+.= +... ..+.+.+. . ..++|+||.+.+.. +|-.+ .| +..+-+..+...++ .-+-
T Consensus 118 ~kFatP-y~~~~~~~~~~~g~~~~~~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~ls~~~lislla~lp~~~pG~N 196 (368)
T PHA03133 118 VTMSTP-YAVTEAAVAPHIGGELPPGHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSLSLPAVLSFAALLPPTTPGTN 196 (368)
T ss_pred HHhcCh-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCCCHHHHHHHHHhCCCCCCCCE
Confidence 111110 0001 12222221 1 36899999998653 34322 12 33333333333343 2368
Q ss_pred EEEEeCCHHHHHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 024986 178 VLYLDIPPEKAAERGGYGGERYE--HLEFQRKVAQCYQML 215 (259)
Q Consensus 178 vI~Ld~~~e~~~~R~~~R~d~~e--~~~~~~rv~~~y~~l 215 (259)
+|+++.|+++-.+|+..|....| +..++..++..|.-+
T Consensus 197 iVl~~L~~~E~~~RL~~R~R~gE~~D~~~l~alrnvY~~l 236 (368)
T PHA03133 197 LVLGALPEAAHAERLAQRQRPGERLDLAMLSAIRRVYDML 236 (368)
T ss_pred EEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999988754444 245666666666443
No 175
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.99 E-value=4.5e-05 Score=64.32 Aligned_cols=127 Identities=15% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
.++.+|++-|++||||||++..+.+.+...++ +.++.... ..+....+.. ..+.......... +.++ ...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~--v~i~~D~~r~~~p~~~~~~~--~~~~~~~~~~~~~---a~~~-~~~ 84 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGI--VVIDADEFRQFHPDYDELLK--ADPDEASELTQKE---ASRL-AEK 84 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-S--EEE-GGGGGGGSTTHHHHHH--HHCCCTHHHHHHH---HHHH-HHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCe--EEEehHHHHHhccchhhhhh--hhhhhhHHHHHHH---HHHH-HHH
Confidence 57899999999999999999999998852233 22221100 0011111111 1111121111110 1111 112
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG 195 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R 195 (259)
.+..++.++..+|+|.-..+.-.+ .+.++.+.. ....-.++++.+|+++.+.|+..|
T Consensus 85 ~~~~a~~~~~nii~E~tl~~~~~~-------~~~~~~~k~-~GY~v~l~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 85 LIEYAIENRYNIIFEGTLSNPSKL-------RKLIREAKA-AGYKVELYYVAVPPELSIERVRQR 141 (199)
T ss_dssp HHHHHHHCT--EEEE--TTSSHHH-------HHHHHHHHC-TT-EEEEEEE---HHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCCChhHH-------HHHHHHHHc-CCceEEEEEEECCHHHHHHHHHHH
Confidence 345667788889998654321111 112333332 233456888999999999887543
No 176
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.90 E-value=5.5e-05 Score=67.70 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..++.+|.|.|++||||||+++.|...+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999888863
No 177
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00072 Score=58.92 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+.++.+|.|-|++|.||||+|..|+.+|+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcC
Confidence 456789999999999999999999999995
No 178
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.78 E-value=0.002 Score=55.50 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=62.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC---CCC---HHHHHHHHHHhHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS---HLD---DHTIHLLFSANRWE 127 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~---~~~---~~~~~ll~~a~r~~ 127 (259)
...+|++.|+|+.|||++++.|..+|.+.|+.+..++ .|+.-|+...... -++ ..+..+--... ..
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn-------~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a-~~ 82 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFN-------VGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA-KE 82 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-------HHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH-HH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceee-------cccceecccccccccccCCCCChHHHHHHHHHH-HH
Confidence 3467889999999999999999999999999888765 3555555543311 111 22111110000 01
Q ss_pred HHHHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeC---CHHHHHhhc
Q 024986 128 KRSMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDI---PPEKAAERG 192 (259)
Q Consensus 128 ~~~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~---~~e~~~~R~ 192 (259)
.++.+...+. .|++-|+|.--- +.... .++........ .-++|+.. |++++.+.+
T Consensus 83 ~l~dl~~~l~~~~G~VAI~DATN~-T~~RR-------~~l~~~~~~~~--~~vlFIEsic~D~~ii~~NI 142 (222)
T PF01591_consen 83 ALEDLIEWLQEEGGQVAIFDATNS-TRERR-------KMLVERFKEHG--IKVLFIESICDDPEIIERNI 142 (222)
T ss_dssp HHHHHHHHHHTS--SEEEEES----SHHHH-------HHHHHHHHHTT---EEEEEEEE---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCC-CHHHH-------HHHHHHHHHcC--CcEEEEEEEeCCHHHHHHHH
Confidence 1233444454 578999996432 22221 34433222222 46777776 777776554
No 179
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.76 E-value=2.6e-05 Score=65.47 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHS 85 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~ 85 (259)
+|.|.|++||||||+|+.|+..|+..|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 68999999999999999999999987776
No 180
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=97.76 E-value=0.00065 Score=60.14 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=76.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCeEEEEecC------CCCChHHHHHHHHH--hCCCCCCHH-HH------HHHHHHhHH
Q 024986 62 GLDRCGKTSQCSRLLSYLEGLGHSVELWRFP------DRTTSVGQMISAYL--SNQSHLDDH-TI------HLLFSANRW 126 (259)
Q Consensus 62 G~dGSGKSTla~~L~~~l~~~g~~v~~~~~p------~~~~~~g~~ir~~l--~~~~~~~~~-~~------~ll~~a~r~ 126 (259)
|+.|.||||.++.|++.... |-.+..+.|| .+++..-+.|.+.- ...++.+.. +. +..|+. -+
T Consensus 1 G~~GvGKTT~~~~l~~~~~~-~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fat-P~ 78 (281)
T PF00693_consen 1 GAMGVGKTTTLKALAEALPA-GDPVLYFPEPMAYWRTVFGTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFAT-PY 78 (281)
T ss_dssp SSTTSSHHHHHHHHHHCCTS-SCCEEEE---HHHHHTCSSSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH-HH
T ss_pred CCCCcCHHHHHHHHHHccCC-CCCeEEecccHHHHHHHhhHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcc-hH
Confidence 89999999999999997753 3456767776 12222222222211 122345421 11 111211 01
Q ss_pred HHH-HHHHHHH----------hcCCeEEEcccccchh-hhhcC---CC-CCHHHHHhhhccCC---CCCEEEEEeCCHHH
Q 024986 127 EKR-SMMEAKL----------KAGTTLIVDRYSYSGV-AFSSA---KG-IDIEWCKAPEIGLL---APDSVLYLDIPPEK 187 (259)
Q Consensus 127 ~~~-~~i~~~l----------~~g~~VI~DR~~~s~~-ay~~~---~g-l~~~~~~~~~~~~~---~PdlvI~Ld~~~e~ 187 (259)
... ..+.+.+ .-..++|+||++.+.. +|-.+ .| +..+-+..+...++ ..+.+|.++.|+++
T Consensus 79 ~~~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E 158 (281)
T PF00693_consen 79 LALHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEE 158 (281)
T ss_dssp HHHHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHH
T ss_pred HHHHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHH
Confidence 111 1111111 0135899999998654 34222 12 33333334444443 23578899999999
Q ss_pred HHhhcCCCCCCcc--hHHHHHHHHHHHHhh
Q 024986 188 AAERGGYGGERYE--HLEFQRKVAQCYQML 215 (259)
Q Consensus 188 ~~~R~~~R~d~~e--~~~~~~rv~~~y~~l 215 (259)
..+|+..|+...| +..|+..++..|.-+
T Consensus 159 ~~rRl~~R~R~gE~vd~~~l~~Lr~~Y~~l 188 (281)
T PF00693_consen 159 HLRRLKARGRPGERVDLNYLRALRNVYHAL 188 (281)
T ss_dssp HHHHHHHTSTTT-S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 9999987754444 467888888888654
No 181
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.74 E-value=0.00085 Score=54.58 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=95.2
Q ss_pred cccccccCcccccCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE----EEecCCC--CChHHHHHHH-HHhC
Q 024986 36 TPFRMESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE----LWRFPDR--TTSVGQMISA-YLSN 108 (259)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~----~~~~p~~--~~~~g~~ir~-~l~~ 108 (259)
+..||--.+...++ +.+|++|.+-|.+.||||+++..+.+-...-...+- ...-|.. ....|-.... ...+
T Consensus 6 r~rr~~~~~~~~ag--~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~d 83 (205)
T COG3896 6 RARRMRYRLAAMAG--MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEAD 83 (205)
T ss_pred HHHHHHHHHHHHcC--CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccC
Confidence 33455554442233 579999999999999999999999886653211110 0001100 0000000000 0000
Q ss_pred CCCCCH-HHHHHH--HHHhHHHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCC
Q 024986 109 QSHLDD-HTIHLL--FSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIP 184 (259)
Q Consensus 109 ~~~~~~-~~~~ll--~~a~r~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~ 184 (259)
+..+.+ ..-.++ .+..+. ..+.....+|..||.|-+... .+|+-. +.....-|...|-+.+|
T Consensus 84 g~~~v~v~~gpi~e~~~~~~r---~ai~a~ad~G~~~i~Ddv~~~-----------r~~L~Dc~r~l~g~~v~~VGV~~p 149 (205)
T COG3896 84 GLEWVTVHPGPILELAMHSRR---RAIRAYADNGMNVIADDVIWT-----------REWLVDCLRVLEGCRVWMVGVHVP 149 (205)
T ss_pred CceeeEeechhHHHHHHHHHH---HHHHHHhccCcceeehhcccc-----------hhhHHHHHHHHhCCceEEEEeecc
Confidence 000100 000111 111111 234444567989999976653 123211 11223457789999999
Q ss_pred HHHHHhhcCCCCCCcchHHHHHHHHHHHHhh-hCCC-eEEEcCC-CCHHHHHHHHHHHH
Q 024986 185 PEKAAERGGYGGERYEHLEFQRKVAQCYQML-RDSS-WKIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 185 ~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~l-~~~~-~~vIDa~-~s~eev~~~I~~~i 240 (259)
.|+..+|-..|+++... +. .-.|+.. ++.. -..+||+ .+|.|.+..|.+..
T Consensus 150 ~E~~~~Re~rr~dR~pG--~~---rg~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~ 203 (205)
T COG3896 150 DEEGARRELRRGDRHPG--WN---RGSARAVHADAEYDLEVDTSATTPHECAREIHERY 203 (205)
T ss_pred HHHHHHHHhhcCCcCcc--hh---hhhHHHhcCCcceeeeecccCCCHHHHHHHHHHHh
Confidence 99999887767776432 11 1133332 1222 2678987 58999999988764
No 182
>PLN02348 phosphoribulokinase
Probab=97.74 E-value=0.0002 Score=66.44 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=27.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
.++.+|.|.|++||||||+++.|++.|+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 567899999999999999999999999753
No 183
>PRK15453 phosphoribulokinase; Provisional
Probab=97.73 E-value=5.4e-05 Score=67.27 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=31.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
.++++|+|.|.+||||||+++.|++.|...+..+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi 39 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV 39 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence 5789999999999999999999999998766655443
No 184
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.72 E-value=5.1e-05 Score=61.76 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=30.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE 87 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~ 87 (259)
..+-|.|+|+||+||||++..+++.|...|+.+-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 3567999999999999999999999999988874
No 185
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.66 E-value=6.5e-05 Score=62.50 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
+|.|.|++||||||+++.|++.+...|..+..+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i 33 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVI 33 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 589999999999999999999998777766544
No 186
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.59 E-value=0.00034 Score=66.09 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=34.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.++.+|.|.|+.|+||||.+..|+.+|...|+++.++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 467899999999999999999999999988888876543
No 187
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.58 E-value=0.00014 Score=60.24 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
.+.++|.|.|++||||||+++.|...|...|+.+-.+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 3567999999999999999999999998888876443
No 188
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.54 E-value=0.00022 Score=62.81 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=29.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS 85 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~ 85 (259)
...+.+|.+.|++|+||||+++.|+..+...+-+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 3567889999999999999999999999876544
No 189
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.53 E-value=0.00031 Score=59.38 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
|.+|+|.||.|+||||.+.+|+.++...|.++-.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 578999999999999999999999987788876554
No 190
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.00079 Score=57.78 Aligned_cols=174 Identities=18% Similarity=0.246 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFSAN 124 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~a~ 124 (259)
.+-|++.||.|+||+|+..+|.+++.. .++.|.. ++.|..+..-| +....+..+. ...+...+..+
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~----~fiE~a~~~gn 112 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNN----EFIEFATFSGN 112 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhh----hhhhhhhhhcc
Confidence 367999999999999999999999986 4555543 23332110000 0000000000 00111111111
Q ss_pred HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeC-CHHHHHhhcCCCCCCcch
Q 024986 125 RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDI-PPEKAAERGGYGGERYEH 201 (259)
Q Consensus 125 r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~-~~e~~~~R~~~R~d~~e~ 201 (259)
.+.. ...++.....|...|.| +-+++... .....+| +.+|+.. +-..+.+|+..|+-..+
T Consensus 113 ~yGtsi~av~~~~~~gk~~ild------Id~qg~~~----------i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~- 175 (231)
T KOG0707|consen 113 KYGTSIAAVQRLMLSGKVCILD------IDLQGVQP----------IRATSLDAIYIFIKPPSIKILEERLRARGTETE- 175 (231)
T ss_pred cCCchHHHHHHHHhcCCcceee------hhhcCcee----------eecCCCceEEEEecCCcchhHHHHhhccCcchH-
Confidence 1111 12334444556666665 22222110 0111344 4555553 44456788887754332
Q ss_pred HHHHHHHHHHHHhhh---C-C-CeEEEcCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024986 202 LEFQRKVAQCYQMLR---D-S-SWKIIDACQSIEDVEKQLKEIVLDQVTACKK 249 (259)
Q Consensus 202 ~~~~~rv~~~y~~l~---~-~-~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~ 249 (259)
.+.++++..+..+.. + . --.+|.++..+|++.+++...+.......+.
T Consensus 176 ~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns~~lee~~kel~~~~~~~~~~~~~ 228 (231)
T KOG0707|consen 176 ESLLKRLKSAEEEFEILENSGSFDLVIVNSDRLEEAYKELEIFISSDDKESHQ 228 (231)
T ss_pred HHHHHHHHhhhhhhccccCCccccceecCCCchhhhhhhhhhhhhHHHHhhhh
Confidence 356677766666542 2 1 1234444488999999999888766655543
No 191
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.52 E-value=0.00016 Score=59.12 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+++.|.|+.+|||||+++.|.+.|.++|+.|-.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 478999999999999999999999999999886544
No 192
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00022 Score=63.45 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=41.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-cC---C-CCChHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-FP---D-RTTSVGQMISAY 105 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-~p---~-~~~~~g~~ir~~ 105 (259)
..+..+|.|+|+||+||||++..|..+|...|+.|-.+. .| . .++-+|+.+|.-
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~ 106 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ 106 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH
Confidence 456789999999999999999999999999999874432 22 2 234568887653
No 193
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0012 Score=60.65 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=33.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|.|.|.-|+||||.|..|+-+|..+|+++-++.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 35689999999999999999999999999999986543
No 194
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.47 E-value=0.0004 Score=59.88 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=28.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
-+|.|||||||||-|....+-|.+.|.++..++
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVN 37 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVN 37 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEe
Confidence 367899999999999999999999898776554
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00015 Score=55.43 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL 88 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~ 88 (259)
+..+.|.|++|+||||++..|+..+...+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~ 35 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY 35 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEE
Confidence 5679999999999999999999999775433443
No 196
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.44 E-value=0.00045 Score=56.61 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
+|+|.|++|+||||++..++..+...|..+..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~ 36 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 68899999999999999999999888888766553
No 197
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.43 E-value=0.00018 Score=63.06 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-c---CCC-CChHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-F---PDR-TTSVGQMISA 104 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-~---p~~-~~~~g~~ir~ 104 (259)
.+..+|.|+|+||+||||+++.|...|...|.+|-.+. . |.. +.-+|+.+|.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM 83 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRM 83 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGC
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHh
Confidence 46789999999999999999999999998888874332 2 222 3345777764
No 198
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.43 E-value=0.00025 Score=56.73 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
++|.|.|+.+|||||+++.|..+|..+|+.+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 4789999999999999999999999999987643
No 199
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.43 E-value=0.00074 Score=60.25 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-C-CeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-G-HSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g-~~v~~~~ 90 (259)
.++.+|+|.||.|+||||.+..|+.++... | .+|..+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 367899999999999999999999998754 4 7776554
No 200
>PRK14974 cell division protein FtsY; Provisional
Probab=97.38 E-value=0.00048 Score=62.97 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=33.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|+|.|++|+||||++..|+..|...|+++....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 35789999999999999999999999988888876543
No 201
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.38 E-value=0.00028 Score=57.40 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+|+|.|+.||||||++..|.+.+..+|+++-.+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4789999999999999999999998899886554
No 202
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.35 E-value=0.00027 Score=60.82 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh--CCCeEEEE
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEG--LGHSVELW 89 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~--~g~~v~~~ 89 (259)
+|.|.|++||||||+++.|...+.. .+..+..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi 35 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELI 35 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 5889999999999999999999964 33444443
No 203
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.33 E-value=0.00036 Score=53.80 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
|.|.||+|+||||+++.+++.++ .++..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccc
Confidence 67999999999999999999984 5555544
No 204
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.32 E-value=0.00042 Score=63.21 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=33.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|.|.|++||||||+++.|...+...|.++..+.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46789999999999999999999999998888876543
No 205
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.0063 Score=56.90 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=34.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..++.+|.+.|.=||||||.|..|+.+|..+|+++-.+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVa 135 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVA 135 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEe
Confidence 346789999999999999999999999999999887654
No 206
>PRK13768 GTPase; Provisional
Probab=97.30 E-value=0.00039 Score=61.05 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=31.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++|+|.|++|+||||++..++..+...|.++..+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 468999999999999999999999988898877653
No 207
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.30 E-value=0.00046 Score=56.41 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++|.|.|++||||||+++.|...|...|+.+-.+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK 36 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 47999999999999999999999998888765443
No 208
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.28 E-value=0.0071 Score=52.97 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=39.0
Q ss_pred EEEEEeCCHHHHHhhcCC-C-CCCcc--h--HHHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 177 SVLYLDIPPEKAAERGGY-G-GERYE--H--LEFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 177 lvI~Ld~~~e~~~~R~~~-R-~d~~e--~--~~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
-++||+++.+++.+|-.. | ..... . .+-..+-++....+.+..-++|||+ .++.+.-+.|.+.+..
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence 589999999999999863 2 11111 1 1111111121212222223789975 8999888888877654
No 209
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.26 E-value=0.001 Score=59.08 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|+|.|++|+||||.+..|+..+...|.+|..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45789999999999999999999999988888886654
No 210
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.25 E-value=0.00033 Score=57.74 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSV 86 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v 86 (259)
|.|+|.+|+||||++..+.+.+...|+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 78999999999999999999997766654
No 211
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.25 E-value=0.00089 Score=60.78 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.+|+|.||+|+||||++..|+..+...|.+|....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46889999999999999999999999988888887654
No 212
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.25 E-value=0.00054 Score=49.54 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+|++.|..|+||||++..|+..|...|+++..++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999988888876543
No 213
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.24 E-value=0.00034 Score=60.93 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.6
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 60 LEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 60 ieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
|.||.||||||.+..+.+++...|.++..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEE
Confidence 5799999999999999999999888887665
No 214
>PF13245 AAA_19: Part of AAA domain
Probab=97.23 E-value=0.00066 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=19.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
.+.+.+|.|++||||||++..+..++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46788899999999995554444444
No 215
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0018 Score=58.55 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=35.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..++.+|.|.|..|+||||-+..|+.+|...|++|....
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA 174 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA 174 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence 356899999999999999999999999999999998643
No 216
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.22 E-value=0.00057 Score=63.25 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.+|+|.|++||||||+++.|.+.|... ++|..+.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik 39 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYK 39 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEE
Confidence 579999999999999999999999999987 7776544
No 217
>PRK07429 phosphoribulokinase; Provisional
Probab=97.17 E-value=0.00057 Score=62.25 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=29.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL 88 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~ 88 (259)
..+..+|.|.|++||||||+++.|++.++..+..++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~ 41 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVIC 41 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEE
Confidence 3467899999999999999999999998755433443
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.14 E-value=0.00086 Score=51.75 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=30.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+..+.|.|++|+||||+++.+...+...+..+..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 4678999999999999999999999865555565544
No 219
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.14 E-value=0.0051 Score=61.28 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
....+|++.|.+|+||||+++.|+++|...|+.+..+.
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~ 250 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFI 250 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEc
Confidence 34578999999999999999999999998888766554
No 220
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.13 E-value=0.00053 Score=53.06 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=27.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC-----CCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-----GHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-----g~~v~~~~~p 92 (259)
++.+++|.|++|+||||+++.+.+.+... ...+..+..|
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP 46 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence 56789999999999999999999998653 4555555544
No 221
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.12 E-value=0.00087 Score=60.27 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..++.+|.|.|++||||||++..|...+...|+.+..+.
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 357899999999999999999999999988888876543
No 222
>PRK04296 thymidine kinase; Provisional
Probab=97.11 E-value=0.00083 Score=56.35 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=32.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
.|.++++.|++|+||||.+-.++.++...|..+..+
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 378999999999999999999999998788887765
No 223
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.09 E-value=0.0014 Score=61.69 Aligned_cols=38 Identities=26% Similarity=0.499 Sum_probs=33.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|.|.|+.||||||.+..|+..+...|.+|..+.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 35689999999999999999999999988898876654
No 224
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.09 E-value=0.00054 Score=54.36 Aligned_cols=30 Identities=33% Similarity=0.280 Sum_probs=27.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
...|.+|++.|..||||||+++.+++.++.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 457889999999999999999999999864
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.08 E-value=0.00053 Score=62.96 Aligned_cols=28 Identities=32% Similarity=0.251 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.+++.|.||+|+||||+++.|+..++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4688999999999999999999999975
No 226
>PLN02796 D-glycerate 3-kinase
Probab=97.08 E-value=0.00079 Score=61.52 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=29.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE 87 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~ 87 (259)
.++.+|.|.|+.||||||+++.|...+...|..+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g 132 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAA 132 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCcee
Confidence 46788999999999999999999999976665543
No 227
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.03 E-value=0.0019 Score=50.75 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=25.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
|.+.|++|+|||++++.|++.+ +.++..+.-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~ 32 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINC 32 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEe
Confidence 6789999999999999999999 455554443
No 228
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.03 E-value=0.00082 Score=62.95 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY 105 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~ 105 (259)
=|.|.|+||+||||.|+.|++.|..+|.=|..+..|. +-.+++.|-+|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPR-Dl~v~~eITQY 312 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPR-DLQVSPEITQY 312 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcc-cccCChhhhhc
Confidence 3667799999999999999999999998555666564 22334444444
No 229
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.03 E-value=0.0011 Score=57.43 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++|.|.|++||||||++..|.++|...|++|-.+.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47899999999999999999999999999886554
No 230
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00058 Score=61.51 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.++|.+.||||+||||+|+.|+++|.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 57999999999999999999999995
No 231
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.97 E-value=0.0013 Score=58.55 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
++|.|.|..||||||++..|...|..+| .|-.+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 4799999999999999999999999988 66443
No 232
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.96 E-value=0.0013 Score=61.52 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
.++.+|.|.|+.||||||+++.|...+...|+.+..+
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI 246 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL 246 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 4678999999999999999999988887666655444
No 233
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.95 E-value=0.0018 Score=54.65 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=31.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
...+++|.|++|+||||++..+.+.+...|+.++.+.
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4578999999999999999999999999898887665
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=96.95 E-value=0.0023 Score=60.50 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=33.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~ 90 (259)
.++.+|.|.|+.||||||.+..|+.+|... |.+|..+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 357899999999999999999999999877 88876554
No 235
>PF05729 NACHT: NACHT domain
Probab=96.95 E-value=0.00095 Score=53.38 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLG 83 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g 83 (259)
++++|.|.+|+||||++..++..+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 4789999999999999999999997654
No 236
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.94 E-value=0.00076 Score=58.15 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=24.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.||+||||||+.+.|.--..
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 46899999999999999999999965443
No 237
>PLN02840 tRNA dimethylallyltransferase
Probab=96.93 E-value=0.00073 Score=63.32 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=27.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..++++|+|.||+||||||++..|+++++.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 456789999999999999999999999964
No 238
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.93 E-value=0.0016 Score=60.29 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.++|.|.|.+||||||+++.|.+.|..+|+.|-.+.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4569999999999999999999999999999876544
No 239
>PLN02165 adenylate isopentenyltransferase
Probab=96.91 E-value=0.0008 Score=61.23 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|.+|+|.||+||||||++..|++.++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 46789999999999999999999999863
No 240
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0023 Score=60.06 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHH-hhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYL-EGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l-~~~g~~v~~~~ 90 (259)
++.+|+|.|++||||||++..|+..+ ...|..|....
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 56789999999999999999999876 45677776544
No 241
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.91 E-value=0.0016 Score=52.48 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+|.+.|+.||||||++..|...+...|.++..+.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~ 34 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLA 34 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3789999999999999999999988888876543
No 242
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.91 E-value=0.0017 Score=54.86 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecC
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFP 92 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p 92 (259)
+|+|.||+||||||++..|...+... +..+.....|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 68999999999999999998888643 3334444333
No 243
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.90 E-value=0.0015 Score=61.32 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++|.|.|..||||||+++.|..+|..+|++|-.+.
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 48999999999999999999999999999986543
No 244
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.0039 Score=58.82 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh--hCCCeEEEEec
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE--GLGHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~--~~g~~v~~~~~ 91 (259)
+|.+|+|.||.|+||||.+..|+.++. ..|.+|..+..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 467999999999999999999999886 45777776553
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.88 E-value=0.0018 Score=51.34 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
+++|.|++|+||||++..+...+...|.++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 37899999999999999999988777777776554
No 246
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.88 E-value=0.00094 Score=59.34 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL 88 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~ 88 (259)
+|.|.|++||||||+++.|...+...+..++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 58899999999999999999998765544443
No 247
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.0083 Score=56.65 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=32.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL 88 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~ 88 (259)
.+|.+|+|.|..|.||||-...++=+|-..+++|.+
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLI 411 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLI 411 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEE
Confidence 478999999999999999999999999888888765
No 248
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0055 Score=57.14 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh----CCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG----LGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~----~g~~v~~~~ 90 (259)
.++.+|+|.|+.|+||||.+..|+.++.. .|.+|....
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 35679999999999999999999998863 466765543
No 249
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.85 E-value=0.0015 Score=63.02 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD 93 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~ 93 (259)
+..++++.||+||||||.++.|++.+ |+.+..+..|.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~ 80 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPV 80 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCC
Confidence 45699999999999999999999998 56777665553
No 250
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.85 E-value=0.0023 Score=54.47 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++||||||++-.++......|.++.++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 57899999999999999999999998877788877664
No 251
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.85 E-value=0.0024 Score=53.91 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
-.+|.++.|.|++||||||++..++......|..+.++..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3578999999999999999999998887667877776653
No 252
>PHA00729 NTP-binding motif containing protein
Probab=96.83 E-value=0.0011 Score=57.28 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..|+|.|++|+||||+|..|++++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999875
No 253
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.83 E-value=0.00098 Score=60.22 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
++++|+|.||.||||||++..|++.++.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 5679999999999999999999999864
No 254
>PRK06851 hypothetical protein; Provisional
Probab=96.83 E-value=0.0022 Score=59.20 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL 88 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~ 88 (259)
-.++++|.|++|+||||+++.|.+.+...|+.|..
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~ 63 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEF 63 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34789999999999999999999999888888753
No 255
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.82 E-value=0.001 Score=54.93 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+++|.|.|++||||||+|..|+..++
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcC
Confidence 35799999999999999999998874
No 256
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0045 Score=57.46 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|+|.||.|+||||++..|+..+...|.+|..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999998877788776544
No 257
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.79 E-value=0.0027 Score=54.05 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+..|.|.|++|+||||++..+..++...+.++..+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 45678999999999999999999998876666666554
No 258
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.78 E-value=0.0021 Score=44.06 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
.|.+..|.|+.||||||+.+.+.--|
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997766
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0041 Score=58.03 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=32.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++..|+|.|+.|+||||.+..|+..+...|.++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4678999999999999999999999988888776544
No 260
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.78 E-value=0.002 Score=56.68 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLG 83 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g 83 (259)
.+.-++|.||+|+||||+|+.+++.+...|
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 445688999999999999999999886543
No 261
>PRK13695 putative NTPase; Provisional
Probab=96.78 E-value=0.0026 Score=52.31 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV 86 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v 86 (259)
+.|+|.|++|+||||++..+...+...|+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 4689999999999999999998887667654
No 262
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.77 E-value=0.0023 Score=56.38 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD 93 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~ 93 (259)
.+..|+|.|++||||||+...|.+.+......++.+..|.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 4688999999999999999999998887646666666543
No 263
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.75 E-value=0.0014 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLL 76 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~ 76 (259)
..|.+++|.|++||||||++..+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 468899999999999999999986
No 264
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.75 E-value=0.002 Score=52.61 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
...+..++|.|++|+||||+.+.+.+.+...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3567999999999999999999999999765
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=96.75 E-value=0.0026 Score=56.11 Aligned_cols=38 Identities=26% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|..++|.||+|+|||+++..|...+...|+.+..+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45677889999999999999999888777788876554
No 266
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0013 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRL 75 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L 75 (259)
-.+|-+++|.||+||||||+.+-|
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999999877
No 267
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.75 E-value=0.0033 Score=52.78 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=28.0
Q ss_pred CCc-cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 024986 53 SRG-ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV 86 (259)
Q Consensus 53 ~~g-~lIvieG~dGSGKSTla~~L~~~l~~~g~~v 86 (259)
+++ ..|-|.||+||||||+...+.+.|..+ |++
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~ 43 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKI 43 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCe
Confidence 355 689999999999999999999999775 543
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.75 E-value=0.0014 Score=54.16 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-.|+|+||+||||||+.+.++.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4689999999999999999999997754
No 269
>CHL00181 cbbX CbbX; Provisional
Probab=96.74 E-value=0.0018 Score=57.89 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
.+|.-|+|.|++|+||||+|+.+++.+...|+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 35677999999999999999999999876554
No 270
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0074 Score=54.45 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=26.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+-++|+|.|+.|||||-++-.|+.++++
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~ 33 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPG 33 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCc
Confidence 6789999999999999999999999875
No 271
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.0086 Score=57.80 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~ 90 (259)
.+|.+|+|.|+.|+||||++..|+..+... |.++.++.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 468999999999999999999999887543 34555443
No 272
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.67 E-value=0.0054 Score=57.91 Aligned_cols=38 Identities=32% Similarity=0.568 Sum_probs=32.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~ 90 (259)
.++.+|.+.|++||||||.+..|+.++. ..|.++..+.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3567999999999999999999999986 4688876554
No 273
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.66 E-value=0.0019 Score=50.52 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+.|.+|.+.|.-||||||+++.+++.++.
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357899999999999999999999999854
No 274
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.66 E-value=0.0029 Score=55.96 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
..-+|+|.|++||||||+...+...+...+..++.+..|
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp 117 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP 117 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCC
Confidence 345899999999999999999988886545556655544
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.66 E-value=0.022 Score=50.53 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
..++..|++.|.-||||||.+++|..++.+.+-
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 457889999999999999999999999987643
No 276
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.62 E-value=0.0042 Score=48.03 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=29.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
|++.|..|+||||++..|+..+...|.++..+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999999988888887654
No 277
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.61 E-value=0.0043 Score=51.02 Aligned_cols=34 Identities=21% Similarity=0.066 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++|.|++|+|||+++..+....-..|.++.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3789999999999999998777666687777654
No 278
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.61 E-value=0.0027 Score=54.68 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
=+.|.||||.||||+|..++..++. ++..+.-|
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~---~~~~~sg~ 84 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGV---NFKITSGP 84 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-----EEEEECC
T ss_pred eEEEECCCccchhHHHHHHHhccCC---CeEeccch
Confidence 4889999999999999999999864 44444444
No 279
>PF13173 AAA_14: AAA domain
Probab=96.60 E-value=0.0025 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+++++|.|+-|+||||++..+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999998885
No 280
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.59 E-value=0.0046 Score=52.88 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.++.|.|++|+||||++..++...-..|..+.++..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 578999999999999999999999887666788876653
No 281
>PLN02748 tRNA dimethylallyltransferase
Probab=96.58 E-value=0.0019 Score=61.42 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+..++++|+|.||.||||||++..|++.++
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999999999986
No 282
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.58 E-value=0.0046 Score=55.34 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
..+.+|.|.|++||||||+++.|...+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 457899999999999999999999998654
No 283
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.58 E-value=0.0019 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~ 81 (259)
|.|.|++|+|||++++.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999998864
No 284
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0021 Score=55.95 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=26.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|-+++|.||+||||||+.+.++--...
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 468999999999999999999999876643
No 285
>PRK06851 hypothetical protein; Provisional
Probab=96.57 E-value=0.0045 Score=57.20 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.++++|.|++|+||||++..+++.+..+|+.+....-
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4689999999999999999999999999999876543
No 286
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.57 E-value=0.0047 Score=51.32 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.++.-++|.|++|+|||.+|..++.++-..|+++..+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 356679999999999999999999988888999887653
No 287
>PRK12377 putative replication protein; Provisional
Probab=96.56 E-value=0.0037 Score=54.75 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.-++|.|++|+|||+++..++..+...|++|..+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 56899999999999999999999988899887654
No 288
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.56 E-value=0.0022 Score=50.16 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|-+++|.|+.||||||+.+.|...+..
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EcCCCEEEEEccCCCccccceeeecccccc
Confidence 357899999999999999999999876653
No 289
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.54 E-value=0.005 Score=53.39 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
+..++|.||+|+|||+++..++..+...|.++.++..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 4578999999999999999999988877887776543
No 290
>PRK13764 ATPase; Provisional
Probab=96.54 E-value=0.0038 Score=61.19 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=31.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
+...|.|.|++||||||+++.|.+.+...+..+..+..|
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp 294 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESP 294 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 346699999999999999999999998777666454433
No 291
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.51 E-value=0.0032 Score=52.46 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|..|+|.|+.||||||+.+.|...+..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 46889999999999999999999887764
No 292
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.50 E-value=0.0024 Score=54.22 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 293
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.50 E-value=0.0025 Score=53.06 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45889999999999999999999987554
No 294
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.49 E-value=0.0026 Score=52.13 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
.+++.++|.|++|+||||+++.|....
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456999999999999999999997753
No 295
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.49 E-value=0.0093 Score=51.33 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~ 90 (259)
..+|.+++|.|++|+||||++..++-.+-.. |.++.++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3588999999999999999999998877555 88877654
No 296
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.48 E-value=0.0025 Score=54.10 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 45899999999999999999999987664
No 297
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.48 E-value=0.0026 Score=53.76 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987664
No 298
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.48 E-value=0.0026 Score=53.85 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45889999999999999999999988664
No 299
>PRK10536 hypothetical protein; Provisional
Probab=96.47 E-value=0.033 Score=49.03 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH-HhhCCCeEEEEecC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSY-LEGLGHSVELWRFP 92 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~-l~~~g~~v~~~~~p 92 (259)
..++++.|+.|+|||+++..++.. +....+..+++..|
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP 112 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRP 112 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCC
Confidence 469999999999999999999884 43334554444444
No 300
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.47 E-value=0.0026 Score=53.85 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45889999999999999999999987654
No 301
>PRK08116 hypothetical protein; Validated
Probab=96.46 E-value=0.02 Score=50.73 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=31.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.-+.|.|++|+|||.++..++.++...|+++..+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 456899999999999999999999987788887665
No 302
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.46 E-value=0.0087 Score=51.76 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=29.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|.++.|.|++|+||||++..+...+-..|..+.++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 357889999999999999998666555544576666554
No 303
>PRK05973 replicative DNA helicase; Provisional
Probab=96.45 E-value=0.0071 Score=52.66 Aligned_cols=39 Identities=23% Similarity=0.136 Sum_probs=32.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|.+++|.|.+|+||||++-.++...-..|.++.++.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999999998876655688876654
No 304
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.44 E-value=0.0047 Score=57.01 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
++-+|+|.|+.||||||+...|...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999999999885
No 305
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.44 E-value=0.0061 Score=52.17 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=30.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+..++|.|++|+|||+++..++..+...|..+..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4567899999999999999999998876677766554
No 306
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.015 Score=58.48 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh-hCC-CeEEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE-GLG-HSVELW 89 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~-~~g-~~v~~~ 89 (259)
+|.+|.|.||.|+||||.+.+|+..+. ..| .+|...
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~li 221 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALL 221 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEe
Confidence 578999999999999999999998883 445 355443
No 307
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0029 Score=53.50 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45889999999999999999999987653
No 308
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.43 E-value=0.0037 Score=55.84 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
++.-|+|.|++|+||||+|..+++.+...|+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4556999999999999999999999976654
No 309
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.43 E-value=0.0029 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLL 76 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~ 76 (259)
..+|-+++|.|+.||||||+.+.+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999999884
No 310
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.0098 Score=55.13 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=29.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CC-CeEEE
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LG-HSVEL 88 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g-~~v~~ 88 (259)
..+|.+|+|.||+|+||||++.+|+.++.. .| ..+..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~l 172 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVAL 172 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 356889999999999999999999998743 35 34443
No 311
>PRK06893 DNA replication initiation factor; Validated
Probab=96.42 E-value=0.0057 Score=52.79 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=30.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+.+.|.|++|+|||+++..++..+...|..+.++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 3467899999999999999999999877777776544
No 312
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.0027 Score=57.91 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..|-+++|.||+||||||+.+.++--..
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999976554
No 313
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.42 E-value=0.0087 Score=50.60 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+..|+|.|+.||||||+++.+...+..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 357999999999999999999998764
No 314
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.41 E-value=0.003 Score=54.02 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|.+++|.|+.||||||+++.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4589999999999999999999999877
No 315
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.41 E-value=0.0056 Score=48.01 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
...|+.+++|-|++|+|||-+++.|++.+=..|.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGM 82 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence 4578899999999999999999999999755444
No 316
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.40 E-value=0.003 Score=53.73 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 317
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.003 Score=54.39 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 318
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.39 E-value=0.013 Score=53.71 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--hhCCCeEEEEecCCCCChHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYL--EGLGHSVELWRFPDRTTSVGQMISAYLS 107 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l--~~~g~~v~~~~~p~~~~~~g~~ir~~l~ 107 (259)
.+|+|.|.+|||||.++-.|+..+ ...+..+..+.. +.++...+++.+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~---n~~l~~~l~~~l~ 52 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCG---NHPLRNKLREQLA 52 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEe---cchHHHHHHHHHh
Confidence 479999999999999999999999 444555544332 2334444554443
No 319
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0031 Score=53.37 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 320
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.39 E-value=0.0031 Score=53.06 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45889999999999999999999987664
No 321
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.38 E-value=0.0062 Score=50.40 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
++++|.|.-||||||+.+.|.+ ....|.++..+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 5789999999999999999998 54556665433
No 322
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0023 Score=62.96 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=29.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
.-.+|++|+|.||||.|||++++.+++.|+...+
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 3468999999999999999999999999986543
No 323
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.38 E-value=0.0041 Score=54.36 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
+.+++|.|++|+||||+++.+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~ 70 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE 70 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 4588999999999999999999988643
No 324
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.37 E-value=0.009 Score=51.09 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=29.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~ 91 (259)
.+|.++.|+|++|+|||+++..+....-.. |.++.++..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 578999999999999999999876544344 777776653
No 325
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0032 Score=54.29 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45899999999999999999999987664
No 326
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.37 E-value=0.0032 Score=54.41 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46899999999999999999999987664
No 327
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.37 E-value=0.0032 Score=53.52 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46889999999999999999999987664
No 328
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.37 E-value=0.0067 Score=59.67 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=32.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.++|.|.|.+||||||++++|..+|..+|++|-.+.
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIK 45 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIK 45 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEE
Confidence 3469999999999999999999999999999875544
No 329
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.36 E-value=0.0032 Score=53.02 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45789999999999999999999987653
No 330
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.36 E-value=0.0063 Score=53.56 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++|+||||++..++...-..|.++.++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 47899999999999999999998776545577776543
No 331
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0031 Score=53.73 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35889999999999999999999987654
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.36 E-value=0.0033 Score=52.30 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35789999999999999999999987664
No 333
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.35 E-value=0.0032 Score=53.59 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 334
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0036 Score=51.70 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|...+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 335
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.35 E-value=0.0032 Score=53.72 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 336
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.35 E-value=0.0035 Score=53.06 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999999988664
No 337
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.35 E-value=0.0031 Score=54.26 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45899999999999999999999987654
No 338
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0031 Score=53.34 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+| +++|.|+.||||||+++.|.-.+.
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 468 999999999999999999987654
No 339
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.34 E-value=0.035 Score=48.69 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=28.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
...+|-.+.|.|++|+||||+++.+...+...
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 34689999999999999999999999988764
No 340
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.34 E-value=0.0031 Score=53.38 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45899999999999999999999977653
No 341
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.33 E-value=0.0036 Score=52.92 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 342
>PRK06526 transposase; Provisional
Probab=96.32 E-value=0.0044 Score=54.47 Aligned_cols=35 Identities=29% Similarity=0.153 Sum_probs=29.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL 88 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~ 88 (259)
.+.-++|.||+|+|||+++..|...+-..|++|..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 45568999999999999999999988777887654
No 343
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0036 Score=53.76 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=26.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|-+++|.|+.||||||+++.|+..+..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999999887653
No 344
>PRK08727 hypothetical protein; Validated
Probab=96.32 E-value=0.0073 Score=52.26 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=31.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
...|+|.|++|+|||+++..+...+...|+++.++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 355999999999999999999998888888877654
No 345
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.31 E-value=0.011 Score=50.58 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|.+++|.|++|+||||++..++...-..|..+..+.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 457899999999999999999987654434577776654
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.31 E-value=0.0039 Score=50.99 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987664
No 347
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0038 Score=51.26 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46889999999999999999999987654
No 348
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.30 E-value=0.0038 Score=52.69 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45899999999999999999999987554
No 349
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0034 Score=57.57 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-++++.||+||||||+.+.|+--..
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45889999999999999999999987543
No 350
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0037 Score=53.78 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45789999999999999999999987654
No 351
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.30 E-value=0.0041 Score=51.10 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45889999999999999999999987664
No 352
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.30 E-value=0.0043 Score=54.56 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=27.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|.+++|.||.||||||+.+.|..-+..
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 468999999999999999999999998864
No 353
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.29 E-value=0.0064 Score=55.74 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p 92 (259)
++-+|.|.|+.||||||+...|...+... +..+..+..|
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 46789999999999999999999888642 3344444433
No 354
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.29 E-value=0.014 Score=50.53 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=30.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
-.+|.++.|.|++|+||||++..+...--..|.++.++.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 358999999999999999999887554324577776554
No 355
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.056 Score=44.25 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.+-+|-|+.||||||+-..+...+..
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~ 28 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLP 28 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcC
Confidence 457788899999999998887766653
No 356
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0039 Score=53.87 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 357
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.004 Score=53.03 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35889999999999999999999987654
No 358
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.27 E-value=0.0042 Score=51.34 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 359
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0039 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|.+++|.|+.||||||+.+.|+-.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999999853
No 360
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.26 E-value=0.004 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45899999999999999999999987654
No 361
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.26 E-value=0.0039 Score=53.80 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+++|.|+.||||||+.+.|+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999999876
No 362
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.26 E-value=0.014 Score=55.93 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=29.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh-hCC-CeEEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE-GLG-HSVELW 89 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g-~~v~~~ 89 (259)
.+|.+|.|.||.|+||||.+.+|+..+. ..| .+|..+
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4678999999999999999999999884 344 355443
No 363
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.25 E-value=0.0044 Score=51.12 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|++||||||+++.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45889999999999999999999987654
No 364
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.23 E-value=0.0042 Score=52.93 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|+-.+.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 35789999999999999999999987654
No 365
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.23 E-value=0.0088 Score=50.36 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l 79 (259)
.+.+|.||||+||||++..+...+
T Consensus 18 ~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 18 GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHh
Confidence 378999999999998888887777
No 366
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0042 Score=53.69 Aligned_cols=29 Identities=28% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|++||||||+.+.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 367
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.23 E-value=0.0044 Score=51.87 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999999988654
No 368
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.23 E-value=0.0044 Score=52.43 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 369
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.23 E-value=0.0043 Score=53.10 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45899999999999999999999987664
No 370
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.23 E-value=0.01 Score=55.79 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=25.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
.+.-|.+.||+|+||||+++.|++.++...+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 76 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3456889999999999999999999965433
No 371
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.23 E-value=0.0043 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 46899999999999999999999987653
No 372
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.23 E-value=0.0043 Score=53.22 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45889999999999999999999987654
No 373
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.22 E-value=0.0045 Score=48.83 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
...|++.|++|+||||+++.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999864
No 374
>COG4240 Predicted kinase [General function prediction only]
Probab=96.22 E-value=0.0081 Score=51.87 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=31.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEEE
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVEL 88 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~~ 88 (259)
..++.++.|.||-||||||++..|...|..+| +++..
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~ 84 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTAT 84 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEE
Confidence 35688999999999999999999999998887 45544
No 375
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.22 E-value=0.012 Score=50.60 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=31.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
..+|.++.|.|++||||||++..+....-..|.++.++..
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 4578999999999999999999996554345777766553
No 376
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.22 E-value=0.0043 Score=53.21 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987764
No 377
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.21 E-value=0.0043 Score=53.34 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35889999999999999999999998765
No 378
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.21 E-value=0.0046 Score=51.96 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987553
No 379
>PRK08181 transposase; Validated
Probab=96.21 E-value=0.0076 Score=53.45 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=31.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++.-++|.|++|+|||.++..++..+-..|++|..+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 4456999999999999999999998887898887654
No 380
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0044 Score=54.31 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 381
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.20 E-value=0.004 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~ 78 (259)
++|++.|.+||||||+++.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 58999999999999999998653
No 382
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.19 E-value=0.074 Score=44.06 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+|+|.+..|||++|+++.|+++|+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg 24 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG 24 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred CEEECCCCCCChHHHHHHHHHHcC
Confidence 699999999999999999999994
No 383
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.19 E-value=0.0045 Score=47.08 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 024986 58 VVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~ 77 (259)
|+|.|.+|+||||+.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999974
No 384
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.19 E-value=0.0049 Score=46.72 Aligned_cols=22 Identities=36% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l 79 (259)
|+|.|..|+||||+++.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998644
No 385
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.19 E-value=0.0082 Score=54.04 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=28.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEec
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~~ 91 (259)
.+..|+|.|+.||||||+++.|...+... +..++.+..
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 34678899999999999999999888542 334444443
No 386
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0046 Score=53.57 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999999999987664
No 387
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0046 Score=53.42 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999988664
No 388
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.18 E-value=0.0047 Score=52.51 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 46899999999999999999999987654
No 389
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0045 Score=53.90 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=25.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+.+.|.-.+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999998754
No 390
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.18 E-value=0.0048 Score=49.31 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|...+.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46889999999999999999999977654
No 391
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.18 E-value=0.0047 Score=53.64 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987654
No 392
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.17 E-value=0.0048 Score=52.40 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 35789999999999999999999987654
No 393
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0048 Score=52.81 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 45889999999999999999999987664
No 394
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.17 E-value=0.0048 Score=52.87 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|.+++|.|++||||||+++.|+..+.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999998664
No 395
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.17 E-value=0.005 Score=50.19 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999987654
No 396
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.17 E-value=0.0045 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~ 77 (259)
+-|.|.|+.||||||+++.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 3578889999999999999966
No 397
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.16 E-value=0.0045 Score=60.21 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=27.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
.+++++++.||+|+||||+++.|++.++..
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 467899999999999999999999999864
No 398
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0048 Score=53.63 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45889999999999999999999988764
No 399
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.16 E-value=0.0052 Score=53.65 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35799999999999999999999988664
No 400
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.16 E-value=0.0049 Score=53.25 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999988664
No 401
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.15 E-value=0.006 Score=58.51 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=30.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
.++.+..|+||+|+||||.++.|++.+ |+.++-+..|
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskel---g~~~~Ew~Np 144 (634)
T KOG1970|consen 108 LGSRILLLTGPSGCGKSTTVKVLSKEL---GYQLIEWSNP 144 (634)
T ss_pred CCceEEEEeCCCCCCchhHHHHHHHhh---CceeeeecCC
Confidence 356799999999999999999999998 6777655544
No 402
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.15 E-value=0.0044 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRL 75 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L 75 (259)
-+.|.+++|+|++||||||++..+
T Consensus 18 ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 18 IPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred ccCCcEEEEECCCCCchHHHHHHH
Confidence 478999999999999999999754
No 403
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.15 E-value=0.0081 Score=52.92 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
.|.-|.++|++|+||||+|..|++.+ |.++..+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i 52 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLI 52 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 45567789999999999999999876 4455543
No 404
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.15 E-value=0.0051 Score=51.75 Aligned_cols=29 Identities=41% Similarity=0.472 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|++||||||+++.|.-.+.
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 46899999999999999999999988664
No 405
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0054 Score=50.25 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45899999999999999999999988764
No 406
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.14 E-value=0.0051 Score=51.85 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|...+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999988664
No 407
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0051 Score=51.99 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 408
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.13 E-value=0.0048 Score=53.72 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|++||||||+++.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999988664
No 409
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.13 E-value=0.0051 Score=50.94 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999999999988765
No 410
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0052 Score=53.19 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987654
No 411
>PRK10908 cell division protein FtsE; Provisional
Probab=96.13 E-value=0.0053 Score=52.39 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 412
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.12 E-value=0.0049 Score=53.91 Aligned_cols=29 Identities=24% Similarity=0.238 Sum_probs=26.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999988764
No 413
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.12 E-value=0.0051 Score=52.74 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999987553
No 414
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.12 E-value=0.005 Score=55.98 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
+.-|.|+|++|+||||+++.|++.++..
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 4569999999999999999999999643
No 415
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0052 Score=53.51 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999999988764
No 416
>PRK09169 hypothetical protein; Validated
Probab=96.11 E-value=0.019 Score=62.74 Aligned_cols=112 Identities=12% Similarity=-0.113 Sum_probs=59.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
.+.-|+++|..|+||||+.+.|++.|....+... .+. ....|..|.+++...+ .. |-.....+.
T Consensus 2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD--~kI--eks~GrkI~rIFa~eG-~F-----------Re~Eaa~V~ 2172 (2316)
T PRK09169 2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSV--RKI--AKKIGKKIARIQALRG-LS-----------PEQAAARVR 2172 (2316)
T ss_pred hhcccceeeCCCCCHhHHHHHHHHHhCCCccccH--HHH--HHHhCCCHHHHHHhcC-ch-----------HHHHHHHHH
Confidence 3567999999999999999999999964221110 000 0112333444444322 10 111112344
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG 195 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R 195 (259)
..+. ...||..+... . ...+.... +..-.++|||+.+++++.+|+..+
T Consensus 2173 Dllr-~~vVLSTGGGa----v-----~~~enr~~----L~~~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2173 DALR-WEVVLPAEGFG----A-----AVEQARQA----LGAKGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred HHhc-CCeEEeCCCCc----c-----cCHHHHHH----HHHCCEEEEEECCHHHHHHHhccC
Confidence 4444 44555432211 0 01111111 223348999999999999998743
No 417
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0053 Score=53.74 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45899999999999999999999997664
No 418
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0053 Score=52.77 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45899999999999999999999987664
No 419
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.10 E-value=0.0054 Score=52.80 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999999999999999999987664
No 420
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.0055 Score=52.11 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46889999999999999999999987653
No 421
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.10 E-value=0.005 Score=51.50 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-..|-+++|.|++||||||+.+.++--..
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccC
Confidence 45788999999999999999999987553
No 422
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.10 E-value=0.0049 Score=60.15 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
...+|.|.|++||||||+++.|+..+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 457899999999999999999998874
No 423
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0053 Score=53.34 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45899999999999999999999996553
No 424
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.01 Score=51.91 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..++|.|++|+|||+++..++.++...|.++..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 46899999999999999999999988888887654
No 425
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.09 E-value=0.007 Score=51.27 Aligned_cols=29 Identities=17% Similarity=0.207 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+..+.|+|.|+.||||||+.+.|.+.+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35688999999999999999999988753
No 426
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.09 E-value=0.0055 Score=53.19 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999999987664
No 427
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.09 E-value=0.0054 Score=53.42 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|++||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 428
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0055 Score=53.85 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987664
No 429
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0051 Score=51.90 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 46889999999999999999999988765
No 430
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.08 E-value=0.0056 Score=51.45 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+-.+|-++.+.|++||||||+.+.|.....
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 346889999999999999999999977664
No 431
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0055 Score=53.70 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45899999999999999999999987653
No 432
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.07 E-value=0.0094 Score=53.53 Aligned_cols=30 Identities=23% Similarity=0.061 Sum_probs=28.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
..+..|.|.|+-||||||+.+.+.++++..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 578899999999999999999999999876
No 433
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.07 E-value=0.0056 Score=52.72 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 45899999999999999999999987764
No 434
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.07 E-value=0.006 Score=51.13 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987653
No 435
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.06 E-value=0.0057 Score=52.70 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999999988764
No 436
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0058 Score=52.46 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45899999999999999999999987764
No 437
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0056 Score=53.53 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45889999999999999999999998664
No 438
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.05 E-value=0.0057 Score=52.36 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|.-.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 45889999999999999999999987765
No 439
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0057 Score=52.56 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 440
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.0059 Score=53.83 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999999987664
No 441
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.04 E-value=0.0062 Score=51.49 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHH--hhCCCe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYL--EGLGHS 85 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l--~~~g~~ 85 (259)
..|.+++|.||.|+||||+.+.+.-.. ...|..
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~ 57 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAP 57 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE
Confidence 346899999999999999999997543 334543
No 442
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0059 Score=53.11 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+++.|+-.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4589999999999999999999998654
No 443
>PRK06921 hypothetical protein; Provisional
Probab=96.03 E-value=0.012 Score=52.16 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=32.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~ 90 (259)
.+.-++|.|++|+|||+++..++..+... |++|..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46678999999999999999999998776 88887654
No 444
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0057 Score=53.27 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|+-.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45899999999999999999999988764
No 445
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=96.03 E-value=0.017 Score=52.68 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
..++++|+|.|-.|+||||++..|+..|...|++|..+
T Consensus 28 ~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 28 TKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 35789999999999999999999999999889988654
No 446
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.03 E-value=0.003 Score=49.71 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~ 81 (259)
|.++|++|.||||+++.|++.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999998854
No 447
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.03 E-value=0.0062 Score=51.24 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+++|.|++||||||+.+.|+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999999876
No 448
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.0061 Score=53.67 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+++.|+-.+
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4589999999999999999999998754
No 449
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.02 E-value=0.0063 Score=51.92 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987764
No 450
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.01 E-value=0.0063 Score=53.45 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=26.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|.+++|.|+.||||||+.+.|.-.+..
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 468999999999999999999999887753
No 451
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0057 Score=53.80 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45899999999999999999999987654
No 452
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0061 Score=53.84 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987653
No 453
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.0058 Score=56.57 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|-||||+||||+++.|+...+.
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~ 74 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNA 74 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCC
Confidence 567899999999999999998854
No 454
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0064 Score=52.95 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 35899999999999999999999988763
No 455
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.0065 Score=52.80 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4589999999999999999999998754
No 456
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.0062 Score=53.40 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||.||||||+.+.+.--+.
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46889999999999999999999987554
No 457
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.98 E-value=0.0064 Score=51.59 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987664
No 458
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.98 E-value=0.0067 Score=51.82 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 46899999999999999999999987664
No 459
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.98 E-value=0.0069 Score=51.09 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 46899999999999999999999987654
No 460
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.98 E-value=0.011 Score=52.94 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p 92 (259)
+--+|.++||.||||||....+..+++.. ...++.+..|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDP 163 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDP 163 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCc
Confidence 34578899999999999999999999864 3333444444
No 461
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0067 Score=53.45 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45899999999999999999999998764
No 462
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.011 Score=52.02 Aligned_cols=39 Identities=33% Similarity=0.291 Sum_probs=34.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
++.-++|.|++|+|||.++..+..++-..|++|..+..|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 677899999999999999999999998779998876643
No 463
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0057 Score=60.29 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=29.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG 83 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g 83 (259)
.-.+|+++++.||||.|||++++-+++.++...
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 346899999999999999999999999997643
No 464
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.97 E-value=0.0067 Score=53.07 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 465
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0068 Score=52.70 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 45889999999999999999999997663
No 466
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.96 E-value=0.016 Score=47.89 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEec
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRF 91 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~ 91 (259)
..+.|.||+|+|||.+++.|++.+. ....+.+..+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~ 40 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDM 40 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhh
Confidence 3588999999999999999999997 44445555543
No 467
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0066 Score=53.55 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45899999999999999999999987653
No 468
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.96 E-value=0.007 Score=51.46 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|...+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987654
No 469
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0063 Score=53.71 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45789999999999999999999987654
No 470
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0069 Score=52.58 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578999999999999999999998765
No 471
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0067 Score=52.71 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=24.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+++|.|+.||||||+.+.|.-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999764
No 472
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.95 E-value=0.0068 Score=52.37 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45899999999999999999999987654
No 473
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.94 E-value=0.0068 Score=53.30 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999988664
No 474
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0071 Score=52.63 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45899999999999999999999987653
No 475
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.94 E-value=0.0062 Score=58.82 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|..++|.|++||||||+++.|...+.
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999987664
No 476
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.94 E-value=0.0063 Score=52.90 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+++|.|+.||||||+++.|+-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999999874
No 477
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.0066 Score=53.79 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|+-.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45889999999999999999999987654
No 478
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.94 E-value=0.0072 Score=51.39 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45889999999999999999999987664
No 479
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0071 Score=52.62 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|-+++|.|++||||||+++.|+-.+..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 358999999999999999999999887653
No 480
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.94 E-value=0.0068 Score=53.46 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|++||||||+++.|+-.+.
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999987553
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.93 E-value=0.018 Score=50.39 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|.++.|.|+||||||+++....-.....|.++.++.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 468899999999999999999999888877788887654
No 482
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.93 E-value=0.021 Score=48.75 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=30.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++|+|||+++..++...-..|.++.++.
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47899999999999999999988766544577776654
No 483
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.93 E-value=0.012 Score=53.24 Aligned_cols=39 Identities=26% Similarity=0.218 Sum_probs=33.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
.+.-+.|.|++|+|||.++..++..+...|+++..+..|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 456689999999999999999999998889988876643
No 484
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0069 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+++|.|+.||||||+++.|+-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 458999999999999999999999753
No 485
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.93 E-value=0.0073 Score=52.17 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|++||||||+.+.|.-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999987654
No 486
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.92 E-value=0.0074 Score=51.50 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 487
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0072 Score=53.34 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987664
No 488
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.92 E-value=0.0073 Score=50.60 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+.+.|+-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999998766
No 489
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.0072 Score=52.88 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987553
No 490
>PRK04328 hypothetical protein; Provisional
Probab=95.91 E-value=0.019 Score=50.20 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=30.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++|+||||++..+...--..|.++.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 57899999999999999999987665434577776554
No 491
>PLN03025 replication factor C subunit; Provisional
Probab=95.91 E-value=0.018 Score=52.07 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
-+.|.||+|+||||++..+++.+...++
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~ 63 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 4678999999999999999999865443
No 492
>PRK10646 ADP-binding protein; Provisional
Probab=95.91 E-value=0.0088 Score=48.57 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=27.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
...|.+|.+.|.-||||||+++.|++.|..
T Consensus 25 l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 25 CDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456889999999999999999999999953
No 493
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.91 E-value=0.0073 Score=52.15 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 494
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.91 E-value=0.014 Score=54.16 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=28.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEecC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWRFP 92 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~~p 92 (259)
.-+|+|.|+.||||||+...|.+++... +..++.+..|
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp 188 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDP 188 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 3478899999999999999999988532 2345555544
No 495
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0071 Score=53.61 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45889999999999999999999987664
No 496
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0072 Score=53.35 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987764
No 497
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.91 E-value=0.013 Score=53.25 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+..|+|.|+.||||||+++.|...+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999998874
No 498
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0071 Score=53.54 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+++.|.-.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46899999999999999999999987654
No 499
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.90 E-value=0.0072 Score=53.31 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999987664
No 500
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0071 Score=52.99 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999999988664
Done!