Query 024986
Match_columns 259
No_of_seqs 152 out of 1306
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hlc_A DTMP kinase, thymidylat 100.0 5.9E-40 2E-44 278.0 23.8 190 55-246 2-204 (205)
2 3tmk_A Thymidylate kinase; pho 100.0 5.5E-40 1.9E-44 280.2 23.7 201 52-255 2-215 (216)
3 4edh_A DTMP kinase, thymidylat 100.0 1.7E-38 5.8E-43 270.6 25.9 194 52-246 3-210 (213)
4 4tmk_A Protein (thymidylate ki 100.0 9.8E-39 3.4E-43 272.0 23.6 193 54-247 2-211 (213)
5 3hjn_A DTMP kinase, thymidylat 100.0 1.2E-38 4E-43 268.5 22.6 186 56-244 1-193 (197)
6 3v9p_A DTMP kinase, thymidylat 100.0 8E-38 2.7E-42 268.7 21.0 189 52-242 22-226 (227)
7 3lv8_A DTMP kinase, thymidylat 100.0 3.9E-37 1.3E-41 265.9 25.0 195 51-246 23-232 (236)
8 3ld9_A DTMP kinase, thymidylat 100.0 2.3E-37 7.7E-42 265.1 19.3 195 47-246 13-219 (223)
9 4eaq_A DTMP kinase, thymidylat 100.0 1.4E-32 4.9E-37 236.2 20.1 192 52-245 23-227 (229)
10 2v54_A DTMP kinase, thymidylat 100.0 1.7E-31 5.7E-36 223.2 23.1 199 53-258 2-204 (204)
11 1nn5_A Similar to deoxythymidy 100.0 6.8E-31 2.3E-35 221.0 26.3 206 52-258 6-215 (215)
12 2wwf_A Thymidilate kinase, put 100.0 2.1E-31 7.3E-36 223.8 21.8 204 52-258 7-212 (212)
13 2z0h_A DTMP kinase, thymidylat 100.0 8.4E-30 2.9E-34 211.5 19.9 187 56-245 1-194 (197)
14 2plr_A DTMP kinase, probable t 100.0 1.7E-27 5.8E-32 199.5 21.5 188 53-246 2-211 (213)
15 2pbr_A DTMP kinase, thymidylat 99.9 3.6E-26 1.2E-30 188.8 21.0 186 56-244 1-193 (195)
16 1gtv_A TMK, thymidylate kinase 99.9 5.1E-26 1.8E-30 191.2 -3.9 184 56-239 1-210 (214)
17 1p5z_B DCK, deoxycytidine kina 99.9 6.3E-25 2.1E-29 191.5 1.5 188 51-245 20-261 (263)
18 2vp4_A Deoxynucleoside kinase; 99.9 5.9E-25 2E-29 188.3 -0.1 190 52-246 17-228 (230)
19 1p6x_A Thymidine kinase; P-loo 99.9 5.6E-24 1.9E-28 191.7 5.7 163 52-216 4-201 (334)
20 1e2k_A Thymidine kinase; trans 99.9 2.3E-22 7.8E-27 181.0 8.7 161 53-216 2-198 (331)
21 1osn_A Thymidine kinase, VZV-T 99.9 4.8E-22 1.6E-26 179.4 10.8 162 52-216 9-210 (341)
22 1of1_A Thymidine kinase; trans 99.9 4.4E-22 1.5E-26 181.5 8.6 162 51-216 45-243 (376)
23 2ocp_A DGK, deoxyguanosine kin 99.8 3.7E-23 1.3E-27 177.9 -1.0 185 54-243 1-234 (241)
24 1nks_A Adenylate kinase; therm 99.8 4.3E-20 1.5E-24 151.8 16.3 169 56-240 2-193 (194)
25 3kb2_A SPBC2 prophage-derived 99.8 8.3E-20 2.8E-24 147.7 14.2 161 56-246 2-170 (173)
26 2jaq_A Deoxyguanosine kinase; 99.8 5.9E-20 2E-24 152.5 13.5 175 56-243 1-201 (205)
27 2c95_A Adenylate kinase 1; tra 99.8 7.8E-19 2.7E-23 145.0 15.8 171 52-244 6-195 (196)
28 3umf_A Adenylate kinase; rossm 99.8 3E-18 1E-22 145.8 18.7 169 52-242 26-213 (217)
29 2bwj_A Adenylate kinase 5; pho 99.8 2.7E-18 9.4E-23 142.1 16.3 171 53-244 10-198 (199)
30 1zak_A Adenylate kinase; ATP:A 99.8 1.5E-18 5.2E-23 147.0 12.8 180 53-250 3-218 (222)
31 2xb4_A Adenylate kinase; ATP-b 99.8 6.2E-18 2.1E-22 143.8 14.9 163 56-240 1-222 (223)
32 1tev_A UMP-CMP kinase; ploop, 99.8 2.4E-17 8.4E-22 135.5 17.9 172 54-242 2-194 (196)
33 3czq_A Putative polyphosphate 99.8 1.7E-19 5.7E-24 159.8 3.5 163 53-242 84-278 (304)
34 3sr0_A Adenylate kinase; phosp 99.7 2.7E-17 9.3E-22 138.8 15.8 164 56-242 1-204 (206)
35 3be4_A Adenylate kinase; malar 99.7 6E-17 2.1E-21 136.9 16.1 163 54-239 4-216 (217)
36 1aky_A Adenylate kinase; ATP:A 99.7 1.8E-16 6.3E-21 133.9 18.6 169 53-241 2-218 (220)
37 2cdn_A Adenylate kinase; phosp 99.7 9E-17 3.1E-21 133.9 16.5 171 51-240 16-199 (201)
38 3tlx_A Adenylate kinase 2; str 99.7 3.2E-16 1.1E-20 135.1 20.0 168 52-241 26-242 (243)
39 1ukz_A Uridylate kinase; trans 99.7 2.9E-16 9.9E-21 130.7 18.7 169 52-243 12-202 (203)
40 3cm0_A Adenylate kinase; ATP-b 99.7 7.3E-17 2.5E-21 132.3 13.4 163 53-240 2-184 (186)
41 1qf9_A UMP/CMP kinase, protein 99.7 4.5E-17 1.5E-21 133.7 12.0 168 54-242 5-191 (194)
42 2yvu_A Probable adenylyl-sulfa 99.7 4.8E-17 1.6E-21 133.9 12.2 168 52-244 10-185 (186)
43 1ak2_A Adenylate kinase isoenz 99.7 6.7E-16 2.3E-20 131.9 19.1 168 53-243 14-231 (233)
44 1kht_A Adenylate kinase; phosp 99.7 3.9E-16 1.3E-20 128.0 16.2 174 54-240 2-191 (192)
45 1e4v_A Adenylate kinase; trans 99.7 1.6E-16 5.5E-21 133.8 14.1 158 56-240 1-213 (214)
46 3a4m_A L-seryl-tRNA(SEC) kinas 99.7 2.4E-16 8.2E-21 137.1 15.1 164 53-241 2-172 (260)
47 2rhm_A Putative kinase; P-loop 99.7 1.1E-16 3.7E-21 131.8 11.4 174 52-246 2-188 (193)
48 1m7g_A Adenylylsulfate kinase; 99.7 6.6E-16 2.3E-20 129.9 16.2 159 52-242 22-202 (211)
49 3fb4_A Adenylate kinase; psych 99.7 1.2E-15 4E-20 128.3 17.7 165 56-242 1-214 (216)
50 3dl0_A Adenylate kinase; phosp 99.7 9.9E-16 3.4E-20 128.8 17.0 164 56-242 1-214 (216)
51 1zd8_A GTP:AMP phosphotransfer 99.7 7E-16 2.4E-20 131.0 16.0 168 52-246 4-218 (227)
52 3t61_A Gluconokinase; PSI-biol 99.7 1.3E-15 4.3E-20 127.0 14.9 163 53-242 16-179 (202)
53 3lw7_A Adenylate kinase relate 99.7 2.6E-15 8.9E-20 120.7 16.2 164 56-244 2-178 (179)
54 2vli_A Antibiotic resistance p 99.7 5.6E-16 1.9E-20 126.5 11.8 173 54-250 4-179 (183)
55 3gmt_A Adenylate kinase; ssgci 99.7 5.4E-16 1.8E-20 132.7 11.1 166 54-241 7-228 (230)
56 1ly1_A Polynucleotide kinase; 99.6 2E-14 6.9E-19 116.6 16.2 162 55-242 2-172 (181)
57 3czp_A Putative polyphosphate 99.6 6.7E-15 2.3E-19 138.9 13.1 170 52-247 40-240 (500)
58 2pt5_A Shikimate kinase, SK; a 99.6 1.1E-14 3.9E-19 117.2 9.8 157 56-241 1-162 (168)
59 2pez_A Bifunctional 3'-phospho 99.5 2.8E-14 9.5E-19 116.6 10.6 163 53-242 3-175 (179)
60 3czp_A Putative polyphosphate 99.5 5.6E-15 1.9E-19 139.4 6.5 168 53-246 298-496 (500)
61 1x6v_B Bifunctional 3'-phospho 99.5 7.2E-14 2.4E-18 135.1 13.4 166 53-243 50-223 (630)
62 4eun_A Thermoresistant glucoki 99.5 7.1E-13 2.4E-17 110.3 17.7 165 53-241 27-192 (200)
63 1vht_A Dephospho-COA kinase; s 99.5 5.4E-13 1.8E-17 112.2 16.5 166 53-245 2-197 (218)
64 1knq_A Gluconate kinase; ALFA/ 99.5 3.3E-12 1.1E-16 103.5 18.8 164 53-241 6-172 (175)
65 3vaa_A Shikimate kinase, SK; s 99.5 1.6E-12 5.6E-17 108.0 16.4 165 51-244 21-197 (199)
66 2qor_A Guanylate kinase; phosp 99.4 7.5E-13 2.6E-17 110.5 9.5 172 52-244 9-198 (204)
67 1zuh_A Shikimate kinase; alpha 99.4 2.3E-12 8E-17 103.9 11.2 152 55-240 7-167 (168)
68 2gks_A Bifunctional SAT/APS ki 99.4 3.5E-12 1.2E-16 122.0 13.0 165 54-242 371-540 (546)
69 1e6c_A Shikimate kinase; phosp 99.4 1.2E-11 4E-16 99.7 14.2 154 56-241 3-169 (173)
70 3trf_A Shikimate kinase, SK; a 99.4 7.3E-11 2.5E-15 96.3 18.9 160 54-245 4-177 (185)
71 1m8p_A Sulfate adenylyltransfe 99.4 2.2E-12 7.6E-17 124.0 10.5 162 53-242 394-566 (573)
72 2f6r_A COA synthase, bifunctio 99.3 3.2E-11 1.1E-15 105.9 16.9 190 32-246 47-272 (281)
73 1cke_A CK, MSSA, protein (cyti 99.3 5.2E-11 1.8E-15 100.2 16.5 73 172-244 138-224 (227)
74 2bbw_A Adenylate kinase 4, AK4 99.3 2.4E-11 8.1E-16 104.2 13.8 167 53-245 25-237 (246)
75 2iyv_A Shikimate kinase, SK; t 99.3 3.2E-11 1.1E-15 98.4 13.3 156 55-241 2-167 (184)
76 3uie_A Adenylyl-sulfate kinase 99.3 2.9E-11 9.8E-16 100.5 12.5 165 52-242 22-194 (200)
77 1uf9_A TT1252 protein; P-loop, 99.3 3E-11 1E-15 99.7 12.1 175 52-251 5-202 (203)
78 1qhx_A CPT, protein (chloramph 99.3 1.6E-10 5.5E-15 93.5 15.8 156 54-240 2-176 (178)
79 3rhf_A Putative polyphosphate 99.3 8.5E-12 2.9E-16 109.2 8.5 116 54-195 74-200 (289)
80 2qt1_A Nicotinamide riboside k 99.3 6E-12 2.1E-16 104.9 7.2 70 173-242 128-205 (207)
81 1via_A Shikimate kinase; struc 99.3 7.5E-11 2.6E-15 95.6 12.7 66 175-241 93-165 (175)
82 1kag_A SKI, shikimate kinase I 99.2 1.1E-10 3.7E-15 94.1 13.0 64 175-241 97-171 (173)
83 1ltq_A Polynucleotide kinase; 99.2 1.3E-10 4.4E-15 102.2 14.1 153 55-232 2-173 (301)
84 3iij_A Coilin-interacting nucl 99.2 2.2E-11 7.7E-16 99.1 8.4 154 53-244 9-175 (180)
85 2if2_A Dephospho-COA kinase; a 99.2 4.5E-11 1.5E-15 99.2 8.3 69 174-244 123-193 (204)
86 1jjv_A Dephospho-COA kinase; P 99.2 4E-09 1.4E-13 87.5 20.0 67 174-245 123-199 (206)
87 3tr0_A Guanylate kinase, GMP k 99.1 2.5E-10 8.6E-15 94.3 10.9 168 52-243 4-187 (205)
88 3tau_A Guanylate kinase, GMP k 99.1 1.2E-10 4.1E-15 97.5 9.0 171 51-243 4-189 (208)
89 3nwj_A ATSK2; P loop, shikimat 99.1 1.9E-09 6.4E-14 93.3 16.7 164 55-247 48-241 (250)
90 4e22_A Cytidylate kinase; P-lo 99.1 8.8E-10 3E-14 95.1 14.6 72 172-245 160-247 (252)
91 3r20_A Cytidylate kinase; stru 99.1 5E-09 1.7E-13 89.7 18.1 73 172-244 143-229 (233)
92 1y63_A LMAJ004144AAA protein; 99.1 7.1E-10 2.4E-14 90.9 12.3 27 52-78 7-33 (184)
93 1q3t_A Cytidylate kinase; nucl 99.1 8.2E-09 2.8E-13 87.8 19.2 70 174-243 152-235 (236)
94 4i1u_A Dephospho-COA kinase; s 99.1 3.4E-09 1.2E-13 89.3 15.9 165 55-245 9-204 (210)
95 3ake_A Cytidylate kinase; CMP 99.1 1.6E-08 5.4E-13 83.5 19.5 68 173-241 134-207 (208)
96 2grj_A Dephospho-COA kinase; T 99.1 2.8E-09 9.5E-14 88.6 13.7 159 53-243 10-187 (192)
97 3fdi_A Uncharacterized protein 99.1 2.9E-09 9.8E-14 89.0 13.7 66 176-241 118-197 (201)
98 2j41_A Guanylate kinase; GMP, 99.0 2E-10 7E-15 94.9 6.3 169 53-244 4-188 (207)
99 1uj2_A Uridine-cytidine kinase 99.0 1.7E-09 5.7E-14 93.1 11.4 70 175-245 151-236 (252)
100 1ex7_A Guanylate kinase; subst 99.0 1.6E-09 5.6E-14 89.6 9.7 165 56-241 2-183 (186)
101 2h92_A Cytidylate kinase; ross 99.0 1.4E-08 4.9E-13 84.8 14.1 70 172-241 133-216 (219)
102 3hdt_A Putative kinase; struct 98.9 3.7E-08 1.2E-12 83.7 16.0 67 176-242 138-218 (223)
103 3ney_A 55 kDa erythrocyte memb 98.9 1.2E-08 4.1E-13 85.1 11.7 166 48-242 12-189 (197)
104 2bdt_A BH3686; alpha-beta prot 98.8 6.5E-08 2.2E-12 79.0 13.0 158 55-237 2-168 (189)
105 1zp6_A Hypothetical protein AT 98.8 1.3E-08 4.6E-13 83.0 8.5 164 52-242 6-175 (191)
106 3cr8_A Sulfate adenylyltranfer 98.8 6.5E-08 2.2E-12 92.5 14.0 166 53-242 367-539 (552)
107 3lnc_A Guanylate kinase, GMP k 98.8 2.5E-08 8.5E-13 84.3 9.9 170 53-243 25-209 (231)
108 1gvn_B Zeta; postsegregational 98.8 1E-07 3.5E-12 83.8 14.2 121 53-193 31-160 (287)
109 3a00_A Guanylate kinase, GMP k 98.7 3.8E-08 1.3E-12 80.6 9.7 165 55-241 1-183 (186)
110 1kgd_A CASK, peripheral plasma 98.7 1.1E-07 3.6E-12 77.6 10.3 28 53-80 3-30 (180)
111 1s96_A Guanylate kinase, GMP k 98.7 1.3E-07 4.3E-12 80.0 11.0 170 51-242 12-197 (219)
112 3zvl_A Bifunctional polynucleo 98.7 2.5E-08 8.6E-13 92.1 6.7 134 52-226 255-397 (416)
113 2p5t_B PEZT; postsegregational 98.6 2.9E-08 9.9E-13 85.4 6.2 29 52-80 29-57 (253)
114 1rz3_A Hypothetical protein rb 98.5 1.1E-06 3.6E-11 72.8 12.3 39 52-90 19-57 (201)
115 2axn_A 6-phosphofructo-2-kinas 98.5 2.2E-06 7.5E-11 81.4 15.1 38 53-90 33-70 (520)
116 1lvg_A Guanylate kinase, GMP k 98.3 1.6E-05 5.5E-10 65.6 13.0 28 53-80 2-29 (198)
117 2jeo_A Uridine-cytidine kinase 98.2 7.6E-06 2.6E-10 69.7 11.0 29 52-80 22-50 (245)
118 3ch4_B Pmkase, phosphomevalona 98.1 2.1E-05 7E-10 65.6 10.2 33 53-85 9-41 (202)
119 3a8t_A Adenylate isopentenyltr 98.0 6.4E-06 2.2E-10 73.9 5.1 28 53-80 38-65 (339)
120 1bif_A 6-phosphofructo-2-kinas 97.9 0.00022 7.5E-09 66.5 14.2 38 53-90 37-74 (469)
121 1kjw_A Postsynaptic density pr 97.7 0.00036 1.2E-08 61.4 12.3 163 52-242 102-281 (295)
122 1a7j_A Phosphoribulokinase; tr 97.7 1.6E-05 5.5E-10 69.8 3.6 38 53-90 3-40 (290)
123 4gp7_A Metallophosphoesterase; 97.7 0.0015 5.1E-08 52.3 14.1 115 53-197 7-123 (171)
124 3tvt_A Disks large 1 tumor sup 97.6 0.00037 1.3E-08 61.3 11.1 166 53-243 98-277 (292)
125 1xjc_A MOBB protein homolog; s 97.6 9E-05 3.1E-09 60.0 5.7 36 55-90 4-39 (169)
126 3asz_A Uridine kinase; cytidin 97.6 4.8E-05 1.7E-09 62.7 4.1 28 53-80 4-31 (211)
127 3c8u_A Fructokinase; YP_612366 97.6 9E-05 3.1E-09 61.3 5.6 32 52-83 19-50 (208)
128 2ze6_A Isopentenyl transferase 97.4 7.1E-05 2.4E-09 64.2 3.7 25 56-80 2-26 (253)
129 1np6_A Molybdopterin-guanine d 97.4 0.00021 7.1E-09 58.0 5.8 37 54-90 5-41 (174)
130 3ec2_A DNA replication protein 97.3 0.00016 5.3E-09 58.2 4.2 37 53-89 36-73 (180)
131 1z6g_A Guanylate kinase; struc 97.3 9.8E-05 3.4E-09 61.8 3.0 29 51-79 19-47 (218)
132 2kjq_A DNAA-related protein; s 97.3 0.00026 9E-09 55.7 5.3 38 54-91 35-72 (149)
133 1odf_A YGR205W, hypothetical 3 97.3 0.0002 7E-09 62.8 4.6 32 52-83 28-59 (290)
134 3bos_A Putative DNA replicatio 97.3 0.00037 1.2E-08 57.7 5.8 37 54-90 51-87 (242)
135 3e70_C DPA, signal recognition 97.3 0.00067 2.3E-08 60.5 7.9 40 53-92 127-166 (328)
136 1vma_A Cell division protein F 97.2 0.0006 2.1E-08 60.2 7.4 38 53-90 102-139 (306)
137 2orw_A Thymidine kinase; TMTK, 97.2 0.00042 1.4E-08 56.5 5.8 36 54-89 2-37 (184)
138 2xkx_A Disks large homolog 4; 97.2 0.0018 6.3E-08 63.6 11.2 163 53-242 529-707 (721)
139 3dm5_A SRP54, signal recogniti 97.2 0.00081 2.8E-08 62.4 7.9 38 54-91 99-136 (443)
140 2px0_A Flagellar biosynthesis 97.2 0.0011 3.7E-08 58.2 8.1 39 53-91 103-142 (296)
141 1g8f_A Sulfate adenylyltransfe 97.1 0.00023 7.8E-09 67.3 3.7 29 53-81 393-421 (511)
142 1xx6_A Thymidine kinase; NESG, 97.1 0.00072 2.5E-08 55.6 6.2 38 53-90 6-43 (191)
143 2b8t_A Thymidine kinase; deoxy 97.1 0.00064 2.2E-08 57.4 5.9 39 53-91 10-48 (223)
144 1sq5_A Pantothenate kinase; P- 97.1 0.00062 2.1E-08 59.9 6.0 28 53-80 78-105 (308)
145 3kl4_A SRP54, signal recogniti 97.1 0.00079 2.7E-08 62.3 6.7 39 53-91 95-133 (433)
146 3crm_A TRNA delta(2)-isopenten 97.1 0.00026 8.9E-09 63.1 3.3 26 55-80 5-30 (323)
147 1znw_A Guanylate kinase, GMP k 97.1 0.00032 1.1E-08 57.8 3.6 29 52-80 17-45 (207)
148 3aez_A Pantothenate kinase; tr 97.1 0.00044 1.5E-08 61.2 4.5 30 52-81 87-116 (312)
149 3tqc_A Pantothenate kinase; bi 97.0 0.00043 1.5E-08 61.6 4.4 30 52-81 89-118 (321)
150 2j9r_A Thymidine kinase; TK1, 97.0 0.001 3.5E-08 55.8 6.4 39 53-91 26-64 (214)
151 1ye8_A Protein THEP1, hypothet 97.0 0.00044 1.5E-08 56.1 4.0 25 56-80 1-25 (178)
152 1rj9_A FTSY, signal recognitio 97.0 0.00069 2.3E-08 59.8 5.6 38 53-90 100-137 (304)
153 2w58_A DNAI, primosome compone 97.0 0.00084 2.9E-08 54.7 5.7 35 56-90 55-89 (202)
154 3exa_A TRNA delta(2)-isopenten 97.0 0.0003 1E-08 62.5 3.0 27 54-80 2-28 (322)
155 3d3q_A TRNA delta(2)-isopenten 97.0 0.00037 1.3E-08 62.5 3.5 25 56-80 8-32 (340)
156 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00083 2.8E-08 55.3 5.4 39 53-91 21-59 (235)
157 3b9q_A Chloroplast SRP recepto 97.0 0.0014 4.8E-08 57.7 7.1 39 52-90 97-135 (302)
158 2eyu_A Twitching motility prot 97.0 0.00093 3.2E-08 57.6 5.8 30 52-81 22-51 (261)
159 1htw_A HI0065; nucleotide-bind 97.0 0.00052 1.8E-08 54.7 3.8 29 52-80 30-58 (158)
160 1jbk_A CLPB protein; beta barr 97.0 0.0011 3.8E-08 52.4 5.7 28 54-81 42-69 (195)
161 1zu4_A FTSY; GTPase, signal re 96.9 0.0012 4.1E-08 58.6 6.0 39 53-91 103-141 (320)
162 3shw_A Tight junction protein 96.9 0.00085 2.9E-08 62.7 5.1 144 52-243 221-373 (468)
163 3foz_A TRNA delta(2)-isopenten 96.9 0.00053 1.8E-08 60.8 3.3 27 54-80 9-35 (316)
164 2f1r_A Molybdopterin-guanine d 96.9 0.00046 1.6E-08 55.8 2.7 31 56-86 3-33 (171)
165 2i3b_A HCR-ntpase, human cance 96.8 0.00084 2.9E-08 55.1 3.9 29 55-83 1-29 (189)
166 2dr3_A UPF0273 protein PH0284; 96.8 0.0016 5.5E-08 54.2 5.7 38 53-90 21-58 (247)
167 3p32_A Probable GTPase RV1496/ 96.8 0.0016 5.6E-08 58.4 5.9 38 53-90 77-114 (355)
168 2og2_A Putative signal recogni 96.8 0.0014 4.8E-08 59.2 5.5 39 52-90 154-192 (359)
169 1cr0_A DNA primase/helicase; R 96.8 0.0018 6.1E-08 56.2 5.9 39 52-90 32-71 (296)
170 2p65_A Hypothetical protein PF 96.8 0.0014 4.6E-08 51.9 4.8 28 54-81 42-69 (187)
171 2ehv_A Hypothetical protein PH 96.8 0.0015 5.1E-08 54.6 5.2 25 53-77 28-52 (251)
172 3tsz_A Tight junction protein 96.8 0.0032 1.1E-07 57.4 7.8 145 52-242 229-380 (391)
173 1yrb_A ATP(GTP)binding protein 96.7 0.0027 9.1E-08 53.7 6.7 38 52-90 11-48 (262)
174 1j8m_F SRP54, signal recogniti 96.7 0.0031 1E-07 55.4 7.3 39 54-92 97-135 (297)
175 2qmh_A HPR kinase/phosphorylas 96.7 0.00046 1.6E-08 57.4 1.8 28 53-80 32-59 (205)
176 3t15_A Ribulose bisphosphate c 96.7 0.0016 5.4E-08 56.8 5.3 35 53-90 34-68 (293)
177 2yhs_A FTSY, cell division pro 96.7 0.0016 5.3E-08 61.3 5.5 38 52-89 290-327 (503)
178 2www_A Methylmalonic aciduria 96.7 0.0021 7E-08 57.7 6.0 37 53-89 72-108 (349)
179 2cvh_A DNA repair and recombin 96.7 0.0018 6E-08 53.1 5.1 37 52-91 17-53 (220)
180 2v9p_A Replication protein E1; 96.7 0.0012 4.2E-08 58.3 4.2 29 51-79 122-150 (305)
181 1l8q_A Chromosomal replication 96.7 0.0019 6.4E-08 56.7 5.3 37 54-90 36-72 (324)
182 3jvv_A Twitching mobility prot 96.7 0.0021 7.1E-08 58.0 5.7 35 54-88 122-157 (356)
183 4a74_A DNA repair and recombin 96.6 0.0011 3.9E-08 54.6 3.5 28 53-80 23-50 (231)
184 3tif_A Uncharacterized ABC tra 96.6 0.0011 3.9E-08 56.1 3.6 29 52-80 28-56 (235)
185 3eph_A TRNA isopentenyltransfe 96.6 0.0012 4.1E-08 60.5 3.9 27 55-81 2-28 (409)
186 2qm8_A GTPase/ATPase; G protei 96.6 0.0026 8.8E-08 56.8 5.9 37 52-88 52-88 (337)
187 1svm_A Large T antigen; AAA+ f 96.6 0.0014 4.8E-08 59.6 4.2 29 52-80 166-194 (377)
188 2j37_W Signal recognition part 96.6 0.0022 7.7E-08 60.4 5.7 38 53-90 99-136 (504)
189 2ewv_A Twitching motility prot 96.6 0.0024 8.1E-08 57.8 5.6 31 52-82 133-163 (372)
190 3syl_A Protein CBBX; photosynt 96.6 0.0029 9.8E-08 54.8 6.0 32 53-84 65-96 (309)
191 2r8r_A Sensor protein; KDPD, P 96.6 0.0032 1.1E-07 53.2 6.0 38 53-90 3-41 (228)
192 1p9r_A General secretion pathw 96.6 0.0026 8.8E-08 58.6 5.7 40 53-92 165-204 (418)
193 1ls1_A Signal recognition part 96.6 0.0029 1E-07 55.4 5.8 38 54-91 97-134 (295)
194 2xxa_A Signal recognition part 96.5 0.0029 9.9E-08 58.5 6.0 39 53-91 98-137 (433)
195 2pcj_A ABC transporter, lipopr 96.5 0.0012 4.1E-08 55.5 3.0 29 52-80 27-55 (224)
196 2p67_A LAO/AO transport system 96.5 0.0031 1.1E-07 56.2 5.8 38 52-89 53-90 (341)
197 2qgz_A Helicase loader, putati 96.5 0.0033 1.1E-07 55.3 5.9 37 55-91 152-189 (308)
198 2cbz_A Multidrug resistance-as 96.5 0.0015 5.2E-08 55.3 3.6 29 52-80 28-56 (237)
199 2v3c_C SRP54, signal recogniti 96.5 0.0012 4.1E-08 61.1 3.1 37 54-90 98-134 (432)
200 1mv5_A LMRA, multidrug resista 96.4 0.0015 5.2E-08 55.5 3.2 29 52-80 25-53 (243)
201 2x8a_A Nuclear valosin-contain 96.4 0.0018 6E-08 56.1 3.6 27 52-80 43-69 (274)
202 1b0u_A Histidine permease; ABC 96.4 0.0015 5.2E-08 56.2 3.2 29 52-80 29-57 (262)
203 2pze_A Cystic fibrosis transme 96.4 0.0015 5.2E-08 55.0 3.0 29 52-80 31-59 (229)
204 3hr8_A Protein RECA; alpha and 96.4 0.0037 1.3E-07 56.4 5.8 39 53-91 59-97 (356)
205 1fnn_A CDC6P, cell division co 96.4 0.0082 2.8E-07 53.3 8.1 35 57-91 46-81 (389)
206 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0019 6.3E-08 55.2 3.6 27 52-78 26-52 (250)
207 1dek_A Deoxynucleoside monopho 96.4 0.0015 5.2E-08 55.7 3.0 68 173-241 166-239 (241)
208 1njg_A DNA polymerase III subu 96.4 0.0023 8E-08 52.2 4.1 28 55-82 45-72 (250)
209 2qby_A CDC6 homolog 1, cell di 96.4 0.0029 9.9E-08 56.0 5.0 38 53-90 43-83 (386)
210 2v1u_A Cell division control p 96.4 0.0052 1.8E-07 54.4 6.6 40 53-92 42-87 (387)
211 3n70_A Transport activator; si 96.4 0.002 7E-08 49.9 3.4 34 54-87 23-56 (145)
212 2zu0_C Probable ATP-dependent 96.4 0.002 6.9E-08 55.6 3.7 27 52-78 43-69 (267)
213 2ff7_A Alpha-hemolysin translo 96.4 0.0018 6.3E-08 55.2 3.4 29 52-80 32-60 (247)
214 2ffh_A Protein (FFH); SRP54, s 96.4 0.0063 2.2E-07 56.1 7.2 38 54-91 97-134 (425)
215 3gfo_A Cobalt import ATP-bindi 96.4 0.0018 6.2E-08 56.3 3.4 29 52-80 31-59 (275)
216 1vpl_A ABC transporter, ATP-bi 96.4 0.0017 5.9E-08 55.8 3.2 29 52-80 38-66 (256)
217 2ghi_A Transport protein; mult 96.4 0.002 6.8E-08 55.4 3.6 29 52-80 43-71 (260)
218 1ixz_A ATP-dependent metallopr 96.4 0.0021 7.1E-08 54.4 3.6 26 53-80 49-74 (254)
219 2ixe_A Antigen peptide transpo 96.4 0.002 6.8E-08 55.8 3.6 29 52-80 42-70 (271)
220 2olj_A Amino acid ABC transpor 96.4 0.0018 6.1E-08 55.9 3.2 29 52-80 47-75 (263)
221 1ji0_A ABC transporter; ATP bi 96.4 0.0017 5.9E-08 55.1 3.1 29 52-80 29-57 (240)
222 4g1u_C Hemin import ATP-bindin 96.4 0.0017 5.8E-08 56.1 3.0 29 52-80 34-62 (266)
223 1sgw_A Putative ABC transporte 96.4 0.0015 5.2E-08 54.6 2.6 28 53-80 33-60 (214)
224 4fcw_A Chaperone protein CLPB; 96.3 0.0037 1.3E-07 54.1 5.2 35 56-90 48-82 (311)
225 1g6h_A High-affinity branched- 96.3 0.0018 6.2E-08 55.5 3.1 29 52-80 30-58 (257)
226 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.003 1E-07 53.2 4.3 34 54-90 38-71 (262)
227 3j16_B RLI1P; ribosome recycli 96.3 0.0033 1.1E-07 60.6 5.0 29 52-80 100-128 (608)
228 3b85_A Phosphate starvation-in 96.3 0.0015 5.2E-08 54.3 2.3 26 53-78 20-45 (208)
229 2qby_B CDC6 homolog 3, cell di 96.3 0.0043 1.5E-07 55.2 5.4 38 53-90 43-88 (384)
230 2yz2_A Putative ABC transporte 96.3 0.0021 7.3E-08 55.4 3.2 29 52-80 30-58 (266)
231 1lv7_A FTSH; alpha/beta domain 96.3 0.0025 8.5E-08 54.0 3.6 24 57-80 47-70 (257)
232 2chg_A Replication factor C sm 96.3 0.0027 9.3E-08 51.3 3.6 27 57-83 40-66 (226)
233 3kfv_A Tight junction protein 96.3 0.027 9.3E-07 49.6 10.2 139 52-242 142-289 (308)
234 2qi9_C Vitamin B12 import ATP- 96.3 0.0021 7.3E-08 54.9 3.0 29 52-80 23-51 (249)
235 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0059 2E-07 51.2 5.5 39 53-91 26-64 (219)
236 2zr9_A Protein RECA, recombina 96.2 0.0056 1.9E-07 54.9 5.8 38 53-90 59-96 (349)
237 1u94_A RECA protein, recombina 96.2 0.0058 2E-07 55.0 5.8 38 53-90 61-98 (356)
238 1n0w_A DNA repair protein RAD5 96.2 0.0029 9.8E-08 52.6 3.6 26 53-78 22-47 (243)
239 3cf0_A Transitional endoplasmi 96.2 0.003 1E-07 55.2 3.8 28 53-80 47-74 (301)
240 2nq2_C Hypothetical ABC transp 96.2 0.0023 7.8E-08 54.8 3.0 29 52-80 28-56 (253)
241 2ihy_A ABC transporter, ATP-bi 96.2 0.0023 8E-08 55.6 3.0 29 52-80 44-72 (279)
242 2r2a_A Uncharacterized protein 96.2 0.0043 1.5E-07 51.2 4.5 37 54-90 4-46 (199)
243 3h4m_A Proteasome-activating n 96.2 0.0032 1.1E-07 53.9 3.8 27 54-80 50-76 (285)
244 3fvq_A Fe(3+) IONS import ATP- 96.2 0.003 1E-07 57.0 3.7 29 52-80 27-55 (359)
245 3b9p_A CG5977-PA, isoform A; A 96.1 0.0031 1.1E-07 54.4 3.6 34 54-90 53-86 (297)
246 1in4_A RUVB, holliday junction 96.1 0.0033 1.1E-07 55.8 3.7 25 56-80 52-76 (334)
247 3e1s_A Exodeoxyribonuclease V, 96.1 0.0065 2.2E-07 58.1 5.9 37 54-90 203-239 (574)
248 2bbs_A Cystic fibrosis transme 96.1 0.0033 1.1E-07 55.0 3.5 29 52-80 61-89 (290)
249 1iy2_A ATP-dependent metallopr 96.1 0.0035 1.2E-07 53.8 3.6 23 58-80 76-98 (278)
250 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0042 1.4E-07 56.0 4.1 26 56-81 25-50 (359)
251 4dey_A Voltage-dependent L-typ 96.1 0.067 2.3E-06 47.6 11.8 101 130-248 220-326 (337)
252 2yyz_A Sugar ABC transporter, 96.1 0.0037 1.3E-07 56.4 3.7 29 52-80 26-54 (359)
253 3te6_A Regulatory protein SIR3 96.1 0.0049 1.7E-07 54.7 4.4 29 53-81 43-71 (318)
254 3rlf_A Maltose/maltodextrin im 96.0 0.0038 1.3E-07 56.8 3.7 29 52-80 26-54 (381)
255 2wsm_A Hydrogenase expression/ 96.0 0.0081 2.8E-07 49.2 5.4 33 54-87 29-61 (221)
256 2gza_A Type IV secretion syste 96.0 0.0028 9.7E-08 57.0 2.8 29 53-81 173-201 (361)
257 2bjv_A PSP operon transcriptio 96.0 0.0051 1.7E-07 52.3 4.3 36 55-90 29-64 (265)
258 2it1_A 362AA long hypothetical 96.0 0.004 1.4E-07 56.3 3.7 29 52-80 26-54 (362)
259 3bh0_A DNAB-like replicative h 96.0 0.0092 3.2E-07 52.5 6.0 39 52-90 65-103 (315)
260 2onk_A Molybdate/tungstate ABC 96.0 0.0042 1.5E-07 52.7 3.7 27 53-80 23-49 (240)
261 1z47_A CYSA, putative ABC-tran 96.0 0.004 1.4E-07 56.1 3.6 29 52-80 38-66 (355)
262 3end_A Light-independent proto 96.0 0.009 3.1E-07 52.0 5.8 38 53-90 39-76 (307)
263 3tqf_A HPR(Ser) kinase; transf 96.0 0.0029 9.8E-08 51.5 2.4 25 53-77 14-38 (181)
264 1v43_A Sugar-binding transport 96.0 0.0042 1.4E-07 56.3 3.7 29 52-80 34-62 (372)
265 1d2n_A N-ethylmaleimide-sensit 96.0 0.0053 1.8E-07 52.4 4.2 35 53-90 62-96 (272)
266 3nh6_A ATP-binding cassette SU 96.0 0.0026 8.9E-08 56.2 2.3 29 52-80 77-105 (306)
267 2orv_A Thymidine kinase; TP4A 96.0 0.0097 3.3E-07 50.4 5.7 39 53-91 17-55 (234)
268 3tui_C Methionine import ATP-b 95.9 0.0045 1.5E-07 56.0 3.7 29 52-80 51-79 (366)
269 3hws_A ATP-dependent CLP prote 95.9 0.007 2.4E-07 54.1 4.9 33 54-89 50-82 (363)
270 1tue_A Replication protein E1; 95.9 0.0044 1.5E-07 51.7 3.3 27 54-80 57-83 (212)
271 1ofh_A ATP-dependent HSL prote 95.9 0.005 1.7E-07 53.0 3.8 27 54-80 49-75 (310)
272 2pjz_A Hypothetical protein ST 95.9 0.0041 1.4E-07 53.6 3.1 27 52-79 28-54 (263)
273 1nlf_A Regulatory protein REPA 95.9 0.0058 2E-07 52.5 4.0 30 52-81 27-56 (279)
274 1g29_1 MALK, maltose transport 95.9 0.0047 1.6E-07 56.0 3.6 28 53-80 27-54 (372)
275 1c9k_A COBU, adenosylcobinamid 95.9 0.0046 1.6E-07 50.4 3.2 30 57-90 1-30 (180)
276 3uk6_A RUVB-like 2; hexameric 95.9 0.0055 1.9E-07 54.4 3.9 27 55-81 70-96 (368)
277 1nij_A Hypothetical protein YJ 95.8 0.0044 1.5E-07 54.7 3.2 27 53-79 2-28 (318)
278 1sxj_C Activator 1 40 kDa subu 95.8 0.0052 1.8E-07 54.3 3.6 25 58-82 49-73 (340)
279 3gd7_A Fusion complex of cysti 95.8 0.0052 1.8E-07 56.0 3.7 29 52-80 44-72 (390)
280 3d31_A Sulfate/molybdate ABC t 95.8 0.0035 1.2E-07 56.4 2.5 29 52-80 23-51 (348)
281 1upt_A ARL1, ADP-ribosylation 95.8 0.0074 2.5E-07 46.8 4.1 26 52-77 4-29 (171)
282 1lw7_A Transcriptional regulat 95.8 0.004 1.4E-07 55.9 2.8 26 55-80 170-195 (365)
283 3kta_A Chromosome segregation 95.8 0.0063 2.2E-07 48.5 3.7 26 54-80 26-51 (182)
284 1pui_A ENGB, probable GTP-bind 95.8 0.0031 1.1E-07 51.2 1.9 26 52-77 23-48 (210)
285 2zts_A Putative uncharacterize 95.7 0.012 4.2E-07 48.8 5.3 38 53-90 28-66 (251)
286 3eie_A Vacuolar protein sortin 95.7 0.0064 2.2E-07 53.5 3.7 27 54-80 50-76 (322)
287 1um8_A ATP-dependent CLP prote 95.7 0.0093 3.2E-07 53.4 4.8 26 55-80 72-97 (376)
288 1sxj_A Activator 1 95 kDa subu 95.7 0.01 3.5E-07 55.8 5.3 36 54-92 76-111 (516)
289 4b4t_K 26S protease regulatory 95.7 0.013 4.3E-07 54.1 5.8 33 55-90 206-238 (428)
290 1xp8_A RECA protein, recombina 95.7 0.013 4.5E-07 52.9 5.8 39 53-91 72-110 (366)
291 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0065 2.2E-07 53.7 3.7 35 54-90 44-78 (322)
292 2gj8_A MNME, tRNA modification 95.7 0.0067 2.3E-07 48.0 3.4 25 54-78 3-27 (172)
293 2yv5_A YJEQ protein; hydrolase 95.7 0.0065 2.2E-07 53.2 3.6 26 53-79 163-188 (302)
294 2hf9_A Probable hydrogenase ni 95.7 0.017 6E-07 47.3 6.0 29 54-82 37-65 (226)
295 1oxx_K GLCV, glucose, ABC tran 95.7 0.0035 1.2E-07 56.4 1.8 29 52-80 28-56 (353)
296 2rcn_A Probable GTPase ENGC; Y 95.7 0.0065 2.2E-07 54.8 3.6 26 54-79 214-239 (358)
297 2z4s_A Chromosomal replication 95.7 0.0095 3.3E-07 55.0 4.8 36 55-90 130-167 (440)
298 3m6a_A ATP-dependent protease 95.6 0.0074 2.5E-07 57.3 4.1 27 54-80 107-133 (543)
299 2r62_A Cell division protease 95.6 0.0036 1.2E-07 53.2 1.7 24 58-81 47-70 (268)
300 2wji_A Ferrous iron transport 95.6 0.0081 2.8E-07 47.0 3.6 23 55-77 3-25 (165)
301 3kjh_A CO dehydrogenase/acetyl 95.6 0.0093 3.2E-07 49.6 4.2 34 57-90 2-35 (254)
302 4b4t_L 26S protease subunit RP 95.6 0.014 4.9E-07 53.9 5.8 34 54-90 214-247 (437)
303 2wjg_A FEOB, ferrous iron tran 95.6 0.0099 3.4E-07 47.1 4.1 24 54-77 6-29 (188)
304 1sxj_D Activator 1 41 kDa subu 95.6 0.0077 2.6E-07 52.9 3.8 23 58-80 61-83 (353)
305 4b4t_M 26S protease regulatory 95.6 0.015 5E-07 53.8 5.8 34 54-90 214-247 (434)
306 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.006 2.1E-07 56.8 3.1 29 52-80 135-163 (460)
307 1oix_A RAS-related protein RAB 95.6 0.008 2.7E-07 48.4 3.5 25 55-79 29-53 (191)
308 2lkc_A Translation initiation 95.6 0.01 3.5E-07 46.4 4.1 25 53-77 6-30 (178)
309 4a1f_A DNAB helicase, replicat 95.6 0.018 6E-07 51.5 6.0 39 52-90 43-81 (338)
310 2r6a_A DNAB helicase, replicat 95.6 0.016 5.5E-07 53.6 5.9 39 52-90 200-239 (454)
311 2oil_A CATX-8, RAS-related pro 95.6 0.0091 3.1E-07 47.7 3.7 25 53-77 23-47 (193)
312 3sop_A Neuronal-specific septi 95.5 0.0081 2.8E-07 51.9 3.6 24 57-80 4-27 (270)
313 3upu_A ATP-dependent DNA helic 95.5 0.016 5.5E-07 53.6 5.7 34 57-90 47-81 (459)
314 3cio_A ETK, tyrosine-protein k 95.5 0.021 7.2E-07 49.9 6.1 38 53-90 102-140 (299)
315 3ozx_A RNAse L inhibitor; ATP 95.5 0.0094 3.2E-07 56.6 4.1 28 52-79 22-49 (538)
316 1pzn_A RAD51, DNA repair and r 95.4 0.0086 2.9E-07 53.6 3.5 28 52-79 128-155 (349)
317 2f9l_A RAB11B, member RAS onco 95.4 0.01 3.4E-07 47.9 3.6 24 55-78 5-28 (199)
318 3ea0_A ATPase, para family; al 95.4 0.02 6.8E-07 47.6 5.6 37 54-90 3-41 (245)
319 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0059 2E-07 54.3 2.4 29 53-81 169-197 (330)
320 1cp2_A CP2, nitrogenase iron p 95.4 0.019 6.6E-07 48.6 5.5 35 56-90 2-36 (269)
321 1u0l_A Probable GTPase ENGC; p 95.4 0.0088 3E-07 52.3 3.4 26 53-78 167-192 (301)
322 2z43_A DNA repair and recombin 95.4 0.016 5.4E-07 51.1 5.1 38 53-90 105-148 (324)
323 3bfv_A CAPA1, CAPB2, membrane 95.4 0.023 8E-07 48.9 6.0 39 53-91 80-119 (271)
324 2qp9_X Vacuolar protein sortin 95.4 0.0097 3.3E-07 53.2 3.6 25 56-80 85-109 (355)
325 2dyk_A GTP-binding protein; GT 95.4 0.011 3.8E-07 45.3 3.5 23 56-78 2-24 (161)
326 1sxj_E Activator 1 40 kDa subu 95.4 0.011 3.7E-07 52.2 3.8 23 58-80 39-61 (354)
327 1byi_A Dethiobiotin synthase; 95.3 0.02 6.8E-07 47.0 5.3 35 56-90 2-37 (224)
328 1z2a_A RAS-related protein RAB 95.3 0.01 3.6E-07 45.7 3.3 25 54-78 4-28 (168)
329 1iqp_A RFCS; clamp loader, ext 95.3 0.013 4.4E-07 50.7 4.2 25 57-81 48-72 (327)
330 2bov_A RAla, RAS-related prote 95.3 0.013 4.4E-07 47.0 4.0 24 54-77 13-36 (206)
331 3bgw_A DNAB-like replicative h 95.3 0.035 1.2E-06 51.3 7.3 39 52-90 194-232 (444)
332 1kao_A RAP2A; GTP-binding prot 95.3 0.013 4.5E-07 44.9 3.8 23 55-77 3-25 (167)
333 2ged_A SR-beta, signal recogni 95.3 0.013 4.5E-07 46.6 3.9 25 53-77 46-70 (193)
334 2ce2_X GTPase HRAS; signaling 95.3 0.011 3.7E-07 45.3 3.3 23 56-78 4-26 (166)
335 1w4r_A Thymidine kinase; type 95.3 0.026 8.9E-07 46.5 5.7 38 53-90 18-55 (195)
336 1tf7_A KAIC; homohexamer, hexa 95.3 0.021 7.3E-07 53.7 5.9 39 52-90 278-316 (525)
337 2c9o_A RUVB-like 1; hexameric 95.3 0.011 3.9E-07 54.6 3.9 28 54-81 62-89 (456)
338 1u8z_A RAS-related protein RAL 95.3 0.012 3.9E-07 45.3 3.3 23 55-77 4-26 (168)
339 2afh_E Nitrogenase iron protei 95.2 0.023 7.9E-07 48.8 5.6 35 56-90 3-37 (289)
340 3fwy_A Light-independent proto 95.2 0.025 8.5E-07 49.9 5.8 38 53-90 46-83 (314)
341 1g41_A Heat shock protein HSLU 95.2 0.0093 3.2E-07 55.3 3.1 27 55-81 50-76 (444)
342 1v5w_A DMC1, meiotic recombina 95.2 0.021 7.2E-07 50.8 5.3 39 52-90 119-163 (343)
343 1t9h_A YLOQ, probable GTPase E 95.2 0.0041 1.4E-07 54.9 0.6 28 52-79 170-197 (307)
344 3d8b_A Fidgetin-like protein 1 95.2 0.012 4.1E-07 52.6 3.6 34 54-90 116-149 (357)
345 1zd9_A ADP-ribosylation factor 95.2 0.013 4.5E-07 46.7 3.6 25 53-77 20-44 (188)
346 4b4t_J 26S protease regulatory 95.2 0.0099 3.4E-07 54.4 3.1 33 55-90 182-214 (405)
347 2fn4_A P23, RAS-related protei 95.2 0.016 5.5E-07 45.2 4.0 25 54-78 8-32 (181)
348 3pfi_A Holliday junction ATP-d 95.2 0.011 3.9E-07 51.8 3.4 34 55-91 55-88 (338)
349 1jr3_A DNA polymerase III subu 95.2 0.014 4.7E-07 51.7 4.0 27 55-81 38-64 (373)
350 1w5s_A Origin recognition comp 95.2 0.014 4.9E-07 52.2 4.1 37 54-90 49-93 (412)
351 4b4t_H 26S protease regulatory 95.2 0.021 7.3E-07 53.1 5.3 34 54-90 242-275 (467)
352 2qag_B Septin-6, protein NEDD5 95.2 0.011 3.9E-07 54.4 3.4 27 52-78 37-65 (427)
353 3zq6_A Putative arsenical pump 95.2 0.032 1.1E-06 49.2 6.3 35 56-90 15-49 (324)
354 2erx_A GTP-binding protein DI- 95.1 0.014 4.7E-07 45.1 3.5 23 55-77 3-25 (172)
355 2zej_A Dardarin, leucine-rich 95.1 0.011 3.8E-07 47.0 3.0 22 56-77 3-24 (184)
356 3clv_A RAB5 protein, putative; 95.1 0.019 6.6E-07 45.5 4.4 25 54-78 6-30 (208)
357 2chq_A Replication factor C sm 95.1 0.015 5.3E-07 50.0 4.1 24 58-81 41-64 (319)
358 3b5x_A Lipid A export ATP-bind 95.1 0.012 4E-07 56.3 3.5 29 52-80 366-394 (582)
359 1ek0_A Protein (GTP-binding pr 95.1 0.013 4.6E-07 45.1 3.3 22 56-77 4-25 (170)
360 3b60_A Lipid A export ATP-bind 95.1 0.012 4E-07 56.3 3.5 29 52-80 366-394 (582)
361 2oap_1 GSPE-2, type II secreti 95.1 0.01 3.4E-07 56.0 2.9 29 53-81 258-286 (511)
362 1tq4_A IIGP1, interferon-induc 95.1 0.013 4.3E-07 53.9 3.5 26 54-79 68-93 (413)
363 3q72_A GTP-binding protein RAD 95.1 0.012 4.1E-07 45.4 2.9 21 56-76 3-23 (166)
364 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.014 4.7E-07 45.6 3.3 23 55-77 7-29 (177)
365 1ky3_A GTP-binding protein YPT 95.1 0.014 4.7E-07 45.6 3.3 24 54-77 7-30 (182)
366 2nzj_A GTP-binding protein REM 95.0 0.013 4.5E-07 45.5 3.1 23 55-77 4-26 (175)
367 1g16_A RAS-related protein SEC 95.0 0.014 4.9E-07 45.0 3.3 22 56-77 4-25 (170)
368 2q6t_A DNAB replication FORK h 95.0 0.03 1E-06 51.6 5.9 39 52-90 197-236 (444)
369 3q85_A GTP-binding protein REM 95.0 0.014 4.8E-07 45.2 3.2 20 57-76 4-23 (169)
370 3la6_A Tyrosine-protein kinase 95.0 0.038 1.3E-06 48.0 6.2 39 53-91 90-129 (286)
371 1g3q_A MIND ATPase, cell divis 95.0 0.033 1.1E-06 46.0 5.7 37 55-91 2-39 (237)
372 1z0j_A RAB-22, RAS-related pro 95.0 0.015 5.2E-07 44.9 3.3 25 54-78 5-29 (170)
373 3pqc_A Probable GTP-binding pr 95.0 0.02 6.8E-07 45.3 4.1 25 54-78 22-46 (195)
374 1nrj_B SR-beta, signal recogni 95.0 0.018 6.2E-07 46.9 3.9 26 54-79 11-36 (218)
375 1z08_A RAS-related protein RAB 95.0 0.015 5.2E-07 44.9 3.3 24 54-77 5-28 (170)
376 4gzl_A RAS-related C3 botulinu 95.0 0.016 5.6E-07 46.9 3.6 25 53-77 28-52 (204)
377 1c1y_A RAS-related protein RAP 95.0 0.019 6.5E-07 44.1 3.8 23 55-77 3-25 (167)
378 1yqt_A RNAse L inhibitor; ATP- 95.0 0.015 5E-07 55.2 3.7 28 52-79 44-71 (538)
379 2hxs_A RAB-26, RAS-related pro 94.9 0.02 6.7E-07 44.7 3.9 24 54-77 5-28 (178)
380 3c5c_A RAS-like protein 12; GD 94.9 0.018 6E-07 46.0 3.6 25 53-77 19-43 (187)
381 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.016 5.4E-07 51.6 3.5 25 54-78 122-146 (331)
382 1r2q_A RAS-related protein RAB 94.9 0.017 5.7E-07 44.5 3.3 23 55-77 6-28 (170)
383 3lda_A DNA repair protein RAD5 94.9 0.015 5.2E-07 53.1 3.5 26 53-78 176-201 (400)
384 3qxc_A Dethiobiotin synthetase 94.9 0.036 1.2E-06 47.1 5.6 38 53-90 19-57 (242)
385 4ag6_A VIRB4 ATPase, type IV s 94.9 0.03 1E-06 50.5 5.4 36 55-90 35-70 (392)
386 1hqc_A RUVB; extended AAA-ATPa 94.9 0.012 4.1E-07 51.1 2.6 35 55-92 38-72 (324)
387 3bc1_A RAS-related protein RAB 94.9 0.017 5.8E-07 45.5 3.3 24 54-77 10-33 (195)
388 4dzz_A Plasmid partitioning pr 94.9 0.034 1.2E-06 44.8 5.2 36 56-91 2-38 (206)
389 3con_A GTPase NRAS; structural 94.9 0.018 6.1E-07 45.7 3.4 25 54-78 20-44 (190)
390 3tw8_B RAS-related protein RAB 94.8 0.015 5.1E-07 45.4 2.9 24 54-77 8-31 (181)
391 1sxj_B Activator 1 37 kDa subu 94.8 0.018 6.1E-07 49.7 3.7 24 58-81 45-68 (323)
392 4dsu_A GTPase KRAS, isoform 2B 94.8 0.018 6.2E-07 45.3 3.4 23 55-77 4-26 (189)
393 3pvs_A Replication-associated 94.8 0.014 4.8E-07 54.0 3.1 25 56-80 51-75 (447)
394 1r8s_A ADP-ribosylation factor 94.8 0.02 6.7E-07 44.1 3.5 21 57-77 2-22 (164)
395 2r44_A Uncharacterized protein 94.8 0.0089 3.1E-07 52.4 1.6 27 55-81 46-72 (331)
396 1svi_A GTP-binding protein YSX 94.8 0.019 6.6E-07 45.6 3.5 24 54-77 22-45 (195)
397 2yl4_A ATP-binding cassette SU 94.8 0.013 4.3E-07 56.2 2.8 29 52-80 367-395 (595)
398 3co5_A Putative two-component 94.8 0.0086 2.9E-07 46.2 1.3 24 56-79 28-51 (143)
399 1w36_D RECD, exodeoxyribonucle 94.8 0.032 1.1E-06 53.6 5.5 36 54-89 163-202 (608)
400 1moz_A ARL1, ADP-ribosylation 94.8 0.014 4.7E-07 45.9 2.6 24 53-76 16-39 (183)
401 2ph1_A Nucleotide-binding prot 94.8 0.044 1.5E-06 46.4 5.9 38 54-91 17-55 (262)
402 2fg5_A RAB-22B, RAS-related pr 94.8 0.019 6.4E-07 45.9 3.4 25 53-77 21-45 (192)
403 1m7b_A RND3/RHOE small GTP-bin 94.7 0.021 7.2E-07 45.2 3.6 25 54-78 6-30 (184)
404 2vf7_A UVRA2, excinuclease ABC 94.7 0.012 4.1E-07 58.8 2.6 22 52-73 33-54 (842)
405 1ojl_A Transcriptional regulat 94.7 0.018 6.2E-07 50.4 3.5 37 54-90 24-60 (304)
406 1z0f_A RAB14, member RAS oncog 94.7 0.019 6.6E-07 44.6 3.3 25 54-78 14-38 (179)
407 2y8e_A RAB-protein 6, GH09086P 94.7 0.018 6.1E-07 44.8 3.1 23 55-77 14-36 (179)
408 4b4t_I 26S protease regulatory 94.7 0.019 6.4E-07 53.0 3.6 33 55-90 216-248 (437)
409 1ega_A Protein (GTP-binding pr 94.7 0.018 6.1E-07 50.3 3.4 25 53-77 6-30 (301)
410 1m2o_B GTP-binding protein SAR 94.7 0.021 7.1E-07 45.8 3.5 24 54-77 22-45 (190)
411 2a9k_A RAS-related protein RAL 94.7 0.02 6.8E-07 44.9 3.3 24 54-77 17-40 (187)
412 2cxx_A Probable GTP-binding pr 94.7 0.017 5.9E-07 45.5 3.0 21 57-77 3-23 (190)
413 3qf4_B Uncharacterized ABC tra 94.7 0.014 4.9E-07 55.9 2.9 29 52-80 378-406 (598)
414 3lxx_A GTPase IMAP family memb 94.7 0.02 6.7E-07 47.8 3.5 24 54-77 28-51 (239)
415 2oze_A ORF delta'; para, walke 94.7 0.03 1E-06 48.3 4.7 37 54-90 33-72 (298)
416 2woo_A ATPase GET3; tail-ancho 94.7 0.045 1.5E-06 48.4 5.9 36 55-90 19-54 (329)
417 1fzq_A ADP-ribosylation factor 94.7 0.022 7.7E-07 45.1 3.6 24 54-77 15-38 (181)
418 3oes_A GTPase rhebl1; small GT 94.7 0.022 7.5E-07 45.9 3.6 26 53-78 22-47 (201)
419 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.022 7.5E-07 44.5 3.4 26 55-80 23-48 (149)
420 3ug7_A Arsenical pump-driving 94.6 0.046 1.6E-06 48.8 5.9 37 54-90 25-61 (349)
421 2bme_A RAB4A, RAS-related prot 94.6 0.02 7E-07 45.0 3.3 24 54-77 9-32 (186)
422 3fgn_A Dethiobiotin synthetase 94.6 0.053 1.8E-06 46.3 6.1 36 55-90 26-62 (251)
423 2g6b_A RAS-related protein RAB 94.6 0.022 7.4E-07 44.6 3.3 24 54-77 9-32 (180)
424 2zan_A Vacuolar protein sortin 94.6 0.019 6.6E-07 52.9 3.5 34 55-90 167-200 (444)
425 1ksh_A ARF-like protein 2; sma 94.6 0.022 7.5E-07 45.0 3.4 24 54-77 17-40 (186)
426 1g8p_A Magnesium-chelatase 38 94.6 0.0098 3.4E-07 52.2 1.4 23 58-80 48-70 (350)
427 3u61_B DNA polymerase accessor 94.6 0.021 7.2E-07 49.8 3.5 35 54-91 47-81 (324)
428 4a82_A Cystic fibrosis transme 94.6 0.012 4E-07 56.2 2.0 29 52-80 364-392 (578)
429 3k9g_A PF-32 protein; ssgcid, 94.6 0.039 1.3E-06 46.7 5.1 38 53-91 25-63 (267)
430 3ozx_A RNAse L inhibitor; ATP 94.6 0.017 5.8E-07 54.8 3.0 28 53-80 292-319 (538)
431 2dhr_A FTSH; AAA+ protein, hex 94.6 0.024 8.1E-07 53.3 4.0 23 58-80 67-89 (499)
432 3iqw_A Tail-anchored protein t 94.6 0.048 1.6E-06 48.5 5.8 37 54-90 15-51 (334)
433 3k53_A Ferrous iron transport 94.5 0.023 7.8E-07 48.5 3.6 24 55-78 3-26 (271)
434 2obl_A ESCN; ATPase, hydrolase 94.5 0.024 8.3E-07 50.7 3.9 30 52-81 68-97 (347)
435 2a5j_A RAS-related protein RAB 94.5 0.033 1.1E-06 44.3 4.4 25 53-77 19-43 (191)
436 1zj6_A ADP-ribosylation factor 94.5 0.026 8.9E-07 44.7 3.7 24 54-77 15-38 (187)
437 1q57_A DNA primase/helicase; d 94.5 0.052 1.8E-06 50.6 6.3 39 52-90 239-278 (503)
438 4b3f_X DNA-binding protein smu 94.5 0.041 1.4E-06 53.1 5.7 37 55-91 205-241 (646)
439 2h17_A ADP-ribosylation factor 94.5 0.021 7E-07 45.2 3.0 25 53-77 19-43 (181)
440 3io5_A Recombination and repai 94.5 0.049 1.7E-06 48.4 5.6 38 53-91 27-66 (333)
441 3vfd_A Spastin; ATPase, microt 94.5 0.023 7.9E-07 51.2 3.7 33 55-90 148-180 (389)
442 1yqt_A RNAse L inhibitor; ATP- 94.5 0.021 7.3E-07 54.1 3.6 28 53-80 310-337 (538)
443 2efe_B Small GTP-binding prote 94.5 0.025 8.4E-07 44.3 3.4 24 54-77 11-34 (181)
444 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.025 8.6E-07 44.3 3.4 24 54-77 4-27 (186)
445 3t5g_A GTP-binding protein RHE 94.5 0.021 7.2E-07 44.8 3.0 24 54-77 5-28 (181)
446 2hup_A RAS-related protein RAB 94.5 0.025 8.6E-07 45.7 3.5 24 54-77 28-51 (201)
447 2ce7_A Cell division protein F 94.5 0.029 1E-06 52.4 4.3 23 58-80 52-74 (476)
448 3kkq_A RAS-related protein M-R 94.5 0.033 1.1E-06 43.8 4.1 25 54-78 17-41 (183)
449 1ihu_A Arsenical pump-driving 94.4 0.048 1.7E-06 51.9 5.9 37 54-90 7-43 (589)
450 3tkl_A RAS-related protein RAB 94.4 0.025 8.4E-07 44.9 3.3 23 55-77 16-38 (196)
451 3bk7_A ABC transporter ATP-bin 94.4 0.022 7.6E-07 54.8 3.6 28 53-80 380-407 (607)
452 3bwd_D RAC-like GTP-binding pr 94.4 0.03 1E-06 43.8 3.8 24 54-77 7-30 (182)
453 3ihw_A Centg3; RAS, centaurin, 94.4 0.032 1.1E-06 44.4 4.0 24 54-77 19-42 (184)
454 3bk7_A ABC transporter ATP-bin 94.4 0.02 6.9E-07 55.1 3.2 28 52-79 114-141 (607)
455 3qf4_A ABC transporter, ATP-bi 94.4 0.016 5.4E-07 55.5 2.5 29 52-80 366-394 (587)
456 3dz8_A RAS-related protein RAB 94.4 0.026 9E-07 44.9 3.5 26 54-79 22-47 (191)
457 1tf7_A KAIC; homohexamer, hexa 94.4 0.03 1E-06 52.7 4.4 28 53-80 37-66 (525)
458 3pxg_A Negative regulator of g 94.4 0.032 1.1E-06 51.8 4.4 26 56-81 202-227 (468)
459 1vg8_A RAS-related protein RAB 94.4 0.029 9.9E-07 45.0 3.6 25 54-78 7-31 (207)
460 3q9l_A Septum site-determining 94.4 0.05 1.7E-06 45.5 5.3 36 55-90 2-38 (260)
461 2j0v_A RAC-like GTP-binding pr 94.4 0.038 1.3E-06 44.7 4.3 24 54-77 8-31 (212)
462 2gf0_A GTP-binding protein DI- 94.3 0.032 1.1E-06 44.4 3.8 24 54-77 7-30 (199)
463 1f6b_A SAR1; gtpases, N-termin 94.3 0.024 8.2E-07 45.8 3.1 24 54-77 24-47 (198)
464 2gf9_A RAS-related protein RAB 94.3 0.027 9.2E-07 44.7 3.3 23 55-77 22-44 (189)
465 3pxi_A Negative regulator of g 94.3 0.041 1.4E-06 54.0 5.3 34 57-90 523-556 (758)
466 2b6h_A ADP-ribosylation factor 94.3 0.029 9.8E-07 45.0 3.5 24 53-76 27-50 (192)
467 2ygr_A Uvrabc system protein A 94.3 0.017 5.8E-07 58.5 2.5 21 52-72 43-63 (993)
468 2dpy_A FLII, flagellum-specifi 94.3 0.028 9.6E-07 51.9 3.9 31 51-81 153-183 (438)
469 1ni3_A YCHF GTPase, YCHF GTP-b 94.3 0.028 9.6E-07 51.2 3.8 26 52-77 17-42 (392)
470 1wcv_1 SOJ, segregation protei 94.3 0.035 1.2E-06 46.9 4.2 37 54-90 5-42 (257)
471 2qen_A Walker-type ATPase; unk 94.3 0.03 1E-06 48.7 3.8 25 55-79 31-55 (350)
472 2iwr_A Centaurin gamma 1; ANK 94.3 0.027 9.3E-07 44.0 3.2 24 54-77 6-29 (178)
473 3of5_A Dethiobiotin synthetase 94.3 0.06 2E-06 45.1 5.5 35 56-90 5-40 (228)
474 2atv_A RERG, RAS-like estrogen 94.3 0.032 1.1E-06 44.6 3.7 24 54-77 27-50 (196)
475 1x3s_A RAS-related protein RAB 94.3 0.028 9.6E-07 44.5 3.3 25 54-78 14-38 (195)
476 2r6f_A Excinuclease ABC subuni 94.2 0.018 6.1E-07 58.1 2.5 21 52-72 41-61 (972)
477 3fkq_A NTRC-like two-domain pr 94.2 0.052 1.8E-06 48.7 5.4 38 53-90 141-179 (373)
478 2fna_A Conserved hypothetical 94.2 0.032 1.1E-06 48.6 3.9 26 56-81 31-56 (357)
479 1zbd_A Rabphilin-3A; G protein 94.2 0.027 9.4E-07 45.2 3.2 23 55-77 8-30 (203)
480 2fh5_B SR-beta, signal recogni 94.2 0.032 1.1E-06 45.2 3.6 25 54-78 6-30 (214)
481 1z06_A RAS-related protein RAB 94.2 0.033 1.1E-06 44.2 3.6 24 54-77 19-42 (189)
482 2i1q_A DNA repair and recombin 94.2 0.029 1E-06 49.1 3.5 26 53-78 96-121 (322)
483 2p5s_A RAS and EF-hand domain 94.2 0.033 1.1E-06 44.7 3.6 24 54-77 27-50 (199)
484 3qf7_A RAD50; ABC-ATPase, ATPa 94.2 0.042 1.4E-06 49.3 4.6 26 54-80 23-48 (365)
485 2xj4_A MIPZ; replication, cell 94.2 0.056 1.9E-06 46.5 5.3 37 55-91 4-41 (286)
486 2gco_A H9, RHO-related GTP-bin 94.2 0.039 1.3E-06 44.4 4.0 24 54-77 24-47 (201)
487 3pih_A Uvrabc system protein A 94.2 0.016 5.5E-07 58.3 2.0 21 52-72 21-41 (916)
488 2bcg_Y Protein YP2, GTP-bindin 94.2 0.03 1E-06 45.1 3.3 24 54-77 7-30 (206)
489 3cph_A RAS-related protein SEC 94.1 0.034 1.2E-06 44.8 3.6 25 53-77 18-42 (213)
490 3j16_B RLI1P; ribosome recycli 94.1 0.03 1E-06 54.0 3.7 27 54-80 377-403 (608)
491 2xtp_A GTPase IMAP family memb 94.1 0.031 1.1E-06 47.1 3.5 24 54-77 21-44 (260)
492 3cbq_A GTP-binding protein REM 94.1 0.023 7.7E-07 45.9 2.5 22 55-76 23-44 (195)
493 3t1o_A Gliding protein MGLA; G 94.1 0.032 1.1E-06 44.1 3.3 26 55-80 14-39 (198)
494 3euj_A Chromosome partition pr 94.1 0.028 9.7E-07 52.6 3.4 27 53-80 28-54 (483)
495 1hyq_A MIND, cell division inh 94.1 0.073 2.5E-06 44.8 5.7 36 55-90 2-38 (263)
496 2il1_A RAB12; G-protein, GDP, 94.0 0.029 9.9E-07 44.9 3.0 23 55-77 26-48 (192)
497 2ew1_A RAS-related protein RAB 94.0 0.032 1.1E-06 45.3 3.3 25 54-78 25-49 (201)
498 2o52_A RAS-related protein RAB 94.0 0.03 1E-06 45.1 3.1 24 54-77 24-47 (200)
499 2fv8_A H6, RHO-related GTP-bin 94.0 0.032 1.1E-06 45.2 3.3 24 54-77 24-47 (207)
500 1gwn_A RHO-related GTP-binding 94.0 0.032 1.1E-06 45.4 3.3 25 54-78 27-51 (205)
No 1
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=100.00 E-value=5.9e-40 Score=278.04 Aligned_cols=190 Identities=28% Similarity=0.411 Sum_probs=167.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMME 133 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~ 133 (259)
|++|+|||+||||||||++.|+++|. .|+.++.+++|+ ++++|+.|++++.++..+++.++.++|+++|+++. ..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~-~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~ 79 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 79 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESST-TCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCC-CChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999996 589999999998 78999999999988888999999999999999986 6789
Q ss_pred HHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hHHH
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEF 204 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~~~ 204 (259)
|++.+|.+||+|||++|+++||+ ++|++.+|+..++ ...+.||++||||+||+++.+|+..|+ +++| ..+|
T Consensus 80 p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f 159 (205)
T 4hlc_A 80 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKF 159 (205)
T ss_dssp HHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHH
T ss_pred HHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHH
Confidence 99999999999999999999987 5789989887765 356899999999999999999986653 5566 4689
Q ss_pred HHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 205 QRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 205 ~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
++++++.|.+++. .+|++||+++|+|+|.++|.+.|.++|+.
T Consensus 160 ~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 160 HEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999998753 36999999999999999999999988753
No 2
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=100.00 E-value=5.5e-40 Score=280.19 Aligned_cols=201 Identities=44% Similarity=0.815 Sum_probs=180.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC-CCCHHHHHHHHHHhHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-HLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~-~~~~~~~~ll~~a~r~~~~~ 130 (259)
|.+|++|+|+|+|||||||+++.|+++|.. .+..+++|..++++|+.|++++.++. .+++.+++++|+++|+++.+
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999975 45677899768999999999988764 58899999999999998777
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCC---CCHHHHHhhhccCCCCCEEEEE-eCCHHHHHhhcCCCCCCcchHHHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKG---IDIEWCKAPEIGLLAPDSVLYL-DIPPEKAAERGGYGGERYEHLEFQR 206 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~g---l~~~~~~~~~~~~~~PdlvI~L-d~~~e~~~~R~~~R~d~~e~~~~~~ 206 (259)
.|+|++++|.+||+|||++|+++|++++| .+.+|+..+....+.||++||| |+||+++.+|+..+.+++|..+|++
T Consensus 79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~ 158 (216)
T 3tmk_A 79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQE 158 (216)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHH
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHH
Confidence 89999999999999999999999998765 4578888887788999999999 9999999999987778999999999
Q ss_pred HHHHHHHhhhC-------CCeEEEc-CCCCHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 024986 207 KVAQCYQMLRD-------SSWKIID-ACQSIEDVEKQLKEIVLDQVTACKKGKPFSL 255 (259)
Q Consensus 207 rv~~~y~~l~~-------~~~~vID-a~~s~eev~~~I~~~i~~~l~~~~~~~~~~~ 255 (259)
++++.|.+++. .+|++|| +++|+|+|.++|.+.|.+.+.....++|++.
T Consensus 159 rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~~~~~~~~~~ 215 (216)
T 3tmk_A 159 KVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFSF 215 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHSCCCTTCCCB
T ss_pred HHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99999998742 4799999 8999999999999999999998888888864
No 3
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=100.00 E-value=1.7e-38 Score=270.60 Aligned_cols=194 Identities=26% Similarity=0.393 Sum_probs=173.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC--CCCHHHHHHHHHHhHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS--HLDDHTIHLLFSANRWEKR 129 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~--~~~~~~~~ll~~a~r~~~~ 129 (259)
+.+|++|+|+|+|||||||+++.|+++|...|++++.+++|+ ++++|+.|++++.++. .+++.++.++|+++|+++.
T Consensus 3 ~m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~-~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~ 81 (213)
T 4edh_A 3 AMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL 81 (213)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC-SSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC-CCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999997 7899999999988763 5889999999999999986
Q ss_pred -HHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCcch-
Q 024986 130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERYEH- 201 (259)
Q Consensus 130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e~- 201 (259)
..++|++++|.+||+|||++|+++|+++ +|++.+|+..++ ...+.||++||||+||+++.+|+..|+ |++|.
T Consensus 82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~ 161 (213)
T 4edh_A 82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQE 161 (213)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTS
T ss_pred HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCccccc
Confidence 6789999999999999999999999984 788989887765 357899999999999999999998774 67774
Q ss_pred -HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 202 -LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 202 -~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
.+|++++.+.|..+.+ ..|++||+++|+|+|.++|.+.|.+.+..
T Consensus 162 ~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 162 DRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER 210 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 7999999999998753 36999999999999999999999988864
No 4
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=100.00 E-value=9.8e-39 Score=272.02 Aligned_cols=193 Identities=30% Similarity=0.434 Sum_probs=171.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCC-eEEEEecCCCCChHHHHHHHHHhCC-----CCCCHHHHHHHHHHhHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWRFPDRTTSVGQMISAYLSNQ-----SHLDDHTIHLLFSANRWE 127 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~-~v~~~~~p~~~~~~g~~ir~~l~~~-----~~~~~~~~~ll~~a~r~~ 127 (259)
+|++|+|||+||||||||++.|+++|...|+ .++.+++|+ ++++|+.|++++.++ ..+++.++.++|+++|++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~ 80 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ 80 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC-CCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence 6899999999999999999999999999998 788889997 789999999998743 468899999999999999
Q ss_pred HH-HHHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCcc
Q 024986 128 KR-SMMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERYE 200 (259)
Q Consensus 128 ~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e 200 (259)
+. ..|+|++++|.+||+|||++|+++||+ .+|++.+|+..++ ...+.||++||||+||+++.+|+..|+ +++|
T Consensus 81 ~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E 160 (213)
T 4tmk_A 81 LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE 160 (213)
T ss_dssp HHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTT
T ss_pred HHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchh
Confidence 87 578999999999999999999999998 4789999987665 457899999999999999999987653 5776
Q ss_pred --hHHHHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Q 024986 201 --HLEFQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 201 --~~~~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~~~l~~~ 247 (259)
..+|++++.+.|..+.+ .++++||+++|+|+|.++|.+.|.+++...
T Consensus 161 ~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~~ 211 (213)
T 4tmk_A 161 QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKEL 211 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence 47999999999998754 579999999999999999999999998654
No 5
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-38 Score=268.46 Aligned_cols=186 Identities=28% Similarity=0.431 Sum_probs=163.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
++|+|||+||||||||++.|+++|...|++++.+++|+ +++.++.+++++... .+++.+..++|+++|+++...+.|+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~-~t~~~~~ir~~l~~~-~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLEE-EVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CCcHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998 789999999987754 5778888999999998887889999
Q ss_pred HhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 136 LKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
+.+|.+||+|||++|+++|++ ++|.+.+|+..++ ...+.||++||||+||+++.+|...+ +++|..+|++++++.
T Consensus 79 L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~-dr~e~~ef~~rv~~~ 157 (197)
T 3hjn_A 79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL-NRFEKREFLERVREG 157 (197)
T ss_dssp HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC----CTTCCHHHHHHHHHH
T ss_pred HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc-CccccHHHHHHHHHH
Confidence 999999999999999999997 4788888887654 45678999999999999999998764 778888999999999
Q ss_pred HHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 212 YQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 212 y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
|.+++. .+|++||+++|+|+|.++|.+.|.+.+
T Consensus 158 y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 158 YLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 999853 369999999999999999999987654
No 6
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=8e-38 Score=268.72 Aligned_cols=189 Identities=28% Similarity=0.440 Sum_probs=163.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC----CCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL----GHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE 127 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~----g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~ 127 (259)
+.+|++|+|+|+|||||||+++.|+++|... |++++.+++|+ ++++|+.|++++.++ .+++.++.++|+++|++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~-~t~~g~~ir~~l~~~-~~~~~~~~llf~a~R~~ 99 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLNQ-PMDLETEALLMFAGRRE 99 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSS-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCC-CChHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999988 99999899996 789999999998876 68899999999999999
Q ss_pred HH-HHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCcc
Q 024986 128 KR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERYE 200 (259)
Q Consensus 128 ~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~e 200 (259)
+. ..++|++++|.+||+|||++|+++|++. +|++.+|+..++ ...+.||++||||+||+++.+|+..|+ +++|
T Consensus 100 ~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E 179 (227)
T 3v9p_A 100 HLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFE 179 (227)
T ss_dssp HHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---C
T ss_pred HHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchh
Confidence 86 5789999999999999999999999974 788989987765 356899999999999999999998874 6787
Q ss_pred h--HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 201 H--LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 201 ~--~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
. .+|++++.+.|..+.+ .+|++||+++++|+|.++|.+.|.+
T Consensus 180 ~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 180 SESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 4 6999999999998753 3699999999999999999998864
No 7
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=100.00 E-value=3.9e-37 Score=265.89 Aligned_cols=195 Identities=27% Similarity=0.395 Sum_probs=167.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe-EEEEecCCCCChHHHHHHHHHhC-C--CCCCHHHHHHHHHHhHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS-VELWRFPDRTTSVGQMISAYLSN-Q--SHLDDHTIHLLFSANRW 126 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~-v~~~~~p~~~~~~g~~ir~~l~~-~--~~~~~~~~~ll~~a~r~ 126 (259)
++.+|++|+|+|+|||||||+++.|+++|...|++ +..+++|. ++++|+.|++++.. + ..+++.++.++|+++|+
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~ 101 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GTLLAEKLRALVKEEHPGEELQDITELLLVYAARV 101 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC-CCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999 78889997 78999999999863 2 35889999999999999
Q ss_pred HHH-HHHHHHHhcCCeEEEcccccchhhhhcC-CCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC--CCc
Q 024986 127 EKR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG--ERY 199 (259)
Q Consensus 127 ~~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~~ 199 (259)
++. ..++|++++|.+||+|||++|+++|+++ +|++.+|+..++ ...+.||++||||+||+++.+|+..|+ +++
T Consensus 102 ~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~ 181 (236)
T 3lv8_A 102 QLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI 181 (236)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred HHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence 987 5789999999999999999999999986 789888887654 356899999999999999999998764 577
Q ss_pred ch--HHHHHHHHHHHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 200 EH--LEFQRKVAQCYQMLRD--SSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 200 e~--~~~~~rv~~~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
|. .+|++++.+.|.++.+ +.+++||+++|+|+|.++|.+.|.+.+.+
T Consensus 182 E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~ 232 (236)
T 3lv8_A 182 EKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ 232 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 74 7999999999998763 45999999999999999999999998865
No 8
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=100.00 E-value=2.3e-37 Score=265.12 Aligned_cols=195 Identities=23% Similarity=0.352 Sum_probs=156.5
Q ss_pred ccCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEE-EecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024986 47 RIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVEL-WRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN 124 (259)
Q Consensus 47 ~~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~-~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~ 124 (259)
++.....+|++|+|+|++||||||+++.|+++|.. .|+++.. +++|+ ++++|+.|++++.++..+++.++.++|+++
T Consensus 13 ~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~-~t~~g~~ir~~l~~~~~~~~~~e~llf~a~ 91 (223)
T 3ld9_A 13 EAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GTLLNESVRNLLFKAQGLDSLSELLFFIAM 91 (223)
T ss_dssp ------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC-SSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC-CChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34445568999999999999999999999999998 8999887 89998 789999999998865458899999999999
Q ss_pred HHHHHH-HHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCCc
Q 024986 125 RWEKRS-MMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGERY 199 (259)
Q Consensus 125 r~~~~~-~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~ 199 (259)
|+++.. .++|++.+|.+||+|||++|+++|++ .+|++.+|+..++ .. +.||++||||+||+++.+|+ . .+++
T Consensus 92 R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~-rdr~ 168 (223)
T 3ld9_A 92 RREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-C-KNGY 168 (223)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC---------------
T ss_pred HHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-c-cCcc
Confidence 999874 58999999999999999999999997 4788888987764 34 79999999999999999999 3 4677
Q ss_pred ch--HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 200 EH--LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 200 e~--~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
|. .+|++++++.|.++.+ .++++||+++|+|+| ++|.+.|.+.+..
T Consensus 169 E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~lg~ 219 (223)
T 3ld9_A 169 EFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVIKV 219 (223)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHHhh
Confidence 75 7999999999998753 379999999999999 9999999988754
No 9
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=100.00 E-value=1.4e-32 Score=236.25 Aligned_cols=192 Identities=27% Similarity=0.400 Sum_probs=162.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-H
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-S 130 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~ 130 (259)
+.+|++|+|+|+|||||||+++.|++.|.. |+.++..++|. +++.|+.+++++.++..+++.+..++|+++|+++. .
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~-~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~ 100 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 100 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT-TCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC-CCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999998 88888888887 67899999999887655888889899999998764 4
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhc-CCCCCHHHH---HhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--h
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWC---KAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--H 201 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~---~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~ 201 (259)
.+.+++++|.+||+|||++|+++|++ .++++.+++ ..+....+.||++|||++|++++.+|+..|+ ++++ .
T Consensus 101 ~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~ 180 (229)
T 4eaq_A 101 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 180 (229)
T ss_dssp CCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHH
T ss_pred HHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhh
Confidence 56788999999999999999999997 467776644 3444566899999999999999999997663 5564 4
Q ss_pred HHHHHHHHHHHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 024986 202 LEFQRKVAQCYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 202 ~~~~~rv~~~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~ 245 (259)
.++++++.+.|.++.+ ..+++||+++++|+|+++|.+.|.+.+.
T Consensus 181 ~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 181 LKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 6899999999998864 3689999999999999999999998774
No 10
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=100.00 E-value=1.7e-31 Score=223.21 Aligned_cols=199 Identities=39% Similarity=0.713 Sum_probs=165.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
++|++|+|+|++||||||+++.|+++| .|++++.+.+|.++++.|+.+++++.+++.+.+....++|.++|+++...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i 79 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFI 79 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988 356777778887567889999999876666777777778888887665667
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC-CCCcchHHHHHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG-GERYEHLEFQRKVAQC 211 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R-~d~~e~~~~~~rv~~~ 211 (259)
.+.+.+|.+||+|||+++.++|+.+.|++.+|+..+....+.||++|||++|++++.+ .| .++++..++++++...
T Consensus 80 ~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~~e~~~~~~rl~~~ 156 (204)
T 2v54_A 80 QEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEIYEDVTFQQKVLQE 156 (204)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSSTTCCSHHHHHHHHH
T ss_pred HHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcccccHHHHHHHHHHH
Confidence 7888889999999999999999876678888887766555789999999999999987 23 2455555788999888
Q ss_pred HHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 024986 212 YQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258 (259)
Q Consensus 212 y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~ 258 (259)
|.++.. ..+++||+++++++++++|.+.+...+... ++||.+||+
T Consensus 157 y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~--~~~~~~~~~ 204 (204)
T 2v54_A 157 YKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTV--TGPVGQLWM 204 (204)
T ss_dssp HHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHC--CSCCCBTTC
T ss_pred HHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhc--cCChhhhcC
Confidence 987654 468999999999999999999999988743 449999996
No 11
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=100.00 E-value=6.8e-31 Score=221.00 Aligned_cols=206 Identities=46% Similarity=0.913 Sum_probs=169.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
+.+|++|+|+|++||||||+++.|+++|+..|+++..+++|..+++.++.+++++..+..+.+....++|.++|+++...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 85 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL 85 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999889998888888656788888999887655677776667777777765556
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCC-CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ 210 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~-gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~ 210 (259)
+.+.+.+|.+||+|||++++++|+... |++.+|+..+....+.||++|||++|++++.+|+..|.++++..++++++.+
T Consensus 86 i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~ 165 (215)
T 1nn5_A 86 IKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALR 165 (215)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHH
T ss_pred HHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHH
Confidence 778888899999999999999997654 6778888777655678999999999999999999755466766678888888
Q ss_pred HHHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 024986 211 CYQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258 (259)
Q Consensus 211 ~y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~ 258 (259)
.|..+.. ..+++||++.++++++++|.+.+...+.. ...+||..||+
T Consensus 166 ~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~-~~~~~~~~~~~ 215 (215)
T 1nn5_A 166 CFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT-ATEKPLGELWK 215 (215)
T ss_dssp HHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHH-GGGSCCCBTTC
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhh-ccCcchhhhcC
Confidence 8987654 36899999999999999999999988875 56788899995
No 12
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=100.00 E-value=2.1e-31 Score=223.84 Aligned_cols=204 Identities=41% Similarity=0.776 Sum_probs=171.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
+.+|++|+|+|++||||||+++.|+++|+..++++..+++|..+++.|+.+++++..+..+++.....+|.++++++++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE 86 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999889988778888766788999998887666677777777777777665556
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCC-CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ 210 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~-gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~ 210 (259)
+.+.+..|..||+|||+++.++|+..+ +++.+|+..++.....||++|||++|++++.+|+..|.++++..++++++..
T Consensus 87 i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~~ 166 (212)
T 2wwf_A 87 IKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYE 166 (212)
T ss_dssp HHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHHH
T ss_pred HHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHHH
Confidence 778888899999999999888887644 6777888766655578999999999999999999866566776788889888
Q ss_pred HHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q 024986 211 CYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258 (259)
Q Consensus 211 ~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~~~~~~~~ 258 (259)
.|.++. ...+++||+++++++++++|.+.+... ...|+||..||+
T Consensus 167 ~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~ 212 (212)
T 2wwf_A 167 TYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI---KVEPEEFNFLWS 212 (212)
T ss_dssp HGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS---CCSCBCCCBTTC
T ss_pred HHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh---ccCCCchhhhcC
Confidence 897765 346899999999999999999999877 578999999995
No 13
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.97 E-value=8.4e-30 Score=211.51 Aligned_cols=187 Identities=28% Similarity=0.426 Sum_probs=151.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
++|+|+|++||||||+++.|+++|...|+.++.+++|. +++.|+.+++++. .+.+.+....++|.++|+.+...+.+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~-~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~i~~~ 78 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILL-EEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSC-SSHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCC-CCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999998899998888887 6788999999887 346888888888999998876448888
Q ss_pred HhcCCeEEEcccccchhhhhc-CCCCCHHHHHhh---hccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 136 LKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAP---EIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~---~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
+.+|.+||+|||++++++|++ .++++.+|+..+ ....+.||++|||++|++++.+|+..| ++++..++++++.+.
T Consensus 79 l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R-~~~~~~~~~~~~~~~ 157 (197)
T 2z0h_A 79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL-NRFEKREFLERVREG 157 (197)
T ss_dssp ----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC----CCCCCHHHHHHHHHH
T ss_pred HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc-CcccHHHHHHHHHHH
Confidence 889999999999999999987 456777776654 345678999999999999999999987 566656888999999
Q ss_pred HHhhhC---CCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 024986 212 YQMLRD---SSWKIIDACQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 212 y~~l~~---~~~~vIDa~~s~eev~~~I~~~i~~~l~ 245 (259)
|.++.. ..+++||++++++++.++|.+.+...+.
T Consensus 158 ~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 158 YLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTCC--
T ss_pred HHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 987643 4689999999999999999998876554
No 14
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.7e-27 Score=199.47 Aligned_cols=188 Identities=26% Similarity=0.435 Sum_probs=149.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC---CCCHHHHHHHHHHhHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS---HLDDHTIHLLFSANRWEKR 129 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~---~~~~~~~~ll~~a~r~~~~ 129 (259)
.+|++|+|+|++||||||+++.|+++++..| .++..++|. ++.+++++.++. .+++....+++.++|+.+.
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 75 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNS-----SDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRY 75 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTC-----CCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCc-----HHHHHHHHhccccccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998777 676667663 345566655432 4677666677777777654
Q ss_pred -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC-CCC--CC-------
Q 024986 130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG-YGG--ER------- 198 (259)
Q Consensus 130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~-~R~--d~------- 198 (259)
..+.+.+..|.+||+|||+++.++|+..+|.+.+|+..+....+.||++|||++|++++.+|+. .|+ ++
T Consensus 76 ~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~ 155 (213)
T 2plr_A 76 ERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADI 155 (213)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTT
T ss_pred HHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccccccccc
Confidence 4567788889999999999999999866778888888776666789999999999999999987 665 34
Q ss_pred ------cch-HHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 199 ------YEH-LEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 199 ------~e~-~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
++. .++++++...|.++.+ ..+++||+++++++++++|.+.+..++..
T Consensus 156 ~~~~d~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~~~ 211 (213)
T 2plr_A 156 FPGLSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELIDN 211 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence 333 4788888888887653 36899999999999999999999877653
No 15
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.95 E-value=3.6e-26 Score=188.82 Aligned_cols=186 Identities=33% Similarity=0.494 Sum_probs=149.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMMEA 134 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~~ 134 (259)
++|+|+|++||||||+++.|++++...|+.++..++|. +++.|+.+++++.++ .+++....+++.++++.++ ..+.+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~-~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~ 78 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIP 78 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-CCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999988889888888876 567888888887654 5777666666677777665 45678
Q ss_pred HHhcCCeEEEcccccchhhhhc-CCCCCHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH
Q 024986 135 KLKAGTTLIVDRYSYSGVAFSS-AKGIDIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ 210 (259)
Q Consensus 135 ~l~~g~~VI~DR~~~s~~ay~~-~~gl~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~ 210 (259)
.+.+|..||+|||++++++|++ .++.+.+++..+. .....||++|||++|++++.+|+..| ++++..++++++.+
T Consensus 79 ~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~~~~~~~~~~~~~ 157 (195)
T 2pbr_A 79 DLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK-NRFENKEFLEKVRK 157 (195)
T ss_dssp HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT-TCCCCHHHHHHHHH
T ss_pred HHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc-CccchHHHHHHHHH
Confidence 8889999999999999988875 3566666665433 22347999999999999999998754 45556678888888
Q ss_pred HHHhhhC--CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 211 CYQMLRD--SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 211 ~y~~l~~--~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
.|.++.. ..+++||++++++++.++|.+.+...+
T Consensus 158 ~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~l 193 (195)
T 2pbr_A 158 GFLELAKEEENVVVIDASGEEEEVFKEILRALSGVL 193 (195)
T ss_dssp HHHHHHHHSTTEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCCCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 8887652 368999999999999999999887554
No 16
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.90 E-value=5.1e-26 Score=191.17 Aligned_cols=184 Identities=25% Similarity=0.387 Sum_probs=138.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChH-HHHHHHHHhCC-C--CCCHHHHHHHHHHhHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSV-GQMISAYLSNQ-S--HLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~-g~~ir~~l~~~-~--~~~~~~~~ll~~a~r~~~~~~ 131 (259)
++|+|+|++||||||+++.|++.|...|+++..+++|..+++. ++.++.++... + ..++....+++.++|+.+...
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT 80 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence 4899999999999999999999998888888777776544444 66677665421 1 125666777788888765555
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCC------CHHHHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC------
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGI------DIEWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG------ 196 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl------~~~~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~------ 196 (259)
+.+.+..|++||+|||+++.++|+...+. ..+|+..+. ...+.||++|||++|++++.+|+..|+
T Consensus 81 i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~ 160 (214)
T 1gtv_A 81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGR 160 (214)
T ss_dssp HHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEE
T ss_pred HHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccccccc
Confidence 67777788999999999999998863221 135555543 244689999999999999999987652
Q ss_pred --CCcch-HHHHHHHHHHHHhhhC----CCeEEEcCCCCHHHHHHHHHHH
Q 024986 197 --ERYEH-LEFQRKVAQCYQMLRD----SSWKIIDACQSIEDVEKQLKEI 239 (259)
Q Consensus 197 --d~~e~-~~~~~rv~~~y~~l~~----~~~~vIDa~~s~eev~~~I~~~ 239 (259)
+++|. .++++++.+.|.++.+ ..+++||++++++++.++|.+.
T Consensus 161 ~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~~ 210 (214)
T 1gtv_A 161 ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPP 210 (214)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC--
T ss_pred ccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcCC
Confidence 23453 6899999999987753 3679999999999999998653
No 17
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.89 E-value=6.3e-25 Score=191.49 Aligned_cols=188 Identities=18% Similarity=0.170 Sum_probs=122.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE--------------------EEecCCCCChHHHHHHHH-HhCC
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE--------------------LWRFPDRTTSVGQMISAY-LSNQ 109 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~--------------------~~~~p~~~~~~g~~ir~~-l~~~ 109 (259)
+..++++|+|+|++||||||+++.|+++|.. ..++ ..++|. +++ +++. +.++
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~--~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~-g~~----~~~~~~~~~ 92 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCED--WEVVPEPVARWCNVQSTQDEFEELTMSQKN-GGN----VLQMMYEKP 92 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCTT--EEEECCCHHHHTSCCCC------------C-CCC----HHHHHHHCH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcCC--CEEEecchhhhhcccccccccccccccccc-CCc----hHHHHHhCc
Confidence 4467899999999999999999999998853 2221 122333 222 2332 3322
Q ss_pred CCCCHHHHHHH-HHHhHHH------HH-HHHHHHHhcCCeEEEcccccchhhhhcC-CCCC-----HHHHHhhhccC---
Q 024986 110 SHLDDHTIHLL-FSANRWE------KR-SMMEAKLKAGTTLIVDRYSYSGVAFSSA-KGID-----IEWCKAPEIGL--- 172 (259)
Q Consensus 110 ~~~~~~~~~ll-~~a~r~~------~~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~-~gl~-----~~~~~~~~~~~--- 172 (259)
..++.....++ +.+.|++ ++ ..+.+++..|.+||+|||++++.+|++. ++.+ .+|+..+....
T Consensus 93 ~~~~~~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~ 172 (263)
T 1p5z_B 93 ERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQS 172 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 12222222222 4444433 11 1223455678899999999999999874 3322 45665554332
Q ss_pred CCCCEEEEEeCCHHHHHhhcCCCCCC---cchHHHHHHHHHHHHhh-------------hCCCeEEEcCCCCHHHHHHHH
Q 024986 173 LAPDSVLYLDIPPEKAAERGGYGGER---YEHLEFQRKVAQCYQML-------------RDSSWKIIDACQSIEDVEKQL 236 (259)
Q Consensus 173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~~~~~~rv~~~y~~l-------------~~~~~~vIDa~~s~eev~~~I 236 (259)
+.||++|||++|++++.+|+..|+.. ....++++++...|..+ .+..+++||+++++++|+++|
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I 252 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL 252 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHH
Confidence 47999999999999999998755322 23468888888877654 124589999999999999999
Q ss_pred HHHHHHHHh
Q 024986 237 KEIVLDQVT 245 (259)
Q Consensus 237 ~~~i~~~l~ 245 (259)
.+.|.+.+.
T Consensus 253 ~~~l~~~l~ 261 (263)
T 1p5z_B 253 VEKVKEFLS 261 (263)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 18
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.89 E-value=5.9e-25 Score=188.28 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=108.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCC--ChHHHHHHHHH-hCCCCCCHHHHHHHHHHhHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRT--TSVGQMISAYL-SNQSHLDDHTIHLLFSANRWEK 128 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~--~~~g~~ir~~l-~~~~~~~~~~~~ll~~a~r~~~ 128 (259)
..+|.+|+|+|++||||||+++.|+.. +..+....+|... +..++.+++.+ ..+..+........+..++..+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~ 92 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSH 92 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHH
Confidence 467999999999999999999999876 3356666655310 01122222221 1110110001111111222222
Q ss_pred H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhh--------ccCCCCCEEEEEeCCHHHHHhhcCCCC---
Q 024986 129 R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPE--------IGLLAPDSVLYLDIPPEKAAERGGYGG--- 196 (259)
Q Consensus 129 ~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~--------~~~~~PdlvI~Ld~~~e~~~~R~~~R~--- 196 (259)
. ..+.+.+..|..|++|||.+++.+|+.. +++.+++..++ ...+.||++|||++|++++.+|+..|+
T Consensus 93 ~~~~i~~~l~~~r~v~~dry~~s~~ayq~~-~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~ 171 (230)
T 2vp4_A 93 TAPTNKKLKIMERSIFSARYCFVENMRRNG-SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE 171 (230)
T ss_dssp HCCCCSSEEEEESCHHHHHHTHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGG
T ss_pred HhccccCceeecCCccccHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcc
Confidence 1 1123334557788999999999999974 77766554332 146789999999999999999986543
Q ss_pred CCcchHHHHHHHHHHHHhhhC-------CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 197 ERYEHLEFQRKVAQCYQMLRD-------SSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 197 d~~e~~~~~~rv~~~y~~l~~-------~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
++.+..+|++++...|.++.. .++++||+++++|+|.++|.+.+...+..
T Consensus 172 e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~~ 228 (230)
T 2vp4_A 172 ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDA 228 (230)
T ss_dssp GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC-------------------
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence 222345899999999988742 35899999999999999999998877654
No 19
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.89 E-value=5.6e-24 Score=191.73 Aligned_cols=163 Identities=16% Similarity=0.142 Sum_probs=117.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHH-HHHHHHHhC-----CCCCCHH-HH-----
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVG-QMISAYLSN-----QSHLDDH-TI----- 117 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g-~~ir~~l~~-----~~~~~~~-~~----- 117 (259)
+.+|++|+|||++||||||+++.|+++|...+ .++.++||.. ++.++ +.|++++.+ .+.+++. ++
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~-~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~ 82 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAH 82 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccCC-cEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHH
Confidence 45789999999999999999999999998643 4777888862 13445 677777631 2346653 22
Q ss_pred -HHHHH---HhHHHHHHHH------HHHHhcCCeEEEcccccchhh-hhcC----CCCCHHHHHhhhcc---CCCCCEEE
Q 024986 118 -HLLFS---ANRWEKRSMM------EAKLKAGTTLIVDRYSYSGVA-FSSA----KGIDIEWCKAPEIG---LLAPDSVL 179 (259)
Q Consensus 118 -~ll~~---a~r~~~~~~i------~~~l~~g~~VI~DR~~~s~~a-y~~~----~gl~~~~~~~~~~~---~~~PdlvI 179 (259)
+++|+ +.|.++...+ .|++..|.+||+|||++|+++ |+.+ .+++.+.+..+... .+.||++|
T Consensus 83 lQLlf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l~~~~~~~~~PDLtI 162 (334)
T 1p6x_A 83 YQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIV 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEE
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHccCCCCCCEEE
Confidence 23454 3565654322 267778999999999999997 4432 36776666655432 35799999
Q ss_pred EEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 024986 180 YLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR 216 (259)
Q Consensus 180 ~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~ 216 (259)
|||+||+++++|+..|+ +++ +.+|++++++.|.++.
T Consensus 163 yLd~~pe~~l~RI~~RgR~~Eri-~~eyl~~vr~~Y~~l~ 201 (334)
T 1p6x_A 163 VTTLNVEEHIRRLRTRARIGEQI-DITLIATLRNVYFMLV 201 (334)
T ss_dssp EEECCHHHHHHHHHHHSCTTCCC-CHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhcCCCcccC-CHHHHHHHHHHHHHHH
Confidence 99999999999986553 333 4699999999998864
No 20
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.86 E-value=2.3e-22 Score=181.03 Aligned_cols=161 Identities=15% Similarity=0.146 Sum_probs=108.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHH-HHHHHHHhC-----CCCCCHH-H-----HH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVG-QMISAYLSN-----QSHLDDH-T-----IH 118 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g-~~ir~~l~~-----~~~~~~~-~-----~~ 118 (259)
.++++|+|||++||||||+++.|+++|...| ++.++||.. ++..| +.|++++.+ .+.+++. + ..
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~~~g--v~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~ 79 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSA 79 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHH
Confidence 5789999999999999999999999998776 777888851 01123 677777653 2346665 2 22
Q ss_pred HHHHHhHHHH----H-HHHHH------HHhcCCeEEEcccccchh-hhhcC----CCCCHHHHHhhhcc---CCCCCEEE
Q 024986 119 LLFSANRWEK----R-SMMEA------KLKAGTTLIVDRYSYSGV-AFSSA----KGIDIEWCKAPEIG---LLAPDSVL 179 (259)
Q Consensus 119 ll~~a~r~~~----~-~~i~~------~l~~g~~VI~DR~~~s~~-ay~~~----~gl~~~~~~~~~~~---~~~PdlvI 179 (259)
.++.+.|+.+ . ..+++ .++.|.+||+|||++|++ +|+.+ .+++.+.+..+... ...||+++
T Consensus 80 qL~fa~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~~~~~ppdlt~ 159 (331)
T 1e2k_A 80 QITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIV 159 (331)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEE
T ss_pred HHHHHhhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCeEEE
Confidence 2333434322 1 11222 235789999999999998 68753 36776666555432 23468999
Q ss_pred EEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 024986 180 YLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR 216 (259)
Q Consensus 180 ~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~ 216 (259)
++|+||+++++|+..|+ +++ ..+|++++++.|.++.
T Consensus 160 lldl~pe~~l~RI~~Rgr~~Eri-~~~yl~rvr~~Y~~l~ 198 (331)
T 1e2k_A 160 LGALPEDRHIDRLAKRQRPGERL-DLAMLAAIRRVYGLLA 198 (331)
T ss_dssp EEECCHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHhcCCCcccC-CHHHHHHHHHHHHHHH
Confidence 99999999999987553 443 5799999999998763
No 21
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.86 E-value=4.8e-22 Score=179.42 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=117.0
Q ss_pred CCCccEEEEEcCCCCCHHHHH-HHHHHHHhhCCCeEEEEecCCCC---ChHH-HHHHHHHhC-----CCCCCHH------
Q 024986 52 DSRGALVVLEGLDRCGKTSQC-SRLLSYLEGLGHSVELWRFPDRT---TSVG-QMISAYLSN-----QSHLDDH------ 115 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla-~~L~~~l~~~g~~v~~~~~p~~~---~~~g-~~ir~~l~~-----~~~~~~~------ 115 (259)
+.+|++|+|||++||||||++ +.|++.|...|. ++.++||. + +.+| +.|++++.+ .+.+++.
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~-vv~trEPg-g~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~ 86 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNR-ILLIGEPL-SYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLT 86 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGGG-EEEECCCH-HHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCCc-EEEEeCCC-ccccCcccHHHHHHHHhchhhhcccccchhhhhHHH
Confidence 467899999999999999999 999999987773 78889996 3 4556 778887753 3456653
Q ss_pred HHHHHHHHhHHHHH-HHHH------------HHHhcCCeEEEcccccchhhhhc-C----CCCCHHHHHhhhc---cCCC
Q 024986 116 TIHLLFSANRWEKR-SMME------------AKLKAGTTLIVDRYSYSGVAFSS-A----KGIDIEWCKAPEI---GLLA 174 (259)
Q Consensus 116 ~~~ll~~a~r~~~~-~~i~------------~~l~~g~~VI~DR~~~s~~ay~~-~----~gl~~~~~~~~~~---~~~~ 174 (259)
+...++.+.++.+. +++. +++..|.+||+|||++|+.+|+. + ++++.+.+..++. ....
T Consensus 87 ~e~ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~L~~~~~~~~~ 166 (341)
T 1osn_A 87 AHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPP 166 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCCCCCS
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHHHHHhhhcCCC
Confidence 33323333343332 2222 34567889999999999997764 3 4677666655543 3357
Q ss_pred CCEEEEEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 024986 175 PDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR 216 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~ 216 (259)
||++||||+||+++.+|+..|+ |++| .+|++++++.|.+++
T Consensus 167 PDltI~Ld~~pe~~l~RI~~RgR~~Erie-~~yl~rvr~~Y~~l~ 210 (341)
T 1osn_A 167 GTNLVVCTVSLPSHLSRVSKRARPGETVN-LPFVMVLRNVYIMLI 210 (341)
T ss_dssp CCEEEEEECCHHHHHHHCC------CCCC-HHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHhhCCCcccCC-HHHHHHHHHHHHHHH
Confidence 9999999999999999998664 4555 699999999998864
No 22
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.86 E-value=4.4e-22 Score=181.47 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=109.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCC--CChHH-HHHHHHHhC-----CCCCCHH-H-----
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDR--TTSVG-QMISAYLSN-----QSHLDDH-T----- 116 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~--~~~~g-~~ir~~l~~-----~~~~~~~-~----- 116 (259)
.+.++++|+|||++||||||+++.|+++|...| ++.++||.. ++..| +.|++++.+ .+.+++. +
T Consensus 45 ~~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g--vv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a 122 (376)
T 1of1_A 45 KMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMT 122 (376)
T ss_dssp -CCEEEEEEECSSTTSSHHHHHHHHHC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHH
Confidence 356899999999999999999999999998777 777888851 01123 567777653 3456665 3
Q ss_pred HH-HHHHHhHHH----HH-HHHHH------HHhcCCeEEEcccccchh-hhhcC----CCCCHHHHHhhhcc---CCCCC
Q 024986 117 IH-LLFSANRWE----KR-SMMEA------KLKAGTTLIVDRYSYSGV-AFSSA----KGIDIEWCKAPEIG---LLAPD 176 (259)
Q Consensus 117 ~~-ll~~a~r~~----~~-~~i~~------~l~~g~~VI~DR~~~s~~-ay~~~----~gl~~~~~~~~~~~---~~~Pd 176 (259)
.. ++|+ .|+. +. +.+++ .++.|.+||+|||++|++ +|+.+ .+++.+.+..+... ...||
T Consensus 123 ~~QL~fa-~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~~~~~~~ppd 201 (376)
T 1of1_A 123 SAQITMG-MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGT 201 (376)
T ss_dssp HHHHHHH-HHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTC
T ss_pred HHHHHHh-ccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCe
Confidence 12 2333 3321 11 12222 346789999999999998 68753 36777666555432 23467
Q ss_pred EEEEEeCCHHHHHhhcCCCC---CCcchHHHHHHHHHHHHhhh
Q 024986 177 SVLYLDIPPEKAAERGGYGG---ERYEHLEFQRKVAQCYQMLR 216 (259)
Q Consensus 177 lvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~~~y~~l~ 216 (259)
+++++|+||+++++|+..|+ |++ ..+|++++++.|.++.
T Consensus 202 lt~Lldl~pe~~l~RI~~RgR~~Eri-~leyl~rVr~~Y~~la 243 (376)
T 1of1_A 202 NIVLGALPEDRHIDRLAKRQRPGERL-DLAMLAAIRRVYGLLA 243 (376)
T ss_dssp EEEEEECCHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHhcCCCcccC-CHHHHHHHHHHHHHHH
Confidence 99999999999999987553 443 5799999999998763
No 23
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.85 E-value=3.7e-23 Score=177.93 Aligned_cols=185 Identities=12% Similarity=0.110 Sum_probs=117.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCC--------------hHHHHHHH-HHhCCCCCCHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTT--------------SVGQMISA-YLSNQSHLDDHTIH 118 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~--------------~~g~~ir~-~l~~~~~~~~~~~~ 118 (259)
+|++|+|+|++||||||+++.|+++|+. . ..+.+|.... ..|..+++ ++.++... .....
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~--~--~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 75 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE--W--HVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPARW-SYTFQ 75 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTT--S--EEECCCGGGTSCCC------------CCCHHHHHHHSHHHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCC--C--eeeecchhhhccccccccccccccccCCchHHHHHhCcccc-hhHHH
Confidence 5789999999999999999999999853 2 3345554211 01222223 23222100 11222
Q ss_pred HHHHHhHHHHH-----HH----HHHHHhcCCeEEEcccccchhhhhcCCC------CCHHHHHhhhccC---CCCCEEEE
Q 024986 119 LLFSANRWEKR-----SM----MEAKLKAGTTLIVDRYSYSGVAFSSAKG------IDIEWCKAPEIGL---LAPDSVLY 180 (259)
Q Consensus 119 ll~~a~r~~~~-----~~----i~~~l~~g~~VI~DR~~~s~~ay~~~~g------l~~~~~~~~~~~~---~~PdlvI~ 180 (259)
..+...|+... .. +.+.+..|..||+|||+++..+|+.+.. +..+|+..+.... +.||++||
T Consensus 76 ~~~ll~r~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~~i~ 155 (241)
T 2ocp_A 76 TFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIY 155 (241)
T ss_dssp HHHHHHHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSHHHHCCCEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 23333443321 01 1223346778889999999999986431 1234555444333 48999999
Q ss_pred EeCCHHHHHhhcCCCCCCcc---hHHHHHHHHHHHHhhh-------------CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 181 LDIPPEKAAERGGYGGERYE---HLEFQRKVAQCYQMLR-------------DSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 181 Ld~~~e~~~~R~~~R~d~~e---~~~~~~rv~~~y~~l~-------------~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
|++|++++.+|+..|+...+ ..+|++++...|..+. ...+++||++.++++|.+++.+++...
T Consensus 156 l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~~i~~~i 234 (241)
T 2ocp_A 156 LQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREV 234 (241)
T ss_dssp EECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHHHHHHHH
Confidence 99999999999876543333 3689999999998752 247899999999888777776666543
No 24
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.84 E-value=4.3e-20 Score=151.84 Aligned_cols=169 Identities=11% Similarity=0.105 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHH-HHHHhCC----CCCCHH--HHHHHHHHhHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMI-SAYLSNQ----SHLDDH--TIHLLFSANRWEK 128 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~i-r~~l~~~----~~~~~~--~~~ll~~a~r~~~ 128 (259)
++|+|+|++||||||+++.|+++|+..|+++..+.. +..+++.+ ++.+..+ ..+.+. ...+.+++++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 75 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY---GDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG--- 75 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH---HHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC---ChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH---
Confidence 589999999999999999999999988887776531 11222222 1221111 123333 3333333332
Q ss_pred HHHHHHHH--hcCCeEEEcccccchhhhh--cCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh-cCC--CC--CCc
Q 024986 129 RSMMEAKL--KAGTTLIVDRYSYSGVAFS--SAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER-GGY--GG--ERY 199 (259)
Q Consensus 129 ~~~i~~~l--~~g~~VI~DR~~~s~~ay~--~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R-~~~--R~--d~~ 199 (259)
+.+.+ ..|..||+||| +.+.|+ ...+++.+++..+ .||++|||++|++++.+| +.. |+ +.+
T Consensus 76 ---i~~~l~~~~~~~vi~d~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~ 145 (194)
T 1nks_A 76 ---IAEEARAGGEGYLFIDTH--AVIRTPSGYLPGLPSYVITEI-----NPSVIFLLEADPKIILSRQKRDTTRNRNDYS 145 (194)
T ss_dssp ---HHHHHHHTCSSEEEEEEC--SEEEETTEEEESSCHHHHHHH-----CCSEEEEEECCHHHHHHHHHHCTTTCCCCCC
T ss_pred ---HHHHhhccCCCEEEECCc--hhhccccccccCCCHHHHHhc-----CCCEEEEEeCCHHHHHHHHHhhcccCCCCcc
Confidence 45666 67899999998 345565 2345555666542 489999999999998866 544 53 222
Q ss_pred c--hHHHHHHHHHHHHhhh----CCCeEEE-cCCCCHHHHHHHHHHHH
Q 024986 200 E--HLEFQRKVAQCYQMLR----DSSWKII-DACQSIEDVEKQLKEIV 240 (259)
Q Consensus 200 e--~~~~~~rv~~~y~~l~----~~~~~vI-Da~~s~eev~~~I~~~i 240 (259)
+ ..++++++.+.|.++. ...+++| |+++++++++++|.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 146 DESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 2 3466677778887653 2467899 99999999999998865
No 25
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.83 E-value=8.3e-20 Score=147.67 Aligned_cols=161 Identities=23% Similarity=0.252 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
++|+|+|++||||||+++.|++.++ +.++ ... .+.. .. . . ...+| . ....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i--~~d----~~~~---~~-~-----~---~~~~~-----~----~~~~ 51 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK---YPII--KGS----SFEL---AK-S-----G---NEKLF-----E----HFNK 51 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC---CCEE--ECC----CHHH---HT-T-----C---HHHHH-----H----HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---Ceee--cCc----cccc---ch-h-----H---HHHHH-----H----HHHH
Confidence 4899999999999999999999984 4333 211 1110 00 0 0 00111 1 1224
Q ss_pred HhcCCeEEEcccccchhhhhcC-C---CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 136 LKAGTTLIVDRYSYSGVAFSSA-K---GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~~-~---gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
+..|..||+||+.++.++|+.. . .+...+...+....+.||++|||++|++++.+|+..|+..++..++++++.+.
T Consensus 52 l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~ 131 (173)
T 3kb2_A 52 LADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILEL 131 (173)
T ss_dssp HTTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHH
T ss_pred HHhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 5678889999999999999742 1 22345555555556789999999999999999998765455556788888888
Q ss_pred HHhhhC---CCeEEEcCC-CCHHHHHHHHHHHHHHHHhh
Q 024986 212 YQMLRD---SSWKIIDAC-QSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 212 y~~l~~---~~~~vIDa~-~s~eev~~~I~~~i~~~l~~ 246 (259)
|.++.. ..+++||++ .++++++++|.+.+......
T Consensus 132 ~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~~~ 170 (173)
T 3kb2_A 132 YREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHHH 170 (173)
T ss_dssp HHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCCcc
Confidence 987643 368999998 59999999999999876554
No 26
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.83 E-value=5.9e-20 Score=152.51 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=111.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
++|+|+|++||||||+++.|+++|+. . .+.+|..+..+ ++.++.++..+ +....+.+.++++.+ +.+.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~---~--~~~e~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~r~~~---~~~~ 68 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGY---E--IFKEPVEENPY---FEQYYKDLKKT-VFKMQIYMLTARSKQ---LKQA 68 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCC---E--EECCCGGGCTT---HHHHTTCHHHH-HHHHHHHHHHHHHHH---HC--
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCC---c--EEcccccccHH---HHHHHhCcccc-chhHHHHHHHHHHHH---HHHh
Confidence 47999999999999999999999953 2 23455322222 33333322111 111223445555443 3445
Q ss_pred HhcCCeEEEcccccchhhhhcC---CC--CCH--HHHHh----hhccC-------CCCCEEEEEeCCHHHHHhhcCCCCC
Q 024986 136 LKAGTTLIVDRYSYSGVAFSSA---KG--IDI--EWCKA----PEIGL-------LAPDSVLYLDIPPEKAAERGGYGGE 197 (259)
Q Consensus 136 l~~g~~VI~DR~~~s~~ay~~~---~g--l~~--~~~~~----~~~~~-------~~PdlvI~Ld~~~e~~~~R~~~R~d 197 (259)
+..|. ||+||+++++++|+.. .| .+. .++.. +...+ ..||++|||++|++++.+|+..|+.
T Consensus 69 ~~~~~-vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r 147 (205)
T 2jaq_A 69 KNLEN-IIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR 147 (205)
T ss_dssp ----C-EEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC
T ss_pred hccCC-EEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 55665 9999999999988752 12 121 12221 21222 6799999999999999999876644
Q ss_pred Ccch---HHHHHHHHHHHHhhh-----CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 198 RYEH---LEFQRKVAQCYQMLR-----DSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 198 ~~e~---~~~~~rv~~~y~~l~-----~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
..+. .++++++.+.|..+. ....++||++.++++++++|.+.+...
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 148 SEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201 (205)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 3332 367778877776532 236899999999999999999988654
No 27
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.81 E-value=7.8e-19 Score=145.04 Aligned_cols=171 Identities=17% Similarity=0.230 Sum_probs=113.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW 126 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~ 126 (259)
+.++++|+|+|++||||||+++.|+++++ +.++.. ..+..+++.|+.+++++.++....... ++
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~----- 74 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET---VL----- 74 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHH---HH-----
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHH---HH-----
Confidence 45789999999999999999999999984 444321 111124567788888776543332211 11
Q ss_pred HH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--
Q 024986 127 EK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE-- 200 (259)
Q Consensus 127 ~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e-- 200 (259)
.. ...+.+.+..|..||+|+|+.+. ++...+...+..||++|||++|++++.+|+..|+ ++++
T Consensus 75 ~~~~~~i~~~~~~~~~vi~d~~~~~~-----------~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~ 143 (196)
T 2c95_A 75 DMLRDAMVAKVNTSKGFLIDGYPREV-----------QQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDN 143 (196)
T ss_dssp HHHHHHHHHHTTTCSCEEEESCCCSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGS
T ss_pred HHHHHHHHhccccCCcEEEeCCCCCH-----------HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCC
Confidence 11 13345556678899999876531 2333333334679999999999999999986542 3333
Q ss_pred hHHHHHHHHHHHHhh-------hC-CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 201 HLEFQRKVAQCYQML-------RD-SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 201 ~~~~~~rv~~~y~~l-------~~-~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
...+.+++...|... .. ..+++||++.++++++++|.+.+...+
T Consensus 144 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 144 EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 234555665544321 11 356789999999999999999887653
No 28
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.80 E-value=3e-18 Score=145.77 Aligned_cols=169 Identities=15% Similarity=0.197 Sum_probs=110.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE----Ee-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL----WR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW 126 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~----~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~ 126 (259)
..++++|+|.|||||||||||+.|+++|+ +..+. ++ +...++++|..+++++..+..+++....-+. .
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv-~--- 98 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALL-K--- 98 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHH-H---
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHH-H---
Confidence 46889999999999999999999999994 43331 11 2233577888888887766544443221111 1
Q ss_pred HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccc-hH
Q 024986 127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYE-HL 202 (259)
Q Consensus 127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e-~~ 202 (259)
+.+.........+|+|+||.+. +....+......|+++|+|++|.+++.+|+..|.. |.+ +.
T Consensus 99 ---~~l~~~~~~~~g~ilDGfPRt~-----------~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~ 164 (217)
T 3umf_A 99 ---EAMIKLVDKNCHFLIDGYPREL-----------DQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNE 164 (217)
T ss_dssp ---HHHHHHTTTCSEEEEETBCSSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHH
T ss_pred ---HHHhhccccccCcccccCCCcH-----------HHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCH
Confidence 1122222345578999999743 22333444556799999999999999999987632 211 22
Q ss_pred H-HHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 203 E-FQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 203 ~-~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+ +.+|+ +.|.+. . ...++.||+++++|+|+++|.+.|.+
T Consensus 165 e~i~~Rl-~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 165 ETIVKRF-RTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHHH-HHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 3 33333 334331 1 24689999999999999999998864
No 29
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.79 E-value=2.7e-18 Score=142.06 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=111.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE 127 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~ 127 (259)
.++++|+|+|++||||||+++.|+++++ +.++.. ..+..+++.+..+++++..+.........-+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~------- 79 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLEL------- 79 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHH-------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHH-------
Confidence 4678999999999999999999999985 444321 1121245667777777765433332111000
Q ss_pred HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC---Ccch--H
Q 024986 128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE---RYEH--L 202 (259)
Q Consensus 128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d---~~e~--~ 202 (259)
....+.+.+..|..||+|+++.+.. ....+...++.||++|||++|++++.+|+..|+. +++. .
T Consensus 80 ~~~~i~~~~~~~~~vi~dg~~~~~~-----------~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~ 148 (199)
T 2bwj_A 80 LKEAMVASLGDTRGFLIDGYPREVK-----------QGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTK 148 (199)
T ss_dssp HHHHHHHHTTSCSCEEEETCCSSHH-----------HHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHH
T ss_pred HHHHHhcccccCccEEEeCCCCCHH-----------HHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHH
Confidence 0123445555688999999876431 1112223345799999999999999999876542 3332 3
Q ss_pred HHHHHHHHHHHhh-------hC-CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQML-------RD-SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 203 ~~~~rv~~~y~~l-------~~-~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
++.+++...|... .. ..+++||++.++++++++|.+.+...+
T Consensus 149 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~~ 198 (199)
T 2bwj_A 149 TIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF 198 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 5556655544332 11 346899999999999999999887654
No 30
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.78 E-value=1.5e-18 Score=147.01 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=112.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE-EEec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE-LWRF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~-~~~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
.++++|+|+|++||||||+++.|+++|+..++++. .++. +..+++.|..+++++..+..... .....+..++..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~-~~~~~~~~~~~~--- 78 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD-EIVVNMVKERLR--- 78 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHH---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCH-HHHHHHHHHHHh---
Confidence 46789999999999999999999999964322210 0111 11245778888888776533332 222222222221
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC--------------
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-------------- 196 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-------------- 196 (259)
.+.+..+.+|| |+|+.+. +++..+......||++|||++|++++.+|+..|.
T Consensus 79 --~~~~~~~~~vi-dg~~~~~-----------~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~ 144 (222)
T 1zak_A 79 --QPDAQENGWLL-DGYPRSY-----------SQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYS 144 (222)
T ss_dssp --SHHHHHTCEEE-ESCCCSH-----------HHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSS
T ss_pred --hccccCCcEEE-ECCCCCH-----------HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccC
Confidence 23333444555 9876532 2222333344679999999999999999986542
Q ss_pred --------CCcc------hHHHHHHHHHHHHh---hh---CCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcC
Q 024986 197 --------ERYE------HLEFQRKVAQCYQM---LR---DSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKG 250 (259)
Q Consensus 197 --------d~~e------~~~~~~rv~~~y~~---l~---~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~ 250 (259)
++++ .....+++...|.+ +. +..+++||+++++++|+++|.+.+...+..+...
T Consensus 145 pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~~~ 218 (222)
T 1zak_A 145 PPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEM 218 (222)
T ss_dssp CCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHhhccccccc
Confidence 0111 11334444444442 21 2358899999999999999999999888766543
No 31
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.77 E-value=6.2e-18 Score=143.81 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=107.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ecC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RFP-DRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~p-~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
++|+|+|++||||||+++.|++++ |+.++.. +++ ..+++.|+.+++++.++. +.+... + ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~l---g~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~-~~~~~~--~--------~~ 66 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKY---SLAHIESGGIFREHIGGGTELGKKAKEFIDRGD-LVPDDI--T--------IP 66 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTC-CCCHHH--H--------HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCC-cCcHHH--H--------HH
Confidence 579999999999999999999998 4555544 443 225678888888876543 322110 0 11
Q ss_pred HHHHHHhc--CCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC---C-------
Q 024986 131 MMEAKLKA--GTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG---E------- 197 (259)
Q Consensus 131 ~i~~~l~~--g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d------- 197 (259)
.+.+.+.+ |..||+|+|+.+. . + ..++..+ ......||++|||++|++++.+|+..|+ +
T Consensus 67 ~i~~~l~~~~g~~vIlDg~~~~~-~-~------~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~ 138 (223)
T 2xb4_A 67 MVLETLESKGKDGWLLDGFPRNT-V-Q------AQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNN 138 (223)
T ss_dssp HHHHHHHHHCTTCEEEESCCCSH-H-H------HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCB
T ss_pred HHHHHHhcccCCeEEEeCCcCCH-H-H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccc
Confidence 23444544 8889999876531 1 0 1222222 1233579999999999999999986553 1
Q ss_pred ------------------Ccc-----hHH---------HHHHH---HH---HHHhhh---CCCeEEEcCCCCHHHHHHHH
Q 024986 198 ------------------RYE-----HLE---------FQRKV---AQ---CYQMLR---DSSWKIIDACQSIEDVEKQL 236 (259)
Q Consensus 198 ------------------~~e-----~~~---------~~~rv---~~---~y~~l~---~~~~~vIDa~~s~eev~~~I 236 (259)
+++ ..+ |++++ .+ .|.+++ ...+++||+++++++|+++|
T Consensus 139 ~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i 218 (223)
T 2xb4_A 139 IFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTL 218 (223)
T ss_dssp TTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHH
T ss_pred cccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHH
Confidence 111 112 44442 55 777654 24689999999999999999
Q ss_pred HHHH
Q 024986 237 KEIV 240 (259)
Q Consensus 237 ~~~i 240 (259)
.+.+
T Consensus 219 ~~~l 222 (223)
T 2xb4_A 219 LAQL 222 (223)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 32
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.77 E-value=2.4e-17 Score=135.48 Aligned_cols=172 Identities=23% Similarity=0.266 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-------ecCCCCChHHHHHHHHHhCCCCCCHH-HHHHHHHHhH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-------RFPDRTTSVGQMISAYLSNQSHLDDH-TIHLLFSANR 125 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-------~~p~~~~~~g~~ir~~l~~~~~~~~~-~~~ll~~a~r 125 (259)
++++|+|+|++||||||+++.|++.++ +.++.. .++. ++..++.+++++.++...... ...+++..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~-- 75 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNP-DSQYGELIEKYIKEGKIVPVEITISLLKRE-- 75 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCT-TSTTHHHHHHHHHTTCCCCHHHHHHHHHHH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhcc-CChHHHHHHHHHHCCCcCCHHHHHHHHHHH--
Confidence 578999999999999999999999884 444321 1122 345677777777654322221 22222211
Q ss_pred HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc-h
Q 024986 126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE-H 201 (259)
Q Consensus 126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e-~ 201 (259)
+......+..+..||+|+++.+...++ .|...+. ....||++|||++|++++.+|+..|+ ++.+ +
T Consensus 76 ---~~~~~~~~~~~~~vi~dg~~~~~~~~~-------~~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~ 144 (196)
T 1tev_A 76 ---MDQTMAANAQKNKFLIDGFPRNQDNLQ-------GWNKTMD-GKADVSFVLFFDCNNEICIERCLERGKSSGRSDDN 144 (196)
T ss_dssp ---HHHHHHHCTTCCEEEEESCCCSHHHHH-------HHHHHHT-TTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCC
T ss_pred ---HHhhhccccCCCeEEEeCCCCCHHHHH-------HHHHHhc-ccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCC
Confidence 111122334578999999988654432 2322222 23568999999999999999986442 2222 2
Q ss_pred HHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 202 LEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 202 ~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+...+....|... . ...+++||++.++++++++|.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 145 RESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 23222222222221 1 13578999999999999999998764
No 33
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.76 E-value=1.7e-19 Score=159.82 Aligned_cols=163 Identities=14% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
..+++|+|||.|||||||+++.|.+.|+.+|+.|+.+.+|+ ++.++ . .+- .| +
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt-----~eE~~----~--~yl----------~R------~ 136 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT-----ETERG----Q--WYF----------QR------Y 136 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC-----HHHHT----S--CTT----------HH------H
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC-----hHHHh----c--hHH----------HH------H
Confidence 46899999999999999999999999999999999888886 23221 1 110 11 2
Q ss_pred HHHH-hcCCeEEEcccccchhhhhcC-CCCCH----HHHHhhh------ccCCCCCEEEEEeCCHHHHHhhcCCCC---C
Q 024986 133 EAKL-KAGTTLIVDRYSYSGVAFSSA-KGIDI----EWCKAPE------IGLLAPDSVLYLDIPPEKAAERGGYGG---E 197 (259)
Q Consensus 133 ~~~l-~~g~~VI~DR~~~s~~ay~~~-~gl~~----~~~~~~~------~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d 197 (259)
.+.+ ++|.+||+|||+|+.++|+.. .+++. .++..++ ...+.|++.|||++|+++..+|+..|. +
T Consensus 137 ~~~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~ 216 (304)
T 3czq_A 137 VATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPL 216 (304)
T ss_dssp HTTCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTT
T ss_pred HHhcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcc
Confidence 3445 679999999999999999874 34443 2333322 223589999999999999999986441 1
Q ss_pred C---c-----chHHHHHHHHHHHHhhh------CCCeEEEcCCCCH---HHHHHHHHHHHHH
Q 024986 198 R---Y-----EHLEFQRKVAQCYQMLR------DSSWKIIDACQSI---EDVEKQLKEIVLD 242 (259)
Q Consensus 198 ~---~-----e~~~~~~rv~~~y~~l~------~~~~~vIDa~~s~---eev~~~I~~~i~~ 242 (259)
. + +..+++.+..++|.++. ..+|++||++... ..|.+.|.+.|..
T Consensus 217 k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~ 278 (304)
T 3czq_A 217 KIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDY 278 (304)
T ss_dssp TGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCC
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhh
Confidence 1 1 12355566666676542 1489999998644 4555555555443
No 34
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.75 E-value=2.7e-17 Score=138.82 Aligned_cols=164 Identities=23% Similarity=0.311 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
|+|+|.|||||||+|||+.|+++++ +..+.+ + +...+++.|..++.++..+.-+++... ..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv-----------~~ 66 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLI-----------IA 66 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHH-----------HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHH-----------HH
Confidence 5799999999999999999999994 433321 1 111235566666666665543333211 12
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHH-hhhccCCCCCEEEEEeCCHHHHHhhcCCCC-------------
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCK-APEIGLLAPDSVLYLDIPPEKAAERGGYGG------------- 196 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~-~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------------- 196 (259)
.+...+.+.+.+|+|+||.+.- |. +.+. .+......||++|+|++|.+++.+|+..|.
T Consensus 67 lv~~~l~~~~~~ilDGfPRt~~--Qa------~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~ 138 (206)
T 3sr0_A 67 LIEEVFPKHGNVIFDGFPRTVK--QA------EALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKY 138 (206)
T ss_dssp HHHHHCCSSSCEEEESCCCSHH--HH------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTT
T ss_pred HHHHhhccCCceEecCCchhHH--HH------HHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeec
Confidence 2344455556689999997532 11 2222 223445679999999999999999986541
Q ss_pred ----------CCc-chHH-HHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 197 ----------ERY-EHLE-FQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 197 ----------d~~-e~~~-~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+- ++.+ ..+|+ +.|.+. . ...++.||+++++++|+++|.++|.+
T Consensus 139 ~pp~~g~~l~~r~DD~~e~i~~Rl-~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 139 NPPPPGVKVIQREDDKPEVIKKRL-EVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp BCCCTTCCCBCCGGGSHHHHHHHH-HHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred cCCCCCceecccCCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 011 1223 33343 344331 1 14678999999999999999998753
No 35
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.74 E-value=6e-17 Score=136.93 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=98.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE------ecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW------RFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE 127 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~------~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~ 127 (259)
++++|+|+|++||||||+++.|+++| |+.++.. ..+. +++.|+.+++++..+.........
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~li~~~~~~-~t~~g~~i~~~~~~g~~~~~~~~~--------- 70 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY---GLAHLSTGDMLREAIKN-GTKIGLEAKSIIESGNFVGDEIVL--------- 70 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHT-C--CCHHHHHHHHHTCCCCHHHHH---------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CceEEehhHHHHHHHHc-CCHHHHHHHHHHHCCCcCCHHHHH---------
Confidence 56899999999999999999999999 4555432 1222 344566677766544322221110
Q ss_pred HHHHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCC-------
Q 024986 128 KRSMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGG------- 196 (259)
Q Consensus 128 ~~~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------- 196 (259)
..+.+.+. .|..||+|+|+.+. . + .+++.. +......||++|||++|++++.+|+..|.
T Consensus 71 --~~i~~~l~~~~~~~~~i~dg~~~~~-~-~------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~ 140 (217)
T 3be4_A 71 --GLVKEKFDLGVCVNGFVLDGFPRTI-P-Q------AEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGR 140 (217)
T ss_dssp --HHHHHHHHTTTTTTCEEEESCCCSH-H-H------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCC
T ss_pred --HHHHHHHhccccCCCEEEeCCCCCH-H-H------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccC
Confidence 11223332 36779999887642 1 1 123332 22233579999999999999999986542
Q ss_pred -------------------CCcch--HHH----HHHHHHHHHh-------hh-CCCeEEEcCCCCHHHHHHHHHHH
Q 024986 197 -------------------ERYEH--LEF----QRKVAQCYQM-------LR-DSSWKIIDACQSIEDVEKQLKEI 239 (259)
Q Consensus 197 -------------------d~~e~--~~~----~~rv~~~y~~-------l~-~~~~~vIDa~~s~eev~~~I~~~ 239 (259)
++++. .++ .+++...+.. .. ...+++||+++++++|+++|.+.
T Consensus 141 ~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 141 IYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216 (217)
T ss_dssp EEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred ccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence 12211 112 2233222111 11 13688999999999999999875
No 36
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.73 E-value=1.8e-16 Score=133.91 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=105.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e--cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R--FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW 126 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~--~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~ 126 (259)
.+|++|+|+|++||||||+++.|+++++ +.++.. + .+. +++.|+.+++++..+......... .+...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~-~~~~g~~i~~~~~~g~~~~~~~~~-~~l~~~- 75 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAK-GTQLGLEAKKIMDQGGLVSDDIMV-NMIKDE- 75 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH-HHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHHHc-CChHHHHHHHHHHCCCcCCHHHHH-HHHHHH-
Confidence 3678999999999999999999999984 444432 2 122 567788888887765433322111 111111
Q ss_pred HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC---------
Q 024986 127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG--------- 196 (259)
Q Consensus 127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~--------- 196 (259)
+......|..+|+|+|+.+. . +. +.+..+ ......||++|||++|++++.+|+..|.
T Consensus 76 -----l~~~~~~~~~~i~dg~~~~~-~-~~------~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y 142 (220)
T 1aky_A 76 -----LTNNPACKNGFILDGFPRTI-P-QA------EKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSY 142 (220)
T ss_dssp -----HHHCGGGGSCEEEESCCCSH-H-HH------HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEE
T ss_pred -----HHhccccCCCeEEeCCCCCH-H-HH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCcc
Confidence 11111245568899976532 1 10 112221 2234579999999999999999986441
Q ss_pred ---------------------CCcc--hHHHHHHHHHHHHhhh---------CCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 197 ---------------------ERYE--HLEFQRKVAQCYQMLR---------DSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 197 ---------------------d~~e--~~~~~~rv~~~y~~l~---------~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
++.+ ...+.+++.. |.+.. ...+++||+++++++|+++|.+.+.
T Consensus 143 ~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~-~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 143 HKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAA-YHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp ETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHH-HHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred ccccCCCcccccccccccccccCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 1121 2345556643 43321 1368899999999999999998774
No 37
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.73 E-value=9e-17 Score=133.86 Aligned_cols=171 Identities=18% Similarity=0.120 Sum_probs=104.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR 125 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r 125 (259)
...++++|+|+|++||||||+++.|++.++ +.++.. ++ ...+++.|+.+++++.++..... .....+..++
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~-~~~~~~~~~~ 91 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS-DLTNELVDDR 91 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCH-HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccH-HHHHHHHHHH
Confidence 456789999999999999999999999984 444432 11 11245667777777765432222 1111111221
Q ss_pred HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH-H
Q 024986 126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL-E 203 (259)
Q Consensus 126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~-~ 203 (259)
. .. ...|..||+|+++.+. .. .+++.. +......||++|||++|++++.+|+..|+..-+.. .
T Consensus 92 ~------~~-~~~~~~vIldg~~~~~-~~-------~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~ 156 (201)
T 2cdn_A 92 L------NN-PDAANGFILDGYPRSV-EQ-------AKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDV 156 (201)
T ss_dssp T------TS-GGGTTCEEEESCCCSH-HH-------HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHH
T ss_pred H------hc-ccCCCeEEEECCCCCH-HH-------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHH
Confidence 1 11 1345568999876532 11 122222 22223568999999999999999987643111122 3
Q ss_pred HHHHHHHHHHhh------hCCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQML------RDSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 204 ~~~rv~~~y~~l------~~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
+.+++...+... ....+++||+++++++++++|.+.+
T Consensus 157 ~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 157 ILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Confidence 444554433321 1246889999999999999998865
No 38
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.73 E-value=3.2e-16 Score=135.09 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=109.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW 126 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~ 126 (259)
+.++++|+|+|++||||||+++.|+++++ +.++.. +. ...+++.|+.+++++..+.........
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-------- 94 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL-------- 94 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHH--------
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHH--------
Confidence 35789999999999999999999999884 443321 21 333567888888888765433332111
Q ss_pred HHHHHHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHh-hhccCCCCCEEEEEeCCHHHHHhhcCCCCC-----
Q 024986 127 EKRSMMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKA-PEIGLLAPDSVLYLDIPPEKAAERGGYGGE----- 197 (259)
Q Consensus 127 ~~~~~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~-~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d----- 197 (259)
..+...+ ..+..+|+|+|+.+.. +. ..+.. +......||.+|+|++|++++.+|+..|..
T Consensus 95 ---~~~~~~l~~~~~~~~~ildg~p~~~~--q~------~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g 163 (243)
T 3tlx_A 95 ---SLVDEKLKTPQCKKGFILDGYPRNVK--QA------EDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSG 163 (243)
T ss_dssp ---HHHHHHTTSGGGSSEEEEESCCCSHH--HH------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT
T ss_pred ---HHHHHHHhcccccCCEEecCCCCcHH--HH------HHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccC
Confidence 0112222 2367799999876421 11 12222 223346799999999999999999876520
Q ss_pred -------------------------Cc-c-hHHHHHHHHHHHHhhh--------CCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 198 -------------------------RY-E-HLEFQRKVAQCYQMLR--------DSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 198 -------------------------~~-e-~~~~~~rv~~~y~~l~--------~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
+. + ...+.+|+..++.+.. ...++.||+++++++|+++|.+.+.
T Consensus 164 ~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 164 RIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp EEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 11 1 2345556554443321 1358899999999999999998774
No 39
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.73 E-value=2.9e-16 Score=130.74 Aligned_cols=169 Identities=17% Similarity=0.260 Sum_probs=104.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN 124 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~ 124 (259)
..++++|+|+|++||||||+++.|++.+ |+.++... .+. ++..++.+++++.++. +.+....
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~~~i~~d~~~~~~~~~~-~~~~~~~i~~~~~~g~-~~~~~~~------ 80 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---SFVHLSAGDLLRAEQGRA-GSQYGELIKNCIKEGQ-IVPQEIT------ 80 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---SCEEEEHHHHHHHHHHST-TCSCHHHHHHHHHTTC-CCCHHHH------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---CceEEeHHHHHHHHHhcc-CCHHHHHHHHHHHcCC-cCCHHHH------
Confidence 3456899999999999999999999987 44443211 122 4566777777776443 3322110
Q ss_pred HHHH-HHHHHHHHhcC-CeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCc
Q 024986 125 RWEK-RSMMEAKLKAG-TTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERY 199 (259)
Q Consensus 125 r~~~-~~~i~~~l~~g-~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~ 199 (259)
... ...+.+.+..| +.+|+|+++.+. +....++..+..||++|||++|++++.+|+..|+ .+.
T Consensus 81 -~~~l~~~i~~~l~~g~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~ 148 (203)
T 1ukz_A 81 -LALLRNAISDNVKANKHKFLIDGFPRKM-----------DQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRS 148 (203)
T ss_dssp -HHHHHHHHHHHHHTTCCEEEEETCCCSH-----------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCT
T ss_pred -HHHHHHHHHhhhccCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCC
Confidence 011 12345566666 578888875421 1111222334569999999999999999986542 111
Q ss_pred -chH-HHHHHHHHHHHh-------hhC-CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 200 -EHL-EFQRKVAQCYQM-------LRD-SSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 200 -e~~-~~~~rv~~~y~~-------l~~-~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
+.. .+.+++...+.. ... ..+++||+++++++++++|.+.+...
T Consensus 149 ~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 149 DDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp TCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 122 233333222211 122 35678999999999999999988754
No 40
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.72 E-value=7.3e-17 Score=132.33 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=101.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e-c-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R-F-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRW 126 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~-~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~ 126 (259)
.+|++|+|+|++||||||+++.|++.++ +.++.. + . +. +++.|..+++++..+.........
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~-------- 69 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRDHVAR-GTPLGERVRPIMERGDLVPDDLIL-------- 69 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH--------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHHHHHc-CChHHHHHHHHHHcCCcCCHHHHH--------
Confidence 5789999999999999999999999884 444321 1 1 22 455677777777654322221110
Q ss_pred HHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--
Q 024986 127 EKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE-- 200 (259)
Q Consensus 127 ~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e-- 200 (259)
..+.+.+..+ +|+|+++.+.. + ...+..+ ......||++|||++|++++.+|+..|. ++++
T Consensus 70 ---~~~~~~l~~~--~i~dg~~~~~~--~------~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~ 136 (186)
T 3cm0_A 70 ---ELIREELAER--VIFDGFPRTLA--Q------AEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDN 136 (186)
T ss_dssp ---HHHHHHCCSE--EEEESCCCSHH--H------HHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCC
T ss_pred ---HHHHHHhcCC--EEEeCCCCCHH--H------HHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCC
Confidence 1223344444 88998876421 1 0112221 2222358999999999999999987653 3332
Q ss_pred hHHHHHHHHHHHHh-------hhC-CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 201 HLEFQRKVAQCYQM-------LRD-SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 201 ~~~~~~rv~~~y~~-------l~~-~~~~vIDa~~s~eev~~~I~~~i 240 (259)
...+.+++...+.. ..+ ..+++||+++++++++++|.+.+
T Consensus 137 ~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 137 EETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 23455555443322 111 24889999999999999998875
No 41
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.72 E-value=4.5e-17 Score=133.67 Aligned_cols=168 Identities=18% Similarity=0.286 Sum_probs=104.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCChHHHHHHHHHhCCCCCCHH-HHHHHHHHhHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW-----RFPDRTTSVGQMISAYLSNQSHLDDH-TIHLLFSANRWE 127 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~-~~~ll~~a~r~~ 127 (259)
++++|+|+|++||||||+++.|++.++ +.++.. ..+..+++.++.+++++..+...... ...++
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l------- 74 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLL------- 74 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHH-------
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHH-------
Confidence 457999999999999999999999984 444321 12212455677777777654322211 11111
Q ss_pred HHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcc--hH
Q 024986 128 KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HL 202 (259)
Q Consensus 128 ~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e--~~ 202 (259)
...+.+. .|..||+|+++.+...+. .|...+.. ...||++|||++|++++.+|+..|+ ++.+ ..
T Consensus 75 -~~~i~~~--~~~~vi~d~~~~~~~~~~-------~~~~~~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~ 143 (194)
T 1qf9_A 75 -KNAIDAN--QGKNFLVDGFPRNEENNN-------SWEENMKD-FVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIE 143 (194)
T ss_dssp -HHHHHTS--TTCCEEEETCCCSHHHHH-------HHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHH
T ss_pred -HHHHHhc--CCCCEEEeCcCCCHHHHH-------HHHHHHhc-cCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHH
Confidence 0111221 567899999877543221 12111121 2368999999999999999986542 2222 24
Q ss_pred HHHHHHHHHHHh-------hh-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQM-------LR-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 203 ~~~~rv~~~y~~-------l~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
++.+++...+.. .. ...+++||+++++++++++|.+.+..
T Consensus 144 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 144 SIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 566666554321 11 13578999999999999999998864
No 42
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.72 E-value=4.8e-17 Score=133.94 Aligned_cols=168 Identities=20% Similarity=0.209 Sum_probs=103.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH--
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-- 129 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-- 129 (259)
..+|.+|+|+|++||||||+++.|++.+...|..+..++ ++.++..+.....+.+. ++..+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~--------~d~~~~~~~~~~~~~~~--------~r~~~~~~ 73 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD--------GDWARTTVSEGAGFTRE--------ERLRHLKR 73 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHHTTTTTTCCCCHH--------HHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee--------HHHHHHHHhhccCCChh--------hHHHHHHH
Confidence 357899999999999999999999999998888776554 34444433322223321 111111
Q ss_pred --HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC---CCCcchHHH
Q 024986 130 --SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG---GERYEHLEF 204 (259)
Q Consensus 130 --~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R---~d~~e~~~~ 204 (259)
......+..|.+||+|++.. |+. ..+++..+......|+++|||++|++++.+|+..+ ..+.+..+.
T Consensus 74 ~~~~~~~~~~~g~~vi~d~~~~----~~~----~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~ 145 (186)
T 2yvu_A 74 IAWIARLLARNGVIVICSFVSP----YKQ----ARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELEN 145 (186)
T ss_dssp HHHHHHHHHTTTCEEEEECCCC----CHH----HHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHhCCCEEEEeCccc----cHH----HHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhh
Confidence 11122346788999998542 211 01334333333457999999999999999997421 000000111
Q ss_pred HHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHH
Q 024986 205 QRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 205 ~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l 244 (259)
+..+...|... ....++||++ .++++++++|.+.+...+
T Consensus 146 ~~~~~~~y~~~-~~~~~~Id~~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 146 FTGITDPYEPP-ENPQLVLDTESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp CHHHHSCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred hhhhhhcccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 22233334322 2346899997 899999999999887654
No 43
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.71 E-value=6.7e-16 Score=131.87 Aligned_cols=168 Identities=17% Similarity=0.171 Sum_probs=105.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe----c-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR----F-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWE 127 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~----~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~ 127 (259)
.++++|+|+|++||||||+++.|+++|+ +.++... + ...+++.|+.+++++..+.........
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~--------- 81 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL--------- 81 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH---------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHH---------
Confidence 4668999999999999999999999994 4444321 1 011346677787777654333322111
Q ss_pred HHHHHHHHHh---cCCeEEEcccccchhhhhcCCCCCHHHHHhh-hccCCCCCEEEEEeCCHHHHHhhcCCCC-------
Q 024986 128 KRSMMEAKLK---AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP-EIGLLAPDSVLYLDIPPEKAAERGGYGG------- 196 (259)
Q Consensus 128 ~~~~i~~~l~---~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~-~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------- 196 (259)
..+.+.+. .+..+|+|||+.+. .+. +.+..+ ......||++|||++|++++.+|+..|.
T Consensus 82 --~~i~~~l~~~~~~~g~ildg~~~~~--~~~------~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~ 151 (233)
T 1ak2_A 82 --ELIEKNLETPPCKNGFLLDGFPRTV--RQA------EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGR 151 (233)
T ss_dssp --HHHHHHHTSGGGTTCEEEESCCCSH--HHH------HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCC
T ss_pred --HHHHHHHhcccccCcEEEeCCCCCH--HHH------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCC
Confidence 11122222 24568899987642 111 222222 2234579999999999999999986541
Q ss_pred -----------------------CCcc--hHHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 197 -----------------------ERYE--HLEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 197 -----------------------d~~e--~~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
++.+ ...+.+++.. |... . ...+++||+++++++|+++|.+.+..
T Consensus 152 ~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~-y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 152 SYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEA-YHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp EEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccccccCCCccccccccccccccCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 1222 2345555533 4331 1 13589999999999999999998876
Q ss_pred H
Q 024986 243 Q 243 (259)
Q Consensus 243 ~ 243 (259)
+
T Consensus 231 ~ 231 (233)
T 1ak2_A 231 A 231 (233)
T ss_dssp H
T ss_pred h
Confidence 5
No 44
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.70 E-value=3.9e-16 Score=127.97 Aligned_cols=174 Identities=14% Similarity=0.210 Sum_probs=94.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh---HHHH-H
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN---RWEK-R 129 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~---r~~~-~ 129 (259)
+|++|+|+|++||||||+++.|+++++..|+....+. .++.+++.....+...+......+... .++. .
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~-------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS-------FGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMA 74 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE-------HHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe-------hHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHH
Confidence 4789999999999999999999999987774333222 245555554322111000000000000 0111 1
Q ss_pred -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHh-hcCC--CCCCc---chH
Q 024986 130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAE-RGGY--GGERY---EHL 202 (259)
Q Consensus 130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~-R~~~--R~d~~---e~~ 202 (259)
..+.+.. .+..||+|+++..........+++..++... .||++|||++|++++.+ |+.. |+... +..
T Consensus 75 ~~~i~~~~-~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~ 148 (192)
T 1kht_A 75 GRKIAEMA-KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-----NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTI 148 (192)
T ss_dssp HHHHHHHH-TTSCEEEECCSEEEETTEEEESSCHHHHHHH-----CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHH
T ss_pred HHHHHhhc-cCCeEEEccceeccccccccccCcHHHHhcc-----CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHH
Confidence 2233433 3446777876531111111123443333321 48999999999999996 8875 53221 222
Q ss_pred HHHHHHHHHHHh----hhCCCeEEE-cCCCCHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQM----LRDSSWKII-DACQSIEDVEKQLKEIV 240 (259)
Q Consensus 203 ~~~~rv~~~y~~----l~~~~~~vI-Da~~s~eev~~~I~~~i 240 (259)
+...++...|.. .....+++| |.++++++++++|.+.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 149 EQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 333344444432 223456666 45577999999998865
No 45
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.70 E-value=1.6e-16 Score=133.84 Aligned_cols=158 Identities=15% Similarity=0.267 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec--CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF--PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR 129 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~--p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~ 129 (259)
+.|+|+|++||||||+++.|++++ |+.++.. ++ +. +++.|+.+++++..+........ .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~---g~~~i~~d~~~r~~~~~-~~~~g~~i~~~~~~g~~~~~~~~-----------~ 65 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKY---GIPQISTGDMLRAAVKS-GSELGKQAKDIMDAGKLVTDELV-----------I 65 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH---CCCEEEHHHHHHHHHHH-TCTTTGGGHHHHHHTCCCCHHHH-----------H
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHHHHHHHc-CChHHHHHHHHHHCCCcCCHHHH-----------H
Confidence 369999999999999999999988 4555433 21 11 23344555555543322222110 0
Q ss_pred HHHHHHHhc---CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC----------
Q 024986 130 SMMEAKLKA---GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---------- 196 (259)
Q Consensus 130 ~~i~~~l~~---g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---------- 196 (259)
..+.+.+.+ +..+|+|+|+.+. .....+......||++|||++|++++.+|+..|.
T Consensus 66 ~~i~~~l~~~~~~~~~i~dg~~~~~-----------~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~ 134 (214)
T 1e4v_A 66 ALVKERIAQEDCRNGFLLDGFPRTI-----------PQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYH 134 (214)
T ss_dssp HHHHHHHTSGGGGGCEEEESCCCSH-----------HHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEE
T ss_pred HHHHHHHhccccCCCEEEeCCCCCH-----------HHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCccc
Confidence 122233332 2468889976432 1112222233479999999999999999975431
Q ss_pred --------------------CCcc--hHHHHHHHHHHHHhhh-------C-------CCeEEEcCCCCHHHHHHHHHHHH
Q 024986 197 --------------------ERYE--HLEFQRKVAQCYQMLR-------D-------SSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 197 --------------------d~~e--~~~~~~rv~~~y~~l~-------~-------~~~~vIDa~~s~eev~~~I~~~i 240 (259)
++.+ ...+.+++.. |.+.. . ..+++||+++++++|+++|.+.+
T Consensus 135 ~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~-y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 135 VKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVE-YHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp TTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHH-HHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccCCCCCccccccccccccccCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1221 2356666643 44321 1 35889999999999999998875
No 46
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.70 E-value=2.4e-16 Score=137.12 Aligned_cols=164 Identities=18% Similarity=0.214 Sum_probs=105.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
.++++|+|+|++||||||+++.|++.|...|+.++.+. ++.++..+.. +.+.....+..+.+ ..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~--------~D~~~~~l~~---~~~~~e~~~~~~~~----~~i 66 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG--------SDLIRESFPV---WKEKYEEFIKKSTY----RLI 66 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC--------THHHHTTSSS---CCGGGHHHHHHHHH----HHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC--------chHHHHHHhh---hhHHHHHHHHHHHH----HHH
Confidence 46789999999999999999999999987788766433 1333322221 22222222222111 234
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY 212 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y 212 (259)
.+.+.. ..||+|+.++..- + .+.+..+......|+++|||++|++++.+|+..|+... +.+.++++.+.|
T Consensus 67 ~~~l~~-~~vIiD~~~~~~~-~-------~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~-~~~~l~~~~~~~ 136 (260)
T 3a4m_A 67 DSALKN-YWVIVDDTNYYNS-M-------RRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKI-PNEVIKKMYEKF 136 (260)
T ss_dssp HHHHTT-SEEEECSCCCSHH-H-------HHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSS-CHHHHHHHHHHC
T ss_pred HHHhhC-CEEEEeCCcccHH-H-------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCC-CHHHHHHHHHHh
Confidence 556666 7899998654211 1 12233333345678999999999999999998765332 346666666666
Q ss_pred Hhhh-----CCCeEEEcCCC--CHHHHHHHHHHHHH
Q 024986 213 QMLR-----DSSWKIIDACQ--SIEDVEKQLKEIVL 241 (259)
Q Consensus 213 ~~l~-----~~~~~vIDa~~--s~eev~~~I~~~i~ 241 (259)
.... +...++||++. +++++++.|.+.+.
T Consensus 137 e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 137 DEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp CCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred cCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 5432 23568999976 89999998887664
No 47
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.69 E-value=1.1e-16 Score=131.75 Aligned_cols=174 Identities=12% Similarity=-0.010 Sum_probs=99.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-H
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-S 130 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~ 130 (259)
+.++++|+|+|++||||||+++.|+++++ +.++. .+.+++.+.......+...........+..+ .
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~----------~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLR---LPLLS----------KDAFKEVMFDGLGWSDREWSRRVGATAIMMLYH 68 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEE----------HHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcC---CeEec----------HHHHHHHHHHhcCccchHHHHHhhHHHHHHHHH
Confidence 45789999999999999999999999984 43332 1222222211101111111111111122322 3
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCc-c--hHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERY-E--HLEF 204 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~-e--~~~~ 204 (259)
.+.+.+..|..||+|+++ +... . ...+..+......|+++|||++|++++.+|+..|. ++. + ..++
T Consensus 69 ~~~~~l~~g~~vi~d~~~-~~~~-~------~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~ 140 (193)
T 2rhm_A 69 TAATILQSGQSLIMESNF-RVDL-D------TERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRS 140 (193)
T ss_dssp HHHHHHHTTCCEEEEECC-CHHH-H------HHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------C
T ss_pred HHHHHHhCCCeEEEecCC-CCHH-H------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCcc
Confidence 456677788899999886 2110 0 01122233345678999999999999999986542 232 1 1233
Q ss_pred HH--HHHHHHHh---hhC-CCeEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 024986 205 QR--KVAQCYQM---LRD-SSWKIIDACQSIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 205 ~~--rv~~~y~~---l~~-~~~~vIDa~~s~eev~~~I~~~i~~~l~~ 246 (259)
.. .+...|.. +.. ...++||++.+.++++++|.+.|.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~ 188 (193)
T 2rhm_A 141 PADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS 188 (193)
T ss_dssp HHHHHHHHHSCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence 33 23333432 222 36789999887667777777777666543
No 48
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.69 E-value=6.6e-16 Score=129.87 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=103.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR- 129 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~- 129 (259)
..+|++|+|+|++||||||+++.|++.+. ..|+.+..++ ++.++..+.....+. .+++..++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~--------~d~~r~~l~~~~~~~--------~~~r~~~~~ 85 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD--------GDNIRFGLNKDLGFS--------EADRNENIR 85 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC--------HHHHTTTTTTTCCSS--------HHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC--------ChHHhhhhccccCCC--------HHHHHHHHH
Confidence 45789999999999999999999999998 6677666554 344433332111121 12222221
Q ss_pred ---HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhc------cCCCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 024986 130 ---SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEI------GLLAPDSVLYLDIPPEKAAERGGYGGERYE 200 (259)
Q Consensus 130 ---~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~------~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e 200 (259)
..+.+.+..|.+||+| |. + +|+. +.+++..+.. ..+.|+++|||++|++++.+|+..
T Consensus 86 ~~~~~~~~~l~~g~~VI~d-~~-~--~~~~----~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r------ 151 (211)
T 1m7g_A 86 RIAEVAKLFADSNSIAITS-FI-S--PYRK----DRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPK------ 151 (211)
T ss_dssp HHHHHHHHHHHTTCEEEEE-CC-C--CCHH----HHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTT------
T ss_pred HHHHHHHHHHHCCCEEEEe-cC-C--ccHH----HHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhH------
Confidence 2345667789999999 44 2 3331 1245555443 346799999999999999999621
Q ss_pred hHHHHHHHHHHHHhhh----------CCCeEEEcCCC-CHHHHHHHHHHHHHH
Q 024986 201 HLEFQRKVAQCYQMLR----------DSSWKIIDACQ-SIEDVEKQLKEIVLD 242 (259)
Q Consensus 201 ~~~~~~rv~~~y~~l~----------~~~~~vIDa~~-s~eev~~~I~~~i~~ 242 (259)
.++.+.+..|..+. ....++||++. ++++++++|.+.+..
T Consensus 152 --~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 152 --GLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp --CHHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 12233333332110 12358999987 999999999998864
No 49
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.69 E-value=1.2e-15 Score=128.25 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=100.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+.|+|+|++||||||+++.|+++++ +.++.. +. ...+++.++.+++++..+......... .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 66 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI-----------G 66 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHH-----------H
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------H
Confidence 4699999999999999999999884 444322 11 112456677777766554333321111 1
Q ss_pred HHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHH-hhhccCCCCCEEEEEeCCHHHHHhhcCCCC----------
Q 024986 131 MMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCK-APEIGLLAPDSVLYLDIPPEKAAERGGYGG---------- 196 (259)
Q Consensus 131 ~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~-~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---------- 196 (259)
.+...+ ..+..+|+|+|+.+... . ..+. .+......||++|||++|++++.+|+..|.
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~-~-------~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~ 138 (216)
T 3fb4_A 67 IVHERLSKDDCQKGFLLDGFPRTVAQ-A-------DALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYH 138 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHH-H-------HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEE
T ss_pred HHHHHHhcccCCCcEEEeCCCCCHHH-H-------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccc
Confidence 112222 23667899988764211 0 1122 222234569999999999999999987760
Q ss_pred ----------------C----C--cchHHHHHHHHHHHHhh-------h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 197 ----------------E----R--YEHLEFQRKVAQCYQML-------R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 197 ----------------d----~--~e~~~~~~rv~~~y~~l-------~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
. + .....+.+++..+.... . ...+++||+++++++|+++|.+.+.+
T Consensus 139 ~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 139 TIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp TTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred cccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 0 0 11123444443222221 1 13589999999999999999998764
No 50
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.69 E-value=9.9e-16 Score=128.80 Aligned_cols=164 Identities=16% Similarity=0.151 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----ec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----RF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+.|+|+|++||||||+++.|+++++ +.++.. +. ...+++.++.+++++..+......... .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 66 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI-----------G 66 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHH-----------H
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------H
Confidence 4689999999999999999999874 444322 11 112456777777777654333322111 0
Q ss_pred HHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC------------
Q 024986 131 MMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG------------ 195 (259)
Q Consensus 131 ~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R------------ 195 (259)
.+...+ ..+..+|+|+|+.+..... .+...+......||++|||++|++++.+|+..|
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~-------~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~ 139 (216)
T 3dl0_A 67 IVKERLGKDDCERGFLLDGFPRTVAQAE-------ALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHL 139 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHHHH-------HHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEET
T ss_pred HHHHHHhcccccCCEEEeCCCCCHHHHH-------HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCcccc
Confidence 111222 2367799999876421110 111122223457999999999999999998766
Q ss_pred ---------------------CCCcchHHHHHHHHHHHHh-h---h-----CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 196 ---------------------GERYEHLEFQRKVAQCYQM-L---R-----DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 196 ---------------------~d~~e~~~~~~rv~~~y~~-l---~-----~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+. ....+.+++. .|.+ . . ...+++||+++++++|.++|.+.+..
T Consensus 140 ~~~pp~~~~~~~~~~~~l~~r~~d-~~e~i~~rl~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 140 VFNPPKTPGICDKDGGELYQRADD-NEETVTKRLE-VNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp TTBCCSSTTBCTTTCCBEECCTTC-SHHHHHHHHH-HHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred ccCCCcccCccccccccccCCCCC-CHHHHHHHHH-HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 111 1123344443 2322 1 1 13689999999999999999998764
No 51
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.69 E-value=7e-16 Score=131.04 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=103.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE----e--cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW----R--FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR 125 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~----~--~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r 125 (259)
+.++++|+|+|++||||||+++.|++.++ +.++.. + .+. +++.|..+++++..+......... .+..++
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~-~~~~g~~i~~~~~~g~~~~~~~~~-~~~~~~ 78 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLR-GTEIGVLAKAFIDQGKLIPDDVMT-RLALHE 78 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHH-TCHHHHHHHHHHTTTCCCCHHHHH-HHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhc-CChHHHHHHHHHHcCCcCCHHHHH-HHHHHH
Confidence 35678999999999999999999999884 443321 1 112 456688888887654333322111 111111
Q ss_pred HHHHHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-----C---
Q 024986 126 WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG-----E--- 197 (259)
Q Consensus 126 ~~~~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~-----d--- 197 (259)
+... .+..+|+|+|+.+ .++. +.+. ....||++|||++|++++.+|+..|. +
T Consensus 79 ------l~~~--~~~~~vid~~~~~--~~~~------~~l~----~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y 138 (227)
T 1zd8_A 79 ------LKNL--TQYSWLLDGFPRT--LPQA------EALD----RAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVY 138 (227)
T ss_dssp ------HHTC--TTSCEEEESCCCS--HHHH------HHHH----TTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEE
T ss_pred ------Hhcc--cCCCEEEeCCCCC--HHHH------HHHH----HhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCcc
Confidence 1110 3556888998753 2221 1121 22578999999999999999987541 1
Q ss_pred ----------------------Ccc-h-HHHHHHHHHHHHhhh-------C--CCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 198 ----------------------RYE-H-LEFQRKVAQCYQMLR-------D--SSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 198 ----------------------~~e-~-~~~~~rv~~~y~~l~-------~--~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
+.+ . ..+.+++ ..|.+.. + ..+++||++ ++++|+++|.+.+...+
T Consensus 139 ~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~-~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~ 216 (227)
T 1zd8_A 139 NIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRL-KAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV 216 (227)
T ss_dssp ETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH-HHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred ccccCCCCcccccccccccccCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence 112 2 2344444 4454321 1 358999999 99999999999987665
Q ss_pred hh
Q 024986 245 TA 246 (259)
Q Consensus 245 ~~ 246 (259)
..
T Consensus 217 ~~ 218 (227)
T 1zd8_A 217 PQ 218 (227)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 52
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.67 E-value=1.3e-15 Score=126.96 Aligned_cols=163 Identities=12% Similarity=0.097 Sum_probs=97.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
.++++|+|.|++||||||+++.|++.++ +.++..+.-. .. ..... ...+..+.... +...+..+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~--~~--~~~~~-~~~g~~~~~~~--------~~~~~~~l 79 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALH--PP--ENIRK-MSEGIPLTDDD--------RWPWLAAI 79 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGC--CH--HHHHH-HHHTCCCCHHH--------HHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCc--ch--hhHHH-HhcCCCCCchh--------hHHHHHHH
Confidence 4578999999999999999999999984 4333221110 00 11111 12122222211 11112233
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY 212 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y 212 (259)
...+..|..||+|..... ..+...+....+.|+++|||++|++++.+|+..|.......+..++..+.+
T Consensus 80 ~~~~~~~~~vivd~~~~~-----------~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~ 148 (202)
T 3t61_A 80 GERLASREPVVVSCSALK-----------RSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETL 148 (202)
T ss_dssp HHHHTSSSCCEEECCCCS-----------HHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEECCCCC-----------HHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhc
Confidence 344467778888865431 122222333346688999999999999999987643332334443333333
Q ss_pred Hhhh-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 213 QMLR-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 213 ~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
..+. ....++||++.++++++++|.+.+..
T Consensus 149 ~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 149 EDPRGEVRTVAVDVAQPLAEIVREALAGLAR 179 (202)
T ss_dssp CCCTTSTTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3222 23678999999999999999998864
No 53
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.67 E-value=2.6e-15 Score=120.66 Aligned_cols=164 Identities=13% Similarity=0.023 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCC-CCCHHHHHHHHHHhH--HHH-HHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQS-HLDDHTIHLLFSANR--WEK-RSM 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~-~~~~~~~~ll~~a~r--~~~-~~~ 131 (259)
++|+|+|++||||||+++.| +.+ |+.++.+ ++.+++.+...+ ............... ... ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~---g~~~i~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER---GAKVIVM---------SDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARL 68 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT---TCEEEEH---------HHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC---CCcEEEH---------hHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence 68999999999999999999 555 5555432 355555443221 111111100000011 011 133
Q ss_pred HHHHH--hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC---cchHHHHH
Q 024986 132 MEAKL--KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER---YEHLEFQR 206 (259)
Q Consensus 132 i~~~l--~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~~~~~~ 206 (259)
+.+.+ ..+..||+|++ .+. .....+......|+++|||++|++++.+|+..|+.. ....++.+
T Consensus 69 ~~~~l~~~~~~~vi~dg~-~~~-----------~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 136 (179)
T 3lw7_A 69 CVEELGTSNHDLVVFDGV-RSL-----------AEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIR 136 (179)
T ss_dssp HHHHHCSCCCSCEEEECC-CCH-----------HHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHH
T ss_pred HHHHHHhcCCCeEEEeCC-CCH-----------HHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHH
Confidence 44555 56788999976 211 112222222347899999999999999999876421 12234444
Q ss_pred HHHH-HHHhh---hCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 207 KVAQ-CYQML---RDSSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 207 rv~~-~y~~l---~~~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
++.. .+... .....++||++.+++++.++|.+.+...+
T Consensus 137 r~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 137 RDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp HHHHHHHHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred HHHhhhccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 4321 11111 11234778888899999999999988765
No 54
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.66 E-value=5.6e-16 Score=126.51 Aligned_cols=173 Identities=14% Similarity=0.014 Sum_probs=95.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH-HHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK-RSMM 132 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~-~~~i 132 (259)
++++|+|+|++||||||+++.|+++++ +.++ .. ....|..+++++. .+... . .....+.+. ...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i--~d---~~~~g~~i~~~~~-~g~~~-~----~~~~~~~~~~~~~i 69 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP---GSFV--FE---PEEMGQALRKLTP-GFSGD-P----QEHPMWIPLMLDAL 69 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST---TCEE--CC---THHHHHHHHHTST-TCCSC-G----GGSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC---CCEE--Ec---hhhhHHHHHHhCc-cccch-h----hhhHHHHHHHHHHH
Confidence 678999999999999999999999885 3333 11 2355777777665 21111 0 000000011 1233
Q ss_pred HHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 133 EAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 133 ~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
.+.+.. |.+||+|+.+.+.-.+. ++...+.. ...+-..|||++|++++.+|+..|..+....+.++++.+.
T Consensus 70 ~~~l~~~g~~vi~d~~~~~~~~~~-------~~~~~l~~-~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~ 141 (183)
T 2vli_A 70 QYASREAAGPLIVPVSISDTARHR-------RLMSGLKD-RGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNE 141 (183)
T ss_dssp HHHHHHCSSCEEEEECCCCHHHHH-------HHHHHHHH-TTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEeeeccCHHHHH-------HHHHHHHh-cCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHh
Confidence 444554 77888996543221111 12222221 1223366999999999999998765332122344444444
Q ss_pred HHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHHhhhhcC
Q 024986 212 YQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQVTACKKG 250 (259)
Q Consensus 212 y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l~~~~~~ 250 (259)
|..+ .... +||++ .++++++++|.+.+...+...+.|
T Consensus 142 ~~~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~~~~~~~ 179 (183)
T 2vli_A 142 LRGE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTLAPPPQG 179 (183)
T ss_dssp HTSG-GGCS-EEECTTCCHHHHHHHHHHHHTCCCCCC---
T ss_pred hccc-ccce-EeeCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 4433 3344 99997 899999999999887666544444
No 55
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.65 E-value=5.4e-16 Score=132.75 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE----Eec-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL----WRF-PDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK 128 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~----~~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~ 128 (259)
.-+.+.|.|+||||||||++.|+++++ +..+. +++ ...++++|+.+++++..+..+.+....-+ ..++
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~l-l~~~--- 79 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGL-VKER--- 79 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHH-HHHH---
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHH-HHHH---
Confidence 457789999999999999999999994 44332 121 22367889999998887654444322111 1111
Q ss_pred HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC------------
Q 024986 129 RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG------------ 196 (259)
Q Consensus 129 ~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~------------ 196 (259)
+.. ...+..+|+|+||.+. .| +..+......||++|+|++|++++.+|+..|.
T Consensus 80 ---l~~-~~~~~g~ILDGfPRt~--~Q---------a~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~ 144 (230)
T 3gmt_A 80 ---LKE-ADCANGYLFDGFPRTI--AQ---------ADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVK 144 (230)
T ss_dssp ---HHS-GGGTTCEEEESCCCSH--HH---------HHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETT
T ss_pred ---HhC-cccCCCeEecCCCCcH--HH---------HHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCccccc
Confidence 111 0113357889998752 22 22233445679999999999999999987651
Q ss_pred ------------------CCcc-hHH-HHHHH----------HHHHHhhh---------CCCeEEEcCCCCHHHHHHHHH
Q 024986 197 ------------------ERYE-HLE-FQRKV----------AQCYQMLR---------DSSWKIIDACQSIEDVEKQLK 237 (259)
Q Consensus 197 ------------------d~~e-~~~-~~~rv----------~~~y~~l~---------~~~~~vIDa~~s~eev~~~I~ 237 (259)
.|-+ +.+ +.+|+ .+.|.+.. ...++.||+++++|+|+++|.
T Consensus 145 ~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~ 224 (230)
T 3gmt_A 145 FNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVR 224 (230)
T ss_dssp TBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC------------
T ss_pred CCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHH
Confidence 0111 122 22332 23444321 135789999999999999999
Q ss_pred HHHH
Q 024986 238 EIVL 241 (259)
Q Consensus 238 ~~i~ 241 (259)
+++.
T Consensus 225 ~~l~ 228 (230)
T 3gmt_A 225 RAQV 228 (230)
T ss_dssp ----
T ss_pred HHHh
Confidence 8775
No 56
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.61 E-value=2e-14 Score=116.58 Aligned_cols=162 Identities=7% Similarity=-0.005 Sum_probs=86.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC-----CCCCHHHHHHHHHHhHHHH-
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ-----SHLDDHTIHLLFSANRWEK- 128 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~-----~~~~~~~~~ll~~a~r~~~- 128 (259)
+++|+|.|++||||||+++.|++. ..|+.++ . .+.++..+... ..+.......+. ..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~--~~~~~~i--~--------~d~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 64 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK--NPGFYNI--N--------RDDYRQSIMAHEERDEYKYTKKKEGIVT-----GMQ 64 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--STTEEEE--C--------HHHHHHHHTTSCCGGGCCCCHHHHHHHH-----HHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh--cCCcEEe--c--------HHHHHHHhhCCCccchhhhchhhhhHHH-----HHH
Confidence 468999999999999999999983 1233222 2 13444443321 124333222111 11
Q ss_pred HHHHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 024986 129 RSMMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQ 205 (259)
Q Consensus 129 ~~~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~ 205 (259)
...+.+.+ ..|..||+|+++.+.. +. +.+..+......|..+|||++|++++.+|+..|+....+.+.+
T Consensus 65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~-~~-------~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i 136 (181)
T 1ly1_A 65 FDTAKSILYGGDSVKGVIISDTNLNPE-RR-------LAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVL 136 (181)
T ss_dssp HHHHHHHHTSCSSCCEEEECSCCCSHH-HH-------HHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHH
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHH-HH-------HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHH
Confidence 13456677 7789999999876532 21 1222222223346789999999999999998875333345677
Q ss_pred HHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 206 ~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+++.+.|........++||++.+ ++|..+|...+..
T Consensus 137 ~~~~~~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 137 RSMYKSMREYLGLPVYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp HHHHHHHHHHHTCCCC---------------------
T ss_pred HHHHHHhhccCCCCccccCCCCC-ceeeehhhhhhhc
Confidence 77777787764434445898874 7787777766654
No 57
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.59 E-value=6.7e-15 Score=138.91 Aligned_cols=170 Identities=14% Similarity=0.151 Sum_probs=114.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
...|++|+|+|.|||||+|+++.|.+.|+.+|+.|+.+.+|.. +.. .. .+ . .|+
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~-----~E~----~~--~y---------l-~R~----- 93 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSD-----EEL----ER--PP---------Q-WRF----- 93 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCH-----HHH----TS--CT---------T-HHH-----
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhc----cC--Ch---------h-hhH-----
Confidence 3678999999999999999999999999999999988888761 111 11 11 0 121
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCC-CCHH----HHHh---hh---ccCCCCCEEEEEeCCHHHHHhhcCCCCC---
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKG-IDIE----WCKA---PE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--- 197 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~g-l~~~----~~~~---~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~d--- 197 (259)
+...-..|.+||+|||+|+...+....| ++.+ ++.. ++ ...+.|++.|||++|+++..+|+..|.+
T Consensus 94 ~~~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~ 173 (500)
T 3czp_A 94 WRRLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQ 173 (500)
T ss_dssp HHHCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC--------
T ss_pred HHhCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 1112257999999999999998776433 4422 2322 22 3557899999999999999999987632
Q ss_pred --------CcchHHHHHHHHHHHHhhh---C---CCeEEEcCCC---CHHHHHHHHHHHHHHHHhhh
Q 024986 198 --------RYEHLEFQRKVAQCYQMLR---D---SSWKIIDACQ---SIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 198 --------~~e~~~~~~rv~~~y~~l~---~---~~~~vIDa~~---s~eev~~~I~~~i~~~l~~~ 247 (259)
.++..++......+|.... + .+|++||++. ....|.+.|.+.|...+...
T Consensus 174 k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l~~~ 240 (500)
T 3czp_A 174 HSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALATK 240 (500)
T ss_dssp -----CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 1223344444444444421 1 4899999985 56788888888888777633
No 58
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.56 E-value=1.1e-14 Score=117.20 Aligned_cols=157 Identities=16% Similarity=0.103 Sum_probs=84.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEAK 135 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~~ 135 (259)
+.|+|+|++||||||+++.|+++++ +.++..+... ....|..+++++... +.. .|. . ....+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~-~~~~g~~~~~~~~~~---~~~----~~~--~--~~~~~l~~ 65 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEV-QKREGLSIPQIFEKK---GEA----YFR--K--LEFEVLKD 65 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHH-HHHHTSCHHHHHHHS---CHH----HHH--H--HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHH-HHHcCCCHHHHHHHh---ChH----HHH--H--HHHHHHHH
Confidence 4799999999999999999999984 4444322110 000111122222111 000 010 0 01122334
Q ss_pred Hh-cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh
Q 024986 136 LK-AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM 214 (259)
Q Consensus 136 l~-~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~ 214 (259)
+. .+.+||.|+.- .. +...+...+. .+|++|||++|++++.+|+..|.++....++.+++.+.|..
T Consensus 66 l~~~~~~Vi~~g~~---~~------~~~~~~~~l~----~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~ 132 (168)
T 2pt5_A 66 LSEKENVVISTGGG---LG------ANEEALNFMK----SRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEE 132 (168)
T ss_dssp HTTSSSEEEECCHH---HH------TCHHHHHHHH----TTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHH
T ss_pred HhccCCeEEECCCC---Ee------CCHHHHHHHH----cCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHH
Confidence 44 56777775321 00 1112222222 37899999999999999998754332100112223333322
Q ss_pred h----hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 215 L----RDSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 215 l----~~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
. ....+++ |++.++++++++|.+.+.
T Consensus 133 ~~~~~~~~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 133 RRKIYSKADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp HHHHHTTSSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEE-CCCCCHHHHHHHHHHHHH
Confidence 1 1145666 777999999999998764
No 59
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.54 E-value=2.8e-14 Score=116.57 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=89.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH-
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM- 131 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~- 131 (259)
.+|.+|+|+|++||||||+++.|++.+...|++++.++ ++.++..+.....+.. .++..+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d--------~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 66 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD--------GDNIRQGLNKNLGFSP--------EDREENVRRI 66 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHTTTTTTTCCSSH--------HHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC--------ChHHHHHHhhcccccc--------ccHHHHHHHH
Confidence 46899999999999999999999999977788777554 3333332222111221 111111111
Q ss_pred --HHHHH-hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchH-----H
Q 024986 132 --MEAKL-KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHL-----E 203 (259)
Q Consensus 132 --i~~~l-~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~-----~ 203 (259)
....+ ..|.+++.+ ++. . |.. ..+++..+......||++|||++|++++.+|+..+. ++.. .
T Consensus 67 ~~~~~~~~~~~~~~~~~-~~~-~--~~~----~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~--~~~~~~~~~~ 136 (179)
T 2pez_A 67 AEVAKLFADAGLVCITS-FIS-P--YTQ----DRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGL--YKKARAGEIK 136 (179)
T ss_dssp HHHHHHHHHTTCEEEEE-CCC-C--CHH----HHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSH--HHHHHTTSSC
T ss_pred HHHHHHHHHCCCEEEEe-cCC-c--chH----HHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhh--HHHHhccccc
Confidence 11112 456666554 221 1 110 012333332223478999999999999999986530 0000 0
Q ss_pred HHHHHHHHHHhhhCCCeEEEcC-CCCHHHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQMLRDSSWKIIDA-CQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 204 ~~~rv~~~y~~l~~~~~~vIDa-~~s~eev~~~I~~~i~~ 242 (259)
.+..+...|+....+. ++||+ +.+++++.++|.+.+..
T Consensus 137 ~~~~~~~~~~~~~~ad-~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 137 GFTGIDSEYEKPEAPE-LVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp SCBTTTBCCCCCSSCS-EEEETTTSCHHHHHHHHHHHHHH
T ss_pred ccccCCccccCCCCCc-EEEECCCCCHHHHHHHHHHHHHH
Confidence 0000111121111123 45554 57999999999988753
No 60
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.53 E-value=5.6e-15 Score=139.40 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=113.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
..+++|+|||.|||||+|++++|.+.|+.+|+.|+.+.+|.. +.. .. .+ + .|+.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~-----~E~----~~--~y---------l-~R~~----- 351 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTE-----EER----AQ--PY---------L-WRFW----- 351 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCH-----HHH----TS--CT---------T-HHHH-----
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhh----cc--hH---------H-HHHH-----
Confidence 578999999999999999999999999999999998888861 110 11 11 0 1211
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCC-CC-HH------HHHhhh---ccCCCCCEEEEEeCCHHHHHhhcCCCC---C-
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKG-ID-IE------WCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGG---E- 197 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~g-l~-~~------~~~~~~---~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d- 197 (259)
...-..|.+||+|||+|+...+....| .+ .+ ++..++ ...+.|++.|||++|+++..+|+..|. +
T Consensus 352 ~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k 431 (500)
T 3czp_A 352 RHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYK 431 (500)
T ss_dssp TTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCT
T ss_pred HhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcc
Confidence 111147999999999999987765333 23 22 222232 344679999999999999999987541 1
Q ss_pred -------CcchH----HHHHHHHHHHHhhh--CCCeEEEcCCC---CHHHHHHHHHHHHHHHHhh
Q 024986 198 -------RYEHL----EFQRKVAQCYQMLR--DSSWKIIDACQ---SIEDVEKQLKEIVLDQVTA 246 (259)
Q Consensus 198 -------~~e~~----~~~~rv~~~y~~l~--~~~~~vIDa~~---s~eev~~~I~~~i~~~l~~ 246 (259)
.++.. +|++.....+.... ..+|++|+++. ....|.+.|.+.|...|..
T Consensus 432 ~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l~~ 496 (500)
T 3czp_A 432 RYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAYKK 496 (500)
T ss_dssp TSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHHhc
Confidence 12222 34333333332222 25899999985 5678888888888888753
No 61
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.52 E-value=7.2e-14 Score=135.10 Aligned_cols=166 Identities=20% Similarity=0.236 Sum_probs=102.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH---
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR--- 129 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~--- 129 (259)
.+|++|+|+|++||||||+++.|+++|...|+.++.++ ++.++..+.....+.+. +|.+.+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD--------gD~iR~~L~~~~~fs~~--------dree~~r~i 113 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD--------GDNIRQGLNKNLGFSPE--------DREENVRRI 113 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES--------HHHHTTTTTTTCCSSHH--------HHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec--------hHHhhhccCccccCChh--------hhHHHHHHH
Confidence 37899999999999999999999999988888776654 34555443322223321 121111
Q ss_pred -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC---CCcchHHHH
Q 024986 130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG---ERYEHLEFQ 205 (259)
Q Consensus 130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~ 205 (259)
..++..+..|.+||+| +. + .|+. +.+++..+......|+++|||++|++++.+|+.++. .+.......
T Consensus 114 ~eva~~~l~~G~iVI~d-~~-s--~~~~----~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~ 185 (630)
T 1x6v_B 114 AEVAKLFADAGLVCITS-FI-S--PYTQ----DRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF 185 (630)
T ss_dssp HHHHHHHHHTTCEEEEE-CC-C--CCHH----HHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----C
T ss_pred HHHHHHHHhCCCEEEEe-Cc-h--hhHH----HHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHH
Confidence 2234556789999988 22 1 1221 123444444444568999999999999999987420 000000011
Q ss_pred HHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 206 ~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~ 243 (259)
..+...|+... ..-++||++ .++++++++|.+.+...
T Consensus 186 ~~~~~~Ye~p~-~~dlvIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 186 TGIDSEYEKPE-APELVLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp BTTTBCCCCCS-SCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred HHhhhhhcccC-CCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence 11223333221 234789986 69999999999998764
No 62
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.52 E-value=7.1e-13 Score=110.31 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=91.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
.+|.+|+|.|++||||||+++.|+..+ |..++..... ... ...+.. ..+..+........+ ...+ ..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~--~~~--~~~~~~-~~g~~~~~~~~~~~~--~~~~--~~~ 94 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAF--HSP--ENIATM-QRGIPLTDEDRWPWL--RSLA--EWM 94 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGG--SCH--HHHHHH-HTTCCCCHHHHHHHH--HHHH--HHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccc--ccH--HHHHHH-hcCCCCCCcccccHH--HHHH--HHH
Confidence 468999999999999999999999988 4432221110 011 111121 112122221111000 1111 223
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY 212 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y 212 (259)
...+..|..+|+|..... ......+ .....+..+|||++|++++.+|+..|..+....+..+...+.+
T Consensus 95 ~~~~~~g~~viid~~~~~-----------~~~~~~l-~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~ 162 (200)
T 4eun_A 95 DARADAGVSTIITCSALK-----------RTYRDVL-REGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATL 162 (200)
T ss_dssp HHHHHTTCCEEEEECCCC-----------HHHHHHH-TTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHC
T ss_pred HHHHhcCCCEEEEchhhh-----------HHHHHHH-HHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 344566777777753221 1111111 2223367899999999999999987754433222222222222
Q ss_pred Hhhh-CCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 213 QMLR-DSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 213 ~~l~-~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
..+. +...++||++.++++++++|.+.+.
T Consensus 163 ~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 163 EALEPDESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp CCCCTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred CCCCCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence 2221 1357899999999999999998875
No 63
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.51 E-value=5.4e-13 Score=112.24 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=94.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHHh-----CCCCCCHHHHH-H
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYLS-----NQSHLDDHTIH-L 119 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l~-----~~~~~~~~~~~-l 119 (259)
.++++|+|+|++||||||+++.|++ + |+.++..+ +|. ......+.+.+. ..+.++..... +
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~-l---g~~~id~D~~~~~~~~~~--~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~ 75 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD-L---GINVIDADIIARQVVEPG--APALHAIADHFGANMIAADGTLQRRALRER 75 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHTTSTT--CTHHHHHHHHHCGGGBCTTSCBCHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-c---CCEEEEccHHHHHHhcCC--hHHHHHHHHHhHHHHcCCCCCCCHHHHHHH
Confidence 4678999999999999999999987 4 66655431 232 222233333321 11234443222 2
Q ss_pred HHH-HhHHHHHH-HHHHH--------Hh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHH
Q 024986 120 LFS-ANRWEKRS-MMEAK--------LK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEK 187 (259)
Q Consensus 120 l~~-a~r~~~~~-~i~~~--------l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~ 187 (259)
+|. .+++..++ .+.|. +. .+..+|+|.... +. ..| ...||++|||++|+++
T Consensus 76 ~f~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l----~~------~~~-------~~~~d~vi~l~~~~e~ 138 (218)
T 1vht_A 76 IFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLL----VE------NSL-------YKKANRVLVVDVSPET 138 (218)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTT----TT------TTG-------GGGCSEEEEEECCHHH
T ss_pred HhCCHHHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeee----ec------cCc-------cccCCEEEEEECCHHH
Confidence 222 22222221 12222 22 244566654211 11 011 2358999999999999
Q ss_pred HHhhcCCCCCCcchHHHHHHHHH---HH--HhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 024986 188 AAERGGYGGERYEHLEFQRKVAQ---CY--QMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 188 ~~~R~~~R~d~~e~~~~~~rv~~---~y--~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~ 245 (259)
+.+|+..|+. +...++.+++.. .| ...++ ++||++.+++++.++|.+.+...+.
T Consensus 139 ~~~Rl~~R~~-~~~~~~~~~~~~~~~~~~~~~~ad---~vId~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 139 QLKRTMQRDD-VTREHVEQILAAQATREARLAVAD---DVIDNNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp HHHHHHHHHT-CCHHHHHHHHHHSCCHHHHHHHCS---EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHHhcCChHHHHHhCC---EEEECCCCHHHHHHHHHHHHHHHHH
Confidence 9999876522 222233444332 12 22232 6899988999999999999887664
No 64
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.49 E-value=3.3e-12 Score=103.52 Aligned_cols=164 Identities=14% Similarity=0.101 Sum_probs=90.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMM 132 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i 132 (259)
.+|.+|+|.|++||||||+++.|++.+ |..++...... . ...++... .+..+........+ ...+ ..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~--~--~~~~~~~~-~g~~~~~~~~~~~~--~~~~--~~~ 73 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLH--P--RRNIEKMA-SGEPLNDDDRKPWL--QALN--DAA 73 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGC--C--HHHHHHHH-TTCCCCHHHHHHHH--HHHH--HHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCcccc--c--hHHHHHhh-cCcCCCccccccHH--HHHH--HHH
Confidence 368899999999999999999999987 44333211111 1 11122211 12122221100000 1111 223
Q ss_pred HHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 133 EAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 133 ~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
...+..|..||+|..... ..+...+.. . .++ .+|||++|++++.+|+..|+.........+...+.
T Consensus 74 ~~~~~~~~~~vi~~~~~~-----------~~~~~~l~~-~-~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 140 (175)
T 1knq_A 74 FAMQRTNKVSLIVCSALK-----------KHYRDLLRE-G-NPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFET 140 (175)
T ss_dssp HHHHHHCSEEEEECCCCS-----------HHHHHHHHT-T-CTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEeCchH-----------HHHHHHHHh-c-CCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHh
Confidence 444556777777743211 111111221 1 246 79999999999999998775433222332222222
Q ss_pred HHhh--hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 212 YQML--RDSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 212 y~~l--~~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
|..+ .+...++||++.++++++++|.+.+.
T Consensus 141 ~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 141 LQEPGADETDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp CCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhCcccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 2222 12357899999999999999988763
No 65
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=1.6e-12 Score=108.00 Aligned_cols=165 Identities=11% Similarity=0.031 Sum_probs=89.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR- 129 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~- 129 (259)
.+.++.+|+|.|++||||||+++.|++.++ +.++.. .+.+.... +..+..... .+....+...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~---------d~~~~~~~--g~~i~~~~~--~~~~~~~~~~e 84 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDL---------DWYIEERF--HKTVGELFT--ERGEAGFRELE 84 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEH---------HHHHHHHH--TSCHHHHHH--HHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcc---------hHHHHHHh--CCcHHHHHH--hcChHHHHHHH
Confidence 346788999999999999999999999994 444321 12222211 111111000 0000011111
Q ss_pred -HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC-CCCCCc-----chH
Q 024986 130 -SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG-YGGERY-----EHL 202 (259)
Q Consensus 130 -~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~-~R~d~~-----e~~ 202 (259)
..+......+.+||..+.- ... ..+....+ ..++.+|||++|++++.+|+. .+..|- ...
T Consensus 85 ~~~l~~l~~~~~~vi~~ggg---~~~------~~~~~~~l----~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~ 151 (199)
T 3vaa_A 85 RNMLHEVAEFENVVISTGGG---APC------FYDNMEFM----NRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDD 151 (199)
T ss_dssp HHHHHHHTTCSSEEEECCTT---GGG------STTHHHHH----HHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHH
T ss_pred HHHHHHHhhcCCcEEECCCc---EEc------cHHHHHHH----HcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChh
Confidence 2233333445555543210 010 01111111 237899999999999999997 432221 122
Q ss_pred HHHHHHHHHHHh---hhCCCeEEEcCCC-CHHHHHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQM---LRDSSWKIIDACQ-SIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 203 ~~~~rv~~~y~~---l~~~~~~vIDa~~-s~eev~~~I~~~i~~~l 244 (259)
++.+.+.+.|.+ +.....++||++. ++++++++|.+.+..++
T Consensus 152 ~~~~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 152 ELMDFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 344444444443 1122457889875 99999999999998876
No 66
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.40 E-value=7.5e-13 Score=110.51 Aligned_cols=172 Identities=12% Similarity=0.102 Sum_probs=94.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLF 121 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~ 121 (259)
+.+|++|+|.|++||||||+++.|++.+.. .++.+ ..++.|..+..- .+.+......+. +..... +
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~-~~~~~~---~ 84 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQ-FLEFDK---Y 84 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTC-EEEEEE---E
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCC-CEEeHH---h
Confidence 678999999999999999999999998853 22222 223444311100 122222222111 000000 0
Q ss_pred HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCC-CCEEEEEe-CCHHHHHhhcCCCCCC
Q 024986 122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA-PDSVLYLD-IPPEKAAERGGYGGER 198 (259)
Q Consensus 122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~-PdlvI~Ld-~~~e~~~~R~~~R~d~ 198 (259)
..+.+.. ...+...+++|..||+|..+... ..+....+. ..++|||+ +|++++.+|+..|+..
T Consensus 85 ~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~--------------~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~ 150 (204)
T 2qor_A 85 ANNFYGTLKSEYDLAVGEGKICLFEMNINGV--------------KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTE 150 (204)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEEEEECCHHHH--------------HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS
T ss_pred CCCeecCCHHHHHHHHHcCCeEEEEECHHHH--------------HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC
Confidence 0000000 12345667789999998644211 111122221 23899998 9999999999877532
Q ss_pred cchHHHHHHHHHHHHhh-----hCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 199 YEHLEFQRKVAQCYQML-----RDSSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 199 ~e~~~~~~rv~~~y~~l-----~~~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
- ..+..+++.....++ ...+++++| + ++++++++|.+.|...+
T Consensus 151 ~-~~~i~~rl~~~~~~~~~~~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 151 K-PEEINKRMQELTREMDEADKVGFNYFIVN-D-DLARTYAELREYLLGSY 198 (204)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHTCSEEEEC-S-SHHHHHHHHHHHHHHHC
T ss_pred C-HHHHHHHHHHHHHHHHHhhhccCcEEEEC-c-CHHHHHHHHHHHHHHHh
Confidence 1 123334443332222 123455444 4 89999999999998765
No 67
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.39 E-value=2.3e-12 Score=103.86 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=77.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMMEA 134 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~~ 134 (259)
-..|+|+|++||||||+++.|+++|+ ++++..+.+. ....|..+++++... +.. .+. ..+ ...+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~-~~~~g~~~~~~~~~~---g~~----~~~--~~~-~~~l~~ 72 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMII-SERVGLSVREIFEEL---GED----NFR--MFE-KNLIDE 72 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHH-HHHHTSCHHHHHHHT---CHH----HHH--HHH-HHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHH-HHHhCCCHHHHHHHh---CHH----HHH--HHH-HHHHHH
Confidence 46899999999999999999999994 5555322110 000011111221110 000 000 000 011223
Q ss_pred HHhcCCe-EEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC--CCC--cc-hHHH---H
Q 024986 135 KLKAGTT-LIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG--GER--YE-HLEF---Q 205 (259)
Q Consensus 135 ~l~~g~~-VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R--~d~--~e-~~~~---~ 205 (259)
....+.. ||..+. .+.. . .. +..+|++|||++|++++.+|+..| .++ .+ ...+ .
T Consensus 73 ~~~~~~~~Vi~~g~---g~~~------~----~~----l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~ 135 (168)
T 1zuh_A 73 LKTLKTPHVISTGG---GIVM------H----EN----LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELF 135 (168)
T ss_dssp HHTCSSCCEEECCG---GGGG------C----GG----GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHH
T ss_pred HHhcCCCEEEECCC---CEec------h----hH----HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHH
Confidence 3334555 654211 1110 0 01 244789999999999999999765 222 11 1111 1
Q ss_pred HHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIV 240 (259)
Q Consensus 206 ~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i 240 (259)
......|.. ...++||++.++++++++|.+.+
T Consensus 136 ~~r~~~~~~---~a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 136 EKRQALYEK---NASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHH---TCSEEEEGGGCHHHHHHHHHHC-
T ss_pred HHHHHHHHH---HCCEEEECCCCHHHHHHHHHHHh
Confidence 111122322 23478998889999999998754
No 68
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.37 E-value=3.5e-12 Score=121.99 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=97.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
++.+|+|+|++||||||+++.|++.|...|..+..++ ++.+++.+.....+........+ .+. ...+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld--------~D~ir~~l~~~~~f~~~er~~~l--~~i--~~~~~ 438 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD--------GDVVRTHLSRGLGFSKEDRITNI--LRV--GFVAS 438 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC--------HHHHHHHTCTTCCSSHHHHHHHH--HHH--HHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC--------chHhhhhhcccccccHHHHHHHH--HHH--HHHHH
Confidence 4789999999999999999999999988887766554 45566655433233331111000 111 12344
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEeCCHHHHHhhcCCCC---CCcchHHHHHHHH
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLDIPPEKAAERGGYGG---ERYEHLEFQRKVA 209 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld~~~e~~~~R~~~R~---d~~e~~~~~~rv~ 209 (259)
..++.|..||+|... .|+.. .+... ..+..++ ++|||++|++++.+|+..+. ++.+..+.+..+.
T Consensus 439 ~~l~~G~~VI~d~~~----~~~~~----r~~~~---~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr 507 (546)
T 2gks_A 439 EIVKHNGVVICALVS----PYRSA----RNQVR---NMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVD 507 (546)
T ss_dssp HHHHTTCEEEEECCC----CCHHH----HHHHH---TTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTT
T ss_pred HHHhCCCEEEEEcCC----CCHHH----HHHHH---HHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhh
Confidence 566789999998422 12210 01121 1222367 89999999999999986320 0000000010111
Q ss_pred HHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 210 QCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 210 ~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
..|... ....++||++ .++++++++|.+.+.+
T Consensus 508 ~~~e~~-~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 508 DPYEPP-VAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp BCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hccccc-cCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 122211 1234889986 8999999999988764
No 69
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.37 E-value=1.2e-11 Score=99.72 Aligned_cols=154 Identities=15% Similarity=0.104 Sum_probs=83.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhH---HHHH-HH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANR---WEKR-SM 131 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r---~~~~-~~ 131 (259)
++|+|+|++||||||+++.|++.|+ +.++.. ...++.. . +..... ++.... +... ..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~---------d~~~~~~-~-g~~~~~-----~~~~~~~~~~~~~~~~ 63 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG---YEFVDT---------DIFMQHT-S-GMTVAD-----VVAAEGWPGFRRRESE 63 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEH---------HHHHHHH-H-CSCHHH-----HHHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CcEEcc---------cHHHHHH-h-CCCHHH-----HHHHcCHHHHHHHHHH
Confidence 5799999999999999999999984 444321 1222222 1 111100 010000 1111 11
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC--CC-CCC--cchHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG--YG-GER--YEHLEFQR 206 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~--~R-~d~--~e~~~~~~ 206 (259)
+...+..+.+||.++.- ... .......+. .+|++|||++|++++.+|+. .| .++ .+..+..+
T Consensus 64 ~~~~l~~~~~vi~~g~~--~~~-------~~~~~~~l~----~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~ 130 (173)
T 1e6c_A 64 ALQAVATPNRVVATGGG--MVL-------LEQNRQFMR----AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAE 130 (173)
T ss_dssp HHHHHCCSSEEEECCTT--GGG-------SHHHHHHHH----HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHH
T ss_pred HHHHhhcCCeEEECCCc--EEe-------CHHHHHHHH----cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHH
Confidence 22223445566654320 000 111111111 26899999999999999987 55 222 22223444
Q ss_pred HHHHHHHhhh---CCCeEEEcCC-CCHHHHHHHHHHHHH
Q 024986 207 KVAQCYQMLR---DSSWKIIDAC-QSIEDVEKQLKEIVL 241 (259)
Q Consensus 207 rv~~~y~~l~---~~~~~vIDa~-~s~eev~~~I~~~i~ 241 (259)
++...|.... ....++||++ .++++++++|.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 131 EMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhc
Confidence 5555444321 1134689988 899999999988653
No 70
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.36 E-value=7.3e-11 Score=96.25 Aligned_cols=160 Identities=17% Similarity=0.111 Sum_probs=82.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH--HH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR--SM 131 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~--~~ 131 (259)
.++.|+|.|++||||||+++.|++.++ +.++.. .+.+.+... ..+..... .+....+... ..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~---------d~~~~~~~g--~~~~~~~~--~~g~~~~~~~~~~~ 67 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDS---------DKEIEKRTG--ADIAWIFE--MEGEAGFRRREREM 67 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEH---------HHHHHHHHT--SCHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEC---------hHHHHHHcC--CChhhHHH--HhCHHHHHHHHHHH
Confidence 467899999999999999999999984 444421 122222211 11111000 0000111111 22
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhc--CCCCCC--cchHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERG--GYGGER--YEHLEFQRK 207 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~--~~R~d~--~e~~~~~~r 207 (259)
+.........||..+.- ... +......+.. ..++|||++|++++.+|+ ..+..+ ....+..+.
T Consensus 68 ~~~~~~~~~~vi~~gg~---~~~------~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~ 134 (185)
T 3trf_A 68 IEALCKLDNIILATGGG---VVL------DEKNRQQISE----TGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEK 134 (185)
T ss_dssp HHHHHHSSSCEEECCTT---GGG------SHHHHHHHHH----HEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHH
T ss_pred HHHHHhcCCcEEecCCc---eec------CHHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHH
Confidence 23333344556554311 111 1111111111 238999999999999999 543222 111122222
Q ss_pred HHH-------HHHhhhCCCeEEEcCCC-CHHHHHHHHHHHHHHHHh
Q 024986 208 VAQ-------CYQMLRDSSWKIIDACQ-SIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 208 v~~-------~y~~l~~~~~~vIDa~~-s~eev~~~I~~~i~~~l~ 245 (259)
+.. .|.+. ..++||++. ++++++++|.+.+...+.
T Consensus 135 l~~~~~~r~~~y~~~---ad~~Idt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 135 LQQLNEIRKPLYQAM---ADLVYPTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp HHHHHHHHHHHHHHH---CSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHhhc---CCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 222 23332 237889875 999999999998876664
No 71
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.35 E-value=2.2e-12 Score=123.97 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=96.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH---
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK--- 128 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~--- 128 (259)
.+|++|+|+|++||||||+++.|+++|...| +.+..++ ++.++..+..+..+... +|..+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD--------~D~ir~~l~~~~~f~~~--------er~~~i~r 457 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL--------GDTVRHELSSELGFTRE--------DRHTNIQR 457 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE--------HHHHHHHTCTTCCCSHH--------HHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC--------cHHHHHHhccccCCChh--------HHHHHHHH
Confidence 4678999999999999999999999998767 6666554 45566654333233321 12111
Q ss_pred H-HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcch-----H
Q 024986 129 R-SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEH-----L 202 (259)
Q Consensus 129 ~-~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~-----~ 202 (259)
. ..++....+|.+||+|- + +. |+.. .+++..+.... .++++|||++|++++.+|...+ .++. .
T Consensus 458 i~~v~~~~~~~g~~VI~~~-i-s~--~~~~----R~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~~r~--l~~~~~~~~i 526 (573)
T 1m8p_A 458 IAFVATELTRAGAAVIAAP-I-AP--YEES----RKFARDAVSQA-GSFFLVHVATPLEHCEQSDKRG--IYAAARRGEI 526 (573)
T ss_dssp HHHHHHHHHHTTCEEEEEC-C-CC--CHHH----HHHHHHHHHTT-SEEEEEEECCCHHHHHHHCSSC--HHHHHHTTSS
T ss_pred HHHHHHHHHhCCCEEEEEc-C-CC--cHHH----HHHHHHHHHhc-CCeEEEEEeCCHHHHHHHhccc--chhhhhHHHH
Confidence 1 23445567899999982 1 11 2111 12232222211 1569999999999999996532 0100 0
Q ss_pred HHHHHHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 203 EFQRKVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 203 ~~~~rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
+.+..+...|... ...-++||++ .++++++++|.+.+.+
T Consensus 527 ~~~~~~r~~~~~p-~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 527 KGFTGVDDPYETP-EKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp SSCBTTTBCCCCC-SSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccc-CCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 0000011112111 1234889987 5999999999998864
No 72
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.35 E-value=3.2e-11 Score=105.91 Aligned_cols=190 Identities=15% Similarity=0.166 Sum_probs=95.8
Q ss_pred CCCCcccccccCcc--cccC---CCCCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHH
Q 024986 32 KCSCTPFRMESSSS--LRIG---NIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVG 99 (259)
Q Consensus 32 ~~~~~~~~~~~~~~--~~~~---~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g 99 (259)
|.|....|+.-..+ .... ....++++|+|+|++||||||+++.|+ .+ |+.++... +|+ .....
T Consensus 47 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTva~~La-~l---g~~~id~D~~~~~~~~~~-~~~~~ 121 (281)
T 2f6r_A 47 KVSSSSFRQRILGNLLQPPNERPELPSGLYVLGLTGISGSGKSSVAQRLK-NL---GAYIIDSDHLGHRAYAPG-GPAYQ 121 (281)
T ss_dssp --------CEETTSCCSCCCCCTTSCTTCEEEEEEECTTSCHHHHHHHHH-HH---TCEEEEHHHHHHHHTSTT-STTHH
T ss_pred eecchHHHHHHHHHHhCCccccccCCCCCEEEEEECCCCCCHHHHHHHHH-HC---CCcEEehhHHHHHHhcCC-hHHHH
Confidence 45555566655422 1110 122456899999999999999999999 44 66665431 222 11211
Q ss_pred HHHHHHHh----C-CCCCCHHHH-HHHHHH-hHHH------------HH-HHHHHHHhc-CCeEEEcccccchhhhhcCC
Q 024986 100 QMISAYLS----N-QSHLDDHTI-HLLFSA-NRWE------------KR-SMMEAKLKA-GTTLIVDRYSYSGVAFSSAK 158 (259)
Q Consensus 100 ~~ir~~l~----~-~~~~~~~~~-~ll~~a-~r~~------------~~-~~i~~~l~~-g~~VI~DR~~~s~~ay~~~~ 158 (259)
+ +.+.+. . .+.++.... ..+|.. .+.. .. ..+...... ..+||+|+.+. +..
T Consensus 122 ~-i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l----~~~-- 194 (281)
T 2f6r_A 122 P-VVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML----LEA-- 194 (281)
T ss_dssp H-HHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTT----TTT--
T ss_pred H-HHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechh----hcc--
Confidence 2 222111 1 122333221 111110 0100 00 122222233 36889887531 110
Q ss_pred CCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHH--Hh-hhCCCeEEEcCCCCHHHHHHH
Q 024986 159 GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCY--QM-LRDSSWKIIDACQSIEDVEKQ 235 (259)
Q Consensus 159 gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y--~~-l~~~~~~vIDa~~s~eev~~~ 235 (259)
.| ...+|++|||++|++++.+|+..|+. ....+..+++...+ .. ..... ++||++.+++++.++
T Consensus 195 ----~~-------~~~~d~vI~l~a~~ev~~~Rl~~R~g-~s~e~~~~ri~~q~~~~~~~~~AD-~vIdn~~s~eel~~~ 261 (281)
T 2f6r_A 195 ----GW-------QSMVHEVWTVVIPETEAVRRIVERDG-LSEAAAQSRLQSQMSGQQLVEQSN-VVLSTLWESHVTQSQ 261 (281)
T ss_dssp ----TG-------GGGCSEEEEEECCHHHHHHHHHHHHC-CCHHHHHHHHHTSCCHHHHHHTCS-EEEECSSCHHHHHHH
T ss_pred ----ch-------HHhCCEEEEEcCCHHHHHHHHHHcCC-CCHHHHHHHHHHcCChHhhHhhCC-EEEECCCCHHHHHHH
Confidence 11 12378999999999999999876522 11223334433221 01 11123 678998999999999
Q ss_pred HHHHHHHHHhh
Q 024986 236 LKEIVLDQVTA 246 (259)
Q Consensus 236 I~~~i~~~l~~ 246 (259)
|.+.+..++..
T Consensus 262 I~~~l~~l~~~ 272 (281)
T 2f6r_A 262 VEKAWNLLQKR 272 (281)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 73
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.33 E-value=5.2e-11 Score=100.17 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=45.1
Q ss_pred CCCCCEEEEEeCCHHHHHhhcC----CCCC--Ccch--HHHHHHHHHHHHh----hhC-CCeEEEcCC-CCHHHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGG----YGGE--RYEH--LEFQRKVAQCYQM----LRD-SSWKIIDAC-QSIEDVEKQLK 237 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~----~R~d--~~e~--~~~~~rv~~~y~~----l~~-~~~~vIDa~-~s~eev~~~I~ 237 (259)
++.+|++|||++|+++..+|.. .|+. ..+. ..+.+++...|.. +.. ...++||++ .++++++++|.
T Consensus 138 ~~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~ 217 (227)
T 1cke_A 138 FPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKAL 217 (227)
T ss_dssp CTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHH
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999942 2221 2221 1233333223321 222 245899998 89999999999
Q ss_pred HHHHHHH
Q 024986 238 EIVLDQV 244 (259)
Q Consensus 238 ~~i~~~l 244 (259)
+.+...+
T Consensus 218 ~~l~~~~ 224 (227)
T 1cke_A 218 QYARQKL 224 (227)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9887664
No 74
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.32 E-value=2.4e-11 Score=104.22 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=92.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE--EEEe-cCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV--ELWR-FPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR 129 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v--~~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~ 129 (259)
.++.+|+|.|++||||||+++.|+++++...... +... .+. +...+..++.++.++.........
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~v~----------- 92 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA-STEVGEMAKQYIEKSLLVPDHVIT----------- 92 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH-----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc-CChHHHHHHHHHHcCCCCCHHHHH-----------
Confidence 4578999999999999999999999984321110 0000 111 223444444444433222221110
Q ss_pred HHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC-----------
Q 024986 130 SMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG----------- 196 (259)
Q Consensus 130 ~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~----------- 196 (259)
+.+...+. .+..+++|+++.+. .....+. ....++++|||++|++++.+|+..|.
T Consensus 93 ~~l~~~l~~~~~~~~il~g~~~~~-----------~~~~~l~-~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al 160 (246)
T 2bbw_A 93 RLMMSELENRRGQHWLLDGFPRTL-----------GQAEALD-KICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNL 160 (246)
T ss_dssp HHHHHHHHTCTTSCEEEESCCCSH-----------HHHHHHH-TTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEET
T ss_pred HHHHHHHHhcCCCeEEEECCCCCH-----------HHHHHHH-hhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCcccc
Confidence 11112222 24456678765421 1111111 23568999999999999988864320
Q ss_pred ---------------CCc-----c-hHHHHHHHHHHHHhh--------h-CCCeEEEcCCCCHHHHHHHHHHHHHHHHh
Q 024986 197 ---------------ERY-----E-HLEFQRKVAQCYQML--------R-DSSWKIIDACQSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 197 ---------------d~~-----e-~~~~~~rv~~~y~~l--------~-~~~~~vIDa~~s~eev~~~I~~~i~~~l~ 245 (259)
+.. + ...+.+++.. |.+. . ...+++||++++ ++|+++|.+.+.+.+.
T Consensus 161 ~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~-~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~ 237 (246)
T 2bbw_A 161 DFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ-YKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT 237 (246)
T ss_dssp TTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH-HHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred ccCCCcccccccccccccccCCCCcHHHHHHHHHH-HHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence 111 1 1233333332 2211 1 135899999988 9999999999887554
No 75
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.30 E-value=3.2e-11 Score=98.44 Aligned_cols=156 Identities=18% Similarity=0.122 Sum_probs=81.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHH---HHHHHHhHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI---HLLFSANRWEKRSM 131 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~---~ll~~a~r~~~~~~ 131 (259)
+++|+|.|++||||||+++.|++.++ +.++.. ...+++.. . ........ ...|.. .. ...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~---------D~~~~~~~-g-~~~~~~~~~~g~~~~~~--~~-~~~ 64 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALG---VGLLDT---------DVAIEQRT-G-RSIADIFATDGEQEFRR--IE-EDV 64 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHT---CCEEEH---------HHHHHHHH-S-SCHHHHHHHHCHHHHHH--HH-HHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEeC---------chHHHHHc-C-CCHHHHHHHhChHHHHH--HH-HHH
Confidence 45799999999999999999999984 444321 12222222 1 11100000 000100 00 012
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVA 209 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~ 209 (259)
+...+.....||.++.. ... +......+ . .+.+|||++|++++.+|+..|..+ +...+..+.+.
T Consensus 65 ~~~~~~~~~~vi~~g~~---~v~------~~~~~~~l----~-~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~ 130 (184)
T 2iyv_A 65 VRAALADHDGVLSLGGG---AVT------SPGVRAAL----A-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYR 130 (184)
T ss_dssp HHHHHHHCCSEEECCTT---GGG------SHHHHHHH----T-TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHH
T ss_pred HHHHHhcCCeEEecCCc---EEc------CHHHHHHH----c-CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHH
Confidence 23333344556654321 111 11111111 1 568999999999999999876432 11111122222
Q ss_pred HHHHh---h-hCCCeEEEcCC-CCHHHHHHHHHHHHH
Q 024986 210 QCYQM---L-RDSSWKIIDAC-QSIEDVEKQLKEIVL 241 (259)
Q Consensus 210 ~~y~~---l-~~~~~~vIDa~-~s~eev~~~I~~~i~ 241 (259)
..|.. . .....++||++ .++++++++|.+.+.
T Consensus 131 ~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 131 ALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp HHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHh
Confidence 22221 1 11234789998 899999999987653
No 76
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.29 E-value=2.9e-11 Score=100.51 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=89.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
..+|.+|+|.|++||||||+++.|+..+...|.-++.+. ++.++..+.....+.+......+ .+. ...
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d--------~d~~~~~~~~~~~~~~~~~~~~~--~~~--~~~ 89 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD--------GDNVRHGLNRDLSFKAEDRAENI--RRV--GEV 89 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHTTTTTTTCCSSHHHHHHHH--HHH--HHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec--------CchhhhHhhcccCcChHHHHHHH--HHH--HHH
Confidence 467999999999999999999999999986676433333 23333222222223332111100 010 011
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCC------CCCcchHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYG------GERYEHLEFQ 205 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R------~d~~e~~~~~ 205 (259)
.......|..||.+..... ..+ .+.+.... ...+.+.|||++|++++.+|...+ ...+...
T Consensus 90 ~~~~~~~~~~vi~~~~~~~-~~~-------r~~~~~~~--~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~--- 156 (200)
T 3uie_A 90 AKLFADAGIICIASLISPY-RTD-------RDACRSLL--PEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGF--- 156 (200)
T ss_dssp HHHHHHTTCEEEEECCCCC-HHH-------HHHHHHTS--CTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSC---
T ss_pred HHHHHhCCceEEEecCCch-HHH-------HHHHHHhc--CCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCC---
Confidence 2223356777776432110 000 12222211 122446899999999999997431 1111000
Q ss_pred HHHHHHHHhhhCCCeEEEcCC--CCHHHHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLRDSSWKIIDAC--QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 206 ~rv~~~y~~l~~~~~~vIDa~--~s~eev~~~I~~~i~~ 242 (259)
..+...|.... ...++||++ .++++++++|.+.+..
T Consensus 157 ~~~~~~~~~~~-~~~~~idt~~~~~~~e~v~~i~~~l~~ 194 (200)
T 3uie_A 157 TGIDDPYEPPL-NCEISLGREGGTSPIEMAEKVVGYLDN 194 (200)
T ss_dssp BTTTBCCCCCS-SCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCCC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 00112232211 245789986 5999999999998865
No 77
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.28 E-value=3e-11 Score=99.70 Aligned_cols=175 Identities=17% Similarity=0.233 Sum_probs=91.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCC----CCChHHHHHHHHHhC---CCCCCHHHHH-HHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD----RTTSVGQMISAYLSN---QSHLDDHTIH-LLFSA 123 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~----~~~~~g~~ir~~l~~---~~~~~~~~~~-ll~~a 123 (259)
..++++|+|.|++||||||+++.|++. |+.++....-. .+.+ ..+.+.+.+ .+.++..... ..|..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d~~~~~~~~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~ 78 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVLDLDALAARARENKE--EELKRLFPEAVVGGRLDRRALARLVFSD 78 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHHHHHHHHHHHTH--HHHHHHCGGGEETTEECHHHHHHHHTTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEEcccHHHHHhcCChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCC
Confidence 356789999999999999999999985 56555321100 0000 112221110 1123221111 11100
Q ss_pred -hHHHHH----------HHHHHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhh
Q 024986 124 -NRWEKR----------SMMEAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER 191 (259)
Q Consensus 124 -~r~~~~----------~~i~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R 191 (259)
.....+ ..+...... +..||+|... .+.. .| ...+|++|||++|++++.+|
T Consensus 79 ~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~----l~~~------~~-------~~~~d~~i~l~~~~e~~~~R 141 (203)
T 1uf9_A 79 PERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPL----LFEK------GW-------EGRLHGTLLVAAPLEERVRR 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTT----TTTT------TC-------GGGSSEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecc----eecc------Cc-------hhhCCEEEEEECCHHHHHHH
Confidence 000000 111111123 5788888531 1110 01 13478999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHH---HHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Q 024986 192 GGYGGERYEHLEFQRKVAQC---YQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQVTACKKGK 251 (259)
Q Consensus 192 ~~~R~d~~e~~~~~~rv~~~---y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~~~~ 251 (259)
+..|+. +...++..++.+. |......+ ++||++.+++++.++|.+.+..++...++|+
T Consensus 142 ~~~R~~-~~~~~~~~~i~~~~~~~~~~~~ad-~vId~~~~~~~~~~~i~~~~~~~~~~~~~~~ 202 (203)
T 1uf9_A 142 VMARSG-LSREEVLARERAQMPEEEKRKRAT-WVLENTGSLEDLERALKAVLAELTGGATEGR 202 (203)
T ss_dssp HHTTTC-CTTHHHHHHHTTSCCHHHHHHHCS-EEECCSSHHHHHHHHHHHHHHSCCC------
T ss_pred HHHcCC-CCHHHHHHHHHHCCChhHHHHhCC-EEEECCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 877632 2223444444332 11111123 5899988999999999999887766655553
No 78
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.27 E-value=1.6e-10 Score=93.51 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=84.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhC-----CC--CC--------CHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSN-----QS--HL--------DDHTIH 118 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~-----~~--~~--------~~~~~~ 118 (259)
+|++|+|.|++||||||+++.|++.++. ..+.+.. +.+++.... .. .+ ......
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGV--------DSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRA 70 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEH--------HHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEecc--------chHhhhcchhhccchhhccccCCCccccchhHHH
Confidence 4689999999999999999999999853 2232210 111111000 00 00 111110
Q ss_pred HHHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC
Q 024986 119 LLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE 197 (259)
Q Consensus 119 ll~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d 197 (259)
+ +.. ...+...++.|..||+|..+...-... ..+...+ ...+..+|||++|++++.+|+..|++
T Consensus 71 -~-----~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~------~~~~~~~---~~~~~~~v~l~~~~e~l~~R~~~r~~ 135 (178)
T 1qhx_A 71 -L-----EGAWAEGVVAMARAGARIIIDDVFLGGAAAQ------ERWRSFV---GDLDVLWVGVRCDGAVAEGRETARGD 135 (178)
T ss_dssp -H-----HHHHHHHHHHHHHTTCEEEEEECCTTTHHHH------HHHHHHH---TTCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred -H-----HHHHHHHHHHHHhcCCeEEEEeccccChHHH------HHHHHHh---cCCcEEEEEEECCHHHHHHHHHhhCC
Confidence 0 111 122344556788888886432111100 0122211 12355789999999999999977654
Q ss_pred CcchHHHHHHHHHHHHhhhC--CCeEEEcCC-CCHHHHHHHHHHHH
Q 024986 198 RYEHLEFQRKVAQCYQMLRD--SSWKIIDAC-QSIEDVEKQLKEIV 240 (259)
Q Consensus 198 ~~e~~~~~~rv~~~y~~l~~--~~~~vIDa~-~s~eev~~~I~~~i 240 (259)
+.... . ...+..+.. ...++||++ .++++++++|.+.+
T Consensus 136 ~~~~~--~---~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 136 RVAGM--A---AKQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp SCTTH--H---HHHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred cccch--h---hhhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 42221 1 112222221 234789986 59999999998654
No 79
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=99.27 E-value=8.5e-12 Score=109.22 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=81.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSMME 133 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~i~ 133 (259)
.+.+|+|+|.|||||+++++.|.+.++.+|+.|+.+..|.. .+. .. .+ ..|+. .
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~----eE~-----~~--~y----------lwR~~-----~ 127 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTD----EEK-----SH--DF----------LWRIE-----K 127 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCH----HHH-----TS--CT----------THHHH-----T
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCCh----hhh-----cC--CH----------HHHHH-----H
Confidence 68999999999999999999999999999999987777751 111 11 11 01221 1
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCC-C-HHH------HHhhhc---cCCCCCEEEEEeCCHHHHHhhcCCC
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGI-D-IEW------CKAPEI---GLLAPDSVLYLDIPPEKAAERGGYG 195 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl-~-~~~------~~~~~~---~~~~PdlvI~Ld~~~e~~~~R~~~R 195 (259)
..=..|.++|+||++|+...+....|. + .+| +..++. ..+...+.|||+++.++..+|+..|
T Consensus 128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R 200 (289)
T 3rhf_A 128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIAR 200 (289)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHH
Confidence 111579999999999988776654443 2 122 222232 3456678899999999999998765
No 80
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.27 E-value=6e-12 Score=104.93 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=47.6
Q ss_pred CCCCEEEEEeCCHHHHHhhcCCCCCCcch-H-HHHHHHHHHHHhh----hC--CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 173 LAPDSVLYLDIPPEKAAERGGYGGERYEH-L-EFQRKVAQCYQML----RD--SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~-~-~~~~rv~~~y~~l----~~--~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
..||.+|||++|++++.+|+..|+...+. . .+..++...|... .. ..+++||++++++++.++|.+.+.+
T Consensus 128 ~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 128 TIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999998555311111 1 1222344444332 11 4678899999999999999988754
No 81
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.25 E-value=7.5e-11 Score=95.64 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=43.3
Q ss_pred CCEEEEEeCCHHHHHhhcCCC--CCCcchHHHHHHHHHHHHhh---h-CCCeEEEcCC-CCHHHHHHHHHHHHH
Q 024986 175 PDSVLYLDIPPEKAAERGGYG--GERYEHLEFQRKVAQCYQML---R-DSSWKIIDAC-QSIEDVEKQLKEIVL 241 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R--~d~~e~~~~~~rv~~~y~~l---~-~~~~~vIDa~-~s~eev~~~I~~~i~ 241 (259)
.+++|||++|++++.+|+..| .++..... .+.+.+.|.+. . ....++||++ .++++++++|.+.+.
T Consensus 93 ~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~-~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 93 AGFCIYLKADFEYLKKRLDKDEISKRPLFYD-EIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp GCEEEEEECCHHHHTTCCCGGGTTTSCTTCC-HHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHHHhcccCCCCCCccc-HHHHHHHHHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHHHH
Confidence 468999999999999998765 23311100 12233333221 1 1245899998 899999999998874
No 82
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.24 E-value=1.1e-10 Score=94.15 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=36.5
Q ss_pred CCEEEEEeCCHHHHHhhcCCCCCC-c----ch-HHHHHH----HHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHH
Q 024986 175 PDSVLYLDIPPEKAAERGGYGGER-Y----EH-LEFQRK----VAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVL 241 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R~d~-~----e~-~~~~~r----v~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~ 241 (259)
.++++||++|++++.+|+..|..+ . +. .+.... ....|...+ .++||++ .++++++++|.+.+.
T Consensus 97 ~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a---~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 97 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIA---DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHC---SEEC-----CHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhC---CEEEECCCCCHHHHHHHHHHHHH
Confidence 468999999999999999865321 0 11 122221 112343332 4789987 899999999998764
No 83
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.23 E-value=1.3e-10 Score=102.18 Aligned_cols=153 Identities=8% Similarity=0.034 Sum_probs=88.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC--C---CCCHHHHHHHHHHhHHHH-
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ--S---HLDDHTIHLLFSANRWEK- 128 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~--~---~~~~~~~~ll~~a~r~~~- 128 (259)
+++|+|.|++||||||+++.|++++. |+.++ . .+.++..+... + .+........ ...
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i--~--------~D~~r~~~~~~~~g~~~~~~~~~~~~~-----~~~~ 64 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNI--N--------RDDYRQSIMAHEERDEYKYTKKKEGIV-----TGMQ 64 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST--TEEEE--C--------HHHHHHHHTTSCCCC---CCHHHHHHH-----HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC--CcEEe--c--------ccHHHHHhccCCcccccccchhhhhHH-----HHHH
Confidence 46899999999999999999998642 33222 1 12344433321 1 1222211111 011
Q ss_pred HHHHHHHH---hcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHH
Q 024986 129 RSMMEAKL---KAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQ 205 (259)
Q Consensus 129 ~~~i~~~l---~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~ 205 (259)
...+...+ ..|..||+|++..+.. +. +.+..+......|+.+|||++|++++.+|+..|.....+.+..
T Consensus 65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~-~~-------~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i 136 (301)
T 1ltq_A 65 FDTAKSILYGGDSVKGVIISDTNLNPE-RR-------LAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVL 136 (301)
T ss_dssp HHHHHHHTTSCTTCCEEEECSCCCCHH-HH-------HHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHH
T ss_pred HHHHHHHHhhccCCCEEEEeCCCCCHH-HH-------HHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHH
Confidence 13455667 7788999998765421 11 1222222233456799999999999999998775332233444
Q ss_pred HHHHHHHHhhhC----------CCeEEEcCCCCHHHH
Q 024986 206 RKVAQCYQMLRD----------SSWKIIDACQSIEDV 232 (259)
Q Consensus 206 ~rv~~~y~~l~~----------~~~~vIDa~~s~eev 232 (259)
++..+.|..... ...+++|.+++++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~ 173 (301)
T 1ltq_A 137 RSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKM 173 (301)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBCC
T ss_pred HHHHHHHhcccCCcceeccccccceEEEeCCCCcccc
Confidence 444455554321 135667877665554
No 84
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.23 E-value=2.2e-11 Score=99.12 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=80.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHH--HhCC-CCCCHHHHHHHHHHhHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAY--LSNQ-SHLDDHTIHLLFSANRWEKR 129 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~--l~~~-~~~~~~~~~ll~~a~r~~~~ 129 (259)
.++++|+|+|++||||||+++.|++.++ +.++.. ++.+++. +... ...... ++...+ ..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~---------d~~~~~~~~~~~~~~~~~~~----~~~~~~--~~ 70 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG---LKYINV---------GDLAREEQLYDGYDEEYDCP----ILDEDR--VV 70 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEH---------HHHHHHHTCEEEEETTTTEE----EECHHH--HH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEH---------HHHHhhcchhhhhhhhhcCc----cCChHH--HH
Confidence 4678899999999999999999999984 333321 2333222 1000 000000 000000 01
Q ss_pred HHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc---hHHHHH
Q 024986 130 SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE---HLEFQR 206 (259)
Q Consensus 130 ~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e---~~~~~~ 206 (259)
..+...+..|..|| |..... .+.. ..+|.+|||++|++++.+|+..|+...+ .....+
T Consensus 71 ~~~~~~~~~g~~vv-~~~~~~--------~~~~----------~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~ 131 (180)
T 3iij_A 71 DELDNQMREGGVIV-DYHGCD--------FFPE----------RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 131 (180)
T ss_dssp HHHHHHHHHCCEEE-ECSCCT--------TSCG----------GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEE-Eechhh--------hcch----------hcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12334455576655 422110 0000 1278999999999999999987642211 111112
Q ss_pred HHHHHHHhh---hCCCeEEEc-CCCCHHHH---HHHHHHHHHHHH
Q 024986 207 KVAQCYQML---RDSSWKIID-ACQSIEDV---EKQLKEIVLDQV 244 (259)
Q Consensus 207 rv~~~y~~l---~~~~~~vID-a~~s~eev---~~~I~~~i~~~l 244 (259)
.+...|.+. .... .+|| ++.+++++ +++|.+.+.+..
T Consensus 132 ~~~~~~~~~~~~y~~~-~~i~~~~~~~~ev~~~v~~i~~~l~~~~ 175 (180)
T 3iij_A 132 IFQVLYEEATASYKEE-IVHQLPSNKPEELENNVDQILKWIEQWI 175 (180)
T ss_dssp HTTHHHHHHHHHSCGG-GEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-eEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233334332 1122 3444 46899999 555655555543
No 85
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.19 E-value=4.5e-11 Score=99.16 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=47.0
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHHHHh--hhCCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQM--LRDSSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~y~~--l~~~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
.+|.+|||++|++++.+|+..|+ +...++.+++...+.. .....-++||++.+++++.++|.+.+....
T Consensus 123 ~~~~~i~l~~~~e~~~~Rl~~R~--~~~~~~~~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 123 NYDKLIVVYAPYEVCKERAIKRG--MSEEDFERRWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp GSSEEEEECCCHHHHHHHHHHTC--CCHHHHHHHHTTSCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTC
T ss_pred hCCEEEEEECCHHHHHHHHHHcC--CCHHHHHHHHHhCCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999997763 2223444444332211 111122689999999999999999886543
No 86
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.18 E-value=4e-09 Score=87.48 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=44.1
Q ss_pred CCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH------HHHhhhCCCeEEEcCCCCHH----HHHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ------CYQMLRDSSWKIIDACQSIE----DVEKQLKEIVLDQ 243 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~------~y~~l~~~~~~vIDa~~s~e----ev~~~I~~~i~~~ 243 (259)
..|.+|||++|+++..+|+..|+.. ...+..+++.. .|. .+ + ++||++.+++ ++.++|.+.+...
T Consensus 123 ~~d~vi~l~~~~e~~~~Rl~~R~~~-~~e~~~~r~~~q~~~~~~~~-~a--d-~vIdn~~~~~~~~~~~~~~i~~~~~~~ 197 (206)
T 1jjv_A 123 LCDRILVVDVSPQTQLARSAQRDNN-NFEQIQRIMNSQVSQQERLK-WA--D-DVINNDAELAQNLPHLQQKVLELHQFY 197 (206)
T ss_dssp GCSEEEEEECCHHHHHHHHC------CHHHHHHHHHHSCCHHHHHH-HC--S-EEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEECCHHHHHHHHHHcCCC-CHHHHHHHHHhcCChHHHHH-hC--C-EEEECCCCccccHHHHHHHHHHHHHHH
Confidence 3589999999999999999877422 11233333321 121 22 3 7899988999 9999999888765
Q ss_pred Hh
Q 024986 244 VT 245 (259)
Q Consensus 244 l~ 245 (259)
+.
T Consensus 198 ~~ 199 (206)
T 1jjv_A 198 LQ 199 (206)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 87
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.14 E-value=2.5e-10 Score=94.33 Aligned_cols=168 Identities=14% Similarity=0.196 Sum_probs=87.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE-EEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHh------
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV-ELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSAN------ 124 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v-~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~------ 124 (259)
+.+|.+|+|.||+||||||+++.|...+....+.. ...+.+..+...+ + .++ ..++....-+....
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEG--V-DYF----FIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBT--T-TBE----ECCHHHHHHHHHHTCEEEEE
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcC--c-eEE----eccHHHHHHHHhcCcEEeee
Confidence 45789999999999999999999998763100000 0111111000000 0 000 00111000000000
Q ss_pred -----HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCC
Q 024986 125 -----RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGER 198 (259)
Q Consensus 125 -----r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~ 198 (259)
.+.. ...+...+..|..+|+|..+.. +..+....+.++.++++..|++++.+|+..|+..
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~--------------~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~ 142 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQG--------------ARQIRELFPPALSIFILPPSIEALRERLIKRRQD 142 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHH--------------HHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTS
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHH--------------HHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCC
Confidence 0000 1234566778888988853321 1122233445655555566799999999877532
Q ss_pred cchHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 199 YEHLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 199 ~e~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
.+ .+..+++..++.+.. ..+++++| + +++++.++|.+.+...
T Consensus 143 ~~-~~i~~rl~~~~~~~~~~~~~d~vi~n-~-~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 143 DT-AIIEQRLALAREEMAHYKEFDYLVVN-D-NFDQAVQNLIHIISAE 187 (205)
T ss_dssp CS-STHHHHHHHHHHHHTTGGGCSEEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHhcccCCCEEEEC-C-CHHHHHHHHHHHHHHH
Confidence 22 134445555444332 24555554 4 8999999999988753
No 88
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=1.2e-10 Score=97.53 Aligned_cols=171 Identities=14% Similarity=0.213 Sum_probs=87.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLL 120 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll 120 (259)
++.+|.+|+|.||+||||||+++.|.+.+.. .+..+. ..+.|..+... .+.+.+.+..+. +-.+. .
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~-~le~~---~ 79 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGK-MLEYA---E 79 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEE---E
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCc-EEEEE---E
Confidence 3468999999999999999999999998753 222221 22333211000 111222211110 00000 0
Q ss_pred HHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeC-CHHHHHhhcCCCCCC
Q 024986 121 FSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDI-PPEKAAERGGYGGER 198 (259)
Q Consensus 121 ~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~-~~e~~~~R~~~R~d~ 198 (259)
+..+.+.. ...+...+++|..||+|-.+.. ...+....+.+ .+||+.. +++++.+|+..|+..
T Consensus 80 ~~~~~yg~~~~~i~~~l~~g~~vild~~~~g--------------~~~~~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~~ 144 (208)
T 3tau_A 80 YVGNYYGTPLEYVEEKLAAGVDIFLEIEVQG--------------AMQVRKAMPEG-IFIFLTPPDLSELKNRIIGRGTE 144 (208)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCCEEEECCHHH--------------HHHHHHHCTTS-EEEEEECTTTTTSSCC-------
T ss_pred EccccCCCcHHHHHHHHHcCCeEEEEeeHHH--------------HHHHHHhCCCe-EEEEEeCCCHHHHHHHHHhcCCC
Confidence 00000000 1234566778988998853321 11222334444 4455554 488999999877532
Q ss_pred cchHHHHHHHHHHHHhh---hCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 199 YEHLEFQRKVAQCYQML---RDSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 199 ~e~~~~~~rv~~~y~~l---~~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
...+..+++..+..++ ...+++++|. ++++++++|.++|...
T Consensus 145 -~~e~i~~Rl~~~~~e~~~~~~~d~vivN~--~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 145 -SMEVVEERMETAKKEIEMMASYDYAVVND--VVANAVQKIKGIVETE 189 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhhccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence 1235566665555433 2256777764 5999999999988753
No 89
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.14 E-value=1.9e-09 Score=93.26 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=85.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH--HHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR--SMM 132 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~--~~i 132 (259)
|..|+|.|++||||||+++.|++.++ +.++.. +..++... .+..+..... .+....+... ..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~---------d~~~~~~~-~g~~i~~i~~--~~ge~~fr~~e~~~l 112 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDC---------DTLIEQAM-KGTSVAEIFE--HFGESVFREKETEAL 112 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEH---------HHHHHHHS-TTSCHHHHHH--HHCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeC---------cHHHHHHh-cCccHHHHHH--HhCcHHHHHHHHHHH
Confidence 88999999999999999999999984 433321 22233322 1111111000 0000001011 123
Q ss_pred HHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC--CC-c-ch------
Q 024986 133 EAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG--ER-Y-EH------ 201 (259)
Q Consensus 133 ~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~--d~-~-e~------ 201 (259)
...... ...||.++. +... ..+-...+ ..+++|||++|++++.+|+..+. .+ . ..
T Consensus 113 ~~l~~~~~~~Via~Gg---G~v~------~~~~~~~l-----~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~ 178 (250)
T 3nwj_A 113 KKLSLMYHQVVVSTGG---GAVI------RPINWKYM-----HKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDT 178 (250)
T ss_dssp HHHHHHCSSEEEECCG---GGGG------SHHHHHHH-----TTSEEEEEECCHHHHHHHHHC----------------C
T ss_pred HHHHhhcCCcEEecCC---Ceec------CHHHHHHH-----hCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccc
Confidence 333333 457776642 1111 01111111 13799999999999999986421 11 0 00
Q ss_pred -HHHHHHHHHHHHh---hh-CCCeEE-----------EcCC-CCHHHHHHHHHHHHHHHHhhh
Q 024986 202 -LEFQRKVAQCYQM---LR-DSSWKI-----------IDAC-QSIEDVEKQLKEIVLDQVTAC 247 (259)
Q Consensus 202 -~~~~~rv~~~y~~---l~-~~~~~v-----------IDa~-~s~eev~~~I~~~i~~~l~~~ 247 (259)
.+..+++...|.+ +. ....++ ||++ .++++++++|.+.+...+..+
T Consensus 179 ~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~ 241 (250)
T 3nwj_A 179 YTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 241 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 0112333333332 11 133433 3764 799999999999999887654
No 90
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.14 E-value=8.8e-10 Score=95.07 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=44.1
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCC-----CC-CCcchHHHHHHHHHH----H-HhhhC----CCeEEEcCC-CCHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGY-----GG-ERYEHLEFQRKVAQC----Y-QMLRD----SSWKIIDAC-QSIEDVEKQ 235 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~-----R~-d~~e~~~~~~rv~~~----y-~~l~~----~~~~vIDa~-~s~eev~~~ 235 (259)
++..+++|||++|+++..+|... +. ..++ +..+.+.+. . ..+.. .+.++||++ .++++++++
T Consensus 160 ~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~--~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~ 237 (252)
T 4e22_A 160 FPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFE--RLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQ 237 (252)
T ss_dssp STTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHH--HHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHH
T ss_pred cCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHH
Confidence 35568999999999999888643 21 1222 222222111 1 11111 235889986 499999999
Q ss_pred HHHHHHHHHh
Q 024986 236 LKEIVLDQVT 245 (259)
Q Consensus 236 I~~~i~~~l~ 245 (259)
|.+.+...+.
T Consensus 238 I~~~i~~~~~ 247 (252)
T 4e22_A 238 ALAYAQRILA 247 (252)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 91
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.12 E-value=5e-09 Score=89.67 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCCCCEEEEEeCCHHHHHhhcCC----CCCCcchHHHHHHHHHHH----H-hhhC----CCeEEEcCC-CCHHHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGGY----GGERYEHLEFQRKVAQCY----Q-MLRD----SSWKIIDAC-QSIEDVEKQLK 237 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~~----R~d~~e~~~~~~rv~~~y----~-~l~~----~~~~vIDa~-~s~eev~~~I~ 237 (259)
++..++.|||++|+++..+|... ++......+....+.+.- . .+.. .+-++||++ .+++++++.|.
T Consensus 143 ~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~ 222 (233)
T 3r20_A 143 LPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLL 222 (233)
T ss_dssp CTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHH
T ss_pred cCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHH
Confidence 34457999999999999988753 112111112222222111 1 1211 233899985 79999999999
Q ss_pred HHHHHHH
Q 024986 238 EIVLDQV 244 (259)
Q Consensus 238 ~~i~~~l 244 (259)
+.+...+
T Consensus 223 ~~i~~~~ 229 (233)
T 3r20_A 223 DLVTAQA 229 (233)
T ss_dssp HHC----
T ss_pred HHHHHhh
Confidence 9886654
No 92
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.11 E-value=7.1e-10 Score=90.89 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+++.|+|.|++||||||+++.|++.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999999999998
No 93
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.11 E-value=8.2e-09 Score=87.76 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=44.3
Q ss_pred CCCEEEEEeCCHHHHHhhc----CCCCCCcchHHHHHHHHH-HHHh-------hhC-CCeEEEcCC-CCHHHHHHHHHHH
Q 024986 174 APDSVLYLDIPPEKAAERG----GYGGERYEHLEFQRKVAQ-CYQM-------LRD-SSWKIIDAC-QSIEDVEKQLKEI 239 (259)
Q Consensus 174 ~PdlvI~Ld~~~e~~~~R~----~~R~d~~e~~~~~~rv~~-~y~~-------l~~-~~~~vIDa~-~s~eev~~~I~~~ 239 (259)
..|++|||++|+++..+|+ ..|+......+..+.+.+ .+.. +.. ...++||++ .++++++++|.+.
T Consensus 152 ~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~ 231 (236)
T 1q3t_A 152 QAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAE 231 (236)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999996 334321111122223322 2211 111 245899998 5999999999998
Q ss_pred HHHH
Q 024986 240 VLDQ 243 (259)
Q Consensus 240 i~~~ 243 (259)
+...
T Consensus 232 l~~~ 235 (236)
T 1q3t_A 232 AEKR 235 (236)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7653
No 94
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.10 E-value=3.4e-09 Score=89.32 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=94.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe-------cCCCCChHHHHHHHHH-----hCCCCCCHHHHH-HHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR-------FPDRTTSVGQMISAYL-----SNQSHLDDHTIH-LLF 121 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~-------~p~~~~~~g~~ir~~l-----~~~~~~~~~~~~-ll~ 121 (259)
-.-|.++|.+||||||+++.|++ + |++++..+ .|+ ++.-+.|.+.+ ...+.++..... ++|
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~---g~~vidaD~ia~~l~~~~--~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF 82 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R---GASLVDTDLIAHRITAPA--GLAMPAIEQTFGPAFVAADGSLDRARMRALIF 82 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHHTSTT--CTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C---CCcEEECcHHHHHHhcCC--cHHHHHHHHHhChhhcCCCCCCcHHHHHHHHh
Confidence 35699999999999999999987 4 77777532 222 22223333332 223456554332 233
Q ss_pred HH-hHHHHH---------HHHHHHHh--cCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHH
Q 024986 122 SA-NRWEKR---------SMMEAKLK--AGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAA 189 (259)
Q Consensus 122 ~a-~r~~~~---------~~i~~~l~--~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~ 189 (259)
.. .....+ ..+...+. .+.+||+|--+. |.. ..|. ...|.+|++++|+++..
T Consensus 83 ~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL----~E~-----~~~~-------~~~D~vi~V~ap~e~r~ 146 (210)
T 4i1u_A 83 SDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLL----VES-----RNWK-------ARCDRVLVVDCPVDTQI 146 (210)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTC----TTC-----HHHH-------HHCSEEEEEECCHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecc----ccc-----CCcc-------ccCCeEEEEECCHHHHH
Confidence 21 111111 12222222 234667663221 210 1111 23799999999999999
Q ss_pred hhcCCCCCCcchHHHHHHHHHH-----HHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHHHHh
Q 024986 190 ERGGYGGERYEHLEFQRKVAQC-----YQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLDQVT 245 (259)
Q Consensus 190 ~R~~~R~d~~e~~~~~~rv~~~-----y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~~l~ 245 (259)
+|+..|+ .+...+...++..+ +...++ .+||++ ++++++.++|.+.+..++.
T Consensus 147 ~Rl~~Rd-g~s~eea~~ri~~Q~~~eek~~~AD---~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 147 ARVMQRN-GFTREQVEAIIARQATREARLAAAD---DVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HHHHHHH-CCCHHHHHHHHHHSCCHHHHHHTCS---EEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHcCChHHHHHhCC---EEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9998763 23223444444332 112222 688999 9999999999998887654
No 95
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.09 E-value=1.6e-08 Score=83.47 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=44.4
Q ss_pred CCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHH---HHHhh-hC-CCeEEEcCCC-CHHHHHHHHHHHHH
Q 024986 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQ---CYQML-RD-SSWKIIDACQ-SIEDVEKQLKEIVL 241 (259)
Q Consensus 173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~---~y~~l-~~-~~~~vIDa~~-s~eev~~~I~~~i~ 241 (259)
+.+|++|||++|+++..+|+..|.. ....+..+.+.+ .|... .. ..+++||++. +++++.++|.+.+.
T Consensus 134 ~~~d~~i~l~a~~e~~~~R~~~r~~-~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 134 PEAAHKFYLTASPEVRAWRRARERP-QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHTSS-SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCHHHHHHHHHhhcc-cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999876532 111222222222 22111 12 3458999985 99999999988763
No 96
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.06 E-value=2.8e-09 Score=88.59 Aligned_cols=159 Identities=12% Similarity=0.140 Sum_probs=83.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChH---HHHHHHHHhC----CCCCCHHHHH-HHHH-H
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSV---GQMISAYLSN----QSHLDDHTIH-LLFS-A 123 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~---g~~ir~~l~~----~~~~~~~~~~-ll~~-a 123 (259)
..-.+|.|+|++||||||+++.|++.+ |+.++..+.-. .... -+.+.+.+-. ++.++..... ..|. .
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l---g~~vid~D~~~-~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~ 85 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY---GAHVVNVDRIG-HEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESR 85 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHH-HHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc---CCEEEECcHHH-HHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCH
Confidence 356899999999999999999999987 56665422100 0000 0111111110 2223322111 1111 0
Q ss_pred h---HHHH------HHHHHHHHhc-CCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcC
Q 024986 124 N---RWEK------RSMMEAKLKA-GTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGG 193 (259)
Q Consensus 124 ~---r~~~------~~~i~~~l~~-g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~ 193 (259)
. ..+. ...+...+.. +.+||+|.... +.. .|. ...|.+||+++|+++..+|+.
T Consensus 86 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll----~e~------~~~-------~~~d~vi~v~a~~e~r~~Rli 148 (192)
T 2grj_A 86 ENLKKLELLVHPLMKKRVQEIINKTSGLIVIEAALL----KRM------GLD-------QLCDHVITVVASRETILKRNR 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECTTT----TTT------TGG-------GGCSEEEEEECCHHHHHHHCS
T ss_pred HHHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEEece----eec------ChH-------HhCCEEEEEECCHHHHHHHHH
Confidence 0 0000 0112222222 55788874211 110 111 235899999999999999982
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhCCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 194 YGGERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 194 ~R~d~~e~~~~~~rv~~~y~~l~~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
. . + +...|.+-....-++||++++++++.++|.+.+...
T Consensus 149 ~------~---q--~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 149 E------A---D--RRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp S------H---H--HHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred H------h---c--CCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 1 0 0 000011111122367898899999999999887654
No 97
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.05 E-value=2.9e-09 Score=89.00 Aligned_cols=66 Identities=5% Similarity=-0.065 Sum_probs=42.0
Q ss_pred CEEEEEeCCHHHHHhhcCCCCCC-cch-HHH----HHHHHHHHHhhhC-------CCeEEEcCC-CCHHHHHHHHHHHHH
Q 024986 176 DSVLYLDIPPEKAAERGGYGGER-YEH-LEF----QRKVAQCYQMLRD-------SSWKIIDAC-QSIEDVEKQLKEIVL 241 (259)
Q Consensus 176 dlvI~Ld~~~e~~~~R~~~R~d~-~e~-~~~----~~rv~~~y~~l~~-------~~~~vIDa~-~s~eev~~~I~~~i~ 241 (259)
.+.|||++|+++..+|+..+... .+. .+. .+.-...|....+ ..-++||++ .+++++++.|.+.+.
T Consensus 118 ~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 118 MISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence 48999999999999998643211 111 111 1122234544311 124789986 699999999998775
No 98
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.05 E-value=2e-10 Score=94.93 Aligned_cols=169 Identities=14% Similarity=0.184 Sum_probs=70.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeE-EEEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSV-ELWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFS 122 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v-~~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~ 122 (259)
.+|.+|+|.|++||||||+++.|+..+.. .|+.+ ...+.|..+... .+.+..+...+..+.. ..+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 79 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEY----AEYV 79 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE----EEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEE----EeEC
Confidence 47899999999999999999999987722 22222 112222100000 0111121111100000 0000
Q ss_pred HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCC-EEEEEe-CCHHHHHhhcCCCCCCc
Q 024986 123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPD-SVLYLD-IPPEKAAERGGYGGERY 199 (259)
Q Consensus 123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~Pd-lvI~Ld-~~~e~~~~R~~~R~d~~ 199 (259)
.+.+.. ...+...+..|..||+|..+... ..+. ... || .++|+. .+++++.+|+..|++.
T Consensus 80 ~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-----------~~~~---~~~--~~~~~i~~~~~~~~~~~~Rl~~R~~~- 142 (207)
T 2j41_A 80 GNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-----------KQVR---KKF--PDALFIFLAPPSLEHLRERLVGRGTE- 142 (207)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCGGGH-----------HHHH---HHC--TTSEEEEEECCC---------------
T ss_pred CeecCCCHHHHHHHHHcCCeEEEEECHHHH-----------HHHH---Hhc--CCeEEEEEECCCHHHHHHHHHhcCCC-
Confidence 000000 12345566778899999753210 1111 112 45 344443 4577999999877532
Q ss_pred chHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHHH
Q 024986 200 EHLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQV 244 (259)
Q Consensus 200 e~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~l 244 (259)
...++.+++...+.... ..+++ |+++ +++++.++|.+.+....
T Consensus 143 ~~~~~~~rl~~~~~~~~~~~~~d~v-I~n~-~~e~~~~~i~~~l~~~~ 188 (207)
T 2j41_A 143 SDEKIQSRINEARKEVEMMNLYDYV-VVND-EVELAKNRIQCIVEAEH 188 (207)
T ss_dssp -------------CGGGGGGGCSEE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCEE-EECC-CHHHHHHHHHHHHHHhh
Confidence 22345556655543322 23454 5555 89999999999987654
No 99
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.02 E-value=1.7e-09 Score=93.06 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=43.0
Q ss_pred CCEEEEEeCCHHHHHhhcCCCC-----CCcch--HHHHHHHHHHHHhh----hC-CCeEEE----cCCCCHHHHHHHHHH
Q 024986 175 PDSVLYLDIPPEKAAERGGYGG-----ERYEH--LEFQRKVAQCYQML----RD-SSWKII----DACQSIEDVEKQLKE 238 (259)
Q Consensus 175 PdlvI~Ld~~~e~~~~R~~~R~-----d~~e~--~~~~~rv~~~y~~l----~~-~~~~vI----Da~~s~eev~~~I~~ 238 (259)
+|++|||++|++++.+|+..|. ...+. ..+..+....|... .. .+ ++| |++.+++++.++|.+
T Consensus 151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~id~~~s~e~v~~~I~~ 229 (252)
T 1uj2_A 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD-VIIPRGADNLVAINLIVQHIQD 229 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCS-EEEETGGGCHHHHHHHHHHHHH
T ss_pred cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCc-EEEecCCCChhHHHHHHHHHHH
Confidence 5899999999999999986542 11121 11222222224321 11 23 345 888899999999999
Q ss_pred HHHHHHh
Q 024986 239 IVLDQVT 245 (259)
Q Consensus 239 ~i~~~l~ 245 (259)
.+...+.
T Consensus 230 ~l~~~~~ 236 (252)
T 1uj2_A 230 ILNGGPS 236 (252)
T ss_dssp HHHC---
T ss_pred HHccchh
Confidence 8876554
No 100
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.99 E-value=1.6e-09 Score=89.63 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=90.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHhH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSANR 125 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~r 125 (259)
+.|+|.||+||||||+++.|.+.+.. -++++. .++.|..+..- -+.+.++..++. +-.++ .+.-+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~-flE~~---~~~g~~ 77 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNE-FIEWA---QFSGNY 77 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEE---EETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCC-EEEEE---EEcCce
Confidence 46999999999999999999888753 233333 34555422111 122222222221 00000 000011
Q ss_pred HHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCC-CCCEEEEEeCCHHHHHhhcCCCCCCcchHH
Q 024986 126 WEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL-APDSVLYLDIPPEKAAERGGYGGERYEHLE 203 (259)
Q Consensus 126 ~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~-~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~ 203 (259)
|.. ...+...+++|..||+|-.+. -+.++....+ .+..++.+-.+.+++.+|+..|+..- ..+
T Consensus 78 YGt~~~~v~~~l~~g~~vil~id~~--------------g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~-~e~ 142 (186)
T 1ex7_A 78 YGSTVASVKQVSKSGKTCILDIDMQ--------------GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTET-EES 142 (186)
T ss_dssp EEEEHHHHHHHHHHTSEEEEECCHH--------------HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSC-HHH
T ss_pred eeeecceeeehhhCCCEEEecCCHH--------------HHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCC-HHH
Confidence 111 234566778899999874322 1222222222 34455566667889999998775432 234
Q ss_pred HHHHHHHHHHhhh-----CCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 204 FQRKVAQCYQMLR-----DSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 204 ~~~rv~~~y~~l~-----~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
..+|+..+-.++. ..+++++|. ++++.+++|.++|.
T Consensus 143 i~~Rl~~a~~e~~~~~~~~fD~vIvNd--dle~a~~~l~~iI~ 183 (186)
T 1ex7_A 143 INKRLSAAQAELAYAETGAHDKVIVND--DLDKAYKELKDFIF 183 (186)
T ss_dssp HHHHHHHHHHHHHHHTTTCSSEEEECS--SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccCCcEEEECc--CHHHHHHHHHHHHH
Confidence 5566665554442 235677764 69999999988764
No 101
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.95 E-value=1.4e-08 Score=84.79 Aligned_cols=70 Identities=24% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCCCCEEEEEeCCHHHHHhhcC----CCCCCcchHHHHHHHHHH-HH-------hhhC-CCeEEEcCC-CCHHHHHHHHH
Q 024986 172 LLAPDSVLYLDIPPEKAAERGG----YGGERYEHLEFQRKVAQC-YQ-------MLRD-SSWKIIDAC-QSIEDVEKQLK 237 (259)
Q Consensus 172 ~~~PdlvI~Ld~~~e~~~~R~~----~R~d~~e~~~~~~rv~~~-y~-------~l~~-~~~~vIDa~-~s~eev~~~I~ 237 (259)
++..|++|||++|++++.+|+. .|+......+..+++.+. |. .+.. ...++||++ .++++++++|.
T Consensus 133 ~~~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~ 212 (219)
T 2h92_A 133 LPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEIL 212 (219)
T ss_dssp CTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHH
T ss_pred cCCCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHH
Confidence 3456899999999999999963 233210112333333322 11 1111 244899987 59999999999
Q ss_pred HHHH
Q 024986 238 EIVL 241 (259)
Q Consensus 238 ~~i~ 241 (259)
+.+.
T Consensus 213 ~~l~ 216 (219)
T 2h92_A 213 AMVS 216 (219)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 102
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.93 E-value=3.7e-08 Score=83.71 Aligned_cols=67 Identities=10% Similarity=0.042 Sum_probs=43.0
Q ss_pred CEEEEEeCCHHHHHhhcCCCCCC-cc-hHH----HHHHHHHHHHhhh-----C--CCeEEEcCC-CCHHHHHHHHHHHHH
Q 024986 176 DSVLYLDIPPEKAAERGGYGGER-YE-HLE----FQRKVAQCYQMLR-----D--SSWKIIDAC-QSIEDVEKQLKEIVL 241 (259)
Q Consensus 176 dlvI~Ld~~~e~~~~R~~~R~d~-~e-~~~----~~~rv~~~y~~l~-----~--~~~~vIDa~-~s~eev~~~I~~~i~ 241 (259)
.+.|||++|+++..+|+..+... .+ ..+ ..+.....|.... + ..-++||++ .+++++++.|.+.+.
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~ 217 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR 217 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence 58999999999999998643221 11 111 1122233454321 1 123789986 699999999999886
Q ss_pred H
Q 024986 242 D 242 (259)
Q Consensus 242 ~ 242 (259)
.
T Consensus 218 ~ 218 (223)
T 3hdt_A 218 L 218 (223)
T ss_dssp H
T ss_pred H
Confidence 4
No 103
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.90 E-value=1.2e-08 Score=85.11 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=81.7
Q ss_pred cCCCCCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH--------HHHHHHHHhCCCCCCHHHH
Q 024986 48 IGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV--------GQMISAYLSNQSHLDDHTI 117 (259)
Q Consensus 48 ~~~~~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~ 117 (259)
++....+|.+|+|.||+||||||+++.|.+.+.. ..+.+. .++.|..+..- -+.+++.+..+. +-.++
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~-fle~~- 89 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANE-FLEFG- 89 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTC-EEEEE-
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhh-hhhhh-
Confidence 5556678999999999999999999999987752 112222 23444321100 111222221110 00000
Q ss_pred HHHHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCC
Q 024986 118 HLLFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG 196 (259)
Q Consensus 118 ~ll~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~ 196 (259)
.+..+.|.. ...+...+++|..||+|-.+.. +.++....+.| ++||+. ||.. +|..
T Consensus 90 --~~~~n~YGt~~~~v~~~l~~G~~vildid~qg--------------~~~~~~~~~~~-~~Ifi~-Pps~--~~~~--- 146 (197)
T 3ney_A 90 --SYQGNMFGTKFETVHQIHKQNKIAILDIEPQT--------------LKIVRTAELSP-FIVFIA-PTDQ--GTQT--- 146 (197)
T ss_dssp --EETTEEEEEEHHHHHHHHHTTCEEEEECCGGG--------------HHHHCSTTTCE-EEEEEE-ECCB--SSCC---
T ss_pred --hhhceecccchhhHHHHHhcCCeEEEEECHHH--------------HHHHHhcCCCc-eEEEEe-CCCc--cccc---
Confidence 000001111 1346677889999999854331 22222233344 567776 6654 1111
Q ss_pred CCcchHHHHHHHHHHHHhhh-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 197 ERYEHLEFQRKVAQCYQMLR-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 197 d~~e~~~~~~rv~~~y~~l~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
+.. ....++....-.+.. ..++++||. ++|+.++++.++|..
T Consensus 147 e~~--~~i~~r~~~~~~~~~~~fd~vivNd--~l~~a~~~l~~ii~~ 189 (197)
T 3ney_A 147 EAL--QQLQKDSEAIRSQYAHYFDLSLVNN--GVDETLKKLQEAFDQ 189 (197)
T ss_dssp HHH--HHHHHHHHHHHHHHGGGCSEEEEES--CHHHHHHHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHHhhccCCCEEEECC--CHHHHHHHHHHHHHH
Confidence 111 122222222111111 256788875 599999999988854
No 104
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.81 E-value=6.5e-08 Score=78.96 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=76.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SMME 133 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~i~ 133 (259)
|.+|+|.|++||||||+++.|+..+. | .+ .+. ++.+..... .+.+.+... .......++.+ ....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g-~~-~i~--------~d~~~~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD--N-SA-YIE--------GDIINHMVV-GGYRPPWES-DELLALTWKNITDLTV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS--S-EE-EEE--------HHHHHTTCC-TTCCCGGGC-HHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC--C-eE-EEc--------ccchhhhhc-cccccCccc-hhHHHHHHHHHHHHHH
Confidence 67899999999999999999987432 2 12 222 222221111 111111110 00000001111 1122
Q ss_pred HHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhh--hccCCCCCEEEEEeCCHHHHHhhcCCCCCC--cchHHHHHHHH
Q 024986 134 AKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAP--EIGLLAPDSVLYLDIPPEKAAERGGYGGER--YEHLEFQRKVA 209 (259)
Q Consensus 134 ~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~--~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~--~e~~~~~~rv~ 209 (259)
.....+..+|+|.... .... +.+..+ .......-.+++|++|++++.+|...|..+ .+. ..... .
T Consensus 68 ~~~~~~~~~ild~~~~-~~~~--------~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~-~~~~~-~ 136 (189)
T 2bdt_A 68 NFLLAQNDVVLDYIAF-PDEA--------EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE-RCLEL-V 136 (189)
T ss_dssp HHHHTTCEEEEESCCC-HHHH--------HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG-GGGHH-H
T ss_pred HHHhcCCcEEEeeccC-HHHH--------HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCH-HHHHH-H
Confidence 2334566788886422 1110 111111 112222345789999999999999876422 111 11222 2
Q ss_pred HHHHhhhCCCeEEEcCC-C---CHHHHHHHHH
Q 024986 210 QCYQMLRDSSWKIIDAC-Q---SIEDVEKQLK 237 (259)
Q Consensus 210 ~~y~~l~~~~~~vIDa~-~---s~eev~~~I~ 237 (259)
+.+..+......+||++ . +++++.++|.
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence 33333333344667765 5 6777777766
No 105
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.80 E-value=1.3e-08 Score=82.98 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=83.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCC---CCCCHHHHHHHHHHhHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQ---SHLDDHTIHLLFSANRWEK 128 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~---~~~~~~~~~ll~~a~r~~~ 128 (259)
..+|.+|+|.|++||||||+++.|+..+. ...+.+. + +.+....... +.+......-.. -.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~---~g~i~i~----~----d~~~~~~~~~~~~~~~~~~~~~~~~---v~~~ 71 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG---VPKVHFH----S----DDLWGYIKHGRIDPWLPQSHQQNRM---IMQI 71 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEEC----T----THHHHTCCSSCCCTTSSSHHHHHHH---HHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC---CCeEEEc----c----cchhhhhhcccccCCccchhhhhHH---HHHH
Confidence 45789999999999999999999988632 2223322 1 1111111111 011110000000 0011
Q ss_pred HH-HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCc-chHHHHH
Q 024986 129 RS-MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY-EHLEFQR 206 (259)
Q Consensus 129 ~~-~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~-e~~~~~~ 206 (259)
+. ........|..+++|..+. .. ++ +.+.. ...+-.++++..+.+++.+|+..|.... .+.+..+
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~-~~------~l--~~~~~----~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~ 138 (191)
T 1zp6_A 72 AADVAGRYAKEGYFVILDGVVR-PD------WL--PAFTA----LARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVA 138 (191)
T ss_dssp HHHHHHHHHHTSCEEEECSCCC-TT------TT--HHHHT----TCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHH
T ss_pred HHHHHHHHhccCCeEEEeccCc-HH------HH--HHHHh----cCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHH
Confidence 10 0111234566677776432 10 01 11111 1223368999999999999987653222 1223333
Q ss_pred HHHHHHHhhhCCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 207 KVAQCYQMLRDSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 207 rv~~~y~~l~~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
.+.+.+..+.....++||++ .++++++++|.+.+..
T Consensus 139 ~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~ 175 (191)
T 1zp6_A 139 DLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQS 175 (191)
T ss_dssp HHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred HHHHHHhccCcccccEEECCCCCHHHHHHHHHHHHHh
Confidence 33333322222223567775 7999999999888754
No 106
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.79 E-value=6.5e-08 Score=92.49 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=75.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCC-CeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g-~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
.+|.+|+|.|++||||||+++.|+..+...+ ..+..++ ++.+++.+.....+........+ .+.. ..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD--------gD~~~~~l~~~l~f~~~~r~~~~--r~i~--~v 434 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD--------GDIVRRHLSSELGFSKAHRDVNV--RRIG--FV 434 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES--------SHHHHHHTTSSCCCSHHHHHHHH--HHHH--HH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC--------CcHHHHhhccccCCCHHHHHHHH--HHHH--HH
Confidence 4789999999999999999999999997543 2343232 23333322222223321100000 0100 11
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQC 211 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e~~~~~~rv~~~ 211 (259)
.+.....+.++|.......... .+....+..... +.+.|||++|++++.+|...+ -|.. .-...+.+.
T Consensus 435 ~q~l~~~~~ivi~~~~~~~~~~--------r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~r~--l~~~-~~~~~i~~l 502 (552)
T 3cr8_A 435 ASEITKNRGIAICAPIAPYRQT--------RRDVRAMIEAVG-GFVEIHVATPIETCESRDRKG--LYAK-ARAGLIPEF 502 (552)
T ss_dssp HHHHHHTTCEEEECCCCCCHHH--------HHHHHHHHHTTS-EEEEEEECC----------------------------
T ss_pred HHHHHhcCCEEEEecCCccHHH--------HHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcccc--cccc-ccHhHHHHH
Confidence 1222345777777542100000 011222222222 458999999999999997531 1110 000112222
Q ss_pred HHh---hh--CCCeEEEcCC-CCHHHHHHHHHHHHHH
Q 024986 212 YQM---LR--DSSWKIIDAC-QSIEDVEKQLKEIVLD 242 (259)
Q Consensus 212 y~~---l~--~~~~~vIDa~-~s~eev~~~I~~~i~~ 242 (259)
|.. +. ...-++||++ .++++++++|.+.+.+
T Consensus 503 ~~~r~~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 503 TGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp ----CCCCCCSSCSEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 211 11 1123788986 7999999999998864
No 107
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.79 E-value=2.5e-08 Score=84.34 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=68.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHH-HHHhhCCCeEEE-EecCCCCChHH--------HHHHHHHhCCCCCCHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLL-SYLEGLGHSVEL-WRFPDRTTSVG--------QMISAYLSNQSHLDDHTIHLLFS 122 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~-~~l~~~g~~v~~-~~~p~~~~~~g--------~~ir~~l~~~~~~~~~~~~ll~~ 122 (259)
.+|.+|+|.||+||||||+++.|. ..+......+.. .+.|..+...| ..+..+...+. +.... .+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~---~~~ 100 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGE-IIEHA---EVF 100 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEEE---EET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCc-eehhh---hhc
Confidence 578999999999999999999999 766321101111 11222110000 11111111100 00000 000
Q ss_pred HhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccC-CCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 024986 123 ANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL-LAPDSVLYLDIPPEKAAERGGYGGERYE 200 (259)
Q Consensus 123 a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~-~~PdlvI~Ld~~~e~~~~R~~~R~d~~e 200 (259)
.+.+.. ...+...+..|..+|+|-.+. ....+...+ +.+..++....+++++.+|+..|+. ..
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~vild~~~~--------------g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~-~~ 165 (231)
T 3lnc_A 101 GNFYGVPRKNLEDNVDKGVSTLLVIDWQ--------------GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA-DD 165 (231)
T ss_dssp TEEEEEECTTHHHHHHHTCEEEEECCHH--------------HHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred cccCCCCHHHHHHHHHcCCeEEEEcCHH--------------HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC-CC
Confidence 000000 012344455677777762211 111112222 2233344455678889999987732 22
Q ss_pred hHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 201 HLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 201 ~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
..+..+++..+..+.. ..+++++ ++ +++++.+++.+++...
T Consensus 166 ~~~i~~rl~~~~~~~~~~~~~d~vI~-n~-~~e~~~~~l~~~i~~~ 209 (231)
T 3lnc_A 166 SEVVEARLKGAAFEISHCEAYDYVIV-NE-DIEETADRISNILRAE 209 (231)
T ss_dssp ------CHHHHHHHHTTGGGSSEEEE-CS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEE-Cc-CHHHHHHHHHHHHHHH
Confidence 2234445555444332 2355555 44 7999999999988764
No 108
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.78 E-value=1e-07 Score=83.76 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=65.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE---EecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHH-
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL---WRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEK- 128 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~---~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~- 128 (259)
.+|.+|+|.|++||||||+++.|++.+.. ++..+. ++.+. ..+.+.++.+.. ..+... ...+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~--~~~~~~~~~~~~----~a~~~~-----~~~~~~~ 98 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQH--PNFDELVKLYEK----DVVKHV-----TPYSNRM 98 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTS--TTHHHHHHHHGG----GCHHHH-----HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhc--hhhHHHHHHccc----hhhhhh-----hHHHHHH
Confidence 46899999999999999999999998742 222221 11111 011111222111 111000 111111
Q ss_pred -HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHH----HhhcC
Q 024986 129 -RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKA----AERGG 193 (259)
Q Consensus 129 -~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~----~~R~~ 193 (259)
...+...+..|..||+|..+.....+ ..+.........+..+++|++|++++ .+|+.
T Consensus 99 ~~~~v~~~l~~g~~vIld~~~~~~~~~--------~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~ 160 (287)
T 1gvn_B 99 TEAIISRLSDQGYNLVIEGTGRTTDVP--------IQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE 160 (287)
T ss_dssp HHHHHHHHHHHTCCEEECCCCCCSHHH--------HHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCHHHH--------HHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 12345566778889999765432111 11212222234455679999999999 88863
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.75 E-value=3.8e-08 Score=80.57 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=69.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEE-ecCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELW-RFPDRTTSV--------GQMISAYLSNQSHLDDHTIHLLFSAN 124 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~-~~p~~~~~~--------g~~ir~~l~~~~~~~~~~~~ll~~a~ 124 (259)
|.+|+|.||+||||||+++.|...+.. .|+.+... +.|..+..- .+.+..+...+. +..+ ..+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~-~~e~---~~~~~~ 76 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNE-FIEW---AQFSGN 76 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTC-EEEE---EEETTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcc-eeeE---EEEece
Confidence 468999999999999999999998763 34444332 223211100 011111111110 0000 000000
Q ss_pred HHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhc-cCCCCCEEEEEeCCH-HHHHhhcCCCCCCcch
Q 024986 125 RWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEI-GLLAPDSVLYLDIPP-EKAAERGGYGGERYEH 201 (259)
Q Consensus 125 r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~-~~~~PdlvI~Ld~~~-e~~~~R~~~R~d~~e~ 201 (259)
.+.. ...+...+++|..||+|--+ ++ ...+.. ..+.+ .+||+..|. +++.+|+..|+..-+
T Consensus 77 ~yg~~~~~i~~~l~~g~~~il~~~~------~g--------~~~l~~~~~~~~-~~i~i~~p~~~~l~~Rl~~Rg~~~~- 140 (186)
T 3a00_A 77 YYGSTVASVKQVSKSGKTCILDIDM------QG--------VKSVKAIPELNA-RFLFIAPPSVEDLKKRLEGRGTETE- 140 (186)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCH------HH--------HHHHHTCGGGCC-EEEEEECSCC----------------
T ss_pred eccCcHHHHHHHHHcCCeEEEEEcH------HH--------HHHHHHhcCCCe-EEEEEECcCHHHHHHHHHhcCCCCH-
Confidence 0000 12355667788888887321 11 111222 22233 568888865 899999987753321
Q ss_pred HHHHHHHHHHHHhh-----hCCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 202 LEFQRKVAQCYQML-----RDSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 202 ~~~~~rv~~~y~~l-----~~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
.+..+++..+..++ ...+++++|. +.++.++++.++|.
T Consensus 141 ~~i~~rl~~~~~~~~~~~~~~~d~vi~nd--~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 141 ESINKRLSAAQAELAYAETGAHDKVIVND--DLDKAYKELKDFIF 183 (186)
T ss_dssp ------------------CCCCSEEEECS--SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcccCCcEEEECc--CHHHHHHHHHHHHH
Confidence 23334444433332 1235666654 79999999988774
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.68 E-value=1.1e-07 Score=77.56 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|.+|+|.||+||||||+++.|...+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999998764
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.68 E-value=1.3e-07 Score=80.05 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=87.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhh--CCCeEEEE-ecCCCCCh--H------HHHHHHHHhCCCCCCHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEG--LGHSVELW-RFPDRTTS--V------GQMISAYLSNQSHLDDHTIHL 119 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~--~g~~v~~~-~~p~~~~~--~------g~~ir~~l~~~~~~~~~~~~l 119 (259)
.+.+|.+++|.||+||||||+++.|...+.. ....+... +.|..+.. . .+.+..+...+ .+-. .+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~-~f~E---~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRD-AFLE---HA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTT-CEEE---EE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcC-HHHH---HH
Confidence 3678999999999999999999999987752 11122222 22211000 0 00111110000 0000 00
Q ss_pred HHHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEE-eCCHHHHHhhcCCCCC
Q 024986 120 LFSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYL-DIPPEKAAERGGYGGE 197 (259)
Q Consensus 120 l~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~L-d~~~e~~~~R~~~R~d 197 (259)
.+....+.. ...+...++.|.++|+| ++ ..-...+...++. ..+|++ .-+.+.+.+|+..|+.
T Consensus 88 ~~~~~~yg~~~~~v~~~l~~G~illLD--LD------------~~~~~~i~~~l~~-~~tI~i~th~~~~l~~Rl~~rG~ 152 (219)
T 1s96_A 88 EVFGNYYGTSREAIEQVLATGVDVFLD--ID------------WQGAQQIRQKMPH-ARSIFILPPSKIELDRRLRGRGQ 152 (219)
T ss_dssp EETTEEEEEEHHHHHHHHTTTCEEEEE--CC------------HHHHHHHHHHCTT-CEEEEEECSSHHHHHHHHHTTSC
T ss_pred HHHhccCCCCHHHHHHHHhcCCeEEEE--EC------------HHHHHHHHHHccC-CEEEEEECCCHHHHHHHHHHcCC
Confidence 000000000 12456677889999999 22 1222222222333 345555 4477888899866652
Q ss_pred CcchHHHHHHHHHHHHhhh---CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 198 RYEHLEFQRKVAQCYQMLR---DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 198 ~~e~~~~~~rv~~~y~~l~---~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
. ...+..+++..+-.++. ...++++| .++++.++++.++|..
T Consensus 153 ~-~~e~i~~rl~~a~~e~~~~~~~d~~i~N--d~l~~a~~~l~~ii~~ 197 (219)
T 1s96_A 153 D-SEEVIAKRMAQAVAEMSHYAEYDYLIVN--DDFDTALTDLKTIIRA 197 (219)
T ss_dssp S-CHHHHHHHHHHHHHHHTTGGGSSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHhhccCCCEEEEC--cCHHHHHHHHHHHHHH
Confidence 2 12345556655444433 24666665 4799999999998864
No 112
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.66 E-value=2.5e-08 Score=92.13 Aligned_cols=134 Identities=12% Similarity=0.002 Sum_probs=78.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
..++.+|+|.|++||||||+++.|++.++ +.++ .. + . + ..+.. ....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i--~~-D---~----~----------~~~~~----------~~~~ 301 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHV--NR-D---T----L----------GSWQR----------CVSS 301 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEEC--CG-G---G----S----------CSHHH----------HHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEE--cc-c---h----H----------HHHHH----------HHHH
Confidence 35678999999999999999999988773 3222 21 0 0 0 00000 0112
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCC-----CcchHHHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGE-----RYEHLEFQR 206 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d-----~~e~~~~~~ 206 (259)
+...+.+|..||+|....+.... ..+..+......+..+|||++|++++.+|+..|.. .....+.+.
T Consensus 302 ~~~~l~~g~~vIiD~~~~~~~~r--------~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~ 373 (416)
T 3zvl_A 302 CQAALRQGKRVVIDNTNPDVPSR--------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMF 373 (416)
T ss_dssp HHHHHHTTCCEEEESCCCSHHHH--------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHH
T ss_pred HHHHHhcCCcEEEeCCCCCHHHH--------HHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHH
Confidence 34456778889999765432111 11222222334567899999999999999876521 111345556
Q ss_pred HHHHHHHhhh--C--CCeEEEcCC
Q 024986 207 KVAQCYQMLR--D--SSWKIIDAC 226 (259)
Q Consensus 207 rv~~~y~~l~--~--~~~~vIDa~ 226 (259)
++...|+... + ..++.|+-.
T Consensus 374 ~~~~~~e~P~~~E~fd~v~~v~~~ 397 (416)
T 3zvl_A 374 SYRKQFEPPTLAEGFLEILEIPFR 397 (416)
T ss_dssp HHHHHCCCCCGGGTCSEEEEECCC
T ss_pred HHHHhcCCCCcccCCcEEEEEecc
Confidence 6666665432 1 234556643
No 113
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.65 E-value=2.9e-08 Score=85.43 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=26.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+|+|.|++||||||+++.|++.++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999999999885
No 114
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.53 E-value=1.1e-06 Score=72.82 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=33.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|.+|+|.|++||||||+++.|...+...|..+....
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 457899999999999999999999999987777766543
No 115
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.50 E-value=2.2e-06 Score=81.36 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=33.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+.+|++.|++||||||+++.|+++|+..++.+..++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 45689999999999999999999999998887776554
No 116
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.25 E-value=1.6e-05 Score=65.60 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|.+++|.||+||||||+++.|...+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999998775
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.24 E-value=7.6e-06 Score=69.67 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+|+|.|+.||||||+++.|+..++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999999999885
No 118
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.08 E-value=2.1e-05 Score=65.62 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=27.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHS 85 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~ 85 (259)
.+.++|+|+|.+||||+|+++.|.+.++..++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~ 41 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCA 41 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEE
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCce
Confidence 356799999999999999999999988543333
No 119
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.96 E-value=6.4e-06 Score=73.91 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=25.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.++++|+|.||.||||||++..|+++++
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3668999999999999999999999885
No 120
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.87 E-value=0.00022 Score=66.53 Aligned_cols=38 Identities=29% Similarity=0.412 Sum_probs=31.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|++.|++||||||+++.|++.+...+++...+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 35678999999999999999999999987777666543
No 121
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.72 E-value=0.00036 Score=61.39 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=85.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCCh---------HHHHHHHHHhCCCCCCHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTS---------VGQMISAYLSNQSHLDDHTIHLL 120 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~---------~g~~ir~~l~~~~~~~~~~~~ll 120 (259)
+..|++|+|.|| ||+|+++.|.+.+.. -++++. .++.|..+.. --+.+......+. +-.++ .
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~-flE~~---~ 174 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHK-FIEAG---Q 174 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC-EEEEE---E
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCC-cEEEE---E
Confidence 457889999998 799999999987752 234443 3455542211 0122222222221 00000 0
Q ss_pred HHHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCC
Q 024986 121 FSANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGER 198 (259)
Q Consensus 121 ~~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~ 198 (259)
+..+.|.. ...|...+++|..||+|-.+.. +.++......| ++||+..| ++++.+ +..|+..
T Consensus 175 ~~g~~YGt~~~~V~~~~~~G~~vildid~~g--------------~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~ 238 (295)
T 1kjw_A 175 YNSHLYGTSVQSVREVAEQGKHCILDVSANA--------------VRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITE 238 (295)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEECCCTTH--------------HHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSCH
T ss_pred EcCcEeeeeHHHHHHHHhcCCeEEEEeCHHH--------------HHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCCH
Confidence 00001111 2346677788999999843321 11222223456 88898877 555544 7666432
Q ss_pred cchHHHHHHHHHHHH-hh--h-CCCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 199 YEHLEFQRKVAQCYQ-ML--R-DSSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 199 ~e~~~~~~rv~~~y~-~l--~-~~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+..+++..+-. ++ . ...++++| + ++++.++++.++|..
T Consensus 239 ---~~i~~rl~~a~~~e~~~~~~fd~vivN-d-~le~a~~~l~~ii~~ 281 (295)
T 1kjw_A 239 ---EQARKAFDRATKLEQEFTECFSAIVEG-D-SFEEIYHKVKRVIED 281 (295)
T ss_dssp ---HHHHHHHHHHHHHHHHHGGGCSEEECC-S-SHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhccccCeEEEEC-c-CHHHHHHHHHHHHHh
Confidence 234445444321 22 1 13555443 3 799999999988864
No 122
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.72 E-value=1.6e-05 Score=69.80 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=28.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++.+|+|.|++||||||+++.|++.++..|+.+..+.
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 36789999999999999999999999986666554443
No 123
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.66 E-value=0.0015 Score=52.25 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHH-HH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKR-SM 131 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~-~~ 131 (259)
.+|-+++|.|++||||||+++.+. .|..+. . ++.++.++.... ......... ++.. ..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~-----~~~~~~--~--------~d~~~g~~~~~~-~~~~~~~~~-----~~~~~~~ 65 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF-----KPTEVI--S--------SDFCRGLMSDDE-NDQTVTGAA-----FDVLHYI 65 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS-----CGGGEE--E--------HHHHHHHHCSST-TCGGGHHHH-----HHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc-----cCCeEE--c--------cHHHHHHhcCcc-cchhhHHHH-----HHHHHHH
Confidence 478999999999999999999743 122221 1 233444433211 010000000 0011 11
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccC-CCCCEEEEEeCCHHHHHhhcCCCCC
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL-LAPDSVLYLDIPPEKAAERGGYGGE 197 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~-~~PdlvI~Ld~~~e~~~~R~~~R~d 197 (259)
....+..|..++.|......-. + .+++ .+...+ ..| -+++||-|...+-.|...|.+
T Consensus 66 ~~~~~~~g~~~~~~~~~~~s~g-~------~qrv-~iAral~~~p-~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 66 VSKRLQLGKLTVVDATNVQESA-R------KPLI-EMAKDYHCFP-VAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp HHHHHHTTCCEEEESCCCSHHH-H------HHHH-HHHHHTTCEE-EEEEECCCHHHHHHHHHTCSS
T ss_pred HHHHHhCCCeEEEECCCCCHHH-H------HHHH-HHHHHcCCcE-EEEEEeCCHHHHHHHHhcccC
Confidence 2233456777777765432111 0 1222 122223 334 688899999998877665543
No 124
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.64 E-value=0.00037 Score=61.26 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=85.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEE-EecCCCCChH---------HHHHHHHHhCCCCCCHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVEL-WRFPDRTTSV---------GQMISAYLSNQSHLDDHTIHLLF 121 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~-~~~p~~~~~~---------g~~ir~~l~~~~~~~~~~~~ll~ 121 (259)
...+.|||.|| ||+|+++.|.+.+... ++++.+ ++.|..+..- -+.+.....++. +-.++ .+
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~-flE~a---~~ 170 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHL-FIEAG---QY 170 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC-EEEEE---EE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCc-eEEEE---EE
Confidence 56678999988 5999999999887642 445543 4444322110 122222222211 00000 00
Q ss_pred HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCCCCc
Q 024986 122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGGERY 199 (259)
Q Consensus 122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~d~~ 199 (259)
..+.|.. ...+...+++|..||+|=-+ +-+.++....+.| ++||+..| .+++.+|+..|++.-
T Consensus 171 ~gn~YGT~~~~V~~~~~~gk~viLdid~--------------qg~~~lk~~~~~p-i~IFI~PpS~e~L~~r~~~r~~e~ 235 (292)
T 3tvt_A 171 NDNLYGTSVASVREVAEKGKHCILDVSG--------------NAIKRLQVAQLYP-VAVFIKPKSVDSVMEMNRRMTEEQ 235 (292)
T ss_dssp TTEEEEEEHHHHHHHHHHTCEEEECCCT--------------HHHHHHHHTTCCC-EEEEECCSCHHHHHHTCTTSCTTH
T ss_pred ccceeEEehHHHHHHHHcCCcEEEeccc--------------hhhhhcccccccc-eEEEEECCCHHHHHHHHhCCCchh
Confidence 0001111 23566777889999998322 1233333444556 66777664 566677776554421
Q ss_pred chHHHHHHHHHHHHhhhC-CCeEEEcCCCCHHHHHHHHHHHHHHH
Q 024986 200 EHLEFQRKVAQCYQMLRD-SSWKIIDACQSIEDVEKQLKEIVLDQ 243 (259)
Q Consensus 200 e~~~~~~rv~~~y~~l~~-~~~~vIDa~~s~eev~~~I~~~i~~~ 243 (259)
..+...+....-.+..+ ..++++| .++|+.+++|.++|...
T Consensus 236 -~~~~~~r~~k~e~e~~~~fD~vIvN--ddle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 236 -AKKTYERAIKMEQEFGEYFTGVVQG--DTIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp -HHHHHHHHHHHHHHHTTTCSEEECC--SSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhhhCCEEEEC--cCHHHHHHHHHHHHHHh
Confidence 12233333222122222 3455554 36999999998887654
No 125
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.57 E-value=9e-05 Score=60.04 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=31.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++|+|.|++||||||++..|...|...|+++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999999999998898876554
No 126
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.57 E-value=4.8e-05 Score=62.68 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|.+|+|.|++||||||+++.|+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999999999886
No 127
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.55 E-value=9e-05 Score=61.27 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG 83 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g 83 (259)
..+|.+|+|.|++||||||+++.|...+...|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 35789999999999999999999999997544
No 128
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.45 E-value=7.1e-05 Score=64.19 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
++|+|.|++||||||+++.|++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4899999999999999999999885
No 129
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.40 E-value=0.00021 Score=58.03 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+-++|+|.|++||||||+++.|...+...|+++-.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 3568999999999999999999999988888765443
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=0.00016 Score=58.17 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELW 89 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~ 89 (259)
.+|..++|.|++|+||||+++.++..+. ..|..+..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3578999999999999999999999886 567655543
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.32 E-value=9.8e-05 Score=61.77 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
...+|.+++|.||+||||||+++.|...+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999999876
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.31 E-value=0.00026 Score=55.73 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=32.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
+|..++|.|++|+||||+++.+...+...|.+++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 68889999999999999999999999777877766653
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.27 E-value=0.0002 Score=62.76 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLG 83 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g 83 (259)
..++.+|+|.|++||||||+++.|.+.+...|
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 35788999999999999999999999997543
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.26 E-value=0.00037 Score=57.73 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=32.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++..|+|.|++|+||||+++.+++.+...+..+..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5678999999999999999999999988777776655
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.26 E-value=0.00067 Score=60.52 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
.+|.+|+|.|+.||||||+++.|+..+...+.++.....+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 5789999999999999999999999998877777665433
No 136
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.25 E-value=0.0006 Score=60.23 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=33.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.+|+|.|++||||||++..|+..+...|.++....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46889999999999999999999999987787776654
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.23 E-value=0.00042 Score=56.51 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
+|.++++.|++|+||||++-.++.++...|.++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999988888877778777654
No 138
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.21 E-value=0.0018 Score=63.58 Aligned_cols=163 Identities=11% Similarity=0.104 Sum_probs=85.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEE-EEecCCCCChH---------HHHHHHHHhCCCCCCHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVE-LWRFPDRTTSV---------GQMISAYLSNQSHLDDHTIHLLF 121 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~-~~~~p~~~~~~---------g~~ir~~l~~~~~~~~~~~~ll~ 121 (259)
..+++|+|.|| ||+|+++.|.+.+.. .++.+. .++.|..+..- -+.+.+...++. +-.++ .+
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~-flE~~---~~ 601 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHK-FIEAG---QY 601 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCC-ceEEE---EE
Confidence 46789999999 499999999987753 233333 23444311110 112222222211 10000 00
Q ss_pred HHhHHHH-HHHHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHhhcCCCCCCcc
Q 024986 122 SANRWEK-RSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYE 200 (259)
Q Consensus 122 ~a~r~~~-~~~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~R~~~R~d~~e 200 (259)
.-+.|.. ...|+..+++|.+||+|-.+ .-+.++......| ++||+..|.-..++++..|+..
T Consensus 602 ~g~~YGt~~~~v~~~~~~g~~~ildi~~--------------~~~~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~t~-- 664 (721)
T 2xkx_A 602 NSHLYGTSVQSVREVAEQGKHCILDVSA--------------NAVRRLQAAHLHP-IAIFIRPRSLENVLEINKRITE-- 664 (721)
T ss_pred CCccceeeHHHHHHHHHCCCcEEEeCCH--------------HHHHHHHhcccCC-EEEEEeCCcHHHHHHHhccCCH--
Confidence 0112222 24467778899999998421 1122222223456 8899987644444456655432
Q ss_pred hHHHHHHHHHHHH-hhh--C-CCeEEEcCCCCHHHHHHHHHHHHHH
Q 024986 201 HLEFQRKVAQCYQ-MLR--D-SSWKIIDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 201 ~~~~~~rv~~~y~-~l~--~-~~~~vIDa~~s~eev~~~I~~~i~~ 242 (259)
.+..+++..+-+ ++. . ..++++| + ++|+.++++.++|..
T Consensus 665 -~~~~~rl~~a~~~e~~~~~~fd~vi~N-d-~l~~a~~~l~~~i~~ 707 (721)
T 2xkx_A 665 -EQARKAFDRATKLEQEFTECFSAIVEG-D-SFEEIYHKVKRVIED 707 (721)
T ss_pred -HHHHHHHHHHHHHHHhccccCcEEEEC-c-CHHHHHHHHHHHHHh
Confidence 234445544421 221 1 3455444 3 799999999888764
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.19 E-value=0.00081 Score=62.42 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=34.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
++.+|+|.|++|+||||++..|+..|...|.+|..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 58899999999999999999999999989999876653
No 140
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.15 E-value=0.0011 Score=58.21 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=33.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~~ 91 (259)
.+|.+|+|.|+.|+||||++..|+..+.. .|.+|.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46889999999999999999999999974 7988876553
No 141
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.14 E-value=0.00023 Score=67.30 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|..|+|.|++||||||+++.|+++|..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999986
No 142
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.12 E-value=0.00072 Score=55.64 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|+++++.|+.||||||.+-.++.++...|..|..+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 56899999999999999999999999988899987765
No 143
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.11 E-value=0.00064 Score=57.37 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=34.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.++++.|++|+||||.+-.++.++...|..+..+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 468999999999999999999999999888988877653
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.11 E-value=0.00062 Score=59.92 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|.+|+|.|++||||||+++.|...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999886
No 145
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.09 E-value=0.00079 Score=62.34 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=34.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.++.+|+|.|++||||||++..|+..+...|.+|..+..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 368899999999999999999999999988999876553
No 146
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.08 E-value=0.00026 Score=63.10 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+++|+|.||+||||||++..|+++++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999885
No 147
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.07 E-value=0.00032 Score=57.83 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|++||||||+++.|...+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999999988774
No 148
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.05 E-value=0.00044 Score=61.24 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=27.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|.+|+|.|++||||||+++.|...+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 467899999999999999999999998874
No 149
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.05 E-value=0.00043 Score=61.61 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=26.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..++.+|.|.|++||||||+++.|...+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 346779999999999999999999998863
No 150
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.04 E-value=0.001 Score=55.76 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.+.++.|+.||||||.+-.++.++...|..+..+.+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 568999999999999999999999999989999887763
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.03 E-value=0.00044 Score=56.13 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+.++|.|++||||||+++.|...+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999885
No 152
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.03 E-value=0.00069 Score=59.79 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 36889999999999999999999999987666666543
No 153
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.03 E-value=0.00084 Score=54.69 Aligned_cols=35 Identities=20% Similarity=0.029 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.-|.|.|++|+||||++..++..+...|.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67889999999999999999999987777776554
No 154
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.01 E-value=0.0003 Score=62.53 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
++++|+|.||+||||||++..|++.++
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 567999999999999999999999885
No 155
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.00 E-value=0.00037 Score=62.49 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
++|+|.||+||||||++..|++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 6999999999999999999999986
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.99 E-value=0.00083 Score=55.34 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.+++|.|++||||||++..|+..+...+..+..+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 478899999999999999999999777555556665543
No 157
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.98 E-value=0.0014 Score=57.73 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=32.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357899999999999999999999999987666666543
No 158
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.98 E-value=0.00093 Score=57.59 Aligned_cols=30 Identities=17% Similarity=0.480 Sum_probs=27.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|.+++|.||.||||||+.+.|...+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 457889999999999999999999998864
No 159
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.97 E-value=0.00052 Score=54.71 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|...+.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 36889999999999999999999999884
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.96 E-value=0.0011 Score=52.37 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+..++|.|++|+||||+++.+++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4566889999999999999999999865
No 161
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.90 E-value=0.0012 Score=58.64 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=34.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.+|+|.|+.|+||||++..|+..+...|.+|.....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 578899999999999999999999999888888876653
No 162
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.90 E-value=0.00085 Score=62.68 Aligned_cols=144 Identities=11% Similarity=0.014 Sum_probs=73.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
+.++++|+|.||.|+| ++++|.+.+...... ..++ |..+..-|. ++ .+. -...
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-~~TR-pR~gE~dG~---~Y-----~FT--------------s~~~ 273 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQI-AKSE-PRDAGTDQR---SS-----GII--------------RLHT 273 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-CCCB-C------------------CBC--------------CHHH
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceee-ecCC-CCCcccccc---cC-----Ccc--------------cHHH
Confidence 4578999999999999 888887766543221 1234 431111110 11 010 1234
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCHHHHHh----hcCCCCCCcchH-HHHH
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAE----RGGYGGERYEHL-EFQR 206 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~e~~~~----R~~~R~d~~e~~-~~~~ 206 (259)
|+..+++|.+||+|=-+ +-+.++....+.| ++||+..|--..++ |+.. +.-+.. ..++
T Consensus 274 V~~vl~~Gk~~iLdId~--------------qg~~~l~~~~~~p-~~IFI~PPS~e~L~~~~~rl~~--~see~~~r~~~ 336 (468)
T 3shw_A 274 IKQIIDQDKHALLDVTP--------------NAVDRLNYAQWYP-IVVFLNPDSKQGVKTMRMRLCP--ESRKSARKLYE 336 (468)
T ss_dssp HHHHHTTTCEEEECCCH--------------HHHHHHHHTTCCC-EEEEEECSCHHHHHHHHHHHCT--TCCCCHHHHHH
T ss_pred HHHHHHCCCeEEEEeCH--------------HHHHHHHhcCCCC-EEEEEeCcCHHHHHHHHhccCC--CCHHHHHHHHH
Confidence 66778899999998322 2233344445567 67777765444433 4331 211211 1111
Q ss_pred ---HHHHHHHhhhCCCeEEEcCCCCH-HHHHHHHHHHHHHH
Q 024986 207 ---KVAQCYQMLRDSSWKIIDACQSI-EDVEKQLKEIVLDQ 243 (259)
Q Consensus 207 ---rv~~~y~~l~~~~~~vIDa~~s~-eev~~~I~~~i~~~ 243 (259)
++...|.. ...+++||.+ . ++.++++.++|...
T Consensus 337 ~a~~~e~~~~~--~fD~vIvNdd--l~d~a~~~L~~ii~~~ 373 (468)
T 3shw_A 337 RSHKLRKNNHH--LFTTTINLNS--MNDGWYGALKEAIQQQ 373 (468)
T ss_dssp HHHHHHHHHGG--GCSEEEECBT--TBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc--cCCEEEECCC--cHHHHHHHHHHHHHHh
Confidence 11222222 2467777543 5 47777777776543
No 163
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.86 E-value=0.00053 Score=60.80 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+++|+|.||+||||||++..|++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 467999999999999999999999885
No 164
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.86 E-value=0.00046 Score=55.76 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeE
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV 86 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v 86 (259)
.+|+|.|++||||||+++.|...+...|+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~ 33 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRV 33 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCce
Confidence 4799999999999999999999998876654
No 165
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.00084 Score=55.05 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=25.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLG 83 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g 83 (259)
|.+|+|.|+.||||||+++.|+..+...|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 45789999999999999999999887556
No 166
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.0016 Score=54.24 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++||||||++..++..+...|..+.++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 47889999999999999999988877655676777655
No 167
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.78 E-value=0.0016 Score=58.37 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+...|+|.|.+|+||||++..|+..+...|.++..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 45678999999999999999999999987888876543
No 168
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.77 E-value=0.0014 Score=59.18 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=32.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|.+|+|.|+.||||||++..|+..+...+-++....
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 357899999999999999999999999987666666543
No 169
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.77 E-value=0.0018 Score=56.21 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=32.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~ 90 (259)
..+|-+++|.|++|+||||++..|+..+... |..+..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999999988654 76666554
No 170
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.77 E-value=0.0014 Score=51.86 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+..|+|.|++|+||||+++.+++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556789999999999999999999865
No 171
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.77 E-value=0.0015 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+|-+++|.|++||||||+++.|..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999999984
No 172
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.76 E-value=0.0032 Score=57.43 Aligned_cols=145 Identities=10% Similarity=-0.007 Sum_probs=74.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRSM 131 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~~ 131 (259)
+..+++|+|.||+| +|+++.|.+.+..... ..++.|..+.. ++.+.. | . ....
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~--~~tr~pR~gE~----------dG~~Y~-------F-v----~~~~ 281 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQ--IAKSEPRDAGT----------DQRSSG-------I-I----RLHT 281 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEE--ECCCCCCCSSS----------CCC--C-------C-C----CHHH
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCccccc--cccCCCCCccc----------CCccCC-------c-C----cHHH
Confidence 35789999999998 8999999887654311 22344432110 110000 0 0 1234
Q ss_pred HHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCCH-HHHHhhcCCCC-CCcchH-HHH---
Q 024986 132 MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPP-EKAAERGGYGG-ERYEHL-EFQ--- 205 (259)
Q Consensus 132 i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~~-e~~~~R~~~R~-d~~e~~-~~~--- 205 (259)
|+..+++|..||+|=-+ +-+.++....+.| ++||+..|- +++.+|...+. +.-+.. ..+
T Consensus 282 V~~~~~~Gk~~iLdId~--------------qg~~~l~~~~~~p-~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a 346 (391)
T 3tsz_A 282 IKQIIDQDKHALLDVTP--------------NAVDRLNYAQWYP-IVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS 346 (391)
T ss_dssp HHHHHTTTCEEEECCCH--------------HHHHHHHHTTCCC-EEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCH--------------HHHHHHHhCCCCC-EEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 66778899999998322 2233444445567 677776654 44443311111 221211 111
Q ss_pred HHHHHHHHhhhCCCeEEEcCCCCHH-HHHHHHHHHHHH
Q 024986 206 RKVAQCYQMLRDSSWKIIDACQSIE-DVEKQLKEIVLD 242 (259)
Q Consensus 206 ~rv~~~y~~l~~~~~~vIDa~~s~e-ev~~~I~~~i~~ 242 (259)
.++...|.. ..++++||.+ .+ +.++++.++|..
T Consensus 347 ~~~e~~~~~--~fd~vivNd~--l~~~a~~~l~~ii~~ 380 (391)
T 3tsz_A 347 HKLRKNNHH--LFTTTINLNS--MNDGWYGALKEAIQQ 380 (391)
T ss_dssp HHHHHHHGG--GCSEEEECCT--TCCHHHHHHHHHHHH
T ss_pred HHHHHhccc--cCcEEEECCC--cHHHHHHHHHHHHHH
Confidence 111122222 2467777654 54 567777776654
No 173
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.74 E-value=0.0027 Score=53.67 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+..++++.|..|+||||++..|+..+. .|.++..+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 45678999999999999999999999998 898886654
No 174
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.74 E-value=0.0031 Score=55.37 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=34.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
++.+|++.|+.|+||||++..|+..+...|.++......
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 488999999999999999999999998888888766543
No 175
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.73 E-value=0.00046 Score=57.36 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..|+.|+|.|++|+||||++..|+++..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4678899999999999999999988653
No 176
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.73 E-value=0.0016 Score=56.84 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+..|.|.||+|+|||++++.+++.++ .+++.+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~ 68 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG---INPIMMS 68 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT---CCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEe
Confidence 3456788889999999999999999994 4444443
No 177
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.72 E-value=0.0016 Score=61.30 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=32.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
..+|.+|+|.|+.||||||+++.|+..+...+-.+.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 35789999999999999999999999998766666554
No 178
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.70 E-value=0.0021 Score=57.70 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
..+.+|+|.|++||||||+.+.|...+...+.++...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 3478999999999999999999999887766665443
No 179
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.69 E-value=0.0018 Score=53.09 Aligned_cols=37 Identities=22% Similarity=0.078 Sum_probs=30.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
..+|.+++|.|++||||||++..++. ..|..+.++..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 35789999999999999999999988 33556666553
No 180
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.67 E-value=0.0012 Score=58.26 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
...+|.+++|.|++||||||+++.|...+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 35689999999999999999999999988
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.66 E-value=0.0019 Score=56.73 Aligned_cols=37 Identities=16% Similarity=-0.052 Sum_probs=30.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+.-+.|.|++|+||||+++.++..+...+..+..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567889999999999999999999976667776654
No 182
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.66 E-value=0.0021 Score=57.97 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVEL 88 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~ 88 (259)
++-+|+|.||.||||||+.+.|...+... +-.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 45599999999999999999999988753 444443
No 183
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.64 E-value=0.0011 Score=54.61 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|-+++|.|++||||||+++.|+-.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999987553
No 184
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.63 E-value=0.0011 Score=56.05 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46899999999999999999999976553
No 185
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.63 E-value=0.0012 Score=60.49 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.++|+|.||+||||||++..|++.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC
Confidence 368999999999999999999999964
No 186
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.61 E-value=0.0026 Score=56.79 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=30.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEE
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVEL 88 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~ 88 (259)
..+|.+|+|.|++||||||+.+.|...+...+-++..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i 88 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 88 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence 4678999999999999999999999988765555543
No 187
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.61 E-value=0.0014 Score=59.56 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+|+|.||+||||||+++.|+..+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45788999999999999999999998764
No 188
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.61 E-value=0.0022 Score=60.42 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=32.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++..|+|.|++|+||||++..|+..+...|.++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35678999999999999999999999988888876654
No 189
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.59 E-value=0.0024 Score=57.83 Aligned_cols=31 Identities=16% Similarity=0.450 Sum_probs=27.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
..+|.+|+|.|++||||||+.+.|...+...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3578899999999999999999999988753
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.59 E-value=0.0029 Score=54.82 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH 84 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~ 84 (259)
..+.-|.|.|++|+||||+++.+++.+...++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 34556899999999999999999999976544
No 191
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.58 E-value=0.0032 Score=53.22 Aligned_cols=38 Identities=26% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCccE-EEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGAL-VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~l-IvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|++ |++.|++|+||||++-.++..+...|++|....
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35655 888999999999999999999988999886543
No 192
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.56 E-value=0.0026 Score=58.62 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
.+|-+|+|.|+.||||||+.+.|...+....-.+.....|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 4677999999999999999999999886543345544443
No 193
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.56 E-value=0.0029 Score=55.36 Aligned_cols=38 Identities=32% Similarity=0.403 Sum_probs=33.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
+|.+|+|.|+.|+||||++..|+..+...|.++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 78899999999999999999999999887888776553
No 194
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.55 E-value=0.0029 Score=58.53 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=34.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~ 91 (259)
.++.+|+|.|+.|+||||++..|+..|... |.+|..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 356789999999999999999999999988 999877653
No 195
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.52 E-value=0.0012 Score=55.49 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=24.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35788999999999999999999976553
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.52 E-value=0.0031 Score=56.25 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=32.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
..++.+|+|.|++|+||||+++.|...+...|..+..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 35789999999999999999999999987777766544
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.51 E-value=0.0033 Score=55.33 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=32.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh-hCCCeEEEEec
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE-GLGHSVELWRF 91 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~-~~g~~v~~~~~ 91 (259)
+.-|.|.|++|+|||+++..++..+. ..|+++..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 56788999999999999999999998 88888876553
No 198
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.51 E-value=0.0015 Score=55.33 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45889999999999999999999977654
No 199
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.50 E-value=0.0012 Score=61.06 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=32.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++.+|+|.|++|+||||++..|+..+...|++|..+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4578999999999999999999999987788887654
No 200
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.45 E-value=0.0015 Score=55.50 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999987654
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.44 E-value=0.0018 Score=56.09 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+| |.|.||+|+||||+++.|+..++
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 3456 89999999999999999998774
No 202
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.44 E-value=0.0015 Score=56.20 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999976554
No 203
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.43 E-value=0.0015 Score=55.04 Aligned_cols=29 Identities=34% Similarity=0.443 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35889999999999999999999987664
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.43 E-value=0.0037 Score=56.36 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=33.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.++.|.|++|+||||++..++..+...|..+.++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 478999999999999999999999988777777766543
No 205
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.42 E-value=0.0082 Score=53.30 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEec
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRF 91 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~ 91 (259)
.++|.|++|+||||+++.+...+... +..++.++-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 89999999999999999999999766 566666653
No 206
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.42 E-value=0.0019 Score=55.22 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+++|.|+.||||||+.+.|.-.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 358899999999999999999999764
No 207
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.42 E-value=0.0015 Score=55.74 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=41.0
Q ss_pred CCCCEEEEEeCCHHHHHhhcCCCCCC---cchHHHHHHHHHH-HHh-hh-CCCeEEEcCCCCHHHHHHHHHHHHH
Q 024986 173 LAPDSVLYLDIPPEKAAERGGYGGER---YEHLEFQRKVAQC-YQM-LR-DSSWKIIDACQSIEDVEKQLKEIVL 241 (259)
Q Consensus 173 ~~PdlvI~Ld~~~e~~~~R~~~R~d~---~e~~~~~~rv~~~-y~~-l~-~~~~~vIDa~~s~eev~~~I~~~i~ 241 (259)
...|.+|..+++.+.-.+|+..|+.. ...... .++..+ -.+ +. ...-.+||+++++++..++|.+++.
T Consensus 166 ~~~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~ 239 (241)
T 1dek_A 166 SGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLK 239 (241)
T ss_dssp SSCSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred ccCCEEEEEcCCcHHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHh
Confidence 34689999999999999998766321 000000 011000 001 00 0123688888999999999988764
No 208
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.41 E-value=0.0023 Score=52.24 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
+..++|.|++|+||||+++.+++.+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3588999999999999999999988653
No 209
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0029 Score=55.99 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=30.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC---CCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL---GHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~---g~~v~~~~ 90 (259)
..+..++|.|++|+||||+++.+++.+... +..++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 457789999999999999999999988654 55665554
No 210
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.0052 Score=54.40 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=31.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC------CCeEEEEecC
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL------GHSVELWRFP 92 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~------g~~v~~~~~p 92 (259)
..+..+.|.|++|+||||+++.+.+.+... +..++.++-+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 456789999999999999999999988543 5555555543
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.002 Score=49.93 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE 87 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~ 87 (259)
.+.-|.|.|++|+|||++|+.+.+.....+.+++
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 3445789999999999999999887655455555
No 212
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.40 E-value=0.002 Score=55.60 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+++|.|+.||||||+.+.|.-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 458899999999999999999999775
No 213
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.40 E-value=0.0018 Score=55.21 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35889999999999999999999977654
No 214
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.39 E-value=0.0063 Score=56.11 Aligned_cols=38 Identities=32% Similarity=0.403 Sum_probs=33.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
++.+|+|.|+.|+||||++..|+..+...|.+|.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 67899999999999999999999999888888876653
No 215
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.39 E-value=0.0018 Score=56.26 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999999976553
No 216
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.39 E-value=0.0017 Score=55.76 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45889999999999999999999976553
No 217
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.38 E-value=0.002 Score=55.40 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999999976553
No 218
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.38 E-value=0.0021 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+| |.|.|++|+||||+++.++..+.
T Consensus 49 ~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 49 PKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 455 88999999999999999998775
No 219
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.37 E-value=0.002 Score=55.77 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999977654
No 220
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.37 E-value=0.0018 Score=55.94 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 45889999999999999999999976554
No 221
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.37 E-value=0.0017 Score=55.08 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999999999999999999976553
No 222
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.36 E-value=0.0017 Score=56.09 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35889999999999999999999987654
No 223
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.35 E-value=0.0015 Score=54.59 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4788999999999999999999976553
No 224
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.35 E-value=0.0037 Score=54.07 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+.|.|++|+||||+++.|++.+...+.+++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 46899999999999999999999976555555544
No 225
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.34 E-value=0.0018 Score=55.52 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35889999999999999999999976553
No 226
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.32 E-value=0.003 Score=53.20 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+.-|.|.|++|+||||+++.+++.++ .+++.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~ 71 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMA 71 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEec
Confidence 345578999999999999999999884 3444444
No 227
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0033 Score=60.65 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 46899999999999999999999987553
No 228
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.31 E-value=0.0015 Score=54.33 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
.+|-+++|.|+.||||||+.+.|.-.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999876
No 229
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.0043 Score=55.20 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=30.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC--------CCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL--------GHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~--------g~~v~~~~ 90 (259)
..+..+.|.|++|+||||+++.+++.+... +..++.++
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 346689999999999999999999988543 56666554
No 230
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.29 E-value=0.0021 Score=55.40 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45889999999999999999999976553
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.0025 Score=53.98 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
-|.|.|++|+||||+++.|+..++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 388999999999999999999874
No 232
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.26 E-value=0.0027 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCC
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLG 83 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g 83 (259)
.+.|.|++|+||||+++.+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 389999999999999999999886543
No 233
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.26 E-value=0.027 Score=49.62 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=71.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEecCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHhHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTIHLLFSANRWEKRS 130 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~ll~~a~r~~~~~ 130 (259)
+...+-|||.|| ||+|+.++|.+.+... |++ .|. ...| .++ .+- -..
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~-----v~~-----~r~i----~~~-~fi--------------s~~ 189 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIA-----ETV-----SRTD----SPS-KII--------------KLD 189 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEEC-----CCC------------------CC--------------CHH
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccc-----ccc-----cccc----cCC-Cee--------------cHH
Confidence 344566889999 7999999998877543 111 111 0001 111 111 123
Q ss_pred HHHHHHhcCCeEEEcccccchhhhhcCCCCCHHHHHhhhccCCCCCEEEEEeCC-HHHHHhhcCCCC-CCcchHHHHHHH
Q 024986 131 MMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP-PEKAAERGGYGG-ERYEHLEFQRKV 208 (259)
Q Consensus 131 ~i~~~l~~g~~VI~DR~~~s~~ay~~~~gl~~~~~~~~~~~~~~PdlvI~Ld~~-~e~~~~R~~~R~-d~~e~~~~~~rv 208 (259)
.|+..+++|.+||+|=-+ +-+.++....+.| ++||+..| .+++.+|...+. +.-|. .+++
T Consensus 190 ~V~~vl~~Gk~~ILDId~--------------QGa~~lk~~~~~p-i~IFI~PPS~eeL~~rr~R~~~esee~---~~r~ 251 (308)
T 3kfv_A 190 TVRVIAEKDKHALLDVTP--------------SAIERLNYVQYYP-IVVFFIPESRPALKALRQWLAPASRRS---TRRL 251 (308)
T ss_dssp HHHHHHHTTCEEEECCCH--------------HHHHHHHHTTCCC-EEEEEEESCHHHHHHHHHHHSTTCCCC---HHHH
T ss_pred HHHHHHHCCCcEEEEECH--------------HHHHHHHhcCCCC-EEEEEeCCCHHHHHHHHhcCCCCCHHH---HHHH
Confidence 456778899999998322 2233343444567 56666654 444544422111 22121 1222
Q ss_pred HHHHHh----hh-CCCeEE-EcCCCCHHHHHHHHHHHHHH
Q 024986 209 AQCYQM----LR-DSSWKI-IDACQSIEDVEKQLKEIVLD 242 (259)
Q Consensus 209 ~~~y~~----l~-~~~~~v-IDa~~s~eev~~~I~~~i~~ 242 (259)
.++-.+ .. ..++++ ||. ++|+.++++.++|..
T Consensus 252 ~~aa~eiE~~~~~~FD~vI~VND--dle~A~~~L~~iI~~ 289 (308)
T 3kfv_A 252 YAQAQKLRKHSSHLFTATIPLNG--TSDTWYQELKAIIRE 289 (308)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECS--SSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCcEEEEcCC--CHHHHHHHHHHHHHH
Confidence 222111 11 145666 654 477888888887765
No 234
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.26 E-value=0.0021 Score=54.95 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35888999999999999999999977654
No 235
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.23 E-value=0.0059 Score=51.24 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=30.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.+.+|+|+.||||||.+-.+..++...|..+..+.+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 458999999999999999555556777777888766543
No 236
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.22 E-value=0.0056 Score=54.90 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++|+||||++..++......|..+.++.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47899999999999999999999987766676766554
No 237
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.22 E-value=0.0058 Score=55.03 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=32.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++|+||||+|..++......|..+.++.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999999988877777777655
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.0029 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
.+|.++.|.|++||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999999885
No 239
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.21 E-value=0.003 Score=55.15 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+.-|.|.|++|+||||+++.|+..++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567788999999999999999999874
No 240
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.21 E-value=0.0023 Score=54.83 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35788999999999999999999987654
No 241
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.20 E-value=0.0023 Score=55.62 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35889999999999999999999977654
No 242
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.19 E-value=0.0043 Score=51.25 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh-----hCC-CeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE-----GLG-HSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~-----~~g-~~v~~~~ 90 (259)
.++++.|+|++|||||+.|..+...+. ..| ..+...+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~ 46 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTN 46 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence 356999999999999999988655442 446 5554444
No 243
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.17 E-value=0.0032 Score=53.92 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+.-|.|.|++|+||||+++.++..++
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 455688899999999999999999874
No 244
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.16 E-value=0.003 Score=56.98 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||+||||||+.+.|+-.+.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35889999999999999999999987654
No 245
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.15 E-value=0.0031 Score=54.38 Aligned_cols=34 Identities=15% Similarity=-0.010 Sum_probs=26.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+.-|.|.|++|+||||+++.++..+. ..+..+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~---~~~~~i~ 86 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS---ATFLNIS 86 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEee
Confidence 456788999999999999999999874 3444443
No 246
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.12 E-value=0.0033 Score=55.76 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+.|.||+|+||||+++.++..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5689999999999999999999885
No 247
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.11 E-value=0.0065 Score=58.15 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=32.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+.+++|.|++|+||||++..|...+...|..+....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4678999999999999999999999988888887654
No 248
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.10 E-value=0.0033 Score=55.01 Aligned_cols=29 Identities=34% Similarity=0.443 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|.-.+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35889999999999999999999977653
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.09 E-value=0.0035 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~ 80 (259)
|.|.|++|+||||+++.|+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998775
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.07 E-value=0.0042 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.|+|.|++|+||||+++.|++.++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45999999999999999999998864
No 251
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=96.06 E-value=0.067 Score=47.61 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCeEEEcccccchhhhh-cCCCCCHHHHHhhhccCCCCCEEEEEeC-CHHHHHhhcCCCCCCcchHHHHHH
Q 024986 130 SMMEAKLKAGTTLIVDRYSYSGVAFS-SAKGIDIEWCKAPEIGLLAPDSVLYLDI-PPEKAAERGGYGGERYEHLEFQRK 207 (259)
Q Consensus 130 ~~i~~~l~~g~~VI~DR~~~s~~ay~-~~~gl~~~~~~~~~~~~~~PdlvI~Ld~-~~e~~~~R~~~R~d~~e~~~~~~r 207 (259)
+.+....++|..||+|=- .+ ++ .++....+.| ++||+.. +.+++.+|+..|+...+ .....+
T Consensus 220 e~i~~v~~~Gk~vILDID------vQnGa--------~qlk~~~~~~-i~IFI~PPS~eeLe~RL~~RGt~~~-~rl~~a 283 (337)
T 4dey_A 220 ERIFELARTLQLVVLDAD------TINHP--------AQLSKTSLAP-IVVYVKISSPKVLQRLIKSRGKSQA-KHLNVQ 283 (337)
T ss_dssp HHHHHHTTTCCEEEEEET------TCCSG--------GGTTTSSCCC-EEEEECCSCHHHHHHHHHTTCHHHH-TTHHHH
T ss_pred HHHHHHHhCCCEEEEEeC------cHHHH--------HHHHhcCCCC-EEEEEECcCHHHHHHHHHhCCchHH-HHHHHH
Confidence 344555568999999832 22 21 2223344455 4445544 47788889887754211 011111
Q ss_pred HHHHHHhh----hCCCeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Q 024986 208 VAQCYQML----RDSSWKIIDACQSIEDVEKQLKEIVLDQVTACK 248 (259)
Q Consensus 208 v~~~y~~l----~~~~~~vIDa~~s~eev~~~I~~~i~~~l~~~~ 248 (259)
+..+-.++ ...++++||. ++|+.++++.++|..++..-|
T Consensus 284 l~~ae~E~~~~~~~FDyvIVND--dLe~A~~~L~~iI~~~~~~~h 326 (337)
T 4dey_A 284 MVAADKLAQCPPELFDVILDEN--QLEDACEHLADYLEAYWKATH 326 (337)
T ss_dssp HHHHHHHHHSCGGGCSEEECCS--SHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCcccCCEEEECC--CHHHHHHHHHHHHHHHHhccC
Confidence 11111112 1246777764 599999999999999888776
No 252
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.06 E-value=0.0037 Score=56.38 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||+||||||+.+.|+--+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 35889999999999999999999987654
No 253
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0049 Score=54.72 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=26.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|..|.|.|+||+|||++++.+.+.+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47788999999999999999999999964
No 254
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.04 E-value=0.0038 Score=56.81 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||+||||||+.+.|+--+.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 35889999999999999999999987654
No 255
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.03 E-value=0.0081 Score=49.20 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=26.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVE 87 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~ 87 (259)
+.+.|+|.|.+|+||||+++.|...+... +.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~ 61 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIG 61 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEE
Confidence 45689999999999999999999987544 4443
No 256
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.03 E-value=0.0028 Score=57.05 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|.+|+|.|+.||||||+++.|...+..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 46889999999999999999999987764
No 257
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.02 E-value=0.0051 Score=52.26 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.-|.|.|++|+|||++++.+++.+...+.+++.++
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 455788999999999999999998765556666554
No 258
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.004 Score=56.28 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||.||||||+.+.|+-.+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35889999999999999999999987654
No 259
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.02 E-value=0.0092 Score=52.53 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=33.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|-+++|.|.+|+||||++..++...-..|.++.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 357899999999999999999999988766676776654
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.01 E-value=0.0042 Score=52.74 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+ -+++|.|+.||||||+.+.|+-.+.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46 7999999999999999999987654
No 261
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.99 E-value=0.004 Score=56.13 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35789999999999999999999987553
No 262
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.99 E-value=0.009 Score=51.95 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=33.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++++|+|.|-.|+||||++..|+..|...|++|..++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46788888899999999999999999998999987665
No 263
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.98 E-value=0.0029 Score=51.45 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..|.=|.|.|++|+||||++-.|.+
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4677899999999999999999877
No 264
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.98 E-value=0.0042 Score=56.34 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||.||||||+.+.|+-.+.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35889999999999999999999987553
No 265
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.98 E-value=0.0053 Score=52.39 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+.-+.|.|++|+||||+++.+++.++ .+++.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN---FPFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT---CSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC---CCEEEEe
Confidence 4566789999999999999999999864 4444444
No 266
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.98 E-value=0.0026 Score=56.16 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|...+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 46899999999999999999999977664
No 267
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.97 E-value=0.0097 Score=50.42 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=34.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
..|.+.++.|+.||||||.+-.++.++...|.++..+.+
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 468999999999999999999999999888999887663
No 268
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.95 E-value=0.0045 Score=56.01 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.|+.||||||+.+.|.--+.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 46899999999999999999999976553
No 269
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.91 E-value=0.007 Score=54.06 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELW 89 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~ 89 (259)
.+.-|.|.||+|+||||+|+.|++.++ .+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD---VPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEe
Confidence 455688899999999999999999884 444443
No 270
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.91 E-value=0.0044 Score=51.70 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+...|+|.||+|+||||.|..|++.+.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345699999999999999999999985
No 271
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.91 E-value=0.005 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+.-|.|.|++|+||||+++.+++.++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677899999999999999999984
No 272
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.89 E-value=0.0041 Score=53.62 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
.. |-+++|.|+.||||||+.+.|.-.+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 8899999999999999999997655
No 273
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.88 E-value=0.0058 Score=52.52 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=26.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|.++.|.|++||||||++..++..+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 357899999999999999999999886653
No 274
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.88 E-value=0.0047 Score=55.96 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|-+++|.|++||||||+.+.|+-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4788999999999999999999987654
No 275
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.88 E-value=0.0046 Score=50.38 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+|.|.|+.||||||+|..|+.. |.++.++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yia 30 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIA 30 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence 4789999999999999999865 44565554
No 276
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.86 E-value=0.0055 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.-+.|.||+|+||||+++.+++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 568999999999999999999999964
No 277
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.84 E-value=0.0044 Score=54.69 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
.+-.+++|.|+.||||||+.+.|....
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhc
Confidence 355789999999999999999998754
No 278
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.0052 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
+.|.||+|+||||+++.++..+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 8999999999999999999998654
No 279
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.83 E-value=0.0052 Score=56.03 Aligned_cols=29 Identities=34% Similarity=0.329 Sum_probs=25.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||+||||||+.+.|+-.+.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 45899999999999999999999986543
No 280
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.83 E-value=0.0035 Score=56.35 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||.||||||+.+.|+-.+.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 35789999999999999999999986553
No 281
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.82 E-value=0.0074 Score=46.79 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+.+..-|+|.|.+|+||||+++.|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45667799999999999999999964
No 282
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.80 E-value=0.004 Score=55.87 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+..++|.|++||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 78899999999999999999998875
No 283
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.80 E-value=0.0063 Score=48.49 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+| +.+|.|+.||||||+.+.|.-.+.
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 45 899999999999999999987664
No 284
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.79 E-value=0.0031 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..+|..|+|.|++||||||+.+.|..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999998864
No 285
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.012 Score=48.81 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH-HhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSY-LEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~-l~~~g~~v~~~~ 90 (259)
.+|.++.|.|++|+||||+|-.++.. ....|..+.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 47889999999999999999887654 333455665544
No 286
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.72 E-value=0.0064 Score=53.48 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+.-|.|.|++|+|||++++.++..++
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 345688999999999999999999874
No 287
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.71 E-value=0.0093 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+.-|.|.|++|+||||+++.|++.++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 44588999999999999999999883
No 288
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.71 E-value=0.01 Score=55.83 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
.+..+.|.||+|+||||+++.+++.+ |+.++.++.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 34689999999999999999999988 5666666544
No 289
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.013 Score=54.13 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++=|.+.||||+|||++|+.++..++ .+++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~ 238 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVN 238 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEe
Confidence 34588899999999999999999985 4555444
No 290
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.70 E-value=0.013 Score=52.89 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+|.+|.|.|++|+||||++..++......|..+.++..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 478899999999999999999999887666777776653
No 291
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.70 E-value=0.0065 Score=53.66 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+.-|.|.||+|+|||++++.++..+. +..++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~ 78 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSIS 78 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEE
Confidence 345678889999999999999999873 33444444
No 292
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.69 E-value=0.0067 Score=47.99 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
++..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999753
No 293
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.68 E-value=0.0065 Score=53.23 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..|.+++|.|++|+||||+++.|. .+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999999998 44
No 294
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.67 E-value=0.017 Score=47.32 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhC
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGL 82 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~ 82 (259)
+...|+|.|.+|+||||++..|...+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 45778999999999999999999887543
No 295
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.66 E-value=0.0035 Score=56.44 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|-+++|.||.||||||+.+.|+-.+.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35789999999999999999999987553
No 296
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.66 E-value=0.0065 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
+|.+++|.|++|+||||+++.|...+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999999997543
No 297
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.65 E-value=0.0095 Score=54.97 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=29.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~ 90 (259)
+.-+.|.|++|+||||+++.++..+... +..+..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 5678999999999999999999988654 55665544
No 298
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.64 E-value=0.0074 Score=57.29 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+|..+.|.||+|+||||+++.|+..+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 678999999999999999999999985
No 299
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.64 E-value=0.0036 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~ 81 (259)
|.|.|++|+||||+++.++..+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 678899999999999999998854
No 300
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.63 E-value=0.0081 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
...|+|.|++|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999965
No 301
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.62 E-value=0.0093 Score=49.56 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.|+|.|-.|+||||++..|+..|...|++|..++
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4777999999999999999999998899987665
No 302
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.014 Score=53.89 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=26.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++=|.+.||||+|||++|+.++..++ .+++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~ 247 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSP 247 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEe
Confidence 345677889999999999999999985 4555444
No 303
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.60 E-value=0.0099 Score=47.08 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+...|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 557799999999999999999975
No 304
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.0077 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=21.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~ 80 (259)
+.|.|++|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999875
No 305
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.015 Score=53.79 Aligned_cols=34 Identities=12% Similarity=-0.034 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++=|.+.||||+|||++|+.++..++ .++..+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~---~~f~~v~ 247 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN---ATFLKLA 247 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC---CCEEEEe
Confidence 345688899999999999999999985 4455444
No 306
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.006 Score=56.81 Aligned_cols=29 Identities=38% Similarity=0.426 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|...+.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 45899999999999999999999988664
No 307
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.57 E-value=0.008 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.185 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
...|+|.|++||||||+++.|....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999997643
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.57 E-value=0.01 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+...|+|.|.+|+||||+++.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677899999999999999999864
No 309
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.56 E-value=0.018 Score=51.53 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=33.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|-+|+|.|.+|+||||++..++......|.+|.++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 458899999999999999999999998876788877655
No 310
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.56 E-value=0.016 Score=53.58 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~ 90 (259)
..+|-+++|.|++|+||||++..++..+.. .|.+|.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 357899999999999999999999998764 577777655
No 311
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.55 E-value=0.0091 Score=47.66 Aligned_cols=25 Identities=36% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3456799999999999999999876
No 312
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.53 E-value=0.0081 Score=51.86 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.++|.|+.||||||+.+.|...+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999998764
No 313
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.49 E-value=0.016 Score=53.58 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCC-eEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~-~v~~~~ 90 (259)
.++|.|++|+||||++..+...+...|. .+..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 8999999999999999999999988776 444443
No 314
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.47 E-value=0.021 Score=49.86 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++++|+|.|+ .|+||||++..|+..+...|.+|..++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 45688999987 699999999999999988899988765
No 315
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.47 E-value=0.0094 Score=56.58 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+.+.|.-.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5689999999999999999999997644
No 316
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.44 E-value=0.0086 Score=53.61 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|.++.|.|++||||||++..|+-.+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999999998876
No 317
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.44 E-value=0.01 Score=47.94 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
...|+|.|++|+||||+++.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 318
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.44 E-value=0.02 Score=47.58 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=31.2
Q ss_pred CccEEEEEcC-CCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 024986 54 RGALVVLEGL-DRCGKTSQCSRLLSYLEGL-GHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~-dGSGKSTla~~L~~~l~~~-g~~v~~~~ 90 (259)
++++|+|.+. .|+||||++..|+..|... |++|..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 5677777755 6899999999999999888 99987765
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.42 E-value=0.0059 Score=54.31 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|.+++|.|+.||||||+.+.|...+..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 35789999999999999999999887754
No 320
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.41 E-value=0.019 Score=48.56 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++|+|.|-.|+||||++..|+..|...|++|..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 46777899999999999999999998899987654
No 321
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.41 E-value=0.0088 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
..|.+++|.|++||||||+.+.|...
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccc
Confidence 35789999999999999999999653
No 322
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.39 E-value=0.016 Score=51.14 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC------CCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL------GHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~------g~~v~~~~ 90 (259)
.+|.++.|.|++|+||||++..++...... +..+.++.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 478899999999999999999998765322 45666554
No 323
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.37 E-value=0.023 Score=48.85 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=33.2
Q ss_pred CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.++++|+|.|+ .|+||||++..|+..+...|.+|..++.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~ 119 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 35678989876 7999999999999999988999887653
No 324
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.36 E-value=0.0097 Score=53.25 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.-|.|.|++|+|||++|+.++..++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4477789999999999999999984
No 325
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.35 E-value=0.011 Score=45.25 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+-|++.|.+|+||||+++.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999753
No 326
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.35 E-value=0.011 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~ 80 (259)
+.|.|++|+||||+++.|+..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999763
No 327
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.35 E-value=0.02 Score=47.03 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=29.8
Q ss_pred cEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.|+|.|. .|+||||++..|+..|...|++|..++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 45777776 699999999999999999999987654
No 328
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.34 E-value=0.01 Score=45.70 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999763
No 329
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.32 E-value=0.013 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
-+.|.|++|+||||+++.+++.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4899999999999999999999854
No 330
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.32 E-value=0.013 Score=47.01 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 446699999999999999999875
No 331
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.31 E-value=0.035 Score=51.34 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|-+|+|.|.||+||||++-.++...-..|.+|.++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 357899999999999999999999998866688877654
No 332
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.30 E-value=0.013 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999875
No 333
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.013 Score=46.63 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|++|+||||+++.|..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999865
No 334
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.30 E-value=0.011 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~ 78 (259)
.-|++.|.+|+||||+++.|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 335
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.30 E-value=0.026 Score=46.47 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..|.+.++.|+.||||||..-.....+...|..+..+.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 46899999999999999666666666666788887664
No 336
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.29 E-value=0.021 Score=53.75 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+|-++.|.|++||||||++..++..+...|..++.+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 357889999999999999999999988876676665443
No 337
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.27 E-value=0.011 Score=54.59 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+.-|.|.||+|+|||++|+.+++.++.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 3445888999999999999999999863
No 338
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.26 E-value=0.012 Score=45.28 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999875
No 339
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.25 E-value=0.023 Score=48.85 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++|+|.|-.|+||||++..|+..|...|++|..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46778899999999999999999998899987654
No 340
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.24 E-value=0.025 Score=49.91 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=34.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
...++|+|.|=-|+||||++-.|+..|...|++|..++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45689999999999999999999999999999997665
No 341
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.23 E-value=0.0093 Score=55.29 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.-|.+.||+|+||||+++.|++.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344889999999999999999998853
No 342
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.21 E-value=0.021 Score=50.82 Aligned_cols=39 Identities=21% Similarity=0.037 Sum_probs=30.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh------CCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG------LGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~------~g~~v~~~~ 90 (259)
..+|.++.|.|++|+||||++..++..... .+..+.++.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 357899999999999999999999886321 355666554
No 343
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.20 E-value=0.0041 Score=54.90 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|.+++|.|++|+||||+++.|...+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 3578999999999999999999996544
No 344
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.012 Score=52.63 Aligned_cols=34 Identities=21% Similarity=0.036 Sum_probs=26.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+.-|.|.|++|+||||+++.++..+ +..++.+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~ 149 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSIS 149 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEe
Confidence 45668899999999999999999887 44555444
No 345
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.19 E-value=0.013 Score=46.69 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999999975
No 346
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.0099 Score=54.43 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++=|.+.||||+|||++|+.++..++ .++..+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~---~~f~~v~ 214 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD---CKFIRVS 214 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC---CCceEEE
Confidence 34577899999999999999999985 4455444
No 347
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.18 E-value=0.016 Score=45.20 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999764
No 348
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.18 E-value=0.011 Score=51.76 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
..-|.|.|++|+||||+++.+++.++ ..++.+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~---~~~~~~~~ 88 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS---ANIKTTAA 88 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEecc
Confidence 34588999999999999999988874 34444443
No 349
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.17 E-value=0.014 Score=51.69 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+..+.|.|++|+||||+++.+++.+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999998864
No 350
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.17 E-value=0.014 Score=52.23 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=28.2
Q ss_pred CccEEEE--EcCCCCCHHHHHHHHHHHHhhC------CCeEEEEe
Q 024986 54 RGALVVL--EGLDRCGKTSQCSRLLSYLEGL------GHSVELWR 90 (259)
Q Consensus 54 ~g~lIvi--eG~dGSGKSTla~~L~~~l~~~------g~~v~~~~ 90 (259)
.+..++| .|++|+||||+++.+.+.+... ++.+..+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 4556777 9999999999999999988653 44555554
No 351
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.021 Score=53.10 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++=|.+.||||+|||++|+.++..++ .+++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~---~~fi~vs 275 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD---ATFIRVI 275 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC---CCeEEEE
Confidence 455688899999999999999999985 3444444
No 352
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.16 E-value=0.011 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCccE--EEEEcCCCCCHHHHHHHHHHH
Q 024986 52 DSRGAL--VVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 52 ~~~g~l--IvieG~dGSGKSTla~~L~~~ 78 (259)
..+|-+ |+|.|++||||||+++.|...
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 467888 999999999999999999753
No 353
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.16 E-value=0.032 Score=49.17 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++++.|-.|+||||++..|+..+...|.+|..++
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 67888899999999999999999998899987655
No 354
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.014 Score=45.11 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999875
No 355
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.14 E-value=0.011 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~ 77 (259)
.-|+|.|.+|+||||+++.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999975
No 356
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.12 E-value=0.019 Score=45.46 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4466999999999999999999764
No 357
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.12 E-value=0.015 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.|.|++|+||||+++.+++.+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECcCCcCHHHHHHHHHHHhcC
Confidence 899999999999999999999854
No 358
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.12 E-value=0.012 Score=56.30 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|...+.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36889999999999999999999988775
No 359
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.12 E-value=0.013 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~ 77 (259)
.-|+|.|.+|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999875
No 360
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.09 E-value=0.012 Score=56.27 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|..++|.|+.||||||+++.|...++
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 36889999999999999999999987664
No 361
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.09 E-value=0.01 Score=56.05 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+|..|+|.|+.||||||+.+.|...+..
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 35778999999999999999999887753
No 362
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.08 E-value=0.013 Score=53.91 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
++.+|+|.|++||||||+.+.|.-.+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34499999999999999999998744
No 363
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.08 E-value=0.012 Score=45.42 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLL 76 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~ 76 (259)
.-|+|.|.+|+||||+++.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999999885
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.08 E-value=0.014 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35699999999999999999964
No 365
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.07 E-value=0.014 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999875
No 366
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.05 E-value=0.013 Score=45.50 Aligned_cols=23 Identities=39% Similarity=0.215 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35699999999999999999864
No 367
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.03 E-value=0.014 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~ 77 (259)
.-|+|.|.+|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999974
No 368
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.03 E-value=0.03 Score=51.62 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=32.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh-CCCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG-LGHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~-~g~~v~~~~ 90 (259)
..+|-+++|.|++|+||||++..++..... .|.+|.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457899999999999999999999988764 477777654
No 369
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.01 E-value=0.014 Score=45.16 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLL 76 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~ 76 (259)
-|+|.|.+|+||||+++.|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 370
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.00 E-value=0.038 Score=48.00 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=32.6
Q ss_pred CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.++++|+|.|+ .|+||||++..|+..+...|.+|..++.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~ 129 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDC 129 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Confidence 45678877765 7999999999999999988999887653
No 371
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.00 E-value=0.033 Score=46.00 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=30.2
Q ss_pred ccEEEEEc-CCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 55 GALVVLEG-LDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 55 g~lIvieG-~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
+++|+|.| -.|+||||++..|+..|...|++|..++.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 45677764 56899999999999999988999877653
No 372
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.99 E-value=0.015 Score=44.85 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456999999999999999999753
No 373
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.99 E-value=0.02 Score=45.32 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
...-|+|.|.+|+||||+++.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998653
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.98 E-value=0.018 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
+..-|+|.|++|+||||+++.|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999997643
No 375
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.97 E-value=0.015 Score=44.90 Aligned_cols=24 Identities=38% Similarity=0.253 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 345699999999999999999875
No 376
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.96 E-value=0.016 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3456799999999999999998875
No 377
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.96 E-value=0.019 Score=44.11 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 34589999999999999999975
No 378
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.96 E-value=0.015 Score=55.20 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+++.|.-.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999997654
No 379
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.94 E-value=0.02 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999974
No 380
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.93 E-value=0.018 Score=46.02 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.|..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 3456799999999999999998875
No 381
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.91 E-value=0.016 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+|.++.|.|++|+||||++..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5677899999999999999999887
No 382
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.91 E-value=0.017 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999975
No 383
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.90 E-value=0.015 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
.+|.++.|.|++||||||++..|+-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 47899999999999999999987643
No 384
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=94.90 E-value=0.036 Score=47.10 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCccEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+++.|.|.|. .|+|||+++..|.+.|..+|++|..+.
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 45678888888 899999999999999999999988764
No 385
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.86 E-value=0.03 Score=50.47 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.-++|.|++||||||+++.|...+...|..+..++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 445788899999999999999988877777776654
No 386
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.86 E-value=0.012 Score=51.11 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=26.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEecC
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFP 92 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~p 92 (259)
+.-+.|.|++|+||||+++.+++.++ .++..+..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~---~~~~~~~~~ 72 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGP 72 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT---CCEEEECTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC---CCEEEEecc
Confidence 35678899999999999999999884 344444433
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.86 E-value=0.017 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 346699999999999999999975
No 388
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.86 E-value=0.034 Score=44.79 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=30.0
Q ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 56 ALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 56 ~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
++|+|. +-.|+||||++..|+..|...|.+|..++.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 456666 557799999999999999989999887763
No 389
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.85 E-value=0.018 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4467999999999999999999753
No 390
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.015 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 446699999999999999999854
No 391
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.018 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.|.|++|+||||+++.+++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999854
No 392
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.83 E-value=0.018 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999975
No 393
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.82 E-value=0.014 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.-+.|.|++|+||||+++.|++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4589999999999999999999874
No 394
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.81 E-value=0.02 Score=44.07 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~ 77 (259)
-|+|.|.+|+||||+++.|..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 388999999999999999965
No 395
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.80 E-value=0.0089 Score=52.43 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
+.-+.|.|++|+|||++++.+++.++.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345888999999999999999998753
No 396
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.80 E-value=0.019 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999965
No 397
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.79 E-value=0.013 Score=56.24 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|...++
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 36889999999999999999999987664
No 398
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.78 E-value=0.0086 Score=46.23 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l 79 (259)
.-|.|.|++|+|||++|+.+....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 347789999999999999987654
No 399
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.77 E-value=0.032 Score=53.65 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhh----CCCeEEEE
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEG----LGHSVELW 89 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~----~g~~v~~~ 89 (259)
.+.+++|.|++|+||||++..+...+.. .+..+...
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 4689999999999999999999888863 35555543
No 400
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.77 E-value=0.014 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLL 76 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~ 76 (259)
.+..-|+|.|.+|+||||+++.|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356779999999999999998885
No 401
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.76 E-value=0.044 Score=46.43 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=31.0
Q ss_pred CccEEEEEc-CCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 54 RGALVVLEG-LDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG-~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+++|+|.+ -.|+||||++..|+..|...|++|..++.
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~ 55 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456777764 55799999999999999988999887653
No 402
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.019 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.|..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc
Confidence 4456799999999999999999975
No 403
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.75 E-value=0.021 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4466899999999999999999763
No 404
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.75 E-value=0.012 Score=58.75 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCS 73 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~ 73 (259)
-+++++++|+|++||||||++-
T Consensus 33 iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHH
Confidence 3689999999999999999983
No 405
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.75 E-value=0.018 Score=50.37 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.+.-|.|.|++|+|||++|+.+.......+.+++.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 3455788999999999999999987755555554444
No 406
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.74 E-value=0.019 Score=44.62 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3466999999999999999999753
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.73 E-value=0.018 Score=44.83 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35689999999999999999974
No 408
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.019 Score=53.00 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++=|.+.||||+|||++|+.++..++. ++..+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~ 248 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIV 248 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCC---CEEEEE
Confidence 456888999999999999999999853 444443
No 409
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.71 E-value=0.018 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.++..|+|.|.+|+||||+.+.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 4566899999999999999999975
No 410
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.71 E-value=0.021 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455789999999999999999975
No 411
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.70 E-value=0.02 Score=44.91 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 345699999999999999999875
No 412
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.70 E-value=0.017 Score=45.53 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 024986 57 LVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~ 77 (259)
-|+|.|.+|+||||+++.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999865
No 413
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.69 E-value=0.014 Score=55.91 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|...+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 46899999999999999999999977664
No 414
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.69 E-value=0.02 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 456799999999999999999875
No 415
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.69 E-value=0.03 Score=48.26 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=31.4
Q ss_pred CccEEEEEc---CCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEG---LDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG---~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++++|+|.+ -.|+||||++..|+..|...|++|..++
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 456777776 7899999999999999988899987654
No 416
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.68 E-value=0.045 Score=48.40 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=31.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..++++.|-.|+||||++..|+..+...|++|..++
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 467888899999999999999999999999987654
No 417
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.68 E-value=0.022 Score=45.14 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999864
No 418
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.67 E-value=0.022 Score=45.86 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
.+..-|+|.|.+|+||||+++.|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34567999999999999999999763
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.66 E-value=0.022 Score=44.49 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+.+.+|.|+.||||||+.+.|.=.|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34789999999999999999976663
No 420
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.64 E-value=0.046 Score=48.77 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=32.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
...++++.|-.|+||||++..|+..+...|.+|..++
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3467788899999999999999999998999987765
No 421
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.64 E-value=0.02 Score=45.03 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 446699999999999999999875
No 422
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=94.64 E-value=0.053 Score=46.28 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=32.0
Q ss_pred ccEEEEEcCC-CCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLD-RCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~d-GSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
-+.|.|.|.+ |+||||++..|.+.|..+|++|..+.
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3578899987 99999999999999999999987765
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.61 E-value=0.022 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 446699999999999999999865
No 424
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.61 E-value=0.019 Score=52.93 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.-|.|.||+|+|||++++.++..+. +..++.+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~ 200 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSIS 200 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEe
Confidence 45688899999999999999999873 33444443
No 425
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.61 E-value=0.022 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999864
No 426
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.59 E-value=0.0098 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~ 80 (259)
|.|.|++|+|||++++.+++.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999875
No 427
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.59 E-value=0.021 Score=49.78 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=27.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.+.++.+.|++|+||||+++.+++.++ ..+..++.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~---~~~~~i~~ 81 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN---ADMMFVNG 81 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT---EEEEEEET
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC---CCEEEEcc
Confidence 456788899999999999999998883 45555553
No 428
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.58 E-value=0.012 Score=56.23 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=25.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+.+.|...+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 36899999999999999999999877664
No 429
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.57 E-value=0.039 Score=46.67 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 53 SRGALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
.++++|+|. |-.|+||||++..|+..|. .|++|..++.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~ 63 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDM 63 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEEC
Confidence 456777775 6678999999999999999 8999877653
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.56 E-value=0.017 Score=54.79 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|-+++|.|+.||||||+++.|.-.+.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999987654
No 431
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.56 E-value=0.024 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~ 80 (259)
|.|.||+|+||||+++.|+..+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998774
No 432
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.55 E-value=0.048 Score=48.51 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+++++.|-.|+||||++..|+..+...|.+|..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3478899999999999999999999998899987665
No 433
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.55 E-value=0.023 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
-.-|+|.|++|+||||+.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999653
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.55 E-value=0.024 Score=50.73 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=26.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
..+|-.+.|.|+.||||||+.+.|...+..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 357899999999999999999999988753
No 435
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.54 E-value=0.033 Score=44.33 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3456699999999999999999875
No 436
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.026 Score=44.73 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999874
No 437
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.52 E-value=0.052 Score=50.65 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=33.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHhhC-CCeEEEEe
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLEGL-GHSVELWR 90 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~~~-g~~v~~~~ 90 (259)
..+|.+++|.|++|+||||++-.++...-.. |.+|.++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 4578999999999999999999999988655 77777655
No 438
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.52 E-value=0.041 Score=53.10 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
..+-+|-||||+||||++..+..++-..|..+..+.+
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 3578899999999999888888877777877765543
No 439
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.51 E-value=0.021 Score=45.16 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 4567799999999999999999864
No 440
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.50 E-value=0.049 Score=48.39 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHhhC--CCeEEEEec
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGL--GHSVELWRF 91 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~~~--g~~v~~~~~ 91 (259)
.+| ++.|.|++|+||||++-.+....... |-.+.++..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 468 89999999999999998887776543 556666553
No 441
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.50 E-value=0.023 Score=51.21 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+.-|.|.|++|+|||++++.++..++ ..++.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~---~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN---ATFFNIS 180 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT---CEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc---CcEEEee
Confidence 46789999999999999999988864 4555443
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.50 E-value=0.021 Score=54.08 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|-+++|.|+.||||||+++.|.-.+.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999987654
No 443
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.48 E-value=0.025 Score=44.25 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 445699999999999999999875
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.48 E-value=0.025 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 446699999999999999999875
No 445
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.47 E-value=0.021 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999974
No 446
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.47 E-value=0.025 Score=45.69 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 456799999999999999999864
No 447
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.46 E-value=0.029 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 024986 58 VVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 58 IvieG~dGSGKSTla~~L~~~l~ 80 (259)
|.|.||+|+||||+++.++..++
T Consensus 52 vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999874
No 448
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.46 E-value=0.033 Score=43.77 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999753
No 449
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.44 E-value=0.048 Score=51.94 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=33.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
..+++++.|..|+||||++..|+..+...|.+|..+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4678999999999999999999999998999987654
No 450
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.43 E-value=0.025 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 45699999999999999999975
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.43 E-value=0.022 Score=54.79 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4788999999999999999999987654
No 452
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.43 E-value=0.03 Score=43.81 Aligned_cols=24 Identities=29% Similarity=0.101 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 456699999999999999998864
No 453
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.42 E-value=0.032 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999988865
No 454
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.41 E-value=0.02 Score=55.12 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
..+|-+++|.|+.||||||+.+.|.-.+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4689999999999999999999997654
No 455
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.41 E-value=0.016 Score=55.49 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..+|.+++|.|+.||||||+++.|...++
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 36789999999999999999999977664
No 456
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.026 Score=44.93 Aligned_cols=26 Identities=23% Similarity=0.071 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
+-.-|+|.|.+|+||||+++.|...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34569999999999999999997643
No 457
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.40 E-value=0.03 Score=52.68 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHH--HHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSR--LLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~--L~~~l~ 80 (259)
.+|-+++|.|++||||||+++. +.-.+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999 444444
No 458
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.37 E-value=0.032 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.-++|.|++|+||||+++.|+..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999854
No 459
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.36 E-value=0.029 Score=45.01 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999653
No 460
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.36 E-value=0.05 Score=45.51 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.9
Q ss_pred ccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+++|+|. +-.|+||||++..|+..|...|++|..++
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567775 45679999999999999998999987765
No 461
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.36 E-value=0.038 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999875
No 462
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.34 E-value=0.032 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 346699999999999999999975
No 463
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.33 E-value=0.024 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344589999999999999999853
No 464
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.32 E-value=0.027 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999875
No 465
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.32 E-value=0.041 Score=54.05 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 57 lIvieG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
-+.|.||+|+|||++|+.|++.+...+.+++.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 5889999999999999999999966566666554
No 466
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.31 E-value=0.029 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLL 76 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~ 76 (259)
.+..-|+|.|.+|+||||+++.|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999885
No 467
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.31 E-value=0.017 Score=58.46 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.2
Q ss_pred CCCccEEEEEcCCCCCHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQC 72 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla 72 (259)
-++++++||+|++||||||+|
T Consensus 43 iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 43 LPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EESSSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEECCCCCcHHHHH
Confidence 357899999999999999997
No 468
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.31 E-value=0.028 Score=51.91 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=27.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 51 IDSRGALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 51 ~~~~g~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
...+|-++.|.|+.||||||+.+.|+..+..
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3468899999999999999999999988753
No 469
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.31 E-value=0.028 Score=51.22 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=23.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..+|..|+|.|++|+||||+.+.|..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 35688999999999999999999987
No 470
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.29 E-value=0.035 Score=46.88 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=31.6
Q ss_pred CccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 54 RGALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 54 ~g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
++++|+|. +-.|+||||++..|+..|...|++|..++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 56788887 45689999999999999988899988765
No 471
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.29 E-value=0.03 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYL 79 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l 79 (259)
|.+++|.|+.|+||||+++.+.+.+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 4799999999999999999998875
No 472
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.28 E-value=0.027 Score=44.02 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 445699999999999999999876
No 473
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=94.28 E-value=0.06 Score=45.12 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=31.0
Q ss_pred cEEEEEcC-CCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 56 ALVVLEGL-DRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 56 ~lIvieG~-dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+-|.|.|. +|+||||++..|...|..+|++|..+.
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 56888898 799999999999999999999987654
No 474
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.032 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346699999999999999999976
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.028 Score=44.48 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4467999999999999999999753
No 476
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.24 E-value=0.018 Score=58.14 Aligned_cols=21 Identities=52% Similarity=0.711 Sum_probs=19.2
Q ss_pred CCCccEEEEEcCCCCCHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQC 72 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla 72 (259)
-++++++||+|++||||||+|
T Consensus 41 iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH
Confidence 367899999999999999997
No 477
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.23 E-value=0.052 Score=48.72 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCccEEEEEc-CCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 53 SRGALVVLEG-LDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 53 ~~g~lIvieG-~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
.++++|+|.| -.|+||||++..|+..|...|.+|..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4678888875 8899999999999999988899988766
No 478
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.22 E-value=0.032 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHhh
Q 024986 56 ALVVLEGLDRCGKTSQCSRLLSYLEG 81 (259)
Q Consensus 56 ~lIvieG~dGSGKSTla~~L~~~l~~ 81 (259)
.+++|.|+.|+||||+++.+.+.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 59999999999999999999988753
No 479
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.20 E-value=0.027 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.184 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999999865
No 480
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.20 E-value=0.032 Score=45.24 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999763
No 481
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.19 E-value=0.033 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 446799999999999999999865
No 482
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.18 E-value=0.029 Score=49.14 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
.+|.++.|.|++|+||||++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999875
No 483
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.18 E-value=0.033 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999964
No 484
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.18 E-value=0.042 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.| +.+|.|+.||||||+.+.|.=.+-
T Consensus 23 ~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 23 SG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 56 788999999999999999986553
No 485
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.17 E-value=0.056 Score=46.51 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.8
Q ss_pred ccEEEEE-cCCCCCHHHHHHHHHHHHhhCCCeEEEEec
Q 024986 55 GALVVLE-GLDRCGKTSQCSRLLSYLEGLGHSVELWRF 91 (259)
Q Consensus 55 g~lIvie-G~dGSGKSTla~~L~~~l~~~g~~v~~~~~ 91 (259)
+++|+|. +-.|+||||++..|+..|...|++|..++.
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 41 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDL 41 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4577776 456899999999999999989999887663
No 486
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.17 E-value=0.039 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
...-|+|.|.+|+||||+++.|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999875
No 487
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.16 E-value=0.016 Score=58.30 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.5
Q ss_pred CCCccEEEEEcCCCCCHHHHH
Q 024986 52 DSRGALVVLEGLDRCGKTSQC 72 (259)
Q Consensus 52 ~~~g~lIvieG~dGSGKSTla 72 (259)
-++++++||+|++||||||+|
T Consensus 21 ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 21 IPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EETTSEEEEEESTTSSSHHHH
T ss_pred cCCCcEEEEECCCCCcHHHHH
Confidence 468999999999999999998
No 488
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.16 E-value=0.03 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999999865
No 489
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.14 E-value=0.034 Score=44.80 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
.+..-|+|.|.+|+||||+++.|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999874
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.03 Score=53.95 Aligned_cols=27 Identities=26% Similarity=0.355 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
+|-+++|.|+.||||||+.+.|.-.+.
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC
Confidence 447899999999999999999987664
No 491
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.12 E-value=0.031 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+...|+|.|.+|+||||+++.|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999964
No 492
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.11 E-value=0.023 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLL 76 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~ 76 (259)
..-|+|.|.+|+||||+++.|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999984
No 493
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.11 E-value=0.032 Score=44.11 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
..-|+|.|.+|+||||+++.|...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45699999999999999988876554
No 494
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.08 E-value=0.028 Score=52.57 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHh
Q 024986 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE 80 (259)
Q Consensus 53 ~~g~lIvieG~dGSGKSTla~~L~~~l~ 80 (259)
.+ -+++|.|+.||||||+.+.|.-.+.
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 35 7999999999999999999988774
No 495
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.05 E-value=0.073 Score=44.76 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=29.6
Q ss_pred ccEEEE-EcCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Q 024986 55 GALVVL-EGLDRCGKTSQCSRLLSYLEGLGHSVELWR 90 (259)
Q Consensus 55 g~lIvi-eG~dGSGKSTla~~L~~~l~~~g~~v~~~~ 90 (259)
+++|+| .+-.|+||||++..|+..|...|.+|..++
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345666 466789999999999999988899987765
No 496
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.05 E-value=0.029 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Q 024986 55 GALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 55 g~lIvieG~dGSGKSTla~~L~~ 77 (259)
..-|+|.|.+|+||||+++.|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999999964
No 497
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.032 Score=45.35 Aligned_cols=25 Identities=28% Similarity=0.139 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999998753
No 498
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.04 E-value=0.03 Score=45.12 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999864
No 499
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.032 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLS 77 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~ 77 (259)
+..-|+|.|.+|+||||+++.|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 345699999999999999999875
No 500
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.02 E-value=0.032 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 024986 54 RGALVVLEGLDRCGKTSQCSRLLSY 78 (259)
Q Consensus 54 ~g~lIvieG~dGSGKSTla~~L~~~ 78 (259)
+..-|+|.|.+|+||||+++.|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999763
Done!