Query 024989
Match_columns 259
No_of_seqs 382 out of 3031
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.2E-49 4.7E-54 335.3 18.0 175 2-177 26-228 (240)
2 COG1125 OpuBA ABC-type proline 100.0 1.3E-46 2.8E-51 324.9 17.1 177 3-179 26-230 (309)
3 COG1131 CcmA ABC-type multidru 100.0 5.8E-45 1.3E-49 328.2 21.5 236 3-254 30-290 (293)
4 COG1135 AbcC ABC-type metal io 100.0 3E-45 6.4E-50 324.1 17.3 177 3-179 31-236 (339)
5 COG1120 FepC ABC-type cobalami 100.0 7.2E-45 1.6E-49 319.0 16.8 174 3-176 27-230 (258)
6 COG1116 TauB ABC-type nitrate/ 100.0 2.3E-44 5E-49 311.4 17.0 164 2-165 27-213 (248)
7 PRK13537 nodulation ABC transp 100.0 1.8E-43 3.8E-48 320.4 22.4 172 3-175 32-228 (306)
8 TIGR01188 drrA daunorubicin re 100.0 1.8E-43 4E-48 319.6 22.1 249 3-254 18-300 (302)
9 COG1127 Ttg2A ABC-type transpo 100.0 5.6E-44 1.2E-48 306.4 17.6 173 3-175 33-236 (263)
10 COG1136 SalX ABC-type antimicr 100.0 2.4E-43 5.2E-48 303.9 19.1 161 3-164 30-221 (226)
11 COG1124 DppF ABC-type dipeptid 100.0 1.5E-43 3.2E-48 304.6 17.2 174 2-175 31-232 (252)
12 PRK13536 nodulation factor exp 100.0 9.4E-43 2E-47 319.7 22.7 172 3-175 66-262 (340)
13 COG4555 NatA ABC-type Na+ tran 100.0 2E-43 4.3E-48 296.0 16.1 173 3-176 27-224 (245)
14 COG3842 PotA ABC-type spermidi 100.0 8E-44 1.7E-48 324.7 14.8 177 2-178 29-230 (352)
15 COG4152 ABC-type uncharacteriz 100.0 3.7E-43 8.1E-48 301.8 17.6 242 3-254 27-294 (300)
16 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5E-43 1.1E-47 306.1 18.4 171 3-175 29-228 (254)
17 TIGR03522 GldA_ABC_ATP gliding 100.0 1.9E-42 4.1E-47 312.9 21.3 243 3-254 27-300 (301)
18 TIGR01288 nodI ATP-binding ABC 100.0 2.8E-42 6.1E-47 312.0 22.0 171 3-174 29-224 (303)
19 COG3839 MalK ABC-type sugar tr 100.0 7.3E-43 1.6E-47 316.8 17.0 175 3-177 28-226 (338)
20 COG1122 CbiO ABC-type cobalt t 100.0 9E-43 2E-47 304.0 16.9 173 3-175 29-229 (235)
21 COG1118 CysA ABC-type sulfate/ 100.0 9.2E-43 2E-47 307.8 16.3 176 3-178 27-231 (345)
22 COG3638 ABC-type phosphate/pho 100.0 1E-42 2.2E-47 298.0 14.5 173 3-175 29-238 (258)
23 TIGR02314 ABC_MetN D-methionin 100.0 9.7E-42 2.1E-46 313.1 21.0 173 3-175 30-231 (343)
24 PRK11650 ugpC glycerol-3-phosp 100.0 1E-41 2.2E-46 314.7 20.3 174 3-176 29-226 (356)
25 COG3840 ThiQ ABC-type thiamine 100.0 3.3E-42 7.2E-47 284.6 15.1 173 3-175 24-220 (231)
26 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-41 3.7E-46 295.7 19.1 172 3-174 25-226 (235)
27 TIGR03265 PhnT2 putative 2-ami 100.0 2.5E-41 5.3E-46 311.8 20.2 174 3-176 29-226 (353)
28 TIGR01186 proV glycine betaine 100.0 3.7E-41 8.1E-46 311.1 21.2 173 3-175 18-220 (363)
29 PRK11432 fbpC ferric transport 100.0 3.2E-41 6.9E-46 310.7 20.2 174 3-176 31-228 (351)
30 COG4175 ProV ABC-type proline/ 100.0 1.6E-41 3.5E-46 300.8 16.5 177 2-178 52-258 (386)
31 PRK10851 sulfate/thiosulfate t 100.0 7.2E-41 1.6E-45 308.7 20.5 174 3-176 27-228 (353)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 7.1E-41 1.5E-45 309.5 20.5 174 3-176 30-230 (362)
33 cd03256 ABC_PhnC_transporter A 100.0 9.3E-41 2E-45 291.6 19.2 171 3-173 26-233 (241)
34 COG1117 PstB ABC-type phosphat 100.0 2E-41 4.4E-46 286.2 14.1 172 3-177 32-240 (253)
35 PRK09452 potA putrescine/sperm 100.0 1.3E-40 2.7E-45 309.0 20.4 174 3-176 39-236 (375)
36 PRK11144 modC molybdate transp 100.0 1.2E-40 2.7E-45 307.2 20.0 174 3-176 23-220 (352)
37 cd03259 ABC_Carb_Solutes_like 100.0 8.5E-41 1.8E-45 287.1 17.6 165 3-167 25-213 (213)
38 PRK11000 maltose/maltodextrin 100.0 1.3E-40 2.9E-45 308.6 20.3 173 3-175 28-224 (369)
39 cd03296 ABC_CysA_sulfate_impor 100.0 2E-40 4.4E-45 289.8 20.1 172 3-174 27-226 (239)
40 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-40 2.7E-45 291.3 18.6 172 2-173 26-234 (243)
41 PRK11153 metN DL-methionine tr 100.0 2E-40 4.3E-45 304.8 20.6 173 3-175 30-231 (343)
42 cd03219 ABC_Mj1267_LivG_branch 100.0 1.6E-40 3.5E-45 289.4 18.7 171 3-174 25-232 (236)
43 cd03265 ABC_DrrA DrrA is the A 100.0 2.1E-40 4.7E-45 286.1 19.3 170 3-172 25-219 (220)
44 PRK11607 potG putrescine trans 100.0 1.9E-40 4.1E-45 308.2 19.8 174 3-176 44-241 (377)
45 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.7E-40 3.6E-45 286.8 18.0 168 3-170 29-219 (220)
46 cd03258 ABC_MetN_methionine_tr 100.0 3.5E-40 7.6E-45 287.0 19.8 171 3-173 30-229 (233)
47 PRK10070 glycine betaine trans 100.0 7.5E-40 1.6E-44 305.8 21.3 173 3-175 53-255 (400)
48 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.6E-40 1.4E-44 291.8 20.0 173 3-175 49-251 (269)
49 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.1E-40 1.1E-44 281.9 18.2 165 3-167 23-211 (211)
50 COG1137 YhbG ABC-type (unclass 100.0 2.6E-40 5.7E-45 276.9 15.9 173 3-176 29-230 (243)
51 PRK09536 btuD corrinoid ABC tr 100.0 5E-40 1.1E-44 307.1 19.7 172 3-175 28-229 (402)
52 PRK13637 cbiO cobalt transport 100.0 9.6E-40 2.1E-44 293.4 20.8 172 3-174 32-234 (287)
53 PRK15079 oligopeptide ABC tran 100.0 5.5E-40 1.2E-44 300.5 19.5 174 3-176 46-253 (331)
54 cd03268 ABC_BcrA_bacitracin_re 100.0 5.1E-40 1.1E-44 281.3 17.8 164 3-167 25-208 (208)
55 TIGR02142 modC_ABC molybdenum 100.0 7.4E-40 1.6E-44 302.2 20.1 173 3-175 22-222 (354)
56 PRK11247 ssuB aliphatic sulfon 100.0 8E-40 1.7E-44 289.7 19.3 168 3-170 37-219 (257)
57 cd03226 ABC_cobalt_CbiO_domain 100.0 7.2E-40 1.6E-44 280.0 18.2 161 3-164 25-205 (205)
58 TIGR00960 3a0501s02 Type II (G 100.0 2.5E-40 5.5E-45 284.7 15.4 160 3-163 28-216 (216)
59 PRK11308 dppF dipeptide transp 100.0 1E-39 2.2E-44 298.3 19.3 174 3-176 40-246 (327)
60 COG0411 LivG ABC-type branched 100.0 6.3E-40 1.4E-44 282.3 16.5 174 3-176 29-241 (250)
61 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-39 2.3E-44 281.6 18.1 170 3-173 25-220 (222)
62 PRK11831 putative ABC transpor 100.0 1.9E-39 4E-44 288.9 20.2 172 3-174 32-233 (269)
63 PRK10771 thiQ thiamine transpo 100.0 2.4E-39 5.3E-44 281.8 20.2 172 3-174 24-219 (232)
64 cd03218 ABC_YhbG The ABC trans 100.0 1.4E-39 3.1E-44 282.8 18.4 171 3-174 25-222 (232)
65 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.4E-39 3.1E-44 284.9 18.5 172 3-174 26-225 (242)
66 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.1E-40 1.7E-44 281.8 16.6 160 3-163 29-218 (218)
67 COG2884 FtsE Predicted ATPase 100.0 1.1E-39 2.5E-44 271.1 16.8 164 3-167 27-219 (223)
68 cd03301 ABC_MalK_N The N-termi 100.0 9.8E-40 2.1E-44 280.3 17.1 165 3-167 25-213 (213)
69 TIGR01184 ntrCD nitrate transp 100.0 1.3E-39 2.8E-44 283.5 18.0 170 3-172 10-202 (230)
70 TIGR03415 ABC_choXWV_ATP choli 100.0 2.8E-39 6.1E-44 300.1 21.3 173 3-175 49-255 (382)
71 PRK13634 cbiO cobalt transport 100.0 1.5E-39 3.2E-44 292.6 18.8 171 3-174 32-235 (290)
72 PRK11022 dppD dipeptide transp 100.0 2.2E-39 4.9E-44 295.9 19.7 174 3-176 32-245 (326)
73 COG0444 DppD ABC-type dipeptid 100.0 1.5E-39 3.3E-44 290.2 18.0 177 3-179 30-248 (316)
74 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.9E-39 6.3E-44 282.0 19.1 171 3-174 26-221 (236)
75 PRK11300 livG leucine/isoleuci 100.0 2.4E-39 5.2E-44 285.3 18.7 172 3-174 30-243 (255)
76 PRK15093 antimicrobial peptide 100.0 3.1E-39 6.7E-44 295.5 19.9 174 2-175 31-249 (330)
77 PRK14250 phosphate ABC transpo 100.0 5.4E-39 1.2E-43 281.4 20.2 172 2-174 27-221 (241)
78 PRK10575 iron-hydroxamate tran 100.0 2.7E-39 5.8E-44 287.2 18.5 172 3-174 36-237 (265)
79 PRK11264 putative amino-acid A 100.0 5.2E-39 1.1E-43 282.4 20.1 171 3-174 28-233 (250)
80 TIGR03005 ectoine_ehuA ectoine 100.0 3.4E-39 7.3E-44 284.2 18.8 173 3-175 25-237 (252)
81 PRK13647 cbiO cobalt transport 100.0 2.1E-39 4.6E-44 289.4 17.7 169 3-172 30-225 (274)
82 PRK09493 glnQ glutamine ABC tr 100.0 3.1E-39 6.6E-44 282.4 18.4 171 3-174 26-225 (240)
83 cd03297 ABC_ModC_molybdenum_tr 100.0 2.7E-39 5.9E-44 278.1 17.5 163 5-167 24-214 (214)
84 TIGR03410 urea_trans_UrtE urea 100.0 4.6E-39 9.9E-44 279.4 19.1 171 3-173 25-220 (230)
85 cd03235 ABC_Metallic_Cations A 100.0 2.8E-39 6E-44 277.7 17.4 162 3-166 24-212 (213)
86 PRK13651 cobalt transporter AT 100.0 3.1E-39 6.7E-44 292.5 18.5 171 3-174 32-254 (305)
87 cd03263 ABC_subfamily_A The AB 100.0 4E-39 8.7E-44 277.8 18.3 168 3-172 27-219 (220)
88 PRK11629 lolD lipoprotein tran 100.0 3.7E-39 8E-44 280.8 18.3 165 3-168 34-228 (233)
89 cd03269 ABC_putative_ATPase Th 100.0 2.4E-39 5.2E-44 277.5 16.8 164 3-167 25-210 (210)
90 cd03266 ABC_NatA_sodium_export 100.0 2.3E-39 4.9E-44 279.0 16.7 164 3-167 30-218 (218)
91 PRK13650 cbiO cobalt transport 100.0 4.5E-39 9.7E-44 287.9 18.6 172 3-175 32-230 (279)
92 TIGR02770 nickel_nikD nickel i 100.0 7.3E-39 1.6E-43 278.6 19.3 173 2-174 10-215 (230)
93 PRK10253 iron-enterobactin tra 100.0 5.1E-39 1.1E-43 285.3 18.6 172 3-174 32-233 (265)
94 PRK10895 lipopolysaccharide AB 100.0 6.7E-39 1.5E-43 280.4 19.0 171 3-174 28-226 (241)
95 PRK09473 oppD oligopeptide tra 100.0 6.5E-39 1.4E-43 293.3 19.7 174 3-176 41-253 (330)
96 TIGR01277 thiQ thiamine ABC tr 100.0 6.7E-39 1.5E-43 275.6 18.5 166 3-168 23-212 (213)
97 TIGR02211 LolD_lipo_ex lipopro 100.0 7.3E-39 1.6E-43 276.4 18.7 161 3-164 30-220 (221)
98 PRK10619 histidine/lysine/argi 100.0 6.8E-39 1.5E-43 283.1 18.8 171 3-174 30-241 (257)
99 TIGR03411 urea_trans_UrtD urea 100.0 7.3E-39 1.6E-43 280.2 18.8 170 3-174 27-231 (242)
100 PRK13643 cbiO cobalt transport 100.0 6.6E-39 1.4E-43 288.1 19.0 170 3-174 31-233 (288)
101 PRK13548 hmuV hemin importer A 100.0 1.1E-38 2.3E-43 282.4 19.9 172 3-174 27-230 (258)
102 PRK11124 artP arginine transpo 100.0 5.9E-39 1.3E-43 280.9 18.0 170 3-173 27-229 (242)
103 PRK13646 cbiO cobalt transport 100.0 6.5E-39 1.4E-43 287.9 18.3 171 3-174 32-235 (286)
104 COG1123 ATPase components of v 100.0 5E-39 1.1E-43 305.0 18.2 175 3-177 316-522 (539)
105 PRK13641 cbiO cobalt transport 100.0 1.2E-38 2.7E-43 286.2 19.8 171 3-174 32-234 (287)
106 TIGR02673 FtsE cell division A 100.0 3.4E-39 7.4E-44 277.2 15.3 159 3-162 27-214 (214)
107 TIGR03740 galliderm_ABC gallid 100.0 1.3E-38 2.9E-43 275.5 19.0 168 3-171 25-210 (223)
108 PRK11248 tauB taurine transpor 100.0 9.6E-39 2.1E-43 282.4 18.4 167 3-169 26-215 (255)
109 PRK11614 livF leucine/isoleuci 100.0 7.1E-39 1.5E-43 279.6 17.1 171 3-174 30-226 (237)
110 PRK09984 phosphonate/organopho 100.0 1.1E-38 2.3E-43 282.7 18.4 170 3-172 29-240 (262)
111 PRK13636 cbiO cobalt transport 100.0 1.2E-38 2.5E-43 285.8 18.8 172 3-174 31-231 (283)
112 cd03225 ABC_cobalt_CbiO_domain 100.0 5.8E-39 1.3E-43 275.2 16.1 159 3-162 26-211 (211)
113 cd03260 ABC_PstB_phosphate_tra 100.0 8.8E-39 1.9E-43 277.1 17.4 166 3-171 25-226 (227)
114 PRK10584 putative ABC transpor 100.0 1.4E-38 2.9E-43 276.1 18.4 163 3-166 35-227 (228)
115 TIGR02769 nickel_nikE nickel i 100.0 1.2E-38 2.6E-43 283.0 18.4 172 3-174 36-240 (265)
116 cd03257 ABC_NikE_OppD_transpor 100.0 1.8E-38 3.9E-43 274.8 19.1 165 3-167 30-228 (228)
117 PRK11231 fecE iron-dicitrate t 100.0 1.5E-38 3.3E-43 280.6 18.5 171 3-174 27-227 (255)
118 PRK13652 cbiO cobalt transport 100.0 1.5E-38 3.3E-43 284.2 18.7 172 3-174 29-227 (277)
119 PRK10908 cell division protein 100.0 1.9E-38 4E-43 274.4 18.6 162 3-165 27-217 (222)
120 TIGR00972 3a0107s01c2 phosphat 100.0 2.2E-38 4.8E-43 278.2 19.1 169 3-174 26-232 (247)
121 cd03292 ABC_FtsE_transporter F 100.0 7E-39 1.5E-43 275.0 15.3 160 3-163 26-214 (214)
122 PRK15112 antimicrobial peptide 100.0 2.2E-38 4.8E-43 281.7 18.9 173 3-175 38-240 (267)
123 TIGR01187 potA spermidine/putr 100.0 1.5E-38 3.3E-43 290.4 18.4 167 9-175 1-191 (325)
124 cd03264 ABC_drug_resistance_li 100.0 1.5E-38 3.3E-43 272.7 17.3 162 3-167 25-211 (211)
125 COG4148 ModC ABC-type molybdat 100.0 4.9E-39 1.1E-43 280.9 14.2 173 3-175 22-219 (352)
126 COG4598 HisP ABC-type histidin 100.0 6.8E-39 1.5E-43 264.8 14.3 175 3-178 31-245 (256)
127 PRK13635 cbiO cobalt transport 100.0 2.3E-38 5E-43 283.4 19.0 171 3-174 32-229 (279)
128 PRK10418 nikD nickel transport 100.0 5.4E-38 1.2E-42 277.1 21.0 173 3-175 28-231 (254)
129 cd03262 ABC_HisP_GlnQ_permease 100.0 9.3E-39 2E-43 274.1 15.6 160 3-163 25-213 (213)
130 COG4181 Predicted ABC-type tra 100.0 1.3E-38 2.7E-43 261.2 15.4 162 3-165 35-226 (228)
131 TIGR03771 anch_rpt_ABC anchore 100.0 4E-38 8.6E-43 273.0 18.9 171 2-174 4-201 (223)
132 PRK13638 cbiO cobalt transport 100.0 2.2E-38 4.7E-43 282.2 17.7 171 3-174 26-225 (271)
133 cd03299 ABC_ModC_like Archeal 100.0 6.6E-38 1.4E-42 273.6 20.4 172 3-174 24-219 (235)
134 TIGR03873 F420-0_ABC_ATP propo 100.0 3.9E-38 8.5E-43 278.1 19.1 171 3-174 26-226 (256)
135 PRK14247 phosphate ABC transpo 100.0 5.2E-38 1.1E-42 276.1 19.8 170 3-174 28-234 (250)
136 cd03300 ABC_PotA_N PotA is an 100.0 9.3E-38 2E-42 272.0 21.0 172 3-174 25-220 (232)
137 PRK11701 phnK phosphonate C-P 100.0 3.1E-38 6.8E-43 279.1 18.1 173 3-175 31-242 (258)
138 TIGR01978 sufC FeS assembly AT 100.0 4.6E-38 1E-42 274.9 18.8 170 3-173 25-233 (243)
139 PRK13631 cbiO cobalt transport 100.0 5.7E-38 1.2E-42 286.0 19.5 170 3-174 51-265 (320)
140 PRK13644 cbiO cobalt transport 100.0 4.5E-38 9.7E-43 280.8 18.4 170 3-174 27-224 (274)
141 COG0410 LivF ABC-type branched 100.0 4.2E-38 9E-43 269.1 17.3 173 3-175 28-227 (237)
142 PRK03695 vitamin B12-transport 100.0 9.8E-38 2.1E-42 274.7 20.2 171 3-174 21-222 (248)
143 PRK13639 cbiO cobalt transport 100.0 4.2E-38 9E-43 281.1 17.9 171 3-174 27-226 (275)
144 PRK13649 cbiO cobalt transport 100.0 8.3E-38 1.8E-42 279.6 19.8 170 3-174 32-234 (280)
145 PRK13640 cbiO cobalt transport 100.0 7E-38 1.5E-42 280.6 19.4 171 3-174 32-232 (282)
146 PRK10261 glutathione transport 100.0 3.4E-38 7.4E-43 310.2 19.0 173 3-175 349-554 (623)
147 PRK14268 phosphate ABC transpo 100.0 1.4E-37 3E-42 275.1 20.7 169 3-174 37-242 (258)
148 PRK13645 cbiO cobalt transport 100.0 6E-38 1.3E-42 281.8 18.7 172 3-174 36-240 (289)
149 COG1123 ATPase components of v 100.0 4.5E-38 9.7E-43 298.5 18.5 176 3-178 34-248 (539)
150 PRK14267 phosphate ABC transpo 100.0 8.5E-38 1.8E-42 275.3 19.0 170 3-174 29-237 (253)
151 TIGR01257 rim_protein retinal- 100.0 2.5E-37 5.4E-42 329.3 26.0 249 3-255 1964-2249(2272)
152 PRK13633 cobalt transporter AT 100.0 8.5E-38 1.8E-42 279.8 19.0 171 3-174 35-233 (280)
153 PRK13632 cbiO cobalt transport 100.0 9.3E-38 2E-42 278.2 19.2 171 3-174 34-231 (271)
154 PRK14242 phosphate transporter 100.0 1.1E-37 2.3E-42 274.6 19.2 170 3-175 31-238 (253)
155 PRK09544 znuC high-affinity zi 100.0 1.1E-37 2.4E-42 275.1 19.1 168 3-174 29-209 (251)
156 PRK10762 D-ribose transporter 100.0 5.6E-38 1.2E-42 301.6 18.7 171 3-174 29-230 (501)
157 PRK15439 autoinducer 2 ABC tra 100.0 1E-37 2.2E-42 300.4 20.5 171 3-174 36-229 (510)
158 cd03267 ABC_NatA_like Similar 100.0 1.2E-37 2.6E-42 272.2 18.9 165 3-167 46-236 (236)
159 PRK14273 phosphate ABC transpo 100.0 1.4E-37 3E-42 274.2 19.3 170 3-175 32-239 (254)
160 PRK13648 cbiO cobalt transport 100.0 1.6E-37 3.4E-42 276.3 19.7 171 3-174 34-231 (269)
161 PRK15134 microcin C ABC transp 100.0 8.4E-38 1.8E-42 302.1 19.3 172 3-174 311-515 (529)
162 PRK10744 pstB phosphate transp 100.0 2E-37 4.4E-42 274.3 20.1 169 3-174 38-244 (260)
163 PRK14269 phosphate ABC transpo 100.0 1.6E-37 3.5E-42 272.7 19.1 169 3-174 27-230 (246)
164 TIGR02323 CP_lyasePhnK phospho 100.0 1.8E-37 3.8E-42 273.2 19.2 172 3-174 28-238 (253)
165 TIGR00968 3a0106s01 sulfate AB 100.0 2.2E-37 4.7E-42 270.6 19.5 173 2-174 24-220 (237)
166 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-37 2.5E-42 300.5 19.1 172 3-174 309-517 (520)
167 PRK13642 cbiO cobalt transport 100.0 2.3E-37 5E-42 276.6 19.6 171 3-174 32-229 (277)
168 PRK09700 D-allose transporter 100.0 9.1E-38 2E-42 300.6 18.2 171 3-174 30-234 (510)
169 PRK13549 xylose transporter AT 100.0 1.2E-37 2.7E-42 299.5 18.7 171 3-174 30-232 (506)
170 PRK14239 phosphate transporter 100.0 2.5E-37 5.5E-42 272.0 18.8 170 3-175 30-237 (252)
171 PRK14245 phosphate ABC transpo 100.0 2.5E-37 5.3E-42 272.0 18.3 170 3-175 28-235 (250)
172 PRK14256 phosphate ABC transpo 100.0 4.1E-37 8.9E-42 270.9 19.6 171 3-175 29-237 (252)
173 cd03252 ABCC_Hemolysin The ABC 100.0 3.2E-37 7E-42 269.0 18.7 169 3-175 27-226 (237)
174 PRK13547 hmuV hemin importer A 100.0 3.8E-37 8.2E-42 274.7 19.3 172 3-174 26-244 (272)
175 PRK14270 phosphate ABC transpo 100.0 4.7E-37 1E-41 270.4 19.7 170 3-175 29-236 (251)
176 PRK14241 phosphate transporter 100.0 2.9E-37 6.3E-42 272.9 18.2 170 3-174 29-242 (258)
177 PRK15134 microcin C ABC transp 100.0 2.4E-37 5.2E-42 299.0 19.2 172 3-174 34-246 (529)
178 PRK14235 phosphate transporter 100.0 4.4E-37 9.6E-42 273.3 19.4 169 3-174 44-251 (267)
179 PRK10982 galactose/methyl gala 100.0 2.9E-37 6.3E-42 295.9 19.5 170 3-173 23-222 (491)
180 PRK10261 glutathione transport 100.0 1.4E-37 3E-42 305.9 17.7 172 3-174 41-258 (623)
181 PRK10419 nikE nickel transport 100.0 3.1E-37 6.8E-42 274.5 18.3 172 3-174 37-241 (268)
182 PRK14274 phosphate ABC transpo 100.0 5.3E-37 1.2E-41 271.3 19.3 170 3-175 37-244 (259)
183 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.3E-37 1.1E-41 270.1 18.6 167 3-173 24-206 (246)
184 PRK14259 phosphate ABC transpo 100.0 6.8E-37 1.5E-41 272.5 19.3 169 3-174 38-253 (269)
185 PRK14240 phosphate transporter 100.0 8.5E-37 1.8E-41 268.5 19.3 169 3-174 28-234 (250)
186 PRK14248 phosphate ABC transpo 100.0 6.7E-37 1.5E-41 272.1 18.7 170 3-175 46-253 (268)
187 PRK14258 phosphate ABC transpo 100.0 7.4E-37 1.6E-41 270.9 18.7 172 3-175 32-246 (261)
188 PRK14244 phosphate ABC transpo 100.0 5.5E-37 1.2E-41 269.9 17.7 170 3-175 30-238 (251)
189 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8.9E-37 1.9E-41 266.4 18.7 168 3-174 28-226 (238)
190 COG4172 ABC-type uncharacteriz 100.0 5.2E-37 1.1E-41 279.3 17.7 176 3-178 312-520 (534)
191 PRK11288 araG L-arabinose tran 100.0 4.7E-37 1E-41 295.1 18.5 170 3-173 278-484 (501)
192 PRK14262 phosphate ABC transpo 100.0 8.1E-37 1.8E-41 268.6 18.3 169 3-174 28-234 (250)
193 cd03245 ABCC_bacteriocin_expor 100.0 5.3E-37 1.1E-41 264.6 16.8 160 3-166 29-219 (220)
194 PRK14251 phosphate ABC transpo 100.0 1E-36 2.2E-41 268.1 18.7 169 3-174 29-235 (251)
195 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-36 2.7E-41 264.6 18.9 168 3-174 27-225 (234)
196 PRK09700 D-allose transporter 100.0 4.9E-37 1.1E-41 295.6 18.1 166 3-169 288-493 (510)
197 PRK15056 manganese/iron transp 100.0 9E-37 2E-41 272.0 18.2 170 3-174 32-230 (272)
198 PRK13549 xylose transporter AT 100.0 4.3E-37 9.2E-42 295.8 17.3 170 3-173 287-493 (506)
199 PRK15439 autoinducer 2 ABC tra 100.0 4.3E-37 9.3E-42 296.1 17.2 171 3-174 288-492 (510)
200 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-36 2.6E-41 293.5 20.1 172 3-174 25-258 (520)
201 PRK14272 phosphate ABC transpo 100.0 1.8E-36 3.9E-41 266.5 19.5 170 3-174 29-236 (252)
202 cd03254 ABCC_Glucan_exporter_l 100.0 1.5E-36 3.2E-41 263.4 18.5 168 3-174 28-226 (229)
203 TIGR02633 xylG D-xylose ABC tr 100.0 8.8E-37 1.9E-41 293.1 18.7 170 3-173 26-229 (500)
204 cd03234 ABCG_White The White s 100.0 1.4E-36 3.1E-41 263.4 18.2 164 3-167 32-226 (226)
205 PRK10762 D-ribose transporter 100.0 7E-37 1.5E-41 294.0 17.4 170 3-173 277-483 (501)
206 PRK14275 phosphate ABC transpo 100.0 3.3E-36 7.1E-41 270.4 20.5 170 3-175 64-271 (286)
207 TIGR02982 heterocyst_DevA ABC 100.0 7.6E-37 1.7E-41 264.1 15.8 160 3-163 30-219 (220)
208 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.7E-36 3.6E-41 271.0 18.4 169 3-175 29-226 (275)
209 PRK14237 phosphate transporter 100.0 2.3E-36 4.9E-41 268.7 19.1 169 3-174 45-251 (267)
210 PRK14243 phosphate transporter 100.0 2.2E-36 4.7E-41 268.5 18.9 170 3-175 35-249 (264)
211 PRK14253 phosphate ABC transpo 100.0 3E-36 6.6E-41 264.8 19.4 169 3-174 28-233 (249)
212 PRK14249 phosphate ABC transpo 100.0 3.1E-36 6.8E-41 265.1 19.5 170 3-175 29-236 (251)
213 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.6E-36 5.6E-41 258.4 18.4 157 3-168 33-206 (207)
214 PRK14254 phosphate ABC transpo 100.0 2.3E-36 5E-41 271.3 18.7 169 3-174 64-269 (285)
215 PRK11288 araG L-arabinose tran 100.0 1.9E-36 4.1E-41 291.0 19.3 166 3-169 29-224 (501)
216 PRK10247 putative ABC transpor 100.0 1.7E-36 3.7E-41 263.0 17.0 164 3-168 32-221 (225)
217 PRK10938 putative molybdenum t 100.0 1.2E-36 2.5E-41 291.6 17.1 170 3-174 28-224 (490)
218 PRK14255 phosphate ABC transpo 100.0 3.7E-36 7.9E-41 264.7 18.8 170 3-175 30-237 (252)
219 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-36 2.6E-41 292.1 17.1 169 3-172 285-490 (500)
220 PRK14263 phosphate ABC transpo 100.0 3.2E-36 6.9E-41 267.1 18.5 169 3-174 33-245 (261)
221 cd03253 ABCC_ATM1_transporter 100.0 4.7E-36 1E-40 261.3 19.0 168 3-174 26-224 (236)
222 PRK14236 phosphate transporter 100.0 3.1E-36 6.8E-41 268.5 18.3 169 3-174 50-256 (272)
223 PRK14265 phosphate ABC transpo 100.0 4.4E-36 9.4E-41 268.0 19.1 170 3-175 45-259 (274)
224 PRK14260 phosphate ABC transpo 100.0 3.6E-36 7.9E-41 266.1 18.4 170 2-174 31-243 (259)
225 PRK14238 phosphate transporter 100.0 6.2E-36 1.3E-40 266.6 19.9 170 3-175 49-256 (271)
226 CHL00131 ycf16 sulfate ABC tra 100.0 5.5E-36 1.2E-40 263.4 19.4 168 3-171 32-238 (252)
227 COG4608 AppF ABC-type oligopep 100.0 2.1E-36 4.6E-41 264.9 16.5 156 2-179 37-204 (268)
228 cd03244 ABCC_MRP_domain2 Domai 100.0 4E-36 8.7E-41 259.3 17.7 162 3-168 29-220 (221)
229 cd03230 ABC_DR_subfamily_A Thi 100.0 2.6E-36 5.7E-41 251.8 15.9 133 3-163 25-173 (173)
230 PRK14257 phosphate ABC transpo 100.0 7.9E-36 1.7E-40 272.8 20.3 170 3-175 107-314 (329)
231 PRK14271 phosphate ABC transpo 100.0 4.8E-36 1E-40 268.1 18.4 170 3-175 46-252 (276)
232 TIGR03608 L_ocin_972_ABC putat 100.0 2.2E-36 4.8E-41 258.1 15.4 154 3-158 23-206 (206)
233 PRK14261 phosphate ABC transpo 100.0 6.9E-36 1.5E-40 263.2 19.0 169 3-174 31-237 (253)
234 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.9E-36 1.3E-40 259.6 18.0 160 3-167 47-224 (224)
235 COG4161 ArtP ABC-type arginine 100.0 1.6E-36 3.5E-41 247.1 13.2 170 3-173 27-229 (242)
236 cd03214 ABC_Iron-Siderophores_ 100.0 2.5E-36 5.4E-41 253.5 14.4 137 3-166 24-179 (180)
237 PRK09580 sufC cysteine desulfu 100.0 1.7E-35 3.6E-40 259.6 19.7 169 3-172 26-233 (248)
238 COG2274 SunT ABC-type bacterio 100.0 5.8E-36 1.3E-40 295.6 18.3 169 3-175 498-697 (709)
239 PRK11174 cysteine/glutathione 100.0 8.9E-36 1.9E-40 291.1 19.4 169 3-175 375-573 (588)
240 PRK14246 phosphate ABC transpo 100.0 2E-35 4.3E-40 261.5 19.8 171 3-175 35-242 (257)
241 cd03229 ABC_Class3 This class 100.0 7.3E-36 1.6E-40 250.3 15.9 135 3-162 25-178 (178)
242 PRK13538 cytochrome c biogenes 100.0 6.8E-36 1.5E-40 255.5 16.0 155 3-158 26-202 (204)
243 COG4988 CydD ABC-type transpor 100.0 7.1E-36 1.5E-40 283.0 17.7 171 3-176 346-545 (559)
244 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.4E-35 3E-40 253.0 17.4 145 3-170 25-190 (200)
245 PRK14266 phosphate ABC transpo 100.0 1.4E-35 3.1E-40 260.6 17.9 169 3-174 28-234 (250)
246 cd03246 ABCC_Protease_Secretio 100.0 7.9E-36 1.7E-40 249.0 15.2 130 3-163 27-173 (173)
247 COG4525 TauB ABC-type taurine 100.0 8.1E-36 1.8E-40 249.3 15.1 168 3-170 30-220 (259)
248 PRK13543 cytochrome c biogenes 100.0 1.4E-35 3.1E-40 255.4 17.1 157 3-160 36-212 (214)
249 PRK13546 teichoic acids export 100.0 4.3E-35 9.4E-40 260.4 20.5 167 3-175 49-233 (264)
250 cd03215 ABC_Carb_Monos_II This 100.0 8.4E-36 1.8E-40 250.7 14.9 137 3-163 25-182 (182)
251 cd03231 ABC_CcmA_heme_exporter 100.0 2E-35 4.3E-40 252.2 17.1 155 3-158 25-198 (201)
252 PRK14252 phosphate ABC transpo 100.0 2.9E-35 6.2E-40 261.2 18.7 169 3-174 41-249 (265)
253 COG4559 ABC-type hemin transpo 100.0 1.1E-35 2.4E-40 251.1 15.1 173 3-176 26-232 (259)
254 COG4604 CeuD ABC-type enteroch 100.0 2.3E-36 5.1E-41 252.7 10.6 173 3-175 26-226 (252)
255 cd03247 ABCC_cytochrome_bd The 100.0 1.8E-35 4E-40 247.7 15.7 136 3-167 27-178 (178)
256 PRK13539 cytochrome c biogenes 100.0 2.2E-35 4.9E-40 252.9 16.5 155 3-160 27-200 (207)
257 cd03233 ABC_PDR_domain1 The pl 100.0 2.7E-35 5.9E-40 251.7 16.9 151 3-167 32-202 (202)
258 cd03232 ABC_PDR_domain2 The pl 100.0 1.7E-35 3.6E-40 251.0 15.1 144 3-167 32-192 (192)
259 PRK10982 galactose/methyl gala 100.0 2.3E-35 5E-40 282.8 17.9 169 3-172 273-478 (491)
260 PRK14264 phosphate ABC transpo 100.0 4.6E-35 1E-39 265.2 18.9 169 3-174 70-289 (305)
261 TIGR01257 rim_protein retinal- 100.0 3.2E-35 7E-40 313.2 20.7 173 2-176 954-1151(2272)
262 cd03288 ABCC_SUR2 The SUR doma 100.0 5.8E-35 1.3E-39 258.2 18.9 168 3-174 46-243 (257)
263 TIGR02324 CP_lyasePhnL phospho 100.0 4.1E-35 9E-40 253.6 17.2 156 3-159 33-223 (224)
264 cd03248 ABCC_TAP TAP, the Tran 100.0 2.3E-35 5E-40 255.6 15.5 158 2-163 38-226 (226)
265 COG4586 ABC-type uncharacteriz 100.0 9.1E-36 2E-40 259.7 12.6 174 3-176 49-248 (325)
266 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.6E-35 1.4E-39 289.8 20.2 166 3-175 478-674 (686)
267 PRK15064 ABC transporter ATP-b 100.0 6E-35 1.3E-39 282.3 19.3 165 3-174 344-525 (530)
268 PRK10790 putative multidrug tr 100.0 1E-34 2.2E-39 283.9 20.4 169 3-175 366-564 (592)
269 PRK15064 ABC transporter ATP-b 100.0 1.1E-34 2.4E-39 280.5 20.4 165 3-174 26-242 (530)
270 cd03250 ABCC_MRP_domain1 Domai 100.0 9.4E-35 2E-39 248.1 17.4 152 3-162 30-204 (204)
271 cd03213 ABCG_EPDR ABCG transpo 100.0 5.3E-35 1.2E-39 248.4 15.8 143 3-166 34-193 (194)
272 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.7E-35 1.7E-39 290.2 19.2 167 3-175 504-701 (710)
273 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-34 2.6E-39 249.9 17.8 157 3-162 26-218 (218)
274 PRK11160 cysteine/glutathione 100.0 8.3E-35 1.8E-39 283.8 18.9 169 3-175 365-563 (574)
275 COG1132 MdlB ABC-type multidru 100.0 7.6E-35 1.6E-39 283.6 18.4 169 3-175 354-553 (567)
276 COG1129 MglA ABC-type sugar tr 100.0 9E-35 2E-39 274.3 18.0 176 3-179 33-240 (500)
277 KOG0058 Peptide exporter, ABC 100.0 8.1E-35 1.8E-39 280.8 17.6 171 3-176 493-693 (716)
278 PRK11176 lipid transporter ATP 100.0 1.3E-34 2.8E-39 282.5 19.1 169 3-175 368-568 (582)
279 TIGR01166 cbiO cobalt transpor 100.0 8.4E-35 1.8E-39 245.8 15.1 145 3-148 17-190 (190)
280 TIGR03375 type_I_sec_LssB type 100.0 1.8E-34 3.8E-39 287.1 19.7 168 3-174 490-688 (694)
281 PRK11819 putative ABC transpor 100.0 3E-34 6.5E-39 279.0 20.8 165 3-174 32-250 (556)
282 PLN03211 ABC transporter G-25; 100.0 1.2E-34 2.5E-39 286.2 18.1 171 3-174 93-296 (659)
283 PRK13545 tagH teichoic acids e 100.0 3.2E-34 6.8E-39 273.2 20.1 167 3-175 49-233 (549)
284 PRK15177 Vi polysaccharide exp 100.0 2.1E-34 4.6E-39 248.2 17.2 165 3-174 12-192 (213)
285 PRK13409 putative ATPase RIL; 100.0 1.3E-34 2.9E-39 282.7 17.7 161 3-169 364-537 (590)
286 COG3845 ABC-type uncharacteriz 100.0 9.4E-35 2E-39 270.3 15.7 165 3-168 29-223 (501)
287 COG4987 CydC ABC-type transpor 100.0 5.1E-35 1.1E-39 274.2 13.8 169 3-175 363-562 (573)
288 KOG0055 Multidrug/pheromone ex 100.0 1.1E-34 2.3E-39 293.3 17.2 170 3-176 378-578 (1228)
289 PRK10938 putative molybdenum t 100.0 5.9E-35 1.3E-39 279.8 14.5 165 3-167 285-485 (490)
290 cd03216 ABC_Carb_Monos_I This 100.0 2E-34 4.4E-39 238.5 15.7 120 3-165 25-162 (163)
291 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.5E-34 1.6E-38 254.7 20.4 163 3-174 62-247 (282)
292 TIGR01193 bacteriocin_ABC ABC- 100.0 3E-34 6.5E-39 286.0 19.3 168 3-175 499-698 (708)
293 PRK13657 cyclic beta-1,2-gluca 100.0 4.3E-34 9.3E-39 279.4 19.5 169 3-175 360-559 (588)
294 COG4619 ABC-type uncharacteriz 100.0 4.5E-35 9.8E-40 239.6 10.6 161 3-163 28-212 (223)
295 TIGR00958 3a01208 Conjugate Tr 100.0 3.3E-34 7.2E-39 285.8 19.1 167 3-175 506-703 (711)
296 TIGR01189 ccmA heme ABC export 100.0 3.2E-34 7E-39 243.9 15.8 153 2-157 24-197 (198)
297 COG4172 ABC-type uncharacteriz 100.0 3.8E-34 8.2E-39 260.7 16.7 177 3-179 35-252 (534)
298 KOG0057 Mitochondrial Fe/S clu 100.0 2.5E-34 5.4E-39 269.9 16.0 169 3-174 377-574 (591)
299 PRK13540 cytochrome c biogenes 100.0 3.3E-34 7.3E-39 244.3 15.4 152 3-156 26-197 (200)
300 TIGR01842 type_I_sec_PrtD type 100.0 7.9E-34 1.7E-38 275.3 19.9 169 3-174 343-542 (544)
301 cd03228 ABCC_MRP_Like The MRP 100.0 3.4E-34 7.4E-39 238.7 14.7 128 3-162 27-171 (171)
302 PRK10789 putative multidrug tr 100.0 8.1E-34 1.8E-38 276.6 19.4 169 3-175 340-539 (569)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.3E-34 2E-38 275.3 19.7 166 3-175 30-249 (552)
304 TIGR01192 chvA glucan exporter 100.0 1.2E-33 2.7E-38 276.2 20.3 169 3-175 360-559 (585)
305 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.8E-34 1.3E-38 252.0 15.5 161 3-166 25-219 (255)
306 TIGR02203 MsbA_lipidA lipid A 100.0 7.9E-34 1.7E-38 276.2 17.9 169 3-175 357-557 (571)
307 PRK10636 putative ABC transpor 100.0 9E-34 1.9E-38 279.5 18.2 165 2-173 336-516 (638)
308 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-33 2.5E-38 281.3 19.1 169 3-175 482-681 (694)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.6E-33 5.6E-38 272.2 20.5 165 3-174 347-531 (552)
310 cd03238 ABC_UvrA The excision 100.0 1.7E-33 3.7E-38 236.0 16.2 134 3-163 20-166 (176)
311 PRK11819 putative ABC transpor 100.0 4.1E-33 9E-38 271.0 21.1 166 3-175 349-534 (556)
312 TIGR02204 MsbA_rel ABC transpo 100.0 2.1E-33 4.7E-38 273.5 19.0 168 3-174 365-563 (576)
313 cd03223 ABCD_peroxisomal_ALDP 100.0 1.9E-33 4.1E-38 233.4 15.6 130 3-162 26-164 (166)
314 PRK13541 cytochrome c biogenes 100.0 1.5E-33 3.3E-38 239.4 14.0 150 3-155 25-192 (195)
315 TIGR00955 3a01204 The Eye Pigm 100.0 2.4E-33 5.1E-38 275.7 17.3 171 3-174 50-256 (617)
316 cd03222 ABC_RNaseL_inhibitor T 100.0 3.5E-33 7.5E-38 234.4 15.1 127 3-172 24-161 (177)
317 PLN03232 ABC transporter C fam 100.0 8.1E-33 1.8E-37 293.4 20.4 169 3-175 1261-1459(1495)
318 PLN03130 ABC transporter C fam 100.0 1.4E-32 3E-37 292.6 20.9 169 3-175 1264-1462(1622)
319 PRK11147 ABC transporter ATPas 100.0 1.1E-32 2.5E-37 271.7 18.9 165 2-173 343-527 (635)
320 PLN03073 ABC transporter F fam 100.0 1.6E-32 3.5E-37 272.9 19.6 164 3-173 534-713 (718)
321 PRK10535 macrolide transporter 100.0 1E-32 2.2E-37 272.5 18.0 169 3-173 33-231 (648)
322 PTZ00265 multidrug resistance 100.0 1E-32 2.2E-37 291.3 18.9 170 3-174 1193-1452(1466)
323 KOG0055 Multidrug/pheromone ex 100.0 9.4E-33 2E-37 279.3 17.0 170 3-175 1015-1214(1228)
324 PRK10522 multidrug transporter 100.0 1.2E-32 2.6E-37 267.2 17.1 160 3-167 348-531 (547)
325 TIGR00957 MRP_assoc_pro multi 100.0 2.3E-32 5E-37 290.3 19.5 169 3-175 1311-1509(1522)
326 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.7E-32 3.6E-37 266.7 16.6 160 3-166 367-551 (555)
327 PRK11147 ABC transporter ATPas 100.0 6.1E-32 1.3E-36 266.5 20.8 165 3-174 28-243 (635)
328 PRK10636 putative ABC transpor 100.0 7.2E-32 1.6E-36 266.0 20.7 164 3-174 26-236 (638)
329 PTZ00243 ABC transporter; Prov 100.0 4.9E-32 1.1E-36 287.8 20.7 169 3-175 1335-1534(1560)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.4E-32 5.1E-37 221.9 14.0 111 3-162 25-144 (144)
331 COG1119 ModF ABC-type molybden 100.0 1.1E-32 2.3E-37 237.7 12.3 166 3-168 56-256 (257)
332 PRK13409 putative ATPase RIL; 100.0 2.6E-32 5.6E-37 266.6 14.8 155 3-161 98-287 (590)
333 PTZ00265 multidrug resistance 100.0 4.7E-32 1E-36 286.3 17.7 157 3-161 410-655 (1466)
334 COG4674 Uncharacterized ABC-ty 100.0 3.6E-32 7.8E-37 227.3 13.1 172 2-175 29-236 (249)
335 TIGR02857 CydD thiol reductant 100.0 1.1E-31 2.4E-36 259.3 16.9 152 3-158 347-529 (529)
336 TIGR00956 3a01205 Pleiotropic 100.0 9.2E-32 2E-36 283.5 17.3 168 3-171 788-990 (1394)
337 COG4618 ArpD ABC-type protease 100.0 1.1E-31 2.3E-36 250.4 15.4 170 3-175 361-561 (580)
338 TIGR01271 CFTR_protein cystic 100.0 2E-31 4.3E-36 282.7 19.5 168 3-174 1244-1440(1490)
339 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-31 2.6E-36 282.5 17.5 172 3-174 86-300 (1394)
340 COG1101 PhnK ABC-type uncharac 100.0 1.4E-31 3E-36 226.7 14.2 170 2-171 30-235 (263)
341 COG0488 Uup ATPase components 100.0 3.3E-31 7.2E-36 254.5 18.5 167 2-175 27-241 (530)
342 KOG0059 Lipid exporter ABCA1 a 100.0 8.4E-32 1.8E-36 273.5 15.1 174 3-177 590-790 (885)
343 cd03270 ABC_UvrA_I The excisio 100.0 4E-31 8.6E-36 229.9 17.2 98 68-167 118-226 (226)
344 PLN03140 ABC transporter G fam 100.0 1.2E-31 2.6E-36 282.5 15.7 172 3-174 190-427 (1470)
345 PLN03140 ABC transporter G fam 100.0 3.7E-31 7.9E-36 278.9 18.6 167 3-170 905-1106(1470)
346 TIGR02868 CydC thiol reductant 100.0 3.8E-31 8.1E-36 255.6 15.4 140 3-145 360-529 (529)
347 cd00267 ABC_ATPase ABC (ATP-bi 100.0 8.9E-31 1.9E-35 214.9 14.6 117 3-162 24-157 (157)
348 COG0396 sufC Cysteine desulfur 100.0 2E-30 4.2E-35 221.6 16.5 170 3-174 29-233 (251)
349 COG4107 PhnK ABC-type phosphon 100.0 9.8E-31 2.1E-35 215.5 13.5 176 2-177 30-244 (258)
350 KOG0061 Transporter, ABC super 100.0 9.5E-31 2.1E-35 256.4 14.9 171 3-174 55-260 (613)
351 TIGR00954 3a01203 Peroxysomal 100.0 2.7E-30 5.8E-35 255.7 17.5 148 3-159 477-652 (659)
352 TIGR01271 CFTR_protein cystic 100.0 3.2E-30 7E-35 273.5 18.5 162 3-174 451-636 (1490)
353 cd03271 ABC_UvrA_II The excisi 100.0 3.6E-30 7.7E-35 228.2 14.6 103 65-169 147-261 (261)
354 TIGR00957 MRP_assoc_pro multi 100.0 6.5E-30 1.4E-34 271.7 19.3 165 3-174 663-850 (1522)
355 COG4136 ABC-type uncharacteriz 100.0 1.6E-30 3.6E-35 209.5 10.3 156 2-158 26-207 (213)
356 PLN03130 ABC transporter C fam 100.0 1.8E-29 3.9E-34 268.8 19.9 163 3-174 642-828 (1622)
357 PLN03232 ABC transporter C fam 100.0 1.6E-29 3.4E-34 268.4 19.0 163 3-174 642-828 (1495)
358 COG4167 SapF ABC-type antimicr 100.0 3.5E-29 7.7E-34 207.7 16.2 177 3-179 38-244 (267)
359 COG1134 TagH ABC-type polysacc 100.0 2.6E-29 5.7E-34 216.8 15.8 167 2-174 51-236 (249)
360 PLN03073 ABC transporter F fam 100.0 9.5E-30 2.1E-34 253.1 14.9 106 65-174 322-431 (718)
361 PTZ00243 ABC transporter; Prov 100.0 3.4E-29 7.4E-34 266.2 19.5 165 3-175 685-871 (1560)
362 COG0488 Uup ATPase components 100.0 2.5E-28 5.5E-33 234.6 17.7 165 2-174 346-525 (530)
363 KOG0056 Heavy metal exporter H 100.0 3.9E-29 8.4E-34 232.2 11.6 171 3-176 563-763 (790)
364 cd03278 ABC_SMC_barmotin Barmo 100.0 8.5E-29 1.8E-33 211.1 12.2 142 3-160 22-190 (197)
365 KOG2355 Predicted ABC-type tra 100.0 1.4E-28 3.1E-33 207.3 12.8 188 3-191 39-255 (291)
366 COG5265 ATM1 ABC-type transpor 100.0 1.3E-28 2.8E-33 225.5 12.4 171 2-175 287-487 (497)
367 COG1129 MglA ABC-type sugar tr 100.0 1.1E-27 2.5E-32 226.2 15.4 170 3-173 284-489 (500)
368 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.3E-27 2.9E-32 205.7 13.2 153 3-162 27-210 (213)
369 COG4138 BtuD ABC-type cobalami 99.9 6.5E-29 1.4E-33 204.8 3.2 172 3-175 24-222 (248)
370 COG4133 CcmA ABC-type transpor 99.9 2.8E-27 6E-32 196.8 11.4 146 3-149 27-194 (209)
371 cd03272 ABC_SMC3_euk Eukaryoti 99.9 9.7E-27 2.1E-31 203.5 15.3 155 2-159 21-234 (243)
372 KOG0054 Multidrug resistance-a 99.9 3.2E-26 7E-31 236.2 17.1 163 3-174 546-731 (1381)
373 KOG0054 Multidrug resistance-a 99.9 2.4E-26 5.2E-31 237.2 15.6 170 3-176 1165-1364(1381)
374 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.2E-26 4.7E-31 202.9 12.5 154 3-159 24-242 (251)
375 COG4778 PhnL ABC-type phosphon 99.9 9.8E-27 2.1E-31 191.1 8.2 157 3-160 36-227 (235)
376 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.3E-26 7.1E-31 195.4 10.7 150 3-162 20-192 (198)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.8E-27 3.8E-32 205.2 2.6 153 4-160 25-204 (212)
378 cd03240 ABC_Rad50 The catalyti 99.9 5.6E-26 1.2E-30 194.8 11.8 147 4-161 22-198 (204)
379 PRK00349 uvrA excinuclease ABC 99.9 1.1E-24 2.5E-29 220.8 18.7 106 68-175 811-928 (943)
380 PF00005 ABC_tran: ABC transpo 99.9 1.4E-25 3.1E-30 179.1 7.8 105 3-113 10-137 (137)
381 cd03275 ABC_SMC1_euk Eukaryoti 99.9 8.7E-25 1.9E-29 192.4 11.3 96 63-160 110-233 (247)
382 PRK00635 excinuclease ABC subu 99.9 4.6E-24 9.9E-29 225.2 16.5 104 69-174 791-906 (1809)
383 COG1245 Predicted ATPase, RNas 99.9 2.1E-24 4.6E-29 199.5 12.1 151 3-159 366-530 (591)
384 TIGR00630 uvra excinuclease AB 99.9 4.8E-24 1E-28 216.0 15.0 103 68-172 809-923 (924)
385 KOG0062 ATPase component of AB 99.9 4.2E-25 9.2E-30 206.4 5.3 168 3-174 105-285 (582)
386 COG4170 SapD ABC-type antimicr 99.9 3.3E-24 7.1E-29 181.7 5.6 178 1-178 30-252 (330)
387 KOG0065 Pleiotropic drug resis 99.9 4.7E-24 1E-28 216.8 7.5 170 2-172 815-1019(1391)
388 KOG0927 Predicted transporter 99.9 5E-23 1.1E-27 193.5 11.7 103 69-174 203-309 (614)
389 KOG0927 Predicted transporter 99.9 4E-23 8.6E-28 194.2 10.6 164 4-174 416-596 (614)
390 COG4615 PvdE ABC-type sideroph 99.9 2E-23 4.4E-28 190.3 6.2 157 3-166 348-529 (546)
391 KOG0062 ATPase component of AB 99.9 3.6E-22 7.7E-27 186.9 11.1 159 6-171 392-566 (582)
392 COG3845 ABC-type uncharacteriz 99.9 8.4E-22 1.8E-26 184.0 13.4 170 3-173 283-491 (501)
393 cd03277 ABC_SMC5_euk Eukaryoti 99.9 6.8E-22 1.5E-26 170.6 11.4 85 79-163 121-212 (213)
394 cd03239 ABC_SMC_head The struc 99.8 5.1E-21 1.1E-25 160.8 9.0 74 85-160 95-172 (178)
395 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.5E-21 3.2E-26 166.6 5.3 85 79-166 86-171 (200)
396 KOG0066 eIF2-interacting prote 99.8 1.4E-20 3.1E-25 173.6 11.2 160 6-172 615-789 (807)
397 TIGR00630 uvra excinuclease AB 99.8 2.6E-20 5.7E-25 188.9 13.3 103 70-174 470-583 (924)
398 PRK00349 uvrA excinuclease ABC 99.8 2.4E-20 5.2E-25 189.5 12.7 103 70-174 472-585 (943)
399 COG4178 ABC-type uncharacteriz 99.8 5.1E-20 1.1E-24 177.6 14.0 150 3-159 418-587 (604)
400 COG1245 Predicted ATPase, RNas 99.8 1.3E-20 2.8E-25 174.6 8.0 93 67-160 194-288 (591)
401 cd03227 ABC_Class2 ABC-type Cl 99.8 8.6E-20 1.9E-24 150.8 9.4 75 84-160 77-155 (162)
402 COG0178 UvrA Excinuclease ATPa 99.8 6E-19 1.3E-23 172.5 16.2 104 70-175 805-920 (935)
403 cd03241 ABC_RecN RecN ATPase i 99.8 6.8E-19 1.5E-23 157.4 13.6 78 83-163 169-250 (276)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.8 3.2E-20 6.9E-25 161.1 3.1 140 3-168 29-175 (222)
405 PRK00635 excinuclease ABC subu 99.8 8.5E-19 1.9E-23 185.7 13.5 102 71-174 460-572 (1809)
406 KOG0065 Pleiotropic drug resis 99.8 9.4E-19 2E-23 178.5 10.2 172 3-174 140-351 (1391)
407 cd03243 ABC_MutS_homologs The 99.8 4.2E-19 9.1E-24 151.6 3.7 89 80-171 87-176 (202)
408 KOG0060 Long-chain acyl-CoA tr 99.7 2.6E-17 5.7E-22 156.2 14.1 153 2-160 459-641 (659)
409 COG2401 ABC-type ATPase fused 99.7 4.2E-17 9.2E-22 150.0 13.2 159 3-165 408-589 (593)
410 KOG0066 eIF2-interacting prote 99.7 7.6E-19 1.6E-23 162.3 1.5 101 66-170 391-495 (807)
411 cd03242 ABC_RecF RecF is a rec 99.7 3.5E-17 7.7E-22 145.9 11.1 77 82-163 181-269 (270)
412 cd03283 ABC_MutS-like MutS-lik 99.7 8.2E-18 1.8E-22 143.7 6.5 130 3-158 24-163 (199)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.6 9.9E-17 2.1E-21 137.6 4.5 128 3-153 28-159 (204)
414 smart00534 MUTSac ATPase domai 99.6 3E-17 6.6E-22 138.5 0.7 83 79-163 56-139 (185)
415 KOG0064 Peroxisomal long-chain 99.6 1.8E-15 3.9E-20 142.6 7.8 146 3-158 507-681 (728)
416 TIGR00618 sbcc exonuclease Sbc 99.6 4.4E-15 9.6E-20 154.2 10.9 82 79-161 945-1036(1042)
417 TIGR00634 recN DNA repair prot 99.6 1.2E-14 2.7E-19 141.9 10.4 77 83-162 439-519 (563)
418 cd03284 ABC_MutS1 MutS1 homolo 99.5 2.9E-15 6.2E-20 129.6 4.3 78 92-172 97-179 (216)
419 PHA02562 46 endonuclease subun 99.5 1.1E-14 2.4E-19 141.7 8.7 90 69-163 454-555 (562)
420 KOG0063 RNAse L inhibitor, ABC 99.5 4.3E-14 9.3E-19 130.6 7.9 157 4-160 367-532 (592)
421 PRK10869 recombination and rep 99.5 9.1E-14 2E-18 135.4 10.3 76 84-162 430-509 (553)
422 PF02463 SMC_N: RecF/RecN/SMC 99.5 3.3E-13 7.2E-18 116.2 12.2 87 65-158 121-211 (220)
423 PRK03918 chromosome segregatio 99.5 1.1E-13 2.4E-18 141.3 10.1 80 79-160 783-868 (880)
424 PRK10246 exonuclease subunit S 99.5 1.8E-13 4E-18 142.0 10.4 81 79-160 944-1032(1047)
425 PRK00409 recombination and DNA 99.5 3.3E-14 7.1E-19 143.2 4.1 78 79-158 385-463 (782)
426 TIGR02858 spore_III_AA stage I 99.5 3.2E-13 6.9E-18 120.5 9.7 125 5-172 112-267 (270)
427 PRK01156 chromosome segregatio 99.5 3.3E-13 7.2E-18 138.3 11.1 78 81-159 798-883 (895)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.4 6.5E-13 1.4E-17 114.7 11.2 65 88-152 94-161 (213)
429 cd01124 KaiC KaiC is a circadi 99.4 1.8E-13 3.8E-18 114.4 7.2 140 7-159 2-163 (187)
430 TIGR01069 mutS2 MutS2 family p 99.4 7.2E-14 1.6E-18 140.5 5.3 67 80-148 381-448 (771)
431 TIGR00606 rad50 rad50. This fa 99.4 6.3E-13 1.4E-17 140.9 8.9 73 81-153 1196-1278(1311)
432 TIGR02168 SMC_prok_B chromosom 99.4 1.1E-12 2.4E-17 136.6 7.8 77 80-159 1085-1165(1179)
433 COG0178 UvrA Excinuclease ATPa 99.4 8.6E-12 1.9E-16 122.9 13.1 97 78-176 475-579 (935)
434 PRK13695 putative NTPase; Prov 99.3 1.5E-12 3.2E-17 108.5 2.6 81 80-166 74-156 (174)
435 PRK00064 recF recombination pr 99.3 1.4E-11 3E-16 114.3 8.5 78 82-163 271-359 (361)
436 PRK02224 chromosome segregatio 99.2 1.6E-11 3.5E-16 125.6 9.1 79 81-161 778-869 (880)
437 TIGR02169 SMC_prok_A chromosom 99.2 1.2E-11 2.6E-16 129.1 8.2 77 81-160 1071-1151(1164)
438 PRK08533 flagellar accessory p 99.2 6.5E-11 1.4E-15 103.3 10.4 145 2-159 22-184 (230)
439 KOG0063 RNAse L inhibitor, ABC 99.2 8.7E-12 1.9E-16 115.5 2.3 104 67-171 194-304 (592)
440 PTZ00132 GTP-binding nuclear p 99.2 3.3E-11 7.1E-16 103.4 5.6 49 83-131 149-204 (215)
441 PRK06067 flagellar accessory p 99.1 2.6E-10 5.5E-15 99.4 8.9 148 2-159 23-186 (234)
442 cd01128 rho_factor Transcripti 99.1 5.8E-10 1.3E-14 98.5 9.8 76 83-164 128-212 (249)
443 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1.7E-09 3.6E-14 94.0 11.9 58 92-149 100-158 (222)
444 TIGR00611 recf recF protein. A 99.1 4E-10 8.7E-15 104.8 7.8 62 84-149 275-345 (365)
445 cd03286 ABC_MSH6_euk MutS6 hom 99.0 3.7E-10 8E-15 97.9 6.5 64 89-152 96-160 (218)
446 PRK07721 fliI flagellum-specif 99.0 2.2E-09 4.8E-14 101.8 11.7 58 112-171 277-340 (438)
447 COG0419 SbcC ATPase involved i 99.0 2.6E-09 5.5E-14 110.0 10.1 79 80-160 811-897 (908)
448 cd01125 repA Hexameric Replica 98.9 1.5E-09 3.2E-14 95.0 5.9 126 4-146 1-160 (239)
449 PRK14079 recF recombination pr 98.9 3.7E-09 8E-14 97.8 7.7 77 84-168 263-348 (349)
450 COG3910 Predicted ATPase [Gene 98.9 1.2E-08 2.6E-13 85.8 9.7 82 80-163 125-206 (233)
451 TIGR02680 conserved hypothetic 98.9 4.1E-09 8.8E-14 112.2 7.8 62 81-146 1244-1317(1353)
452 cd01120 RecA-like_NTPases RecA 98.9 5.7E-09 1.2E-13 84.0 6.9 64 84-148 67-140 (165)
453 TIGR02655 circ_KaiC circadian 98.8 1.8E-10 4E-15 110.8 -4.7 70 79-159 110-190 (484)
454 PF13304 AAA_21: AAA domain; P 98.8 2.3E-08 5E-13 84.8 8.7 66 82-148 234-302 (303)
455 PRK06793 fliI flagellum-specif 98.8 1.7E-08 3.7E-13 95.4 7.3 140 2-168 154-305 (432)
456 TIGR00152 dephospho-CoA kinase 98.6 7.4E-09 1.6E-13 87.3 0.6 87 67-161 45-133 (188)
457 PRK05399 DNA mismatch repair p 98.6 2.7E-08 5.8E-13 101.7 3.7 125 4-154 607-738 (854)
458 cd01131 PilT Pilus retraction 98.6 2.3E-07 5E-12 79.1 8.3 57 94-159 66-122 (198)
459 TIGR02788 VirB11 P-type DNA tr 98.5 1.6E-07 3.5E-12 85.4 6.9 72 93-173 209-280 (308)
460 PF13558 SbcCD_C: Putative exo 98.5 3E-07 6.5E-12 68.7 6.1 50 80-129 28-90 (90)
461 smart00382 AAA ATPases associa 98.5 1.4E-06 3E-11 67.2 9.6 64 81-144 57-125 (148)
462 cd00820 PEPCK_HprK Phosphoenol 98.4 1.4E-07 3.1E-12 72.7 3.0 51 3-56 14-75 (107)
463 TIGR03881 KaiC_arch_4 KaiC dom 98.4 1E-06 2.2E-11 76.2 8.1 58 102-159 121-188 (229)
464 PRK13830 conjugal transfer pro 98.3 1.3E-06 2.9E-11 89.1 8.2 69 100-169 650-728 (818)
465 PLN03210 Resistant to P. syrin 98.3 1.5E-06 3.3E-11 91.8 8.1 131 3-159 206-349 (1153)
466 TIGR00416 sms DNA repair prote 98.3 2.7E-06 5.8E-11 81.4 8.2 62 101-162 169-247 (454)
467 cd02023 UMPK Uridine monophosp 98.3 3.6E-07 7.7E-12 77.4 1.9 102 6-117 1-113 (198)
468 TIGR03880 KaiC_arch_3 KaiC dom 98.3 3.5E-06 7.6E-11 72.8 8.2 58 101-159 106-177 (224)
469 cd01122 GP4d_helicase GP4d_hel 98.2 4.7E-06 1E-10 73.8 8.8 139 2-145 28-191 (271)
470 cd01121 Sms Sms (bacterial rad 98.1 2.7E-05 5.8E-10 72.7 12.0 62 100-161 156-234 (372)
471 TIGR01420 pilT_fam pilus retra 98.0 3.3E-05 7.2E-10 71.3 10.1 56 94-158 187-242 (343)
472 PRK11823 DNA repair protein Ra 98.0 8.3E-05 1.8E-09 71.1 11.5 59 101-159 155-230 (446)
473 PF13175 AAA_15: AAA ATPase do 98.0 2.2E-05 4.8E-10 73.0 7.4 67 81-147 338-414 (415)
474 PF00488 MutS_V: MutS domain V 97.9 0.00029 6.3E-09 61.7 13.5 50 100-149 120-170 (235)
475 PRK09302 circadian clock prote 97.9 2.4E-05 5.3E-10 75.8 7.3 58 101-159 129-200 (509)
476 TIGR03238 dnd_assoc_3 dnd syst 97.9 8E-06 1.7E-10 77.9 2.9 31 3-33 31-69 (504)
477 PRK13891 conjugal transfer pro 97.8 2.8E-05 6E-10 79.9 6.1 70 95-165 680-752 (852)
478 TIGR01026 fliI_yscN ATPase Fli 97.8 0.00016 3.5E-09 68.9 10.6 62 108-172 276-346 (440)
479 COG4637 Predicted ATPase [Gene 97.8 0.00012 2.6E-09 66.3 8.6 78 83-162 269-348 (373)
480 TIGR03185 DNA_S_dndD DNA sulfu 97.8 4.4E-05 9.6E-10 76.2 6.3 63 81-148 548-617 (650)
481 PRK06995 flhF flagellar biosyn 97.8 7.6E-05 1.7E-09 71.8 7.5 122 3-143 255-400 (484)
482 TIGR02903 spore_lon_C ATP-depe 97.7 5.9E-05 1.3E-09 74.9 6.5 46 67-129 244-291 (615)
483 cd00984 DnaB_C DnaB helicase C 97.7 0.00025 5.3E-09 61.6 9.3 44 101-145 122-173 (242)
484 PRK14088 dnaA chromosomal repl 97.7 3.7E-05 8E-10 73.4 4.2 69 101-170 193-264 (440)
485 cd00009 AAA The AAA+ (ATPases 97.7 9.6E-05 2.1E-09 57.4 5.8 56 90-146 72-131 (151)
486 TIGR02237 recomb_radB DNA repa 97.7 5.2E-05 1.1E-09 64.6 4.5 59 102-160 97-178 (209)
487 cd01123 Rad51_DMC1_radA Rad51_ 97.7 3.2E-05 7E-10 66.9 3.3 45 102-146 115-171 (235)
488 cd01393 recA_like RecA is a b 97.7 0.00071 1.5E-08 58.1 11.6 48 101-148 113-172 (226)
489 TIGR01070 mutS1 DNA mismatch r 97.7 4.4E-05 9.5E-10 78.2 4.5 65 84-148 651-718 (840)
490 PRK04328 hypothetical protein; 97.6 0.00021 4.4E-09 63.1 8.1 58 102-159 128-195 (249)
491 PTZ00454 26S protease regulato 97.6 0.00011 2.5E-09 69.1 6.4 63 96-163 232-307 (398)
492 PF06745 KaiC: KaiC; InterPro 97.6 4.4E-05 9.6E-10 65.9 2.7 59 101-160 114-185 (226)
493 PTZ00035 Rad51 protein; Provis 97.6 0.00023 4.9E-09 65.7 7.4 46 101-146 212-269 (337)
494 PF13481 AAA_25: AAA domain; P 97.6 0.00061 1.3E-08 56.9 9.4 44 101-144 140-188 (193)
495 PRK09361 radB DNA repair and r 97.5 0.0001 2.2E-09 63.6 4.6 60 101-160 106-190 (225)
496 PRK13764 ATPase; Provisional 97.5 0.00031 6.8E-09 69.2 8.4 57 99-163 321-392 (602)
497 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00049 1.1E-08 60.1 8.4 59 101-159 125-193 (237)
498 cd01394 radB RadB. The archaea 97.5 0.0004 8.7E-09 59.5 7.7 61 101-161 102-187 (218)
499 PF13555 AAA_29: P-loop contai 97.5 3.1E-05 6.7E-10 53.8 0.4 19 4-22 23-41 (62)
500 COG1196 Smc Chromosome segrega 97.5 0.00017 3.6E-09 76.6 6.0 72 82-156 1064-1139(1163)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-49 Score=335.26 Aligned_cols=175 Identities=23% Similarity=0.326 Sum_probs=155.7
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCee---------ccccEEEecccCCCCccCcHHHHHh-c---c
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE---------WRREVAFAGFEVPIQMDVSAEKMIF-G---V 59 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~---------~~~~i~~v~~~~~~~~~lt~~~~~~-~---~ 59 (259)
-+||+++|+|||||||||| +++|+|.++|.+ .|+++|+|+|+.++||++|+.+++. + .
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 3799999999999999999 499999999953 3577999999999999999987653 2 2
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +.+.++|+.+|+. .+.++.+|||||||||+|||||+.+|+++|+|||||+|||+...++++.++++++
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~- 184 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE- 184 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 34443 3345789999996 4678999999999999999999999999999999999999999999999999986
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 177 (259)
.|+|.|++||+|.++.++||||++|++|+++..|++++++....
T Consensus 185 eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 59999999999999999999999999999999999999987644
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=324.86 Aligned_cols=177 Identities=24% Similarity=0.340 Sum_probs=161.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc---cCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG---VAGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~ 62 (259)
+||+++++|||||||||+ +++|+|.++|+++ |++|||+-|+..+||++|+.+++.- +.+|
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 799999999999999999 5999999999864 6789999999999999999987753 3456
Q ss_pred CH----HHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 63 DP----QRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 63 ~~----~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
+. ++++++++.++++ .++++++|||||||||.+||||+.+|++|||||||++|||.+|..+-+.+.++.++.
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l 185 (309)
T COG1125 106 DKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL 185 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh
Confidence 64 3467899999996 367899999999999999999999999999999999999999999999999999888
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~ 179 (259)
|+|||++|||++|+.+++|||.+|++|+++..++|+++.......
T Consensus 186 ~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 999999999999999999999999999999999999998765433
No 3
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.8e-45 Score=328.15 Aligned_cols=236 Identities=22% Similarity=0.333 Sum_probs=184.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHH---hccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMI---FGVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~---~~~~~~~ 63 (259)
+||+++++|||||||||| +++|+|.++|.+. ++.+||++|++.+|+.+|+.+++ ..+++..
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 699999999999999999 5999999999764 35699999999999999998765 2344432
Q ss_pred ----HHHHHHHHHHcCCCc--cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDIDL--SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~~--~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.++++++++.+++.. ++++++||+|||||++||+||+++|++|||||||+||||.++..++++|++++++.|+|
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~t 189 (293)
T COG1131 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189 (293)
T ss_pred hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcE
Confidence 456889999999975 67899999999999999999999999999999999999999999999999998764489
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchHHHHHHHHHhhCCCCCcccCCCCc
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGS 217 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (259)
||+|||.+++++.+||+|++|++|++++.|+++++......... .. ...... .. .. .........
T Consensus 190 vlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~------~~--~~~~~~--~~--~~---~~~~~~~~~ 254 (293)
T COG1131 190 ILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV------IE--LEPERL--EL--AE---LLEGLKLVK 254 (293)
T ss_pred EEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCce------EE--Eecccc--cc--hh---hhhcccccc
Confidence 99999999999999999999999999999999887653211000 00 000000 00 00 000000000
Q ss_pred eeeCCHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989 218 RVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST 254 (259)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~ 254 (259)
. ..........+...++....+.....+||++|+..
T Consensus 255 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (293)
T COG1131 255 G-EEELAEILEALLEEGVKIESIEVKEPSLEDVFLEL 290 (293)
T ss_pred c-chhHHHHHHHHHHcCCceeeeecCCCCHHHHHHHH
Confidence 0 22345567777788888889999999999999864
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-45 Score=324.13 Aligned_cols=177 Identities=24% Similarity=0.320 Sum_probs=159.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|+||+||||| |++|+|.++|.++ |++||+++|++.+....|+.+++. . .
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 799999999999999999 6999999999753 577999999999999899886553 2 2
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+|+. .++++.+|||||||||+|||||+.+|++||.|||||+|||.+.+.++++|++++++
T Consensus 111 ag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRE 190 (339)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH
Confidence 34433 4567899999996 46789999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~ 179 (259)
.|.||++|||.|+.+.++||||.+|++|++++.|+..+++......
T Consensus 191 lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~ 236 (339)
T COG1135 191 LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236 (339)
T ss_pred cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchH
Confidence 9999999999999999999999999999999999999998765443
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.2e-45 Score=318.95 Aligned_cols=174 Identities=21% Similarity=0.371 Sum_probs=154.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccC----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA---- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~---- 60 (259)
+||+++|+|||||||||| +.+|+|.++|+++ .+.++|+||.....+.+|+.++. +|.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 799999999999999999 4899999999864 45799999998888888988754 3321
Q ss_pred ---CCCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 61 ---GIDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 61 ---~~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.++. +.+.++++.+++. .++.+.+|||||||||.|||||+++|++|||||||++||+..+.+++++++++++
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 1122 3466789999985 4778999999999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
++|+|||+++||++.+.++||++++|++|++++.|+++++....
T Consensus 187 ~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e 230 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230 (258)
T ss_pred hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHH
Confidence 88999999999999999999999999999999999999887643
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=311.44 Aligned_cols=164 Identities=26% Similarity=0.346 Sum_probs=145.9
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHH-hccC--CCC---
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMI-FGVA--GID--- 63 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~-~~~~--~~~--- 63 (259)
-+||+++|+|||||||||| +++|+|.++|... ..+++|++|+..++|..|+.+++ +++. +.+
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e 106 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence 3799999999999999999 5899999999865 46799999999999999998765 3332 222
Q ss_pred -HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 64 -PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 64 -~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
.+++.++++.+||. .++++++|||||||||+|||||+.+|++||||||+++||..++..+.+.+.++.++.++||++
T Consensus 107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvll 186 (248)
T COG1116 107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL 186 (248)
T ss_pred HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 24567899999996 578999999999999999999999999999999999999999999999999999988999999
Q ss_pred EeCChhHHhccCCeEEEEeC--CeEEE
Q 024989 141 ATHIFDGLENWPSHIVYVAH--GKLQL 165 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l~~--G~i~~ 165 (259)
||||++|+-.++|||++|.+ |+|..
T Consensus 187 VTHdi~EAv~LsdRivvl~~~P~~i~~ 213 (248)
T COG1116 187 VTHDVDEAVYLADRVVVLSNRPGRIGE 213 (248)
T ss_pred EeCCHHHHHhhhCEEEEecCCCcceee
Confidence 99999999999999999999 55543
No 7
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.8e-43 Score=320.42 Aligned_cols=172 Identities=22% Similarity=0.301 Sum_probs=152.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.+||++|++.+|+.+|+.+++. ..++.+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 699999999999999999 5899999999874 356999999999999999987653 233333
Q ss_pred H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
. +++.++++.+++. .++++++||||||||++||+||+++|++|||||||+||||.++..++++|+++.+ .|+|
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~t 190 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKT 190 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 2 3456788999985 4678999999999999999999999999999999999999999999999999864 5999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
||++||++++++.+||||++|++|++++.|+++++...
T Consensus 191 ill~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 191 ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999998653
No 8
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.8e-43 Score=319.62 Aligned_cols=249 Identities=19% Similarity=0.281 Sum_probs=182.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ..++..
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999 5899999999764 346999999998999999887543 123332
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.+++.++++.+++. .++++.+|||||||||+||+||+++|++|||||||+||||.++..++++|+++++ .|+|
T Consensus 98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~t 176 (302)
T TIGR01188 98 KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVT 176 (302)
T ss_pred HHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 23467899999986 4778999999999999999999999999999999999999999999999999875 5999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHH-HHHHHHhhhchHHHH-H-HHH-HhhCCCCCcccC
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMR-TVESWLRKERDEERK-R-RRE-RKASGLPEFDKQ 213 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~ 213 (259)
||++||+++++.++||++++|++|+++..|+++++.......... ..... ........ . ... ....++......
T Consensus 177 vi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (302)
T TIGR01188 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDI--QSLKVEVSMLIAELGETGLGLLAVTVD 254 (302)
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCceEEEEecCc--hhhhhhhhHHHhhhhhccccceeeeec
Confidence 999999999999999999999999999999999886532111000 00000 00000000 0 000 000111111111
Q ss_pred CCCceee--C---CHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989 214 IHGSRVT--G---DPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST 254 (259)
Q Consensus 214 ~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~ 254 (259)
.+...+. . ...++...+...++.+.++....++|||+|++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~Le~~f~~~ 300 (302)
T TIGR01188 255 SDRIKILVPDGDETVPEIVEAAIRNGIRIRSISTERPSLDDVFLKL 300 (302)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHCCCceEEEEcCCCCHHHHHHHH
Confidence 1112221 1 124566667778999999999999999999864
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.6e-44 Score=306.45 Aligned_cols=173 Identities=18% Similarity=0.247 Sum_probs=154.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHhc-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIFG-V-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~~-~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++++|+++|+-.+|..+|+.+++.. +
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 799999999999999999 5999999999864 4679999999999999999887642 2
Q ss_pred -CCCCHHHHH----HHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 60 -AGIDPQRRA----ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 60 -~~~~~~~~~----~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
...+++.++ .-++.+|+. .+..+.+|||||++|++||||++.+|++|++||||+||||.+...+-++|+++.
T Consensus 113 ~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~ 192 (263)
T COG1127 113 HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192 (263)
T ss_pred hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHH
Confidence 234444433 346778885 467899999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.-|.|++++|||++.+..+|||+++|.+|+|++.|+++++.+.
T Consensus 193 ~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 193 DALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 88899999999999999999999999999999999999999763
No 10
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-43 Score=303.86 Aligned_cols=161 Identities=28% Similarity=0.424 Sum_probs=140.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh---c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF---G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~---~ 58 (259)
+||+++|+|||||||||| +++|.|.++|.++ ++.+||++|+..+.+.+|+.+++. .
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 799999999999999999 5999999999653 356999999999999999988653 1
Q ss_pred cCCCC----HHHHHHHHHHcCCC--cc-ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LS-WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~-~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+.+.. .++..++++.+|+. .. +++.+|||||||||+|||||+++|++||.||||.+||..+.+.+++++++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~ 189 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH
Confidence 22322 23466788999985 33 7799999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~ 164 (259)
++.|+|||++|||...+. .|||++.|++|++.
T Consensus 190 ~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 190 KERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred HhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 888999999999987665 79999999999943
No 11
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=304.57 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=154.3
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCC--CCccCcHHHHHhc---
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVP--IQMDVSAEKMIFG--- 58 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~--~~~~lt~~~~~~~--- 58 (259)
-+||.++|+|+|||||||| +++|+|.++|.+. .+.+.+|+|++. +.|..|+.+.+..
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 3799999999999999999 5999999999643 356889999874 5777888876642
Q ss_pred cCCCC--HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 59 VAGID--PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 59 ~~~~~--~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
..+.+ .+++.++++.+|++ .++++.+|||||+||++|||||+.+|++|||||||++||+..+.+++++|.++.++
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE 190 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh
Confidence 22333 34578899999996 47889999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+|.|+|+||||+..+..+||||++|++|++++.++.+++...
T Consensus 191 ~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 191 RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999999999998765
No 12
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.4e-43 Score=319.73 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=152.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.+||++|++.+++.+|+.+++. ..++.+
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 699999999999999999 5899999999864 356999999998999999887552 233333
Q ss_pred H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
. +++.++++.+++. .++++.+||||||||++||+||+++|++|||||||+||||.++..++++|+++++ .|+|
T Consensus 146 ~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~t 224 (340)
T PRK13536 146 TREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKT 224 (340)
T ss_pred HHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 2 3356788999986 4778999999999999999999999999999999999999999999999999875 5999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
||++||++++++++||||++|++|+++..|+++++...
T Consensus 225 ilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 225 ILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999999999998653
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-43 Score=295.98 Aligned_cols=173 Identities=25% Similarity=0.395 Sum_probs=154.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~ 63 (259)
+||+++|+|+||+||||+ |++|+|+++|.+. +++||.++.+.++|..+|+++++. .+++..
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 799999999999999998 6999999999764 567999998889999999998653 234433
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
..+..++.+.|++. .++++.+||.||||||+|||||+++|++++|||||+|||..+++.+.++++++. +.|++
T Consensus 107 ~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~ 185 (245)
T COG4555 107 RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRA 185 (245)
T ss_pred hhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcE
Confidence 24567889999985 689999999999999999999999999999999999999999999999999875 46999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
||++||.|++++.+||||++|++|.++..|+++++.+..
T Consensus 186 viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 186 VIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred EEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999999999887643
No 14
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-44 Score=324.65 Aligned_cols=177 Identities=25% Similarity=0.372 Sum_probs=160.0
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hccC--C-C
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGVA--G-I 62 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~--~-~ 62 (259)
-+||+++++|||||||||| +++|+|.++|+++ ++.+|+|+|+..+||+||+.+++ |++. + .
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~ 108 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL 108 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC
Confidence 3799999999999999999 5999999999975 57799999999999999998765 5654 1 2
Q ss_pred CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 63 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 63 ~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
.. +++.++++.+++. .++++.+|||||||||+|||||+.+|++||||||.++||...+.++...++++.++.|.
T Consensus 109 ~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~gi 188 (352)
T COG3842 109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI 188 (352)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCC
Confidence 21 3567899999986 47899999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 178 (259)
|.|++|||-+++..++|||++|++|+|...|+++++......
T Consensus 189 T~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 189 TFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred eEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 999999999999999999999999999999999999876543
No 15
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=301.76 Aligned_cols=242 Identities=15% Similarity=0.264 Sum_probs=189.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----cccEEEecccCCCCccCcHHH---HHhccCCCCH--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEK---MIFGVAGIDP-- 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~---~~~~~~~~~~-- 64 (259)
+||+.+++||||+||||. +++|+|.|+|.++ ..+|||.|.+..+|+.+|+.+ ++..+.+.+.
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e 106 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAE 106 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHH
Confidence 799999999999999998 5899999999876 356999999999999999976 3345666654
Q ss_pred --HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 65 --QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 65 --~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
+++..+|+++++. ..+++.+||.|++|++.+..+++|+|+++|||||+|||||.+.+.+.+.+.++.. .|.|||+
T Consensus 107 ~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIif 185 (300)
T COG4152 107 IQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIF 185 (300)
T ss_pred HHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEE
Confidence 3456799999985 5678999999999999999999999999999999999999999999999999865 6999999
Q ss_pred EeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchHHHHHHHHHhhCCCCCcccCCCC-cee
Q 024989 141 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHG-SRV 219 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 219 (259)
|||.|+.++++||++.+|++|+.+..|+.+++......... ++.. +.....+...+++.......++ .++
T Consensus 186 SsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-----~ies----~~s~eeL~~ipgi~~~~~~~~G~~~i 256 (300)
T COG4152 186 SSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-----VIES----DLSLEELANIPGILKITETKDGSWRI 256 (300)
T ss_pred ecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-----EEec----cCchHHHhcCCCceeeeeccCCceEe
Confidence 99999999999999999999999999999999875432210 0100 0000122234455444433344 232
Q ss_pred e---CCHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989 220 T---GDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST 254 (259)
Q Consensus 220 ~---~~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~ 254 (259)
. ...++..-..+..+..+..|....|||+|+|+..
T Consensus 257 ~ie~e~~a~~ifq~~a~~g~i~~Fe~~~PsL~diFi~~ 294 (300)
T COG4152 257 QIENETVAREIFQEVARDGYIQRFELQEPSLHDIFIEK 294 (300)
T ss_pred ecccchHHHHHHHHHhccceeEEEeecCCCHHHHHHHH
Confidence 1 1223333334466677888999999999999864
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-43 Score=306.10 Aligned_cols=171 Identities=20% Similarity=0.379 Sum_probs=148.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCC--CccCcHHHHHh-ccC---C-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPI--QMDVSAEKMIF-GVA---G- 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~--~~~lt~~~~~~-~~~---~- 61 (259)
+||+++|+||||+||||| +++|+|.++|.+. +..||||||...+ ...+|++++.. +.+ +
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 799999999999999999 5899999999753 2469999996643 34578888653 221 1
Q ss_pred ------CCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 62 ------IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 62 ------~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+.+.++|+.+|+. .++++++|||||+|||.|||||+.+|++|||||||+|+|+.++..++++|+++.++
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1235678899999986 57899999999999999999999999999999999999999999999999999876
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|+||+++|||++.+..+||+|+.|+ +++++.|+++++.+.
T Consensus 189 -g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 189 -GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred -CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 9999999999999999999999995 578999999998764
No 17
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.9e-42 Score=312.91 Aligned_cols=243 Identities=20% Similarity=0.297 Sum_probs=182.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++.+|+.+++. ..++.+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999 5899999999764 346999999998999999887653 223333
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.+++.++++.+++. .++++.+||||||||++||+||+++|++|||||||+|||+.+++.+++.|+++. + ++|
T Consensus 107 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~t 184 (301)
T TIGR03522 107 GQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKT 184 (301)
T ss_pred HHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCE
Confidence 24567889999986 477899999999999999999999999999999999999999999999999884 3 799
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchHHHHHHHHHhhCCCCCccc-CCCC
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDK-QIHG 216 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (259)
||++||++++++++|||+++|++|+++..|+.+++........ +..................+..+.. ..+.
T Consensus 185 iii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (301)
T TIGR03522 185 IILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQV-------IEVEFEEQIDLQLFETLEEISSVKNTGGNT 257 (301)
T ss_pred EEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcCCce-------EEEEecCcchhHHHhhccccceeeecCCCe
Confidence 9999999999999999999999999999999999865321110 0000000000000111111111111 1111
Q ss_pred ceee--C---CHHHHHHHHHhCCccccceEecCCChhhhhhcc
Q 024989 217 SRVT--G---DPAQAAVRVMNNGWAAGRLHSTVAGEENFVLST 254 (259)
Q Consensus 217 ~~~~--~---~~~~~~~~l~~~~~~~~~~~~~~~~LEd~f~~~ 254 (259)
..+. . ...++...+...++.+.++....++|||+|+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLe~~~~~~ 300 (301)
T TIGR03522 258 WKLTFETPNDTRPEIFKLAQQKGLKLISLQQNEKNLEQVFREI 300 (301)
T ss_pred EEEEEcCccchHHHHHHHHHHCCCceEEEEeCCCCHHHHHHHh
Confidence 2221 1 134566667778999999999999999999763
No 18
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.8e-42 Score=312.01 Aligned_cols=171 Identities=20% Similarity=0.308 Sum_probs=150.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh--c-cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF--G-VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~--~-~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .++.+
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999 4899999999764 356999999988888889887552 1 22333
Q ss_pred H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
. +++.++++.+++. .++++.+||||||||++||+||+++|++|||||||+|||+.++..++++|+++++ .|.|
T Consensus 109 ~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~t 187 (303)
T TIGR01288 109 TREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKT 187 (303)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 2 2356788889886 3678999999999999999999999999999999999999999999999999875 5999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
||++||+++++..+||++++|++|+++..|+++++..
T Consensus 188 il~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 188 ILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998864
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-43 Score=316.83 Aligned_cols=175 Identities=28% Similarity=0.377 Sum_probs=158.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGID- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~- 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ .+++++|+|+..+||+||+++++ +++ .+.+
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 699999999999999999 5999999999865 46899999999999999998765 444 2322
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+++.++.+.+++. +++++.+|||||||||+|||||+.+|+++|||||+|+||...+..+...|+++.++.|.|+
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~ 187 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTT 187 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 35577889999996 6899999999999999999999999999999999999999999999999999988889999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 177 (259)
|++|||..++..++|||++|++|+|...|++.++.....
T Consensus 188 IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 188 IYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred EEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999999999999999999987543
No 20
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-43 Score=303.98 Aligned_cols=173 Identities=27% Similarity=0.374 Sum_probs=151.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee---------ccccEEEecccCC--CCccCcHHHHHhccC--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE---------WRREVAFAGFEVP--IQMDVSAEKMIFGVA-- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~---------~~~~i~~v~~~~~--~~~~lt~~~~~~~~~-- 60 (259)
+||+++|+|+|||||||| +++|.|.++|.+ +++++||++|++. ++.....++..++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~ 108 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL 108 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc
Confidence 699999999999999999 589999999975 2577999999884 444444456777643
Q ss_pred CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
+.+. +++.++++.+++. .++++.+|||||||||+||.+|+.+|++|||||||+||||.+++.++++++++.++.
T Consensus 109 g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3443 3466788999985 578899999999999999999999999999999999999999999999999998776
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|+|||++|||++++..+|||+++|++|+++.+|++.++.+.
T Consensus 189 ~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 189 GKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 89999999999999999999999999999999999887653
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-43 Score=307.83 Aligned_cols=176 Identities=27% Similarity=0.388 Sum_probs=156.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCe---ec------cccEEEecccCCCCccCcHHHHH-hccCC--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGG---EW------RREVAFAGFEVPIQMDVSAEKMI-FGVAG-- 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~---~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~-- 61 (259)
.||+++++|||||||||| +++|.|.++|. |. .++|||++|+..+|+.||+.+++ |++.-
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 599999999999999999 59999999998 32 35799999999999999998655 56521
Q ss_pred --CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 62 --ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 62 --~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+ +.++.++|+.+.+. .++++.+|||||||||+|||||+.+|++||||||+++||...+.++..+|+++..+
T Consensus 107 ~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~ 186 (345)
T COG1118 107 ERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186 (345)
T ss_pred cCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh
Confidence 11 24567889999886 47899999999999999999999999999999999999999999999999999887
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 178 (259)
.|.|.+++|||.+++.++||||++|++|+|...|+++++......
T Consensus 187 ~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 187 LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 799999999999999999999999999999999999999876543
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-42 Score=297.98 Aligned_cols=173 Identities=23% Similarity=0.369 Sum_probs=152.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----------ccccEEEecccCCCCccCcHHHHH-hcc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----------WRREVAFAGFEVPIQMDVSAEKMI-FGV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----------~~~~i~~v~~~~~~~~~lt~~~~~-~~~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|.+ +++++||++|++++.+.+++.++. .+.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 699999999999999999 489999999964 356799999999999999887543 221
Q ss_pred --------CC-CCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 60 --------AG-IDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 60 --------~~-~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
.+ ++. ..+-++|+++|+. ..++..+|||||||||+|||||+++|+++|.|||+++|||.+.+.+++
T Consensus 109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~ 188 (258)
T COG3638 109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188 (258)
T ss_pred cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHH
Confidence 12 223 2344678888885 357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|++++++.|.|||++.|+++.+.++||||+-|++|+++++|+++++.+.
T Consensus 189 ~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred HHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 99999999999999999999999999999999999999999999997654
No 23
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.7e-42 Score=313.10 Aligned_cols=173 Identities=21% Similarity=0.275 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+++.+|+.+++. ..
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 799999999999999999 5899999999864 346999999999988889877553 22
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++
T Consensus 110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 23332 3456889999985 46789999999999999999999999999999999999999999999999999876
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|.|||++||+++.+.++||+|++|++|++++.|+++++...
T Consensus 190 ~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 699999999999999999999999999999999999998754
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=314.67 Aligned_cols=174 Identities=22% Similarity=0.298 Sum_probs=154.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|+.+|+.+++. +. .+.+.
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK 108 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence 799999999999999999 4899999999865 357999999999999999987653 32 22232
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 188 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTS 188 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 3467889999986 4788999999999999999999999999999999999999999999999999877669999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|++|||++++..+||++++|++|+++..|+++++....
T Consensus 189 i~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 189 LYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred EEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999987643
No 25
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-42 Score=284.61 Aligned_cols=173 Identities=24% Similarity=0.385 Sum_probs=157.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hccC-C--C-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGVA-G--I- 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~-~--~- 62 (259)
.||.++|+|||||||||| |.+|+|.++|.+. .+.+++++|+.++|..+|+.+++ +|+. + .
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~ 103 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN 103 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccC
Confidence 589999999999999999 5899999999864 45689999999999999998766 4543 2 2
Q ss_pred --CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 63 --DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 63 --~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
++++++.++..+|+. .++.+.+|||||||||+|||+|+.+-+||+||||++.|||.-+.++..++.++|.+++.|+
T Consensus 104 a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tl 183 (231)
T COG3840 104 AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183 (231)
T ss_pred HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEE
Confidence 245677889999996 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+|+||..+++.+++|+++++++|+|.+.|+.+++...
T Consensus 184 lmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 184 LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999999999999999988764
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=295.73 Aligned_cols=172 Identities=20% Similarity=0.237 Sum_probs=148.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 799999999999999999 4899999999753 345899999988888889877542 21
Q ss_pred C-CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 A-GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 ~-~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
. +.+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184 (235)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 1 2222 3356788999985 4678899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 185 ~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 185 ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred hcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 458999999999999999999999999999999999887653
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.5e-41 Score=311.77 Aligned_cols=174 Identities=24% Similarity=0.303 Sum_probs=155.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGID- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~- 63 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++. +. .+.+
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 699999999999999999 4899999999865 356999999999999999987653 32 2222
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv 188 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT 188 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 24567899999986 4788999999999999999999999999999999999999999999999999887679999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|++|||++++..+|||+++|++|+++..|+++++.+..
T Consensus 189 i~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 189 IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred EEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999999987643
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.7e-41 Score=311.10 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=153.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|+.+|+.+++. +
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 799999999999999999 5899999999764 346999999999999999987553 2
Q ss_pred cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+++. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++|||.++..+.+.+.++.+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 98 LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177 (363)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 223332 3456789999986 4778999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+|||++|||++++..+||||++|++|+++..|+++++...
T Consensus 178 ~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 178 TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 5699999999999999999999999999999999999998754
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-41 Score=310.72 Aligned_cols=174 Identities=22% Similarity=0.295 Sum_probs=154.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGID- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~- 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+|+.+|+.+++. ++ ++.+
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 699999999999999999 4899999999864 367999999999999999987653 32 2322
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|+|+
T Consensus 111 ~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 190 (351)
T PRK11432 111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITS 190 (351)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 23567789999985 4788999999999999999999999999999999999999999999999999877669999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|++|||++++..+||||++|++|+++..|+++++....
T Consensus 191 i~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred EEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999999987643
No 30
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=300.77 Aligned_cols=177 Identities=19% Similarity=0.284 Sum_probs=158.4
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHH-hcc
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMI-FGV 59 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~-~~~ 59 (259)
-+||++.|+|-|||||||| +++|+|.++|.++ ++++++|+|+..++|+.|+.++. |++
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGL 131 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGL 131 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcce
Confidence 4799999999999999999 6999999999864 35699999999999999987654 554
Q ss_pred --CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 60 --AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 60 --~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
.+.+. ++..++++.+||. .++++++|||||||||.|||||+.+|++||+|||+|+|||--+.++.+-|.++.
T Consensus 132 ev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq 211 (386)
T COG4175 132 EVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211 (386)
T ss_pred eecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHH
Confidence 45553 3456788889986 578999999999999999999999999999999999999999999999999998
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 178 (259)
++..+||+++|||++|+.++.|||.+|++|+|+..|+++|+......
T Consensus 212 ~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAn 258 (386)
T COG4175 212 AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPAN 258 (386)
T ss_pred HHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccH
Confidence 88899999999999999999999999999999999999999876543
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.2e-41 Score=308.68 Aligned_cols=174 Identities=25% Similarity=0.343 Sum_probs=154.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA------ 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~------ 60 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++. +..
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 799999999999999999 4899999999865 356999999999999999987653 321
Q ss_pred CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
+.+ .+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~ 186 (353)
T PRK10851 107 RPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL 186 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 222 23566789999986 478899999999999999999999999999999999999999999999999988766
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|+|+|++|||++++..+||||++|++|+++..|+++++....
T Consensus 187 g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 187 KFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999999999987643
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7.1e-41 Score=309.49 Aligned_cols=174 Identities=21% Similarity=0.272 Sum_probs=154.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCc--eEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSS--GDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~--G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~ 62 (259)
+||+++|+|||||||||| +++ |+|.++|.++ ++.++|++|+..+|+.+|+.+++. ++ .+.
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 699999999999999999 478 9999999864 356999999999999999987653 32 223
Q ss_pred CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-C
Q 024989 63 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-G 135 (259)
Q Consensus 63 ~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~-g 135 (259)
+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++. |
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g 189 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 32 3467889999986 478899999999999999999999999999999999999999999999999987654 8
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
.|+|++|||++++..+||||++|++|+++..|+++++....
T Consensus 190 ~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 190 LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999999999997653
No 33
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-41 Score=291.60 Aligned_cols=171 Identities=23% Similarity=0.358 Sum_probs=147.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-ccC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GVA- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~~- 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 799999999999999999 4899999999753 235899999988888888876542 110
Q ss_pred ---------CC-C---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 61 ---------GI-D---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 61 ---------~~-~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
+. . .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 185 (241)
T cd03256 106 RRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185 (241)
T ss_pred cchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 11 1 23456788889885 467889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+|++++++.|+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 186 ~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 186 LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999987656899999999999999999999999999999999988764
No 34
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-41 Score=286.17 Aligned_cols=172 Identities=22% Similarity=0.245 Sum_probs=146.1
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-h
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-F 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~ 57 (259)
++++++++||||||||||+ -+|+|.++|+++ |+++|+|+|.++.|+ +++++++ +
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVay 110 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAY 110 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHH
Confidence 6789999999999999993 379999999863 678999999999888 7887654 4
Q ss_pred cc--CCCCHH----HHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 58 GV--AGIDPQ----RRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 58 ~~--~~~~~~----~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
+. ++...+ .+++.|+...|. +++....||||||||++|||||+.+|++||||||||+|||.+..++.+
T Consensus 111 G~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe 190 (253)
T COG1117 111 GLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190 (253)
T ss_pred hHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH
Confidence 43 343322 344555555553 345677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 177 (259)
+|.++.+ ..||+++||+|..+.+++|+.+++..|++++.|++++++....
T Consensus 191 Li~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 191 LITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred HHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 9999863 6899999999999999999999999999999999999987544
No 35
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.3e-40 Score=309.03 Aligned_cols=174 Identities=22% Similarity=0.306 Sum_probs=154.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+|+.+|+.+++. ++ .+.+.
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 118 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCH
Confidence 699999999999999999 4899999999875 356999999999999999987653 32 22332
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ti 198 (375)
T PRK09452 119 AEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITF 198 (375)
T ss_pred HHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 3456788999986 4788999999999999999999999999999999999999999999999999887679999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|++|||++++..+||+|++|++|+++..|+++++....
T Consensus 199 I~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 199 VFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999999987643
No 36
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=307.16 Aligned_cols=174 Identities=23% Similarity=0.373 Sum_probs=154.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-ccC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-GVA 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~~~ 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+|+.+|+.+++. +..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 799999999999999999 4899999999753 346999999999999999887653 333
Q ss_pred CCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 61 GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 61 ~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
....+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.||
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 22345678899999986 4778999999999999999999999999999999999999999999999999876568999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|++|||++++..+||++++|++|+++..|+++++....
T Consensus 183 i~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 183 LYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred EEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999999999987654
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-41 Score=287.14 Aligned_cols=165 Identities=27% Similarity=0.376 Sum_probs=142.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~- 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ..+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence 799999999999999999 4899999999764 346999999988888888876542 2 12222
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++.|.||
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 184 (213)
T cd03259 105 AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT 184 (213)
T ss_pred HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 23456788999985 3678899999999999999999999999999999999999999999999999876558999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|++||+++++..+||++++|++|+++..|
T Consensus 185 i~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 185 IYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998654
No 38
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=308.62 Aligned_cols=173 Identities=27% Similarity=0.296 Sum_probs=152.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+|+.+|+.+++. +. .+.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 107 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence 799999999999999999 4899999999864 346999999999999999887653 22 22222
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.|+
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tv 187 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 3467789999986 4778999999999999999999999999999999999999999999999999876568999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|++|||++++..+||++++|++|+++..|+++++...
T Consensus 188 I~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999998754
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-40 Score=289.79 Aligned_cols=172 Identities=27% Similarity=0.354 Sum_probs=148.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCC--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGI-- 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~-- 62 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. .. .+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 799999999999999999 4899999999764 246999999988888888876543 21 111
Q ss_pred --CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 63 --DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 63 --~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
.. +.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|.+++++.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 186 (239)
T cd03296 107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186 (239)
T ss_pred cCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 21 2356788999985 467889999999999999999999999999999999999999999999999987655
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 187 ~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 8999999999999999999999999999999999888754
No 40
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.3e-40 Score=291.29 Aligned_cols=172 Identities=22% Similarity=0.323 Sum_probs=147.9
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-ccC
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GVA 60 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~~ 60 (259)
-+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRL 105 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhccc
Confidence 3799999999999999999 4899999999753 345899999988888888877553 111
Q ss_pred ----------CC-C---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 61 ----------GI-D---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 61 ----------~~-~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+. . .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 185 (243)
T TIGR02315 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM 185 (243)
T ss_pred ccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 1 23456788889885 36788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
++|++++++.|+|||++||+++++.++||++++|++|+++..|+++++.
T Consensus 186 ~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 186 DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 9999987655899999999999999999999999999999999988763
No 41
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=304.84 Aligned_cols=173 Identities=25% Similarity=0.315 Sum_probs=151.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 799999999999999999 4899999999753 346999999988888888877542 2 2
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+||||||||++|||||+++|++|||||||+|||+.++..++++|++++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~ 189 (343)
T PRK11153 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE 189 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 23332 3456789999986 46788999999999999999999999999999999999999999999999998765
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|||++||+++++.++||++++|++|+++..|+++++...
T Consensus 190 ~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 190 LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 689999999999999999999999999999999999988654
No 42
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.6e-40 Score=289.45 Aligned_cols=171 Identities=21% Similarity=0.300 Sum_probs=147.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ +..++|++|++.+++.+|+.+++. .. ..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 799999999999999999 4899999999754 235899999988888889887542 11 11
Q ss_pred C----------C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 62 I----------D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 62 ~----------~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
. . .+.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 184 (236)
T cd03219 105 GSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184 (236)
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1 1 12456788889885 467889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|+++++ .|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 185 ~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 185 LIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999875 68999999999999999999999999999999998887643
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-40 Score=286.12 Aligned_cols=170 Identities=24% Similarity=0.389 Sum_probs=147.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 799999999999999999 4899999999753 346999999988888888876542 1 22222
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.+++++.|+|
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 184 (220)
T cd03265 105 GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 23467889999985 467899999999999999999999999999999999999999999999999987655899
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
||++||+++++..+|||+++|++|+++..++++++
T Consensus 185 vi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 185 ILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999998877653
No 44
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=308.16 Aligned_cols=174 Identities=23% Similarity=0.296 Sum_probs=154.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.+||++|+..+|+.+|+.+++. ++ .+.+.
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 123 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK 123 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence 699999999999999999 4899999999864 457999999999999999987653 32 22222
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus 124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 203 (377)
T PRK11607 124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203 (377)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 3456788999985 4778999999999999999999999999999999999999999999999999877679999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|++|||++++..+|||+++|++|+++..|+++++....
T Consensus 204 i~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred EEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999999987643
No 45
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=286.81 Aligned_cols=168 Identities=25% Similarity=0.335 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHHh-c--cCCCC----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID---- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~---- 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ..+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 108 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEA 108 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHH
Confidence 799999999999999999 4899999999865 457999999988888888876542 2 22222
Q ss_pred HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
.+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 188 (220)
T cd03293 109 RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188 (220)
T ss_pred HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 23466789999985 3678899999999999999999999999999999999999999999999999866568999999
Q ss_pred eCChhHHhccCCeEEEEe--CCeEEEecChh
Q 024989 142 THIFDGLENWPSHIVYVA--HGKLQLAMPMD 170 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l~--~G~i~~~g~~~ 170 (259)
||+++++..+||++++|+ +|+++..++.+
T Consensus 189 sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 189 THDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred ecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999 79999887653
No 46
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-40 Score=286.98 Aligned_cols=171 Identities=25% Similarity=0.336 Sum_probs=148.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 799999999999999999 4899999999864 245899999988888888876542 2 1
Q ss_pred CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.. .+.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~ 189 (233)
T cd03258 110 AGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE 189 (233)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 2222 23456789999985 36788999999999999999999999999999999999999999999999998765
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
.|+|||++||+++++..+||++++|++|+++..++.+++.
T Consensus 190 ~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 190 LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 5899999999999999999999999999999999887764
No 47
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-40 Score=305.78 Aligned_cols=173 Identities=20% Similarity=0.295 Sum_probs=151.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|+.+|+.+++. .
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 799999999999999999 5899999999763 136999999999999999887653 2
Q ss_pred cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|.++++
T Consensus 133 ~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~ 212 (400)
T PRK10070 133 LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212 (400)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 223332 3456789999986 4678999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+|||++||+++++..+||++++|++|+++..|+++++...
T Consensus 213 ~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred HCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 5689999999999999999999999999999999999988653
No 48
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-40 Score=291.82 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=149.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. .
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 799999999999999999 4899999999753 136999999988888888877553 1
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|.++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 208 (269)
T cd03294 129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 22222 23456788999985 4678999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|.|||++||+++++..+||++++|++|+++..|+++++.+.
T Consensus 209 ~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 5589999999999999999999999999999999999887653
No 49
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-40 Score=281.92 Aligned_cols=165 Identities=22% Similarity=0.297 Sum_probs=143.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC---CC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA---GI- 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~---~~- 62 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ... ..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 102 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT 102 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCcc
Confidence 799999999999999999 4899999999764 246999999988888889877653 221 11
Q ss_pred --CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 63 --DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 63 --~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
..+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|.||
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 182 (211)
T cd03298 103 AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV 182 (211)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 123467789999985 4678899999999999999999999999999999999999999999999999876568999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|++||+++++..+||++++|++|+++..|
T Consensus 183 i~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 183 LMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999997643
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=276.85 Aligned_cols=173 Identities=21% Similarity=0.295 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc---cCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG---VAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~---~~~ 61 (259)
+||+|+++||||+||||. +|+|+|.++|.++ +..+||+||+++.|..+|+++++.. +..
T Consensus 29 ~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 29 SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred CCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 699999999999999998 5999999999875 2358999999999999999987642 222
Q ss_pred CC------HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 62 ID------PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 62 ~~------~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+ ..+.+++++.|.+. .+.+..+||||||+|+.|||||+.+|+++|||||++|+||.+..++.++++.+..
T Consensus 109 ~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~- 187 (243)
T COG1137 109 KDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD- 187 (243)
T ss_pred cchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-
Confidence 12 12356899999986 4678889999999999999999999999999999999999999999999998864
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
.|..|+|+.|+..+...+|||.++|.+|++.+.|+++++.+..
T Consensus 188 rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 188 RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 6999999999999999999999999999999999999997653
No 51
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5e-40 Score=307.10 Aligned_cols=172 Identities=23% Similarity=0.343 Sum_probs=151.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA---- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~---- 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +.+
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~ 107 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS 107 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence 799999999999999999 4899999999764 356999999988888899887652 211
Q ss_pred --C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 61 --G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 61 --~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
. .. .+++.++++.+++. .++++.+||||||||++|||||+++|++|||||||+|||+.++..++++|+++++
T Consensus 108 ~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~ 187 (402)
T PRK09536 108 RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187 (402)
T ss_pred cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 1 11 24567889999985 4678999999999999999999999999999999999999999999999999975
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus 188 -~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 188 -DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred -cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 589999999999999999999999999999999999987653
No 52
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-40 Score=293.42 Aligned_cols=172 Identities=25% Similarity=0.345 Sum_probs=147.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .+...|+.+++. + .
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 799999999999999999 4899999999764 245899999863 233467776543 2 1
Q ss_pred CCCCH----HHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 60 AGIDP----QRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
.+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~ 191 (287)
T PRK13637 112 LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH 191 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 23332 3456789999984 467899999999999999999999999999999999999999999999999987
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++.|.|||++||+++++..+||||++|++|++++.|+++++..
T Consensus 192 ~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 192 KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 6569999999999999999999999999999999999998764
No 53
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.5e-40 Score=300.46 Aligned_cols=174 Identities=19% Similarity=0.314 Sum_probs=150.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-cc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-GV 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~~ 59 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++. .+
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 799999999999999999 4899999999864 34699999997 4677888876542 11
Q ss_pred --C--CCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 60 --A--GIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 60 --~--~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
. +.+. +++.++++.+++. .++++.+|||||+|||+||+||+.+|++||+||||+|||+.++..++++|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~ 205 (331)
T PRK15079 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ 205 (331)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 1 2332 3356789999984 367899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
++.++.|.|||+||||++++.++||||++|++|++++.|+.+++....
T Consensus 206 ~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 206 QLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 253 (331)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 987666999999999999999999999999999999999999987643
No 54
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.1e-40 Score=281.30 Aligned_cols=164 Identities=21% Similarity=0.309 Sum_probs=144.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .++.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK 104 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcH
Confidence 799999999999999999 4899999999764 346999999988888889887652 1 123345
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t 183 (208)
T cd03268 105 KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISS 183 (208)
T ss_pred HHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEc
Confidence 5678899999985 4678899999999999999999999999999999999999999999999999875 589999999
Q ss_pred CChhHHhccCCeEEEEeCCeEEEec
Q 024989 143 HIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|+++++..+||++++|++|+++..|
T Consensus 184 H~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 184 HLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999998654
No 55
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=7.4e-40 Score=302.22 Aligned_cols=173 Identities=23% Similarity=0.366 Sum_probs=151.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-ccC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-GVA 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~~~ 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|+.+|+.+++. +..
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 689999999999999999 4899999999754 245899999998999999887653 322
Q ss_pred CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
... .+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.
T Consensus 102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 111 23467889999986 477899999999999999999999999999999999999999999999999987655
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|+|||++||+++++..+||++++|++|+++..|+++++...
T Consensus 182 g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 89999999999999999999999999999999999988754
No 56
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-40 Score=289.73 Aligned_cols=168 Identities=21% Similarity=0.285 Sum_probs=147.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHHh-ccCCCCHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDPQRRAE 69 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~~~~~~ 69 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. .......+++.+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 116 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ 116 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence 799999999999999999 4899999988754 467999999988888888887653 332212345678
Q ss_pred HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 70 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 70 ~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
+++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||++++
T Consensus 117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 89999985 4678899999999999999999999999999999999999999999999999866568999999999999
Q ss_pred HhccCCeEEEEeCCeEEEecChh
Q 024989 148 LENWPSHIVYVAHGKLQLAMPMD 170 (259)
Q Consensus 148 ~~~~~drv~~l~~G~i~~~g~~~ 170 (259)
+..+||++++|++|+++..++.+
T Consensus 197 ~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 197 AVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999988754
No 57
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.2e-40 Score=279.96 Aligned_cols=161 Identities=22% Similarity=0.345 Sum_probs=138.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCC-CccCcHHHHHh-cc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPI-QMDVSAEKMIF-GV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~-~~~lt~~~~~~-~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.. +...|+.+++. .. .+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN 104 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence 799999999999999999 4899999999874 3569999998642 34567776553 21 12223
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s 183 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVIT 183 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 4677899999985 4678899999999999999999999999999999999999999999999999865 589999999
Q ss_pred CChhHHhccCCeEEEEeCCeEE
Q 024989 143 HIFDGLENWPSHIVYVAHGKLQ 164 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~~G~i~ 164 (259)
|+++++..+||++++|++|+++
T Consensus 184 H~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 184 HDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999874
No 58
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.5e-40 Score=284.75 Aligned_cols=160 Identities=22% Similarity=0.365 Sum_probs=138.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 799999999999999999 4899999999753 246899999988888888876542 2 1
Q ss_pred CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 186 (216)
T TIGR00960 108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR- 186 (216)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-
Confidence 2222 23467789999985 4678899999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
.|.|||++||+++++..+||++++|++|++
T Consensus 187 ~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 187 RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 589999999999999999999999999974
No 59
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=298.27 Aligned_cols=174 Identities=17% Similarity=0.297 Sum_probs=150.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~- 58 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++ .+++.+++.+.+. .
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 799999999999999999 4899999999764 34699999987 4677788765442 1
Q ss_pred -cC-CCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 -VA-GID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 -~~-~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
.. +.. .+++.++++.+++. .++++++|||||||||+||+||+.+|++||+||||++||+.++..++++|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~ 199 (327)
T PRK11308 120 LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD 199 (327)
T ss_pred HHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 11 222 23467889999985 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
+.++.|.|||+||||++.+.++||||++|++|++++.|+.+++.+..
T Consensus 200 l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p 246 (327)
T PRK11308 200 LQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246 (327)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 87767999999999999999999999999999999999999987643
No 60
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-40 Score=282.29 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=151.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV---- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~---- 59 (259)
+||+++|+||||+||||| |++|+|.+.|+++ +..++.-+|.+.+|+.+|+.+++. +.
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 799999999999999999 5899999999875 234666789999999999977542 10
Q ss_pred --------CCC--C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 60 --------AGI--D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 60 --------~~~--~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
... . .+++.++|+.++|. .+.+.++||+|||+|+.|||||+.+|++|+||||.+||.+....++
T Consensus 109 ~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l 188 (250)
T COG0411 109 GLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188 (250)
T ss_pred hhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHH
Confidence 011 1 13456789999986 4678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
.+.|+++.++.|.||++|.|||+.+..+||||+||+.|+++++|+|+++.+..
T Consensus 189 ~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 189 AELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241 (250)
T ss_pred HHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCH
Confidence 99999998767899999999999999999999999999999999999997653
No 61
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-39 Score=281.65 Aligned_cols=170 Identities=19% Similarity=0.272 Sum_probs=144.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c--cCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 799999999999999999 4899999999753 245999999988888888876542 2 111
Q ss_pred C--CHHHHHHHHHHc-CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 62 I--DPQRRAELIKVL-DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 62 ~--~~~~~~~~l~~~-~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
. ..+++.++++.+ ++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.
T Consensus 105 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~ 183 (222)
T cd03224 105 RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGV 183 (222)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC
Confidence 1 123345677777 354 4678899999999999999999999999999999999999999999999999865 589
Q ss_pred EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
|||++||+++++..+||++++|++|+++..++.+++.
T Consensus 184 tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 184 TILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999998877654
No 62
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.9e-39 Score=288.85 Aligned_cols=172 Identities=14% Similarity=0.202 Sum_probs=148.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 799999999999999999 4899999999753 245899999988888888876542 21
Q ss_pred C-CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 A-GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 ~-~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
. ..+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 191 (269)
T PRK11831 112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS 191 (269)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 1 1222 2455688999985 4678899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 192 ~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 192 ALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred hcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 558999999999999999999999999999999999988764
No 63
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=281.81 Aligned_cols=172 Identities=26% Similarity=0.416 Sum_probs=149.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC-C--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA-G--ID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~-~--~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ... . ..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 103 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN 103 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence 799999999999999999 4899999999864 246899999988888888877553 221 1 11
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+++.++++.+++. .++++.+||||||||++||+|++.+|++|||||||+|||+.+++.++++|.++.++.|+||
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ti 183 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL 183 (232)
T ss_pred HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 23467789999985 4778999999999999999999999999999999999999999999999999876558999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++||+++++.++||++++|++|+++..|+.+++..
T Consensus 184 ii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 184 LMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999888764
No 64
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.4e-39 Score=282.77 Aligned_cols=171 Identities=23% Similarity=0.332 Sum_probs=147.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c--cCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 799999999999999999 4899999999753 235899999988888888876543 1 122
Q ss_pred CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+++++ .|
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~ 183 (232)
T cd03218 105 LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RG 183 (232)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence 22 12456788889885 4678899999999999999999999999999999999999999999999999875 58
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|||++||+++++..+||++++|++|+++..++.+++..
T Consensus 184 ~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 184 IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999999998887643
No 65
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=284.92 Aligned_cols=172 Identities=23% Similarity=0.328 Sum_probs=148.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c--cCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~ 62 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 799999999999999999 4899999999754 246899999988888888876542 1 2222
Q ss_pred C----HHHHHHHHHHcCCCc----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 63 D----PQRRAELIKVLDIDL----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 63 ~----~~~~~~~l~~~~l~~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
+ .+++.++++.+++.. ++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.
T Consensus 106 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~ 185 (242)
T cd03295 106 PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185 (242)
T ss_pred CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 2 234567899999863 56789999999999999999999999999999999999999999999999987645
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|.|||++||+++++..+||++++|++|+++..++++++..
T Consensus 186 g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 8999999999999999999999999999999998887754
No 66
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.1e-40 Score=281.83 Aligned_cols=160 Identities=28% Similarity=0.415 Sum_probs=138.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. .
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 799999999999999999 4899999999753 245999999988888888876542 2
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (218)
T cd03255 109 LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK 188 (218)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 22222 23466789999986 3678899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
+.|+|||++||+++++. +||++++|++|++
T Consensus 189 ~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 189 EAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred hcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 45899999999999997 9999999999974
No 67
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.1e-39 Score=271.06 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=145.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+|||+-|+||||+||||| +++|+|.++|.++ +++||+|+|+..+.++.|++++.. . .
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 799999999999999999 6999999999864 578999999999999999987653 2 2
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+..+ +++.++|+.+||. .+..+.+|||||||||+||||++++|++||.||||.+|||....++++++.++++
T Consensus 107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr- 185 (223)
T COG2884 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR- 185 (223)
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-
Confidence 34333 4566889999985 3567899999999999999999999999999999999999999999999999986
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
.|+||+++|||.+.+..+-.|++.|++|+++.+.
T Consensus 186 ~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 186 LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 6999999999999999999999999999998754
No 68
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=9.8e-40 Score=280.34 Aligned_cols=165 Identities=25% Similarity=0.343 Sum_probs=142.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++..|+.+++. . ..+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH
Confidence 799999999999999999 4899999999764 235999999988888888876542 1 122222
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+++.|++++++.|.||
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 184 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT 184 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3456788889885 4678899999999999999999999999999999999999999999999999876558999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|++||+++++..+||++++|++|++++.|
T Consensus 185 i~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 185 IYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998764
No 69
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-39 Score=283.53 Aligned_cols=170 Identities=24% Similarity=0.254 Sum_probs=145.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---ccEEEecccCCCCccCcHHHHHh-cc----CCCCH-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMIF-GV----AGIDP- 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~~i~~v~~~~~~~~~lt~~~~~~-~~----~~~~~- 64 (259)
+||+++|+|||||||||| +++|+|.++|.++. ...+|++|++.+++.+|+.+++. .. ...+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 89 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS 89 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence 799999999999999999 48999999998753 23589999988888888877542 11 12222
Q ss_pred ---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 65 ---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 65 ---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|.+++++.|+|||
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii 169 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2356788999985 46788999999999999999999999999999999999999999999999998765689999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
++||+++++..+||++++|++|+++..|+..++
T Consensus 170 ~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999999999999999999988876544
No 70
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.8e-39 Score=300.12 Aligned_cols=173 Identities=20% Similarity=0.267 Sum_probs=151.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCe----ec------------cccEEEecccCCCCccCcHHHHHh
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGG----EW------------RREVAFAGFEVPIQMDVSAEKMIF 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~----~~------------~~~i~~v~~~~~~~~~lt~~~~~~ 57 (259)
+||+++|+|+|||||||| +++|+|.++|+ ++ ++.++|++|++.+++.+|+.+++.
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 799999999999999999 58999999995 21 146999999999999899887653
Q ss_pred -cc--CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 58 -GV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 58 -~~--~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
+. .+.+. +++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+..+..+++.|.
T Consensus 129 ~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~ 208 (382)
T TIGR03415 129 FGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELL 208 (382)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence 22 23332 3456789999986 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++.++.|+|||++|||++++.++||||++|++|+++..|+++++...
T Consensus 209 ~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 209 ELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 98765699999999999999999999999999999999999998654
No 71
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=292.64 Aligned_cols=171 Identities=26% Similarity=0.358 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHH-hc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMI-FG 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~-~~ 58 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++ .++ ..|+.+++ ++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~ 110 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFG 110 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHH
Confidence 799999999999999999 4899999999764 24599999986 344 45776654 32
Q ss_pred c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
. .+.+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 111 PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK 190 (290)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 2 22232 3456789999985 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++++.|.|||++||+++++..+||||++|++|+++..|+++++..
T Consensus 191 l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 876569999999999999999999999999999999999988764
No 72
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=295.93 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=148.5
Q ss_pred CCcEEEEEcCCCCCcccc--------C-----CceEEEEcCeecc------------ccEEEecccC--CCCccCcHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T-----SSGDLSYLGGEWR------------REVAFAGFEV--PIQMDVSAEKM 55 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~-----~~G~I~~~G~~~~------------~~i~~v~~~~--~~~~~lt~~~~ 55 (259)
+||+++|+|+|||||||| . ++|+|.++|+++. +.++|++|++ .+++.+++.+.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~ 111 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQ 111 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHH
Confidence 799999999999999999 1 6899999998641 2599999987 36777887643
Q ss_pred Hh-c---cCCCC----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989 56 IF-G---VAGID----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 56 ~~-~---~~~~~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~ 122 (259)
+. . ..+.. .+++.++++.+++. .++++++|||||||||+||+||+.+|++||+||||+|||+.++..
T Consensus 112 i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~ 191 (326)
T PRK11022 112 IMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQ 191 (326)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Confidence 21 1 11222 23467889999985 256889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
++++|+++.++.|.|+|+||||++.+.++||||++|++|++++.|+.+++....
T Consensus 192 il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p 245 (326)
T PRK11022 192 IIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAP 245 (326)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 999999997767999999999999999999999999999999999999987643
No 73
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=290.22 Aligned_cols=177 Identities=24% Similarity=0.341 Sum_probs=150.5
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec------------cccEEEecccCC--CCccCcHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW------------RREVAFAGFEVP--IQMDVSAEK 54 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~------------~~~i~~v~~~~~--~~~~lt~~~ 54 (259)
+||+++|+|.|||||||+. .+|+|.++|+++ .+.|++++|++. +.|-+++.+
T Consensus 30 ~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~ 109 (316)
T COG0444 30 KGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD 109 (316)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHH
Confidence 7999999999999999982 579999999843 246999999874 566677654
Q ss_pred HH----hccCCC-C----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989 55 MI----FGVAGI-D----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120 (259)
Q Consensus 55 ~~----~~~~~~-~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~ 120 (259)
.+ ..-.+. . .+++.++++.++++ .+.++++|||||+|||.||.||+.+|++||.||||++||...+
T Consensus 110 Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 110 QIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 32 111111 1 23466889999996 2568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179 (259)
Q Consensus 121 ~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~ 179 (259)
.+++++|+++.++.|+|+|+||||+..+.++||||+||..|+|++.|+.+++.......
T Consensus 190 aqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HP 248 (316)
T COG0444 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHP 248 (316)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCCh
Confidence 99999999999888999999999999999999999999999999999999998765443
No 74
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.9e-39 Score=282.01 Aligned_cols=171 Identities=26% Similarity=0.461 Sum_probs=147.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-------ccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-------REVAFAGFEVPIQMDVSAEKMIF-G--VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-------~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|++.+++.+|+.+++. . .++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 799999999999999999 48999999997642 46899999988878888876542 1 12222
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.+.+.++++.+++. .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+++.|++++++.|.|
T Consensus 106 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 185 (236)
T TIGR03864 106 RAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS 185 (236)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 23456788889885 467889999999999999999999999999999999999999999999999987545899
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
||++||+++++.. ||++++|++|+++..++++++..
T Consensus 186 iii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 186 VLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999975 99999999999999999887764
No 75
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=285.28 Aligned_cols=172 Identities=17% Similarity=0.237 Sum_probs=147.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV---- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~---- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ +..++|++|++.+++.+|+.+++. +.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 799999999999999999 4899999999764 124888999988888888876543 11
Q ss_pred --------CC---C--C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989 60 --------AG---I--D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120 (259)
Q Consensus 60 --------~~---~--~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~ 120 (259)
.. . . .+.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 189 (255)
T PRK11300 110 KTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKET 189 (255)
T ss_pred cchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 00 0 0 12356678888885 4778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 121 ~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
..+++.|.+++++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 190 ~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 190 KELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 999999999876458999999999999999999999999999999999887754
No 76
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=295.47 Aligned_cols=174 Identities=17% Similarity=0.275 Sum_probs=147.2
Q ss_pred CCCcEEEEEcCCCCCccccC-------------CceEEEEcCeec------------cccEEEecccCC--CCccCcHHH
Q 024989 2 VEPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW------------RREVAFAGFEVP--IQMDVSAEK 54 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~------------~~~i~~v~~~~~--~~~~lt~~~ 54 (259)
-+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++. +++.+++.+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~ 110 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGR 110 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHH
Confidence 37999999999999999991 689999999764 135999999875 456677765
Q ss_pred HHh-c---c--CC---CC----HHHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Q 024989 55 MIF-G---V--AG---ID----PQRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 116 (259)
Q Consensus 55 ~~~-~---~--~~---~~----~~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD 116 (259)
.+. . . .+ .. .+++.++++.+++.. ++++.+|||||||||+||+||+.+|++|||||||++||
T Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 190 (330)
T PRK15093 111 QLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAME 190 (330)
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCC
Confidence 432 1 1 11 01 234668899999852 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 117 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.++..++++|+++.++.|.|||+||||++++.++||||++|++|+|++.|+.+++...
T Consensus 191 ~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~ 249 (330)
T PRK15093 191 PTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249 (330)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999998765699999999999999999999999999999999999998754
No 77
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-39 Score=281.39 Aligned_cols=172 Identities=19% Similarity=0.212 Sum_probs=147.8
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc--CC
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~ 61 (259)
-+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .++.+++. .. .+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~ 105 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG 105 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC
Confidence 3799999999999999999 4899999999764 346899999987775 57776543 11 12
Q ss_pred CCHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 62 IDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 62 ~~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
....++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++.|.||
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 185 (241)
T PRK14250 106 EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185 (241)
T ss_pred cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 2234567789999985 3577899999999999999999999999999999999999999999999999876458999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++||+++++..+||++++|++|+++..++++++..
T Consensus 186 i~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 186 IWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred EEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999988764
No 78
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-39 Score=287.18 Aligned_cols=172 Identities=21% Similarity=0.334 Sum_probs=148.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC---C
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA---G 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~---~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ... .
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHG 115 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccc
Confidence 799999999999999999 4899999999764 346999999887778888876543 211 1
Q ss_pred ----CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 62 ----ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 62 ----~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|.++++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 195 (265)
T PRK10575 116 ALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 11 23456788999885 4678899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|.|||++||+++++.++||++++|++|+++..|+.+++..
T Consensus 196 ~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 558999999999999999999999999999999999887754
No 79
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.2e-39 Score=282.36 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=147.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------------cccEEEecccCCCCccCcHHHHHh
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------------RREVAFAGFEVPIQMDVSAEKMIF 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------------~~~i~~v~~~~~~~~~lt~~~~~~ 57 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 799999999999999999 4899999998643 245899999988888888876542
Q ss_pred -c---cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 58 -G---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 58 -~---~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
+ ..+... +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 187 (250)
T PRK11264 108 EGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187 (250)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 1 122221 3456788889885 46788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++.+ .|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 188 ~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 188 RQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99865 58999999999999999999999999999999999988754
No 80
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.4e-39 Score=284.19 Aligned_cols=173 Identities=20% Similarity=0.300 Sum_probs=149.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------------------cccEEEecccCCCCccCcH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------------------RREVAFAGFEVPIQMDVSA 52 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------------------~~~i~~v~~~~~~~~~lt~ 52 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++..|+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 799999999999999999 4899999999753 3458999999888888888
Q ss_pred HHHHhc-c---CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989 53 EKMIFG-V---AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 53 ~~~~~~-~---~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~ 122 (259)
.+++.. . .+.. .+.+.++++.+++. .++.+.+|||||+||++||+||+.+|++|||||||+|||+.++..
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~ 184 (252)
T TIGR03005 105 LDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184 (252)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 765531 1 1222 13456788889885 367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+++.|++++++.|.|||++||+++++..+|||+++|++|+++..|+.+++...
T Consensus 185 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999998765589999999999999999999999999999999998887643
No 81
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=289.37 Aligned_cols=169 Identities=23% Similarity=0.297 Sum_probs=144.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .+...|+.+++. +. .+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 799999999999999999 4899999999764 245999999863 344567776543 21 12
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++ .|
T Consensus 110 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g 188 (274)
T PRK13647 110 LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QG 188 (274)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CC
Confidence 222 3456788999985 4678999999999999999999999999999999999999999999999999875 49
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
+|||++||+++++.++|||+++|++|++++.|+++++
T Consensus 189 ~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 189 KTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999998654
No 82
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.1e-39 Score=282.38 Aligned_cols=171 Identities=24% Similarity=0.329 Sum_probs=147.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-cc---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-GV--- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-~~--- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 799999999999999999 4899999999764 235899999988888888876542 21
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 184 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE- 184 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-
Confidence 12222 3456788999885 4678899999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|+|||++||+++++..+||++++|++|+++..|+.+++.+
T Consensus 185 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 185 EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 58999999999999999999999999999999999887754
No 83
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-39 Score=278.11 Aligned_cols=163 Identities=23% Similarity=0.323 Sum_probs=140.5
Q ss_pred cEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-ccCCC
Q 024989 5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-GVAGI 62 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~ 62 (259)
|+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++.+|+.+++. .....
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 9999999999999999 4899999999753 246899999988888888876543 22111
Q ss_pred C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 63 D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 63 ~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|++++++.|.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 1 23466789999985 36788999999999999999999999999999999999999999999999998765589
Q ss_pred EEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|||++||+++++..+||++++|++|+++..|
T Consensus 184 tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 184 PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998754
No 84
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.6e-39 Score=279.43 Aligned_cols=171 Identities=23% Similarity=0.312 Sum_probs=146.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c--cCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~ 61 (259)
+||+++|+|+|||||||| +++|+|.++|.+. ++.++|++|++.+++.+|+.+++. . ..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 799999999999999999 4899999999753 245899999988888888876542 2 122
Q ss_pred CC-HHHHHHHHHHcC-CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 62 ID-PQRRAELIKVLD-ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 62 ~~-~~~~~~~l~~~~-l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.. .+...++++.++ +. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|.+++++.|.|
T Consensus 105 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 184 (230)
T TIGR03410 105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184 (230)
T ss_pred cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence 22 233466777776 33 467899999999999999999999999999999999999999999999999987545899
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
||++||+++++..+||++++|++|+++..|+.+++.
T Consensus 185 ii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 185 ILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999999999988773
No 85
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.8e-39 Score=277.71 Aligned_cols=162 Identities=20% Similarity=0.382 Sum_probs=136.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCC--ccCcHHHHHh-ccC---C---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQ--MDVSAEKMIF-GVA---G--- 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~--~~lt~~~~~~-~~~---~--- 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.++ ..+|+.+++. ... .
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR 103 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence 799999999999999999 4899999999764 56799999987653 3367776543 211 0
Q ss_pred -CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 -ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 -~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|+++++ .|
T Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 182 (213)
T cd03235 104 RLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EG 182 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC
Confidence 11 23466788999885 4678999999999999999999999999999999999999999999999999875 58
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
.|||++||+++++.++||++++|++| +++.
T Consensus 183 ~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 183 MTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred CEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999999999999886 5544
No 86
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=292.51 Aligned_cols=171 Identities=25% Similarity=0.390 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------------------------------cccEEEec
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------------------------------RREVAFAG 41 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------------------------------~~~i~~v~ 41 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.+||++
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 799999999999999999 4899999987532 34589999
Q ss_pred ccCC-CCccCcHHHHH-hcc--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeC
Q 024989 42 FEVP-IQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 110 (259)
Q Consensus 42 ~~~~-~~~~lt~~~~~-~~~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE 110 (259)
|++. .+...|+.+++ ++. .+.+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDE 191 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDE 191 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9752 33345777654 332 23332 3467889999985 367899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 111 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 111 Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
||+|||+.++..++++|+++.+ .|.|||++|||++++.++||||++|++|++++.|+++++..
T Consensus 192 Pt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 192 PTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999874 59999999999999999999999999999999999998765
No 87
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4e-39 Score=277.84 Aligned_cols=168 Identities=23% Similarity=0.324 Sum_probs=145.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++.+|+.+++. . .++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 799999999999999999 4899999999864 346999999988888888876542 1 22222
Q ss_pred H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
. +++.++++.+++. .++++.+||+|||||++||+||+.+|++|||||||+|||+.+++.+++.|+++++ +.|
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~t 184 (220)
T cd03263 107 KSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRS 184 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCE
Confidence 2 3456788989885 3677899999999999999999999999999999999999999999999998853 589
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
||++||+++++..+||++++|++|+++..|+++++
T Consensus 185 ii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 185 IILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999887754
No 88
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-39 Score=280.83 Aligned_cols=165 Identities=22% Similarity=0.327 Sum_probs=141.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|++.+++.+|+.+++. .
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 799999999999999999 48999999997641 45999999988888888876542 1
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 114 IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193 (233)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 12222 23456789999985 3678899999999999999999999999999999999999999999999999865
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
+.|+|||++||+++++..+ |++++|++|+++..++
T Consensus 194 ~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 194 LQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS 228 (233)
T ss_pred hCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence 4689999999999999885 6999999999998775
No 89
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-39 Score=277.52 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=142.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----cccEEEecccCCCCccCcHHHHHhc---cCCCC---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIFG---VAGID--- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~~--- 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++.. ..+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 104 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE 104 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHH
Confidence 799999999999999999 4899999999764 4579999999888888888775421 22222
Q ss_pred -HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 64 -PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 64 -~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
.+.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~ 183 (210)
T cd03269 105 ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVIL 183 (210)
T ss_pred HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 23456788999885 3677899999999999999999999999999999999999999999999999865 4899999
Q ss_pred EeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 141 ATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
+||+++++.++||++++|++|+++..|
T Consensus 184 ~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 184 STHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred ECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999998653
No 90
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.3e-39 Score=279.04 Aligned_cols=164 Identities=28% Similarity=0.395 Sum_probs=142.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~ 63 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ..++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 699999999999999999 4899999999764 356999999988888888877542 122222
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t 188 (218)
T cd03266 110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKC 188 (218)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 23456789999985 4678999999999999999999999999999999999999999999999999865 5899
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
||++||+++++..+||++++|++|+++..|
T Consensus 189 ii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 189 ILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999997643
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-39 Score=287.94 Aligned_cols=172 Identities=19% Similarity=0.302 Sum_probs=147.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .+...|+.+++. +. .+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 799999999999999999 5899999999764 246899999863 566678876553 21 22
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.++ +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++.|
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g 191 (279)
T PRK13650 112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ 191 (279)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 332 3457789999986 4778999999999999999999999999999999999999999999999999876559
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+|||++||+++++. +|||+++|++|+++..|+++++...
T Consensus 192 ~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 192 MTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999995 7999999999999999999887653
No 92
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.3e-39 Score=278.61 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=146.7
Q ss_pred CCCcEEEEEcCCCCCcccc---------C----CceEEEEcCeec------cccEEEecccCC--CCccCcHHHHHh-c-
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------T----SSGDLSYLGGEW------RREVAFAGFEVP--IQMDVSAEKMIF-G- 58 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~----~~G~I~~~G~~~------~~~i~~v~~~~~--~~~~lt~~~~~~-~- 58 (259)
-+||+++|+|||||||||| + ++|+|.++|.++ ++.++|++|++. +++.+|+.+++. .
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 89 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETL 89 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHH
Confidence 3799999999999999999 4 799999999764 246999999874 445677765432 1
Q ss_pred -cCCC-C---HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 59 -VAGI-D---PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 59 -~~~~-~---~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
..+. . .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~ 169 (230)
T TIGR02770 90 RSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169 (230)
T ss_pred HHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence 1121 1 23467889999885 356789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 170 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9876558999999999999999999999999999999999988764
No 93
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-39 Score=285.34 Aligned_cols=172 Identities=20% Similarity=0.314 Sum_probs=148.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-C--C
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-A--G 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~--~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+++.+++. .. . .
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~ 111 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQP 111 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccc
Confidence 799999999999999999 4799999999764 245899999988888888877653 21 1 0
Q ss_pred ----CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 62 ----ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 62 ----~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.. .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|.++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~ 191 (265)
T PRK10253 112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 11 13456788989885 4778999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 192 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 192 EKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 558999999999999999999999999999999999887754
No 94
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-39 Score=280.39 Aligned_cols=171 Identities=21% Similarity=0.284 Sum_probs=147.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc---cC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG---VA- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~---~~- 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++.. ..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 799999999999999999 4899999999753 3469999999888888888765432 11
Q ss_pred CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
..+ ...+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++.+ .
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 186 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S 186 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c
Confidence 122 13456788988885 3678899999999999999999999999999999999999999999999998764 5
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|.|||++||+++++..+||++++|++|+++..++++++..
T Consensus 187 g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 8999999999999999999999999999999999887754
No 95
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.5e-39 Score=293.31 Aligned_cols=174 Identities=20% Similarity=0.257 Sum_probs=148.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CC---ceEEEEcCeecc------------ccEEEecccC--CCCccCcHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TS---SGDLSYLGGEWR------------REVAFAGFEV--PIQMDVSAEKMI 56 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~---~G~I~~~G~~~~------------~~i~~v~~~~--~~~~~lt~~~~~ 56 (259)
+||+++|+|+|||||||| ++ +|+|.++|.++. +.++|++|++ .+++.+++.+.+
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i 120 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQL 120 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHH
Confidence 799999999999999999 23 999999998641 3699999997 467778876543
Q ss_pred h-c--cC-CCCH----HHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 57 F-G--VA-GIDP----QRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 57 ~-~--~~-~~~~----~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
. . .. +.+. +++.++++.+++.. ++++++|||||+|||+||+||+.+|++||+||||++||+.++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i 200 (330)
T PRK09473 121 MEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQI 200 (330)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH
Confidence 2 1 11 2232 34567888888852 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
+++|+++.++.|.|+|+||||++.+.++||||++|++|++++.|+.+++....
T Consensus 201 ~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p 253 (330)
T PRK09473 201 MTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP 253 (330)
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999997766999999999999999999999999999999999999987643
No 96
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.7e-39 Score=275.65 Aligned_cols=166 Identities=27% Similarity=0.415 Sum_probs=143.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC-C-C--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA-G-I-- 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~-~-~-- 62 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ... . .
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~ 102 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN 102 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCcc
Confidence 799999999999999999 4899999999864 346999999988888888876542 221 1 1
Q ss_pred --CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 63 --DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 63 --~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
..+++.++++.+++. .++++.+||||||||++||+||+.+|+++||||||+|||+.++..++++|.++.++.|.||
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ti 182 (213)
T TIGR01277 103 AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTL 182 (213)
T ss_pred HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 123456789999985 4678899999999999999999999999999999999999999999999999876558999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
|++||+++++..+||++++|++|++++.|+
T Consensus 183 i~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 183 LMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999998764
No 97
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.3e-39 Score=276.39 Aligned_cols=161 Identities=20% Similarity=0.314 Sum_probs=138.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------c-ccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------R-REVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~-~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ + +.++|++|++.+++.+|+.+++. .
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 799999999999999999 4899999999753 1 45999999988888888876542 1
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..... .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189 (221)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 11222 23456789999985 4678899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEE
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 164 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~ 164 (259)
+.|.|||++||+++++.. ||++++|++|+++
T Consensus 190 ~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 190 ELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred hcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 558999999999999876 7999999999975
No 98
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.8e-39 Score=283.14 Aligned_cols=171 Identities=22% Similarity=0.332 Sum_probs=148.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------------------cccEEEecccCCCCccCcH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------------------RREVAFAGFEVPIQMDVSA 52 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------------------~~~i~~v~~~~~~~~~lt~ 52 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+++.+++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 799999999999999999 4899999999753 2458999999888888888
Q ss_pred HHHHh-c---cCCCC----HHHHHHHHHHcCCC--c-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989 53 EKMIF-G---VAGID----PQRRAELIKVLDID--L-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 121 (259)
Q Consensus 53 ~~~~~-~---~~~~~----~~~~~~~l~~~~l~--~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~ 121 (259)
.+++. + ..... .+++.++++.+++. . ++++.+||||||||++|||||+.+|++|||||||+|||+.+++
T Consensus 110 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 189 (257)
T PRK10619 110 LENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189 (257)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 76542 1 12222 23456789999985 2 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.++++|+++.+ .|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 190 ~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 190 EVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred HHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhh
Confidence 99999999865 59999999999999999999999999999999999888754
No 99
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.3e-39 Score=280.15 Aligned_cols=170 Identities=15% Similarity=0.209 Sum_probs=146.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc-cC---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG-VA--- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~-~~--- 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++.. ..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 799999999999999999 4899999999754 1359999999888888898765421 11
Q ss_pred -------CC----CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 61 -------GI----DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 61 -------~~----~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
+. ..+++.++++.+++. .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..++++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l 186 (242)
T TIGR03411 107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL 186 (242)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH
Confidence 01 123456788988885 36788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++.+ ++|||++||+++++.++||++++|++|+++..++.+++..
T Consensus 187 ~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 187 KSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99853 6899999999999999999999999999999999887753
No 100
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-39 Score=288.12 Aligned_cols=170 Identities=22% Similarity=0.291 Sum_probs=145.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHH-hc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMI-FG 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~-~~ 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .++. .|+.+++ ++
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~ 109 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFG 109 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhH
Confidence 799999999999999999 5899999999763 24589999976 4444 4776544 32
Q ss_pred c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
. .+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~ 189 (288)
T PRK13643 110 PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189 (288)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 2 22332 3456788889984 3678899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++ .|.|||++|||++++..+||||++|++|+++..|+++++..
T Consensus 190 l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 190 IHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 875 59999999999999999999999999999999999998864
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=282.40 Aligned_cols=172 Identities=25% Similarity=0.358 Sum_probs=147.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc--CCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~ 62 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++.+|+.+++. .. ...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 799999999999999999 4899999999753 245899999988777788877653 21 111
Q ss_pred C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 63 D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 63 ~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
. .+.+.++++.+++. .++.+.+||||||||++||+||+ .+|++|||||||+|||+.++..+.++|+++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1 23456788999885 46789999999999999999999 599999999999999999999999999998
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 187 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 187 AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred HHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 74468999999999999999999999999999999999887754
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-39 Score=280.90 Aligned_cols=170 Identities=25% Similarity=0.353 Sum_probs=147.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------------cccEEEecccCCCCccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------------RREVAFAGFEVPIQMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------------~~~i~~v~~~~~~~~~lt~~~~~~-~ 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. .
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 799999999999999999 4899999999753 245899999988888888877653 1
Q ss_pred ---cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 ---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 ---~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..+.. .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 107 PCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 12222 23456788888885 4678899999999999999999999999999999999999999999999998
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+.+ .|+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 187 ~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 187 LAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 864 5899999999999999999999999999999999887764
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-39 Score=287.87 Aligned_cols=171 Identities=18% Similarity=0.274 Sum_probs=145.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHH-hc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMI-FG 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~-~~ 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .++. .|+.+++ ++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 699999999999999999 4899999999754 34689999986 3443 4676554 22
Q ss_pred c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
. .+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 111 PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 1 12232 3456788899985 2568999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.++.|.|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 191 l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 876569999999999999999999999999999999999988764
No 104
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5e-39 Score=305.04 Aligned_cols=175 Identities=27% Similarity=0.395 Sum_probs=151.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee----------ccccEEEecccC--CCCccCcHHHHHhc---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE----------WRREVAFAGFEV--PIQMDVSAEKMIFG--- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~----------~~~~i~~v~~~~--~~~~~lt~~~~~~~--- 58 (259)
+||+++|+|.|||||||| +++|+|.++|.+ .++++-+++|++ .+++.+|+.+.+..
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 799999999999999999 589999999976 134556666655 57888998876532
Q ss_pred cCC-C--C--HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 59 VAG-I--D--PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 59 ~~~-~--~--~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.+. . . .+++.++++.++++ .++++++||||||||++|||||+.+|++||+||||+.||+..+..+.++|+++
T Consensus 396 ~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l 475 (539)
T COG1123 396 IHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475 (539)
T ss_pred hhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 111 1 1 23467889999996 47899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 177 (259)
.++.|.|.|+||||+..+..+||||++|++|+|++.|+.+++++...
T Consensus 476 q~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~ 522 (539)
T COG1123 476 QEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQ 522 (539)
T ss_pred HHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCC
Confidence 99889999999999999999999999999999999999999887543
No 105
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=286.16 Aligned_cols=171 Identities=23% Similarity=0.329 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCC-CCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVP-IQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~-~~~~lt~~~~~~-~- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .+..+|+.+++. +
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 799999999999999999 4899999999754 235899999863 222567776543 2
Q ss_pred -cCCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 59 -VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 59 -~~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
..+... +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 112 KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 122222 3457789999985 36789999999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++ .|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 192 ~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 192 QK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred Hh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 64 59999999999999999999999999999999999988754
No 106
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.4e-39 Score=277.19 Aligned_cols=159 Identities=23% Similarity=0.330 Sum_probs=137.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 799999999999999999 4899999999753 246899999988888888876542 1 1
Q ss_pred CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~- 185 (214)
T TIGR02673 107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK- 185 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-
Confidence 2222 23456789999985 3667899999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~ 162 (259)
.|+|||++||+++++..+||++++|++|+
T Consensus 186 ~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 186 RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 58999999999999999999999999985
No 107
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-38 Score=275.49 Aligned_cols=168 Identities=24% Similarity=0.404 Sum_probs=147.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----cccEEEecccCCCCccCcHHHHHh---ccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIF---GVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~~~~ 66 (259)
+||+++|+|||||||||| +++|+|.++|.++ .+.++|++|++.+++.+|+.+++. ...+.+.++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~ 104 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR 104 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 799999999999999999 4899999999764 246899999988888888876542 122334556
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+.++++.+++. .++++.+|||||+||++||+|++.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+
T Consensus 105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~ 183 (223)
T TIGR03740 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHI 183 (223)
T ss_pred HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 78899999986 4677899999999999999999999999999999999999999999999999865 58999999999
Q ss_pred hhHHhccCCeEEEEeCCeEEEecChhH
Q 024989 145 FDGLENWPSHIVYVAHGKLQLAMPMDK 171 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~G~i~~~g~~~~ 171 (259)
++++.++|||+++|++|+++..|++.+
T Consensus 184 ~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 184 LSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999988754
No 108
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-39 Score=282.38 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=143.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---ccEEEecccCCCCccCcHHHHHh-c--cCCCC----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMIF-G--VAGID---- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~---- 63 (259)
+||+++|+|||||||||| +++|+|.++|.++. ..++|++|++.+++.+|+.+++. . ..+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR 105 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH
Confidence 799999999999999999 48999999998752 45899999988888888876543 2 12222
Q ss_pred HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
.+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv 185 (255)
T PRK11248 106 LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI 185 (255)
T ss_pred HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 23467789999985 3678899999999999999999999999999999999999999999999999865568999999
Q ss_pred eCChhHHhccCCeEEEEe--CCeEEEecCh
Q 024989 142 THIFDGLENWPSHIVYVA--HGKLQLAMPM 169 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l~--~G~i~~~g~~ 169 (259)
||+++++..+||++++|+ +|+++..++.
T Consensus 186 sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 186 THDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred eCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999998 5999988764
No 109
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-39 Score=279.57 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=145.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. .. ..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 799999999999999999 4899999999753 245999999988888888876553 21 11
Q ss_pred CC--HHHHHHHHHHc-CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 62 ID--PQRRAELIKVL-DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 62 ~~--~~~~~~~l~~~-~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
.. .+.+.++++.+ ++. .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.
T Consensus 110 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~ 188 (237)
T PRK11614 110 RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGM 188 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCC
Confidence 11 12345566766 353 3567899999999999999999999999999999999999999999999999865 589
Q ss_pred EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|||++||+++++.++|||+++|++|+++..|+++++..
T Consensus 189 tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 189 TIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999999999988754
No 110
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=282.66 Aligned_cols=170 Identities=22% Similarity=0.293 Sum_probs=146.7
Q ss_pred CCcEEEEEcCCCCCccccC---------C---ceEEEEcCeec-------------cccEEEecccCCCCccCcHHHHHh
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S---SGDLSYLGGEW-------------RREVAFAGFEVPIQMDVSAEKMIF 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~---~G~I~~~G~~~-------------~~~i~~v~~~~~~~~~lt~~~~~~ 57 (259)
+||+++|+||||||||||. + +|+|.++|.++ ++.++|++|++.+++.+|+.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 108 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVL 108 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHH
Confidence 7999999999999999992 3 59999999754 235899999988888888877653
Q ss_pred -ccC----------C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989 58 -GVA----------G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120 (259)
Q Consensus 58 -~~~----------~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~ 120 (259)
... . .. .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 188 (262)
T PRK09984 109 IGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188 (262)
T ss_pred hhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHH
Confidence 211 0 01 23456789999985 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 121 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 121 ~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
..+++.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++
T Consensus 189 ~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 189 RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 9999999998765689999999999999999999999999999999999886
No 111
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=285.82 Aligned_cols=172 Identities=26% Similarity=0.308 Sum_probs=147.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|+|||||||| +++|+|.++|.+. ++.++|++|++. .+...|+.+++. +.
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 799999999999999999 4899999999764 245899999863 234567776553 21
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~ 190 (283)
T PRK13636 111 LKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190 (283)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 22222 3456788999985 47789999999999999999999999999999999999999999999999998765
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|.|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 191 ~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 191 LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 58999999999999999999999999999999999988765
No 112
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.8e-39 Score=275.17 Aligned_cols=159 Identities=29% Similarity=0.394 Sum_probs=135.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-c--cCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-G--VAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~--~~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .++.+|+.+++. . ..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 799999999999999999 4899999999753 346899999864 355678776542 1 122
Q ss_pred CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.. .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~ 184 (211)
T cd03225 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-G 184 (211)
T ss_pred CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-C
Confidence 22 23456788999985 46789999999999999999999999999999999999999999999999998764 8
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~ 162 (259)
.|||++||+++++..+||++++|++|+
T Consensus 185 ~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 185 KTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999985
No 113
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.8e-39 Score=277.12 Aligned_cols=166 Identities=23% Similarity=0.274 Sum_probs=141.0
Q ss_pred CCcEEEEEcCCCCCcccc-------C-------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL-------T-------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-------~-------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| . ++|+|.++|.++ ++.++|++|++.++ .+|+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 799999999999999998 2 589999999763 24589999998777 788876542
Q ss_pred c--cCCC-C----HHHHHHHHHHcCCCc--ccc--CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989 58 G--VAGI-D----PQRRAELIKVLDIDL--SWR--MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126 (259)
Q Consensus 58 ~--~~~~-~----~~~~~~~l~~~~l~~--~~~--~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~ 126 (259)
. ..+. . .+++.++++.+++.. +++ +.+||||||||++||+||+.+|++|||||||+|||+.++..+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 183 (227)
T cd03260 104 GLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL 183 (227)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 1 1221 1 234567889999852 445 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 171 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 171 (259)
|+++++ . .|||++||+++++..+||++++|++|+++..|++++
T Consensus 184 l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 184 IAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999865 4 899999999999999999999999999999888764
No 114
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-38 Score=276.12 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=139.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|++.+++.+|+.+++. .
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 799999999999999999 48999999997541 35999999988888888876542 1
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 194 (228)
T PRK10584 115 LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194 (228)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 12222 23466789999985 3678899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
+.|.|||++||+++++.. ||++++|++|++++.
T Consensus 195 ~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 195 EHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227 (228)
T ss_pred hcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence 568999999999999865 999999999998753
No 115
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.2e-38 Score=282.99 Aligned_cols=172 Identities=24% Similarity=0.387 Sum_probs=147.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++. .
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 799999999999999999 4899999999753 24599999986 3556678876542 1
Q ss_pred --cCCCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 --VAGID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 --~~~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..... .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++++|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 195 (265)
T TIGR02769 116 RHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195 (265)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11222 23466789999984 3678899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 196 ~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 876558999999999999999999999999999999999988864
No 116
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.8e-38 Score=274.78 Aligned_cols=165 Identities=25% Similarity=0.350 Sum_probs=138.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++. .
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 799999999999999999 4899999999753 24689999987 3556788876542 1
Q ss_pred -cCCC--CHH---H-HHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 59 -VAGI--DPQ---R-RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 59 -~~~~--~~~---~-~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
..+. ..+ . ..++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 189 (228)
T cd03257 110 RIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK 189 (228)
T ss_pred HhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 1111 111 1 13678888884 367889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
+++++.|.|||++||+++++..+||++++|++|+++..|
T Consensus 190 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 190 KLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 987655899999999999999999999999999997653
No 117
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=280.62 Aligned_cols=171 Identities=22% Similarity=0.322 Sum_probs=147.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV----- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~----- 59 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|+..+++.+|+.+++. +.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~ 106 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLS 106 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhh
Confidence 799999999999999999 4899999999763 245999999988777788876542 21
Q ss_pred -CCC-C---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 -AGI-D---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 -~~~-~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.+. . .+++.++++.+++. .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++.+
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~ 186 (255)
T PRK11231 107 LWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186 (255)
T ss_pred hccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 111 1 23456788888885 4778999999999999999999999999999999999999999999999999865
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|+|||++||+++++.++||++++|++|+++..|+.+++..
T Consensus 187 -~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 187 -QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred -CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 58999999999999999999999999999999999887754
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=284.19 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=146.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------ccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------REVAFAGFEVP-IQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|+|||||||| +++|+|.++|.++. +.++|++|++. .+...|+.+++. .. .+
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 799999999999999999 58999999997642 35899999864 233567776543 21 12
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++.++.|
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g 188 (277)
T PRK13652 109 LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG 188 (277)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 332 2356788999985 4678999999999999999999999999999999999999999999999999876558
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|||++||+++++.++|||+++|++|+++..|+++++.+
T Consensus 189 ~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 189 MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999999999999988764
No 119
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.9e-38 Score=274.38 Aligned_cols=162 Identities=23% Similarity=0.293 Sum_probs=139.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 799999999999999999 4899999999753 246899999988778888876542 2 1
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 185 (222)
T PRK10908 107 AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR- 185 (222)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-
Confidence 22222 2356788999885 3678899999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEE
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQL 165 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~ 165 (259)
.|.|||++||+++++..+||++++|++|+++.
T Consensus 186 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 186 VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 48999999999999999999999999999865
No 120
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.2e-38 Score=278.21 Aligned_cols=169 Identities=23% Similarity=0.257 Sum_probs=144.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CC-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TS-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+|||||||| ++ +|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~ 104 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAY 104 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHh
Confidence 799999999999999999 36 99999999764 245999999988877 88776543
Q ss_pred c--cCC-CCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAG-IDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~-~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+ .+. +.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 184 (247)
T TIGR00972 105 GPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE 184 (247)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 222 121 3456788888885 25678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++|+++++ +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 185 ~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 185 ELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999864 4899999999999999999999999999999999888754
No 121
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7e-39 Score=275.04 Aligned_cols=160 Identities=22% Similarity=0.335 Sum_probs=137.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 799999999999999999 4899999999753 245899999988888888876542 1 1
Q ss_pred CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+.+.|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~- 184 (214)
T cd03292 106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK- 184 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-
Confidence 2222 23456788888885 3678899999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
.|+|||++||+++++..+||++++|++|++
T Consensus 185 ~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 185 AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 589999999999999999999999999974
No 122
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.2e-38 Score=281.67 Aligned_cols=173 Identities=16% Similarity=0.284 Sum_probs=146.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC--CCccCcHHHHHh-c--cC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP--IQMDVSAEKMIF-G--VA 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~--~~~~lt~~~~~~-~--~~ 60 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++. +++.+++.+++. . ..
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 799999999999999999 4899999999764 235899999864 455667665442 1 11
Q ss_pred -CCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 61 -GID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 61 -~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
... .+.+.++++.+++. .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 197 (267)
T PRK15112 118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE 197 (267)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 122 13456789999984 3567899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|.|||++||+++++..+||++++|++|+++..|+++++.+.
T Consensus 198 ~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 198 KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred HcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 5589999999999999999999999999999999999887653
No 123
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.5e-38 Score=290.36 Aligned_cols=167 Identities=23% Similarity=0.324 Sum_probs=146.4
Q ss_pred EEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCCH----HH
Q 024989 9 VLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGIDP----QR 66 (259)
Q Consensus 9 i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~~----~~ 66 (259)
|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++. +. .+... ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999 4899999999764 346999999998999999887653 22 22222 34
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.|||++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56789999986 4778999999999999999999999999999999999999999999999999876669999999999
Q ss_pred hhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++++..+||++++|++|+++..|+++++...
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998764
No 124
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=272.72 Aligned_cols=162 Identities=25% Similarity=0.378 Sum_probs=139.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~ 63 (259)
+| +++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ..+.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 46 999999999999999 4899999999754 356999999988888888876542 1 12222
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.+.+.++++.+++. .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++ +.|
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~t 181 (211)
T cd03264 104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRI 181 (211)
T ss_pred HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCE
Confidence 23456788999885 4678899999999999999999999999999999999999999999999999863 589
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
||++||+++++.++|||+++|++|+++..|
T Consensus 182 ii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 182 VILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998654
No 125
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=280.92 Aligned_cols=173 Identities=21% Similarity=0.362 Sum_probs=157.7
Q ss_pred CC-cEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHH-Hhcc
Q 024989 3 EP-EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKM-IFGV 59 (259)
Q Consensus 3 ~~-e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~-~~~~ 59 (259)
+| .+++|.|+|||||||| ++.|.|.++|.-+ ++++|||+|+..+|+++|+..+ .+++
T Consensus 22 p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~ 101 (352)
T COG4148 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM 101 (352)
T ss_pred CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence 44 7899999999999999 5999999999642 4679999999999999999754 4665
Q ss_pred CCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 60 AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 60 ~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.......++++.+.+|+. +++++.+|||||||||+|+|||+..|++|+||||.+.||...+++++-+|.++.++...-
T Consensus 102 ~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IP 181 (352)
T COG4148 102 WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181 (352)
T ss_pred cccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCC
Confidence 544566788999999996 589999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|+++||.++|+.++||+|++|++|++.+.|+.+++...
T Consensus 182 IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 182 ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999999999999999999999999999998764
No 126
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-39 Score=264.79 Aligned_cols=175 Identities=21% Similarity=0.332 Sum_probs=152.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------------------cccEEEecccCCCCccCcH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------------------RREVAFAGFEVPIQMDVSA 52 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------------------~~~i~~v~~~~~~~~~lt~ 52 (259)
+|++++|+|.|||||||+ |+.|.|.++|+.+ +.+.++++|..+++..+|+
T Consensus 31 ~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv 110 (256)
T COG4598 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV 110 (256)
T ss_pred CCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence 699999999999999999 5899999999753 2246889999999999998
Q ss_pred HHHHhc----cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989 53 EKMIFG----VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 53 ~~~~~~----~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~ 122 (259)
.++... .-+.+. ++++.+|..+|+. .+.++..||||||||++|||||+.+|+++++||||++|||+-.-+
T Consensus 111 LeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgE 190 (256)
T COG4598 111 LENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190 (256)
T ss_pred HHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHH
Confidence 765432 113332 4456789999986 356899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178 (259)
Q Consensus 123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 178 (259)
+++.++++++ .|.|.+++||.|.++.+++.+|++|++|.|-+.|+|++++.....
T Consensus 191 VLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S 245 (256)
T COG4598 191 VLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245 (256)
T ss_pred HHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCC
Confidence 9999999986 599999999999999999999999999999999999999876443
No 127
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-38 Score=283.38 Aligned_cols=171 Identities=22% Similarity=0.351 Sum_probs=146.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++. ++...|+.+++. .. .+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 799999999999999999 4899999999864 346899999873 566678876553 21 22
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~ 191 (279)
T PRK13635 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG 191 (279)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 222 3467788888885 4678999999999999999999999999999999999999999999999999876558
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|||++||+++++.. ||++++|++|++++.|+.+++..
T Consensus 192 ~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 192 ITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999975 99999999999999999888754
No 128
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5.4e-38 Score=277.09 Aligned_cols=173 Identities=18% Similarity=0.231 Sum_probs=146.0
Q ss_pred CCcEEEEEcCCCCCcccc---------C----CceEEEEcCeec------cccEEEecccCC--CCccCcHHHHHh---c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T----SSGDLSYLGGEW------RREVAFAGFEVP--IQMDVSAEKMIF---G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~----~~G~I~~~G~~~------~~~i~~v~~~~~--~~~~lt~~~~~~---~ 58 (259)
+||+++|+|+|||||||| + ++|+|.++|.++ ++.++|++|++. +.+.+++.++.. .
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 107 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL 107 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHH
Confidence 799999999999999999 4 789999999864 246999999874 334456554321 1
Q ss_pred cCCC--CHHHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 59 VAGI--DPQRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 59 ~~~~--~~~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
..+. ..+++.++++.+++.. ++.+.+||||||||++|||||+.+|++|||||||+|||+.++..++++|++++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~ 187 (254)
T PRK10418 108 ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187 (254)
T ss_pred HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 1122 2345678899999853 56789999999999999999999999999999999999999999999999987
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++.|.|||++||+++++..+||++++|++|+++..++++++...
T Consensus 188 ~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 188 QKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 65689999999999999999999999999999999999888653
No 129
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=9.3e-39 Score=274.12 Aligned_cols=160 Identities=24% Similarity=0.343 Sum_probs=138.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-c---c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF-G---V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~-~---~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 799999999999999999 4899999999754 245899999988888888876542 1 1
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 183 (213)
T cd03262 105 KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE- 183 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-
Confidence 22222 3456788888885 4678899999999999999999999999999999999999999999999999875
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
.|+|||++||+++++.++||++++|++|++
T Consensus 184 ~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 184 EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 589999999999999999999999999974
No 130
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-38 Score=261.20 Aligned_cols=162 Identities=23% Similarity=0.286 Sum_probs=144.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh---c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF---G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~---~ 58 (259)
.||.++|+|||||||||| +++|+|.+.|+++ .+++|||+|...+.+++|..|+.. .
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 699999999999999999 5899999999864 356999999999999999877653 2
Q ss_pred cCCC----CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGI----DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~----~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
+.+. ......++++.+|+. +.+++.+||||+||||+|||||+..|++|+.||||.+||-.+-+++.+++..+++
T Consensus 115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr 194 (228)
T COG4181 115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194 (228)
T ss_pred hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence 2231 124467899999996 5789999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEE
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 165 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~ 165 (259)
+.|+|.+++|||...+.+ |+|++-|.+|+++.
T Consensus 195 e~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 195 ERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred hcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 999999999999998877 99999999999975
No 131
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4e-38 Score=273.00 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=144.4
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCc--cCcHHHHHh-cc------C
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQM--DVSAEKMIF-GV------A 60 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~--~lt~~~~~~-~~------~ 60 (259)
-+||+++|+|+|||||||| +++|+|.++|++. ++.++|++|++.++. .+|+.+++. +. .
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 3799999999999999999 4899999999864 456999999876533 366766542 21 1
Q ss_pred C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
. .. .+++.++++.+++. .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|+++++ .
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~ 162 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-A 162 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c
Confidence 1 11 23466788999885 3678899999999999999999999999999999999999999999999999865 5
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|.|||++||+++++.++||+++++ +|+++..|+.+++.+
T Consensus 163 ~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 163 GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 999999999999999999999999 899999999888754
No 132
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-38 Score=282.16 Aligned_cols=171 Identities=21% Similarity=0.308 Sum_probs=143.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCC-CccCcHHHHH-hc--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPI-QMDVSAEKMI-FG--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~-~~~lt~~~~~-~~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.. +...++.+++ +. .
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 699999999999999999 4899999999764 2458999998653 2334555433 21 1
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+... +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~- 184 (271)
T PRK13638 106 LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA- 184 (271)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-
Confidence 22222 2345788888885 4678899999999999999999999999999999999999999999999999875
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 185 ~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 185 QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 58999999999999999999999999999999999888754
No 133
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-38 Score=273.55 Aligned_cols=172 Identities=26% Similarity=0.358 Sum_probs=148.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~- 63 (259)
+||.++|+|+|||||||| +++|+|.++|.+. ++.++|++|++.+++.+|+.+++. . ..+.+
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 103 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence 799999999999999999 4899999999764 346999999988888888876543 2 22222
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+.+.++++.+++. .++++.+|||||+||++||+||+.+|++++|||||+|||+.+++.+++.|++++.+.|.||
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 183 (235)
T cd03299 104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183 (235)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 13456788889885 4678999999999999999999999999999999999999999999999999876558999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++||+++++..+||++++|++|+++..++.+++.+
T Consensus 184 li~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 184 LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999999887754
No 134
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.9e-38 Score=278.13 Aligned_cols=171 Identities=23% Similarity=0.337 Sum_probs=146.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV----- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~----- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRS 105 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhh
Confidence 799999999999999999 4899999999764 235899999887777788876542 21
Q ss_pred -CCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 -AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 -~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.... .+++.++++.+++. .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.++|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (256)
T TIGR03873 106 LWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185 (256)
T ss_pred hccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh
Confidence 1111 12456788888885 4678999999999999999999999999999999999999999999999999864
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|.|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus 186 -~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 186 -TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred -cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 58999999999999999999999999999999999887754
No 135
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=276.15 Aligned_cols=170 Identities=21% Similarity=0.215 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~- 58 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 107 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGL 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHH
Confidence 7999999999999999991 489999999754 346999999988788888876552 2
Q ss_pred -cCCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 59 -VAGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 59 -~~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
.... . .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~ 187 (250)
T PRK14247 108 KLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187 (250)
T ss_pred HhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 1111 1 13456788888873 356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|+++. + |.|||++||+++++.++||++++|++|+++..|+++++..
T Consensus 188 ~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 188 LFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 999874 3 7999999999999999999999999999999999988764
No 136
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-38 Score=271.97 Aligned_cols=172 Identities=27% Similarity=0.348 Sum_probs=148.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~- 63 (259)
+||+++|+|+|||||||| +++|+|.++|.+. ++.++|++|++.++..+|+.+++. . ..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~ 104 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK 104 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence 689999999999999999 4899999999764 346899999988888888876542 2 22222
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+++.++++.+++. .++.+.+||+||+||++||+||+.+|+++||||||+|||+.++..+++.|+++.++.|.||
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti 184 (232)
T cd03300 105 AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184 (232)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 23456788999985 4678899999999999999999999999999999999999999999999999876458999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++||+++++.++||++++|++|+++..++.+++..
T Consensus 185 ii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 185 VFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999999998877654
No 137
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.1e-38 Score=279.07 Aligned_cols=173 Identities=24% Similarity=0.321 Sum_probs=144.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----c------------cccEEEecccCC--CCccCcHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----W------------RREVAFAGFEVP--IQMDVSAEK 54 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----~------------~~~i~~v~~~~~--~~~~lt~~~ 54 (259)
+||+++|+|||||||||| +++|+|.++|.+ + ++.++|++|++. +++.+++.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 110 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGG 110 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHH
Confidence 799999999999999999 489999999976 3 235899999864 455566654
Q ss_pred HHh-c---cCCCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 55 MIF-G---VAGID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 55 ~~~-~---~~~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
.+. . ....+ .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus 111 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l 190 (258)
T PRK11701 111 NIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190 (258)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 331 1 11111 23456788999884 3578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus 191 ~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 191 LDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999998765589999999999999999999999999999999999887643
No 138
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.6e-38 Score=274.89 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=142.9
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc---c
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG---V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~---~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.+. +..++|++|++.+++.+|+.+++.. .
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~ 104 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA 104 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence 799999999999999999 2689999999753 1238899999888888888765421 1
Q ss_pred -CC------CC----HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 60 -AG------ID----PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 60 -~~------~~----~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
.. .+ .+++.++++.+++. .++++. +||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 184 (243)
T TIGR01978 105 RRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184 (243)
T ss_pred hhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 10 11 13456788889885 255666 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~~~ 173 (259)
++|+++.+ .|.|||++||+++++..+ ||++++|++|+++..|+++++.
T Consensus 185 ~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 185 EGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999865 589999999999999998 8999999999999999887543
No 139
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-38 Score=285.97 Aligned_cols=170 Identities=20% Similarity=0.249 Sum_probs=144.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------------------cccEEEecccC--CCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------------------RREVAFAGFEV--PIQ 47 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------------------~~~i~~v~~~~--~~~ 47 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++ .++
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 799999999999999999 4899999998542 24589999986 344
Q ss_pred ccCcHHHHH-hcc--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989 48 MDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 117 (259)
Q Consensus 48 ~~lt~~~~~-~~~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~ 117 (259)
. .|+.+++ ++. .+.+. +++.++++.+++. .++.+.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 131 ~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~ 209 (320)
T PRK13631 131 K-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209 (320)
T ss_pred c-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence 4 4776654 332 12222 3456788999985 3678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 118 LARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.++..+++.|.++.+ +|.|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 210 ~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 210 KGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999998865 59999999999999999999999999999999999998765
No 140
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-38 Score=280.82 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=144.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCC-CccCcHHHHHh-c--cC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPI-QMDVSAEKMIF-G--VA 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~-~~~lt~~~~~~-~--~~ 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.. +...|+.+++. . ..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 799999999999999999 4899999999764 2358999998753 55677776542 2 11
Q ss_pred CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
+.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ .
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~ 185 (274)
T PRK13644 107 CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K 185 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C
Confidence 2222 3456788889885 4678999999999999999999999999999999999999999999999999865 5
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|.|||++||+++++. .||++++|++|+++..|+++++..
T Consensus 186 g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 186 GKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999995 599999999999999999988754
No 141
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-38 Score=269.12 Aligned_cols=173 Identities=20% Similarity=0.270 Sum_probs=150.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~ 63 (259)
+||+++|+|+||+||||| +.+|+|.++|+++ +..++||||...+|+.+|++|++. +.+...
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 799999999999999999 3799999999986 345999999999999999998763 322111
Q ss_pred ----HHH-HHHHHHHcC-CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 64 ----PQR-RAELIKVLD-ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 64 ----~~~-~~~~l~~~~-l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.+. .+++.+.|- +. .+++.++|||||||.++|||||+.+|++|+|||||.||-|.-.+++++.|++++++.|
T Consensus 108 ~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g 187 (237)
T COG0410 108 DKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG 187 (237)
T ss_pred ccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC
Confidence 111 556666663 21 3667899999999999999999999999999999999999999999999999987668
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+||+++.++...+.+++||.++|.+|+++.+|+.+++...
T Consensus 188 ~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 188 MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999999998764
No 142
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=9.8e-38 Score=274.71 Aligned_cols=171 Identities=22% Similarity=0.340 Sum_probs=146.2
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc-c-CCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG-V-AGID- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~-~-~~~~- 63 (259)
+||+++|+|||||||||| +.+|+|.++|+++ ++.++|++|++.+++.+|+.+++.. . ...+
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~ 100 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRT 100 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCc
Confidence 799999999999999999 3699999999864 2358999998877777888775532 1 1112
Q ss_pred ---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc-------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 64 ---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK-------PFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 64 ---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~-------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
.+++.++++.+++. .++++.+||||||||++||+||+. +|++|||||||+|||+.++..+.++|++++
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 180 (248)
T PRK03695 101 EAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180 (248)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 23467889999985 367899999999999999999997 679999999999999999999999999986
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+ .|.|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus 181 ~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 181 Q-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred h-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 5 58999999999999999999999999999999998887643
No 143
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-38 Score=281.09 Aligned_cols=171 Identities=25% Similarity=0.333 Sum_probs=145.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .+...|+.+++. +.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~ 106 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN 106 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 799999999999999999 4799999999764 245899999863 333457776542 21
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+... +++.++++.+++. .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..++++|.++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~- 185 (275)
T PRK13639 107 LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK- 185 (275)
T ss_pred cCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-
Confidence 12221 3456788999985 4678999999999999999999999999999999999999999999999999875
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|.|||++||+++++..+||++++|++|++++.|+++++..
T Consensus 186 ~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 186 EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 48999999999999999999999999999999999988754
No 144
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-38 Score=279.55 Aligned_cols=170 Identities=23% Similarity=0.311 Sum_probs=143.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccC--CCCccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEV--PIQMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~--~~~~~lt~~~~~~-~ 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .++. .|+.+++. .
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~ 110 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFG 110 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHH
Confidence 799999999999999999 4899999999753 24589999986 3443 57766542 2
Q ss_pred --cCCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 --VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 --~~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..+.+. +.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (280)
T PRK13649 111 PQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK 190 (280)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 122222 2346788888885 3678899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++ .|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 191 ~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 191 LHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 865 48999999999999999999999999999999999888754
No 145
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=280.64 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=145.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCc---eEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSS---GDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~---G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++ |+|.++|.++ ++.++|++|++. .++..|+.+++. .
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~ 111 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE 111 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHH
Confidence 799999999999999999 355 9999999864 246899999874 566778877553 2
Q ss_pred cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.+. +++.++++.+++. .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191 (282)
T ss_pred hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 122333 3356788999986 4778999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|+|||++||+++++. +|||+++|++|++++.|+++++..
T Consensus 192 ~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 192 KNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred hcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 55899999999999995 799999999999999999988754
No 146
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=310.20 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=150.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~- 58 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++. .
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~ 428 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL 428 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence 799999999999999999 4899999999753 34699999986 4777888876542 1
Q ss_pred -cCCC-CH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 -VAGI-DP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 -~~~~-~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..+. .. +++.++++.+++. .++++++|||||||||+||+||+.+|++|||||||+|||+.++..++++|++
T Consensus 429 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1221 21 3466889999994 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++++.|.|||++|||++++..+||||++|++|++++.|+++++...
T Consensus 509 l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~ 554 (623)
T PRK10261 509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554 (623)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 8776699999999999999999999999999999999999998653
No 147
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=275.09 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=143.7
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++ +|+.+++.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~ 115 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAY 115 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHH
Confidence 7999999999999999992 599999999753 245899999887776 78776542
Q ss_pred c--cCCCCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 58 G--VAGIDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 58 ~--~~~~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
. ..+.+. +++.++++.+++. .++++.+|||||+|||+|||||+.+|++|||||||+|||+.++..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 195 (258)
T PRK14268 116 GPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195 (258)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 2 122222 2356788888872 356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|+++. + |+|||++||+++++.++|||+++|++|+++..|+++++.+
T Consensus 196 ~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 196 LIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999884 3 7999999999999999999999999999999999988764
No 148
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-38 Score=281.82 Aligned_cols=172 Identities=20% Similarity=0.245 Sum_probs=143.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------------cccEEEecccCCC-CccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------------RREVAFAGFEVPI-QMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------------~~~i~~v~~~~~~-~~~lt~~~~~~-~ 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.. +...|+.+++. .
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 699999999999999999 4899999999653 2358999998632 22347765442 2
Q ss_pred c--CCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 V--AGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 ~--~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
. .+... +++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++++|++
T Consensus 116 ~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 195 (289)
T PRK13645 116 PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195 (289)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1 12222 2355788888883 3678899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.++.|+|||++||+++++.++||++++|++|+++..|+++++..
T Consensus 196 ~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 196 LNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 876558999999999999999999999999999999999887754
No 149
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=298.55 Aligned_cols=176 Identities=23% Similarity=0.340 Sum_probs=149.9
Q ss_pred CCcEEEEEcCCCCCccccC-------------CceEEEEcCeec------------cccEEEecccCC--CCccCcHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW------------RREVAFAGFEVP--IQMDVSAEKM 55 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~------------~~~i~~v~~~~~--~~~~lt~~~~ 55 (259)
+||+++|+|.|||||||+. ++|+|.++|.++ .+.|+|++|++. +.|-+|+.+.
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Q 113 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQ 113 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHH
Confidence 7999999999999999992 489999999753 256999999874 4555776543
Q ss_pred Hhc---cCC-CC----HHHHHHHHHHcCCC--c--cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 56 IFG---VAG-ID----PQRRAELIKVLDID--L--SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 56 ~~~---~~~-~~----~~~~~~~l~~~~l~--~--~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
+.. .++ .+ .+++.++++.++++ . ++++++|||||||||.||+||+.+|++||+||||++||+..+.++
T Consensus 114 i~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qI 193 (539)
T COG1123 114 IREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQI 193 (539)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 321 111 11 24456788999985 2 248999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 178 (259)
+++|++++++.|+++|+||||+..+.++||||+||++|++++.|+++++......
T Consensus 194 L~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~h 248 (539)
T COG1123 194 LDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH 248 (539)
T ss_pred HHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCC
Confidence 9999999988999999999999999999999999999999999999999876543
No 150
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-38 Score=275.27 Aligned_cols=170 Identities=25% Similarity=0.272 Sum_probs=144.8
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| + ++|+|.++|.++ ++.++|++|++.+++.+|+.+++.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 108 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAI 108 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHH
Confidence 799999999999999999 2 389999999754 245899999988888888876543
Q ss_pred cc--CCC--CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 58 GV--AGI--DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 58 ~~--~~~--~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
.. .+. .. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 188 (253)
T PRK14267 109 GVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI 188 (253)
T ss_pred HHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 21 121 21 2356778888863 3567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++.|+++. + ++|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 189 ~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 189 EELLFELK-K-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHHHHh-h-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999985 3 6899999999999999999999999999999999988764
No 151
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.5e-37 Score=329.31 Aligned_cols=249 Identities=14% Similarity=0.177 Sum_probs=183.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.+||++|...+++.+|+++++. ..++.+
T Consensus 1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~ 2043 (2272)
T TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043 (2272)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC
Confidence 799999999999999999 5899999999875 356999999999999999987652 233433
Q ss_pred H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
. +.++++++.+++. .++++++|||||||||+||+||+.+|++|||||||+||||.+++.+++.|+++++ .|+|
T Consensus 2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~T 2122 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRA 2122 (2272)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 2 2345788999985 4788999999999999999999999999999999999999999999999999865 4999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhhHHHHHHHHHhhhchH-----HHHHHHHHh-hCCCCCcc
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDE-----ERKRRRERK-ASGLPEFD 211 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~ 211 (259)
||++||++++++.+|||+++|++|++++.|+++++......... +...+...... ......... .++.. ..
T Consensus 2123 IILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~--l~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~-~~ 2199 (2272)
T TIGR01257 2123 VVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYI--VTMKIKSPKDDLLPDLNPVEQFFQGNFPGSV-QR 2199 (2272)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceE--EEEEEcCcchhhhhHHHHHHHHHhhcCccce-ee
Confidence 99999999999999999999999999999999998765331100 00000000000 000000010 11110 00
Q ss_pred cCCCC-ceee---CCHHHHHHHHHhC--CccccceEecCCChhhhhhccC
Q 024989 212 KQIHG-SRVT---GDPAQAAVRVMNN--GWAAGRLHSTVAGEENFVLSTN 255 (259)
Q Consensus 212 ~~~~~-~~~~---~~~~~~~~~l~~~--~~~~~~~~~~~~~LEd~f~~~~ 255 (259)
..... ..+. ....++...+..+ ++.+.++....++|||+|++-.
T Consensus 2200 e~~~~~l~~~i~~~~~~~if~~L~~~k~~l~I~dysvsqtSLE~VFl~l~ 2249 (2272)
T TIGR01257 2200 ERHYNMLQFQVSSSSLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFA 2249 (2272)
T ss_pred ccccceEEEEeCcccHHHHHHHHHhcCCCCCeEEEEcCCCCHHHHHHHHh
Confidence 11111 1111 2345566656544 5888999999999999999753
No 152
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-38 Score=279.76 Aligned_cols=171 Identities=23% Similarity=0.297 Sum_probs=144.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCC-CccCcHHHHH-hcc--C
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPI-QMDVSAEKMI-FGV--A 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~-~~~lt~~~~~-~~~--~ 60 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.. +...++.+++ ++. .
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 699999999999999999 4899999999754 2458999998642 2235666544 221 1
Q ss_pred CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
+.+ .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~ 194 (280)
T PRK13633 115 GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY 194 (280)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 222 23456788999985 467899999999999999999999999999999999999999999999999987656
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|.|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 195 g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 195 GITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999986 99999999999999999988764
No 153
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-38 Score=278.19 Aligned_cols=171 Identities=22% Similarity=0.295 Sum_probs=145.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .++.+|+.+++. .. .+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 799999999999999999 4899999999764 345899999864 566678876543 21 12
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.+. +.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|++++++.+
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~ 193 (271)
T PRK13632 114 VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK 193 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 222 2356788999985 4778999999999999999999999999999999999999999999999999876445
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|||++||+++++. +||++++|++|+++..|+.+++..
T Consensus 194 ~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 194 KTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred cEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999986 799999999999999998887654
No 154
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=274.64 Aligned_cols=170 Identities=22% Similarity=0.248 Sum_probs=143.3
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|+++ ++.++|++|++.+++ .|+.+++.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~ 109 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAY 109 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHH
Confidence 7999999999999999992 589999999754 246999999987776 47766542
Q ss_pred c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+ ..+. . .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 189 (253)
T PRK14242 110 GLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189 (253)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 1221 1 23456778888873 25678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++|+++. + |.|||++||+++++.++||++++|++|+++..|+++++...
T Consensus 190 ~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 190 ELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred HHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999984 3 78999999999999999999999999999999998887643
No 155
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=275.06 Aligned_cols=168 Identities=16% Similarity=0.252 Sum_probs=143.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccC--cHHHHHhccCCCCHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDV--SAEKMIFGVAGIDPQRRAELI 71 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~l--t~~~~~~~~~~~~~~~~~~~l 71 (259)
+||+++|+|||||||||| +++|+|.++|. ..++|++|++.+++.+ ++.+++....+...+++.+++
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 105 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL 105 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc---cCEEEeccccccccccChhHHHHHhccccccHHHHHHHH
Confidence 799999999999999999 48999999873 4699999987766553 455543222223345677889
Q ss_pred HHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 72 KVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 72 ~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
+.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||+++++.
T Consensus 106 ~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 106 KRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVM 185 (251)
T ss_pred HHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 999985 467899999999999999999999999999999999999999999999999987655899999999999999
Q ss_pred ccCCeEEEEeCCeEEEecChhHHHH
Q 024989 150 NWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 150 ~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.+||++++|++ +++..|+++++..
T Consensus 186 ~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 186 AKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred HhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999965 7999999888754
No 156
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.6e-38 Score=301.56 Aligned_cols=171 Identities=20% Similarity=0.316 Sum_probs=148.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--C-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV--A- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~- 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +. .
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 799999999999999999 4899999999764 245999999988888899887653 21 1
Q ss_pred --C-CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 61 --G-IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 61 --~-~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+ .+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 188 (501)
T PRK10762 109 RFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK 188 (501)
T ss_pred ccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 1 122 3456789999985 467899999999999999999999999999999999999999999999999986
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+ .|.|||++|||++++..+||++++|++|+++..++++++..
T Consensus 189 ~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 189 S-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred H-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 5 58999999999999999999999999999999998877643
No 157
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1e-37 Score=300.42 Aligned_cols=171 Identities=20% Similarity=0.300 Sum_probs=149.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-ccCCC-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GVAGI- 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~~~~- 62 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|++.+++.+|+.+++. .....
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 799999999999999999 48999999997641 35899999988888899887653 22211
Q ss_pred -CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 63 -DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 63 -~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
..+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|+|||
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii 194 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIV 194 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence 124567889999985 4678999999999999999999999999999999999999999999999999865 599999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++|||++++..+||++++|++|+++..|+++++..
T Consensus 195 ivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 195 FISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999999999988754
No 158
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.2e-37 Score=272.22 Aligned_cols=165 Identities=26% Similarity=0.433 Sum_probs=139.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEec-ccCCCCccCcHHHHHh---ccCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAG-FEVPIQMDVSAEKMIF---GVAGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~-~~~~~~~~lt~~~~~~---~~~~~ 62 (259)
+||+++|+|+|||||||| +++|+|.++|.+. ++.++|++ |.+.+++.+|+.+++. ...+.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 799999999999999999 4899999999753 34689987 4456677788876542 22232
Q ss_pred CH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 63 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 63 ~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
.. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+.++|.+++++.|.
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 205 (236)
T cd03267 126 PPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 22 2356788888885 46788999999999999999999999999999999999999999999999998765589
Q ss_pred EEEEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|||++||+++++..+||++++|++|++++.|
T Consensus 206 tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 206 TVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999998654
No 159
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=274.23 Aligned_cols=170 Identities=21% Similarity=0.238 Sum_probs=143.2
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.++. +|+.+++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~ 110 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISY 110 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHH
Confidence 7999999999999999992 389999999753 345999999987774 78876542
Q ss_pred cc--CCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+. .+. . .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 190 (254)
T PRK14273 111 GPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190 (254)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH
Confidence 21 121 2 13355677877762 36678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|++++ + +.|||++||+++++..+|||+++|++|+++..|+++++...
T Consensus 191 ~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 191 ELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999984 3 78999999999999999999999999999999999887653
No 160
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=276.34 Aligned_cols=171 Identities=23% Similarity=0.308 Sum_probs=144.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHH-hcc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMI-FGV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~-~~~--~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .++..++.+++ +.. .+
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 799999999999999999 4899999999764 346899999874 55666665433 221 12
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
... +++.++++.+++. .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~ 193 (269)
T PRK13648 114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN 193 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 222 3456788989885 4678899999999999999999999999999999999999999999999999876558
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 194 ~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 194 ITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999986 99999999999999999888754
No 161
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.4e-38 Score=302.15 Aligned_cols=172 Identities=17% Similarity=0.281 Sum_probs=148.1
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec-----------cccEEEecccC--CCCccCcHHHHHh-cc-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW-----------RREVAFAGFEV--PIQMDVSAEKMIF-GV- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~-----------~~~i~~v~~~~--~~~~~lt~~~~~~-~~- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++. +.
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~ 390 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLR 390 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHH
Confidence 799999999999999999 4799999999653 24589999986 3677788876542 21
Q ss_pred -CC--CC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 60 -AG--ID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 60 -~~--~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
++ .+ .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++
T Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 391 VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred hccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence 11 22 13456789999985 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++++.|+|||++|||++++..+||++++|++|++++.|+++++.+
T Consensus 471 ~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 515 (529)
T PRK15134 471 LQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515 (529)
T ss_pred HHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhc
Confidence 876568999999999999999999999999999999999988865
No 162
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=274.31 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=143.8
Q ss_pred CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| . ++|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~ 116 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAF 116 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhh
Confidence 799999999999999999 1 589999999764 346999999987776 67776542
Q ss_pred cc--C-CCCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--A-GIDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~-~~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
.. . +.+. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 196 (260)
T PRK10744 117 GVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIE 196 (260)
T ss_pred hHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHH
Confidence 21 1 2222 3456788888873 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|+++. + +.|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus 197 ~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 197 ELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999984 3 7899999999999999999999999999999999988765
No 163
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=272.73 Aligned_cols=169 Identities=19% Similarity=0.222 Sum_probs=144.1
Q ss_pred CCcEEEEEcCCCCCcccc------------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL------------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL------------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++.+++ .|+.+++. . .
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~ 105 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKL 105 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhh
Confidence 699999999999999999 1699999999864 346999999988776 57776542 2 1
Q ss_pred CCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 60 AGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 60 ~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
.+. . .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l 185 (246)
T PRK14269 106 HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185 (246)
T ss_pred cCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 221 1 12356788998883 35678899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.++. + |+|||++||+++++..+||++++|++|+++..|+.+++..
T Consensus 186 ~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 186 KELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9874 3 8999999999999999999999999999999999988764
No 164
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.8e-37 Score=273.24 Aligned_cols=172 Identities=23% Similarity=0.313 Sum_probs=142.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----c------------cccEEEecccCC--CCccCcHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----W------------RREVAFAGFEVP--IQMDVSAEK 54 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----~------------~~~i~~v~~~~~--~~~~lt~~~ 54 (259)
+||+++|+|||||||||| +++|+|.++|.+ + ++.++|++|++. +++.+++.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 107 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGA 107 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHH
Confidence 799999999999999999 489999999865 2 134899998864 334455544
Q ss_pred HHh----ccCC--C--CHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 55 MIF----GVAG--I--DPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 55 ~~~----~~~~--~--~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
.+. .... . ..+.+.++++.+++. .++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+
T Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l 187 (253)
T TIGR02323 108 NIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187 (253)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 321 1111 1 123466789999984 3568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++|++++++.|.|||++||+++++..+||++++|++|+++..++++++..
T Consensus 188 ~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 188 LDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 (253)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence 999999876568999999999999999999999999999999999888764
No 165
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.2e-37 Score=270.60 Aligned_cols=173 Identities=26% Similarity=0.337 Sum_probs=148.6
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-cc--CCCC
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GV--AGID 63 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~--~~~~ 63 (259)
-+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++..|+.+++. .. .+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~ 103 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP 103 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC
Confidence 3799999999999999999 4899999999764 246899999988888888876553 11 1222
Q ss_pred ----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 ----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
.+.+.++++.+++. .++.+.+||+||+||++||+||+.+|+++||||||+|||+.++..++++|.+++++.|+|
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~t 183 (237)
T TIGR00968 104 KAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT 183 (237)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 23456788888885 367789999999999999999999999999999999999999999999999986544899
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
||++||+++++.++||++++|++|+++..++.+++..
T Consensus 184 vli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999999888764
No 166
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-37 Score=300.51 Aligned_cols=172 Identities=22% Similarity=0.295 Sum_probs=146.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEc-Cee--------------ccccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYL-GGE--------------WRREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~-G~~--------------~~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| +++|+|.++ |.+ .++.++|++|++.+++.+|+.+++.
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 388 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE 388 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHH
Confidence 799999999999999999 489999996 531 1345999999988888888877553
Q ss_pred cc-CCCC----HHHHHHHHHHcCCC-------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 58 GV-AGID----PQRRAELIKVLDID-------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 58 ~~-~~~~----~~~~~~~l~~~~l~-------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
.. .... .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~ 468 (520)
T TIGR03269 389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468 (520)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 0112 13456789999985 257899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|++++++.|.|||++|||++++.++||++++|++|+++..|+++++.+
T Consensus 469 ~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 469 SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999876568999999999999999999999999999999998887654
No 167
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=276.56 Aligned_cols=171 Identities=19% Similarity=0.264 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC-CCccCcHHHHHh-cc--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP-IQMDVSAEKMIF-GV--AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~ 61 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++. .+...|+.+++. +. .+
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG 111 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence 799999999999999999 4899999999764 345899999864 456677776543 21 12
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
... +++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g 191 (277)
T PRK13642 112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ 191 (277)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 222 2356788888885 4678899999999999999999999999999999999999999999999999876559
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|||++||+++++. .||++++|++|+++..|+++++..
T Consensus 192 ~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 192 LTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999997 599999999999999999988764
No 168
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-38 Score=300.64 Aligned_cols=171 Identities=16% Similarity=0.270 Sum_probs=148.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV---- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~---- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +.
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 799999999999999999 4899999999764 235999999988888889877553 21
Q ss_pred --CCC---C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 60 --AGI---D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 60 --~~~---~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
.+. + .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 189 (510)
T PRK09700 110 KVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN 189 (510)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 111 1 13456788999985 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++++ .|+|||++|||++++..+||++++|++|+++..|+++++..
T Consensus 190 ~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 190 QLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9875 59999999999999999999999999999999999887643
No 169
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=299.52 Aligned_cols=171 Identities=26% Similarity=0.376 Sum_probs=148.2
Q ss_pred CCcEEEEEcCCCCCcccc---------C--CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T--SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~--~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|||||||||| + ++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 109 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI 109 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence 699999999999999999 2 699999999754 245999999988888899887653 21
Q ss_pred C--C-CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 60 A--G-IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 60 ~--~-~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
. + .+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 189 (506)
T PRK13549 110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189 (506)
T ss_pred cccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1 1 121 3456789999985 46789999999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++ .|+|||++|||++++..+||++++|++|+++..|+++++..
T Consensus 190 ~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 190 KA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 65 58999999999999999999999999999999999887643
No 170
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=271.97 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=142.8
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~ 108 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVY 108 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHH
Confidence 7999999999999999991 389999999754 345999999987776 67776542
Q ss_pred c--cCCCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+.. .+.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 188 (252)
T PRK14239 109 GLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE 188 (252)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 2 12211 12345677888762 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++|+++. + +.|||++||+++++..+|||+++|++|+++..|+.+++...
T Consensus 189 ~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 189 ETLLGLK-D-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999885 3 68999999999999999999999999999999999888653
No 171
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=272.03 Aligned_cols=170 Identities=22% Similarity=0.239 Sum_probs=143.2
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~ 106 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAY 106 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHH
Confidence 7999999999999999991 379999999764 235999999887776 47766542
Q ss_pred c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+ ..+. . .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 186 (250)
T PRK14245 107 GLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVE 186 (250)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 2 1221 1 13456788888873 25678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+++. + |+|||++||+++++.++|||+++|++|+++..|+++++.+.
T Consensus 187 ~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 187 ELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred HHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999984 3 79999999999999999999999999999999999988653
No 172
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=270.92 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=144.9
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++.+|+.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 108 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIA 108 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHh
Confidence 7999999999999999991 379999999754 345899999988888888876542
Q ss_pred cc--CC-CC----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AG-ID----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~-~~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+. .+ .+ .+++.++++.+++. .+..+.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~ 188 (252)
T PRK14256 109 GYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE 188 (252)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 21 11 12 13356778888873 24568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+++++ +.|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus 189 ~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14256 189 ELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237 (252)
T ss_pred HHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999853 58999999999999999999999999999999999887653
No 173
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.2e-37 Score=268.98 Aligned_cols=169 Identities=24% Similarity=0.344 Sum_probs=137.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc-cCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG-VAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~-~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++ .|+.+++.. ......
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~ 105 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSM 105 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCH
Confidence 799999999999999999 4899999999753 346999999876664 577766532 222222
Q ss_pred HHHH---------HHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRA---------ELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~---------~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
.... ++++.+ ++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 185 (237)
T cd03252 106 ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC 185 (237)
T ss_pred HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 2222 233333 222 245789999999999999999999999999999999999999999999999885
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+ |.|||++||+++++. .||++++|++|+++..|+++++...
T Consensus 186 -~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 186 -A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred -C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 4 899999999999996 5999999999999999998887653
No 174
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=274.74 Aligned_cols=172 Identities=21% Similarity=0.258 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CC--------ceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TS--------SGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~--------~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~ 57 (259)
+||+++|+|||||||||| ++ +|+|.++|.++ ++.++|++|++..+..+|+.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 105 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVL 105 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHh
Confidence 799999999999999999 35 89999999764 234799999876656678876552
Q ss_pred -ccC------C-CC---HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCC
Q 024989 58 -GVA------G-ID---PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDL 115 (259)
Q Consensus 58 -~~~------~-~~---~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gL 115 (259)
... + .. .+.+.++++.+++. .++++.+|||||||||+||+||+ .+|++|||||||+||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~L 185 (272)
T PRK13547 106 LGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAAL 185 (272)
T ss_pred hcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccC
Confidence 211 1 11 13456788889885 46788999999999999999999 599999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 116 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 116 D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|+.++..++++|+++.++.|+|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 186 D~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 186 DLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999876558999999999999999999999999999999999887754
No 175
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=270.38 Aligned_cols=170 Identities=20% Similarity=0.203 Sum_probs=143.9
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+|||||||| + ++|+|.++|.++ ++.++|++|++.+++ +|+.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~ 107 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAY 107 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHh
Confidence 799999999999999999 2 579999999764 245899999987776 78776543
Q ss_pred c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. .. +++.++++.+++. .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 187 (251)
T PRK14270 108 GPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187 (251)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 1222 11 2345788888763 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+++.+ +.|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus 188 ~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 188 DLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 99999853 58999999999999999999999999999999999987643
No 176
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=272.87 Aligned_cols=170 Identities=17% Similarity=0.221 Sum_probs=144.1
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++.+|+.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 108 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVA 108 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHH
Confidence 7999999999999999991 499999999754 245999999988888888876542
Q ss_pred c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. .. +.+.++++.+++. .++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 188 (258)
T PRK14241 109 GLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE 188 (258)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 1 1121 21 2346678888872 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe------CCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~------~G~i~~~g~~~~~~~ 174 (259)
+.|++++ + ++|||++||+++++.++||++++|+ +|++++.|+++++..
T Consensus 189 ~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 189 DLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred HHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 9999984 3 6899999999999999999999997 799999999988754
No 177
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.4e-37 Score=298.99 Aligned_cols=172 Identities=23% Similarity=0.336 Sum_probs=145.9
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec-----------c-ccEEEecccCC--CCccCcHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW-----------R-REVAFAGFEVP--IQMDVSAEK 54 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~-----------~-~~i~~v~~~~~--~~~~lt~~~ 54 (259)
+||+++|+|||||||||| + ++|+|.++|.++ + +.++|++|++. +++.+++.+
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~ 113 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEK 113 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHH
Confidence 699999999999999999 2 589999999753 1 35999999864 455567766
Q ss_pred HHhc---c-CCCC----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989 55 MIFG---V-AGID----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 121 (259)
Q Consensus 55 ~~~~---~-~~~~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~ 121 (259)
++.. . .+.+ .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~ 193 (529)
T PRK15134 114 QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193 (529)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHH
Confidence 4421 1 1222 23467789999985 26689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.++++|++++++.|+|||+||||++++..+||||++|++|+++..|+++++..
T Consensus 194 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 246 (529)
T PRK15134 194 QILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999876558999999999999999999999999999999999988754
No 178
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-37 Score=273.29 Aligned_cols=169 Identities=19% Similarity=0.211 Sum_probs=142.9
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| + ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~ 122 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAY 122 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHH
Confidence 799999999999999999 2 689999999754 2458999998877764 7766542
Q ss_pred cc--CCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 58 GV--AGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 58 ~~--~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
+. .+. . .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14235 123 GPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202 (267)
T ss_pred HHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 21 121 1 13356788888883 2457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.+.|++++ + +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 203 ~~~L~~l~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14235 203 EELIDELR-Q-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFT 251 (267)
T ss_pred HHHHHHHh-c-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999885 3 6899999999999999999999999999999999888764
No 179
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=295.90 Aligned_cols=170 Identities=21% Similarity=0.348 Sum_probs=147.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc---C
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV---A 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~---~ 60 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++.+++.+|+.+++. +. .
T Consensus 23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 102 (491)
T PRK10982 23 PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK 102 (491)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence 799999999999999999 4899999999764 246999999988888889877543 21 1
Q ss_pred C--CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 61 G--IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 61 ~--~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
+ .+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 182 (491)
T PRK10982 103 GMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182 (491)
T ss_pred ccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 1 121 2456788889885 4678999999999999999999999999999999999999999999999999865
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
.|.|||++||+++++..+||++++|++|+++..++++++.
T Consensus 183 -~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 183 -RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred -CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 5999999999999999999999999999999999987764
No 180
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=305.87 Aligned_cols=172 Identities=20% Similarity=0.249 Sum_probs=147.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------------------cccEEEecccC--CCCcc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------------------RREVAFAGFEV--PIQMD 49 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------------------~~~i~~v~~~~--~~~~~ 49 (259)
+||+++|+|+|||||||| +++|+|.++|..+ .+.++|++|++ .+++.
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~ 120 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPV 120 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCC
Confidence 799999999999999999 4799999987421 13599999987 56777
Q ss_pred CcHHHHHh-c--c-CCCCH----HHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Q 024989 50 VSAEKMIF-G--V-AGIDP----QRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 116 (259)
Q Consensus 50 lt~~~~~~-~--~-~~~~~----~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD 116 (259)
+|+.+++. + . .+.+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||
T Consensus 121 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD 200 (623)
T PRK10261 121 FTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200 (623)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccC
Confidence 88876542 2 1 12222 3466789999984 367899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 117 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.++..++++|++++++.|+|||+||||++++.++||||++|++|+++..|+++++..
T Consensus 201 ~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 201 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence 9999999999999976569999999999999999999999999999999999988764
No 181
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.1e-37 Score=274.47 Aligned_cols=172 Identities=26% Similarity=0.423 Sum_probs=146.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCC--CCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVP--IQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~--~~~~lt~~~~~~-~- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. +++..++.+++. .
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~ 116 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL 116 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence 799999999999999999 4899999999753 346999999863 455677766542 1
Q ss_pred --cCCCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 --VAGID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 --~~~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
....+ ...+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|++
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 196 (268)
T PRK10419 117 RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196 (268)
T ss_pred HhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 11222 13467889999884 3678899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++++.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 197 ~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 197 LQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 876568999999999999999999999999999999999888753
No 182
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-37 Score=271.35 Aligned_cols=170 Identities=21% Similarity=0.261 Sum_probs=142.9
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~ 115 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAY 115 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHh
Confidence 7999999999999999991 489999999764 2458999999877765 7766542
Q ss_pred c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. .. +++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 195 (259)
T PRK14274 116 GPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195 (259)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 2 1221 21 2345678888773 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|.++. + +.|||++||+++++.++|||+++|++|+++..|+++++...
T Consensus 196 ~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 196 ELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 9999984 3 78999999999999999999999999999999999987653
No 183
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.3e-37 Score=270.08 Aligned_cols=167 Identities=21% Similarity=0.298 Sum_probs=139.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-C--CCCHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-A--GIDPQRRAEL 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~--~~~~~~~~~~ 70 (259)
+||+++|+|||||||||| +++|+|.++|. .++|++|++..+..+|+.+++... . ........++
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----TVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----eEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 699999999999999999 48999999985 589999987766778888765321 1 1122345678
Q ss_pred HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
++.+++. .++++.+|||||||||+||+||+.+|+++||||||++||+.++..+.++|++++++.|+|||++||+++++
T Consensus 100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 8889885 46789999999999999999999999999999999999999999999999998766689999999999999
Q ss_pred hccCCeEEEEeCCeEE--EecChhHHH
Q 024989 149 ENWPSHIVYVAHGKLQ--LAMPMDKVK 173 (259)
Q Consensus 149 ~~~~drv~~l~~G~i~--~~g~~~~~~ 173 (259)
..+||++++|+++..+ ..+++.++.
T Consensus 180 ~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 180 DYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999765433 344555543
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=272.47 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=142.0
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~ 116 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAF 116 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhh
Confidence 7999999999999999992 689999999753 2459999999877764 7776553
Q ss_pred c--cCCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989 58 G--VAGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126 (259)
Q Consensus 58 ~--~~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~ 126 (259)
. ..+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 196 (269)
T PRK14259 117 GARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET 196 (269)
T ss_pred hhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 2 12222 23455678888762 3567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC-----------CeEEEecChhHHHH
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAH-----------GKLQLAMPMDKVKE 174 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~-----------G~i~~~g~~~~~~~ 174 (259)
|++++ + +.|||++||+++++..+||++++|++ |++++.|+++++..
T Consensus 197 l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 197 MHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred HHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 99884 3 68999999999999999999999996 67899999988865
No 185
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-37 Score=268.47 Aligned_cols=169 Identities=20% Similarity=0.214 Sum_probs=142.1
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++ +|+.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~ 106 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAY 106 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHH
Confidence 7999999999999999991 489999999753 345899999887776 77776542
Q ss_pred c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. . .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 186 (250)
T PRK14240 107 GPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186 (250)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 2 1221 1 23345677777762 25678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|+++. + +.|||++||+++++.++||++++|++|+++..++.+++..
T Consensus 187 ~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 187 ELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999884 3 7899999999999999999999999999999999888754
No 186
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-37 Score=272.09 Aligned_cols=170 Identities=22% Similarity=0.217 Sum_probs=141.9
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~ 124 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITH 124 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHH
Confidence 7999999999999999981 589999999754 2458999998877764 7766442
Q ss_pred c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. . .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 204 (268)
T PRK14248 125 ALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE 204 (268)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHH
Confidence 2 1121 1 12345677777763 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++|++++ + +.|||++||+++++..+|||+++|++|+++..|+++++...
T Consensus 205 ~~l~~~~-~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 205 ELITELK-E-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHHHh-c-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999985 3 68999999999999999999999999999999999887653
No 187
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-37 Score=270.94 Aligned_cols=172 Identities=18% Similarity=0.247 Sum_probs=144.7
Q ss_pred CCcEEEEEcCCCCCccccC---------C-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||+ + +|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~ 110 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAY 110 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHH
Confidence 7999999999999999992 2 79999999753 235899999877776 78776542
Q ss_pred c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. + .+.+.++++.+++. .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~ 190 (261)
T PRK14258 111 GVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE 190 (261)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 1 1121 1 13356788888863 25678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC-----CeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH-----GKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~-----G~i~~~g~~~~~~~~ 175 (259)
+.|++++++.|.|||++||+++++.++|||+++|++ |+++..|+++++.+.
T Consensus 191 ~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 191 SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence 999998654589999999999999999999999999 999999999998653
No 188
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-37 Score=269.95 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=142.2
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-h
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-F 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~ 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++. ++.+++ +
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~ 108 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAY 108 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHH
Confidence 7999999999999999991 389999999753 3458999998877765 666543 2
Q ss_pred c--cCCC--C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 58 G--VAGI--D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 58 ~--~~~~--~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
. ..+. . .+.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 188 (251)
T PRK14244 109 GPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188 (251)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 2 1121 1 12345788888874 2457889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++.|+++. + |+|||++||+++++.++||++++|++|+++..|+++++...
T Consensus 189 ~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 189 ENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999874 3 89999999999999999999999999999999998887643
No 189
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8.9e-37 Score=266.35 Aligned_cols=168 Identities=23% Similarity=0.295 Sum_probs=136.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. .......
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~ 106 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATD 106 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCCH
Confidence 799999999999999999 4899999999764 245999999877665 57776553 2211122
Q ss_pred HHHHHHHHH---------c--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKV---------L--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~---------~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+...+.++. + ++. .+.++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 186 (238)
T cd03249 107 EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM 186 (238)
T ss_pred HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 222222222 2 221 245678999999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|.|||++||+++++. +||++++|++|+++..++.+++..
T Consensus 187 --~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 187 --KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred --CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence 4899999999999997 799999999999999998877654
No 190
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-37 Score=279.34 Aligned_cols=176 Identities=22% Similarity=0.349 Sum_probs=154.2
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec-----------cccEEEecccCC--CCccCcHHHHHh-cc-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW-----------RREVAFAGFEVP--IQMDVSAEKMIF-GV- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~-----------~~~i~~v~~~~~--~~~~lt~~~~~~-~~- 59 (259)
+||.++|+|.|||||||| .++|.|.+.|.++ ++++-.|+|++. +.|.+|+.+++. ++
T Consensus 312 ~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred CCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 699999999999999999 4789999999864 456778888874 678899888763 22
Q ss_pred -C--CCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 60 -A--GIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 60 -~--~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
+ ..+. +++.++++.+|++ .+++++++|||||||++||||++.+|++++||||||+||...+.++.++|++
T Consensus 392 vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~ 471 (534)
T COG4172 392 VHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471 (534)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHH
Confidence 1 2222 3466788899997 4688999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 178 (259)
+.++.|.+-++||||+..+..+||+|+||++|+|++.|+.+++++....
T Consensus 472 LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~ 520 (534)
T COG4172 472 LQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH 520 (534)
T ss_pred HHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999876543
No 191
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=295.13 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCC---CCccCcHHHHHh-ccC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVP---IQMDVSAEKMIF-GVA 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~---~~~~lt~~~~~~-~~~ 60 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++. +++.+|+.+++. +..
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~ 357 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISAR 357 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccc
Confidence 799999999999999999 4899999999754 245899999863 677788876542 211
Q ss_pred ------C--CC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 61 ------G--ID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 61 ------~--~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
+ .. .+.+.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 437 (501)
T PRK11288 358 RHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN 437 (501)
T ss_pred hhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 1 01 12456789999983 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+|.++++ .|.|||++|||++++..+||++++|++|++++.|++++..
T Consensus 438 ~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 438 VIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999875 5999999999999999999999999999999999887654
No 192
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-37 Score=268.60 Aligned_cols=169 Identities=24% Similarity=0.298 Sum_probs=142.5
Q ss_pred CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| . ++|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~ 106 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAF 106 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHH
Confidence 699999999999999999 1 689999999653 346999999887776 78776542
Q ss_pred c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. .. +.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~ 186 (250)
T PRK14262 107 GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIE 186 (250)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH
Confidence 2 1221 11 2345677888773 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++|.++. + ++|||++||+++++..+||++++|++|+++..|+++++.+
T Consensus 187 ~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 187 KLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999985 3 6899999999999999999999999999999999988764
No 193
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.3e-37 Score=264.62 Aligned_cols=160 Identities=24% Similarity=0.301 Sum_probs=133.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc-cCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG-VAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~-~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++.. ......
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~ 107 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPLADD 107 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCCCCH
Confidence 799999999999999999 4899999999754 246899999887765 577766532 222233
Q ss_pred HHHHHHHHHcCCC--ccc-----------cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID--LSW-----------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~-----------~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+.+.++++.+++. .++ .+.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++
T Consensus 108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 4556677777763 122 346999999999999999999999999999999999999999999999986
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
+ +.|||++||+++++ ++||++++|++|+++..
T Consensus 188 ~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 188 G--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred C--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 4 38999999999987 69999999999999764
No 194
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=268.11 Aligned_cols=169 Identities=26% Similarity=0.320 Sum_probs=142.6
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.++. .|+.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~ 107 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAY 107 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHH
Confidence 7999999999999999982 499999999753 345899999887775 67776543
Q ss_pred cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
.. .+. .. +.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~ 187 (251)
T PRK14251 108 GLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187 (251)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHH
Confidence 21 221 11 2356678888873 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|+++. + +.|||++||+++++..+||++++|++|+++..++.+++..
T Consensus 188 ~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 188 ETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999874 3 6899999999999999999999999999999999988754
No 195
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=264.64 Aligned_cols=168 Identities=27% Similarity=0.329 Sum_probs=137.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. .......
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~ 105 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATR 105 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCH
Confidence 799999999999999999 4899999999753 346999999877765 57776553 2222222
Q ss_pred HHH---------HHHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRR---------AELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~---------~~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
... .++++.+ ++. .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 185 (234)
T cd03251 106 EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM 185 (234)
T ss_pred HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 222 2334444 332 356788999999999999999999999999999999999999999999999885
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 186 -~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 186 -K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred -C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 3 8999999999999986 99999999999999998887754
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=295.59 Aligned_cols=166 Identities=17% Similarity=0.272 Sum_probs=142.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEeccc---CCCCccCcHHHHHh-ccC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFE---VPIQMDVSAEKMIF-GVA 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~---~~~~~~lt~~~~~~-~~~ 60 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+ ..+++.+|+.+++. ...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 367 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRS 367 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccc
Confidence 699999999999999999 4899999999753 2458999997 35777888877543 210
Q ss_pred ----------CC-CH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989 61 ----------GI-DP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 61 ----------~~-~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~ 122 (259)
+. .. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 447 (510)
T PRK09700 368 LKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447 (510)
T ss_pred cccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHH
Confidence 11 11 2356789999984 367899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecCh
Q 024989 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 169 (259)
Q Consensus 123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~ 169 (259)
++++|+++++ .|.|||++|||++++..+|||+++|++|+++..++.
T Consensus 448 l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 448 IYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999875 599999999999999999999999999999988766
No 197
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-37 Score=271.98 Aligned_cols=170 Identities=22% Similarity=0.325 Sum_probs=140.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-----ccEEEecccCCCCc--cCcHHHHHh-cc------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-----REVAFAGFEVPIQM--DVSAEKMIF-GV------ 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-----~~i~~v~~~~~~~~--~lt~~~~~~-~~------ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|++.++. ..++.+++. +.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~ 111 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGW 111 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccc
Confidence 799999999999999999 48999999998642 35999999865422 234555432 11
Q ss_pred CCC--C--HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGI--D--PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~--~--~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
... . .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+.++|+++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~- 190 (272)
T PRK15056 112 LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD- 190 (272)
T ss_pred ccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-
Confidence 011 1 23456788999885 4678999999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|+|||++||+++++..+||+++++ +|+++..|+++++..
T Consensus 191 ~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 191 EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 5899999999999999999999877 899999999888653
No 198
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-37 Score=295.79 Aligned_cols=170 Identities=21% Similarity=0.277 Sum_probs=145.1
Q ss_pred CCcEEEEEcCCCCCcccc---------C-CceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-SSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~-~- 58 (259)
+||+++|+|||||||||| + ++|+|.++|.++ ++.++|++|++ .+++.+|+.+++. +
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~ 366 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAA 366 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhh
Confidence 799999999999999999 2 799999999753 23589999985 3667788876542 2
Q ss_pred ---cCC---CCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 59 ---VAG---IDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 59 ---~~~---~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
+.. .+. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 446 (506)
T PRK13549 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK 446 (506)
T ss_pred hhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH
Confidence 111 121 3466789999984 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+|.++++ .|+|||++|||++++.++||++++|++|+++..++++++.
T Consensus 447 ~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 447 LINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 9999875 5999999999999999999999999999999999887763
No 199
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.3e-37 Score=296.09 Aligned_cols=171 Identities=17% Similarity=0.250 Sum_probs=144.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHhc---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIFG--- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~~--- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++..
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~ 367 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTH 367 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhh
Confidence 799999999999999999 4899999999754 23589999874 36777777654321
Q ss_pred ----cCCCC---HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 59 ----VAGID---PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 59 ----~~~~~---~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
..... .+.+.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~ 447 (510)
T PRK15439 368 NRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR 447 (510)
T ss_pred hhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHH
Confidence 11011 12356789999984 367899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++++ .|.|||++|||++++.++||++++|++|+++..++++++..
T Consensus 448 ~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 448 SIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9876 58999999999999999999999999999999998887653
No 200
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-36 Score=293.52 Aligned_cols=172 Identities=22% Similarity=0.349 Sum_probs=145.2
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEc-----------------------Cee----------------
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYL-----------------------GGE---------------- 32 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~-----------------------G~~---------------- 32 (259)
+||+++|+|||||||||| +++|+|.++ |.+
T Consensus 25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 104 (520)
T TIGR03269 25 EGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLR 104 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHH
Confidence 799999999999999998 268999986 211
Q ss_pred --ccccEEEeccc-CCCCccCcHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc
Q 024989 33 --WRREVAFAGFE-VPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL 100 (259)
Q Consensus 33 --~~~~i~~v~~~-~~~~~~lt~~~~~-~~~--~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~ 100 (259)
+++.++|++|+ ..+++.+|+.+++ +.. .+.+. +++.++++.+++. .++++.+|||||||||+||+||+
T Consensus 105 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 105 RRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred HHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHh
Confidence 13458999997 5677778876654 221 22222 3466789999985 36789999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.+|++|||||||++||+.++..++++|++++++.|+|||+||||++++.++||++++|++|+++..|+++++..
T Consensus 185 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999999999999999999999999999876669999999999999999999999999999999999887754
No 201
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=266.54 Aligned_cols=170 Identities=22% Similarity=0.239 Sum_probs=141.8
Q ss_pred CCcEEEEEcCCCCCccccC---------C-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. + +|+|.++|.++ ++.++|++|++.+++.+|+.+++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~ 108 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA 108 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHH
Confidence 7999999999999999992 2 79999999764 235899999988888888876543
Q ss_pred cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
.. .+. .. +.+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 188 (252)
T PRK14272 109 GLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188 (252)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 21 221 22 2233455556542 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|++++ + ++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 189 ~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 189 DLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999875 3 6999999999999999999999999999999999988765
No 202
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-36 Score=263.38 Aligned_cols=168 Identities=21% Similarity=0.232 Sum_probs=136.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhcc-CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGV-AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.++.. |+.+++... .....
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~ 106 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATD 106 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCH
Confidence 799999999999999999 4899999999754 3459999998777665 776655322 11222
Q ss_pred HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
.+..++++.+++ . .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|.++.
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (229)
T cd03254 107 EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186 (229)
T ss_pred HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 333333333332 1 234578999999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 187 -~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 187 -K-GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred -C-CCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence 3 8999999999999875 99999999999999888877654
No 203
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.8e-37 Score=293.09 Aligned_cols=170 Identities=22% Similarity=0.338 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------C--CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T--SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~--~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|||||||||| + ++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ..
T Consensus 26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 105 (500)
T TIGR02633 26 PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEI 105 (500)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccc
Confidence 799999999999999999 2 589999999764 245999999988888889876542 21
Q ss_pred C--C--CCH----HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 60 A--G--IDP----QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 60 ~--~--~~~----~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
. + ... +++.++++.+++.. ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (500)
T TIGR02633 106 TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185 (500)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 1 1 121 34567899999852 45689999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus 186 ~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 186 DLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 9865 5999999999999999999999999999999988876543
No 204
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-36 Score=263.43 Aligned_cols=164 Identities=24% Similarity=0.329 Sum_probs=138.4
Q ss_pred CCcEEEEEcCCCCCcccc--------C----CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh-c--cC--
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T----SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF-G--VA-- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~----~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~-~--~~-- 60 (259)
+||+++|+|||||||||| . ++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . ..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 799999999999999999 2 699999999764 456999999988888888876542 1 11
Q ss_pred C-CCH----HHHHH-HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 61 G-IDP----QRRAE-LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 61 ~-~~~----~~~~~-~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
. ... ....+ +++.+++. .++.+.+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~ 191 (226)
T cd03234 112 RKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191 (226)
T ss_pred cccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 1 111 12334 77788775 3567899999999999999999999999999999999999999999999999865
Q ss_pred hcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEec
Q 024989 133 ERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 133 ~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g 167 (259)
.|.|||++||++ +++.++||++++|++|+++..|
T Consensus 192 -~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 192 -RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred -CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 489999999999 5899999999999999998754
No 205
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7e-37 Score=293.97 Aligned_cols=170 Identities=21% Similarity=0.341 Sum_probs=145.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh-cc-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF-GV- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~-~~- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++. ..
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 356 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL 356 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhh
Confidence 699999999999999999 4899999999753 24599999986 4667788876542 11
Q ss_pred ---C---C-CC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 60 ---A---G-ID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 60 ---~---~-~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
. + .+ .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 436 (501)
T PRK10762 357 RYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436 (501)
T ss_pred hhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 0 1 11 13456789999983 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+|+++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus 437 ~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 437 LINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 9999875 4999999999999999999999999999999999887653
No 206
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=270.41 Aligned_cols=170 Identities=21% Similarity=0.233 Sum_probs=142.6
Q ss_pred CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| . ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~ 142 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAY 142 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHh
Confidence 799999999999999999 1 789999999653 3469999999877764 7776553
Q ss_pred cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
.. .+. +. +.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~ 222 (286)
T PRK14275 143 GPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE 222 (286)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 21 122 11 2345677777762 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+++. + +.|||++||+++++..+|||+++|++|+++..|+.+++.+.
T Consensus 223 ~~L~~~~-~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 223 DLIQELR-G-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred HHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999875 3 68999999999999999999999999999999999887653
No 207
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.6e-37 Score=264.10 Aligned_cols=160 Identities=28% Similarity=0.385 Sum_probs=137.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~ 109 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL 109 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence 699999999999999999 4899999999864 246999999988888888876542 1 1
Q ss_pred C-CCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 A-GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 ~-~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
. .... +.+.++++.+++. .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ 189 (220)
T TIGR02982 110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1 1222 3467788999985 4678899999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
+.|+|||++||+++. .++||++++|++|++
T Consensus 190 ~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 190 EQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred HcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 568999999999985 579999999999986
No 208
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-36 Score=270.95 Aligned_cols=169 Identities=18% Similarity=0.267 Sum_probs=144.3
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+||+++|+|+|||||||| .++|+|.++|.++ ++.++|++|++.+|+. |+.+++........++
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~ 107 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEE 107 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccCCCHHH
Confidence 799999999999999999 3799999999764 3569999999888864 7777664222234566
Q ss_pred HHHHHHHcCCC--ccccCCc-----------CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 67 RAELIKVLDID--LSWRMHK-----------VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~-----------LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
+.++++.+++. .++.+.. ||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++..
T Consensus 108 ~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-- 185 (275)
T cd03289 108 IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-- 185 (275)
T ss_pred HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--
Confidence 77788888874 2444444 99999999999999999999999999999999999999999999763
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|||++||+++++.. ||||++|++|+++..|+++++...
T Consensus 186 ~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 186 ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC
Confidence 48999999999999876 999999999999999999998763
No 209
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=268.74 Aligned_cols=169 Identities=19% Similarity=0.186 Sum_probs=142.8
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~ 123 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITF 123 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHh
Confidence 7999999999999999991 489999999764 345899999877776 57776553
Q ss_pred cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+. .+. .. +++.++++.+++. .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 203 (267)
T PRK14237 124 ALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE 203 (267)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 21 121 11 2345678888773 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++|+++. + +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 204 ~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 204 ETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999874 3 7899999999999999999999999999999999988754
No 210
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=268.47 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=141.7
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~ 113 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAY 113 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHh
Confidence 7999999999999999992 589999999754 3459999998877764 7766542
Q ss_pred cc--CCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989 58 GV--AGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126 (259)
Q Consensus 58 ~~--~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~ 126 (259)
.. .+.. .+++.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 193 (264)
T PRK14243 114 GARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193 (264)
T ss_pred hhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 21 1111 13345567777662 3567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe---------CCeEEEecChhHHHHH
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIVYVA---------HGKLQLAMPMDKVKEA 175 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~---------~G~i~~~g~~~~~~~~ 175 (259)
|.++.+ +.|||++||+++++.++|||+++|+ +|++++.|+++++...
T Consensus 194 L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 194 MHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249 (264)
T ss_pred HHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 999853 5899999999999999999999998 8999999999998653
No 211
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=264.81 Aligned_cols=169 Identities=19% Similarity=0.216 Sum_probs=141.2
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~ 58 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++ .|+.+++. .
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~ 106 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG 106 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhH
Confidence 7999999999999999992 389999999653 245899999988776 67766543 2
Q ss_pred c--CCCC-H----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 59 V--AGID-P----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 59 ~--~~~~-~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
. .+.. . +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 186 (249)
T PRK14253 107 LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186 (249)
T ss_pred HHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 1 1221 1 2345567777762 246788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|+++.+ +.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 187 ~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 187 LMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999853 5899999999999999999999999999999999887754
No 212
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=265.14 Aligned_cols=170 Identities=17% Similarity=0.153 Sum_probs=141.7
Q ss_pred CCcEEEEEcCCCCCccccC---------C-----ceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S-----SGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~-----~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. + +|+|.++|.+. ++.++|++|++.+++. |+.+++.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~ 107 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAF 107 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhh
Confidence 7999999999999999992 3 59999999753 3459999999887764 7766542
Q ss_pred cc--CCCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
.. .+.. .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 187 (251)
T PRK14249 108 GPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIE 187 (251)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 21 1211 12345567777752 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++|+++ + .|.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus 188 ~~l~~~-~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 188 ELMQEL-K-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred HHHHHH-h-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 999987 3 489999999999999999999999999999999999887653
No 213
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-36 Score=258.36 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=132.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|+|||||||| +++|+|.++|.+. ++.++|++|++.+++ .|+.+++........+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~ 111 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDE 111 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCCCCHH
Confidence 799999999999999999 4899999999763 356999999987765 4777766322222333
Q ss_pred HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
.+.+.++ .++++.+|||||+||++|||||+.+|+++||||||+|||+.++..+++.|+++. .|.|+|++||++
T Consensus 112 ~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~ 184 (207)
T cd03369 112 EIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRL 184 (207)
T ss_pred HHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH
Confidence 3333333 356789999999999999999999999999999999999999999999999874 389999999999
Q ss_pred hHHhccCCeEEEEeCCeEEEecC
Q 024989 146 DGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 146 ~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
+++.. ||++++|++|+++..|+
T Consensus 185 ~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 185 RTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHhh-CCEEEEEECCEEEecCC
Confidence 99976 99999999999988765
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=271.30 Aligned_cols=169 Identities=21% Similarity=0.290 Sum_probs=141.6
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||+ ++|+|.++|.++ ++.++|++|++.+++. ++.+++.
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~ 142 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAY 142 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHH
Confidence 7999999999999999991 589999999754 3458999998877764 7766542
Q ss_pred c--cCCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989 58 G--VAGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126 (259)
Q Consensus 58 ~--~~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~ 126 (259)
. ..+.. .+++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~ 222 (285)
T PRK14254 143 GLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222 (285)
T ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 2 11222 23466788888873 3567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEE-EEeCCeEEEecChhHHHH
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIV-YVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~-~l~~G~i~~~g~~~~~~~ 174 (259)
|+++++ +.|||++||+++++..+|||++ +|++|+++..|+++++..
T Consensus 223 L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 223 IEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 999864 4799999999999999999975 679999999999888754
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=290.97 Aligned_cols=166 Identities=20% Similarity=0.316 Sum_probs=143.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV---- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~---- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. ..
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (501)
T PRK11288 29 AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK 108 (501)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc
Confidence 799999999999999999 4899999999764 346999999988888888876543 21
Q ss_pred CC-CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 AG-ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 ~~-~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.+ .+ .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (501)
T PRK11288 109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 12 12 13456789999985 4678899999999999999999999999999999999999999999999999865
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecCh
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 169 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~ 169 (259)
.|.|||++||+++++..+||++++|++|+++..++.
T Consensus 189 -~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 189 -EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred -CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 599999999999999999999999999999876653
No 216
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.7e-36 Score=263.01 Aligned_cols=164 Identities=20% Similarity=0.308 Sum_probs=136.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c--cCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~ 62 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. . ..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~ 110 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC
Confidence 799999999999999999 4899999999754 346899999887776 47776542 1 1221
Q ss_pred --CHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 63 --DPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 63 --~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
..+++.++++.+++. .++++.+|||||+||++||+||+.+|++|||||||+|||+.++..+.+.|.++.++.|.|
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 190 (225)
T PRK10247 111 QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIA 190 (225)
T ss_pred ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 234466889999984 367899999999999999999999999999999999999999999999999987656899
Q ss_pred EEEEeCChhHHhccCCeEEEEe-CCeEEEecC
Q 024989 138 IIYATHIFDGLENWPSHIVYVA-HGKLQLAMP 168 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~-~G~i~~~g~ 168 (259)
||++||+++++. .||++++|+ ++..+.+|+
T Consensus 191 vii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 191 VLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 999999999996 699999995 555555554
No 217
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-36 Score=291.58 Aligned_cols=170 Identities=21% Similarity=0.254 Sum_probs=142.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCC---c-----cCcHHHHHh
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQ---M-----DVSAEKMIF 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~---~-----~lt~~~~~~ 57 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++... . .+++.+++.
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 107 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ 107 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence 799999999999999999 4899999988643 23489998875431 1 345555432
Q ss_pred ccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 58 GVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 58 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.. ....+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|
T Consensus 108 ~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g 185 (490)
T PRK10938 108 DE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SG 185 (490)
T ss_pred cc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cC
Confidence 11 11234567899999985 4678999999999999999999999999999999999999999999999999875 58
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|||++||+++++.++||++++|++|+++..|+++++..
T Consensus 186 ~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 186 ITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred CeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999888754
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=264.72 Aligned_cols=170 Identities=23% Similarity=0.248 Sum_probs=140.9
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~ 108 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIY 108 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHH
Confidence 7999999999999999991 389999999754 245999999987776 57765442
Q ss_pred c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. .. +.+.+.++.+++. .++.+.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 188 (252)
T PRK14255 109 GLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIE 188 (252)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 2 1221 11 2334566777652 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++|+++.+ +.|||++||+++++.++||++++|++|+++..+++.++...
T Consensus 189 ~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 189 NMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred HHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999853 58999999999999999999999999999999998887643
No 219
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-36 Score=292.14 Aligned_cols=169 Identities=21% Similarity=0.257 Sum_probs=143.5
Q ss_pred CCcEEEEEcCCCCCcccc---------C-CceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh-c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-SSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF-G- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~-~- 58 (259)
+||+++|+|||||||||| + ++|+|.++|+++ ++.++|++|++ .+++.+|+.+++. .
T Consensus 285 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~ 364 (500)
T TIGR02633 285 RGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSV 364 (500)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchh
Confidence 799999999999999999 2 699999999654 24589999985 4677888876542 1
Q ss_pred ---cC---CCC----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 59 ---VA---GID----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 59 ---~~---~~~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
.. ... .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 444 (500)
T TIGR02633 365 LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK 444 (500)
T ss_pred hhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH
Confidence 11 112 12456789999984 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
+|.++++ .|.|||++|||++++.++||++++|++|+++..++.+++
T Consensus 445 ~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 445 LINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999875 599999999999999999999999999999988866543
No 220
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=267.13 Aligned_cols=169 Identities=20% Similarity=0.215 Sum_probs=142.6
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+|||||||| + ++|+|.++|.++ ++.++|++|++.++ .+|+.+++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~ 111 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAF 111 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHH
Confidence 799999999999999998 2 599999999764 24589999988776 577776542
Q ss_pred cc--CCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989 58 GV--AGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126 (259)
Q Consensus 58 ~~--~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~ 126 (259)
+. .+.. .+++.++++.+++. .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~ 191 (261)
T PRK14263 112 GLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL 191 (261)
T ss_pred HHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 21 1111 23466788888873 1356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe--------CCeEEEecChhHHHH
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIVYVA--------HGKLQLAMPMDKVKE 174 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~--------~G~i~~~g~~~~~~~ 174 (259)
|++++ + +.|||++||+++++.++|||+++|+ +|++++.|+.+++.+
T Consensus 192 l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 192 MVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred HHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 99984 3 7899999999999999999999996 899999999998765
No 221
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-36 Score=261.29 Aligned_cols=168 Identities=24% Similarity=0.312 Sum_probs=136.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. .......
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~ 104 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATD 104 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCCCCH
Confidence 799999999999999999 4899999999764 345999999987775 57776553 2222222
Q ss_pred HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
....+.++.+++ . .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..+++.|.+++
T Consensus 105 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 184 (236)
T cd03253 105 EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184 (236)
T ss_pred HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 223332322222 1 234578999999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 185 -~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 185 -K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred -C-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence 4 8999999999999976 99999999999999998887754
No 222
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=268.51 Aligned_cols=169 Identities=21% Similarity=0.221 Sum_probs=142.9
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|||||||||| + ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~ 128 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVY 128 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHH
Confidence 799999999999999999 1 599999999753 3468999998877775 7776542
Q ss_pred c--cCCC-C----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-D----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. . .+.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 208 (272)
T PRK14236 129 GLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE 208 (272)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 2221 1 12356678888773 25678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|++++ + +.|||++||+++++.++||++++|++|+++..|+++++..
T Consensus 209 ~~L~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 209 ELITELK-S-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHHHHH-h-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 9999985 3 6899999999999999999999999999999999888754
No 223
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=268.00 Aligned_cols=170 Identities=21% Similarity=0.216 Sum_probs=141.4
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++. ++.+++.
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~ 123 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAF 123 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHh
Confidence 7999999999999999992 389999999754 2468999999877764 7766542
Q ss_pred cc--CCCC---HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989 58 GV--AGID---PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126 (259)
Q Consensus 58 ~~--~~~~---~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~ 126 (259)
+. .+.. .+.+.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~ 203 (274)
T PRK14265 124 APRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL 203 (274)
T ss_pred HHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 21 1111 22345567777752 3567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe---------CCeEEEecChhHHHHH
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIVYVA---------HGKLQLAMPMDKVKEA 175 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~---------~G~i~~~g~~~~~~~~ 175 (259)
|.+++ + +.|||++||+++++..+|||+++|+ +|+++..|+++++...
T Consensus 204 L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 204 CLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS 259 (274)
T ss_pred HHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 99985 3 6899999999999999999999998 8999999999988653
No 224
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=266.12 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=142.5
Q ss_pred CCCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh
Q 024989 2 VEPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF 57 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~ 57 (259)
-+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+|+ .|+.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~ 109 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVA 109 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHH
Confidence 37999999999999999992 379999999754 235999999988776 78876543
Q ss_pred -cc--CC-CCH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 58 -GV--AG-IDP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 58 -~~--~~-~~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
+. .+ .+. +.+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 189 (259)
T PRK14260 110 YGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189 (259)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 21 11 121 2345677888762 3567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe-----CCeEEEecChhHHHH
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-----HGKLQLAMPMDKVKE 174 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~-----~G~i~~~g~~~~~~~ 174 (259)
++.|+++. + ++|||++||+++++..+||++++|+ +|+++..|+++++.+
T Consensus 190 ~~~l~~~~-~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 190 EELIHSLR-S-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred HHHHHHHh-c-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 99999975 3 6899999999999999999999998 599999999998764
No 225
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=266.57 Aligned_cols=170 Identities=21% Similarity=0.240 Sum_probs=140.5
Q ss_pred CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+|||||||| . ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~ 127 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTY 127 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHH
Confidence 799999999999999999 2 679999999754 3459999999877764 7766542
Q ss_pred c--cCCC-CH----HHHHHHHHHcCC----C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-DP----QRRAELIKVLDI----D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~~----~~~~~~l~~~~l----~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+ ..+. +. +.+.++++.+++ . .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~ 207 (271)
T PRK14238 128 GPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207 (271)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 2 1222 11 123455666543 1 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++|+++. + +.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus 208 ~~l~~~~-~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 208 ELVQELK-K-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHHH-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999875 3 68999999999999999999999999999999999887643
No 226
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.5e-36 Score=263.44 Aligned_cols=168 Identities=21% Similarity=0.227 Sum_probs=139.7
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc-------c--cEEEecccCCCCccCcHHHHHh-ccC-
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR-------R--EVAFAGFEVPIQMDVSAEKMIF-GVA- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~-------~--~i~~v~~~~~~~~~lt~~~~~~-~~~- 60 (259)
+||+++|+|+|||||||| +++|+|.++|.++. . .++|++|++.+++.++..+++. ...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~ 111 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS 111 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhh
Confidence 799999999999999999 26899999997642 1 3678889888888788766432 110
Q ss_pred -----C---CC----HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 61 -----G---ID----PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 61 -----~---~~----~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. .. .+++.++++.+++. .++++. +|||||+||++||+||+.+|++|||||||+|||+.++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 191 (252)
T CHL00131 112 KRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191 (252)
T ss_pred hhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 11 12346788888885 256676 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDK 171 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~ 171 (259)
+.|+++.+ .|.|||++||+++++..+ ||++++|++|+++..|+++.
T Consensus 192 ~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 192 EGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 99999864 589999999999999887 89999999999999998873
No 227
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-36 Score=264.86 Aligned_cols=156 Identities=25% Similarity=0.339 Sum_probs=138.5
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 72 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~ 72 (259)
-+||.++|+|.|||||||| +++|+|.+.|+++...- . ....+++.++++
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------------~--------~~~~~~v~elL~ 94 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------------K--------EERRERVLELLE 94 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------------h--------hHHHHHHHHHHH
Confidence 3799999999999999999 59999999998742210 0 011345788999
Q ss_pred HcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 73 VLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 73 ~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
.+|+. ..+.+++|||||+||++|||||+.+|+++++|||+++||...+.++.++|.++.++.|.|.+++|||+..+.
T Consensus 95 ~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 95 KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 99985 468899999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989 150 NWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179 (259)
Q Consensus 150 ~~~drv~~l~~G~i~~~g~~~~~~~~~~~~ 179 (259)
.+||||++|..|+|++.|+.+++.......
T Consensus 175 ~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 175 YISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred hhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 999999999999999999999998855443
No 228
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4e-36 Score=259.31 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=134.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++........+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~ 107 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDE 107 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCCCCHH
Confidence 699999999999999999 4899999999753 356999999887665 4777765432223344
Q ss_pred HHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++.+++. .+.++.+||+||+||++|||||+.+|+++||||||+|||+.++..+++.|+++.
T Consensus 108 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~- 186 (221)
T cd03244 108 ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF- 186 (221)
T ss_pred HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence 455555555542 135688999999999999999999999999999999999999999999999874
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
+ +.|||++||+++++.. ||++++|++|+++..|+
T Consensus 187 ~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 187 K-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred C-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 3 6899999999999986 99999999999988765
No 229
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-36 Score=251.85 Aligned_cols=133 Identities=26% Similarity=0.458 Sum_probs=120.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------- 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------- 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh---------
Confidence 799999999999999999 4899999999754 356899999988777777765431
Q ss_pred HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 96 ------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~ 156 (173)
T cd03230 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE 156 (173)
T ss_pred ------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HHhccCCeEEEEeCCeE
Q 024989 147 GLENWPSHIVYVAHGKL 163 (259)
Q Consensus 147 ~~~~~~drv~~l~~G~i 163 (259)
++..+||++++|++|++
T Consensus 157 ~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 157 EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHhCCEEEEEeCCCC
Confidence 99999999999999974
No 230
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=272.81 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=143.5
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||.++|+||||||||||. ++|+|.++|.++ ++.++|++|++.++. .|+.+++.
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~ 185 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAY 185 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHh
Confidence 7999999999999999992 389999999875 346999999988775 67766543
Q ss_pred cc--CCCCH-H----HHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGIDP-Q----RRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~~~-~----~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
+. .+.+. + .+.++++.+++. .+++..+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~ 265 (329)
T PRK14257 186 GPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265 (329)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 22 22222 1 245677777762 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+++.+ ++|||++||+++++.++||||++|++|++++.|+++++...
T Consensus 266 ~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 266 ELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99998753 68999999999999999999999999999999999998754
No 231
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=268.06 Aligned_cols=170 Identities=21% Similarity=0.229 Sum_probs=142.9
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~ 58 (259)
+||+++|+|+|||||||| + ++|+|.++|.++ ++.++|++|++.+++ .|+.+++. .
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~ 124 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAG 124 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHH
Confidence 799999999999999999 2 499999999653 346899999987777 67776542 2
Q ss_pred c--CC-CCHH----HHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 59 V--AG-IDPQ----RRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 59 ~--~~-~~~~----~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
. .. .+.. .+.++++.+++. .++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~ 204 (276)
T PRK14271 125 VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE 204 (276)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1 11 1222 235677888874 245688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+++.+ ++|||++||+++++.++|||+++|++|+++..|+++++.+.
T Consensus 205 ~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 205 FIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9998853 48999999999999999999999999999999999988653
No 232
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.2e-36 Score=258.09 Aligned_cols=154 Identities=22% Similarity=0.334 Sum_probs=130.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. .
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~ 102 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK 102 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence 799999999999999999 4899999999862 246999999988888888876542 1
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.. .+++.++++.+++. .++++.+||+|||||++||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 182 (206)
T TIGR03608 103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND 182 (206)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence 11222 23456789999985 4678899999999999999999999999999999999999999999999999875
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEE
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
.|.|||++||+++.+ .+||++++|
T Consensus 183 -~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 183 -EGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred -cCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 489999999999976 579999875
No 233
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=263.25 Aligned_cols=169 Identities=21% Similarity=0.214 Sum_probs=141.7
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+++. |+.+++.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~ 109 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAY 109 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHh
Confidence 7999999999999999992 279999999763 2358999999887764 7776542
Q ss_pred c--cCCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 G--VAGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~--~~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. ..+. .. +.+.++++.+++. .++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~ 189 (253)
T PRK14261 110 GPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189 (253)
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 1121 11 2345677777762 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|+++++ ++|||++||+++++.++||++++|++|+++..|+++++..
T Consensus 190 ~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 190 DLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 99998853 5899999999999999999999999999999999988764
No 234
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.9e-36 Score=259.64 Aligned_cols=160 Identities=18% Similarity=0.320 Sum_probs=131.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-c--cCCCCH----HH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP----QR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~----~~ 66 (259)
+||+++|+|||||||||| +++|+|.++|.+.. +......+++.+|+.+++. . ..+.+. ++
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 122 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS----LLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch----hhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 799999999999999999 48999999997642 1112233456678876542 1 122222 23
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+.++++.+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.+++.++++|.++++ .|.|||++||+
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sH~ 201 (224)
T cd03220 123 IDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHD 201 (224)
T ss_pred HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 56678888885 3678899999999999999999999999999999999999999999999999876 48999999999
Q ss_pred hhHHhccCCeEEEEeCCeEEEec
Q 024989 145 FDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~G~i~~~g 167 (259)
++++..+||++++|++|+++..|
T Consensus 202 ~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 202 PSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999998654
No 235
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=247.08 Aligned_cols=170 Identities=26% Similarity=0.351 Sum_probs=149.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee--------------ccccEEEecccCCCCccCcHHHHHhc-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE--------------WRREVAFAGFEVPIQMDVSAEKMIFG- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~--------------~~~~i~~v~~~~~~~~~lt~~~~~~~- 58 (259)
+||.+.++||||+||||| +.+|+..+.|.. +++++|+++|+..+++.+|+.+++..
T Consensus 27 ~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea 106 (242)
T COG4161 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA 106 (242)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh
Confidence 799999999999999999 589999998853 25679999999999999998765532
Q ss_pred ---cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 59 ---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 59 ---~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..+.+. .+..++++++.+. .++.+-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|++
T Consensus 107 p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iike 186 (242)
T COG4161 107 PCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186 (242)
T ss_pred hHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence 223332 3456788888885 4778889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+.. .|.|-+++||..+.+.+++.+|+.|.+|+|++.|+.+-..
T Consensus 187 l~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 187 LAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence 975 6999999999999999999999999999999999887654
No 236
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.5e-36 Score=253.54 Aligned_cols=137 Identities=26% Similarity=0.460 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccc--------cEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR--------EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~--------~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|||||||||| +++|+|.++|.++.. .++|++|
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q----------------------- 80 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ----------------------- 80 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------------------
Confidence 799999999999999999 489999999976421 1222222
Q ss_pred HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 66 RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 66 ~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
+++.+++. .++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++||
T Consensus 81 ----~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 81 ----ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred ----HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 67777774 356789999999999999999999999999999999999999999999999986544899999999
Q ss_pred ChhHHhccCCeEEEEeCCeEEEe
Q 024989 144 IFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 144 ~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
+++++.++||++++|++|+++..
T Consensus 157 ~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 157 DLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred CHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999998764
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.7e-35 Score=259.65 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=136.8
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh----c
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF----G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~----~ 58 (259)
+||+++|+|||||||||| +++|+|.++|.++. ..++|++|++.+++.++...+.. .
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 105 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA 105 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhh
Confidence 699999999999999999 35899999997531 35899999877766655433211 0
Q ss_pred c---CC---CC----HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 59 V---AG---ID----PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 59 ~---~~---~~----~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
. .. .. .+.+.++++.+++. .++++. +||||||||++||+||+.+|++|||||||+|||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~ 185 (248)
T PRK09580 106 VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185 (248)
T ss_pred hhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH
Confidence 0 01 11 12345677888874 244554 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~~ 172 (259)
+.|+++++ .|+|||++||+++++..+ ||++++|++|+++..|+.+.+
T Consensus 186 ~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 186 DGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99998864 589999999999999987 899999999999999987744
No 238
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.8e-36 Score=295.59 Aligned_cols=169 Identities=24% Similarity=0.300 Sum_probs=142.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||+++|+|+|||||||| +++|+|.++|.++ |+++||++|++.+|... +.+++ ++....+.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gS-I~eNi~l~~p~~~~ 576 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGS-IRENIALGNPEATD 576 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCc-HHHHHhcCCCCCCH
Confidence 699999999999999999 5899999999864 68899999998887664 55544 45444454
Q ss_pred HHHHHHHHHcCCC---------c----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------L----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.+++...+.. . ...-..||||||||++|||||+++|++||||||||+||+.+.+.+.+.|.+..
T Consensus 577 e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 577 EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 5555554444331 1 23446899999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||.+..+.. ||||++|++|+++.+|+.+++.+.
T Consensus 657 --~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 657 --QGRTVIIIAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred --cCCeEEEEEccchHhhh-ccEEEEccCCceeccCCHHHHHHh
Confidence 47999999999998876 999999999999999999999875
No 239
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.9e-36 Score=291.07 Aligned_cols=169 Identities=21% Similarity=0.315 Sum_probs=143.3
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~ 65 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+++++ ++....+.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~~~~e 453 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPDASDE 453 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCCCCCHH
Confidence 799999999999999999 5899999999764 5679999999988876 666655 443445666
Q ss_pred HHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++..++. .+ ..-.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++.
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~- 532 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS- 532 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-
Confidence 666666665541 12 2345799999999999999999999999999999999999999999998874
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 533 -~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 533 -RRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred -CCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhc
Confidence 47999999999988875 999999999999999999998754
No 240
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=261.45 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=142.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcC------eec--------cccEEEecccCCCCccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLG------GEW--------RREVAFAGFEVPIQMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G------~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~ 58 (259)
+||+++|+|+|||||||| +++|+|.++| .+. ++.++|++|++.+++.+|+.+++. .
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP 114 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence 799999999999999999 3676666555 332 356899999988888888876543 2
Q ss_pred c--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 59 V--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 59 ~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
. .+. .. +++.++++.+++. .++.+..||+|||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~ 194 (257)
T PRK14246 115 LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194 (257)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 1 121 22 2346778888873 356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|.+++ + +.|||++||+++++..+||++++|++|+++..|+.+++.+.
T Consensus 195 ~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 195 LITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999885 3 68999999999999999999999999999999999888653
No 241
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-36 Score=250.26 Aligned_cols=135 Identities=27% Similarity=0.365 Sum_probs=119.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHhccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIFGVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~---- 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG---- 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec----
Confidence 799999999999999999 4899999999753 24589999988777777776543210
Q ss_pred HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
||||||||++||+||+.+|+++||||||+|||+.++..++++|++++++.|.|+|++||
T Consensus 101 ---------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred ---------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999987644899999999
Q ss_pred ChhHHhccCCeEEEEeCCe
Q 024989 144 IFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 144 ~~~~~~~~~drv~~l~~G~ 162 (259)
+++++..+||++++|++|+
T Consensus 160 ~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 160 DLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999884
No 242
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.8e-36 Score=255.47 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=134.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCC-C
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAG-I 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~-~ 62 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+++.+|+.+++. . ..+ .
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 105 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPG 105 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCcc
Confidence 799999999999999999 4899999999764 346899998888888888877552 1 222 2
Q ss_pred CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 63 DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 63 ~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
..+++.++++.+++. .++++.+||||||||++||+||+++|+++||||||+|||+.++..++++|+++++ .|.|||+
T Consensus 106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii 184 (204)
T PRK13538 106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVIL 184 (204)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 335567899999985 4678899999999999999999999999999999999999999999999999865 5899999
Q ss_pred EeCChhHHhccCCeEEEE
Q 024989 141 ATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l 158 (259)
+||+++++..+.+|++++
T Consensus 185 ~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 185 TTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EecChhhhccCCceEEec
Confidence 999999999988888776
No 243
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-36 Score=282.99 Aligned_cols=171 Identities=20% Similarity=0.342 Sum_probs=146.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee--------ccccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE--------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~--------~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+|+.++|+|+|||||||| +++|+|.++|.+ |+++++|++|++.+|...-.+++.++....+.+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e 425 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDE 425 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHH
Confidence 799999999999999999 489999999975 568899999998888765444444554445667
Q ss_pred HHHHHHHHcCCC--------ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 66 RRAELIKVLDID--------LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 66 ~~~~~l~~~~l~--------~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
++.++++..++. .+..+ ..|||||+|||++||||+++++++||||||++||.++.+.+.+.|.++++
T Consensus 426 ~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~- 504 (559)
T COG4988 426 EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK- 504 (559)
T ss_pred HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-
Confidence 777888777652 12223 45999999999999999999999999999999999999999999999864
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
++|+|++||++..+.. ||+|++|++|++++.|+.+++.++.
T Consensus 505 -~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~ 545 (559)
T COG4988 505 -QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQ 545 (559)
T ss_pred -CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcC
Confidence 5899999999999887 8999999999999999999997653
No 244
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.4e-35 Score=253.03 Aligned_cols=145 Identities=20% Similarity=0.258 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhccCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFGVAGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~ 62 (259)
+||+++|+|+|||||||| +++|+|.++|.++ +..++|++|++.+++.+++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l------ 98 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL------ 98 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH------
Confidence 799999999999999998 3789999999764 12489999987777766655433
Q ss_pred CHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 63 DPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 63 ~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
+....+|||||+||++||+||+.+|+++||||||+|||+.++..+++.|+++++ .|.|||++|
T Consensus 99 ----------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~s 161 (200)
T cd03217 99 ----------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIIT 161 (200)
T ss_pred ----------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 112368999999999999999999999999999999999999999999999864 589999999
Q ss_pred CChhHHhc-cCCeEEEEeCCeEEEecChh
Q 024989 143 HIFDGLEN-WPSHIVYVAHGKLQLAMPMD 170 (259)
Q Consensus 143 H~~~~~~~-~~drv~~l~~G~i~~~g~~~ 170 (259)
|+++++.. +||++++|++|++++.++.+
T Consensus 162 h~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 162 HYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred cCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 99999988 79999999999999988443
No 245
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=260.65 Aligned_cols=169 Identities=20% Similarity=0.221 Sum_probs=142.3
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+||||||||||. ++|+|.++|.++ ++.++|++|++.+|+. |+.+++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~ 106 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAY 106 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHh
Confidence 7999999999999999992 689999999764 2459999999887765 6665442
Q ss_pred cc--CCC-CH----HHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 58 GV--AGI-DP----QRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 58 ~~--~~~-~~----~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
.. .+. +. +++.++++.+++. .++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~ 186 (250)
T PRK14266 107 GLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186 (250)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHH
Confidence 21 111 21 3345677888762 25678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++|++++ + |.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 187 ~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 187 DLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 9999884 3 7899999999999999999999999999999999988754
No 246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.9e-36 Score=248.98 Aligned_cols=130 Identities=25% Similarity=0.320 Sum_probs=115.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++. |+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l--------- 96 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI--------- 96 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC---------
Confidence 799999999999999999 4899999999754 3568999988766653 655432
Q ss_pred HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ .|.|||++||++
T Consensus 97 -------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~ 156 (173)
T cd03246 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRP 156 (173)
T ss_pred -------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 999999999999999999999999999999999999999999999865 589999999999
Q ss_pred hHHhccCCeEEEEeCCeE
Q 024989 146 DGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 146 ~~~~~~~drv~~l~~G~i 163 (259)
+++. +||++++|++|++
T Consensus 157 ~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 157 ETLA-SADRILVLEDGRV 173 (173)
T ss_pred HHHH-hCCEEEEEECCCC
Confidence 9885 7999999999974
No 247
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-36 Score=249.27 Aligned_cols=168 Identities=24% Similarity=0.349 Sum_probs=147.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---ccEEEecccCCCCccCcHHHHH-hcc--CCCCH---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP--- 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~--- 64 (259)
+||+++++|||||||||| ++.|+|.++|..+. ..-|.|+|+..++|.+++.++. +++ .++++
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R 109 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR 109 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence 699999999999999999 58999999998653 3468899999999999876543 543 45543
Q ss_pred -HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 65 -QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 65 -~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
+.+.+.+..+|+. .++++.+|||||||||.|||||+.+|++|+||||+.+||.-+++.+.++|-++.++.|+.+++|
T Consensus 110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli 189 (259)
T COG4525 110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189 (259)
T ss_pred HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 2345678888885 4678999999999999999999999999999999999999999999999999999899999999
Q ss_pred eCChhHHhccCCeEEEEe--CCeEEEecChh
Q 024989 142 THIFDGLENWPSHIVYVA--HGKLQLAMPMD 170 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l~--~G~i~~~g~~~ 170 (259)
||+++++.-+++|+++|. .|+++...+++
T Consensus 190 TH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 190 THDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred eccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999998 48999887776
No 248
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-35 Score=255.37 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=134.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh---ccCCCC-H
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF---GVAGID-P 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~-~ 64 (259)
+||+++|+|+|||||||| +++|+|.++|+++ ++.++|++|.+.+++.+|+.+++. ..++.. .
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 115 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK 115 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH
Confidence 799999999999999999 4899999999764 235899999877787788876542 222222 2
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
+...++++.+++. .++++.+||+|||||++||+|++.+|++|||||||++||+.+++.++++|+++.+ .|.|||++|
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 194 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTT 194 (214)
T ss_pred HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 4456788889885 4678899999999999999999999999999999999999999999999998865 589999999
Q ss_pred CChhHHhccCCeEEEEeC
Q 024989 143 HIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~~ 160 (259)
|+++++.++||++++|+.
T Consensus 195 H~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 195 HGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cChhhhhhhcceEEEEee
Confidence 999999999999999864
No 249
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-35 Score=260.45 Aligned_cols=167 Identities=17% Similarity=0.254 Sum_probs=140.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-c--cCCCCHH----H
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDPQ----R 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~~----~ 66 (259)
+||+++|+|||||||||| +++|+|.++|. ++++++...+++.+|+.+++. . ..+.+.+ .
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-----~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 123 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM 123 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-----EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 799999999999999999 48999999985 455656655666778776542 1 1233332 2
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+..+++.+++. .++++.+||+||+||++||+||+.+|++|||||||+|||+.++..+++.|.++.+ .|.|||++||+
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~ 202 (264)
T PRK13546 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHN 202 (264)
T ss_pred HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 34567777775 4668899999999999999999999999999999999999999999999998864 68999999999
Q ss_pred hhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++++..+||++++|++|+++..|+.+++...
T Consensus 203 ~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 203 LGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 9999999999999999999999999887653
No 250
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.4e-36 Score=250.74 Aligned_cols=137 Identities=25% Similarity=0.371 Sum_probs=119.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHhccCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIFGVAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~~~~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ .+++.+|+.+++....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~- 103 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS- 103 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh-
Confidence 699999999999999999 4899999999754 24689999874 3566677766442110
Q ss_pred CCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 62 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 62 ~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
.||+|||||++||+||+.+|++|||||||+|||+.+++.+++.|+++++ .|.|||++
T Consensus 104 ----------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~ 160 (182)
T cd03215 104 ----------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLI 160 (182)
T ss_pred ----------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 0999999999999999999999999999999999999999999999865 48999999
Q ss_pred eCChhHHhccCCeEEEEeCCeE
Q 024989 142 THIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l~~G~i 163 (259)
||+++++..+||++++|++|++
T Consensus 161 sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 161 SSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred eCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999974
No 251
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2e-35 Score=252.20 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=134.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhcc-CCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~~~ 65 (259)
+||+++|+|+|||||||| +++|+|.++|.+. ++.++|++|++.+++.+|+.+++... .....+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE 104 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence 799999999999999999 4899999999764 34689999988888888887765322 112345
Q ss_pred HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 66 RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 66 ~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
++.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.|+++++ .|.|+|++||
T Consensus 105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH 183 (201)
T cd03231 105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTH 183 (201)
T ss_pred HHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 677899999985 4678899999999999999999999999999999999999999999999998865 5899999999
Q ss_pred ChhHHhccCCeEEEE
Q 024989 144 IFDGLENWPSHIVYV 158 (259)
Q Consensus 144 ~~~~~~~~~drv~~l 158 (259)
+..+...+|++++.+
T Consensus 184 ~~~~~~~~~~~~~~~ 198 (201)
T cd03231 184 QDLGLSEAGARELDL 198 (201)
T ss_pred CchhhhhccceeEec
Confidence 999999999999876
No 252
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=261.20 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=141.2
Q ss_pred CCcEEEEEcCCCCCcccc---------C-----CceEEEEcCeec------------cccEEEecccCCCCccCcHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T-----SSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMI 56 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~-----~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~ 56 (259)
+||+++|+|+|||||||| + ++|+|.++|.+. ++.++|++|++.+++. |+.+++
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni 119 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENV 119 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHH
Confidence 799999999999999999 1 589999988532 3458999999887775 776654
Q ss_pred h-cc--CCCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989 57 F-GV--AGID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 57 ~-~~--~~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~ 122 (259)
. .. .+.. .+.+.++++.+++. .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 199 (265)
T PRK14252 120 AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATAS 199 (265)
T ss_pred HhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 2 21 1211 23445677777652 256789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++.|++++ + +.|||++||+++++.++|||+++|++|+++..|+.+++..
T Consensus 200 l~~~l~~l~-~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 200 IEELISDLK-N-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred HHHHHHHHH-h-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999885 3 6899999999999999999999999999999999988754
No 253
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=251.12 Aligned_cols=173 Identities=21% Similarity=0.329 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccC----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA---- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~---- 60 (259)
.||+++|+||||+||||| +++|++.++|.+. .+.-+.+||+..+-+.+|+.+.+ +|..
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 699999999999999999 4899999999753 34567899998887778888865 3321
Q ss_pred CCC--H--HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 61 GID--P--QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 61 ~~~--~--~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
+-. . +-.++++...++. ..+...+|||||||||.+||.|++ ++++|+|||||+.||+..+..++++.+
T Consensus 106 g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 106 GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 111 1 1246788888875 356788999999999999999975 345999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
+++++ |..|+.|-||++.+..+||||++|++||+++.|+++++....
T Consensus 186 ~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~E 232 (259)
T COG4559 186 QLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232 (259)
T ss_pred HHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHH
Confidence 99975 899999999999999999999999999999999999987643
No 254
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=252.73 Aligned_cols=173 Identities=24% Similarity=0.381 Sum_probs=153.8
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccC----
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA---- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~---- 60 (259)
+|.+++|+||||+|||||+ ++|+|.++|.++ .+.++..-|+..+...+|++++. ||.+
T Consensus 26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 7999999999999999993 899999999864 34567777888888889999865 4432
Q ss_pred C-C---CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 G-I---DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~-~---~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
| . ++..++++++.+++. .++...+||||||||.-||..++++.+.++||||.++||......+++.|++++++.
T Consensus 106 GRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el 185 (252)
T COG4604 106 GRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185 (252)
T ss_pred CCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHh
Confidence 1 1 234467899999985 478899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|+||+++-||++++..++|+|+-|++|+++..|+++++...
T Consensus 186 ~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred CCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999999999998764
No 255
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.8e-35 Score=247.71 Aligned_cols=136 Identities=24% Similarity=0.385 Sum_probs=119.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++ .|+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i---------- 95 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL---------- 95 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh----------
Confidence 799999999999999999 4899999999753 356899998876654 4554432
Q ss_pred HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+.+||+||+||++|||||+.+|++|||||||+|||+.+++.+++.|+++. +|.|||++||+++
T Consensus 96 ---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~ 158 (178)
T cd03247 96 ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLT 158 (178)
T ss_pred ---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH
Confidence 67999999999999999999999999999999999999999999999874 3899999999999
Q ss_pred HHhccCCeEEEEeCCeEEEec
Q 024989 147 GLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 147 ~~~~~~drv~~l~~G~i~~~g 167 (259)
++. .||++++|++|++++.|
T Consensus 159 ~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 159 GIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHH-hCCEEEEEECCEEEecC
Confidence 997 69999999999998653
No 256
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-35 Score=252.93 Aligned_cols=155 Identities=22% Similarity=0.299 Sum_probs=132.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh---ccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF---GVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~~~ 65 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|+..+++.+|+.+++. ...+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEEL 106 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHH
Confidence 799999999999999999 4899999999763 446899998877777888876542 12233345
Q ss_pred HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 66 RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 66 ~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
++.++++.+++. .++++++||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||
T Consensus 107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH 185 (207)
T PRK13539 107 DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATH 185 (207)
T ss_pred HHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 578899999985 3678899999999999999999999999999999999999999999999998865 5999999999
Q ss_pred ChhHHhccCCeEEEEeC
Q 024989 144 IFDGLENWPSHIVYVAH 160 (259)
Q Consensus 144 ~~~~~~~~~drv~~l~~ 160 (259)
+++++.. |+++.+..
T Consensus 186 ~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 186 IPLGLPG--ARELDLGP 200 (207)
T ss_pred Cchhhcc--CcEEeecC
Confidence 9999987 88887743
No 257
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-35 Score=251.71 Aligned_cols=151 Identities=22% Similarity=0.228 Sum_probs=126.7
Q ss_pred CCcEEEEEcCCCCCccccC------------CceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCC
Q 024989 3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~ 63 (259)
+||+++|+||||||||||. ++|+|.++|.+. ++.++|++|+..+++.+|+.+++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~--- 108 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL--- 108 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh---
Confidence 7999999999999999992 589999999764 345899999888888888877653110
Q ss_pred HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE-Ee
Q 024989 64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY-AT 142 (259)
Q Consensus 64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii-~s 142 (259)
.. ..++++.+||+||+||++||+||+.+|++|||||||+|||+.+++.+++.|++++++.+.|+|+ ++
T Consensus 109 --~~---------~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 109 --RC---------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred --hh---------ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 00 0466789999999999999999999999999999999999999999999999987654666555 55
Q ss_pred CChhHHhccCCeEEEEeCCeEEEec
Q 024989 143 HIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|+.+++.++||++++|++|+++..|
T Consensus 178 h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 178 QASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCHHHHHHhCCeEEEEECCEEEecC
Confidence 6678999999999999999998653
No 258
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-35 Score=251.02 Aligned_cols=144 Identities=22% Similarity=0.290 Sum_probs=125.1
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeec----cccEEEecccCCCCccCcHHHHHhccCCCCHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~ 67 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++.+++.+|+.+++...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~-------- 103 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFS-------- 103 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHH--------
Confidence 699999999999999999 2699999999874 45699999988888888887655310
Q ss_pred HHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-
Q 024989 68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD- 146 (259)
Q Consensus 68 ~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~- 146 (259)
..+ .+|||||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||+++
T Consensus 104 -~~~-----------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~ 170 (192)
T cd03232 104 -ALL-----------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSA 170 (192)
T ss_pred -HHH-----------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChH
Confidence 000 19999999999999999999999999999999999999999999999865 5899999999998
Q ss_pred HHhccCCeEEEEeC-CeEEEec
Q 024989 147 GLENWPSHIVYVAH-GKLQLAM 167 (259)
Q Consensus 147 ~~~~~~drv~~l~~-G~i~~~g 167 (259)
++..+||++++|++ |++++.|
T Consensus 171 ~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 171 SIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHhhCCEEEEEcCCCeEEeCC
Confidence 47889999999999 9998754
No 259
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=282.76 Aligned_cols=169 Identities=19% Similarity=0.234 Sum_probs=139.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccC---CCCccCcHHHH-----H
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEV---PIQMDVSAEKM-----I 56 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~---~~~~~lt~~~~-----~ 56 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|+. .+++.+++.++ +
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 352 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNI 352 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhh
Confidence 799999999999999999 48999999997642 3489998874 35666665432 1
Q ss_pred h-c--cCCC-C----HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 57 F-G--VAGI-D----PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 57 ~-~--~~~~-~----~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
. . ..+. + .+.+.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~ 432 (491)
T PRK10982 353 RNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432 (491)
T ss_pred hhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH
Confidence 1 1 1121 1 13356788888883 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
+|.++++ .|.|||++|||++++..+|||+++|++|+++..++.++.
T Consensus 433 ~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 433 LIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999875 599999999999999999999999999999987766543
No 260
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=265.20 Aligned_cols=169 Identities=21% Similarity=0.237 Sum_probs=140.5
Q ss_pred CCcEEEEEcCCCCCccccC--------------CceEEEEcCeec----------cccEEEecccCCCCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTALT--------------SSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------------~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~~- 57 (259)
+||+++|+|+||||||||. ++|+|.++|.++ ++.++|++|++.+++ .|+.+++.
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~ 148 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISY 148 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHh
Confidence 7999999999999999992 599999999753 245899999887776 47776542
Q ss_pred ccC--------------CCC-----HHHHHHHHHHcCCC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 024989 58 GVA--------------GID-----PQRRAELIKVLDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112 (259)
Q Consensus 58 ~~~--------------~~~-----~~~~~~~l~~~~l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt 112 (259)
+.. +.. .+.+.++++.+++. .++++.+||||||||++||+||+++|++|||||||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPt 228 (305)
T PRK14264 149 GPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228 (305)
T ss_pred HHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 210 111 12356678888762 25678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE-EEEeCCeEEEecChhHHHH
Q 024989 113 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI-VYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 113 ~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv-~~l~~G~i~~~g~~~~~~~ 174 (259)
+|||+.++..++++|+++++ +.|||++||+++++..+||++ ++|++|+++..|+++++..
T Consensus 229 sgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 229 SALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred ccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence 99999999999999999864 489999999999999999996 5789999999999988754
No 261
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.2e-35 Score=313.23 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=152.5
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh---ccCCC
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF---GVAGI 62 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~ 62 (259)
-+||+++|+|||||||||| +++|+|.++|.++ ++.+||++|+..+++.+|+.+++. ..++.
T Consensus 954 ~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~ 1033 (2272)
T TIGR01257 954 YENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR 1033 (2272)
T ss_pred cCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC
Confidence 3799999999999999999 5899999999864 356999999998999999987652 22333
Q ss_pred C----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 63 D----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 63 ~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
+ .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++ + .|+
T Consensus 1034 ~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~-~g~ 1111 (2272)
T TIGR01257 1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-R-SGR 1111 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-h-CCC
Confidence 3 23467789999986 46789999999999999999999999999999999999999999999999998 3 489
Q ss_pred EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|||++||+++++..+||||++|++|+++..|+++++.+..
T Consensus 1112 TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1112 TIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999999999999999999999999987643
No 262
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.8e-35 Score=258.25 Aligned_cols=168 Identities=15% Similarity=0.189 Sum_probs=135.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+++. |+.+++.........
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~ 124 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPECKCTDD 124 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCCCCCHH
Confidence 799999999999999999 4899999999764 3468999998877654 666554321111222
Q ss_pred HHHHHHHH---------c--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKV---------L--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~---------~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
...++++. + ++. .+.++.+||+||+||++|||||+.+|++|||||||+|||+.++..+++.++++.
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~- 203 (257)
T cd03288 125 RLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF- 203 (257)
T ss_pred HHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-
Confidence 23333332 2 222 234568999999999999999999999999999999999999999999998863
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.+.|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 204 -~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 204 -ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred -CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 38999999999999986 99999999999999999888764
No 263
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-35 Score=253.63 Aligned_cols=156 Identities=26% Similarity=0.346 Sum_probs=131.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEc--Ce--ec------------cccEEEecccCCCCccCcHHHHHh
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYL--GG--EW------------RREVAFAGFEVPIQMDVSAEKMIF 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~--G~--~~------------~~~i~~v~~~~~~~~~lt~~~~~~ 57 (259)
+||+++|+|||||||||| +++|+|.++ |. +. ++.++|++|++.+++.+|+.+++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 112 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVA 112 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHH
Confidence 799999999999999999 489999998 42 21 235899999988888888877543
Q ss_pred c---cCCCC----HHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 58 G---VAGID----PQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 58 ~---~~~~~----~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
. ..+.. .+++.++++.+++.. +.++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 192 (224)
T TIGR02324 113 EPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192 (224)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1 12222 234567889898852 5678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 128 RKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
+++++ .|+|||++||+++++..+||+++.+.
T Consensus 193 ~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 193 AEAKA-RGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99865 58999999999999999999998763
No 264
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.3e-35 Score=255.55 Aligned_cols=158 Identities=23% Similarity=0.311 Sum_probs=129.7
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCC
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGID 63 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~ 63 (259)
-+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. ......
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~ 116 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCS 116 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCC
Confidence 3799999999999999999 4899999999753 346999999877665 47766553 222111
Q ss_pred HH----H-----HHHHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 64 PQ----R-----RAELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 64 ~~----~-----~~~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.. . ..++++.+ ++. .+.++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++
T Consensus 117 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 196 (226)
T cd03248 117 FECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW 196 (226)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11 1 23566777 554 36678999999999999999999999999999999999999999999999987
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
+ + +.|||++||+++++.. ||++++|++|++
T Consensus 197 ~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 197 P-E-RRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred c-C-CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 5 3 6899999999999975 999999999874
No 265
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.1e-36 Score=259.70 Aligned_cols=174 Identities=32% Similarity=0.496 Sum_probs=145.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-------ccEEEec-ccCCCCccCcHH------HHHhcc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-------REVAFAG-FEVPIQMDVSAE------KMIFGV 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-------~~i~~v~-~~~~~~~~lt~~------~~~~~~ 59 (259)
+|++++.+|+||+||||+ |++|.|.++|.+.. ++++++. |...+..++.+. ..++..
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~I 128 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEI 128 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhC
Confidence 799999999999999998 69999999998642 3466653 444443333332 223322
Q ss_pred CC-CCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 60 AG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 60 ~~-~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
.. .-.++.+.+.+.++++ .+++++.||-|||+|+.||.+|+|+|++|+|||||-|||...+..+.++|++++++++.
T Consensus 129 pd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~a 208 (325)
T COG4586 129 PDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208 (325)
T ss_pred CHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCc
Confidence 21 1134566788888887 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
||+++||+++.+..+||||++|+.|+++.+|+.+++.+..
T Consensus 209 TVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred eEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999999999999999999999987653
No 266
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.6e-35 Score=289.77 Aligned_cols=166 Identities=23% Similarity=0.276 Sum_probs=141.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+++++ ++.. .+.
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-~~~ 555 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-LTL 555 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC-CCH
Confidence 799999999999999999 5899999999864 4679999999988866 566665 3433 566
Q ss_pred HHHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. .+. ...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++
T Consensus 556 e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~- 634 (686)
T TIGR03797 556 DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL- 634 (686)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-
Confidence 7777777777652 122 23579999999999999999999999999999999999999999998764
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 635 ---~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 635 ---KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred ---CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 5799999999998876 999999999999999999998753
No 267
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-35 Score=282.34 Aligned_cols=165 Identities=16% Similarity=0.223 Sum_probs=141.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCC--CCccCcHHHHHhccC--CCCHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGVA--GIDPQRRAE 69 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~--~~~~lt~~~~~~~~~--~~~~~~~~~ 69 (259)
+||+++|+|||||||||| +++|+|.++|. +.++|++|++. +++.+|+.+++.... ....+++.+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 420 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG 420 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHH
Confidence 799999999999999999 48999999874 46999999864 455678877653221 123455778
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++ +.|||++|||++
T Consensus 421 ~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~ 496 (530)
T PRK15064 421 TLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE 496 (530)
T ss_pred HHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence 99999983 36789999999999999999999999999999999999999999999999864 359999999999
Q ss_pred HHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989 147 GLENWPSHIVYVAHGKLQ-LAMPMDKVKE 174 (259)
Q Consensus 147 ~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 174 (259)
++..+||++++|++|+++ ..|+++++.+
T Consensus 497 ~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 497 FVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999998 7788877654
No 268
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1e-34 Score=283.94 Aligned_cols=169 Identities=16% Similarity=0.216 Sum_probs=143.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+|+. |+.+++......+.+
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~ 444 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDISEE 444 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCCCHH
Confidence 799999999999999999 5899999999864 4679999999999887 566655322244566
Q ss_pred HHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++.+++. .+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.
T Consensus 445 ~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~- 523 (592)
T PRK10790 445 QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR- 523 (592)
T ss_pred HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-
Confidence 677777777652 12 2335799999999999999999999999999999999999999999998864
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 524 -~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 524 -EHTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred -CCCEEEEEecchHHHHh-CCEEEEEECCEEEEEcCHHHHHhC
Confidence 36899999999988775 999999999999999999998754
No 269
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=280.47 Aligned_cols=165 Identities=21% Similarity=0.224 Sum_probs=139.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-cc-------------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GV------------- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~------------- 59 (259)
+||+++|+|||||||||| +++|+|.++|. ..++|++|++.+++.+|+.+++. +.
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 102 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRI 102 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 699999999999999999 48999999874 45999999888888888765432 10
Q ss_pred ------------------------CCCC-HHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 024989 60 ------------------------AGID-PQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 111 (259)
Q Consensus 60 ------------------------~~~~-~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP 111 (259)
.+.. .+++.++++.+++.. ++++.+|||||||||+||+||+.+|++||||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEP 182 (530)
T PRK15064 103 YALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEP 182 (530)
T ss_pred hcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0001 234567888899852 357899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989 112 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE 174 (259)
Q Consensus 112 t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 174 (259)
|+|||+.++..+.++|.+ .|.|||+||||++++.++||++++|++|+++ ..|+++++.+
T Consensus 183 t~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 183 TNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred CcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999999863 4899999999999999999999999999994 7899887764
No 270
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.4e-35 Score=248.14 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=123.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|||||||||| +++|+|.++| .++|++|++.++ ..|+.+++........+...+.++.
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~ 103 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----SIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKA 103 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----EEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHH
Confidence 799999999999999999 5899999998 699999998876 4577776543222233333333433
Q ss_pred cCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEE
Q 024989 74 LDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATII 139 (259)
Q Consensus 74 ~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tii 139 (259)
+++ . .+.++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+++ ++++..+ .|.|||
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi 182 (204)
T cd03250 104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRI 182 (204)
T ss_pred cCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEE
Confidence 332 1 234578999999999999999999999999999999999999999998 4666654 489999
Q ss_pred EEeCChhHHhccCCeEEEEeCCe
Q 024989 140 YATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~ 162 (259)
++||+++.+.. ||++++|++|+
T Consensus 183 ~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 183 LVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred EEeCCHHHHhh-CCEEEEEeCCC
Confidence 99999999998 99999999985
No 271
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.3e-35 Score=248.43 Aligned_cols=143 Identities=22% Similarity=0.356 Sum_probs=124.1
Q ss_pred CCcEEEEEcCCCCCcccc-------C----CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL-------T----SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-------~----~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+||+++|+|||||||||| . ++|+|.++|+++ ++.++|++|++.+++.+|+.+++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~------- 106 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFA------- 106 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHH-------
Confidence 699999999999999999 2 589999999864 45699999998888778877644210
Q ss_pred HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
..+ .+|||||+||++|||||+.+|+++||||||+|||+.+++.+++.|+++.+ .|+|||++||+++
T Consensus 107 -----~~~--------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~ 172 (194)
T cd03213 107 -----AKL--------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPS 172 (194)
T ss_pred -----HHh--------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch
Confidence 001 19999999999999999999999999999999999999999999999865 4999999999996
Q ss_pred -HHhccCCeEEEEeCCeEEEe
Q 024989 147 -GLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 147 -~~~~~~drv~~l~~G~i~~~ 166 (259)
++..+||++++|++|+++..
T Consensus 173 ~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 173 SEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHhcCEEEEEeCCEEEec
Confidence 78899999999999999764
No 272
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.7e-35 Score=290.24 Aligned_cols=167 Identities=21% Similarity=0.241 Sum_probs=141.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+++++. +....+.
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~~~~ 582 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPD 582 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCCCCCH
Confidence 799999999999999999 5899999999864 5679999999888765 6676663 3333456
Q ss_pred HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. .+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 583 ~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~-- 660 (710)
T TIGR03796 583 ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR-- 660 (710)
T ss_pred HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--
Confidence 6666677666542 12 23467999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 661 --~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 661 --RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred --cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 37999999999998876 999999999999999999998753
No 273
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-34 Score=249.92 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=126.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHhccCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIFGVAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~~~~~ 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.++ ..|+.+++.....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~ 104 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP 104 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc
Confidence 799999999999999999 4899999999642 24589999988776 5677765532212
Q ss_pred CCHHHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH--H
Q 024989 62 IDPQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR--F 126 (259)
Q Consensus 62 ~~~~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~--~ 126 (259)
...+...++++.+++. .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++ +
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~l 184 (218)
T cd03290 105 FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184 (218)
T ss_pred CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 2333344555555542 134678999999999999999999999999999999999999999998 6
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~ 162 (259)
++.+. +.|.|||++||+++++. .||++++|++|+
T Consensus 185 l~~~~-~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 185 LKFLQ-DDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHh-cCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 66554 46899999999999986 599999999884
No 274
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.3e-35 Score=283.84 Aligned_cols=169 Identities=21% Similarity=0.334 Sum_probs=145.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+.+++ ++....+.
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~ 443 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPNASD 443 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCccCH
Confidence 799999999999999999 5899999999864 4579999999888765 666665 44434566
Q ss_pred HHHHHHHHHcCCCc--c----------ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDIDL--S----------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 65 ~~~~~~l~~~~l~~--~----------~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
+++.++++.+++.. . ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++.
T Consensus 444 ~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~- 522 (574)
T PRK11160 444 EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA- 522 (574)
T ss_pred HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-
Confidence 77788888887631 1 1346799999999999999999999999999999999999999999999874
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 523 -~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 523 -QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred -CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhc
Confidence 48999999999998876 999999999999999999998754
No 275
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.6e-35 Score=283.59 Aligned_cols=169 Identities=22% Similarity=0.315 Sum_probs=143.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.+++++|++.+|. -|+.+++ ++....+.
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~ 432 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDATD 432 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCCH
Confidence 799999999999999999 4799999999764 577999999999988 4566554 55554556
Q ss_pred HHHHHHHHHcCC-------C--ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-------D--LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-------~--~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++ + .+. ....||||||||++||||++.+|++|||||||++||+.+...+.+.+.++.
T Consensus 433 eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 433 EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 666665555432 1 122 345799999999999999999999999999999999999999999999765
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+|+|+|+++|.++.+.. ||+|++|++|++++.|+.+++...
T Consensus 513 --~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 513 --KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred --cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence 46899999999999988 999999999999999999999875
No 276
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-35 Score=274.30 Aligned_cols=176 Identities=27% Similarity=0.361 Sum_probs=152.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-ccC---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GVA--- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~~--- 60 (259)
+||+++++|.||+||||| +|+|+|.++|+... ..|..+.|+..+.+++|+.++++ +..
T Consensus 33 ~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~ 112 (500)
T COG1129 33 PGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR 112 (500)
T ss_pred CceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence 799999999999999999 69999999998642 34889999999999999987664 321
Q ss_pred --C-CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 61 --G-IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 61 --~-~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+ +++ ++..++++.+++. ++.++.+||.||||.|+|||||..++++|||||||+.|+....+.++++++++.
T Consensus 113 ~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk 192 (500)
T COG1129 113 RFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192 (500)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1 343 3456788888874 678899999999999999999999999999999999999999999999999987
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC-hhHHHHHhhhh
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP-MDKVKEASKLS 179 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~-~~~~~~~~~~~ 179 (259)
+ +|.+||+|||.|+++.++||||.||++|+.+.+.+ ..++.......
T Consensus 193 ~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~ 240 (500)
T COG1129 193 A-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVR 240 (500)
T ss_pred h-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHH
Confidence 5 69999999999999999999999999999999988 46655443333
No 277
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-35 Score=280.83 Aligned_cols=171 Identities=22% Similarity=0.329 Sum_probs=145.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++++||||+||||+ |++|+|.++|.++ +++||+|+|+|.+|.....+++.+|....+.+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDE 572 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHH
Confidence 699999999999999999 6999999999874 57899999999998765445566777655656
Q ss_pred HHHHHHHHcC-------CC------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLD-------ID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~-------l~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++..+.+..+ ++ -..+-.+||||||||++|||||+.+|.||||||.|++||.++...+.+.|.+..+
T Consensus 573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 5554444322 11 1234568999999999999999999999999999999999999999999988753
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
+.|||+|.|.++.+++ ||+|+++++|++++.|+.+|+.+..
T Consensus 653 --~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 653 --GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred --CCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCc
Confidence 6999999999999987 9999999999999999999998754
No 278
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=282.47 Aligned_cols=169 Identities=21% Similarity=0.283 Sum_probs=142.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCC-CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAG-ID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~-~~ 63 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+|+. |+.+++ ++... .+
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~ 446 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTEQYS 446 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCCCCCC
Confidence 799999999999999999 5899999999864 4679999999888865 566655 34332 45
Q ss_pred HHHHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 64 PQRRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 64 ~~~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.+++.++++..++. .+. .-.+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++
T Consensus 447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~ 526 (582)
T PRK11176 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 66677777766542 122 23569999999999999999999999999999999999999999999886
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 527 ~--~~~tvI~VtHr~~~~~~-~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 527 Q--KNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred h--CCCEEEEEecchHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 4 37999999999987765 999999999999999999998754
No 279
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=8.4e-35 Score=245.84 Aligned_cols=145 Identities=26% Similarity=0.340 Sum_probs=119.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++. .+...|+.+++. . .
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~ 96 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLN 96 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHH
Confidence 799999999999999999 4899999999764 235899999863 223457766542 2 1
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++++
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~- 175 (190)
T TIGR01166 97 LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA- 175 (190)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-
Confidence 22222 3456788888885 4678899999999999999999999999999999999999999999999999865
Q ss_pred cCcEEEEEeCChhHH
Q 024989 134 RGATIIYATHIFDGL 148 (259)
Q Consensus 134 ~g~tiii~sH~~~~~ 148 (259)
.|+|||++||+++++
T Consensus 176 ~~~tili~sH~~~~~ 190 (190)
T TIGR01166 176 EGMTVVISTHDVDLA 190 (190)
T ss_pred cCCEEEEEeeccccC
Confidence 589999999998753
No 280
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.8e-34 Score=287.06 Aligned_cols=168 Identities=24% Similarity=0.325 Sum_probs=142.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+.+++. +....+.
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~~~~~ 568 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAPYADD 568 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCCCCCH
Confidence 799999999999999999 5899999999764 5679999999988875 6766654 4333556
Q ss_pred HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. .+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.
T Consensus 569 ~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~ 648 (694)
T TIGR03375 569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL 648 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 6666666666542 11 2345799999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 649 --~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 649 --AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred --CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHH
Confidence 3799999999999875 599999999999999999998865
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3e-34 Score=278.98 Aligned_cols=165 Identities=25% Similarity=0.257 Sum_probs=139.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC------------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA------------ 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~------------ 60 (259)
+||+++|+|||||||||| +++|+|.+++. ..++|++|++.+++.+|+.+++. +..
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 108 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEI 108 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 799999999999999999 48999999753 46999999988888888876542 110
Q ss_pred ----CCC--------------------------HHHHHHHHHHcCCC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEe
Q 024989 61 ----GID--------------------------PQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 109 (259)
Q Consensus 61 ----~~~--------------------------~~~~~~~l~~~~l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD 109 (259)
... .+++.++++.+++. .++++.+|||||||||+||+||+.+|++||||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD 188 (556)
T PRK11819 109 YAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188 (556)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 000 12355678888885 46789999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989 110 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE 174 (259)
Q Consensus 110 EPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 174 (259)
|||++||+.++..+.++|+++ +.|||+|||+++++..+||+|++|++|+++ ..|+.+++.+
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 189 EPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999999999875 249999999999999999999999999986 7788887654
No 282
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.2e-34 Score=286.23 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCCCCccccC---------C--ceEEEEcCeec----cccEEEecccCCCCccCcHHHHHh-c--c--C-C
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S--SGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIF-G--V--A-G 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~--~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~-~--~--~-~ 61 (259)
+||+++|+||||||||||. + +|+|.++|++. .+.++|++|+..+++.+|+.+++. . . . .
T Consensus 93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~ 172 (659)
T PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS 172 (659)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCC
Confidence 6999999999999999992 2 89999999864 356999999998888999987652 1 1 1 1
Q ss_pred CCH----HHHHHHHHHcCCCc-------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 62 IDP----QRRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~~-------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.+. ++++++++.+++.. ++.+++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 173 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l 252 (659)
T PLN03211 173 LTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252 (659)
T ss_pred CCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 222 23567889999852 2356789999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEeCChh-HHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 131 CEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++ .|+|||++||+++ ++.++||++++|++|+++..|+.+++.+
T Consensus 253 ~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 253 AQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred Hh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 76 5999999999998 5889999999999999999999988764
No 283
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-34 Score=273.19 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=139.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc---cCCCCH----HH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGIDP----QR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~~~----~~ 66 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++++...+++.+|+.+++.. ..+.+. +.
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~ 123 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI 123 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence 799999999999999999 4899999999752 22223345566788765421 123332 23
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+.++++.+++. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++ .|.|||++||+
T Consensus 124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHd 202 (549)
T PRK13545 124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHS 202 (549)
T ss_pred HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence 45688888885 4678999999999999999999999999999999999999999999999999864 58999999999
Q ss_pred hhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 145 FDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
++++..+||++++|++|+++..|+++++...
T Consensus 203 l~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 203 LSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999887654
No 284
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.1e-34 Score=248.24 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=133.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEE-EcCeeccccEEEecccCCCCccCcHHHHHh---ccCCCCHHHH-H
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-YLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDPQRR-A 68 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~---~~~~~~~~~~-~ 68 (259)
+||+++|+|||||||||| +++|+|. ++|..+ .+++.+.+++.+|+.+++. ..++.+.++. .
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-----~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 86 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-----PLGANSFILPGLTGEENARMMASLYGLDGDEFSH 86 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-----ccccccccCCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence 799999999999999999 4899997 666532 1334556778888887653 2234443333 3
Q ss_pred HHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 69 ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 69 ~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
.+.+.+++. .++++.+||+|||||++||+||+.+|+++||||||+++|+.++..+++.+.+..+ +.|+|++||+++
T Consensus 87 ~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~~ 164 (213)
T PRK15177 87 FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNPR 164 (213)
T ss_pred HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCHH
Confidence 344555664 4678899999999999999999999999999999999999999999998866543 468999999999
Q ss_pred HHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 147 GLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 147 ~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++..+||++++|++|+++..++.++...
T Consensus 165 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 165 LIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 9999999999999999999998887753
No 285
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-34 Score=282.67 Aligned_cols=161 Identities=21% Similarity=0.326 Sum_probs=139.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-CCCC-HHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGID-PQRRAELI 71 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~-~~~~~~~l 71 (259)
+||+++|+|||||||||| +++|+|.++ ..++|++|+..+++.+|+.+++... .... .....+++
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L 438 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII 438 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence 799999999999999999 489999886 3699999998777888988765421 1112 23457889
Q ss_pred HHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 72 KVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 72 ~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
+.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||++++.
T Consensus 439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 439 KPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred HHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999985 478899999999999999999999999999999999999999999999999998766899999999999999
Q ss_pred ccCCeEEEEeCCeEEEecCh
Q 024989 150 NWPSHIVYVAHGKLQLAMPM 169 (259)
Q Consensus 150 ~~~drv~~l~~G~i~~~g~~ 169 (259)
.+|||+++|+ |++...|..
T Consensus 519 ~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 519 YISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HhCCEEEEEc-Ccceeeeec
Confidence 9999999996 477777763
No 286
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=9.4e-35 Score=270.32 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=147.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHH-hccC---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMI-FGVA--- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~-~~~~--- 60 (259)
+||+.+|+|.||+||||| ||+|+|.++|++. +..||+|.|++.+++.+|+.|++ .+..
T Consensus 29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~ 108 (501)
T COG3845 29 KGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108 (501)
T ss_pred CCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence 799999999999999999 6999999999864 34599999999999999997765 4432
Q ss_pred --CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 61 --GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 61 --~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+ .+++.++.+.+|++ ++.++.+||-|+||||.|.+||..+|++|||||||+-|-|...+++++.++.+.+
T Consensus 109 ~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~ 188 (501)
T COG3845 109 GGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188 (501)
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 122 24567888999985 6789999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
.|+|||+|||.++|+.++|||+.||++|+++...+
T Consensus 189 -~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 189 -EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred -CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 59999999999999999999999999999987766
No 287
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-35 Score=274.23 Aligned_cols=169 Identities=22% Similarity=0.328 Sum_probs=145.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
.||-++|+|+|||||||| +++|+|.++|.++ ++.+++++|.+.+|... .++++ ......+.
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~T-lr~NL~lA~~~AsD 441 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT-LRDNLRLANPDASD 441 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHH-HHHHHhhcCCCCCH
Confidence 699999999999999999 5899999999653 45689999998887654 55544 44445566
Q ss_pred HHHHHHHHHcCCC---c----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---L----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---~----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
++..++++.+++. . +..-..||||||||++|||+|+++.+++||||||.|||+.+.+++++.|.+.+
T Consensus 442 Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~ 521 (573)
T COG4987 442 EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521 (573)
T ss_pred HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh
Confidence 7788888888873 1 12345799999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+|+|+|++||++..++. ||||++|++|+++.+|+..++..+
T Consensus 522 --~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 522 --EGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred --cCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhcc
Confidence 48999999999999987 899999999999999999998763
No 288
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-34 Score=293.31 Aligned_cols=170 Identities=23% Similarity=0.324 Sum_probs=143.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHH-HHhccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEK-MIFGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~-~~~~~~~~~~ 64 (259)
+|+.++|+|||||||||+ |++|+|.++|.++ +.+||.|.|+|.+|. .|+.+ ..++....+.
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~ 456 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATR 456 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcccH
Confidence 699999999999999999 6999999999864 567999999986665 45555 5567655555
Q ss_pred HHHHHHHHHcCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++.+..+. + ...+-.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+..
T Consensus 457 ~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~ 536 (1228)
T KOG0055|consen 457 EEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS 536 (1228)
T ss_pred HHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh
Confidence 555555544332 1 123345799999999999999999999999999999999999999999998753
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
.|.|.|+++|+++.+.+ +|+|++|++|+|++.|+.+|+....
T Consensus 537 --~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 537 --KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred --cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhcc
Confidence 58999999999999998 9999999999999999999998754
No 289
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.9e-35 Score=279.82 Aligned_cols=165 Identities=21% Similarity=0.343 Sum_probs=135.3
Q ss_pred CCcEEEEEcCCCCCcccc--------C--CceEEEEcCeec---------cccEEEecccCCCCc--cCcHHHHHh-cc-
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T--SSGDLSYLGGEW---------RREVAFAGFEVPIQM--DVSAEKMIF-GV- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~--~~G~I~~~G~~~---------~~~i~~v~~~~~~~~--~lt~~~~~~-~~- 59 (259)
+||+++|+|||||||||| + ++|+|.++|.+. ++.++|++|++.++. ..++.+++. ..
T Consensus 285 ~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK10938 285 PGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF 364 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence 799999999999999999 2 489999998642 345899998765433 346666542 11
Q ss_pred -----CC-CCH---HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 60 -----AG-IDP---QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 60 -----~~-~~~---~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
.. ... +++.++++.+++.. ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L 444 (490)
T PRK10938 365 DSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFV 444 (490)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 11 122 34678899999853 5678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhc-cCCeEEEEeCCeEEEec
Q 024989 128 RKECEERGATIIYATHIFDGLEN-WPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~-~~drv~~l~~G~i~~~g 167 (259)
++++++.+.|||++|||++++.. +||++++|++|+++...
T Consensus 445 ~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 445 DVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99876534579999999999987 69999999999988754
No 290
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-34 Score=238.54 Aligned_cols=120 Identities=23% Similarity=0.358 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccc---------cEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR---------EVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~---------~i~~v~~~~~~~~~lt~~~~~~~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++.. .++|++|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------------------- 82 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------------------- 82 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------------------
Confidence 799999999999999999 489999999875321 1233222
Q ss_pred HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
||+||+||++|||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++||+
T Consensus 83 --------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~ 141 (163)
T cd03216 83 --------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHR 141 (163)
T ss_pred --------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999865 48999999999
Q ss_pred hhHHhccCCeEEEEeCCeEEE
Q 024989 145 FDGLENWPSHIVYVAHGKLQL 165 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~G~i~~ 165 (259)
++++.++||++++|++|++++
T Consensus 142 ~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 142 LDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999875
No 291
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.5e-34 Score=254.68 Aligned_cols=163 Identities=21% Similarity=0.245 Sum_probs=130.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|+|||||||| +++|+|.++| .++|++|++.+++. |+.+++.........+..++++.
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-----~i~yv~q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~ 135 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----RISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKA 135 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----EEEEEeCccccccc-CHHHHhhcccccCHHHHHHHHHH
Confidence 799999999999999999 4899999988 49999998877764 77665432111122223333443
Q ss_pred cCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEE
Q 024989 74 LDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATII 139 (259)
Q Consensus 74 ~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l-~~~~~~~g~tii 139 (259)
+++. .+.++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.+ .++ . .+.|||
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~-~~~tIi 213 (282)
T cd03291 136 CQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-M-ANKTRI 213 (282)
T ss_pred hCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-h-CCCEEE
Confidence 3331 12345799999999999999999999999999999999999999998865 444 3 378999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++||+++++. .||++++|++|+++..|+++++..
T Consensus 214 iisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 214 LVTSKMEHLK-KADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred EEeCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999985 799999999999999999988764
No 292
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3e-34 Score=285.95 Aligned_cols=168 Identities=22% Similarity=0.301 Sum_probs=141.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c-cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G-VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~-~~~~~ 63 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+.+++. + ....+
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~ 577 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVS 577 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCCCC
Confidence 799999999999999999 5899999999864 5679999999988866 6666553 4 23455
Q ss_pred HHHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 64 PQRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 64 ~~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.+++.++++..++. .+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++
T Consensus 578 ~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 578 QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 66666666665541 12 234679999999999999999999999999999999999999999999864
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 658 ---~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 658 ---QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred ---cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 3789999999999875 5999999999999999999998653
No 293
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.3e-34 Score=279.40 Aligned_cols=169 Identities=22% Similarity=0.285 Sum_probs=140.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+++++ ++....+.
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~d 438 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPDATD 438 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCCCCCH
Confidence 799999999999999999 5899999999754 4679999999988865 566655 34333455
Q ss_pred HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++.+++. .+ .....||||||||++|||||+++|+++||||||++||+.+.+.+++.|.+..
T Consensus 439 ~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~ 518 (588)
T PRK13657 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM 518 (588)
T ss_pred HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 6666666655541 12 2235799999999999999999999999999999999999999999998763
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|+|++||+++.+. .||+|++|++|+++..|+.+++.+.
T Consensus 519 --~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 519 --KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred --cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence 4799999999998775 5999999999999999999988653
No 294
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-35 Score=239.58 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=144.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhcc----CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGV----AG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~----~~ 61 (259)
+||+.+|+|||||||||| +|+|++.+.|+++ +.+|+|+.|.+.+|++...+++++.+ ..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr 107 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR 107 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccC
Confidence 799999999999999999 5999999999864 57799999999999886545555432 23
Q ss_pred CCHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 62 IDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 62 ~~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.++..+..+++.++++ +++++.+||||++||++|+|-|..-|++|+|||||++||+.+++.+-++|.++.+++..++
T Consensus 108 ~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv 187 (223)
T COG4619 108 PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV 187 (223)
T ss_pred CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEE
Confidence 4667778899999986 5788999999999999999999999999999999999999999999999999987789999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeE
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
+.+|||-+++.+.+|+++-+..|.+
T Consensus 188 ~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 188 LWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred EEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999999999876
No 295
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.3e-34 Score=285.81 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=138.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ +++++|++|++.+|.. |+++++ ++....+.
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~~~~ 584 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPD 584 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCCCCH
Confidence 799999999999999999 5899999999864 4679999999888765 566655 45444455
Q ss_pred HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. .+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+ .. .
T Consensus 585 e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~ 661 (711)
T TIGR00958 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--S 661 (711)
T ss_pred HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--c
Confidence 6666777666542 12 2345799999999999999999999999999999999999988888 22 2
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
..++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 662 -~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 662 -RASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred -cCCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHHhC
Confidence 258999999999998765 999999999999999999998753
No 296
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.2e-34 Score=243.89 Aligned_cols=153 Identities=23% Similarity=0.300 Sum_probs=127.4
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhc---cCCC
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFG---VAGI 62 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~---~~~~ 62 (259)
-+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|+..+++.+|+.+++.. ....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 103 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGG 103 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCC
Confidence 3799999999999999999 4899999999763 3568999988777777888765421 2222
Q ss_pred CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 63 DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 63 ~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
..+++.++++.+++. .++++.+||||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||+
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~ 182 (198)
T TIGR01189 104 AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLL 182 (198)
T ss_pred cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 234567889999985 4678899999999999999999999999999999999999999999999999865 5899999
Q ss_pred EeCChhHHhccCCeEEE
Q 024989 141 ATHIFDGLENWPSHIVY 157 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~ 157 (259)
+||+...+ .|++++.
T Consensus 183 ~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 183 TTHQDLGL--VEARELR 197 (198)
T ss_pred EEcccccc--cceEEee
Confidence 99997544 4677654
No 297
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=260.68 Aligned_cols=177 Identities=24% Similarity=0.329 Sum_probs=148.9
Q ss_pred CCcEEEEEcCCCCCcccc--------C------CceEEEEcCeecc------------ccEEEecccCC--CCccCcHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL--------T------SSGDLSYLGGEWR------------REVAFAGFEVP--IQMDVSAEK 54 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~------~~G~I~~~G~~~~------------~~i~~v~~~~~--~~~~lt~~~ 54 (259)
+||.++|+|.||||||.. + -+|+|.++|.++- .+|++++|++. +.|-.|+..
T Consensus 35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~ 114 (534)
T COG4172 35 AGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGK 114 (534)
T ss_pred CCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHH
Confidence 699999999999999954 2 4899999998741 35999999874 455556543
Q ss_pred HH----hccCCCC----HHHHHHHHHHcCCC-----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989 55 MI----FGVAGID----PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 121 (259)
Q Consensus 55 ~~----~~~~~~~----~~~~~~~l~~~~l~-----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~ 121 (259)
-+ ..-.+.+ ++++.++++.+|+. .+.++++|||||||||.||.||+++|++||.||||++||...+.
T Consensus 115 Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQa 194 (534)
T COG4172 115 QLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA 194 (534)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHH
Confidence 22 1112322 24456788888985 35679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989 122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179 (259)
Q Consensus 122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~ 179 (259)
+++++|+++.++.|+++++||||+..+.+++|||.||.+|++++.|+.++++......
T Consensus 195 QIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHp 252 (534)
T COG4172 195 QILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHP 252 (534)
T ss_pred HHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCCh
Confidence 9999999999999999999999999999999999999999999999999998765443
No 298
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=269.89 Aligned_cols=169 Identities=21% Similarity=0.295 Sum_probs=149.9
Q ss_pred CCcEEEEEcCCCCCccccC--------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+||-|+|+|+|||||||+. ++|+|.++|.++ |+.|||+||+..+|.+...++..+|....+.++
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~ee 456 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEE 456 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHH
Confidence 7999999999999999994 899999999875 567999999999998876667777776667788
Q ss_pred HHHHHHHcCCC-----c--------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 67 RAELIKVLDID-----L--------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 67 ~~~~l~~~~l~-----~--------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
+.++.+.+++. . ..+-..|||||||||+||||++.+|+++++||||++||..+.+++++.+.+. .
T Consensus 457 V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~ 534 (591)
T KOG0057|consen 457 VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--M 534 (591)
T ss_pred HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--c
Confidence 88888888873 1 1234579999999999999999999999999999999999999999999984 3
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.|+|+|+|-|+++.+.. ||+|+++++|++...|+.+++..
T Consensus 535 ~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 535 SGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence 58999999999999987 89999999999999999999876
No 299
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-34 Score=244.30 Aligned_cols=152 Identities=17% Similarity=0.281 Sum_probs=128.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-cc-CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+++.+|+.+++. .. .....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~ 105 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGA 105 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcch
Confidence 799999999999999999 5899999999754 346899999887878888876543 21 11123
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
..+.++++.+++. .++++.+||+||+||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 184 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTS 184 (200)
T ss_pred HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 4567889998885 3667899999999999999999999999999999999999999999999999754 589999999
Q ss_pred CChhHHhccCCeEE
Q 024989 143 HIFDGLENWPSHIV 156 (259)
Q Consensus 143 H~~~~~~~~~drv~ 156 (259)
|+.+.+.. ||..+
T Consensus 185 h~~~~~~~-~d~~~ 197 (200)
T PRK13540 185 HQDLPLNK-ADYEE 197 (200)
T ss_pred CCchhccc-cchhh
Confidence 99998876 88754
No 300
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.9e-34 Score=275.27 Aligned_cols=169 Identities=22% Similarity=0.279 Sum_probs=138.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++. |+.+++. .....+.
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~ 421 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADP 421 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCCCCH
Confidence 799999999999999999 5899999999764 4579999999888876 7777664 2222344
Q ss_pred HHHHHHHHHcC-----------CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLD-----------ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~-----------l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
++..+.++..+ ++ ......+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++.
T Consensus 422 ~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 501 (544)
T TIGR01842 422 EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK 501 (544)
T ss_pred HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 44443333332 21 234567899999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
. .|+|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 502 ~-~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 502 A-RGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred h-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHhh
Confidence 3 5899999999998765 699999999999999999887743
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-34 Score=238.68 Aligned_cols=128 Identities=28% Similarity=0.424 Sum_probs=112.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|||||||||| +++|+|.++|.+. ++.++|++|++.+++ .++.+++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l--------- 96 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI--------- 96 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh---------
Confidence 799999999999999999 4899999999754 245899988865554 3544322
Q ss_pred HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
||+|||||++||+||+.+|++|||||||+|||+.++..++++|.++. + ++|||++||++
T Consensus 97 -------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~ 155 (171)
T cd03228 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRL 155 (171)
T ss_pred -------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999874 3 69999999999
Q ss_pred hHHhccCCeEEEEeCCe
Q 024989 146 DGLENWPSHIVYVAHGK 162 (259)
Q Consensus 146 ~~~~~~~drv~~l~~G~ 162 (259)
+++.. ||++++|++|+
T Consensus 156 ~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 156 STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHh-CCEEEEEcCCC
Confidence 99987 99999999885
No 302
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.1e-34 Score=276.61 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=141.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+++++. +....+.
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~ 418 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPDATQ 418 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCCCCH
Confidence 799999999999999999 5899999999864 4579999999888865 7776653 3333455
Q ss_pred HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
++..++++..++. ......+||||||||++|||||+++|++|||||||++||+.+.+.+++.|+++.
T Consensus 419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498 (569)
T ss_pred HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 5566666555431 123456899999999999999999999999999999999999999999998864
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 499 --~~~tii~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 499 --EGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred --CCCEEEEEecchhHHHc-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 48999999999988765 999999999999999999988754
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.3e-34 Score=275.33 Aligned_cols=166 Identities=25% Similarity=0.250 Sum_probs=138.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC------------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA------------ 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~------------ 60 (259)
+||+++|+|||||||||| +++|+|.+++. ..++|++|++.+++.+|+.+++. +..
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~ 106 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG---IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEI 106 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 799999999999999999 48999999763 46999999988888888876542 110
Q ss_pred ----CC-CH-------------------------HHHHHHHHHcCCC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEe
Q 024989 61 ----GI-DP-------------------------QRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 109 (259)
Q Consensus 61 ----~~-~~-------------------------~~~~~~l~~~~l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD 109 (259)
.. .. .++.++++.+++. .++++.+|||||||||+||+||+.+|++||||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD 186 (552)
T TIGR03719 107 SAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186 (552)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 00 1234566777774 46788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHHH
Q 024989 110 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKEA 175 (259)
Q Consensus 110 EPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~~ 175 (259)
|||++||+.++..+.++|+++ +.|||+|||+++++..+||++++|++|+++ ..|+.+++.+.
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 187 EPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred CCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 999999999999999999764 359999999999999999999999999976 67888876553
No 304
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.2e-33 Score=276.16 Aligned_cols=169 Identities=22% Similarity=0.290 Sum_probs=139.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.+. ++.++|++|++.++. .|+.+++. +....+.
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~ 438 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREGATD 438 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCCCCH
Confidence 799999999999999999 5899999999754 457999999988776 46766553 3333344
Q ss_pred HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
++..++++..++ + ......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.
T Consensus 439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~ 518 (585)
T TIGR01192 439 EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR 518 (585)
T ss_pred HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence 444444433322 1 134567899999999999999999999999999999999999999999998763
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 519 --~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 519 --KNRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred --CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHHC
Confidence 48999999999999865 999999999999999999988654
No 305
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.8e-34 Score=252.02 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=130.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEE-----------EcCeecc----------ccEEEecccCCCCccCcH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-----------YLGGEWR----------REVAFAGFEVPIQMDVSA 52 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-----------~~G~~~~----------~~i~~v~~~~~~~~~lt~ 52 (259)
+||+++|+|||||||||| +++|+|. ++|.++. ..++|++|...+++. ++
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ 103 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AV 103 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HH
Confidence 799999999999999999 5899996 7776531 135777777666654 33
Q ss_pred HHHH-hccCCCC-HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 53 EKMI-FGVAGID-PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 53 ~~~~-~~~~~~~-~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
.+.+ ....... .+...++++.+++. .++++.+||+|||||++||+||+.+|+++||||||++||+.++..+++.|+
T Consensus 104 ~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~ 183 (255)
T cd03236 104 KGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIR 183 (255)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 3322 2222111 24567889999985 367889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
++.+ .|+|||++||+++++..+||++++|+ |++.+.
T Consensus 184 ~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 184 ELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 9865 58999999999999999999999995 556543
No 306
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.9e-34 Score=276.18 Aligned_cols=169 Identities=25% Similarity=0.302 Sum_probs=141.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC-CCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA-GID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~-~~~ 63 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+.+++. +.. ..+
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~ 435 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTEQAD 435 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCCCCC
Confidence 799999999999999999 5899999999763 4579999999888765 6666654 332 355
Q ss_pred HHHHHHHHHHcCCC---------cccc----CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 64 PQRRAELIKVLDID---------LSWR----MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 64 ~~~~~~~l~~~~l~---------~~~~----~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.++..++++.+++. .+.. -..||||||||++||||++.+|+++||||||++||+.+.+.+++.|.++
T Consensus 436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 436 RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 66777777776652 1222 3479999999999999999999999999999999999999999999886
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
. .++|+|++||+.+.+. .||+|++|++|++++.|+.+++.+.
T Consensus 516 ~--~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 516 M--QGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred h--CCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 4 4799999999998765 5999999999999999999998653
No 307
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-34 Score=279.52 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=137.4
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccC--CCCccCcHHHHHhccC-CCCHHHHHH
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIFGVA-GIDPQRRAE 69 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~--~~~~~lt~~~~~~~~~-~~~~~~~~~ 69 (259)
-+||+++|+|||||||||| +++|+|.+.+. ..++|++|+. .+.+..++.+.+.... ......+.+
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG---IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRD 412 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHH
Confidence 3799999999999999999 48999998743 3689999864 2334445554433222 122345678
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+++.|++. .++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.++|.++ .| |||+||||++
T Consensus 413 ~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~ 488 (638)
T PRK10636 413 YLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH 488 (638)
T ss_pred HHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH
Confidence 99999984 36789999999999999999999999999999999999999999999999875 24 9999999999
Q ss_pred HHhccCCeEEEEeCCeEE-EecChhHHH
Q 024989 147 GLENWPSHIVYVAHGKLQ-LAMPMDKVK 173 (259)
Q Consensus 147 ~~~~~~drv~~l~~G~i~-~~g~~~~~~ 173 (259)
++..+||++++|++|+++ ..|+.+++.
T Consensus 489 ~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 489 LLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999997 789988874
No 308
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-33 Score=281.27 Aligned_cols=169 Identities=22% Similarity=0.298 Sum_probs=141.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|++|++.++.. |+.+++. +....+.
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~~~~~ 560 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNPGAPF 560 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCCCCCH
Confidence 699999999999999999 5899999999864 4679999999887765 6666553 3333455
Q ss_pred HHHHHHHHHcCCC---------c----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------L----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. . .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.
T Consensus 561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 640 (694)
T TIGR01846 561 EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC 640 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 5555556555431 1 23456899999999999999999999999999999999999999999999873
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 641 --~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 641 --RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred --CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence 48999999999998876 999999999999999999998764
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.6e-33 Score=272.20 Aligned_cols=165 Identities=21% Similarity=0.228 Sum_probs=136.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCC-CCccCcHHHHHh-cc--CCCC--HHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMIF-GV--AGID--PQRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~-~~~~lt~~~~~~-~~--~~~~--~~~~ 67 (259)
+||+++|+|||||||||| +++|+|.+++ + ..++|++|++. +++.+|+.+++. .. .+.. ....
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~--~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 423 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T--VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPS 423 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHH
Confidence 699999999999999999 4899999843 3 25999999863 677788877553 22 1221 2335
Q ss_pred HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|.++ .| |||+||||
T Consensus 424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-~viivsHd 499 (552)
T TIGR03719 424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF---AG-CAVVISHD 499 (552)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CC-eEEEEeCC
Confidence 5789999984 36789999999999999999999999999999999999999999999999875 24 89999999
Q ss_pred hhHHhccCCeEEEEeC-CeEE-EecChhHHHH
Q 024989 145 FDGLENWPSHIVYVAH-GKLQ-LAMPMDKVKE 174 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~-G~i~-~~g~~~~~~~ 174 (259)
++++..+||++++|++ |+++ ..|+.+++.+
T Consensus 500 ~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 500 RWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999986 5776 5677766544
No 310
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.7e-33 Score=236.03 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=114.1
Q ss_pred CCcEEEEEcCCCCCccccC-----CceEEEEcCeec---cccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHc
Q 024989 3 EPEMVKVLGRSAFHDTALT-----SSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL 74 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~ 74 (259)
+||+++|+||||||||||+ ++|++.++|... +..++|++| .++++.+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q-------------------------~~~l~~~ 74 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-------------------------LQFLIDV 74 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH-------------------------HHHHHHc
Confidence 7999999999999999994 789998887531 123555433 3467777
Q ss_pred CCC---ccccCCcCCHHHHHHHHHHHHHccC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 75 DID---LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 75 ~l~---~~~~~~~LSgG~~qrv~ia~al~~~--p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
++. .++++.+||+|||||++||+||+.+ |+++||||||++||+.+++.+.+.|+++++ .|.|||++||+++++.
T Consensus 75 ~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~ 153 (176)
T cd03238 75 GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLS 153 (176)
T ss_pred CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 774 4678899999999999999999999 999999999999999999999999999864 6999999999999874
Q ss_pred ccCCeEEEEeCCeE
Q 024989 150 NWPSHIVYVAHGKL 163 (259)
Q Consensus 150 ~~~drv~~l~~G~i 163 (259)
.||++++|.+|+.
T Consensus 154 -~~d~i~~l~~g~~ 166 (176)
T cd03238 154 -SADWIIDFGPGSG 166 (176)
T ss_pred -hCCEEEEECCCCC
Confidence 7999999977654
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.1e-33 Score=271.02 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=138.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccC-CCCccCcHHHHHh-cc--CCC--CHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIF-GV--AGI--DPQRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~-~~~~~lt~~~~~~-~~--~~~--~~~~~ 67 (259)
+||+++|+|||||||||| +++|+|.+++ + ..++|++|+. .+++.+|+.+++. .. .+. .....
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~--~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 425 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T--VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPS 425 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHH
Confidence 799999999999999999 4899999843 2 2599999986 5677888887653 21 111 12334
Q ss_pred HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
..+++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|.++ .| |||++|||
T Consensus 426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-tvi~vtHd 501 (556)
T PRK11819 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF---PG-CAVVISHD 501 (556)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC-eEEEEECC
Confidence 5789999984 36789999999999999999999999999999999999999999999999875 24 89999999
Q ss_pred hhHHhccCCeEEEEeC-CeEE-EecChhHHHHH
Q 024989 145 FDGLENWPSHIVYVAH-GKLQ-LAMPMDKVKEA 175 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~-G~i~-~~g~~~~~~~~ 175 (259)
++++..+||++++|++ |++. ..|+.+++.+.
T Consensus 502 ~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 502 RWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999986 7876 57888877654
No 312
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.1e-33 Score=273.50 Aligned_cols=168 Identities=22% Similarity=0.266 Sum_probs=139.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|+||++.+|.. |+++++ ++....+.
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~~~~ 443 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRPDATD 443 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCCCCCH
Confidence 799999999999999999 4899999999753 4579999999887765 556555 33333455
Q ss_pred HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. .+ .....||||||||++||||++.+|++|||||||++||+.+.+.+++.|+++.
T Consensus 444 ~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~ 523 (576)
T TIGR02204 444 EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM 523 (576)
T ss_pred HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 5666666665542 11 2345799999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 524 --~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 524 --KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred --CCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHH
Confidence 4799999999998876 599999999999999999988765
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.9e-33 Score=233.40 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=112.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|||||||||| +++|+|.++|. +.++|++|++.++ ..|+.+++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~i~~~~q~~~~~-~~tv~~nl~~~-------------- 87 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRPYLP-LGTLREQLIYP-------------- 87 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---ceEEEECCCCccc-cccHHHHhhcc--------------
Confidence 799999999999999999 48999999874 5799999987654 45666554210
Q ss_pred cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989 74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d 153 (259)
++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++ +.|+|++||+++.. .+||
T Consensus 88 -------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d 155 (166)
T cd03223 88 -------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHD 155 (166)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCC
Confidence 46899999999999999999999999999999999999999999999864 58999999999865 5899
Q ss_pred eEEEEeCCe
Q 024989 154 HIVYVAHGK 162 (259)
Q Consensus 154 rv~~l~~G~ 162 (259)
++++|+++.
T Consensus 156 ~i~~l~~~~ 164 (166)
T cd03223 156 RVLDLDGEG 164 (166)
T ss_pred EEEEEcCCC
Confidence 999998763
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-33 Score=239.37 Aligned_cols=150 Identities=15% Similarity=0.255 Sum_probs=126.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc----ccEEEecccCCCCccCcHHHHHhc---cCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR----REVAFAGFEVPIQMDVSAEKMIFG---VAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~----~~i~~v~~~~~~~~~lt~~~~~~~---~~~~~~~~ 66 (259)
+||+++|+|+|||||||| +++|+|.++|.++. +.++|++|+..+++.+|+.+++.. .++ ..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~ 103 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-SAET 103 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc-cHHH
Confidence 799999999999999999 48999999997652 348899888777777888765532 111 2345
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+.++++.+++. .++++.+||||||||++||+|++.+|+++||||||+|||+.++..++++|++.. +.|.|||++||+
T Consensus 104 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~ 182 (195)
T PRK13541 104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHL 182 (195)
T ss_pred HHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCC
Confidence 67788888885 467889999999999999999999999999999999999999999999998754 468999999999
Q ss_pred hhHHhccCCeE
Q 024989 145 FDGLENWPSHI 155 (259)
Q Consensus 145 ~~~~~~~~drv 155 (259)
++++.. +|.+
T Consensus 183 ~~~i~~-~~~~ 192 (195)
T PRK13541 183 ESSIKS-AQIL 192 (195)
T ss_pred ccccch-hhee
Confidence 998877 6654
No 315
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.4e-33 Score=275.68 Aligned_cols=171 Identities=22% Similarity=0.307 Sum_probs=146.3
Q ss_pred CCcEEEEEcCCCCCccccC------------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh-c--cC--
Q 024989 3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF-G--VA-- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~-~--~~-- 60 (259)
+||+++|+||||||||||. .+|+|.++|.+. ++.++|++|++.+++.+|+++++. . +.
T Consensus 50 ~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 129 (617)
T TIGR00955 50 PGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMP 129 (617)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCC
Confidence 6999999999999999982 279999999864 456899999999999999987653 1 11
Q ss_pred -CCCH----HHHHHHHHHcCCC--ccccCC------cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 61 -GIDP----QRRAELIKVLDID--LSWRMH------KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 61 -~~~~----~~~~~~l~~~~l~--~~~~~~------~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
.... ++++++++.+++. .+.+++ .|||||||||+||++|+.+|++++|||||+|||+.++..+++.|
T Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L 209 (617)
T TIGR00955 130 RRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL 209 (617)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHH
Confidence 1121 3467889999885 355554 59999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChh-HHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 128 RKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++++ .|+|||+++|++. ++.++||++++|++|+++..|+++++..
T Consensus 210 ~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 210 KGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred HHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99875 5999999999995 7889999999999999999999988754
No 316
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.5e-33 Score=234.37 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=111.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|||||||||| +++|+|.++|.. ++|++|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~q~~~---------------------------- 71 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----PVYKPQYID---------------------------- 71 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE----EEEEcccCC----------------------------
Confidence 799999999999999999 489999999863 777765421
Q ss_pred cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989 74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d 153 (259)
||||||||++|||||+.+|+++||||||++||+.++..+.++|.+++++.+.|||++||+++++..+||
T Consensus 72 -----------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 140 (177)
T cd03222 72 -----------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD 140 (177)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999865434899999999999999999
Q ss_pred eEEEEeCCeEEEe--cChhHH
Q 024989 154 HIVYVAHGKLQLA--MPMDKV 172 (259)
Q Consensus 154 rv~~l~~G~i~~~--g~~~~~ 172 (259)
++++|+++-.+.. +.+...
T Consensus 141 ~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 141 RIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred EEEEEcCCCccceeccCCcch
Confidence 9999998766533 555433
No 317
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.1e-33 Score=293.41 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=145.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||.++|+|+|||||||| +++|+|.++|.++ +++++++||++.+|.. |+++++......+.+
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sde 1339 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDA 1339 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHH
Confidence 799999999999999999 5899999999864 5679999999998876 788776433334556
Q ss_pred HHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++..++. .+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..
T Consensus 1340 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~- 1418 (1495)
T PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF- 1418 (1495)
T ss_pred HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-
Confidence 677777766552 12 2335799999999999999999999999999999999999999999998764
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|+|+|+|.++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 1419 -~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1419 -KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred -CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 47999999999999987 899999999999999999999764
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-32 Score=292.58 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=145.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||.++|+|+|||||||| +++|+|.++|.++ |++++++||++.+|.. |+++++......+.+
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tde 1342 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDA 1342 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHH
Confidence 799999999999999999 5899999999864 5779999999998876 777776433334556
Q ss_pred HHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++..++. .+. ...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..
T Consensus 1343 ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~- 1421 (1622)
T PLN03130 1343 DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 1421 (1622)
T ss_pred HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-
Confidence 667777766552 122 335899999999999999999999999999999999999999999999864
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|+|+|+|.++.+.. ||||++|++|++++.|+++++.+.
T Consensus 1422 -~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1422 -KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred -CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 48999999999999987 899999999999999999999764
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-32 Score=271.68 Aligned_cols=165 Identities=21% Similarity=0.274 Sum_probs=137.8
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccC-CCCccCcHHHHHh-ccCCC--C--HHH
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIF-GVAGI--D--PQR 66 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~-~~~~~lt~~~~~~-~~~~~--~--~~~ 66 (259)
-+||+++|+|||||||||| +++|+|.+ |... .++|++|+. .+++.+|+.+++. ..... . ...
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~--~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 419 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL--EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRH 419 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc--EEEEEeCcccccCCCCCHHHHHHhhcccccccchHHH
Confidence 3799999999999999999 48999988 5432 599999875 4677888877653 22111 1 344
Q ss_pred HHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 67 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 67 ~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
+.++++.|++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.++|+++ +.|||+|||
T Consensus 420 ~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSH 495 (635)
T PRK11147 420 VLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSH 495 (635)
T ss_pred HHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEEC
Confidence 66788888884 36789999999999999999999999999999999999999999999988764 459999999
Q ss_pred ChhHHhccCCeEEEEe-CCeEEE-ecChhHHH
Q 024989 144 IFDGLENWPSHIVYVA-HGKLQL-AMPMDKVK 173 (259)
Q Consensus 144 ~~~~~~~~~drv~~l~-~G~i~~-~g~~~~~~ 173 (259)
|++++..+||++++|+ +|++.. .|+.++..
T Consensus 496 d~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 496 DRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred CHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999998 899876 67777764
No 320
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.6e-32 Score=272.87 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=133.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHH--hc-cCCCCHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI--FG-VAGIDPQRRAEL 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~--~~-~~~~~~~~~~~~ 70 (259)
+||+++|+|||||||||| +++|+|.+.+. ..++|++|+.......+..... .. ..+...+++.++
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~---~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 610 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK---VRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 610 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---eeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHH
Confidence 799999999999999999 48999998763 4699999875322222222111 11 223345667889
Q ss_pred HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|.++ .| |||++|||+++
T Consensus 611 L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~ 686 (718)
T PLN03073 611 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHL 686 (718)
T ss_pred HHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHH
Confidence 9999985 36789999999999999999999999999999999999999999998888653 24 99999999999
Q ss_pred HhccCCeEEEEeCCeEE-EecChhHHH
Q 024989 148 LENWPSHIVYVAHGKLQ-LAMPMDKVK 173 (259)
Q Consensus 148 ~~~~~drv~~l~~G~i~-~~g~~~~~~ 173 (259)
+..+||++++|++|+++ ..|+.++..
T Consensus 687 i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 687 ISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred HHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999998 678776653
No 321
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1e-32 Score=272.47 Aligned_cols=169 Identities=24% Similarity=0.349 Sum_probs=145.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++.+++.+++.+++. .
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 112 (648)
T PRK10535 33 AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV 112 (648)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHH
Confidence 799999999999999999 4899999999863 245899999998888888766442 1
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.. .+++.++++.+++. .++++.+||+||+||++|||||+.+|++|||||||+|||+.+++.+.++|+++++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~ 192 (648)
T PRK10535 113 YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD 192 (648)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 11222 23456788889885 4678899999999999999999999999999999999999999999999999865
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
.|.|+|++||+++.+. .|||+++|++|++++.|+.++..
T Consensus 193 -~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 193 -RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred -cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 5999999999999886 69999999999999999998764
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1e-32 Score=291.26 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=142.1
Q ss_pred CCcEEEEEcCCCCCcccc---------C----------------------------------------------------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------T---------------------------------------------------- 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~---------------------------------------------------- 21 (259)
+|+.++|+|||||||||| +
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999 4
Q ss_pred --CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHHHcCCC---------ccc-
Q 024989 22 --SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID---------LSW- 80 (259)
Q Consensus 22 --~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~~~~l~---------~~~- 80 (259)
++|+|.++|.++ ++.++||+|++.+|. .|+++++ ++....+.+++.++++..++. .+.
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~ 1351 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTN 1351 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCc
Confidence 499999999864 567999999998885 4666655 554445666677777766541 122
Q ss_pred ---cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 81 ---RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 81 ---~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
+-.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.++....|+|+|+|||.++.+.. ||+|++
T Consensus 1352 VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivv 1430 (1466)
T PTZ00265 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVV 1430 (1466)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEE
Confidence 3457999999999999999999999999999999999999999999988742248999999999998876 999999
Q ss_pred EeC----CeEE-EecChhHHHH
Q 024989 158 VAH----GKLQ-LAMPMDKVKE 174 (259)
Q Consensus 158 l~~----G~i~-~~g~~~~~~~ 174 (259)
|++ |+++ +.|+.+++.+
T Consensus 1431 l~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1431 FNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred EeCCCCCCCEEEEecCHHHHHh
Confidence 999 9965 7999999875
No 323
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.4e-33 Score=279.31 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=145.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+|+.++|+|||||||||. +++|.|.++|.++ |++++.|+|+|.+|...-.++..+|....+.+
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~ 1094 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEE 1094 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHH
Confidence 799999999999999999 6899999999874 57899999999998765444556774445666
Q ss_pred HHHHHHHHcCC-------C--cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDI-------D--LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l-------~--~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++..+. + .+ .+-.+||||||||++||||+++||++|||||.||+||.++.+.+-+.|.+..
T Consensus 1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~- 1173 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM- 1173 (1228)
T ss_pred HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-
Confidence 66666655432 2 13 3456899999999999999999999999999999999999999999998764
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|.|+|.|.+..+.+ ||.|+|+++|+|++.|+-+++.+.
T Consensus 1174 -~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1174 -EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred -cCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhC
Confidence 58999999999999887 999999999999999999999874
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-32 Score=267.19 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=131.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.... .++ + ...+.+
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti-~~n--~-~~~~~~ 423 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL-GPE--G-KPANPA 423 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhh-ccc--c-CchHHH
Confidence 799999999999999999 5899999999864 457999999987776532 222 1 122345
Q ss_pred HHHHHHHHcCCCcc-----c--cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 66 RRAELIKVLDIDLS-----W--RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 66 ~~~~~l~~~~l~~~-----~--~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+.++++.+++... . ...+||||||||++||||++++|++|||||||++||+.+.+.+++.+.+..+..|+|+
T Consensus 424 ~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tv 503 (547)
T PRK10522 424 LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTI 503 (547)
T ss_pred HHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 56778888877421 1 1358999999999999999999999999999999999999999999876654458999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEec
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g 167 (259)
|++||+++.+. .||+|++|++|++++..
T Consensus 504 i~itH~~~~~~-~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 504 FAISHDDHYFI-HADRLLEMRNGQLSELT 531 (547)
T ss_pred EEEEechHHHH-hCCEEEEEECCEEEEec
Confidence 99999997665 69999999999998763
No 325
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.3e-32 Score=290.33 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=145.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||.++|+|+|||||||| +++|+|.++|.++ |++++++||++.+|.. |+++++......+.+
T Consensus 1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sde 1389 (1522)
T TIGR00957 1311 GGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDE 1389 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccCCCHH
Confidence 799999999999999999 4899999999864 5679999999999876 788777533334566
Q ss_pred HHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++..++. .+. ...+||||||||++|||||+++|++|||||||++||+.+...+.+.|++..
T Consensus 1390 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~- 1468 (1522)
T TIGR00957 1390 EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF- 1468 (1522)
T ss_pred HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-
Confidence 677777776652 122 235799999999999999999999999999999999999999999998764
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|||+|+|+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 1469 -~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1469 -EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred -CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 47999999999999887 899999999999999999998764
No 326
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.7e-32 Score=266.73 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=129.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.....++ . ....+.+
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~ 443 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD-E--GEHASLD 443 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc-c--ccchhHH
Confidence 799999999999999999 5899999999864 356899999988776644333 2 1122345
Q ss_pred HHHHHHHHcCCCc--c------ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 66 RRAELIKVLDIDL--S------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 66 ~~~~~l~~~~l~~--~------~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
++.++++.+++.. . ....+||||||||++||||++.+|++|||||||++||+.+.+.+.+.+.+..+..|+|
T Consensus 444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t 523 (555)
T TIGR01194 444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKT 523 (555)
T ss_pred HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 6677888888742 1 1236799999999999999999999999999999999999999988664322335899
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
+|++||+++.+. .||+|++|++|++++.
T Consensus 524 iiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 524 IIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 999999998765 6999999999999865
No 327
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.1e-32 Score=266.51 Aligned_cols=165 Identities=24% Similarity=0.256 Sum_probs=130.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHH------------------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM------------------ 55 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~------------------ 55 (259)
+||+++|+|||||||||| +++|+|.++|.. .++|++|.+......++.++
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 104 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDI 104 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC---EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHH
Confidence 699999999999999999 489999998732 25666554321111111110
Q ss_pred ------------Hh-------cc---CCCC-HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 024989 56 ------------IF-------GV---AGID-PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112 (259)
Q Consensus 56 ------------~~-------~~---~~~~-~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt 112 (259)
+. .+ .+.. ..++.++++.+++..++++.+|||||||||+||+||+.+|++|||||||
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt 184 (635)
T PRK11147 105 SHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPT 184 (635)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 00 00 0111 2456778999998767889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEE-ecChhHHHH
Q 024989 113 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL-AMPMDKVKE 174 (259)
Q Consensus 113 ~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~ 174 (259)
++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+.+++..
T Consensus 185 ~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 185 NHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred CccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 999999999999999875 2599999999999999999999999999974 688877654
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-32 Score=266.02 Aligned_cols=164 Identities=23% Similarity=0.305 Sum_probs=131.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh----------------
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---------------- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~---------------- 57 (259)
+||.++|+|||||||||| +++|+|.+.|.. .++|++|..+.+. .+...++.
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~ 101 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDA 101 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC---EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHH
Confidence 799999999999999999 589999998853 4788877543221 12111100
Q ss_pred -------------c----cCCCC-HHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Q 024989 58 -------------G----VAGID-PQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 116 (259)
Q Consensus 58 -------------~----~~~~~-~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD 116 (259)
. ..+.. ..++.++++.+|+. .++++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD 181 (638)
T PRK10636 102 NERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181 (638)
T ss_pred hccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCC
Confidence 0 00111 23567789999984 367899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989 117 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE 174 (259)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 174 (259)
+.++.++.++|+++ +.|||+||||++++..+||++++|++|++. ..|+.+....
T Consensus 182 ~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 182 LDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred HHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 99999999988753 569999999999999999999999999996 4687776654
No 329
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.9e-32 Score=287.80 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=145.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||.++|+|+|||||||| +++|+|.++|.++ ++.++|+||++.+|.. |+++++......+.+
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sde 1413 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSA 1413 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcccCCCHH
Confidence 799999999999999999 4899999999864 5679999999998876 788877543334567
Q ss_pred HHHHHHHHcCCC---------cccc----CCcCCHHHHHHHHHHHHHccC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LSWR----MHKVSDGQRRRVQICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~~~----~~~LSgG~~qrv~ia~al~~~-p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
++.++++..++. .+.. -.+||||||||++|||||+++ |++|||||||++||+.+.+.+.+.|++..
T Consensus 1414 eI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~ 1493 (1560)
T PTZ00243 1414 EVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF 1493 (1560)
T ss_pred HHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC
Confidence 777888877662 1222 357999999999999999996 89999999999999999999999998764
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|||+|+|.++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 1494 --~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1494 --SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred --CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 47999999999998876 899999999999999999999753
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.4e-32 Score=221.93 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=103.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|||||||||| +++|+|.++|. ..++|++|
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i~~~~~------------------------------- 70 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKIGYFEQ------------------------------- 70 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEEEEEcc-------------------------------
Confidence 799999999999999999 48999999985 46788766
Q ss_pred cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989 74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d 153 (259)
||+||+||++|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|||++||+++++..+||
T Consensus 71 -----------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d 135 (144)
T cd03221 71 -----------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999864 4699999999999999999
Q ss_pred eEEEEeCCe
Q 024989 154 HIVYVAHGK 162 (259)
Q Consensus 154 rv~~l~~G~ 162 (259)
++++|++|+
T Consensus 136 ~v~~l~~g~ 144 (144)
T cd03221 136 KIIELEDGK 144 (144)
T ss_pred EEEEEeCCC
Confidence 999999985
No 331
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=237.71 Aligned_cols=166 Identities=23% Similarity=0.385 Sum_probs=137.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee---------ccccEEEecccC--CCCccCcHHHHHh-----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE---------WRREVAFAGFEV--PIQMDVSAEKMIF----- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~---------~~~~i~~v~~~~--~~~~~lt~~~~~~----- 57 (259)
+||-++|+|||||||||| +++|.+.+.|+. ++++||++.... .+....++.+.+.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~ 135 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccc
Confidence 699999999999999999 479999999974 367899986432 2233445555431
Q ss_pred --ccC--CCCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 58 --GVA--GIDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 58 --~~~--~~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
+++ ..+. +++..+++.+++. .+++..+||-||||||.|||||+.+|++|||||||+|||..++..+.+.|.
T Consensus 136 siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~ 215 (257)
T COG1119 136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE 215 (257)
T ss_pred cccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence 223 2232 3456789999986 478899999999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 129 KECEE-RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 129 ~~~~~-~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
+++.. .+.++|+|||+.+++....++++.|++|+++..|.
T Consensus 216 ~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 216 ELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 98753 27899999999999999999999999999998763
No 332
>PRK13409 putative ATPase RIL; Provisional
Probab=99.98 E-value=2.6e-32 Score=266.61 Aligned_cols=155 Identities=21% Similarity=0.321 Sum_probs=128.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEE-----------EcCeecc----------ccEEEecccCCCCcc---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-----------YLGGEWR----------REVAFAGFEVPIQMD--- 49 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-----------~~G~~~~----------~~i~~v~~~~~~~~~--- 49 (259)
+||+++|+|||||||||| +++|+|. ++|.++. ..+++.+|....++.
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~ 177 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK 177 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence 799999999999999999 5899997 8887541 235666665444332
Q ss_pred CcHHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 50 VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 50 lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
.|+.+++... ...+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|
T Consensus 178 ~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i 255 (590)
T PRK13409 178 GKVRELLKKV--DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255 (590)
T ss_pred chHHHHHHhh--hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 2666655321 1234577899999986 47889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989 128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHG 161 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G 161 (259)
++++ + |.|||++||+++++..+||++++|+++
T Consensus 256 ~~l~-~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 256 RELA-E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9986 4 899999999999999999999999863
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.98 E-value=4.7e-32 Score=286.32 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=128.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEc-Ceec--------cccEEEecccCCCCccCcHHHHH-hccC---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYL-GGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVA--- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~-G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~--- 60 (259)
+||+++|+|||||||||| +++|+|.++ |.++ ++.++|++|++.+|.. |+.+++ ++..
T Consensus 410 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~ 488 (1466)
T PTZ00265 410 EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLK 488 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCcc
Confidence 799999999999999999 589999995 5542 4679999999988864 777654 3321
Q ss_pred ------------------------------------------------------CCCHHHHHHHHHHcCCC---------
Q 024989 61 ------------------------------------------------------GIDPQRRAELIKVLDID--------- 77 (259)
Q Consensus 61 ------------------------------------------------------~~~~~~~~~~l~~~~l~--------- 77 (259)
..+.+++.++++.+++.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g 568 (1466)
T PTZ00265 489 DLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDK 568 (1466)
T ss_pred ccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccc
Confidence 01223455566665542
Q ss_pred ----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989 78 ----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 78 ----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d 153 (259)
...+..+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++.++.|+|+|+|||+++.+. .||
T Consensus 569 ~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD 647 (1466)
T PTZ00265 569 YETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-YAN 647 (1466)
T ss_pred cCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-hCC
Confidence 124567899999999999999999999999999999999999999999999886545899999999999884 799
Q ss_pred eEEEEeCC
Q 024989 154 HIVYVAHG 161 (259)
Q Consensus 154 rv~~l~~G 161 (259)
+|++|++|
T Consensus 648 ~Iivl~~g 655 (1466)
T PTZ00265 648 TIFVLSNR 655 (1466)
T ss_pred EEEEEeCC
Confidence 99999986
No 334
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3.6e-32 Score=227.29 Aligned_cols=172 Identities=17% Similarity=0.236 Sum_probs=148.3
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcC-eec---------cccEEEecccCCCCccCcHHHHHh---c-
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLG-GEW---------RREVAFAGFEVPIQMDVSAEKMIF---G- 58 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G-~~~---------~~~i~~v~~~~~~~~~lt~~~~~~---~- 58 (259)
-+||.-+|+||||+||||+ ++.|++.+.| .++ +..||--+|.|..|..+|+.+++. .
T Consensus 29 ~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~ 108 (249)
T COG4674 29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNR 108 (249)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcC
Confidence 4799999999999999999 4789999999 443 234777889999999999987641 1
Q ss_pred -------c-CCC---CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 59 -------V-AGI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 59 -------~-~~~---~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
+ .+. ..++++++|+..++. .+.....||-||||++.|++.++++|++|+||||++|+-.......-+
T Consensus 109 ~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~tae 188 (249)
T COG4674 109 DKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188 (249)
T ss_pred CcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHH
Confidence 0 111 234678899999986 355678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+|+.++. ..+|+++.|||+++..++++|.+|+.|.+.++|+.+++...
T Consensus 189 Ll~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 189 LLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred HHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 9999864 68999999999999999999999999999999999998754
No 335
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.98 E-value=1.1e-31 Score=259.28 Aligned_cols=152 Identities=23% Similarity=0.267 Sum_probs=126.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+.+++. +....+.
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~ 425 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDASD 425 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCCCCH
Confidence 799999999999999999 5899999999864 4579999999988865 7776653 3333455
Q ss_pred HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. .+ ....+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|.++.
T Consensus 426 ~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~ 505 (529)
T TIGR02857 426 AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA 505 (529)
T ss_pred HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc
Confidence 6666777766652 12 2346799999999999999999999999999999999999999999998864
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
.|+|+|++||+++.+. .||+|++|
T Consensus 506 --~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 506 --QGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred --CCCEEEEEecCHHHHH-hCCEEEeC
Confidence 4899999999999876 59999875
No 336
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=9.2e-32 Score=283.46 Aligned_cols=168 Identities=19% Similarity=0.260 Sum_probs=142.0
Q ss_pred CCcEEEEEcCCCCCccccC------------CceEEEEcCeec----cccEEEecccCCCCccCcHHHHHh-c--cC---
Q 024989 3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIF-G--VA--- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~-~--~~--- 60 (259)
+||+++|+||||||||||. ++|+|.++|.+. ++.++|++|+..+++.+|+++.+. . ++
T Consensus 788 ~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~ 867 (1394)
T TIGR00956 788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence 6999999999999999992 469999999864 466999999888888899987653 1 11
Q ss_pred CCCH----HHHHHHHHHcCCC--ccccCC----cCCHHHHHHHHHHHHHccCCc-EEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 61 GIDP----QRRAELIKVLDID--LSWRMH----KVSDGQRRRVQICMGLLKPFK-VLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 61 ~~~~----~~~~~~l~~~~l~--~~~~~~----~LSgG~~qrv~ia~al~~~p~-lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..+. ++++++++.+++. .++.++ +|||||||||+||++|+.+|+ +|+|||||+|||+.++..+++.|++
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1222 3457889999985 355665 799999999999999999997 9999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhH-HhccCCeEEEEeCC-eEEEecChhH
Q 024989 130 ECEERGATIIYATHIFDG-LENWPSHIVYVAHG-KLQLAMPMDK 171 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~-~~~~~drv~~l~~G-~i~~~g~~~~ 171 (259)
+++ .|+|||++||+++. +.+.||++++|++| +++..|++.+
T Consensus 948 la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 948 LAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 875 59999999999986 45679999999997 9999998743
No 337
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=1.1e-31 Score=250.36 Aligned_cols=170 Identities=21% Similarity=0.311 Sum_probs=140.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccC-CCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVA-GIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~-~~~~ 64 (259)
+||.++|+|||||||||| +++|.|+++|.++ -+.|||+||+..+|+.. +.+++..+. ..++
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT-IaeNIaRf~~~~d~ 439 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT-IAENIARFGEEADP 439 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc-HHHHHHhccccCCH
Confidence 799999999999999999 5899999999764 25699999999998874 667776664 3455
Q ss_pred HHHHHHHHHcCC-------C--ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-------D--LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-------~--~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+.+-+..+..+. + -+..+ ..||||||||++|||||..+|.+++||||-++||....+.+.+.|....
T Consensus 440 ~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k 519 (580)
T COG4618 440 EKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519 (580)
T ss_pred HHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH
Confidence 544333333221 2 13333 5799999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.+|.|+|++||..+.+. .+|+|.+|++|++...|+.+|+..+
T Consensus 520 -~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 520 -ARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred -HcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHH
Confidence 46999999999988665 5899999999999999999998753
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=2e-31 Score=282.65 Aligned_cols=168 Identities=18% Similarity=0.280 Sum_probs=145.1
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+||.++|+|+|||||||| .++|+|.++|.++ +++++|+||++.+|.. |+++++......+.++
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdee 1322 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEE 1322 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcccCCCHHH
Confidence 799999999999999999 3799999999864 5679999999999876 7887774333345677
Q ss_pred HHHHHHHcCCC---------ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 67 RAELIKVLDID---------LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 67 ~~~~l~~~~l~---------~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
+.++++..++. ++..+ .+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..
T Consensus 1323 i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-- 1400 (1490)
T TIGR01271 1323 IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-- 1400 (1490)
T ss_pred HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--
Confidence 77888887762 12222 4799999999999999999999999999999999999999999999864
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.++|||+|||.++.+.. ||+|++|++|+|++.|+++++.+
T Consensus 1401 ~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1401 SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence 47999999999998887 89999999999999999999875
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1.2e-31 Score=282.54 Aligned_cols=172 Identities=20% Similarity=0.208 Sum_probs=145.0
Q ss_pred CCcEEEEEcCCCCCccccC-------------CceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+||||||||||+ ++|+|.++|.+. ++.++|++|+..+++.+|+.+.+. . .
T Consensus 86 ~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~ 165 (1394)
T TIGR00956 86 PGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARC 165 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHh
Confidence 7999999999999999992 589999999754 345899999988899999987542 1 1
Q ss_pred C-------CCCHH----H-HHHHHHHcCCC--ccc-----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH
Q 024989 60 A-------GIDPQ----R-RAELIKVLDID--LSW-----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 120 (259)
Q Consensus 60 ~-------~~~~~----~-~~~~l~~~~l~--~~~-----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~ 120 (259)
. +.+.+ + .+.+++.+++. .+. .++.|||||||||+||++|+.+|++++|||||+|||+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~ 245 (1394)
T TIGR00956 166 KTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245 (1394)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHH
Confidence 1 12221 2 24578889985 233 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 121 ADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 121 ~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
..+.+.|++++++.|+|||+++|+. +++.+++|++++|++|+++..|+++++.+
T Consensus 246 ~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 246 LEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 9999999999865699999999996 78999999999999999999999987743
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=226.74 Aligned_cols=170 Identities=24% Similarity=0.322 Sum_probs=141.6
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccc--------cEEEecccCC--CCccCcHHHHHh--cc-
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR--------EVAFAGFEVP--IQMDVSAEKMIF--GV- 59 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~--------~i~~v~~~~~--~~~~lt~~~~~~--~~- 59 (259)
-+|+|+.|+|.||+||||| +++|+|.++|.++.+ .++-|+|++. .++.+|++|++. ..
T Consensus 30 ~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~R 109 (263)
T COG1101 30 AEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESR 109 (263)
T ss_pred cCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence 4899999999999999999 599999999987632 2445778764 478999987652 11
Q ss_pred ---CCCC----H---HHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH
Q 024989 60 ---AGID----P---QRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 125 (259)
Q Consensus 60 ---~~~~----~---~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~ 125 (259)
+++. . +...+.++.+++. ++.++.-|||||||-++++.|.++.|++|+|||.|++|||.....+++
T Consensus 110 g~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~ 189 (263)
T COG1101 110 GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME 189 (263)
T ss_pred CcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHH
Confidence 1222 1 2234556666653 466889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 171 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 171 (259)
.=.++.++.+.|.+||||+|+.+..+.+|.++|++|+|+.+..-++
T Consensus 190 lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~ 235 (263)
T COG1101 190 LTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235 (263)
T ss_pred HHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc
Confidence 9999988889999999999999999999999999999999765544
No 341
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=3.3e-31 Score=254.48 Aligned_cols=167 Identities=27% Similarity=0.343 Sum_probs=137.2
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC-----------
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA----------- 60 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~----------- 60 (259)
-+|+-++|+|+|||||||| +++|+|...+. -+++|++|++..+...|+.+.+. +..
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~ 103 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEE 103 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC---ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHH
Confidence 3799999999999999999 48999988764 25999999999887767654321 110
Q ss_pred ------------------------CCC-HHHHHHHHHHcCCCc-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCC
Q 024989 61 ------------------------GID-PQRRAELIKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 114 (259)
Q Consensus 61 ------------------------~~~-~~~~~~~l~~~~l~~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~g 114 (259)
++. ..++..++..+++.. ++++++||||||.||+||+||+.+|++||||||||+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNH 183 (530)
T COG0488 104 AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH 183 (530)
T ss_pred HHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 011 133456677777764 788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEE-ecChhHHHHH
Q 024989 115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL-AMPMDKVKEA 175 (259)
Q Consensus 115 LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~~ 175 (259)
||..+..++.++|.++ .| |+|+||||.+++..+|++|+.++.|++.. .|+.+...+.
T Consensus 184 LD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 184 LDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred cCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHH
Confidence 9999999999999854 46 99999999999999999999999998865 5777766543
No 342
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=8.4e-32 Score=273.53 Aligned_cols=174 Identities=19% Similarity=0.302 Sum_probs=153.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHH---hccCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMI---FGVAG 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~---~~~~~ 61 (259)
+||..+++|+||+||||+ +++|++.+.|.+. ++.+||+||...+.+.+|.+|.+ ....|
T Consensus 590 ~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG 669 (885)
T KOG0059|consen 590 PGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG 669 (885)
T ss_pred CCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC
Confidence 689999999999999999 5899999999764 34599999999999999998754 33455
Q ss_pred CCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 62 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 62 ~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
+.. +.++++++.+++. .+++++.||||+|+|+++|.|++.+|++++|||||+|+||.+++.+|+++.+..+ +|
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g 748 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NG 748 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 443 3356788999985 4778999999999999999999999999999999999999999999999999865 56
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 177 (259)
+.||++||.|+|++.+|||+.+|.+|++.+.|+++++....+
T Consensus 749 ~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 749 KAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred CEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 799999999999999999999999999999999999986543
No 343
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4e-31 Score=229.88 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=89.1
Q ss_pred HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
.++++.+++. .++++.+||||||||++||+||+.+| ++|||||||+|||+..+..++++|+++++ .|.|||++|
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~it 196 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVE 196 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 5678888884 36789999999999999999999998 59999999999999999999999999865 599999999
Q ss_pred CChhHHhccCCeEEEE------eCCeEEEec
Q 024989 143 HIFDGLENWPSHIVYV------AHGKLQLAM 167 (259)
Q Consensus 143 H~~~~~~~~~drv~~l------~~G~i~~~g 167 (259)
|+++++. +||++++| ++|+|++.|
T Consensus 197 H~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 197 HDEDTIR-AADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred eCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence 9999875 89999999 999999865
No 344
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.2e-31 Score=282.54 Aligned_cols=172 Identities=22% Similarity=0.308 Sum_probs=146.0
Q ss_pred CCcEEEEEcCCCCCccccC---------C---ceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh---ccCC-
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S---SGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF---GVAG- 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~---~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~---~~~~- 61 (259)
+||+++|+||||||||||+ + +|+|.++|.+. ++.++|++|+..+++.+|+.+.+. ...+
T Consensus 190 ~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~ 269 (1470)
T PLN03140 190 PSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGV 269 (1470)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCC
Confidence 7999999999999999993 4 89999999864 456999999988899999987542 1111
Q ss_pred ---------CCH-H---------------------------HHHHHHHHcCCCc-------cccCCcCCHHHHHHHHHHH
Q 024989 62 ---------IDP-Q---------------------------RRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICM 97 (259)
Q Consensus 62 ---------~~~-~---------------------------~~~~~l~~~~l~~-------~~~~~~LSgG~~qrv~ia~ 97 (259)
... + ..+.+++.+||.. +..++.|||||||||+||+
T Consensus 270 ~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~ 349 (1470)
T PLN03140 270 GTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGE 349 (1470)
T ss_pred CCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehh
Confidence 000 0 1245788899852 4467899999999999999
Q ss_pred HHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 98 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 98 al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+. +++.++||+|++|++|+++..|+.+++..
T Consensus 350 aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 350 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILE 427 (1470)
T ss_pred hhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHH
Confidence 999999999999999999999999999999999775689999999996 68999999999999999999999988764
No 345
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=3.7e-31 Score=278.94 Aligned_cols=167 Identities=19% Similarity=0.275 Sum_probs=141.5
Q ss_pred CCcEEEEEcCCCCCccccC-----------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHh-c----cC-
Q 024989 3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIF-G----VA- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~-~----~~- 60 (259)
+||+++|+||||||||||+ .+|+|.++|.+. ++.++|++|+..+++.+|+.+.+. . ..
T Consensus 905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~ 984 (1470)
T PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPK 984 (1470)
T ss_pred CCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCC
Confidence 6999999999999999993 479999999754 355899999988889999987542 1 11
Q ss_pred CCCH----HHHHHHHHHcCCC--ccccC-----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 61 GIDP----QRRAELIKVLDID--LSWRM-----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 61 ~~~~----~~~~~~l~~~~l~--~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..+. +.++++++.+++. .+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus 985 ~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140 985 EVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 1222 2357889999985 34444 58999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChh-HHhccCCeEEEEeC-CeEEEecChh
Q 024989 130 ECEERGATIIYATHIFD-GLENWPSHIVYVAH-GKLQLAMPMD 170 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 170 (259)
+++ .|+|||++||+++ ++.+.||++++|++ |+++..|++.
T Consensus 1065 l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1065 TVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 875 5999999999998 57789999999996 8999999864
No 346
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.97 E-value=3.8e-31 Score=255.56 Aligned_cols=140 Identities=24% Similarity=0.317 Sum_probs=117.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHH-hccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~ 65 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|.. |+++++ ++....+.+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~~~e 438 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPDATDE 438 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCCCCHH
Confidence 799999999999999999 5899999999764 4679999999998876 566554 444445667
Q ss_pred HHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++..++. .+. .-.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+..
T Consensus 439 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~- 517 (529)
T TIGR02868 439 ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL- 517 (529)
T ss_pred HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-
Confidence 777788777652 122 235799999999999999999999999999999999999999999998753
Q ss_pred hcCcEEEEEeCCh
Q 024989 133 ERGATIIYATHIF 145 (259)
Q Consensus 133 ~~g~tiii~sH~~ 145 (259)
.++|+|++||++
T Consensus 518 -~~~TvIiItHrl 529 (529)
T TIGR02868 518 -SGKTVVVITHHL 529 (529)
T ss_pred -CCCEEEEEecCC
Confidence 479999999974
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.9e-31 Score=214.85 Aligned_cols=117 Identities=33% Similarity=0.463 Sum_probs=104.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------ccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|+|||||||| +++|+|+++|.+.. +.++|++|
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q----------------------- 80 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ----------------------- 80 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-----------------------
Confidence 689999999999999999 47999999987532 23444443
Q ss_pred HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
||+||+||++||++++.+|++++|||||+|||+.++..+++.|.++... +.|+|++||++
T Consensus 81 -------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~ 140 (157)
T cd00267 81 -------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDP 140 (157)
T ss_pred -------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 9999999999999999999999999999999999999999999988654 79999999999
Q ss_pred hHHhccCCeEEEEeCCe
Q 024989 146 DGLENWPSHIVYVAHGK 162 (259)
Q Consensus 146 ~~~~~~~drv~~l~~G~ 162 (259)
+++..+||++++|++|+
T Consensus 141 ~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 141 ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHhCCEEEEEeCcC
Confidence 99999999999999875
No 348
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=221.65 Aligned_cols=170 Identities=21% Similarity=0.221 Sum_probs=141.9
Q ss_pred CCcEEEEEcCCCCCccccC-----------CceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHhc----
Q 024989 3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIFG---- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~~---- 58 (259)
+||+.+|+||||||||||. ++|+|.++|+++ +..+...+|.|.-++..+..+++..
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~ 108 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence 6999999999999999993 899999999875 2346666788888888888776531
Q ss_pred cCC---CC---HHHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 59 VAG---ID---PQRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 59 ~~~---~~---~~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
.++ .. .+...+.++.++++ .++.+. .+|||+|+|..|+++++.+|++.|||||-||||..+-+.+.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~ 188 (251)
T COG0396 109 RRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188 (251)
T ss_pred hhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence 111 11 24456788888886 355554 699999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccC-CeEEEEeCCeEEEecChhHHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWP-SHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~-drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++.. .|.++++|||+-..+..+- |+|.+|.+|+|+.+|.+ ++..
T Consensus 189 ~lr~-~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 189 ALRE-EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHhc-CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence 9865 6999999999988777653 99999999999999999 6654
No 349
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.8e-31 Score=215.52 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=143.6
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCee-----c------------cccEEEecccCCCCccCcHH--
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-----W------------RREVAFAGFEVPIQMDVSAE-- 53 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-----~------------~~~i~~v~~~~~~~~~lt~~-- 53 (259)
-+||+++|+|.|||||||| +++|+|.|.-.+ + +-.-||+-|++..-..+.+.
T Consensus 30 ~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG 109 (258)
T COG4107 30 YPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAG 109 (258)
T ss_pred cCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccC
Confidence 4799999999999999999 589999997532 1 12357887766432222221
Q ss_pred ----HHH--hcc--CCCCHHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989 54 ----KMI--FGV--AGIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 54 ----~~~--~~~--~~~~~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~ 122 (259)
|-+ .+. |+.-++...++++.++++. +..+.++|||||||+.|||-|+..|+++++||||.|||...+..
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHH
Confidence 211 121 2322455678999999863 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh
Q 024989 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 177 (259)
Q Consensus 123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 177 (259)
++++++.+..+.|.+++++|||+..+.-++||..+|++|++++.|-++.+.....
T Consensus 190 LLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~ 244 (258)
T COG4107 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPH 244 (258)
T ss_pred HHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCC
Confidence 9999999999899999999999999999999999999999999999988876543
No 350
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.5e-31 Score=256.38 Aligned_cols=171 Identities=21% Similarity=0.347 Sum_probs=147.9
Q ss_pred CCcEEEEEcCCCCCccccC------------CceEEEEcCee-----ccccEEEecccCCCCccCcHHHHHh-----ccC
Q 024989 3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGE-----WRREVAFAGFEVPIQMDVSAEKMIF-----GVA 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~-----~~~~i~~v~~~~~~~~~lt~~~~~~-----~~~ 60 (259)
+||+.+|+||||||||||. .+|+|.++|+. +++..|||.|+..+++.+||+|.+. .++
T Consensus 55 ~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp 134 (613)
T KOG0061|consen 55 PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLP 134 (613)
T ss_pred cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCC
Confidence 6999999999999999993 58999999953 3566899999999999999998552 222
Q ss_pred C-CC----HHHHHHHHHHcCCC--ccccC-----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 61 G-ID----PQRRAELIKVLDID--LSWRM-----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 61 ~-~~----~~~~~~~l~~~~l~--~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
. .+ .++++++++.+++. .+..+ +.+|||||+||+||.-|+++|.+|+|||||+|||..+..++.+.|+
T Consensus 135 ~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk 214 (613)
T KOG0061|consen 135 SSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLK 214 (613)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence 2 12 24578899999986 34555 4699999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 129 KECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++++ |+|||++-|.. .++.+..|++++|.+|+++..|+++++.+
T Consensus 215 ~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 215 RLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 99986 99999999998 46888899999999999999999987654
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=2.7e-30 Score=255.71 Aligned_cols=148 Identities=15% Similarity=0.263 Sum_probs=123.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-cc-------CCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GV-------AGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~-------~~~~~~ 65 (259)
+||.++|+|||||||||| +++|+|.+++ ++.++|++|++.+++. |+.+++. +. .....+
T Consensus 477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~ 552 (659)
T TIGR00954 477 SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDK 552 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHH
Confidence 799999999999999999 3789998865 4579999999887776 7776553 22 122345
Q ss_pred HHHHHHHHcCCC--cccc---------CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 66 RRAELIKVLDID--LSWR---------MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 66 ~~~~~l~~~~l~--~~~~---------~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
++.++++.+++. .+++ ..+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .
T Consensus 553 ~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~ 628 (659)
T TIGR00954 553 DLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----F 628 (659)
T ss_pred HHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----c
Confidence 667888888874 1222 368999999999999999999999999999999999999999988864 3
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEe
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
|.|+|++||+++.+ ..||++++|+
T Consensus 629 ~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 629 GITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred CCEEEEEeCchHHH-HhCCEEEEEe
Confidence 89999999999987 5699999996
No 352
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=3.2e-30 Score=273.47 Aligned_cols=162 Identities=22% Similarity=0.321 Sum_probs=133.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK 72 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~ 72 (259)
+||.++|+|||||||||| +++|+|.++| .++|++|++.+++. |+.+++ ++.. .+.++..++++
T Consensus 451 ~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----~iayv~Q~~~l~~~-Ti~eNI~~g~~-~~~~~~~~~~~ 523 (1490)
T TIGR01271 451 KGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----RISFSPQTSWIMPG-TIKDNIIFGLS-YDEYRYTSVIK 523 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----EEEEEeCCCccCCc-cHHHHHHhccc-cchHHHHHHHH
Confidence 799999999999999999 4899999988 49999999888765 887765 4432 23233333333
Q ss_pred HcCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEE
Q 024989 73 VLDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATI 138 (259)
Q Consensus 73 ~~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~-l~~~~~~~g~ti 138 (259)
..++ + ...+..+||||||||++||||++.+|+++||||||++||+...+.+++. +.++. .|+|+
T Consensus 524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tv 601 (1490)
T TIGR01271 524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTR 601 (1490)
T ss_pred HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeE
Confidence 2222 1 1235679999999999999999999999999999999999999999975 56653 48999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus 602 ilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 602 ILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred EEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999875 99999999999999999998865
No 353
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.6e-30 Score=228.18 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~---p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+..++++.+++. .++++.+|||||+||+.||++|+.+ |+++||||||+|||+..+..+++.|+++.+ .|.||
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tv 225 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTV 225 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 3455688888885 3678899999999999999999996 799999999999999999999999999865 59999
Q ss_pred EEEeCChhHHhccCCeEEEE------eCCeEEEecCh
Q 024989 139 IYATHIFDGLENWPSHIVYV------AHGKLQLAMPM 169 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l------~~G~i~~~g~~ 169 (259)
|++||+++++. .||++++| ++|++++.|++
T Consensus 226 IiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 226 VVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999986 69999999 89999998864
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=6.5e-30 Score=271.70 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=134.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||.++|+|||||||||| +++|+|.++| .++|++|++.++. .|+.+++......+.++.+++++.
T Consensus 663 ~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----~i~yv~Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~ 736 (1522)
T TIGR00957 663 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----SVAYVPQQAWIQN-DSLRENILFGKALNEKYYQQVLEA 736 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----EEEEEcCCccccC-CcHHHHhhcCCccCHHHHHHHHHH
Confidence 799999999999999999 4899999987 5999999987764 577776642222344444444443
Q ss_pred cCC-------C------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCcEEE
Q 024989 74 LDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC-EERGATII 139 (259)
Q Consensus 74 ~~l-------~------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~-~~~g~tii 139 (259)
.++ + ...+..+||||||||++||||++.+|+++||||||++||+...+.+++.+.+.. ...|+|+|
T Consensus 737 ~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvI 816 (1522)
T TIGR00957 737 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRI 816 (1522)
T ss_pred hCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEE
Confidence 332 1 134567899999999999999999999999999999999999999999886531 12479999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus 817 lvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 817 LVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred EEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999876 99999999999999999998865
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=209.51 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=132.6
Q ss_pred CCCcEEEEEcCCCCCccccC------------CceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hccC--
Q 024989 2 VEPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGVA-- 60 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~~-- 60 (259)
-|||++.|+||||||||||. .+|++.++++++ ++++|+.+|+..+|+.+++.+++ +.+.
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~ 105 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT 105 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc
Confidence 48999999999999999993 589999999865 57899999999999999987654 3332
Q ss_pred --CCC-HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 61 --GID-PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 61 --~~~-~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
+.. +..++..+++.++. .++.+.+||||||-||++-|+|+..|+.++||||++.||..-+.++.+++....+..|
T Consensus 106 ~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag 185 (213)
T COG4136 106 LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG 185 (213)
T ss_pred cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 211 22356788888886 4678999999999999999999999999999999999999999999999988888889
Q ss_pred cEEEEEeCChhHHhccCCeEEEE
Q 024989 136 ATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l 158 (259)
.-.|++|||...+. ...||+-|
T Consensus 186 iPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 186 IPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred CCeEEEecccccCC-CCCeeeee
Confidence 99999999999888 45566544
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.8e-29 Score=268.84 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=134.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCc-eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSS-GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 72 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~-G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~ 72 (259)
+||.++|+|||||||||| +++ |+|.+ +..++|++|++.++.. |+++++..-...+.+++.++++
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-----~~~Iayv~Q~p~Lfng-TIreNI~fg~~~d~e~y~~vl~ 715 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-----RGTVAYVPQVSWIFNA-TVRDNILFGSPFDPERYERAID 715 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----cCeEEEEcCccccCCC-CHHHHHhCCCcccHHHHHHHHH
Confidence 799999999999999999 478 89975 4579999999888765 6776654222346677777777
Q ss_pred HcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEE
Q 024989 73 VLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATI 138 (259)
Q Consensus 73 ~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~ti 138 (259)
..++. .+ .+-.+||||||||++||||+..+|+++||||||++||+...+.+++ .+.... .|+|+
T Consensus 716 a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTv 793 (1622)
T PLN03130 716 VTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTR 793 (1622)
T ss_pred HhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEE
Confidence 76652 11 2345799999999999999999999999999999999998887764 555443 48999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 794 IlVTH~l~~l~~-aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 794 VLVTNQLHFLSQ-VDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred EEEECCHhHHHh-CCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999987765 99999999999999999999875
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.6e-29 Score=268.43 Aligned_cols=163 Identities=19% Similarity=0.242 Sum_probs=133.0
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK 72 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~ 72 (259)
+||.++|+||||||||||. ++|.+. .+++.++|++|++.++.. |+++++ ++. ..+.+++.++++
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~-~~~~e~~~~vl~ 715 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----VIRGSVAYVPQVSWIFNA-TVRENILFGS-DFESERYWRAID 715 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----EecCcEEEEcCccccccc-cHHHHhhcCC-ccCHHHHHHHHH
Confidence 7999999999999999993 566553 346789999999988865 677665 443 346677777777
Q ss_pred HcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEE
Q 024989 73 VLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATI 138 (259)
Q Consensus 73 ~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~-l~~~~~~~g~ti 138 (259)
..++. .+ .+-.+||||||||++||||+..+|+++||||||++||+.+.+.+++. +... . .|+|+
T Consensus 716 ~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l-~~kT~ 793 (1495)
T PLN03232 716 VTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-L-KGKTR 793 (1495)
T ss_pred HhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-h-cCCEE
Confidence 76652 11 23357999999999999999999999999999999999999888765 4443 2 48999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 794 IlvTH~~~~l~~-aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 794 VLVTNQLHFLPL-MDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEEECChhhHHh-CCEEEEEeCCEEEEecCHHHHHh
Confidence 999999998765 99999999999999999999875
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.5e-29 Score=207.74 Aligned_cols=177 Identities=15% Similarity=0.284 Sum_probs=148.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCC--CCccCcHHHHHhc---c-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVP--IQMDVSAEKMIFG---V- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~--~~~~lt~~~~~~~---~- 59 (259)
+|+.++|+|.|||||||| |++|+|.++|+.+ .+.|.+++|+++ +.|.+.+...+-+ +
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 689999999999999999 6999999999754 356888988875 3444544444322 1
Q ss_pred CCCCH----HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 AGIDP----QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+++ +++.+-+..+|+-+ +-++..||-||||||++||||+.+|+++|.||..++||...+.++.+++-++.+
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQe 197 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE 197 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHH
Confidence 12232 33456778888853 457899999999999999999999999999999999999999999999999998
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhhh
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 179 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~ 179 (259)
+.|.+.|+++.++..+..++|.|+||+.|++++.|.+.++.......
T Consensus 198 k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~ 244 (267)
T COG4167 198 KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHE 244 (267)
T ss_pred HhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccH
Confidence 88999999999999999999999999999999999999998765443
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.6e-29 Score=216.76 Aligned_cols=167 Identities=18% Similarity=0.318 Sum_probs=142.3
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEE-ecccCCCCccCcHHHHHh---ccCCCCH----
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAF-AGFEVPIQMDVSAEKMIF---GVAGIDP---- 64 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~-v~~~~~~~~~lt~~~~~~---~~~~~~~---- 64 (259)
-+||.++|+|+|||||||| ||+|+|.+.|+- ++ +.....+.+.+|.++++. .+.|...
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-----~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-----APLIELGAGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-----ehhhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 3799999999999999999 699999999862 22 222334567888887653 2345443
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
+.++++++.-+|. .+.|++++|.||+-|++++.|...+|++||+||-.+--|+..+++-.+.+.++.+ ++.|||++|
T Consensus 126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~-~~~tiv~VS 204 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVS 204 (249)
T ss_pred HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEE
Confidence 3456777777775 5889999999999999999999999999999999999999999999999999865 479999999
Q ss_pred CChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 143 HIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
||++.+.++|||+++|++|++...|+++++..
T Consensus 205 Hd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 205 HDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred CCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 99999999999999999999999999999865
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=9.5e-30 Score=253.10 Aligned_cols=106 Identities=26% Similarity=0.234 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 65 QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 65 ~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
+++.+++..+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++ |.|||+|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviiv 397 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVV 397 (718)
T ss_pred HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEE
Confidence 3455677778874 35678999999999999999999999999999999999999999999999764 6799999
Q ss_pred eCChhHHhccCCeEEEEeCCeEE-EecChhHHHH
Q 024989 142 THIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE 174 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 174 (259)
|||++++..+||++++|++|++. ..|+.+++..
T Consensus 398 sHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 398 SHAREFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999996 5777766544
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=3.4e-29 Score=266.21 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=130.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHH---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAEL--- 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~--- 70 (259)
+||+++|+|||||||||| +++|+|.+. +.++|++|++.++. .|+.+++......+.++..++
T Consensus 685 ~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----~~i~yv~Q~~~l~~-~Tv~enI~~~~~~~~~~~~~~~~~ 758 (1560)
T PTZ00243 685 RGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----RSIAYVPQQAWIMN-ATVRGNILFFDEEDAARLADAVRV 758 (1560)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----CeEEEEeCCCccCC-CcHHHHHHcCChhhHHHHHHHHHH
Confidence 799999999999999999 479999764 56999999987764 577776543222222233333
Q ss_pred ------HHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 71 ------IKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 71 ------l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
++.+ |+. .+++..+||||||||++|||||+.+|+++||||||++||+.....+++.+..... .|+|+|+
T Consensus 759 ~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIl 837 (1560)
T PTZ00243 759 SQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVL 837 (1560)
T ss_pred hhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEE
Confidence 3333 332 2567889999999999999999999999999999999999998888764432222 4899999
Q ss_pred EeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 141 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+||+++.+. .||+|++|++|+++..|+.+++...
T Consensus 838 vTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 838 ATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred EeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999986 5999999999999999999998653
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=234.59 Aligned_cols=165 Identities=18% Similarity=0.158 Sum_probs=136.3
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCC-CCccCcHHHHHhccC-CCCHHHHHHH
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMIFGVA-GIDPQRRAEL 70 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~-~~~~lt~~~~~~~~~-~~~~~~~~~~ 70 (259)
-.|+-++|+||||+||||| +.+|+|.+.-. -++||..|+.. +.+..|+.+.+.... ......+...
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~---v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~ 422 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET---VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAY 422 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHH
Confidence 3799999999999999999 36888877643 35899998763 345667777665433 2235667889
Q ss_pred HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
+..|++. ..+++..||||||.||.||+.++.+|.+||||||||+||..++..+.+.|.++ ..|||+||||..+
T Consensus 423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~F 498 (530)
T COG0488 423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYF 498 (530)
T ss_pred HHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 9999996 35789999999999999999999999999999999999999999999988764 4599999999999
Q ss_pred HhccCCeEEEEeCCeEEEe-cChhHHHH
Q 024989 148 LENWPSHIVYVAHGKLQLA-MPMDKVKE 174 (259)
Q Consensus 148 ~~~~~drv~~l~~G~i~~~-g~~~~~~~ 174 (259)
+..+|++++.+.+ .+... |+.++..+
T Consensus 499 l~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 499 LDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999999998 66554 77776544
No 363
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=232.23 Aligned_cols=171 Identities=19% Similarity=0.271 Sum_probs=142.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+|+.++++||||+||||+ .++|+|.++|+++ |+.||.|||+..+|.+.-.++.-++..+.+.+
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asne 642 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNE 642 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChH
Confidence 699999999999999999 3899999999975 46799999999998876655554554444444
Q ss_pred HHHHHHHHc-------CCCc--c----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVL-------DIDL--S----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~-------~l~~--~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++.+.. +++. + .+--.|||||||||+|||+++..|.+++|||.|++||-.+.+.+...|.++|+
T Consensus 643 evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca 722 (790)
T KOG0056|consen 643 EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA 722 (790)
T ss_pred HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc
Confidence 444433333 2321 1 23347999999999999999999999999999999999999999999999985
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|.|-|++.|.++.+-. ||-|+++++|+|++.|..+|+....
T Consensus 723 --~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 723 --NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKRD 763 (790)
T ss_pred --CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhcc
Confidence 7899999999999987 8999999999999999999987653
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=8.5e-29 Score=211.15 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=111.8
Q ss_pred CCcEEEEEcCCCCCccccC---------C---------ceEEEEcCeec-----cccEEEecccCCCCccCcHHHHHhcc
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S---------SGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMIFGV 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~---------~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~~~~ 59 (259)
+| +++|+||||||||||+ . .|++.+.|.+. .+.++|++|++..+. ..
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~---------~~ 91 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY---------SI 91 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce---------eE
Confidence 35 9999999999999993 1 23566666553 356899999876651 11
Q ss_pred CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 60 AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 60 ~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
...+++.++++..+ ..++++.+||+|||||++||++++ .+|+++||||||+|||+..+..+++.|+++.+ +
T Consensus 92 --~~~~~~~~~l~~~~-~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~ 166 (197)
T cd03278 92 --ISQGDVSEIIEAPG-KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--E 166 (197)
T ss_pred --EehhhHHHHHhCCC-ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--C
Confidence 01345666776621 146778999999999999999997 46799999999999999999999999998753 6
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeC
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
.|||++||+++++ .+||+++.|..
T Consensus 167 ~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 167 TQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred CEEEEEECCHHHH-hhcceEEEEEe
Confidence 8999999999987 47999998875
No 365
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.96 E-value=1.4e-28 Score=207.32 Aligned_cols=188 Identities=69% Similarity=1.127 Sum_probs=161.1
Q ss_pred CCcEEEEEcCCCCCccccC----------------------------CceEEEEcCeeccccEEEecccCCCCccCcHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT----------------------------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 54 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~----------------------------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~ 54 (259)
.|.-..++|.||+|||||+ +||..+|.|.+|.+.+++-+ +.+++.++++++
T Consensus 39 ~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~ 117 (291)
T KOG2355|consen 39 AGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH 117 (291)
T ss_pred CCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHH
Confidence 4677889999999999993 35555666666666666554 678888999999
Q ss_pred HHhccCCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 55 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
++++..+.++++.+++++.++++..|+.+.+|-|||+||.|++.|++.-++|+|||-|-.||..++..+++++++.|.++
T Consensus 118 mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~R 197 (291)
T KOG2355|consen 118 MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQR 197 (291)
T ss_pred HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhc
Confidence 99999888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhh-hhHHHHHHHHHhhh
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK-LSLMRTVESWLRKE 191 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
|.||++.||..+-++.+..+++.|+.|+++..-+.+.+.+-.. .......++|+..+
T Consensus 198 gatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~~~nl~s~veswlr~E 255 (291)
T KOG2355|consen 198 GATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFSTSPNLLSTVESWLRKE 255 (291)
T ss_pred CcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhccchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999777666655322 23444566776643
No 366
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=225.54 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=142.8
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~ 64 (259)
..|+.++|+|+||+||||+ .++|.|.++|+++ ++.||.+||+..+|.+.-.+++-++....+.
T Consensus 287 ~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~ 366 (497)
T COG5265 287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA 366 (497)
T ss_pred cCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccH
Confidence 4689999999999999999 4899999999875 4569999999999888655565565544444
Q ss_pred HHHHHHHHHcCC-------C--ccccC----CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-------D--LSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-------~--~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++....+.+.+ + .+.++ -.|||||||||+|||+++.+|++|+|||.|++||..+.+.+...|++..
T Consensus 367 eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~ 446 (497)
T COG5265 367 EEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446 (497)
T ss_pred HHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh
Confidence 444444444332 1 13333 4699999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|.|-+++.|.+..+.. ||.|++|++|+|++.|+-+++...
T Consensus 447 --~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 447 --AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred --CCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 58999999999999988 899999999999999999998765
No 367
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=226.20 Aligned_cols=170 Identities=23% Similarity=0.310 Sum_probs=142.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccC---CCCccCcHHHHHh----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEV---PIQMDVSAEKMIF---- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~---~~~~~lt~~~~~~---- 57 (259)
+||+++|.|-=|+|+|-| +++|+|.++|++. +..++|+|.+. .++..+++.+++.
T Consensus 284 ~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l 363 (500)
T COG1129 284 AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASL 363 (500)
T ss_pred CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhh
Confidence 799999999999999977 3799999999864 23589998654 4567777765431
Q ss_pred -ccC---CCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 024989 58 -GVA---GIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 126 (259)
Q Consensus 58 -~~~---~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~ 126 (259)
.+. -++. +..+++.+.+++. .+.++.+||||+||||.|||+|+.+|++|||||||.|+|..++.+++++
T Consensus 364 ~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~l 443 (500)
T COG1129 364 RRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443 (500)
T ss_pred hhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHH
Confidence 111 1232 2245677888874 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 127 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 127 l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
|+++++ +|++||++|-+++|+..+||||+||++|+++..-+.+++.
T Consensus 444 i~~lA~-~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~t 489 (500)
T COG1129 444 IRELAA-EGKAILMISSELPELLGLSDRILVMREGRIVGELDREEAT 489 (500)
T ss_pred HHHHHH-CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 999987 5999999999999999999999999999999977776643
No 368
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=1.3e-27 Score=205.75 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=109.6
Q ss_pred CCcEEEEEcCCCCCccccCCceEEEEcCee-----------------ccccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGE-----------------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~-----------------~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+|++++|+||||||||||++.=...+.|.. ....++++++...... ++. ...+.+.+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~----r~~gl~~~ 100 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVE----RSRGLDYD 100 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEE----EecCCCHH
Confidence 478999999999999999542111122221 1123555554432110 000 01134443
Q ss_pred HHHH--HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 66 RRAE--LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 66 ~~~~--~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
...+ .+...++. .++++.+||+||+||++||+||+. +|+++||||||++||+..+..+.+.|.+++
T Consensus 101 ~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~ 180 (213)
T cd03279 101 QFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR 180 (213)
T ss_pred HHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 3332 22333332 367889999999999999999985 578999999999999999999999999886
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~ 162 (259)
+ .|.|||++||+++++..+||+++++++|.
T Consensus 181 ~-~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 181 T-ENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred h-CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 4 48999999999999999999999999985
No 369
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=6.5e-29 Score=204.80 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=139.9
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCC-CC-H
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAG-ID-P 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~-~~-~ 64 (259)
.||++-++|||||||||| +-+|+|.+.|.+. .+.-+|..|+..-...|.+..++.-... .. .
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a 103 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT 103 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence 589999999999999999 4799999999864 3445677766544445666665532211 11 1
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc-----CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK-----PF--KVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~-----~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
..++++...++++ +.+.+.+|||||.|||-+|...+. || ++||+|||.++||...+..+..+|.++|. .|
T Consensus 104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G 182 (248)
T COG4138 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QG 182 (248)
T ss_pred HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CC
Confidence 3456677778775 356789999999999999988864 33 59999999999999999999999999997 59
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.+|||++||++...+-+|++++++.|++...|..+|+...
T Consensus 183 ~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 183 LAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred cEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 9999999999999999999999999999999999998764
No 370
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-27 Score=196.80 Aligned_cols=146 Identities=20% Similarity=0.281 Sum_probs=124.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc-------ccEEEecccCCCCccCcHHHHHhc---cCC-C
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR-------REVAFAGFEVPIQMDVSAEKMIFG---VAG-I 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~-------~~i~~v~~~~~~~~~lt~~~~~~~---~~~-~ 62 (259)
.||++.|.|||||||||| +++|+|.+.|..+. +..-|++.++.+-..+|+.|++.. +++ .
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~ 106 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence 699999999999999999 59999999987542 345678888888888999876532 233 2
Q ss_pred CHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 63 DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 63 ~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
+...+.++++.+|+. .+.++++||-|||+||+|||-++..++++||||||++||..+...+-.++...+. .|..||+
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVll 185 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLL 185 (209)
T ss_pred chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 456678899999985 5789999999999999999999999999999999999999999999999998876 5888999
Q ss_pred EeCChhHHh
Q 024989 141 ATHIFDGLE 149 (259)
Q Consensus 141 ~sH~~~~~~ 149 (259)
+||..--+.
T Consensus 186 ttHq~l~~~ 194 (209)
T COG4133 186 TTHQPLPIA 194 (209)
T ss_pred ecCCccCCC
Confidence 999865443
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=9.7e-27 Score=203.48 Aligned_cols=155 Identities=20% Similarity=0.310 Sum_probs=106.0
Q ss_pred CCCcEEEEEcCCCCCccccCC-------------------------ce--------EEEEcCee-----------ccccE
Q 024989 2 VEPEMVKVLGRSAFHDTALTS-------------------------SG--------DLSYLGGE-----------WRREV 37 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~-------------------------~G--------~I~~~G~~-----------~~~~i 37 (259)
+.|++++|+||||||||||.. +| +|.+++.+ +++.+
T Consensus 21 ~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~i 100 (243)
T cd03272 21 FSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTI 100 (243)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEE
Confidence 468999999999999999931 12 33333311 12335
Q ss_pred EEecccCCCCc-cCcHHHHHh--ccCCCCHH------HHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHc----cC
Q 024989 38 AFAGFEVPIQM-DVSAEKMIF--GVAGIDPQ------RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL----KP 102 (259)
Q Consensus 38 ~~v~~~~~~~~-~lt~~~~~~--~~~~~~~~------~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~----~~ 102 (259)
++++++..++. .++..++.. ...+.... ...++.+.+++. .+.++.+||||||||++||+||+ .+
T Consensus 101 g~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~ 180 (243)
T cd03272 101 GLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP 180 (243)
T ss_pred ECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence 66655555544 244444221 11111110 011233333332 35678999999999999999996 36
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 103 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 103 p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
|+++||||||+|||+.+++.+++.|+++. + +.+||++||+. ++..+||++++|.
T Consensus 181 ~~illlDEp~~~ld~~~~~~~~~~l~~~~-~-~~~ii~~~h~~-~~~~~~d~i~~l~ 234 (243)
T cd03272 181 APFYLFDEIDAALDAQYRTAVANMIKELS-D-GAQFITTTFRP-ELLEVADKFYGVK 234 (243)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH-HHHhhCCEEEEEE
Confidence 89999999999999999999999999874 3 78888888885 5778999999885
No 372
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=3.2e-26 Score=236.21 Aligned_cols=163 Identities=22% Similarity=0.323 Sum_probs=138.1
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHH-HhccCCCCHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIK 72 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~-~~~~~~~~~~~~~~~l~ 72 (259)
+|+.++|+|+-|||||+|+ .+|++.+.|. ++|++|++.++.. |++++ ++|. ..++++.+++++
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-----iaYv~Q~pWI~ng-TvreNILFG~-~~d~~rY~~Vi~ 618 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-----VAYVPQQPWIQNG-TVRENILFGS-PYDEERYDKVIK 618 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----EEEeccccHhhCC-cHHHhhhcCc-cccHHHHHHHHH
Confidence 7999999999999999993 7999999985 9999999888766 45554 5554 357788888888
Q ss_pred HcCCCc-------------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 73 VLDIDL-------------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 73 ~~~l~~-------------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
...|.. ..+--+||||||||++||||+-+++|++|||-|.+++|....+.+++..-...- +++|+|
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~I 697 (1381)
T KOG0054|consen 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVI 697 (1381)
T ss_pred HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEE
Confidence 876631 124568999999999999999999999999999999999999887755544333 489999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++||.++.+.+ ||.|++|++|+|...|+.+|+.+
T Consensus 698 LVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 698 LVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EEeCchhhhhh-CCEEEEecCCeEecccCHHHHHh
Confidence 99999998887 89999999999999999999985
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=2.4e-26 Score=237.18 Aligned_cols=170 Identities=17% Similarity=0.226 Sum_probs=142.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||-++|+|+.||||||| +.+|+|.+||.++ |++++.+||+|.+|... ++.++-.+...+.+
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT-vR~NLDPf~e~sD~ 1243 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT-VRFNLDPFDEYSDD 1243 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc-cccccCcccccCHH
Confidence 689999999999999999 4899999999764 67899999999998764 45444333333445
Q ss_pred HHHHHHHHcCCC---------cccc----CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID---------LSWR----MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~---------~~~~----~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++-++|+..++. ++.. -.++|-||||-++|||||+++.+||+|||.|+++|+.+-..+.+.|++.-
T Consensus 1244 ~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F- 1322 (1381)
T KOG0054|consen 1244 EIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF- 1322 (1381)
T ss_pred HHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-
Confidence 555666665541 2333 35799999999999999999999999999999999999999999999865
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
.++|||.|-|.++.+.+ ||||+||++|++++.++|.++.++.
T Consensus 1323 -~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1323 -KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred -cCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCC
Confidence 37999999999999999 8999999999999999999998753
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.2e-26 Score=202.87 Aligned_cols=154 Identities=18% Similarity=0.303 Sum_probs=115.5
Q ss_pred CCcEEEEEcCCCCCccccC---------C-ceEEEEcCe-ec----------cccEEEecccC---------CCCccCcH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S-SGDLSYLGG-EW----------RREVAFAGFEV---------PIQMDVSA 52 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~-~G~I~~~G~-~~----------~~~i~~v~~~~---------~~~~~lt~ 52 (259)
.+.+++|+||||||||||. + .|++.+.|. ++ ...+++++|++ .+.+.+++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4789999999999999993 3 457777664 21 22577777763 22334554
Q ss_pred HHHH-hc------cCC--CCHHHHHHHHHHcCCCc----------------------cccCCcCCHHHHHHHHHHHHHc-
Q 024989 53 EKMI-FG------VAG--IDPQRRAELIKVLDIDL----------------------SWRMHKVSDGQRRRVQICMGLL- 100 (259)
Q Consensus 53 ~~~~-~~------~~~--~~~~~~~~~l~~~~l~~----------------------~~~~~~LSgG~~qrv~ia~al~- 100 (259)
.+.+ .+ ..+ ...+++.++++.+++.. +.++.+||+|||||++||+||+
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 4221 11 111 12456778889888752 2568899999999999999998
Q ss_pred ---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 101 ---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 101 ---~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
.+|+++||||||++||+..+..+++.|+++. .|.|||++||+. ++.+.||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~-~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKE-GMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCH-HHHHhCCEEEEEE
Confidence 5789999999999999999999999999874 388999999995 5556799998765
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.8e-27 Score=191.09 Aligned_cols=157 Identities=25% Similarity=0.369 Sum_probs=126.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee-c---------------cccEEEecccCCCCccCcHHHHHh
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE-W---------------RREVAFAGFEVPIQMDVSAEKMIF 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~-~---------------~~~i~~v~~~~~~~~~lt~~~~~~ 57 (259)
.||.+++=||||+||||| +|+|+|.+.-.. | ++.+||+.|-....|..+..+...
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVva 115 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVA 115 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHH
Confidence 589999999999999999 599999886421 1 345899988665556555444332
Q ss_pred c---cCCCCH----HHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 58 G---VAGIDP----QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 58 ~---~~~~~~----~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
. -.+.+. .++..++.+++++. .-.+.++|||+||||.|||.++.+-++|+|||||+.||..+++.+.++|
T Consensus 116 ePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli 195 (235)
T COG4778 116 EPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195 (235)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHH
Confidence 1 123332 34567899999862 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989 128 RKECEERGATIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
.+. +..|.++|=|-||-+.=+.+|||++.+..
T Consensus 196 ~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 196 REA-KARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred HHH-HhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 985 45799999999999888899999987753
No 376
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=3.3e-26 Score=195.35 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=106.9
Q ss_pred CCcEEEEEcCCCCCccccC------CceEEEE--cCee---c------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTALT------SSGDLSY--LGGE---W------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~--~G~~---~------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
.+.+.+|+||||||||||. ..|.... .|.. + ...+.+.++...++.. .......+
T Consensus 20 ~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~ 91 (198)
T cd03276 20 GPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--------PLCVLSQD 91 (198)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC--------cCCHHHHH
Confidence 3457899999999999995 2233221 1211 0 1224444433222220 01111224
Q ss_pred HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEE
Q 024989 66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE--RGATII 139 (259)
Q Consensus 66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al----~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~--~g~tii 139 (259)
.+.++++. .-..++++++||+|||||++||+|+ +.+|+++||||||+|||+..+..+.++|.+++.+ .+.|||
T Consensus 92 ~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~ii 170 (198)
T cd03276 92 MARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIF 170 (198)
T ss_pred HHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 45566665 2224678999999999999999999 5899999999999999999999999999987654 246999
Q ss_pred EEeCChhHHhccCCeEEEEeCCe
Q 024989 140 YATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~ 162 (259)
++||+++++..+ |+|.+|+.++
T Consensus 171 i~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 171 ITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred EECCcccccccc-cceeEEEecC
Confidence 999999999986 9999998754
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.8e-27 Score=205.23 Aligned_cols=153 Identities=14% Similarity=0.218 Sum_probs=112.3
Q ss_pred CcEEEEEcCCCCCccccCCceEEEEcCee---cc-ccEEEecccCCCCccCcHHHHHh---cc--------CCCCHH--H
Q 024989 4 PEMVKVLGRSAFHDTALTSSGDLSYLGGE---WR-REVAFAGFEVPIQMDVSAEKMIF---GV--------AGIDPQ--R 66 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~~~G~I~~~G~~---~~-~~i~~v~~~~~~~~~lt~~~~~~---~~--------~~~~~~--~ 66 (259)
.++++|+||||||||||.+.= ..++|.+ .+ ++++++++....++.+++.++.. .. ++...+ .
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i-~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 103 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSM-LFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNR 103 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCc
Confidence 479999999999999996420 0223432 12 45788887777777766554321 11 122111 1
Q ss_pred ----HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 024989 67 ----RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 136 (259)
Q Consensus 67 ----~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ 136 (259)
..++++.++++ .++++..||+|||||++||+|++. +|++++|||||+|||+.++..+++.|+++. .+.
T Consensus 104 ~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~ 181 (212)
T cd03274 104 FLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNA 181 (212)
T ss_pred eEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCC
Confidence 13455666664 356788999999999999999974 589999999999999999999999999874 367
Q ss_pred EEEEEeCChhHHhccCCeEEEEeC
Q 024989 137 TIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 137 tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
|+|++||+ .++..+||++++|..
T Consensus 182 ~~iivs~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 182 QFIVISLR-NNMFELADRLVGIYK 204 (212)
T ss_pred EEEEEECc-HHHHHhCCEEEEEEe
Confidence 89999999 467789999999975
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=5.6e-26 Score=194.75 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=104.7
Q ss_pred CcEEEEEcCCCCCccccCC------ceEEEEcC-------e-----eccccEEEecccCC-----CCccCcHHHHHhccC
Q 024989 4 PEMVKVLGRSAFHDTALTS------SGDLSYLG-------G-----EWRREVAFAGFEVP-----IQMDVSAEKMIFGVA 60 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~~------~G~I~~~G-------~-----~~~~~i~~v~~~~~-----~~~~lt~~~~~~~~~ 60 (259)
+.+++|+||||||||||+. .|...-.+ . .....++++++... ....+++.+.+..
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~-- 99 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF-- 99 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee--
Confidence 4599999999999999942 13322211 1 11234777776652 1112233332211
Q ss_pred CCCHHHHHHHHHHcCCCccccCCcCCHHHHHH------HHHHHHHccCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHHh
Q 024989 61 GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRR------VQICMGLLKPFKVLLLDEITVDLDVLARA-DLLRFLRKECEE 133 (259)
Q Consensus 61 ~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qr------v~ia~al~~~p~lllLDEPt~gLD~~~~~-~~~~~l~~~~~~ 133 (259)
.......+.+ ++++.+||+||+|| ++||+|++.+|+++||||||++||+..+. .+.++|.++.++
T Consensus 100 -~~~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~ 171 (204)
T cd03240 100 -CHQGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ 171 (204)
T ss_pred -echHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc
Confidence 1122222222 66789999999996 78999999999999999999999999999 999999988654
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHG 161 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G 161 (259)
.|.|||++||+++.+. .||+++.|.+.
T Consensus 172 ~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 172 KNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred cCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 4889999999998775 69999998653
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=1.1e-24 Score=220.82 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=95.8
Q ss_pred HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
.++++.+++. .++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+++.|+++.+ .|.|||++
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIii 889 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVI 889 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 4567777875 36788999999999999999999999 99999999999999999999999999864 59999999
Q ss_pred eCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 142 THIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
||+++++. .||+|++| ++|++++.|+++++...
T Consensus 890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 890 EHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred ecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 99999986 69999999 79999999999998754
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.92 E-value=1.4e-25 Score=179.09 Aligned_cols=105 Identities=27% Similarity=0.417 Sum_probs=88.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
+||+++|+|+|||||||| +++|.|.++|.++ ++.++|++|+..++..+|+.++. ..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~------~~~ 83 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE------SDE 83 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH------HHH
T ss_pred CCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc------ccc
Confidence 799999999999999999 4899999999764 35699999998888888887661 234
Q ss_pred HHHHHHHHcCCC--cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 024989 66 RRAELIKVLDID--LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 113 (259)
Q Consensus 66 ~~~~~l~~~~l~--~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~ 113 (259)
++.++++.+++. .+ +++.+||+|||||++||+||+.+|+++|||||||
T Consensus 84 ~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 84 RIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 567788888763 23 3449999999999999999999999999999997
No 381
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=8.7e-25 Score=192.35 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHcCCCc------------------------cccCCcCCHHHHHHHHHHHHHccC----CcEEEEeCCCCC
Q 024989 63 DPQRRAELIKVLDIDL------------------------SWRMHKVSDGQRRRVQICMGLLKP----FKVLLLDEITVD 114 (259)
Q Consensus 63 ~~~~~~~~l~~~~l~~------------------------~~~~~~LSgG~~qrv~ia~al~~~----p~lllLDEPt~g 114 (259)
+.+.++++++.+++.. ++++.+||+|||||++||++++.+ |+++||||||+|
T Consensus 110 s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~ 189 (247)
T cd03275 110 SLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAA 189 (247)
T ss_pred cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccccc
Confidence 4556677888887731 123488999999999999999864 899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989 115 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 115 LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
||+..+..+.+.|.++++ .|.|||++||+.+.+ .+||++++|.+
T Consensus 190 LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 190 LDNTNVGKVASYIREQAG-PNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred CCHHHHHHHHHHHHHhcc-CCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 999999999999999865 489999999997765 67999998864
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=4.6e-24 Score=225.21 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=95.0
Q ss_pred HHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHc---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 69 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLL---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 69 ~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~---~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
++++.+++. .++++.+|||||+||++||++|+ .+|++|||||||+|||+..++.++++|.++++ .|.|||++|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIs 869 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIE 869 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467778884 36789999999999999999997 69999999999999999999999999999875 599999999
Q ss_pred CChhHHhccCCeEEEEe------CCeEEEecChhHHHH
Q 024989 143 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKE 174 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~------~G~i~~~g~~~~~~~ 174 (259)
|+++++ .+||++++|. +|++++.|+++++..
T Consensus 870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 870 HNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999 7899999996 799999999999875
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=2.1e-24 Score=199.46 Aligned_cols=151 Identities=21% Similarity=0.318 Sum_probs=127.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCC--CC-HHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG--ID-PQRRAEL 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~--~~-~~~~~~~ 70 (259)
.||+++++||||.||||+ +++|. ...-+++|-||...-..+.|+++++..... +. .--..++
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~------~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei 439 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS------EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEI 439 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccccCCCCC------CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhh
Confidence 689999999999999999 46665 333468899887665566788887753211 11 1223567
Q ss_pred HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
++-|+++ .++++.+||||+.|||+||.||..+++++|||||++.||...+..+.+.|+++..+.++|.+++.||+-.+
T Consensus 440 ~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~ 519 (591)
T COG1245 440 VKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519 (591)
T ss_pred cCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehh
Confidence 7878775 57899999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred hccCCeEEEEe
Q 024989 149 ENWPSHIVYVA 159 (259)
Q Consensus 149 ~~~~drv~~l~ 159 (259)
..++||+++..
T Consensus 520 dyvsDr~ivF~ 530 (591)
T COG1245 520 DYVSDRLIVFE 530 (591)
T ss_pred hhhhceEEEEe
Confidence 99999999875
No 384
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=4.8e-24 Score=215.97 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=92.1
Q ss_pred HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHcc---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLK---PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~---~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
.++++.+++. .++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+++.|.++.+ .|.|||++
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi 887 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVI 887 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 3466667774 367889999999999999999997 5999999999999999999999999999864 59999999
Q ss_pred eCChhHHhccCCeEEEE------eCCeEEEecChhHH
Q 024989 142 THIFDGLENWPSHIVYV------AHGKLQLAMPMDKV 172 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~ 172 (259)
||+++++. .||++++| ++|++++.|+++++
T Consensus 888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999986 69999999 79999999998765
No 385
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.2e-25 Score=206.39 Aligned_cols=168 Identities=20% Similarity=0.181 Sum_probs=120.6
Q ss_pred CCcEEEEEcCCCCCccccC---CceEEEEcCeeccccEEEeccc-CCCCccCcHHHHHhcc----CCCCHHHHH-HHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---SSGDLSYLGGEWRREVAFAGFE-VPIQMDVSAEKMIFGV----AGIDPQRRA-ELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---~~G~I~~~G~~~~~~i~~v~~~-~~~~~~lt~~~~~~~~----~~~~~~~~~-~~l~~ 73 (259)
.|--++++|+||+|||||. ..|+|.....+-.-.--+++.. ..+..++...+++..- .+...+.+. ++|.-
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g 184 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAG 184 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh
Confidence 4667899999999999994 4577766654210000122111 1112233333333221 111223333 37888
Q ss_pred cCCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989 74 LDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 150 (259)
Q Consensus 74 ~~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~ 150 (259)
+|+.. .+++++||||+|.|++|||||..+||+||||||||.||..+..++.+.|.. .+.|+|+||||..++..
T Consensus 185 lGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t----~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 185 LGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT----WKITSLIVSHDRNFLNT 260 (582)
T ss_pred CCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh----CCceEEEEeccHHHHHH
Confidence 88862 568899999999999999999999999999999999999999988888864 45899999999999999
Q ss_pred cCCeEEEEeCCeEEE-ecChhHHHH
Q 024989 151 WPSHIVYVAHGKLQL-AMPMDKVKE 174 (259)
Q Consensus 151 ~~drv~~l~~G~i~~-~g~~~~~~~ 174 (259)
+|..|+.+++-++-. .|+.++...
T Consensus 261 V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 261 VCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999998877743 577776654
No 386
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=3.3e-24 Score=181.73 Aligned_cols=178 Identities=17% Similarity=0.266 Sum_probs=140.1
Q ss_pred CCCCcEEEEEcCCCCCccccC-------------CceEEEEcCeec------------cccEEEecccCCCC--ccCcH-
Q 024989 1 MVEPEMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW------------RREVAFAGFEVPIQ--MDVSA- 52 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~------------~~~i~~v~~~~~~~--~~lt~- 52 (259)
|-|||+-+++|.||||||..+ +.-...++..++ .+.|++++|++.-. +.-++
T Consensus 30 lnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG 109 (330)
T COG4170 30 LNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVG 109 (330)
T ss_pred eccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHH
Confidence 358999999999999999873 233333433321 12366778876542 22222
Q ss_pred HHHHhcc------------CCCCHHHHHHHHHHcCCCc-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCC
Q 024989 53 EKMIFGV------------AGIDPQRRAELIKVLDIDL-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 115 (259)
Q Consensus 53 ~~~~~~~------------~~~~~~~~~~~l~~~~l~~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gL 115 (259)
.+++... .++...++-+++..+|+.. ..++.+|--|+-|+|.||.|++.+|++||.||||+.+
T Consensus 110 ~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~ 189 (330)
T COG4170 110 RQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189 (330)
T ss_pred HHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCccc
Confidence 2333221 1233455678899999852 3478899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHhhh
Q 024989 116 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 178 (259)
Q Consensus 116 D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 178 (259)
+|.++.+++.+|..+++.+|+||+++|||+..+.++||++-||..|.-+++++.+++.+....
T Consensus 190 e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhH 252 (330)
T COG4170 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHH 252 (330)
T ss_pred CccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCC
Confidence 999999999999999988899999999999999999999999999999999999999876543
No 387
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=4.7e-24 Score=216.75 Aligned_cols=170 Identities=22% Similarity=0.294 Sum_probs=139.5
Q ss_pred CCCcEEEEEcCCCCCccccC-----------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH-h----ccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI-F----GVA 60 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~-~----~~~ 60 (259)
.+|-.++|+|.||+|||||+ -+|+|.++|.+. +|.+||+.|+....+.+||+|-+ + +.+
T Consensus 815 kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp 894 (1391)
T KOG0065|consen 815 KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLP 894 (1391)
T ss_pred cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCC
Confidence 46779999999999999995 489999999864 46789998877767899998743 2 222
Q ss_pred -CCCH----HHHHHHHHHcCCC--ccccC----CcCCHHHHHHHHHHHHHccCC-cEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 61 -GIDP----QRRAELIKVLDID--LSWRM----HKVSDGQRRRVQICMGLLKPF-KVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 61 -~~~~----~~~~~~l~~~~l~--~~~~~----~~LSgG~~qrv~ia~al~~~p-~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
..+. +.++++++.+++. .+.-+ ..||..||+|+.||--|+.+| -||+|||||+|||..+...++++++
T Consensus 895 ~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lr 974 (1391)
T KOG0065|consen 895 KEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLR 974 (1391)
T ss_pred CcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHH
Confidence 2222 3367899999986 34434 459999999999999999999 8999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChh-HHhccCCeEEEEe-CCeEEEecChhHH
Q 024989 129 KECEERGATIIYATHIFD-GLENWPSHIVYVA-HGKLQLAMPMDKV 172 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~-~~~~~~drv~~l~-~G~i~~~g~~~~~ 172 (259)
+++. .|.||+.+-|... .+.+-.|++++|+ .|+.+..|+..+-
T Consensus 975 kla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 975 KLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred HHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 9986 6999999999984 3555679999997 4789999988653
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=5e-23 Score=193.52 Aligned_cols=103 Identities=24% Similarity=0.254 Sum_probs=88.3
Q ss_pred HHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 69 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 69 ~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
.++..++.. .++++.+||||||+|++|||+|..+|++|||||||+|||+.++..+-+.|.++- .+ +++++||+-
T Consensus 203 ~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~-~lVi~sh~Q 279 (614)
T KOG0927|consen 203 KILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RI-ILVIVSHSQ 279 (614)
T ss_pred HHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--Cc-eEEEEecch
Confidence 445545543 367889999999999999999999999999999999999999999999887642 22 899999999
Q ss_pred hHHhccCCeEEEEeCCe-EEEecChhHHHH
Q 024989 146 DGLENWPSHIVYVAHGK-LQLAMPMDKVKE 174 (259)
Q Consensus 146 ~~~~~~~drv~~l~~G~-i~~~g~~~~~~~ 174 (259)
+++..+|++|+.+++++ +...|+.+....
T Consensus 280 Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 280 DFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred hhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 99999999999999999 556888887654
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=4e-23 Score=194.21 Aligned_cols=164 Identities=20% Similarity=0.232 Sum_probs=124.1
Q ss_pred CcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCC--CccCcHHHHHhc-cCC-CCHHHHHHH
Q 024989 4 PEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPI--QMDVSAEKMIFG-VAG-IDPQRRAEL 70 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~--~~~lt~~~~~~~-~~~-~~~~~~~~~ 70 (259)
++.++++||||+||||| ++.|.|.-.-+ ..+++..|.... ..+.+.-+++.. +.. ...+.+..+
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H---~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~i 492 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH---NKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI 492 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhcccccccccccccc---ccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHH
Confidence 56789999999999999 35665543322 123333333222 223333444432 222 334667889
Q ss_pred HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
+.+||+. ...++.+||+|||.||.+|+.++..|.+|||||||+|||..+...+-+.|.++ ..++|++|||+-.
T Consensus 493 lgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrl 568 (614)
T KOG0927|consen 493 LGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRL 568 (614)
T ss_pred HHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhH
Confidence 9999996 35688999999999999999999999999999999999999999999988764 3489999999999
Q ss_pred HhccCCeEEEEeCCeEEE-ecChhHHHH
Q 024989 148 LENWPSHIVYVAHGKLQL-AMPMDKVKE 174 (259)
Q Consensus 148 ~~~~~drv~~l~~G~i~~-~g~~~~~~~ 174 (259)
+.+++++|++..+|.+.. .|+......
T Consensus 569 I~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 569 ISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred HHHHHHHhHhhccCceeecCccHHHHHH
Confidence 999999999999887754 677766544
No 390
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=2e-23 Score=190.28 Aligned_cols=157 Identities=22% Similarity=0.294 Sum_probs=124.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------ccEEEecccCCCCccCcHHHHHhccCC-CCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------REVAFAGFEVPIQMDVSAEKMIFGVAG-IDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------~~i~~v~~~~~~~~~lt~~~~~~~~~~-~~~ 64 (259)
+||+|.|+|.|||||||| |++|+|.++|+++. +-++-++.+..+|+.+ .+..+ .++
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l------l~~e~~as~ 421 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL------LGPEGKASP 421 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh------hCCccCCCh
Confidence 699999999999999999 69999999998652 1122233332332221 22223 356
Q ss_pred HHHHHHHHHcCCC-----cccc--CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 65 QRRAELIKVLDID-----LSWR--MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 65 ~~~~~~l~~~~l~-----~~~~--~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
+.++.+++++.+. .+.. .-+||.|||+|+++.-|++-+-++++|||=.+..||..|+.+++.+--+.++.|+|
T Consensus 422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 7788888888773 1222 45899999999999999999999999999999999999999999888877888999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
|+.||||-. -...+||++.+++|++++.
T Consensus 502 I~aIsHDd~-YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 502 IFAISHDDH-YFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred EEEEecCch-hhhhHHHHHHHhcCceeec
Confidence 999999955 4556999999999999874
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.6e-22 Score=186.89 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHH--HHH-hccCCCCHHHHHHHHHH
Q 024989 6 MVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE--KMI-FGVAGIDPQRRAELIKV 73 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~--~~~-~~~~~~~~~~~~~~l~~ 73 (259)
-.+++|+||+||||+. ..|.+.+.+ +.+++|..|.-.-+.++.+. ++. ..++|..++.+++-+..
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeecc---cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 3578999999999992 455554443 46788877754444444333 233 23456778889999999
Q ss_pred cCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989 74 LDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 150 (259)
Q Consensus 74 ~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~ 150 (259)
||++ ..+.+.+||||||-||++|.+...+|-+|+||||||.||..+...+-+.|+.+ +..||+||||.+++..
T Consensus 469 ~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 469 FGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISS 544 (582)
T ss_pred cCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhh
Confidence 9996 24568999999999999999999999999999999999999999988888765 3479999999999999
Q ss_pred cCCeEEEEeCCeEEE-ecChhH
Q 024989 151 WPSHIVYVAHGKLQL-AMPMDK 171 (259)
Q Consensus 151 ~~drv~~l~~G~i~~-~g~~~~ 171 (259)
+|+.+|+.++|++.. .|...+
T Consensus 545 ~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 545 LCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred cCceeEEEcCCcEEeeeccHHH
Confidence 999999999999976 344433
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.87 E-value=8.4e-22 Score=184.00 Aligned_cols=170 Identities=19% Similarity=0.286 Sum_probs=142.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccC---CCCccCcHHHHH-hcc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEV---PIQMDVSAEKMI-FGV 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~---~~~~~lt~~~~~-~~~ 59 (259)
+||+++|.|-.|-|-+-| +.+|+|.++|++. ...++|+|.+. .+.+.+++.+++ ...
T Consensus 283 ~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~ 362 (501)
T COG3845 283 AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362 (501)
T ss_pred cCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhh
Confidence 699999999999999988 3579999999874 13589999765 355677776543 221
Q ss_pred --------CC-CCHH----HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 60 --------AG-IDPQ----RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 60 --------~~-~~~~----~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
.+ .++. ...++++.|++. ...++.+||||++||+-+||-|..+|++||+-.||.|||..+.+.+
T Consensus 363 ~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I 442 (501)
T COG3845 363 HDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI 442 (501)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHH
Confidence 11 2332 345789999884 4567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
.+.|.+..+ .|++|+++|-|++++..+||||.+|.+|+++...++++..
T Consensus 443 ~~~l~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~t 491 (501)
T COG3845 443 HERLLELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEAT 491 (501)
T ss_pred HHHHHHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccCC
Confidence 999999865 6999999999999999999999999999999988887643
No 393
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=6.8e-22 Score=170.57 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=73.3
Q ss_pred cccCCcCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCChhHHhccCC
Q 024989 79 SWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG-ATIIYATHIFDGLENWPS 153 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al----~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g-~tiii~sH~~~~~~~~~d 153 (259)
+..+.+||+||||++.++++| +.+|+++|+||||+|||+..+..+++.|.+..++.| .|+|++||++.++..+||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 446789999999998877554 589999999999999999999999999999865425 589999999988888887
Q ss_pred --eEEEEeCCeE
Q 024989 154 --HIVYVAHGKL 163 (259)
Q Consensus 154 --rv~~l~~G~i 163 (259)
+|++|.+|+-
T Consensus 201 ~~~v~~l~~g~~ 212 (213)
T cd03277 201 KMTVLCVYNGPH 212 (213)
T ss_pred ceEEEEEecCcc
Confidence 6888898874
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=5.1e-21 Score=160.80 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989 85 VSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 85 LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
||+||+||++||++++ .+|+++|+|||+++||+..+..+.+.|.++.+ .|.|+|++||+.+.+. .+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 69999999999999999999999999998865 4899999999998775 7999999875
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=1.5e-21 Score=166.58 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=74.3
Q ss_pred cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
.+...++|+||+|++.|++++ .+|+++|+|||++|+|+..+..++ .+++++. +.|.|+|++||+ .++..+||+++.
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~-~~~~~vi~~tH~-~~l~~~~d~~~~ 162 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL-ERGALVIATTHY-GELKAYAYKREG 162 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECCH-HHHHHHHhcCCC
Confidence 456789999999999999885 899999999999999999999986 4677665 458999999998 567789999999
Q ss_pred EeCCeEEEe
Q 024989 158 VAHGKLQLA 166 (259)
Q Consensus 158 l~~G~i~~~ 166 (259)
|++|++..+
T Consensus 163 l~~g~l~~~ 171 (200)
T cd03280 163 VENASMEFD 171 (200)
T ss_pred eEEEEEEEe
Confidence 999999876
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.4e-20 Score=173.65 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=120.8
Q ss_pred EEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCC--CCccCcHHHHHhccCCCCHHHHHHHHHHc
Q 024989 6 MVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGVAGIDPQRRAELIKVL 74 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~--~~~~lt~~~~~~~~~~~~~~~~~~~l~~~ 74 (259)
-++|+||||.|||||+ +.|+.+-+ .+-+|||..|... +...-|.-+++.....++.+.+...|-.|
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---HRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCCCCCcchhhcc---ceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh
Confidence 5899999999999993 44443222 1235888766532 33344455666544455667778888899
Q ss_pred CCCc---cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhcc
Q 024989 75 DIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW 151 (259)
Q Consensus 75 ~l~~---~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~ 151 (259)
|+.. .-++..|||||+-||++|-.-+..|++|||||||++||+.+...+.+.|.++ ...|||+|||-..+.+.
T Consensus 692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVET 767 (807)
T ss_pred hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeeec
Confidence 9853 2367899999999999999999999999999999999999999999998875 34799999999888887
Q ss_pred CCeEEEEeCCeEEE-ecChhHH
Q 024989 152 PSHIVYVAHGKLQL-AMPMDKV 172 (259)
Q Consensus 152 ~drv~~l~~G~i~~-~g~~~~~ 172 (259)
-..+||+.+-.|-. +|+-++.
T Consensus 768 ~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 768 DCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred CceEEEEccCChhhccccHHHH
Confidence 77888888765533 4555444
No 397
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=2.6e-20 Score=188.90 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=92.8
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+..+++. +++++.+|||||+|||.||++|+.+| +++||||||+|||+..+..++++|+++.+ .|.|||+|+|+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd 548 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHD 548 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence 34556664 46789999999999999999999986 89999999999999999999999999865 59999999999
Q ss_pred hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989 145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE 174 (259)
Q Consensus 145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~ 174 (259)
++++. +||+|++| ++|+|++.|+++++..
T Consensus 549 ~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 549 EETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred HHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99986 89999999 8999999999988753
No 398
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=2.4e-20 Score=189.47 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=93.9
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+++.+|+. +++++.+|||||+|||.||++|+.+| +++||||||+|||+..+..++++|+++.+ .|.|||+|+|+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~ 550 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHD 550 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 46667775 47889999999999999999999997 99999999999999999999999999864 69999999999
Q ss_pred hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989 145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE 174 (259)
Q Consensus 145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~ 174 (259)
++++. .||+|++| ++|+++..|+++++..
T Consensus 551 ~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 551 EDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99987 59999999 9999999999998854
No 399
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.83 E-value=5.1e-20 Score=177.55 Aligned_cols=150 Identities=22% Similarity=0.238 Sum_probs=116.1
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC--CCCHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAEL 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~~~~~~~~~~ 70 (259)
.||.+.|.|+||||||||. -+|.|..-. ...+-|+||.|.+... |.++.+. ... ..+.++..++
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---DSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC---CCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHH
Confidence 6999999999999999993 467776541 2347899988655444 6666553 221 2566778888
Q ss_pred HHHcCCC-----cc---ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 71 IKVLDID-----LS---WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 71 l~~~~l~-----~~---~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
|..++|+ ++ +--..||+||||||++||.|+++|++++|||-|++||+.+...+++.+++.+ .+.|||-|+
T Consensus 494 L~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~ 571 (604)
T COG4178 494 LHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVG 571 (604)
T ss_pred HHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEec
Confidence 9888884 11 1125799999999999999999999999999999999999999999998754 589999999
Q ss_pred CChhHHhccCCeEEEEe
Q 024989 143 HIFDGLENWPSHIVYVA 159 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~ 159 (259)
|... +..+.++.+-+.
T Consensus 572 Hr~t-l~~~h~~~l~l~ 587 (604)
T COG4178 572 HRPT-LWNFHSRQLELL 587 (604)
T ss_pred cchh-hHHHHhhheeec
Confidence 9865 555666655443
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=1.3e-20 Score=174.57 Aligned_cols=93 Identities=25% Similarity=0.385 Sum_probs=86.4
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+++++.++|. .++.+.+||||+-||++||.+++++++++++||||+-||...+-...+.|+++++. +++||++.||
T Consensus 194 ~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHD 272 (591)
T COG1245 194 FDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHD 272 (591)
T ss_pred HHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEech
Confidence 56788888885 58889999999999999999999999999999999999999999999999999864 8999999999
Q ss_pred hhHHhccCCeEEEEeC
Q 024989 145 FDGLENWPSHIVYVAH 160 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~ 160 (259)
+..+.-++|-|.++..
T Consensus 273 LavLD~lsD~vhI~YG 288 (591)
T COG1245 273 LAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHhhheeEEEec
Confidence 9999999999988864
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.81 E-value=8.6e-20 Score=150.80 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 84 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
+||+||+||+.||++|+. +|+++|+|||++|+|+..+..+.+.+.++..+ |.++|++||+.+.+. .+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 499999999999999986 78999999999999999999999999988765 899999999999876 589999986
Q ss_pred C
Q 024989 160 H 160 (259)
Q Consensus 160 ~ 160 (259)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=6e-19 Score=172.54 Aligned_cols=104 Identities=22% Similarity=0.315 Sum_probs=91.8
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
.|..+||. +.++..+|||||.|||-||.-|.... -++||||||+||-+.-.+.+++.|.++.. .|.|||+|.|
T Consensus 805 tL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEH 883 (935)
T COG0178 805 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEH 883 (935)
T ss_pred HHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 34445664 56788999999999999999999887 89999999999999999999999999986 6999999999
Q ss_pred ChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 144 IFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 144 ~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
+|+.+. .||+|+-| ..|+|++.|+|+++...
T Consensus 884 NLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 884 NLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred ccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 999665 59999988 56899999999999763
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.8e-19 Score=157.38 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=69.1
Q ss_pred CcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989 83 HKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
..|||||+||++||++++. +|+++||||||++||+..+..+.+.|.+++ .+.|+|++||+++. ..+||++++|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~--~~~tii~isH~~~~-~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS--RSHQVLCITHLPQV-AAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEechHHH-HHhcCcEEEE
Confidence 3599999999999987654 999999999999999999999999999875 37899999999985 5689999999
Q ss_pred eCCeE
Q 024989 159 AHGKL 163 (259)
Q Consensus 159 ~~G~i 163 (259)
.+|..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 88643
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=3.2e-20 Score=161.13 Aligned_cols=140 Identities=11% Similarity=0.112 Sum_probs=100.0
Q ss_pred CCcEEEEEcCCCCCccccCC-ceEEEEcCeeccccEE-EecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCccc
Q 024989 3 EPEMVKVLGRSAFHDTALTS-SGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW 80 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~-~G~I~~~G~~~~~~i~-~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 80 (259)
+++++.|+||||+|||||.. -|.+.+ ..++| |+|..... + ...++++..+++. +.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~-----la~~g~~vpa~~~~---~--------------~~~~~il~~~~l~-d~ 85 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVL-----MAQIGCFVPCDSAD---I--------------PIVDCILARVGAS-DS 85 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-----HHHhCCCcCcccEE---E--------------eccceeEeeeccc-cc
Confidence 67899999999999999752 221111 11222 33322110 0 0123455556554 33
Q ss_pred cCCcCCHHHHHHHHHHHHH--ccCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989 81 RMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 155 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al--~~~p~lllLDEP---t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv 155 (259)
....+|.|++|++.+++++ +.+|+++||||| |+++|+.+... ..++.+.++.|.++|++||+ .++.++||++
T Consensus 86 ~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~-~el~~~~~~~ 162 (222)
T cd03285 86 QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF-HELTALADEV 162 (222)
T ss_pred hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEech-HHHHHHhhcC
Confidence 4678999999999999999 899999999999 99999988854 34444443358899999996 7788899999
Q ss_pred EEEeCCeEEEecC
Q 024989 156 VYVAHGKLQLAMP 168 (259)
Q Consensus 156 ~~l~~G~i~~~g~ 168 (259)
..+++|++...++
T Consensus 163 ~~i~~g~~~~~~~ 175 (222)
T cd03285 163 PNVKNLHVTALTD 175 (222)
T ss_pred CCeEEEEEEEEEe
Confidence 9999999987654
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=8.5e-19 Score=185.66 Aligned_cols=102 Identities=16% Similarity=0.255 Sum_probs=91.5
Q ss_pred HHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 71 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 71 l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
+..+++. +++.+.+|||||+|||.||+||+.+| +++||||||+|||+..+..++++|+++.+ .|.|||+||||+
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIvVeHd~ 538 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLLVEHDE 538 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH
Confidence 4456665 36788999999999999999999999 89999999999999999999999999875 599999999999
Q ss_pred hHHhccCCeEEEEe------CCeEEEecChhHHHH
Q 024989 146 DGLENWPSHIVYVA------HGKLQLAMPMDKVKE 174 (259)
Q Consensus 146 ~~~~~~~drv~~l~------~G~i~~~g~~~~~~~ 174 (259)
+ +.++||+|++|. +|++++.|+++++..
T Consensus 539 ~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~ 572 (1809)
T PRK00635 539 Q-MISLADRIIDIGPGAGIFGGEVLFNGSPREFLA 572 (1809)
T ss_pred H-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHhh
Confidence 9 568899999996 789999999988753
No 406
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=9.4e-19 Score=178.50 Aligned_cols=172 Identities=25% Similarity=0.336 Sum_probs=144.4
Q ss_pred CCcEEEEEcCCCCCccccC------------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH---hccC--
Q 024989 3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI---FGVA-- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~---~~~~-- 60 (259)
+||++.++||.|||||||. ..|+|.++|.+. ++.++|.+|+...++.+|+++.+ ....
T Consensus 140 pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~ 219 (1391)
T KOG0065|consen 140 PGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGP 219 (1391)
T ss_pred CCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCC
Confidence 6899999999999999993 478999999864 35689999998889999998643 2211
Q ss_pred -----CCCHHH-----HHHHHHHcCCC--c-----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH
Q 024989 61 -----GIDPQR-----RAELIKVLDID--L-----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 123 (259)
Q Consensus 61 -----~~~~~~-----~~~~l~~~~l~--~-----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~ 123 (259)
..++.+ .+.+++.+|++ . +...+..|||||+||++|-+++.+++++.+||+|+|||..+.-++
T Consensus 220 ~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~i 299 (1391)
T KOG0065|consen 220 GSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQI 299 (1391)
T ss_pred ccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHH
Confidence 122222 34688999985 2 345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 124 LRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
.+.|+++++..+.|.+++-|.. +++..+.|.|.+|.+|+++..|+.++...
T Consensus 300 ik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 300 IKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred HHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999999887788888887776 56888899999999999999999998765
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.75 E-value=4.2e-19 Score=151.62 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=71.1
Q ss_pred ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989 80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
.....+|.+++| +..+.+++.+|+++||||||+|+|+..+..+.. +++.+. +.+.++|++||+.+.+. .|+++..+
T Consensus 87 ~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l 163 (202)
T cd03243 87 DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL-EKGCRTLFATHFHELAD-LPEQVPGV 163 (202)
T ss_pred CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEECChHHHHH-HhhcCCCe
Confidence 345678877776 666678889999999999999999998887754 555554 46899999999987665 67898899
Q ss_pred eCCeEEEecChhH
Q 024989 159 AHGKLQLAMPMDK 171 (259)
Q Consensus 159 ~~G~i~~~g~~~~ 171 (259)
..+++...++..+
T Consensus 164 ~~~~~~~~~~~~~ 176 (202)
T cd03243 164 KNLHMEELITTGG 176 (202)
T ss_pred EEEEEEEEecCCe
Confidence 9999988776533
No 408
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=2.6e-17 Score=156.23 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=113.1
Q ss_pred CCCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHH-HHHhcc-------CCCCH
Q 024989 2 VEPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV-------AGIDP 64 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~-~~~~~~-------~~~~~ 64 (259)
..|..+.|+||||||||+|. .+|++.--...-.+.+-|+||.|..... |.+ ++++.. ...+.
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d 537 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASD 537 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc-chhheeeccCccccccccCCCH
Confidence 46899999999999999992 7888877655444668999998644333 444 344431 12344
Q ss_pred HHHHHHHHHcCCC--------ccc-----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID--------LSW-----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~--------~~~-----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.+.|+.+++. .+. -...||+|||||+++||.+.++|++-||||-|+++|......+++.++
T Consensus 538 ~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r--- 614 (659)
T KOG0060|consen 538 EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR--- 614 (659)
T ss_pred HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH---
Confidence 5666666665542 111 135799999999999999999999999999999999977776666654
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
+.|+|.|-|+|.-.. .++=|.++-|+.
T Consensus 615 -~~giT~iSVgHRkSL-~kfHd~~L~~~g 641 (659)
T KOG0060|consen 615 -EMGITFISVGHRKSL-WKFHDYVLRMDG 641 (659)
T ss_pred -HcCCeEEEeccHHHH-HhhhhEEEEecC
Confidence 469999999999774 456677877764
No 409
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=4.2e-17 Score=149.97 Aligned_cols=159 Identities=25% Similarity=0.334 Sum_probs=122.9
Q ss_pred CCcEEEEEcCCCCCcccc-----------------CCceEEEEcCeeccccEEEecccC-CCCccCcHHHHHhccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------------TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------------~~~G~I~~~G~~~~~~i~~v~~~~-~~~~~lt~~~~~~~~~~~~~ 64 (259)
.||+++|+|+||+||||+ +|||.|.+--... .+.+|.+. +-+...|+.+.+..-.+ +.
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~---~a~iPge~Ep~f~~~tilehl~s~tG-D~ 483 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---SALIPGEYEPEFGEVTILEHLRSKTG-DL 483 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch---hhccCcccccccCchhHHHHHhhccC-ch
Confidence 599999999999999999 3677666543221 12333221 11223344343332222 33
Q ss_pred HHHHHHHHHcCCC---c-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 65 QRRAELIKVLDID---L-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 65 ~~~~~~l~~~~l~---~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
....+++...|+. + .+++++||-|||.|+.||++++..|.+++.||-.+.||+.+...+..-|.+++++.|.|+++
T Consensus 484 ~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTliv 563 (593)
T COG2401 484 NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563 (593)
T ss_pred hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 3467889999985 2 45789999999999999999999999999999999999999999999999999989999999
Q ss_pred EeCChhHHhcc-CCeEEEEeCCeEEE
Q 024989 141 ATHIFDGLENW-PSHIVYVAHGKLQL 165 (259)
Q Consensus 141 ~sH~~~~~~~~-~drv~~l~~G~i~~ 165 (259)
+||..+....+ -|.++.+.-|....
T Consensus 564 vThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 564 VTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred EecCHHHHhccCCceeEEeecccccc
Confidence 99999999998 78888888777643
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=7.6e-19 Score=162.33 Aligned_cols=101 Identities=25% Similarity=0.237 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
++.++|.-+|++ .+++...+|||+|.||+|||||..+|-+|.|||||++||..+..++-++|.-+ .+|++|+|
T Consensus 391 rARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVS 466 (807)
T KOG0066|consen 391 RARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVS 466 (807)
T ss_pred HHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEe
Confidence 456788888885 35778899999999999999999999999999999999999999888888653 46999999
Q ss_pred CChhHHhccCCeEEEEeCCeEEE-ecChh
Q 024989 143 HIFDGLENWPSHIVYVAHGKLQL-AMPMD 170 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~~G~i~~-~g~~~ 170 (259)
||-.++..+|+.|+.|++-++.. .|+..
T Consensus 467 HDQgFLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 467 HDQGFLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred cccchHHHHHHHHhhhhhhhhhhhcchHH
Confidence 99999999999999999988865 35544
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.5e-17 Score=145.87 Aligned_cols=77 Identities=26% Similarity=0.353 Sum_probs=67.1
Q ss_pred CCcCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 82 MHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
...+|+||||+++||++|+ .+|+++||||||++||+..+..+++.+.++ + .+++++|+.+.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence 4568999999999999985 799999999999999999999999998753 2 4777888888888888
Q ss_pred ---CeEEEEeCCeE
Q 024989 153 ---SHIVYVAHGKL 163 (259)
Q Consensus 153 ---drv~~l~~G~i 163 (259)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.72 E-value=8.2e-18 Score=143.71 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=83.8
Q ss_pred CCcEEEEEcCCCCCccccCC--ceEEE--EcCeeccccEEEecccCCCCccCcHHHHH-hccCCC--CHHHHHHHHHHcC
Q 024989 3 EPEMVKVLGRSAFHDTALTS--SGDLS--YLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGI--DPQRRAELIKVLD 75 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~--~G~I~--~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~--~~~~~~~~l~~~~ 75 (259)
.|++++|+||||||||||.. .|.+. ..|..+... .+++|...++..+++.+.+ .+.... ..+++.++++.++
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~-~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~ 102 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCAS-SFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAK 102 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecC-ccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhcc
Confidence 47899999999999999952 33332 245443211 2333433455666655433 222110 1122344444443
Q ss_pred CCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhcc--C
Q 024989 76 IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENW--P 152 (259)
Q Consensus 76 l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~--~ 152 (259)
. .+|+++|+||||+|+|+..+..+. .+++++.+ .|.|+|++||+++++..+ .
T Consensus 103 ~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~~~~ 157 (199)
T cd03283 103 K------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLLDLD 157 (199)
T ss_pred C------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhhhcC
Confidence 1 699999999999999999998764 56777754 589999999999998776 4
Q ss_pred CeEEEE
Q 024989 153 SHIVYV 158 (259)
Q Consensus 153 drv~~l 158 (259)
++|-.+
T Consensus 158 ~~v~~~ 163 (199)
T cd03283 158 SAVRNY 163 (199)
T ss_pred CCeEEE
Confidence 444443
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=9.9e-17 Score=137.58 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=85.6
Q ss_pred CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEE-ecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC--cc
Q 024989 3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF-AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LS 79 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~-v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~ 79 (259)
+|+++.|+||||+||||+... +.+..+..++|+ + +..+..++.. ++++..++.. ..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~----i~~~~~la~~G~~v---pa~~~~l~~~--------------d~I~~~~~~~d~~~ 86 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQ----IALLAIMAQIGCFV---PAEYATLPIF--------------NRLLSRLSNDDSME 86 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHH----HHHHHHHHHcCCCc---chhhcCccCh--------------hheeEecCCccccc
Confidence 469999999999999998532 111111222332 1 1122222222 2233333332 34
Q ss_pred ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989 80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~~~~d 153 (259)
+..+++|+|++|. ..+.+++.+|+++|||||++|+|+.....+ +.+++.+.+ .|.++|++||+.+.+..+++
T Consensus 87 ~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 87 RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence 5678999999975 556668899999999999999999776654 456666654 59999999999998887664
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.64 E-value=3e-17 Score=138.47 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=59.8
Q ss_pred cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
.+..++||+|++|...++. .+.+|+++|+|||++|+|+.....+. .+++.+.++.|.++|++||+++ +.++|++.--
T Consensus 56 ~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~~ 133 (185)
T smart00534 56 AQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHPG 133 (185)
T ss_pred hccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCcc
Confidence 4567889998887444333 24599999999999999999877764 5566555424889999999995 6677875333
Q ss_pred EeCCeE
Q 024989 158 VAHGKL 163 (259)
Q Consensus 158 l~~G~i 163 (259)
++++.+
T Consensus 134 v~~~~~ 139 (185)
T smart00534 134 VRNLHM 139 (185)
T ss_pred ceEEEE
Confidence 444443
No 415
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.59 E-value=1.8e-15 Score=142.61 Aligned_cols=146 Identities=15% Similarity=0.263 Sum_probs=98.9
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHH-HHHhc-------cCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFG-------VAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~-~~~~~-------~~~~~~~ 65 (259)
+|-.+.|+||||||||+|. ..|...+ +....+-|+||.|..- .-|.+ +.++. ..+...+
T Consensus 507 ~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~ 582 (728)
T KOG0064|consen 507 PGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---PRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ 582 (728)
T ss_pred CCceEEEECCCCccHHHHHHHHhccCcccCCeeec---CCCcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHH
Confidence 5778999999999999993 3333322 2345588898875321 11111 22221 1234445
Q ss_pred HHHHHHHHcCCC------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 66 RRAELIKVLDID------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 66 ~~~~~l~~~~l~------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
+...++..+.+. .+|+ .-||||+|||+++||.+.|+|+..+|||-|++.-+.....+++..+ .
T Consensus 583 dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~ 657 (728)
T KOG0064|consen 583 DLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----D 657 (728)
T ss_pred HHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----h
Confidence 555666655442 1222 4699999999999999999999999999999999877766666554 4
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEE
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
.|.+.|-+||....... -.+++-.
T Consensus 658 ~gi~llsithrpslwk~-h~~ll~~ 681 (728)
T KOG0064|consen 658 AGISLLSITHRPSLWKY-HTHLLEF 681 (728)
T ss_pred cCceEEEeecCccHHHH-HHHHHhc
Confidence 69999999999876543 3444433
No 416
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=4.4e-15 Score=154.17 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=76.5
Q ss_pred cccCCcCCHHHHHHHHHHHHHcc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
.+++.+|||||++||+||+||+. +|++|||||||+|||+.+...+++.|.++.. .|.+|+||||++++.
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence 45789999999999999999985 7999999999999999999999999999875 699999999999999
Q ss_pred hccCCeEEEEeCC
Q 024989 149 ENWPSHIVYVAHG 161 (259)
Q Consensus 149 ~~~~drv~~l~~G 161 (259)
..+||+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999754
No 417
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.56 E-value=1.2e-14 Score=141.90 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=70.7
Q ss_pred CcCCHHHHHHHHHHHHHccC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989 83 HKVSDGQRRRVQICMGLLKP----FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~~~----p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
..|||||+||++||++++.. |++|||||||+|||+..+..+.+.|+++. .|.+||++||++..+. +||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~--~~~~vi~iTH~~~~~~-~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS--ERHQVLCVTHLPQVAA-HADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEEChHHHHH-hcCeEEEE
Confidence 47999999999999999985 69999999999999999999999999985 3799999999998875 79999999
Q ss_pred eCCe
Q 024989 159 AHGK 162 (259)
Q Consensus 159 ~~G~ 162 (259)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9864
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.55 E-value=2.9e-15 Score=129.59 Aligned_cols=78 Identities=24% Similarity=0.218 Sum_probs=56.1
Q ss_pred HHHHHHHH--ccCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 92 RVQICMGL--LKPFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 92 rv~ia~al--~~~p~lllLDEP---t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
+..++.++ +.+|+++||||| |+++|+... .+.++..+.+..+.++|++||+. ++..++|++..+.+|++...
T Consensus 97 ~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~ 173 (216)
T cd03284 97 MVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVK 173 (216)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEE
Confidence 34455555 569999999999 888898653 23444444332388999999996 55668898888888888776
Q ss_pred cChhHH
Q 024989 167 MPMDKV 172 (259)
Q Consensus 167 g~~~~~ 172 (259)
+..+++
T Consensus 174 ~~~~~l 179 (216)
T cd03284 174 EKGGGV 179 (216)
T ss_pred eeCCeE
Confidence 665554
No 419
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.55 E-value=1.1e-14 Score=141.69 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=74.4
Q ss_pred HHHHHcCCCccccCCcCCHHHHHHHHHHHHHc----------cCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 69 ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----------KPFKVLLLDEIT-VDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 69 ~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~----------~~p~lllLDEPt-~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
..+...|. ..+.+.+|||||+||++||+||+ .+|+++|||||| ++||+..+..++++|.++ .|.|
T Consensus 454 ~~~~~~g~-~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~ 529 (562)
T PHA02562 454 ETIKSRGR-EDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTN 529 (562)
T ss_pred hHHhcCCC-CccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCe
Confidence 34444443 24467899999999999999987 599999999998 789999999999999986 3789
Q ss_pred EEEEeCChhHHhccCCeEEEEeC-CeE
Q 024989 138 IIYATHIFDGLENWPSHIVYVAH-GKL 163 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~-G~i 163 (259)
||++||+.+.. ..||++++|.+ |+.
T Consensus 530 iiiish~~~~~-~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 530 VFVISHKDHDP-QKFDRHLKMEKVGRF 555 (562)
T ss_pred EEEEECchhch-hhhhcEEEEEEECCe
Confidence 99999997655 56899999986 544
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.50 E-value=4.3e-14 Score=130.64 Aligned_cols=157 Identities=21% Similarity=0.286 Sum_probs=116.4
Q ss_pred CcEEEEEcCCCCCccccC--CceEEEEc-Ceec-cccEEEecccCCCCccCcHHHHHhcc---CCCCHHHHHHHHHHcCC
Q 024989 4 PEMVKVLGRSAFHDTALT--SSGDLSYL-GGEW-RREVAFAGFEVPIQMDVSAEKMIFGV---AGIDPQRRAELIKVLDI 76 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~--~~G~I~~~-G~~~-~~~i~~v~~~~~~~~~lt~~~~~~~~---~~~~~~~~~~~l~~~~l 76 (259)
.|++..+|.||-|||||. -.|.+.=+ |.++ .-.++|-||...--..-|++.++... ...++.-+.++++-+.+
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i 446 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI 446 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence 578899999999999994 12211111 0111 23577877765443344565544211 11234455667777666
Q ss_pred C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989 77 D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 154 (259)
Q Consensus 77 ~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr 154 (259)
+ .++-+.+||||++|||+||.+|=..+++++.|||.+-||.+.+..--..++++.-..++|-+++.||+-.+..++||
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladr 526 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADR 526 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcce
Confidence 4 46778999999999999999999999999999999999999999888888887665689999999999988899999
Q ss_pred EEEEeC
Q 024989 155 IVYVAH 160 (259)
Q Consensus 155 v~~l~~ 160 (259)
+++...
T Consensus 527 vivf~G 532 (592)
T KOG0063|consen 527 VIVFEG 532 (592)
T ss_pred eEEEec
Confidence 988753
No 421
>PRK10869 recombination and repair protein; Provisional
Probab=99.49 E-value=9.1e-14 Score=135.36 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 84 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
.|||||+||++||++++. +|+++|||||++|||+.....+.+.|+++. .+.+||+|||++..+ .+||+.+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~--~~~qvi~iTH~~~~~-~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG--ESTQVMCVTHLPQVA-GCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCHHHH-HhCCEEEEEe
Confidence 589999999999999997 589999999999999999999999999885 368999999999866 6899999998
Q ss_pred CCe
Q 024989 160 HGK 162 (259)
Q Consensus 160 ~G~ 162 (259)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 754
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.49 E-value=3.3e-13 Score=116.19 Aligned_cols=87 Identities=26% Similarity=0.350 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
+.+.+++....+.. ..||||||..++||.-|+ .+++++|||||.++||...+..+.++|.++.+ +.-+|+
T Consensus 121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii 194 (220)
T PF02463_consen 121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFII 194 (220)
T ss_dssp HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEE
T ss_pred cccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 34455555554432 399999999999997663 56789999999999999999999999998753 578999
Q ss_pred EeCChhHHhccCCeEEEE
Q 024989 141 ATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l 158 (259)
+||+-.... .||+.+.+
T Consensus 195 ~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 195 TTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp E-S-HHHHT-T-SEEEEE
T ss_pred ccccccccc-cccccccc
Confidence 999976555 47886654
No 423
>PRK03918 chromosome segregation protein; Provisional
Probab=99.48 E-value=1.1e-13 Score=141.26 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=69.6
Q ss_pred cccCCcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 79 SWRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 79 ~~~~~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
..++..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..+.. .+.|||++||+++. ..+|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~~-~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEEL-KDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH-HHhC
Confidence 3567899999999 55566688899999999999999999999999999998754 47899999999875 5689
Q ss_pred CeEEEEeC
Q 024989 153 SHIVYVAH 160 (259)
Q Consensus 153 drv~~l~~ 160 (259)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999983
No 424
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.46 E-value=1.8e-13 Score=142.03 Aligned_cols=81 Identities=23% Similarity=0.160 Sum_probs=75.1
Q ss_pred cccCCcCCHHHHHHHHHHHHHcc--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLK--------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 150 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~--------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~ 150 (259)
.+++.+|||||+++++||+||+. +|++|||||||++||+.+...+++.|..+.. .|+||+||||..+..++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHh
Confidence 46789999999999999999995 8999999999999999999999999999865 59999999999999999
Q ss_pred cCCeEEEEeC
Q 024989 151 WPSHIVYVAH 160 (259)
Q Consensus 151 ~~drv~~l~~ 160 (259)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 9999888875
No 425
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.46 E-value=3.3e-14 Score=143.21 Aligned_cols=78 Identities=22% Similarity=0.098 Sum_probs=66.0
Q ss_pred cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
...+++||+||+|++.|++++ .+|.++|||||++|+||.....+.. ++..+. +.|.++|++||+.+.....+++..+
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChHHHHHHHhcCCCe
Confidence 346789999999999999998 8999999999999999999988864 565554 4689999999999988877776655
Q ss_pred E
Q 024989 158 V 158 (259)
Q Consensus 158 l 158 (259)
+
T Consensus 463 ~ 463 (782)
T PRK00409 463 E 463 (782)
T ss_pred E
Confidence 4
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.45 E-value=3.2e-13 Score=120.47 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCCcccc---------CCceEEEEcCeeccc-----c----EEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRR-----E----VAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~-----~----i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
..++|+|||||||||| +++|+|.++|+++.. . +++++|.. +..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~------------------ 172 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGI------------------ 172 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccc------------------
Confidence 4689999999999999 479999999976420 0 11111110 000
Q ss_pred HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+..-|.+=.|.....+.+.+++|+++|+|||++ ...+..++..+ . .|.|+|++||+.+
T Consensus 173 --------------r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~~vI~ttH~~~ 230 (270)
T TIGR02858 173 --------------RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGVSIIATAHGRD 230 (270)
T ss_pred --------------cccccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCCEEEEEechhH
Confidence 000011111111123344447999999999974 33355555544 3 5999999999765
Q ss_pred H--H-----------hccCCeEEEEeCCeEEEecChhHH
Q 024989 147 G--L-----------ENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 147 ~--~-----------~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
. + ..+++|+++|++|+ ..|+++++
T Consensus 231 ~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 231 VEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 4 5 36789999999886 56666554
No 427
>PRK01156 chromosome segregation protein; Provisional
Probab=99.45 E-value=3.3e-13 Score=138.28 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=68.3
Q ss_pred cCCcCCHHHHHHHHH------HHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-C-cEEEEEeCChhHHhccC
Q 024989 81 RMHKVSDGQRRRVQI------CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-G-ATIIYATHIFDGLENWP 152 (259)
Q Consensus 81 ~~~~LSgG~~qrv~i------a~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~-g-~tiii~sH~~~~~~~~~ 152 (259)
++..|||||++|++| |++|+.+|++++|||||++||+..+..+.++|....... | .|||++||+++++ .+|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence 578999999999975 589999999999999999999999999999998654433 3 4899999999977 589
Q ss_pred CeEEEEe
Q 024989 153 SHIVYVA 159 (259)
Q Consensus 153 drv~~l~ 159 (259)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999987
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=6.5e-13 Score=114.66 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHHh--cCcEEEEEeCChhHHhccC
Q 024989 88 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA-DLLRFLRKECEE--RGATIIYATHIFDGLENWP 152 (259)
Q Consensus 88 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~-~~~~~l~~~~~~--~g~tiii~sH~~~~~~~~~ 152 (259)
-+-||++++++++.+|.++|||||++|+|+.... .+..+++.+.+. .+.++|++||+.+.+..+.
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 4679999999999999999999999999997644 446788877643 1358999999999887754
No 429
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.44 E-value=1.8e-13 Score=114.40 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=92.1
Q ss_pred EEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc--cCCCCHHHHHHHHHHcCC-C-ccccC
Q 024989 7 VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGIDPQRRAELIKVLDI-D-LSWRM 82 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~--~~~~~~~~~~~~l~~~~l-~-~~~~~ 82 (259)
+.|.||+|+|||+|..+ +.+.+-.-.+.+.|+..+ .+..++... ..+++.+ + +...+. . .+..+
T Consensus 2 ~li~G~~G~GKT~l~~~--~~~~~~~~g~~v~~~s~e------~~~~~~~~~~~~~g~~~~---~-l~~~g~l~~~d~~~ 69 (187)
T cd01124 2 TLLSGGPGTGKTTFALQ--FLYAGLARGEPGLYVTLE------ESPEELIENAESLGWDLE---R-LEDEGLLAIVDADP 69 (187)
T ss_pred EEEEcCCCCCHHHHHHH--HHHHHHHCCCcEEEEECC------CCHHHHHHHHHHcCCChH---H-HHhcCCeEEEecCc
Confidence 67999999999998521 000010011235555332 122322211 1133321 1 122222 1 35667
Q ss_pred CcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEeCChhH------
Q 024989 83 HKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLD---VLARADLLRFLRKECEERGATIIYATHIFDG------ 147 (259)
Q Consensus 83 ~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD---~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~------ 147 (259)
..+|+|++| +.....+...+|+++++|||++.+| +..+..+.+++..+.+ .|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccC
Confidence 889999998 5555556678999999999999999 8888888888887764 59999999998775
Q ss_pred ---HhccCCeEEEEe
Q 024989 148 ---LENWPSHIVYVA 159 (259)
Q Consensus 148 ---~~~~~drv~~l~ 159 (259)
+..+||.++.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 788999999887
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.44 E-value=7.2e-14 Score=140.50 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=57.8
Q ss_pred ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
..+.+||+||+++..|++++ .+|.++|||||++|+||.....+ +.++..+. +.|.++|++||+.+..
T Consensus 381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~-~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL-KQNAQVLITTHYKELK 448 (771)
T ss_pred hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHH
Confidence 34678999999999998877 78999999999999999999998 56776665 4689999999998764
No 431
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=6.3e-13 Score=140.95 Aligned_cols=73 Identities=23% Similarity=0.197 Sum_probs=65.8
Q ss_pred cCCcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChhHHhc
Q 024989 81 RMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFDGLEN 150 (259)
Q Consensus 81 ~~~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~----~~g~tiii~sH~~~~~~~ 150 (259)
..+.|||||+| |++||+||+.+|++|+|||||+|||+.+...+.+.|..+.. ..|.|||+|||+++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 45789999999 99999999999999999999999999999999998887642 247899999999999998
Q ss_pred cCC
Q 024989 151 WPS 153 (259)
Q Consensus 151 ~~d 153 (259)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 864
No 432
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.36 E-value=1.1e-12 Score=136.62 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=67.8
Q ss_pred ccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989 80 WRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 155 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv 155 (259)
.++..|||||+||++||++++ .+|+++||||||++||+..+..+.++|..+++ +.+||||||+++.+ .+||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhhH
Confidence 467899999999999999984 67899999999999999999999999998753 57899999999976 569998
Q ss_pred EEEe
Q 024989 156 VYVA 159 (259)
Q Consensus 156 ~~l~ 159 (259)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7553
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=8.6e-12 Score=122.92 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=86.4
Q ss_pred ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989 78 LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 155 (259)
Q Consensus 78 ~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv 155 (259)
+++...+|||||.||+.||.-+=..= =+++||||+.||-+.--.++++.|+++. +.|-|+|++.||-+.+. .||+|
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDedti~-~AD~i 552 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDEDTIR-AADHI 552 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHHHHh-hcCEE
Confidence 57889999999999999999997764 4899999999999999999999999986 57999999999977555 59999
Q ss_pred EEE------eCCeEEEecChhHHHHHh
Q 024989 156 VYV------AHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 156 ~~l------~~G~i~~~g~~~~~~~~~ 176 (259)
+-| +.|.|++.|++++++...
T Consensus 553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 553 IDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred EeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 987 679999999999998754
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.28 E-value=1.5e-12 Score=108.49 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=65.5
Q ss_pred ccCCcCCHHHHHHHHHHHHHccCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDE--Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
+....+|++++-+..+++..+.+|+++++|| |+.++|+. +.+.+.+.. +.|.++|+++|+ ..+..++|++..
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~ 147 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKS 147 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhc
Confidence 3456799999999999999999999999999 55566654 445555554 358999999999 466678999999
Q ss_pred EeCCeEEEe
Q 024989 158 VAHGKLQLA 166 (259)
Q Consensus 158 l~~G~i~~~ 166 (259)
+.+|++...
T Consensus 148 ~~~~~i~~~ 156 (174)
T PRK13695 148 RPGGRVYEL 156 (174)
T ss_pred cCCcEEEEE
Confidence 999998764
No 435
>PRK00064 recF recombination protein F; Reviewed
Probab=99.26 E-value=1.4e-11 Score=114.34 Aligned_cols=78 Identities=29% Similarity=0.402 Sum_probs=68.4
Q ss_pred CCcCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 82 MHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
...+|.||+|++.||++|+ .+|+++|||||+++||+..+..+++.+.++ +..++++||+.+.+..++
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhh
Confidence 4579999999999999996 799999999999999999999999988643 458999999998877764
Q ss_pred --CeEEEEeCCeE
Q 024989 153 --SHIVYVAHGKL 163 (259)
Q Consensus 153 --drv~~l~~G~i 163 (259)
++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47999999987
No 436
>PRK02224 chromosome segregation protein; Provisional
Probab=99.25 E-value=1.6e-11 Score=125.60 Aligned_cols=79 Identities=25% Similarity=0.238 Sum_probs=68.1
Q ss_pred cCCcCCHHHHH------HHHHHHHHccC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEeCChhH
Q 024989 81 RMHKVSDGQRR------RVQICMGLLKP-----F-KVLLLDEITVDLDVLARADLLRFLRKECEERGA-TIIYATHIFDG 147 (259)
Q Consensus 81 ~~~~LSgG~~q------rv~ia~al~~~-----p-~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~-tiii~sH~~~~ 147 (259)
.+..||||||+ |++++++++.+ | +++||||||++||+..+..+.++|..+.. .|. +||++||+.+.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence 46799999999 89999998863 3 67999999999999999999999998764 454 89999999998
Q ss_pred HhccCCeEEEEeCC
Q 024989 148 LENWPSHIVYVAHG 161 (259)
Q Consensus 148 ~~~~~drv~~l~~G 161 (259)
+. .||+++.|.+.
T Consensus 857 ~~-~ad~~~~~~~~ 869 (880)
T PRK02224 857 VG-AADDLVRVEKD 869 (880)
T ss_pred HH-hcCeeEEeecC
Confidence 85 69999999654
No 437
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.25 E-value=1.2e-11 Score=129.14 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=67.9
Q ss_pred cCCcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEE
Q 024989 81 RMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 156 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~ 156 (259)
++..||||||++++||++|+. +|+++|||||+++||+..+..+.++|.++.. +.++|++||+...+ .+||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-HhcceeE
Confidence 467899999999999999984 7899999999999999999999999998753 57899999998755 7899998
Q ss_pred EEeC
Q 024989 157 YVAH 160 (259)
Q Consensus 157 ~l~~ 160 (259)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7754
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.23 E-value=6.5e-11 Score=103.32 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=78.4
Q ss_pred CCCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc--CCCCHHHHHHHHHHcCCCcc
Q 024989 2 VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGIDPQRRAELIKVLDIDLS 79 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~--~~~~~~~~~~~l~~~~l~~~ 79 (259)
-+|+++.|+|++|||||||... +...+......+.|+..+ .+..+++..+ .+++. +++...=.+...
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~--~~~~~~~~g~~~~yi~~e------~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~ 90 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQR--LAYGFLQNGYSVSYVSTQ------LTTTEFIKQMMSLGYDI---NKKLISGKLLYI 90 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHH--HHHHHHhCCCcEEEEeCC------CCHHHHHHHHHHhCCch---HHHhhcCcEEEE
Confidence 3689999999999999999410 000000001234555322 1222221110 11111 111111000000
Q ss_pred ccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH----
Q 024989 80 WRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFDG---- 147 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gL----D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~---- 147 (259)
.....+|+++.++-.+.+.+. .+|+++++||||+++ |+..++.++++++.+++ .|.|+++ ||+...
T Consensus 91 ~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~ 168 (230)
T PRK08533 91 PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDES 168 (230)
T ss_pred EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eecccccccc
Confidence 111246766655555544443 369999999999999 88888889999988865 4776665 555443
Q ss_pred ----HhccCCeEEEEe
Q 024989 148 ----LENWPSHIVYVA 159 (259)
Q Consensus 148 ----~~~~~drv~~l~ 159 (259)
++.+||-|+.|+
T Consensus 169 ~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 169 VLTILRTAATMLIRLE 184 (230)
T ss_pred cceeEEEeeeEEEEEE
Confidence 244556666554
No 439
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.17 E-value=8.7e-12 Score=115.53 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=87.7
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
..++++.++|. .++-+.+||||+-||.+||.+.+.+.++.++|||.+.||...+..-...|+.+.. ...-||++.||
T Consensus 194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEHD 272 (592)
T KOG0063|consen 194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEHD 272 (592)
T ss_pred HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEee
Confidence 34566666664 4677899999999999999999999999999999999999999999999999875 57889999999
Q ss_pred hhHHhccCCeEEEEeC-----CeEEEecChhH
Q 024989 145 FDGLENWPSHIVYVAH-----GKLQLAMPMDK 171 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~-----G~i~~~g~~~~ 171 (259)
++.+..+.|-+-++.. |-+....+..+
T Consensus 273 LsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~ 304 (592)
T KOG0063|consen 273 LSVLDYLSDFICCLYGVPSAYGVVTMPFSVRE 304 (592)
T ss_pred chHHHhhhcceeEEecCCccceEEEeccchhh
Confidence 9999999999888864 55555444443
No 440
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.17 E-value=3.3e-11 Score=103.40 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=44.1
Q ss_pred CcCCHH--HHHHHHHHHHHccCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q 024989 83 HKVSDG--QRRRVQICMGLLKPFKVLLLDEIT-----VDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 83 ~~LSgG--~~qrv~ia~al~~~p~lllLDEPt-----~gLD~~~~~~~~~~l~~~~ 131 (259)
...||+ +++++.||++++.+|+++++|||| ++|||..++.+.+.+++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 334444 899999999999999999999999 9999999999999999875
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.12 E-value=2.6e-10 Score=99.39 Aligned_cols=148 Identities=12% Similarity=0.143 Sum_probs=85.3
Q ss_pred CCCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc--cCCCCHHHH--HHHHHHcCCC
Q 024989 2 VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGIDPQRR--AELIKVLDID 77 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~--~~~~~~~~~--~~~l~~~~l~ 77 (259)
.+|.++.|.|++|+|||||... +.+.+..-...+.|+..+.. ..+++.. ..+++.... ...+..+...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~--~~~~~~~~g~~~~y~~~e~~------~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~ 94 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQ--FVYGALKQGKKVYVITTENT------SKSYLKQMESVKIDISDFFLWGYLRIFPLN 94 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHH--HHHHHHhCCCEEEEEEcCCC------HHHHHHHHHHCCCChhHHHhCCCceEEecc
Confidence 4789999999999999999521 00011011134556543211 1222111 112221110 0011111111
Q ss_pred ccccCCcCCHHHHHHHHHHHHHcc--CCcEEEEeCCCCC---CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-----
Q 024989 78 LSWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEITVD---LDVLARADLLRFLRKECEERGATIIYATHIFDG----- 147 (259)
Q Consensus 78 ~~~~~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~g---LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~----- 147 (259)
.......|.++.+.+..+..++. +|+++++||||+. .|......+++.++.+++ .|.|+++++|....
T Consensus 95 -~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~ 172 (234)
T PRK06067 95 -TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELL 172 (234)
T ss_pred -ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHH
Confidence 11234567889999999999987 8999999999954 555555566666766554 58999999998765
Q ss_pred --HhccCCeEEEEe
Q 024989 148 --LENWPSHIVYVA 159 (259)
Q Consensus 148 --~~~~~drv~~l~ 159 (259)
+..++|-++.|+
T Consensus 173 ~~~~~l~DgvI~L~ 186 (234)
T PRK06067 173 SRIRSICDVYLKLR 186 (234)
T ss_pred HHHHhheEEEEEEE
Confidence 344555555554
No 442
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.08 E-value=5.8e-10 Score=98.48 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=62.0
Q ss_pred CcCCHHH--------HHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989 83 HKVSDGQ--------RRRVQICMGLLKPFKVLLLDEITVDLDVLARAD-LLRFLRKECEERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 83 ~~LSgG~--------~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~-~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d 153 (259)
..+|||+ +||+++|+++..++.|.+| ||+.+|+.+... +. +.++. ..+.|.|+.||.+..... .|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~la~~~~-~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRLAERRI-FP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHHhhCCC-CC
Confidence 3479999 9999999999999999999 999999644432 33 44443 257899999999998775 79
Q ss_pred eEEEEeCCeEE
Q 024989 154 HIVYVAHGKLQ 164 (259)
Q Consensus 154 rv~~l~~G~i~ 164 (259)
.|.+|+.|++.
T Consensus 202 aI~vl~s~sr~ 212 (249)
T cd01128 202 AIDILKSGTRK 212 (249)
T ss_pred eEEEcCCCCcc
Confidence 99999999983
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=1.7e-09 Score=94.05 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=42.7
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 92 RVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 92 rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
++.-+..-+.+|.++|||||.+|.|+.....+ +.+++.+.+..+.++|++||+.+...
T Consensus 100 ~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 100 ETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 33333334568999999999999887766664 56676665434889999999998754
No 444
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=4e-10 Score=104.77 Aligned_cols=62 Identities=27% Similarity=0.448 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHHcc---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 84 KVSDGQRRRVQICMGLLK---------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al~~---------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
.+|.||||++.||.+|+. +|++||||||+++||+..+..+++.|.+. |.+|+++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999999998642 679999999987765
No 445
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.04 E-value=3.7e-10 Score=97.88 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 89 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 89 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~-l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
+-+++.-....+.+|.++|||||++|+++.....+... ++.+.+..+.++|++||+++.+..++
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 34444444444678999999999999999998888777 55555433899999999999988876
No 446
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.02 E-value=2.2e-09 Score=101.77 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-hcCc-----EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989 112 TVDLDVLARADLLRFLRKECE-ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 171 (259)
Q Consensus 112 t~gLD~~~~~~~~~~l~~~~~-~~g~-----tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 171 (259)
|+|+||.....+.+++.++.. +.|. ||++++||+++ .+||++..|.+|+++.+++.++
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 789999999999999998753 3575 99999999994 8999999999999999987754
No 447
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.96 E-value=2.6e-09 Score=110.01 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=67.7
Q ss_pred ccCCcCCHHHHHHHHHHHHHc------cC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhcc
Q 024989 80 WRMHKVSDGQRRRVQICMGLL------KP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW 151 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~------~~--p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~ 151 (259)
+++.+||||++-.++||.+|+ .+ -++|+|||||..||+..+..+.+.|.++.. .|.+|+||||+-++.+ .
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~eel~e-~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS-DGRQIIIISHVEELKE-R 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHH-h
Confidence 578899999999888877764 55 799999999999999999999999999875 4899999999977665 5
Q ss_pred CCeEEEEeC
Q 024989 152 PSHIVYVAH 160 (259)
Q Consensus 152 ~drv~~l~~ 160 (259)
+|+++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 788777764
No 448
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.92 E-value=1.5e-09 Score=95.02 Aligned_cols=126 Identities=19% Similarity=0.319 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCCCccccC-------CceEEEEcC--eec--cccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989 4 PEMVKVLGRSAFHDTALT-------SSGDLSYLG--GEW--RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 72 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~-------~~G~I~~~G--~~~--~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~ 72 (259)
|.+..|+||.|+|||+|. .+|. .+.| ... ..++-|+.-+.+ ..++ .+++..+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~-~~~g~~~~~~~~~~Vlyi~~Ed~------~~~i--------~~Rl~~i~~ 65 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGK-NLFGGGLKVTEPGRVVYLSAEDP------REEI--------HRRLEAILQ 65 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCc-cccCCccccCCCceEEEEECCCC------HHHH--------HHHHHHHHh
Confidence 678899999999999993 3453 2333 111 223445432211 1110 123344444
Q ss_pred HcCCC-ccccCCcCCHHHHHHHHHHH----------------HHccCCcEEEEeCCCC------CCCHHHHHHHHHHHHH
Q 024989 73 VLDID-LSWRMHKVSDGQRRRVQICM----------------GLLKPFKVLLLDEITV------DLDVLARADLLRFLRK 129 (259)
Q Consensus 73 ~~~l~-~~~~~~~LSgG~~qrv~ia~----------------al~~~p~lllLDEPt~------gLD~~~~~~~~~~l~~ 129 (259)
.+++. ...+.. ..+|+.|++.+++ +...+|+++|+| |++ .+|+.....+++.|.+
T Consensus 66 ~~~~~~~~~rl~-~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~ 143 (239)
T cd01125 66 HLEPDDAGDRLF-IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRR 143 (239)
T ss_pred hcCCcCcccceE-EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHH
Confidence 44332 111111 1245555554443 346899999999 775 4799999999999999
Q ss_pred HHHhcCcEEEEEeCChh
Q 024989 130 ECEERGATIIYATHIFD 146 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~ 146 (259)
++++.|.|||+++|...
T Consensus 144 ~a~~~g~avl~v~H~~K 160 (239)
T cd01125 144 IAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHhCCEEEEEeccCc
Confidence 88777999999999864
No 449
>PRK14079 recF recombination protein F; Provisional
Probab=98.89 E-value=3.7e-09 Score=97.77 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989 84 KVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 154 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr 154 (259)
-+|+|||+++.+|..|+ .+|+++|||||+++||+..+..+++.|... .. ++++|-+ ...+|++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q-~~it~t~---~~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQ-AIVAGTE---APPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----Cc-EEEEcCC---CCCCCce
Confidence 47999999999999999 899999999999999999999999888642 12 3444332 5668999
Q ss_pred EEEEeCCeEEEecC
Q 024989 155 IVYVAHGKLQLAMP 168 (259)
Q Consensus 155 v~~l~~G~i~~~g~ 168 (259)
++.|.+|++.-..+
T Consensus 335 ~~~~~~~~~~~~~~ 348 (349)
T PRK14079 335 TLRIEAGVFTPEAP 348 (349)
T ss_pred EEEEeccEecCCCC
Confidence 99999998865443
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=85.76 Aligned_cols=82 Identities=24% Similarity=0.242 Sum_probs=64.9
Q ss_pred ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
+.....|-|+-=---+.+.+ ++.-++|||||-++|-|.-+-.++..|+++++ .|.-|||+||-.=.+.----+|+-++
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChhheeCCCcEEEEEe
Confidence 34578899997655555554 56789999999999999999999999999976 58999999998765544445677787
Q ss_pred CCeE
Q 024989 160 HGKL 163 (259)
Q Consensus 160 ~G~i 163 (259)
.+.+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 7764
No 451
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.86 E-value=4.1e-09 Score=112.22 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=54.2
Q ss_pred cCCcCCHHHHHHHH----HHHH--------HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 81 RMHKVSDGQRRRVQ----ICMG--------LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 81 ~~~~LSgG~~qrv~----ia~a--------l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+++.|||||||++. +|++ +..+|+++||||||+|||+.++..+++++.++ |.++||+||.+-
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccchh
Confidence 46899999999996 5645 55899999999999999999999999999765 688999999863
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.86 E-value=5.7e-09 Score=83.98 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHHHccCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~----------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
..+.+..++...+.+...+|+++++|||++ +.|......+.+++.. .++.+.|+|+++|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence 445566678888999999999999999994 4555555666666544 455699999999987544
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.80 E-value=1.8e-10 Score=110.78 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=55.4
Q ss_pred cccCCcCCHHHHHHHHHH--HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------H
Q 024989 79 SWRMHKVSDGQRRRVQIC--MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG--------L 148 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia--~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~--------~ 148 (259)
++....+|+|++|||.|+ .+|...|+.. +..++.++++++.+. +.|+|+|++||+++. +
T Consensus 110 ~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~ 178 (484)
T TIGR02655 110 ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGV 178 (484)
T ss_pred HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCc
Confidence 445678999999999999 6666655544 567788899888775 469999999999864 2
Q ss_pred -hccCCeEEEEe
Q 024989 149 -ENWPSHIVYVA 159 (259)
Q Consensus 149 -~~~~drv~~l~ 159 (259)
+.+||.|+.|+
T Consensus 179 ~e~laDgVI~L~ 190 (484)
T TIGR02655 179 EEFVSDNVVILR 190 (484)
T ss_pred eeEeeeeEEEEE
Confidence 67899999886
No 454
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.79 E-value=2.3e-08 Score=84.77 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=54.2
Q ss_pred CCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 82 MHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
...+|.|++|.+.|+.++...+ .++++|||-++|.|..++.+.++|.+... .+.-||++||....+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 4567999999999998888776 89999999999999999999999987654 578999999997654
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.76 E-value=1.7e-08 Score=95.38 Aligned_cols=140 Identities=9% Similarity=0.005 Sum_probs=88.3
Q ss_pred CCCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCc-
Q 024989 2 VEPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL- 78 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~- 78 (259)
-+|+.++|+|+||+|||||.. .|.. +.-...++++++.. ..+.+++ ...+..-++..
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~----~~~~gvI~~iGerg-----~ev~e~~-----------~~~l~~~gl~~t 213 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA----KADINVISLVGERG-----REVKDFI-----------RKELGEEGMRKS 213 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----CCCeEEEEeCCCCc-----ccHHHHH-----------HHHhhhccccee
Confidence 479999999999999999842 1110 00001122222211 1222221 11122222211
Q ss_pred --cccCCcCCHHHHHHHHHHHHHc-------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 79 --SWRMHKVSDGQRRRVQICMGLL-------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 79 --~~~~~~LSgG~~qrv~ia~al~-------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
-....+.|.|+|+|+..+.+.+ .++-++++|+||++.|+. +++...+.+.-. .|.+..+.||...
T Consensus 214 vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~--- 287 (432)
T PRK06793 214 VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKK--- 287 (432)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchh---
Confidence 1235788999999999999988 889999999999999995 566666666543 4888888898544
Q ss_pred ccCCeEEEEeCCeEEEecC
Q 024989 150 NWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 150 ~~~drv~~l~~G~i~~~g~ 168 (259)
+++|.....+|.|.+.++
T Consensus 288 -L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 288 -LLERSGKTQKGSITGIYT 305 (432)
T ss_pred -HHHHhccCCCcceEEEEE
Confidence 444545567898877554
No 456
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.63 E-value=7.4e-09 Score=87.29 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=68.7
Q ss_pred HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
..++.+.||-..-. ..|+-+|..||.++..+|+.+..+| +.+||..++.+.+.+.+.. +.|.+||+.+|.+.
T Consensus 45 ~~~i~~~fg~~i~~-----~~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~ 116 (188)
T TIGR00152 45 YEKIVDHFGAQILN-----EDGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLF 116 (188)
T ss_pred HHHHHHHHCHHHhC-----CCCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhh
Confidence 44566777632100 1288999999999999999988877 8999999999999998764 34679999999996
Q ss_pred H--HhccCCeEEEEeCC
Q 024989 147 G--LENWPSHIVYVAHG 161 (259)
Q Consensus 147 ~--~~~~~drv~~l~~G 161 (259)
+ +..+||.++++..+
T Consensus 117 e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 117 ENKLRSLCDRVIVVDVS 133 (188)
T ss_pred hCCcHHhCCEEEEEECC
Confidence 5 77889999887654
No 457
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.59 E-value=2.7e-08 Score=101.68 Aligned_cols=125 Identities=16% Similarity=0.130 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCCCccccCC-ceEEEEcCeeccccEE-EecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcccc
Q 024989 4 PEMVKVLGRSAFHDTALTS-SGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR 81 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~~-~G~I~~~G~~~~~~i~-~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 81 (259)
+.++.|.|||.+||||+.. -|-+.+. .++| |||-... .+.. ++.+.-++|- .+..
T Consensus 607 ~~~~iiTGpN~~GKSt~lr~v~l~~il-----Aq~G~~VPa~~a---~i~~--------------~d~I~triga-~d~i 663 (854)
T PRK05399 607 RRLLLITGPNMAGKSTYMRQVALIVLL-----AQIGSFVPAESA---RIGI--------------VDRIFTRIGA-SDDL 663 (854)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHHH-----HhcCCceeccce---Eecc--------------cCeeeeccCc-cccc
Confidence 5689999999999999752 1111111 1122 3332210 1110 1122222221 2334
Q ss_pred CCcCCHHHHHHHHHHHHHcc--CCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989 82 MHKVSDGQRRRVQICMGLLK--PFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 154 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~~--~p~lllLDEP---t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr 154 (259)
...+|.=|.....++.+|-. ++.++||||| |+.+|..+ ..+.++..+.+..|.++|++||+ .++..++++
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence 56788888888888888766 8999999999 99999544 45667766655446899999999 555566664
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.57 E-value=2.3e-07 Score=79.08 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=42.6
Q ss_pred HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 94 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 94 ~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
+++++|..+|+++++|||. |+... ...+ +.+. .|..++.++|..+... .++|++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~---~~~l-~~a~-~G~~v~~t~Ha~~~~~-~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETI---RLAL-TAAE-TGHLVMSTLHTNSAAK-TIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHH---HHHH-HHHH-cCCEEEEEecCCcHHH-HHhHHHhhc
Confidence 5889999999999999996 66543 3333 3333 5899999999988664 578987663
No 459
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.54 E-value=1.6e-07 Score=85.39 Aligned_cols=72 Identities=11% Similarity=-0.057 Sum_probs=56.1
Q ss_pred HHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 93 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 93 v~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
-.++.+|-.+|+++++|||.+ .+.+++++... ..+.+++.++|..+ +....+|+..|..|++...|.+.+.
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHH
Confidence 356778889999999999996 34567777654 32346799999988 5556899999999999888887766
Q ss_pred H
Q 024989 173 K 173 (259)
Q Consensus 173 ~ 173 (259)
.
T Consensus 280 ~ 280 (308)
T TIGR02788 280 I 280 (308)
T ss_pred H
Confidence 4
No 460
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.49 E-value=3e-07 Score=68.75 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=38.1
Q ss_pred ccCCcCCHHHHH-HHHHHHH------Hcc------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 80 WRMHKVSDGQRR-RVQICMG------LLK------PFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 80 ~~~~~LSgG~~q-rv~ia~a------l~~------~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
+..+++||||+| .+.+|.+ +.. .|++++|||||++||+..+..+++++++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 467899999994 3333333 233 3799999999999999999999998863
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.47 E-value=1.4e-06 Score=67.17 Aligned_cols=64 Identities=31% Similarity=0.255 Sum_probs=48.7
Q ss_pred cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHHhcCcEEEEEeCC
Q 024989 81 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-----FLRKECEERGATIIYATHI 144 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~-----~l~~~~~~~g~tiii~sH~ 144 (259)
.....++++..+..++++-..+|.++++||+..-.+......... .........+..+|.++|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 345777888888888888888899999999999999988876553 1122233457888999984
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.43 E-value=1.4e-07 Score=72.73 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCCccccCC---ceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALTS---SGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI 56 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~---~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~ 56 (259)
+||+++|+||||||||||.. +|.+.+.|.+. .+.+++++|+ ..+.++.+++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~~Ni 75 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELIKRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLRLNI 75 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhhCCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHHhhc
Confidence 57999999999999999954 59999999864 1235566555 2334455544
No 463
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.40 E-value=1e-06 Score=76.24 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEe
Q 024989 102 PFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA 159 (259)
Q Consensus 102 ~p~lllLDEPt~gL--D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~ 159 (259)
+|+++++|-|+.-+ +|...+.+...+....++.|.|+|+++|... .++.+||-|+.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57788888776532 4444444444455555667999999999653 3566788888876
No 464
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.33 E-value=1.3e-06 Score=89.08 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=60.8
Q ss_pred ccCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh---------ccCCeEEEEeCCeEEEecCh
Q 024989 100 LKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLE---------NWPSHIVYVAHGKLQLAMPM 169 (259)
Q Consensus 100 ~~~p~lllLDEPt~gL-D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~---------~~~drv~~l~~G~i~~~g~~ 169 (259)
..+|+++++|||+.+| |+..+..+.++++...+ .|.+++++||+++.+. +.|+++++|.+|++...+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 79999999999998765 6899999999999886 57999999999998766544
No 465
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=1.5e-06 Score=91.77 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCCCccccC----------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT----------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 72 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~----------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~ 72 (259)
++.+++|+|++|+|||||+ ..|.+.+++..+........+......... .. ...+...++++
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~-----~~---l~~~~l~~il~ 277 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMK-----LH---LQRAFLSEILD 277 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchh-----HH---HHHHHHHHHhC
Confidence 4679999999999999994 356666654221111000000000000000 00 00111223333
Q ss_pred HcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--hcCcEEEEEeCChhHHhc
Q 024989 73 VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE--ERGATIIYATHIFDGLEN 150 (259)
Q Consensus 73 ~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~--~~g~tiii~sH~~~~~~~ 150 (259)
..++ ++..+ ++.++| |..++-+|+||+- |.. ..++.+..... ..|.+||++||+...+..
T Consensus 278 ~~~~----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 278 KKDI----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred CCCc----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 3322 22222 556665 4466778899983 322 23444443221 248899999999998865
Q ss_pred c-CCeEEEEe
Q 024989 151 W-PSHIVYVA 159 (259)
Q Consensus 151 ~-~drv~~l~ 159 (259)
. +|+++.+.
T Consensus 340 ~~~~~~~~v~ 349 (1153)
T PLN03210 340 HGIDHIYEVC 349 (1153)
T ss_pred cCCCeEEEec
Confidence 4 67777653
No 466
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.27 E-value=2.7e-06 Score=81.42 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=47.0
Q ss_pred cCCcEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HhccCCeEEEEeCCe
Q 024989 101 KPFKVLLLDEITVDL---------DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAHGK 162 (259)
Q Consensus 101 ~~p~lllLDEPt~gL---------D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~--------~~~~~drv~~l~~G~ 162 (259)
.+|+++++|.-++=. ++...+++...|.+++++.|.|+|+++|...+ ++.++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 589999999765421 12345556667778888889999999997654 788999999998654
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.26 E-value=3.6e-07 Score=77.45 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=58.1
Q ss_pred EEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcH---HHHH---hccC-CCCHHHHHHHHHHcCC
Q 024989 6 MVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSA---EKMI---FGVA-GIDPQRRAELIKVLDI 76 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~---~~~~---~~~~-~~~~~~~~~~l~~~~l 76 (259)
+++|.||||||||||.. .+.+ . ...+.+++.+.. +..+.. .... +... ..+.+...+.+..+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~----~~~~~v~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 73 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--G----NPKVVIISQDSY-YKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKN 73 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--C----CCCeEEEEeccc-ccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHC
Confidence 47999999999999941 1110 0 012333333321 111111 1111 1111 1233444455555544
Q ss_pred C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989 77 D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 117 (259)
Q Consensus 77 ~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~ 117 (259)
. ...+..++|.|++++..+ .+.+|+++|+|.|+.+.++
T Consensus 74 ~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 74 GKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 2 355678899999876655 5788999999999999987
No 468
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.26 E-value=3.5e-06 Score=72.75 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=43.4
Q ss_pred cCCcEEEEeCC-----CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC---------hhHHhccCCeEEEEe
Q 024989 101 KPFKVLLLDEI-----TVDLDVLARADLLRFLRKECEERGATIIYATHI---------FDGLENWPSHIVYVA 159 (259)
Q Consensus 101 ~~p~lllLDEP-----t~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~---------~~~~~~~~drv~~l~ 159 (259)
.+++++++|=. +.+.|...+..+.++++.+. +.|.|+++++|. +..++.+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 36899999932 23445556777888888775 469999999995 244788999999984
No 469
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.25 E-value=4.7e-06 Score=73.85 Aligned_cols=139 Identities=11% Similarity=0.087 Sum_probs=71.2
Q ss_pred CCCcEEEEEcCCCCCccccCCceEEEEcCe-eccccEEEecccCCCCccCcH--HHHHhcc--------CCCCHHHHHHH
Q 024989 2 VEPEMVKVLGRSAFHDTALTSSGDLSYLGG-EWRREVAFAGFEVPIQMDVSA--EKMIFGV--------AGIDPQRRAEL 70 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~G~I~~~G~-~~~~~i~~v~~~~~~~~~lt~--~~~~~~~--------~~~~~~~~~~~ 70 (259)
.+|+++.|.|++|+|||||... +....- .....+.|+..+.+.. .+.. ...+.+. ...+.+++..+
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~--~~~~~~~~~g~~vl~iS~E~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLRE--YALDLITQHGVRVGTISLEEPVV-RTARRLLGQYAGKRLHLPDTVFIYTLEEFDAA 104 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHH--HHHHHHHhcCceEEEEEcccCHH-HHHHHHHHHHhCCCcccCCccccccHHHHHHH
Confidence 4789999999999999998421 000000 0012355554322110 0000 0011111 11223344444
Q ss_pred HHHcC-CC---ccccCCcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCH-------H-HHHHHHHHHHHHHHhcCc
Q 024989 71 IKVLD-ID---LSWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDV-------L-ARADLLRFLRKECEERGA 136 (259)
Q Consensus 71 l~~~~-l~---~~~~~~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~-------~-~~~~~~~~l~~~~~~~g~ 136 (259)
++.+. .. .......++ ...-+..++.++ .+|+++++|.++.-.+. . ....+...|+.++++.|+
T Consensus 105 ~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~v 182 (271)
T cd01122 105 FDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGI 182 (271)
T ss_pred HHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence 44442 11 111112222 233444454443 47999999987664332 1 234566778888888899
Q ss_pred EEEEEeCCh
Q 024989 137 TIIYATHIF 145 (259)
Q Consensus 137 tiii~sH~~ 145 (259)
||++++|--
T Consensus 183 tvll~sq~~ 191 (271)
T cd01122 183 HITLVSHLR 191 (271)
T ss_pred EEEEEeccc
Confidence 999999853
No 470
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.15 E-value=2.7e-05 Score=72.73 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=45.5
Q ss_pred ccCCcEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEeCC
Q 024989 100 LKPFKVLLLDEITV----DLD-----VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVAHG 161 (259)
Q Consensus 100 ~~~p~lllLDEPt~----gLD-----~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~~G 161 (259)
-.+|+++++|+-.+ .+| ....+.+...|.+++++.|.|+|++.|--. .++.++|.|+.++..
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 35899999999632 332 334455666677888888999999999543 368889999988754
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.03 E-value=3.3e-05 Score=71.31 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=40.3
Q ss_pred HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989 94 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 94 ~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
+++++|-.+|+++++||+. |+.+....++ .+ ..|.+++.+.|-.+-.. ..+|+.-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~~~~~-~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTNSAAQ-TIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCCCHHH-HHHHHHHh
Confidence 4678899999999999997 8876654333 23 35999999999865543 45666543
No 472
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.96 E-value=8.3e-05 Score=71.11 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=44.3
Q ss_pred cCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEe
Q 024989 101 KPFKVLLLDEITVDLD---------VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA 159 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD---------~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~ 159 (259)
.+|+++++|+.++-.. +...+.+...|.+++++.|.|+|+++|--. .++.++|.++.++
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le 230 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE 230 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence 5899999999875332 233445566677788888999999999532 3788899999887
No 473
>PF13175 AAA_15: AAA ATPase domain
Probab=97.95 E-value=2.2e-05 Score=73.03 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=56.1
Q ss_pred cCCcCCHHHHHHHHHHHHHc------cC-Cc---EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 81 RMHKVSDGQRRRVQICMGLL------KP-FK---VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al~------~~-p~---lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
++.++|.|.|+.+.|+..+. .+ +. ++++|||-+.|.|..++.+++.|.+++...+..||++||....
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 45679999999888877653 12 22 9999999999999999999999999987568999999998754
No 474
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.92 E-value=0.00029 Score=61.74 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=35.9
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCChhHHh
Q 024989 100 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATHIFDGLE 149 (259)
Q Consensus 100 ~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~-~g~tiii~sH~~~~~~ 149 (259)
+.+..++|+||+..|=++.....+...+.+...+ .+..+|++||+.+...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 4567799999999999999888766555454444 4888999999987543
No 475
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.92 E-value=2.4e-05 Score=75.83 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=44.3
Q ss_pred cCCcEEEEeC---CCCCCCHHH--HHHHHHHHHHHHHhcCcEEEEEeCChh---------HHhccCCeEEEEe
Q 024989 101 KPFKVLLLDE---ITVDLDVLA--RADLLRFLRKECEERGATIIYATHIFD---------GLENWPSHIVYVA 159 (259)
Q Consensus 101 ~~p~lllLDE---Pt~gLD~~~--~~~~~~~l~~~~~~~g~tiii~sH~~~---------~~~~~~drv~~l~ 159 (259)
.+|+.+++|= |++++|... +..+.++++.+. +.|.|+|+++|... ..+.+||.|+.|+
T Consensus 129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk-~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~ 200 (509)
T PRK09302 129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLK-QKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR 200 (509)
T ss_pred hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHH-hCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence 5899999994 445677665 667777777664 57999999999864 2356899999987
No 476
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.87 E-value=8e-06 Score=77.92 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCCccccC-------Cce-EEEEcCeec
Q 024989 3 EPEMVKVLGRSAFHDTALT-------SSG-DLSYLGGEW 33 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-------~~G-~I~~~G~~~ 33 (259)
+||+++|+||||||||||+ ++| +|.++|.+.
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred CCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEEC
Confidence 7999999999999999993 566 799999764
No 477
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.82 E-value=2.8e-05 Score=79.91 Aligned_cols=70 Identities=24% Similarity=0.206 Sum_probs=57.0
Q ss_pred HHHHHccCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc--cCCeEEEEeCCeEEE
Q 024989 95 ICMGLLKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLEN--WPSHIVYVAHGKLQL 165 (259)
Q Consensus 95 ia~al~~~p~lllLDEPt~gL-D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~--~~drv~~l~~G~i~~ 165 (259)
|++++..+|+++++|||+.+| |+..+..+.++++.+.+ .|.+++++||+++.+.. +++.++-....+|..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhCchHHHHHHcCCcceec
Confidence 677888999999999999999 79999999999998765 68899999999999876 344444444455553
No 478
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.80 E-value=0.00016 Score=68.88 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHHhcCc-------EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHH
Q 024989 108 LDEI--TVDLDVLARADLLRFLRKECEERGA-------TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 108 LDEP--t~gLD~~~~~~~~~~l~~~~~~~g~-------tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 172 (259)
+.|| +.|+||.....+.+++.+.. ..+. ||++.+||+ .+.+||++..+.+|.|+.+...++.
T Consensus 276 ~ge~P~~~Gypp~~~~~l~~l~ERag-~~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 276 AGEPPATKGYTPSVFSTLPRLLERAG-ASGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred cCCCCcccccChhHHHHHHHHHHHhc-cCCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEecchhhC
Confidence 4554 56999999999999998865 3467 899999998 4678999999999999998877654
No 479
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.77 E-value=0.00012 Score=66.27 Aligned_cols=78 Identities=28% Similarity=0.338 Sum_probs=66.7
Q ss_pred CcCCHHHHHHHHHHHHHcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989 83 HKVSDGQRRRVQICMGLLK--PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
..||-|+.+-+++|.+|+. .|.+++||||-++|-|..-..+..++++.++ .+ -||++||-...+..+--+-++.-+
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak-~s-Qv~VsTHS~rLl~~~e~~~v~~~~ 346 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAK-RS-QVIVSTHSPRLLNAVEEHSVFWLD 346 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhc-cc-eEEEEeCCHHHHhhccccceEEec
Confidence 4899999999999999986 4899999999999999999999999998764 34 799999999998887766555444
Q ss_pred Ce
Q 024989 161 GK 162 (259)
Q Consensus 161 G~ 162 (259)
+.
T Consensus 347 ~~ 348 (373)
T COG4637 347 RE 348 (373)
T ss_pred cc
Confidence 43
No 480
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.76 E-value=4.4e-05 Score=76.22 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=46.8
Q ss_pred cCCcCCHHHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHH
Q 024989 81 RMHKVSDGQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
++..|||||+|-++||..++. +.++ |+|||++.||+..+..+.. ++... +.-||+.|||-+.-
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d~e~~ 617 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTDEEVD 617 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEechHhhC
Confidence 457899999999876665542 3556 5699999999999999875 65543 34688888886543
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=7.6e-05 Score=71.78 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHH---hccCCCC----HHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI---FGVAGID----PQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~---~~~~~~~----~~~ 66 (259)
+|.+++++||||+||||+. ..|. .+++++..+.. ..++.+.+ ....+.+ ...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~---------~kV~LI~~Dt~---RigA~EQLr~~AeilGVpv~~~~~~ 322 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA---------SKVALLTTDSY---RIGGHEQLRIYGKILGVPVHAVKDA 322 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC---------CeEEEEeCCcc---chhHHHHHHHHHHHhCCCeeccCCc
Confidence 5789999999999999984 2221 25777766541 23333322 1111211 112
Q ss_pred HHHHHHHcCCCc--cccCCcCCHHHHH-HHHHHHHHccCC-----cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 67 RAELIKVLDIDL--SWRMHKVSDGQRR-RVQICMGLLKPF-----KVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 67 ~~~~l~~~~l~~--~~~~~~LSgG~~q-rv~ia~al~~~p-----~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+......++.. ...+.+...+++- .+.-..+++.++ .+|+||.++.+-+ +.+.++.+.. .+.+-
T Consensus 323 ~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~------l~~i~~~f~~-~~~~g 395 (484)
T PRK06995 323 ADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT------LNEVVQAYRG-PGLAG 395 (484)
T ss_pred hhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH------HHHHHHHhcc-CCCCE
Confidence 223334444431 2345554333322 223344444444 6899999988833 4555555443 46665
Q ss_pred EEEeC
Q 024989 139 IYATH 143 (259)
Q Consensus 139 ii~sH 143 (259)
+|.|+
T Consensus 396 ~IlTK 400 (484)
T PRK06995 396 CILTK 400 (484)
T ss_pred EEEeC
Confidence 66666
No 482
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.72 E-value=5.9e-05 Score=74.86 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=36.6
Q ss_pred HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 67 RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
..+.++..++. ....+.++||| +|+||| +..||+..+..+++.|.+
T Consensus 244 a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 244 ARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 34456667764 34567889999 999999 899999999999998864
No 483
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.69 E-value=0.00025 Score=61.63 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=32.4
Q ss_pred cCCcEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 101 KPFKVLLLDEITVDL-------DV-LARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 101 ~~p~lllLDEPt~gL-------D~-~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
.+|+++++| +...+ |. .....+.+.|++++++.|.+||+++|--
T Consensus 122 ~~~~~vvID-~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~ 173 (242)
T cd00984 122 HGLGLIVID-YLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLS 173 (242)
T ss_pred cCCCEEEEc-CchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccC
Confidence 489999999 43333 11 2344677888888888899999999854
No 484
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=3.7e-05 Score=73.36 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=51.6
Q ss_pred cCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHHhcCcEEEEEe-CChhHHhccCCeEE-EEeCCeEEEecChh
Q 024989 101 KPFKVLLLDEITVDLDVL-ARADLLRFLRKECEERGATIIYAT-HIFDGLENWPSHIV-YVAHGKLQLAMPMD 170 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~-~~~~~~~~l~~~~~~~g~tiii~s-H~~~~~~~~~drv~-~l~~G~i~~~g~~~ 170 (259)
.+|++||+|||...+|.. .+..++..+..+.. .|+.||++| |+..++..+.+|+. =+..|-++...+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence 479999999999988765 45678888887765 577777766 88888877777765 35667666655554
No 485
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=9.6e-05 Score=57.42 Aligned_cols=56 Identities=25% Similarity=0.143 Sum_probs=41.5
Q ss_pred HHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChh
Q 024989 90 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFD 146 (259)
Q Consensus 90 ~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~----~~g~tiii~sH~~~ 146 (259)
.+......+...++.++++||.-.. ++.....+.+.+..... ..+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556667777889999999998765 56666777888877542 24788899988754
No 486
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.67 E-value=5.2e-05 Score=64.57 Aligned_cols=59 Identities=15% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHHhcCcEEEEEeCChh-------------HHhccCCeEEEE
Q 024989 102 PFKVLLLDEITVDLDVL----------ARADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHIVYV 158 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~----------~~~~~~~~l~~~~~~~g~tiii~sH~~~-------------~~~~~~drv~~l 158 (259)
+|+++++|--++-.... ....+...|.+++++.|.|+|+++|-.. .+..++|-++.|
T Consensus 97 ~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~~~~~~gg~~~~~~~d~vi~l 176 (209)
T TIGR02237 97 SASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHLLEHWSKVILRL 176 (209)
T ss_pred CccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCCCCCcCCCcchhheeeeEEEEE
Confidence 69999999766432111 1122334566777788999999988432 245666766666
Q ss_pred eC
Q 024989 159 AH 160 (259)
Q Consensus 159 ~~ 160 (259)
+.
T Consensus 177 ~~ 178 (209)
T TIGR02237 177 EK 178 (209)
T ss_pred Ee
Confidence 54
No 487
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.67 E-value=3.2e-05 Score=66.88 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=31.2
Q ss_pred CCcEEEEeCCCCCC----C-H---HHH----HHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 102 PFKVLLLDEITVDL----D-V---LAR----ADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 102 ~p~lllLDEPt~gL----D-~---~~~----~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+++++++|--++-+ + . ..+ ..+...|+.++++.+.+||++.|-..
T Consensus 115 ~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~ 171 (235)
T cd01123 115 RIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA 171 (235)
T ss_pred CeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence 78999999877521 1 1 122 34566777777788999999987643
No 488
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.66 E-value=0.00071 Score=58.09 Aligned_cols=48 Identities=8% Similarity=0.243 Sum_probs=31.9
Q ss_pred cCCcEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 101 KPFKVLLLDEITVDLD--------VLA----RADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD--------~~~----~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
.+++++++|--++-.- ... ...+...|+.++++.+.+||++.|-....
T Consensus 113 ~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~ 172 (226)
T cd01393 113 GRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKV 172 (226)
T ss_pred CCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeec
Confidence 4889999996544211 111 23355667778788899999999865443
No 489
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.65 E-value=4.4e-05 Score=78.21 Aligned_cols=65 Identities=20% Similarity=0.099 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHHH--ccCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHH
Q 024989 84 KVSDGQRRRVQICMGL--LKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al--~~~p~lllLDEPt~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
.+|.=|-....++..| +.++.++|+||+-.|-|+..-..+.. ++..+.+..|..++++||+.+..
T Consensus 651 g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~ 718 (840)
T TIGR01070 651 GRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT 718 (840)
T ss_pred CcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence 3344334444444444 46889999999966666555555333 33333332578899999997643
No 490
>PRK04328 hypothetical protein; Provisional
Probab=97.64 E-value=0.00021 Score=63.12 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHhccCCeEEEEe
Q 024989 102 PFKVLLLDEITV--DLDVLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA 159 (259)
Q Consensus 102 ~p~lllLDEPt~--gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------~~~~~~drv~~l~ 159 (259)
+|+++++|=-|+ --|+...+.+...|....++.|+|+|+++|-.. .++.+||-|+.|+
T Consensus 128 ~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~~~~~~~~~~~~~~~~~D~vI~L~ 195 (249)
T PRK04328 128 GAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQVSVGERGFGGPGVEHAVDGIIRLD 195 (249)
T ss_pred CCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECccccccccCCCCcEEEEEEEEEEE
Confidence 799999995542 124443344444444444567999999987541 2455677777775
No 491
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.62 E-value=0.00011 Score=69.15 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=43.7
Q ss_pred HHHHccCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989 96 CMGLLKPFKVLLLDE----------ITVDLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 96 a~al~~~p~lllLDE----------Pt~gLD~~~~~~~~~~l~~~~---~~~g~tiii~sH~~~~~~~~~drv~~l~~G~ 162 (259)
..|....|.++++|| +.++.|...++.+.+++..+- ...+..||++||..+.+... +++.|+
T Consensus 232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA-----llR~GR 306 (398)
T PTZ00454 232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA-----LLRPGR 306 (398)
T ss_pred HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH-----HcCCCc
Confidence 344557899999999 456778877777778776652 12367899999988765441 345565
Q ss_pred E
Q 024989 163 L 163 (259)
Q Consensus 163 i 163 (259)
+
T Consensus 307 f 307 (398)
T PTZ00454 307 L 307 (398)
T ss_pred c
Confidence 4
No 492
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.57 E-value=4.4e-05 Score=65.90 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=41.2
Q ss_pred cCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCC--------hhHHhc-cCCeEEEEeC
Q 024989 101 KPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHI--------FDGLEN-WPSHIVYVAH 160 (259)
Q Consensus 101 ~~p~lllLDEPt~gL----D~~~~~~~~~~l~~~~~~~g~tiii~sH~--------~~~~~~-~~drv~~l~~ 160 (259)
.+|+.+++|- .+.| |+...+.++..+....++.|.|+|+++|. ...+.. +||-|+.|+.
T Consensus 114 ~~~~~vVIDs-ls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~~~~~~~~~~~~i~~~l~D~vI~L~~ 185 (226)
T PF06745_consen 114 LKPDRVVIDS-LSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEMPSGSEDDGTFGIEHYLADGVIELRY 185 (226)
T ss_dssp HTSSEEEEET-HHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEESSSSSSSSSTSHHHHHSSEEEEEEE
T ss_pred cCCCEEEEEC-HHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEccccCcccccccchhhhcccEEEEEEE
Confidence 4679999994 4444 66666655555555556789999999882 234556 8999998863
No 493
>PTZ00035 Rad51 protein; Provisional
Probab=97.56 E-value=0.00023 Score=65.70 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=31.1
Q ss_pred cCCcEEEEeCCCCCCC--------HHHHH----HHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 101 KPFKVLLLDEITVDLD--------VLARA----DLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD--------~~~~~----~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
.+++++++|=-++-.- ...++ ++...|++++++.|.|||++-|-..
T Consensus 212 ~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~ 269 (337)
T PTZ00035 212 ERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMA 269 (337)
T ss_pred cCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEE
Confidence 4689999998776322 22222 3556667777778999999987544
No 494
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.55 E-value=0.00061 Score=56.95 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=27.2
Q ss_pred cCCcEEEEeCCCCCC----CH-HHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 101 KPFKVLLLDEITVDL----DV-LARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 101 ~~p~lllLDEPt~gL----D~-~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+|+++++|=-++-. +. .....+++.|++++++.|.+|+++.|-
T Consensus 140 ~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 188 (193)
T PF13481_consen 140 YGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT 188 (193)
T ss_dssp ---SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred CCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 479999999443322 21 223578899999988889999999884
No 495
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.54 E-value=0.0001 Score=63.62 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=38.8
Q ss_pred cCCcEEEEeCCCCCC--------CHHHH----HHHHHHHHHHHHhcCcEEEEEeCChh-------------HHhccCCeE
Q 024989 101 KPFKVLLLDEITVDL--------DVLAR----ADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHI 155 (259)
Q Consensus 101 ~~p~lllLDEPt~gL--------D~~~~----~~~~~~l~~~~~~~g~tiii~sH~~~-------------~~~~~~drv 155 (259)
.+++++++|--++-. |...+ ..++..|.+++++.|.|||+++|-.. .+..+||-+
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~i 185 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKTI 185 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccEE
Confidence 799999999875322 22221 22233466677788999999988543 345567777
Q ss_pred EEEeC
Q 024989 156 VYVAH 160 (259)
Q Consensus 156 ~~l~~ 160 (259)
+.|+.
T Consensus 186 i~l~~ 190 (225)
T PRK09361 186 LRLEK 190 (225)
T ss_pred EEEEE
Confidence 76654
No 496
>PRK13764 ATPase; Provisional
Probab=97.53 E-value=0.00031 Score=69.23 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=45.4
Q ss_pred HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC---------------ChhHHhccCCeEEEEeCCeE
Q 024989 99 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH---------------IFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 99 l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH---------------~~~~~~~~~drv~~l~~G~i 163 (259)
|..+|+++++||.=..-| ++++..++. .|..++-+-| ++..+..+||+|+++++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 778999999999985332 344433332 4778899999 99999999999999999999
No 497
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.50 E-value=0.00049 Score=60.10 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=37.9
Q ss_pred cCCcEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHhccCCeEEEEe
Q 024989 101 KPFKVLLLDEITV--DLDVLARADLLRFLRKECEERGATIIYATHIF--------DGLENWPSHIVYVA 159 (259)
Q Consensus 101 ~~p~lllLDEPt~--gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~--------~~~~~~~drv~~l~ 159 (259)
.+++.+++|=-++ -.|+...+.+...+..+.++.|.|+|+++|-- ..++.+||-|+.|+
T Consensus 125 ~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~~~~~~~~~~~~~~~~~~D~vI~L~ 193 (237)
T TIGR03877 125 INAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQVSVGERGFGGPGVEHAVDGIIRLD 193 (237)
T ss_pred hCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccccccccceEEEEeEEEEEE
Confidence 3799999996554 34554444444445555567899999998732 12455677777775
No 498
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.49 E-value=0.0004 Score=59.51 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=39.7
Q ss_pred cCCcEEEEeCCCCCC----C-----HHHH---HHHHHHHHHHHHhcCcEEEEEeCChh-------------HHhccCCeE
Q 024989 101 KPFKVLLLDEITVDL----D-----VLAR---ADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHI 155 (259)
Q Consensus 101 ~~p~lllLDEPt~gL----D-----~~~~---~~~~~~l~~~~~~~g~tiii~sH~~~-------------~~~~~~drv 155 (259)
.+++++++|-.++-. + .... ..+...|+.++++.+.|||+++|-.. .+..++|.+
T Consensus 102 ~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~ 181 (218)
T cd01394 102 EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVI 181 (218)
T ss_pred cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEE
Confidence 359999999766532 1 1111 22334466777788999999999532 346677877
Q ss_pred EEEeCC
Q 024989 156 VYVAHG 161 (259)
Q Consensus 156 ~~l~~G 161 (259)
+.|+..
T Consensus 182 i~l~~~ 187 (218)
T cd01394 182 LRLEKL 187 (218)
T ss_pred EEEEEc
Confidence 877754
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.48 E-value=3.1e-05 Score=53.81 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=17.2
Q ss_pred CcEEEEEcCCCCCccccCC
Q 024989 4 PEMVKVLGRSAFHDTALTS 22 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~~ 22 (259)
|+++.|.||||||||||.|
T Consensus 23 g~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLD 41 (62)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5789999999999999965
No 500
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.00017 Score=76.58 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=62.6
Q ss_pred CCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEE
Q 024989 82 MHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 156 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~ 156 (259)
+..||||||--++||..|+ ...++++|||-=++||..+...+.++|++.. .+.=.|+|||.-..... ||+++
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~~-ad~l~ 1139 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTMEA-ADRLV 1139 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHHH-HHHHe
Confidence 5679999999999998875 5679999999999999999999999999986 47789999999776554 78755
Done!