RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024986
(259 letters)
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 257 bits (660), Expect = 2e-87
Identities = 94/209 (44%), Positives = 142/209 (67%), Gaps = 5/209 (2%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
RGAL+VLEG+DR GK++Q +L+ L GH EL RFP+R+T +G+++S+YL +S +
Sbjct: 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWCKAPEIG 171
+DH++HLLFSANRWE+ +++ KL G TL+VDRY++SGVAF+ AK ++WCK P++G
Sbjct: 67 EDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVG 126
Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSS---WKIIDACQS 228
L PD VL+L + AA+RG +G ERYE+ FQ + +C+ L + WK++DA +S
Sbjct: 127 LPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKS 186
Query: 229 IEDVEKQLKEIVLDQVTACKKGKPFSLLW 257
IE V + ++ + D + + KP LW
Sbjct: 187 IEAVHEDIRVLSEDAIATATE-KPLGELW 214
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 252 bits (645), Expect = 3e-85
Identities = 83/214 (38%), Positives = 126/214 (58%), Gaps = 5/214 (2%)
Query: 47 RIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL 106
+ + +G +V EGLDR GK++Q L+ YL+ V+ FP+R T +GQ+IS YL
Sbjct: 2 HMTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYL 61
Query: 107 SNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK-GIDIEWC 165
++ + + TIHLLFSANRWE + +++ L G ++ DRY+YSGVA+SS ++ WC
Sbjct: 62 KMENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWC 121
Query: 166 KAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML-RDSSWKIID 224
P+ GL+ PD V YL++PP A R YG E YE +E Q+K+ + Y+ + W ID
Sbjct: 122 MNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYETYKHFAHEDYWINID 181
Query: 225 ACQSIEDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
A + IED+ + + V + + F+ LWS
Sbjct: 182 ATRKIEDIHNDIVKEVTK---IKVEPEEFNFLWS 212
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 235 bits (602), Expect = 9e-79
Identities = 79/208 (37%), Positives = 123/208 (59%), Gaps = 9/208 (4%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
SRGAL+V EGLD+ GKT+QC ++ + ++ FP R+T G+MI YL+ +
Sbjct: 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANT--IKYLNFPQRSTVTGKMIDDYLTRKKTY 59
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGL 172
+DH ++LLF ANRWE S ++ +L+ G TLIVDRY++SGVA+++AKG + K+ E GL
Sbjct: 60 NDHIVNLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGL 119
Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML---RDSSWKIIDACQSI 229
PD V++L+ ++ G E YE + FQ+KV Q Y+ + D W+II +
Sbjct: 120 PKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYKKMIEEGDIHWQIISSEFEE 177
Query: 230 EDVEKQLKEIVLDQVTACKKGKPFSLLW 257
+ ++ +K IV++ + P LW
Sbjct: 178 DVKKELIKNIVIEAIHTVT--GPVGQLW 203
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 224 bits (572), Expect = 4e-74
Identities = 88/217 (40%), Positives = 127/217 (58%), Gaps = 16/217 (7%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH- 111
RG L+++EGLDR GKT+QC+ L L+ L +FP+R+T +G +I+ YL++ S
Sbjct: 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDDSFQ 59
Query: 112 LDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGI---DIEWCKAP 168
L D IHLLFSANRWE ++ L G +++DRY YSGVA+S+AKG D++WC P
Sbjct: 60 LSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQP 119
Query: 169 EIGLLAPDSVLYLDIPPEK-AAERGGYGGERYEHLEFQRKVAQCYQML-------RDSSW 220
++GLL PD L+L AE+ G+G ERYE ++FQ KV Q + L D S
Sbjct: 120 DVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESI 179
Query: 221 KIIDA-CQSIEDVEKQLKEIVLDQVTACKKGKPFSLL 256
I+D + I++VE + +IV ++ FS
Sbjct: 180 TIVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFSFF 216
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 207 bits (530), Expect = 9e-68
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 26/211 (12%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSH----L 112
L+ +EG+D GK + +L G SV FP SV I+A + H
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61
Query: 113 DDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAK------GIDIEWCK 166
+ + LF+ +R ++ + +I+DRY S A+S+A+ G W +
Sbjct: 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121
Query: 167 APE---IGLLAPDSVLYLDIPPEKAAER--------GGYGGERYEH-LEFQRKVAQCYQM 214
E +GL PD + L + E A ER G + YE E Q++ Y
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAE 181
Query: 215 LRDSS----WKIIDACQSIEDVEKQLKEIVL 241
L W ++ A + L +
Sbjct: 182 LAAQGWGGRWLVVGADVDPGRLAATLAPPDV 212
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 160 bits (406), Expect = 4e-49
Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 22/209 (10%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
+G L+ EG+D GK+SQ + L ++E L V L + + + +I L
Sbjct: 2 KKGVLIAFEGIDGSGKSSQATLLKDWIE-LKRDVYLTEWN-SSDWIHDIIKEAKKKDL-L 58
Query: 113 DDHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIG 171
T L+ + + + + LK+G +I DRY Y+ A S +G+DI+W K
Sbjct: 59 TPLTFSLIHATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSF 118
Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGER-----------------YEHLEFQRKVAQCYQM 214
+ PD Y+ + P+ A ER + L++Q + + Y
Sbjct: 119 AIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDK 178
Query: 215 L-RDSSWKIIDACQSIEDVEKQLKEIVLD 242
L +D ++ +ID ++ ++++ Q+++ V +
Sbjct: 179 LVKDENFIVIDGTKTPKEIQIQIRKFVGE 207
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 115 bits (291), Expect = 5e-32
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 21/206 (10%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYL--SNQSH 111
G V LEG + GK++ L L G V+L R P T + + I L +
Sbjct: 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEP 63
Query: 112 LDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCK 166
+ T LL A R + L G ++ DR++ + A+ +G+
Sbjct: 64 MAADTELLLMFAAR---AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIA 120
Query: 167 APE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML--RD 217
A E G L PD L D+P E R G R+E F V Q Y +
Sbjct: 121 ALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQA 180
Query: 218 SS-WKIIDACQSIEDVEKQLKEIVLD 242
++++DA + +V+ L ++ +
Sbjct: 181 PERYQVLDAGLPLAEVQAGLDRLLPN 206
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 114 bits (289), Expect = 1e-31
Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 10/191 (5%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
+ EG+D GK++Q L YLE G V L R P T G+ I L +
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLE-EEVTPKA 59
Query: 117 IHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE---IGL 172
LF A+R + ++ L G +++DRY+ S VA+ + + E +
Sbjct: 60 ELFLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDG 119
Query: 173 LAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML--RDSS-WKIIDACQSI 229
L PD Y+D+ E A +R G R+E EF +V + Y +L ++D +SI
Sbjct: 120 LIPDLTFYIDVDVETALKRKG-ELNRFEKREFLERVREGYLVLAREHPERIVVLDGKRSI 178
Query: 230 EDVEKQLKEIV 240
E++ + + V
Sbjct: 179 EEIHRDVVREV 189
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 113 bits (286), Expect = 3e-31
Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLG-HSVELWRFPDRTTSVGQMISAYLSNQSHL 112
R +V+EGL+ GKT+ + ++ LE LG + R P T + + + + L + +
Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSV 60
Query: 113 DDHTIH-----LLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDI 162
D I L+F A R + ++E L GT +I DR+ S A+ +GID
Sbjct: 61 GDEVITDKAEVLMFYAARVQ---LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQ 117
Query: 163 EWCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML 215
+G PD LYLD+ PE +R GE R E +F + Y L
Sbjct: 118 HMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLEL 177
Query: 216 --RDSSWKIIDACQSIEDVEKQLKEIVLD 242
+D S IDA Q +E V ++ V
Sbjct: 178 AAQDKSIHTIDATQPLEAVMDAIRTTVTH 206
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 112 bits (283), Expect = 6e-31
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 10/191 (5%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
L+ EG+D GKT+Q +L YL+ G+ V L+R P T VG+++ L + LD+ T
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERT 59
Query: 117 IHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE---IG 171
LLF A+R + + LK +I+DR+ S +A+ KG+D+E+ K
Sbjct: 60 ELLLFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATR 119
Query: 172 LLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQML--RDSSWKIIDACQSI 229
+ PD L LDIP + A R R+E+ EF KV + + L + + +IDA
Sbjct: 120 GVKPDITLLLDIPVDIALRRLK-EKNRFENKEFLEKVRKGFLELAKEEENVVVIDASGEE 178
Query: 230 EDVEKQLKEIV 240
E+V K++ +
Sbjct: 179 EEVFKEILRAL 189
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 111 bits (279), Expect = 5e-30
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLE----GLGHSVELWRFPDRTTSVGQMISAYLSN 108
+RG + EG+D GKT+ L+ G V + R P T +G+ + L N
Sbjct: 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLN 81
Query: 109 QSHLDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIE 163
Q +D T LL A R R + L G ++ DR++ + A+ +G+ +
Sbjct: 82 QP-MDLETEALLMFAGR---REHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRD 137
Query: 164 WCKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML- 215
+A E G PD + D+PP+ A+ R G ++E F + Y
Sbjct: 138 KLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRA 197
Query: 216 -RDSS-WKIIDACQSIEDVEKQLKEIV 240
+ I+D+ + I + KQL+ ++
Sbjct: 198 QEAPHRFVIVDSSEPIAQIRKQLEGVL 224
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 111 bits (279), Expect = 6e-30
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 22/207 (10%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLEGLGH-SVELWRFPDRTTSVGQMI-SAYLSNQSH 111
+V+EGL+ GK++ ++ L+ G + R P T + + + +
Sbjct: 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GTLLAEKLRALVKEEHPG 84
Query: 112 --LDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIEW 164
L D T LL A R + ++E L G ++ DR+ S A+ + I
Sbjct: 85 EELQDITELLLVYAARVQ---LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPST 141
Query: 165 CKAPE---IGLLAPDSVLYLDIPPEKAAERGGYGGE--RYEH--LEFQRKVAQCYQML-- 215
++ + +G PD LYLDI P+ ER GE R E + F + + Y L
Sbjct: 142 MQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELAN 201
Query: 216 RDSSWKIIDACQSIEDVEKQLKEIVLD 242
D S +IDA QSIE V ++ + D
Sbjct: 202 SDDSVVMIDAAQSIEQVTADIRRALQD 228
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 110 bits (277), Expect = 1e-29
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 15/203 (7%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
+ A + EG + GKT+ + + L + V + R P G+ I + + +
Sbjct: 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDM 81
Query: 113 DDHTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE- 169
D T +LF+A+R E + LK G ++ DRY S +A+ A+GI +E +A
Sbjct: 82 DIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNE 141
Query: 170 --IGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEFQRKVAQCYQMLRDSS--- 219
I L PD +YL++ E ER R + L+F KV + YQ + +
Sbjct: 142 FAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQR 201
Query: 220 WKIIDACQSIEDVEKQLKEIVLD 242
+K ++A Q +E+V + + ++
Sbjct: 202 FKSVNADQPLENVVEDTYQTIIK 224
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 108 bits (272), Expect = 3e-29
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%)
Query: 55 GALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDD 114
A + EG + GKT+ + + L + V + R P G+ I + + +D
Sbjct: 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDMDI 59
Query: 115 HTIHLLFSANRWE-KRSMMEAKLKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCKAPE--- 169
T +LF+A+R E + LK G ++ DRY S +A+ A+GI +E +A
Sbjct: 60 RTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA 119
Query: 170 IGLLAPDSVLYLDIPPEKAAERGGYGG---ERYE--HLEFQRKVAQCYQMLRDSS---WK 221
I L PD +YL++ E ER R + L+F KV + YQ + + +K
Sbjct: 120 INGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFK 179
Query: 222 IIDACQSIEDVEKQLKEIVLD 242
++A Q +E+V + + ++
Sbjct: 180 SVNADQPLENVVEDTYQTIIK 200
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 98.9 bits (247), Expect = 2e-25
Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 20/201 (9%)
Query: 54 RGALVVLEGLDRCGKTSQCSRLLSYLE--GLGHSVELWRFPDRTTSVGQMISAYLSNQSH 111
+ EG+D GKT+Q L YL ++V L R P T + + + L
Sbjct: 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GTLLNESVRNLLFKAQG 78
Query: 112 LDDHTIHLLFSANRWEKRSMMEAK----LKAGTTLIVDRYSYSGVAF-SSAKGIDIEWCK 166
LD + L F A R E L +I DR+ S +A+ +GID
Sbjct: 79 LDSLSELLFFIAMRRE---HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLID 135
Query: 167 APE--IGLLAPDSVLYLDIPPEKAAERGGYGGERYEH--LEFQRKVAQCYQML--RDSS- 219
+ + PD +D+ ++ R YE +EF +V + + ++
Sbjct: 136 QLNDLVIDVYPDITFIIDVDINESLSRS--CKNGYEFADMEFYYRVRDGFYDIAKKNPHR 193
Query: 220 WKIIDACQSIEDVEKQLKEIV 240
+I D++ +
Sbjct: 194 CHVITDKSETYDIDDINFVHL 214
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 51.6 bits (123), Expect = 3e-08
Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 24/196 (12%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHT 116
+VV+ G+ G T+ + L G + ++ F V + + D
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-----RDQM 59
Query: 117 IHLLFSANR--WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
+ + + A++ + + VD + S + + + L
Sbjct: 60 RKMDPETQKRIQKMAGRKIAEMAKESPVAVD-----THSTVSTPKGYLPGLPSWVLNELN 114
Query: 175 PDSVLYLDIPPEKAAERGGYGGERY----------EHLEFQRKVAQCYQMLRDSSWKIID 224
PD ++ ++ ++ R R +H R A Y +L ++ KI+
Sbjct: 115 PDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQ 174
Query: 225 ACQSIEDVEKQLKEIV 240
+++ ++E+
Sbjct: 175 NRN--GLLDQAVEELT 188
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 47.8 bits (113), Expect = 5e-07
Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 24/198 (12%)
Query: 57 LVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD--- 113
+ ++ G+ GK++ +++ L+ G + ++ + D + +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 114 DHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
+ L A K EA+ L +D A + + I +
Sbjct: 63 EKQKKLQIDA---AKGIAEEARAGGEGYLFID-----THAVIRTPSGYLPGLPSYVITEI 114
Query: 174 APDSVLYLDIPPEKAAERGGYGGERY-----------EHLEFQRKVAQCYQMLRDSSWKI 222
P + L+ P+ R R E + F R A +L S+ K+
Sbjct: 115 NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKV 174
Query: 223 IDACQSIEDVEKQLKEIV 240
I + D EI+
Sbjct: 175 IVNVE--GDPSIAANEII 190
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 38.8 bits (90), Expect = 7e-04
Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 23/201 (11%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYL--EGLGHSVELWRF-------PDRTTSVGQMISAYLSN 108
+ + G GK++ + + L E VE + +T Q+ +
Sbjct: 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARS 62
Query: 109 QSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYS-YSGVAFSSAKGIDIEWCKA 167
+ + + + + + Y+ Y +
Sbjct: 63 KQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENK 122
Query: 168 PEIGLLAPDSVLYLDIPPEKAAER---GGYGGERYEHLEFQRKVAQCY-QMLRDSSWK-- 221
+ D V+YL + + A R G E E+ + + Y + + + +
Sbjct: 123 L-----SFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFP 177
Query: 222 --IIDACQSIEDVEKQLKEIV 240
++DA ++ + + +
Sbjct: 178 FFVVDAELDVKTQIELIMNKL 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 8e-04
Identities = 42/293 (14%), Positives = 81/293 (27%), Gaps = 101/293 (34%)
Query: 39 RMESSSSLRIG-NIDSRGALVVLEGLDRCGKTS-------------------------QC 72
R++ LR V+++G+ GKT C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 73 SR---LLSYLEGLGHSVE---------LWRFPDRTTSVGQMISAYLSNQSH------LDD 114
+ +L L+ L + ++ R S+ + L ++ + L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 115 HTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLA 174
+ +A W K L+ R + V + L
Sbjct: 253 -----VQNAKAWNA---FNLSCK---ILLTTR--FKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 175 PDSVLYL----------DIPPEK-----------AAE-RGGYGG-ERYEHL---EFQRKV 208
PD V L D+P E A R G + ++H+ + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 209 AQCYQMLRDSSWK-IIDACQSI--EDVEKQLKEIVLDQVTACKKGKPFSLLWS 258
+L + ++ + D S+ + I+L SL+W
Sbjct: 360 ESSLNVLEPAEYRKMFDRL-SVFPPSA--HIPTILL------------SLIWF 397
Score = 36.4 bits (83), Expect = 0.009
Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 98/284 (34%)
Query: 3 HACSFTLSKALNFGALFVRRSKFHLNCLPKCSCTPFRMESSSSLRIGNIDSRGALVVLEG 62
H+ + T + +L K+ L+C + P + +++ R+ I + +G
Sbjct: 294 HSMTLTPDEVK---SLL---LKY-LDC--RPQDLPREVLTTNPRRLSII---AESIR-DG 340
Query: 63 LDRCG--KTSQCSRLLSYLEGLGHSVE-----LWR--------FPDRTTSVGQMISAYLS 107
L K C +L + +E S+ +R FP ++S
Sbjct: 341 LATWDNWKHVNCDKLTTIIES---SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 108 NQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGT------------------TL---IVDR 146
+ D + N+ K S++E + K T L IVD
Sbjct: 398 DVIKSDVMVV-----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 147 YSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERYEHLEFQR 206
Y+ K D + P + D Y I G+ HL+
Sbjct: 453 YNI-------PKTFDSDDLIPPYL-----DQYFYSHI---------GH------HLKNIE 485
Query: 207 KVAQCYQMLR----DSSW---KII------DACQSIEDVEKQLK 237
+ + R D + KI +A SI + +QLK
Sbjct: 486 H-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Score = 32.1 bits (72), Expect = 0.20
Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 35/138 (25%)
Query: 60 LEGLDRCGKTSQCSRL---LSYLEG-LGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDH 115
L+ ++ + + + +LE + H W + Q + Y + ++ D+
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY---KPYICDN 537
Query: 116 TIHLLFSANRWEKR--SMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLL 173
++E+ ++++ K LI +Y+ D+ I L+
Sbjct: 538 D-------PKYERLVNAILDFLPKIEENLICSKYT------------DL-----LRIALM 573
Query: 174 APDSVLYLDIPPEKAAER 191
A D ++ + K +R
Sbjct: 574 AEDEAIFEE--AHKQVQR 589
Score = 29.4 bits (65), Expect = 1.4
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 199 YEHLEFQRKVAQ-CY----QMLRDSSWKIIDACQSIEDVEKQ-LKEIVLDQVTACK--KG 250
+ H++F+ Q Y + D+ D C+ ++D+ K L + +D + K
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 251 KPFSLLW 257
L W
Sbjct: 63 GTLRLFW 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.018
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 39/106 (36%)
Query: 145 DRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLY-------LDI----PPEKAAERGG 193
D Y +A+ + W +A D+ LDI P GG
Sbjct: 1634 DLYK----TSKAAQDV---WNRA--------DNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 194 YGGERYEHLEFQRKVAQCYQ-MLRDSSWKIIDACQSIEDVEKQLKE 238
G +++ + Y M+ ++ I+D E + K++ E
Sbjct: 1679 EKG---------KRIRENYSAMIFET---IVDGKLKTEKIFKEINE 1712
Score = 28.9 bits (64), Expect = 2.4
Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 64/155 (41%)
Query: 42 SSSSLRIGNIDSRGALVV------LEGLDR-------CGKTSQC------------SRLL 76
+ + I ++ LVV L GL+ Q +R L
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 77 --------SYLEG---------LGHSVEL----WRFPDRTTSVGQMISAYLSNQSHLDDH 115
L + ++V + P T G S+ L
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-------SDLRVLSGS 474
Query: 116 TIHLLFSAN-----RWEKRSMMEAKLKAGTTLIVD 145
+ +WE + T I+D
Sbjct: 475 ISERIVDCIIRLPVKWET------TTQFKATHILD 503
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.059
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 39/65 (60%)
Query: 127 EKRSM--MEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDSVLYLDIP 184
EK+++ ++A LK L A DS L I
Sbjct: 18 EKQALKKLQASLK----------------------------------LYADDSAPALAI- 42
Query: 185 PEKAA 189
KA
Sbjct: 43 --KAT 45
Score = 27.6 bits (60), Expect = 3.2
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 227 QSIEDVEKQLKEIVLDQVTA 246
Q+++ ++ LK D A
Sbjct: 20 QALKKLQASLKLYADDSAPA 39
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 31.6 bits (71), Expect = 0.20
Identities = 29/211 (13%), Positives = 70/211 (33%), Gaps = 23/211 (10%)
Query: 50 NIDSRGALVVLEGLDRCGKTSQCSRL---LSYLEGLGHSVELWRFPDRTTSVGQMISAYL 106
++ V++EG GKT+ + + + L VE WR + + M Y
Sbjct: 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELM---YK 71
Query: 107 SNQSHLDDHTIHLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWC- 165
+ ++ + + + ++ RY + + +
Sbjct: 72 DPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNT 131
Query: 166 ------KAPEIGLLAPDSVLYLDIPPEKAAER---GGYGGERYEHLEFQRKVAQCY---- 212
E + D ++YL PE A ER E L++ +++ + +
Sbjct: 132 LEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL 191
Query: 213 ---QMLRDSSWKIIDACQSIEDVEKQLKEIV 240
+ + ++DA ++E++ + +
Sbjct: 192 IHQRRPQSCKVLVLDADLNLENIGTEYQRSE 222
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 30.6 bits (68), Expect = 0.41
Identities = 38/247 (15%), Positives = 74/247 (29%), Gaps = 47/247 (19%)
Query: 41 ESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGH---SVELWRF-PDRTT 96
S S + +R + +EG GK++ + L E V W
Sbjct: 10 RSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQD 69
Query: 97 SVGQMISAYLSNQSHLDD---HTIHLLFSANRWEKRSMMEAKLKAGT------------- 140
++ + + + L F+ + S + A+L +
Sbjct: 70 EFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFF 129
Query: 141 --TLIVDRYSYSGVAFSSAKGIDIEWCKAPEI---------GLLAPDSVLYLDIPPEKAA 189
++ DRY ++ + S + EW + L D ++YL PE
Sbjct: 130 ERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCL 189
Query: 190 ERGGYGG----------------ERYEHLEFQRKVAQCYQMLRDSSWKIIDACQSIEDVE 233
R G ++E R + + L++ +D + +D
Sbjct: 190 HRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKY 249
Query: 234 KQLKEIV 240
+ L E V
Sbjct: 250 ESLVEKV 256
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 30.5 bits (68), Expect = 0.57
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 36 TPFRMESSSSLRIGNIDSRGALV-VLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPD- 93
P S G + V V+ GL GKT +L YL +G +++ +
Sbjct: 15 VPVDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74
Query: 94 RTTSVGQMISAYL 106
R +V Q S
Sbjct: 75 RREAVKQYSSYNF 87
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 30.1 bits (68), Expect = 0.70
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 21/96 (21%)
Query: 109 QSHLDDHTIHLLFSANR----WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSA------K 158
++ + W + A+ G + +G A +
Sbjct: 329 FVAFMKRVQPIVAKYGKTVVGWH--QLAGAEPVEGALVQYWGLDRTGDAEKAEVAEAARN 386
Query: 159 GIDIEWCKAPEIGLLAPDSVLYLDIPPEKAAERGGY 194
G + +L+P YLD+ K G
Sbjct: 387 GTGL---------ILSPADRTYLDMKYTKDTPLGLS 413
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 29.9 bits (68), Expect = 0.86
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 142 LIVDRYSYSGVAFSSAKGIDIE--WCKAPEIGLLAPDSVLYLDIPPEKAAERGGYGGERY 199
+ R V F G+D+ KA ++ L+ D L + K ++
Sbjct: 123 IYATREG-DYVLFHHEGGVDVGDVDAKAQKL-LVGVDEKLNPE--DIKKHLLVHAPEDKK 178
Query: 200 EHLEFQRKVAQCYQMLRD 217
E ++ + D
Sbjct: 179 E--ILASFISGLFNFYED 194
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 29.1 bits (66), Expect = 0.96
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 49 GNIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV 86
G + G +VVL G GK++ L + L SV
Sbjct: 14 GQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 51
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 29.2 bits (65), Expect = 0.96
Identities = 19/190 (10%), Positives = 48/190 (25%), Gaps = 42/190 (22%)
Query: 58 VVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLDDHTI 117
++L G GKT+ L G +VG + + +
Sbjct: 14 ILLTGTPGVGKTTLGKELA---SKSGLKYI---------NVGDLAR----------EEQL 51
Query: 118 HLLFSANRWEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEWCKAPEIGLLAPDS 177
+ + + + + G+ +++
Sbjct: 52 YDGYDEEYDCPILDEDRVVDELDNQM------------REGGVIVDYHGCDFFPERWFHI 99
Query: 178 VLYLDIPPEK----AAERGGYGGERYEHLEFQRKVAQCYQMLRDSSWK---IIDACQSIE 230
V L RG + ++++ + Y+ S + E
Sbjct: 100 VFVLRTDTNVLYERLETRGYNEKKLTDNIQCEI-FQVLYEEATASYKEEIVHQLPSNKPE 158
Query: 231 DVEKQLKEIV 240
++E + +I+
Sbjct: 159 ELENNVDQIL 168
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 29.4 bits (67), Expect = 1.2
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 212 YQMLRDSSWKIIDA 225
YQ++R++S ++
Sbjct: 261 YQIMRNASMAVLRE 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 28.2 bits (64), Expect = 1.8
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 50 NIDSRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSV 86
N ++ L ++ GKTS L+ L + S+
Sbjct: 2 NAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISI 38
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 28.3 bits (64), Expect = 2.3
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 40 MESSSSLRIGNIDSRGALVVLEGLDRCGKTSQCSRLLSY--LEGLGHSV 86
M S + ++G L ++ GK+S LL L SV
Sbjct: 1 MGSDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 49
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.7 bits (61), Expect = 4.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 58 VVLEGLDRCGKTSQCSRLLS 77
++L G GK+S S + S
Sbjct: 6 LLLMGRSGSGKSSMRSIIFS 25
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 27.3 bits (60), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 57 LVVLEGLDRCGKTSQCSRLLS 77
+V+L G+ RCGK+S C +
Sbjct: 1 MVLLMGVRRCGKSSICKVVFH 21
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.2 bits (60), Expect = 4.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 58 VVLEGLDRCGKTSQCSRLLS 77
++L GL R GK+S +
Sbjct: 23 ILLMGLRRSGKSSIQKVVFH 42
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 27.0 bits (60), Expect = 7.3
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 109 QSHLDDHTIHLLFSANR----WEKRSMMEAKLKAGTTLIVDRYSYSGVAFSSAKGIDIEW 164
S L R W++ + + L G + R Y G + KG D+
Sbjct: 344 HSWFVGQLALHLKHHGRATSVWDE--IGDGGLPDGALVASWR-GYEGGIDALRKGYDV-- 398
Query: 165 CKAPEIGLLAPDSVLYLDIPPEKAAERGGYGG 196
++ P+ LYLD + G
Sbjct: 399 -------VMCPEHKLYLDHRQADGDDEPVPVG 423
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 26.8 bits (59), Expect = 8.0
Identities = 21/152 (13%), Positives = 37/152 (24%), Gaps = 50/152 (32%)
Query: 53 SRGALVVLEGLDRCGKTSQCSRLLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHL 112
L++L GL GK++ L L V +
Sbjct: 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG---------------------S 40
Query: 113 DDHTIHLLFSANRWEK---RSMMEAK--LKAGTTLIVD--------RYSYSGVAFSSAKG 159
D ++E+ +S +IVD R + AK
Sbjct: 41 DLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDL----INIAKK 96
Query: 160 IDIEWCKAPEIGLLAPDSVLYLDIPPEKAAER 191
+ + ++YL + R
Sbjct: 97 YNKNYA------------IIYLKASLDVLIRR 116
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC;
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B*
3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Length = 249
Score = 26.8 bits (59), Expect = 8.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 181 LDIPPEKAAERGGYGGERYEHLEF 204
L++P E+A GG G EHL
Sbjct: 209 LNVPQEQAYRTGGKKGLHTEHLGP 232
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 26.7 bits (58), Expect = 8.3
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 178 VLYLDIPPEKAAERGGYGGERYEHLEFQRKVAQCYQMLRDSS---WKIIDACQSIEDVEK 234
V++ A + +R AQ ++ + SS I + + +
Sbjct: 222 VVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQ 281
Query: 235 QLKEIVLDQ 243
+LK I+ +Q
Sbjct: 282 ELKAIIREQ 290
>3if8_A Hzwilch, protein zwilch homolog; incomplete beta-barrel,
alternative splicing, cell cycle, CE division,
kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens}
Length = 339
Score = 26.8 bits (58), Expect = 9.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 75 LLSYLEGLGHSVELWRFPDRTTSVGQMISAYLSNQSHLD 113
LL +GL V W P S +++ +L++ + LD
Sbjct: 277 LLVLADGLRTGVTEWLEPLEAKSAVELVQEFLNDLNKLD 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.416
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,937,496
Number of extensions: 225905
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 52
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)