BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024989
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 33 WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI---------------- 76
WR ++ F + I E + +G+ G +L +VLD+
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 77 DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
++ R K+S GQR+R+ I L+ K+L+LDE T
Sbjct: 132 EVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT 167
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYAT 142
H +S GQ++RV I L+ KVL+LDE T + +E G TII AT
Sbjct: 142 HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIAT 201
Query: 143 HIFDGLENWPSHIVYVAHGKLQL 165
H D + + ++ + G++ L
Sbjct: 202 HDIDIVPLYCDNVFVMKEGRVIL 224
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXX 122
+R E+ + L ID L + ++S GQ++RV + L+K KVLL DE
Sbjct: 112 KRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI 171
Query: 123 XXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMDKVKEASK 177
+E G T +Y TH S I GKL Q P D+V ++ K
Sbjct: 172 MRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP-DEVYDSPK 226
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 62 IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXX 119
ID + R E+ K+L ID L+ ++S GQ++RV I L+K +VLLLDE
Sbjct: 110 IDKKVR-EVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168
Query: 120 XXXXXXXXXKECEERGATIIYATH 143
+ +E G T +Y TH
Sbjct: 169 RLEVRAELKRLQKELGITTVYVTH 192
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 42 FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDIDL----SWRMHKVSDGQRRRVQIC 96
E PIQ + G++ D + RA + + + ID + +H +S GQ++RV I
Sbjct: 115 MEAPIQ--------VLGLSKHDARERALKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIA 165
Query: 97 MGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIV 156
L VLL DE T + EE G T++ TH + SH++
Sbjct: 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVI 224
Query: 157 YVAHGKLQ 164
++ GK++
Sbjct: 225 FLHQGKIE 232
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 34 RREVAFAGFEVPIQMDVS-AEKMIFGV-------AGIDPQRR--------AELIKVLDID 77
R ++A E P D S AE +I+G+ A ++ R AEL + +
Sbjct: 1152 RSQIAIVSQE-PTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETR 1210
Query: 78 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
+ R ++S GQ++R+ I L++ K+LLLDE T
Sbjct: 1211 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 1245
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 81 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
R ++S GQ++R+ I L++ K+LLLDE T
Sbjct: 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
+S GQR+R+ I L+ K+L+ DE T K C +G T+I H
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHR 197
Query: 145 FDGLENWPSHIVYVAHGKL 163
++N I+ + GK+
Sbjct: 198 LSTVKN-ADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
+S GQR+R+ I L+ K+L+ DE T K C +G T+I H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHR 203
Query: 145 FDGLENWPSHIVYVAHGKL 163
++N I+ + GK+
Sbjct: 204 LSTVKN-ADRIIVMEKGKI 221
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
+S GQR+R+ I L+ K+L+ DE T K C +G T+I H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHR 199
Query: 145 FDGLENWPSHIVYVAHGKL 163
++N I+ + GK+
Sbjct: 200 LSTVKN-ADRIIVMEKGKI 217
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
+S GQR+R+ I L+ K+L+ DE T K C +G T+I H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHR 199
Query: 145 FDGLENWPSHIVYVAHGKL 163
++N I+ + GK+
Sbjct: 200 LSTVKN-ADRIIVMEKGKI 217
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEIT 112
+S GQ++R+ I LLK K+LLLDE T
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEAT 542
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEIT 112
+S GQ++R+ I LLK K+LLLDE T
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEAT 511
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXX 127
AEL+ + ++ L+ + ++S GQR+RV + +++ +V L+DE
Sbjct: 124 AELLGLTEL-LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 128 XKECEERGATIIYATH 143
K + G T IY TH
Sbjct: 183 KKLQRQLGVTTIYVTH 198
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 52 AEKMIFGV--AG----IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPF 103
AE M FG+ AG + QR ++ +VL + L + +S GQR+RV I L+
Sbjct: 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152
Query: 104 KVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
V LLDE + + G T+IY TH
Sbjct: 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 52 AEKMIFGV--AG----IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPF 103
AE M FG+ AG + QR ++ +VL + L + +S GQR+RV I L+
Sbjct: 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152
Query: 104 KVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
V LLDE + + G T+IY TH
Sbjct: 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
+S GQR+R+ I L+ K+L+ D+ T K C +G T+I H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC--KGRTVIIIAHR 203
Query: 145 FDGLENWPSHIVYVAHGKL 163
++N I+ + GK+
Sbjct: 204 LSTVKN-ADRIIVMEKGKI 221
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
+S GQ++RV I L KVLL DE T G TI+ TH
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 144 IFDGLENWPSHIVYVAHGKL 163
D ++ + +++G+L
Sbjct: 200 EMDVVKRICDCVAVISNGEL 219
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
D + R ++S GQ++R+ I L++ K+LLLDE T
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
++S GQ++R+ I L++ +LLLDE T K E G T I H
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAH 1228
Query: 144 IFDGLENWPSHIVYVAHGKLQ 164
++N IV + +GK++
Sbjct: 1229 RLSTIQN-ADLIVVIQNGKVK 1248
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
D + R ++S GQ++R+ I L++ K+LLLDE T
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
++S GQ++R+ I L++ +LLLDE T K E G T I H
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAH 1228
Query: 144 IFDGLENWPSHIVYVAHGKLQ 164
++N IV + +GK++
Sbjct: 1229 RLSTIQN-ADLIVVIQNGKVK 1248
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYA 141
+S GQR+R+ I L+ K+L+ DE T K C+ R II A
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAA 196
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYA 141
+S GQR+R+ I L+ K+L+ DE T K C+ R II A
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAA 202
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYA 141
K+S G+++RV I +LK ++LLDE T K C R TI+ A
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR-TTIVVA 246
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXX 122
+R E+ K+LDI L+ ++S GQ++RV + L+K +LLLDE
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDE-PFSNLDARMRD 177
Query: 123 XXXXXXKECEER-GATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMD 170
KE + R G T++ +H + + + GKL Q+ P D
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEIT 112
+S GQR+RV I LL+ VL+LDE T
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEAT 508
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 29 LGGEWRREVAFAGFEVPIQMDVSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHK 84
G +R +A+ P +++A M G ++G PQ D ++ ++
Sbjct: 105 FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQ 156
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
+S GQR+ V + L++ ++L+LD+ T + E T++ TH
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
Query: 145 FDGLENWPSHIVYVAHGKL 163
L HI+++ G +
Sbjct: 217 LS-LAERAHHILFLKEGSV 234
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 52 AEKMIFGV--AG----IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPF 103
AE M FG+ AG + QR ++ +VL + L + +S GQR+RV I L+
Sbjct: 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152
Query: 104 KVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
V LLD+ + + G T+IY TH
Sbjct: 153 SVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%)
Query: 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
+S GQ++RV I L KVLL D+ T G TI+ TH
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 144 IFDGLENWPSHIVYVAHGKL 163
D ++ + +++G+L
Sbjct: 223 EMDVVKRICDCVAVISNGEL 242
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYAT 142
H++S GQ++RV + L +VLL DE + +E G T ++ T
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203
Query: 143 H 143
H
Sbjct: 204 H 204
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEIT 112
+S GQR+R+ I LL+ +L+LDE T
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEAT 508
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEIT 112
+S GQR+R+ I LL+ +L+LDE T
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEAT 508
>pdb|1ZC6|A Chain A, Crystal Structure Of Putative N-Acetylglucosamine Kinase
From Chromobacterium Violaceum. Northeast Structural
Genomics Target Cvr23.
pdb|1ZC6|B Chain B, Crystal Structure Of Putative N-Acetylglucosamine Kinase
From Chromobacterium Violaceum. Northeast Structural
Genomics Target Cvr23
Length = 305
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKV 85
L ++GG+W+ A+ G P Q A ++ A +DP+ A L++ D +W + +
Sbjct: 189 LDFVGGDWQAXXAWNGRATPAQFARLA-PLVLSAARVDPEADA-LLRQAGED-AWAIARA 245
Query: 86 SDGQRR-RVQICMGLLKPFK 104
D Q V +C GL + +
Sbjct: 246 LDPQDELPVALCGGLGQALR 265
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 143
+S GQ++RV I L KVLL D+ T G TI+ TH
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 144 IFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174
D ++ + +++G+L + D V E
Sbjct: 223 EXDVVKRICDCVAVISNGEL---IEQDTVSE 250
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 84 KVSDGQRRRVQICMGLLKPFKVLLLDEIT 112
K+S G+R+R+ I LLK K+++ DE T
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEAT 183
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHI 144
+S GQR+ + I + K++LLDE T + + T+++ TH
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH- 187
Query: 145 FDGLENWPSHIVYVAHGKLQL 165
P+ +V +A+ L L
Sbjct: 188 ------QPNQVVAIANKTLLL 202
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXX 127
AEL+++ ++ L+ ++S GQR+RV + ++ VLL+DE
Sbjct: 127 AELLQIEEL-LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 185
Query: 128 XKECEERGATIIYATH 143
K ++ T IY TH
Sbjct: 186 KKLQQKLKVTTIYVTH 201
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXX 127
AEL+++ ++ L+ ++S GQR+RV + ++ VLL+DE
Sbjct: 126 AELLQIEEL-LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 184
Query: 128 XKECEERGATIIYATH 143
K ++ T IY TH
Sbjct: 185 KKLQQKLKVTTIYVTH 200
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 29 LGGEWRREVAFAGFEVPIQMDVSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHK 84
G +R +A+ P +++A M G ++G PQ D ++ ++
Sbjct: 105 FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQ 156
Query: 85 VSDGQRRRVQICMGLLKPFKVLLLDEIT 112
+S GQR+ V + L++ ++L+LD T
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNAT 184
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 86 SDGQRRRVQICMGLLKPFKVLLLDEIT 112
S GQ++R+ I L+K KVL+LD+ T
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCT 507
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,523,969
Number of Sequences: 62578
Number of extensions: 217791
Number of successful extensions: 491
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 42
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)