Query 024989
Match_columns 259
No_of_seqs 382 out of 3031
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:00:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.6E-45 5.5E-50 338.9 21.6 174 3-176 53-255 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 3.1E-45 1E-49 336.5 21.8 174 3-176 29-230 (359)
3 3gfo_A Cobalt import ATP-bindi 100.0 7.4E-45 2.5E-49 323.6 20.9 173 3-175 33-234 (275)
4 3rlf_A Maltose/maltodextrin im 100.0 1E-44 3.4E-49 335.3 21.8 174 3-176 28-225 (381)
5 3tif_A Uncharacterized ABC tra 100.0 7.3E-45 2.5E-49 316.6 18.5 170 3-173 30-233 (235)
6 2olj_A Amino acid ABC transpor 100.0 2.8E-44 9.4E-49 318.0 21.8 172 3-175 49-249 (263)
7 4g1u_C Hemin import ATP-bindin 100.0 2.2E-44 7.4E-49 319.1 20.3 172 3-174 36-237 (266)
8 1b0u_A Histidine permease; ABC 100.0 5.6E-44 1.9E-48 315.7 21.1 172 3-175 31-243 (262)
9 1z47_A CYSA, putative ABC-tran 100.0 5.1E-44 1.8E-48 328.2 21.6 173 3-175 40-236 (355)
10 2onk_A Molybdate/tungstate ABC 100.0 3.1E-44 1.1E-48 313.7 18.8 171 5-175 25-217 (240)
11 2yyz_A Sugar ABC transporter, 100.0 7.3E-44 2.5E-48 327.8 21.6 173 3-175 28-224 (359)
12 1g6h_A High-affinity branched- 100.0 4.5E-44 1.6E-48 315.4 18.7 168 3-171 32-239 (257)
13 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-43 4.8E-48 312.3 20.8 171 3-174 40-235 (256)
14 2it1_A 362AA long hypothetical 100.0 1.2E-43 4E-48 326.7 21.1 173 3-175 28-224 (362)
15 2pcj_A ABC transporter, lipopr 100.0 1.5E-43 5.1E-48 306.2 20.2 164 3-168 29-222 (224)
16 1oxx_K GLCV, glucose, ABC tran 100.0 7.2E-44 2.5E-48 327.4 18.8 173 3-175 30-231 (353)
17 1ji0_A ABC transporter; ATP bi 100.0 1.6E-43 5.5E-48 308.9 19.6 171 3-174 31-228 (240)
18 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-43 3.9E-48 325.3 19.6 173 3-175 25-218 (348)
19 1v43_A Sugar-binding transport 100.0 1.6E-43 5.4E-48 326.9 20.1 173 3-175 36-232 (372)
20 1g29_1 MALK, maltose transport 100.0 2.8E-43 9.5E-48 325.5 21.4 173 3-175 28-230 (372)
21 2yz2_A Putative ABC transporte 100.0 1.1E-42 3.8E-47 308.0 21.2 172 3-175 32-228 (266)
22 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-42 4.6E-47 304.9 19.2 170 3-174 25-222 (249)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.5E-42 5E-47 309.3 16.0 171 3-174 46-252 (279)
24 2nq2_C Hypothetical ABC transp 100.0 4.4E-42 1.5E-46 302.2 18.5 166 3-174 30-217 (253)
25 2ff7_A Alpha-hemolysin translo 100.0 1.9E-41 6.6E-46 297.1 19.8 169 3-175 34-233 (247)
26 2ixe_A Antigen peptide transpo 100.0 1.5E-41 5E-46 301.7 18.3 171 3-175 44-246 (271)
27 2zu0_C Probable ATP-dependent 100.0 6.3E-41 2.2E-45 296.9 19.3 170 3-173 45-253 (267)
28 3nh6_A ATP-binding cassette SU 100.0 4.7E-41 1.6E-45 303.2 18.2 169 3-175 79-278 (306)
29 2d2e_A SUFC protein; ABC-ATPas 100.0 2.7E-41 9.1E-46 296.5 15.8 168 3-171 28-230 (250)
30 1mv5_A LMRA, multidrug resista 100.0 3.1E-41 1.1E-45 294.9 15.5 168 3-174 27-226 (243)
31 2pjz_A Hypothetical protein ST 100.0 1.6E-40 5.4E-45 293.9 18.0 165 4-174 30-215 (263)
32 2ghi_A Transport protein; mult 100.0 3.5E-40 1.2E-44 291.1 19.3 169 3-175 45-243 (260)
33 2cbz_A Multidrug resistance-as 100.0 5.3E-40 1.8E-44 286.2 15.9 163 3-174 30-217 (237)
34 2pze_A Cystic fibrosis transme 100.0 1.2E-39 4.2E-44 282.5 17.9 163 3-174 33-218 (229)
35 3gd7_A Fusion complex of cysti 100.0 3.3E-40 1.1E-44 306.5 15.1 170 3-176 46-244 (390)
36 1sgw_A Putative ABC transporte 100.0 1.5E-40 5.2E-45 285.7 11.8 159 3-163 34-210 (214)
37 2bbs_A Cystic fibrosis transme 100.0 3.6E-38 1.2E-42 282.5 16.0 162 3-174 63-247 (290)
38 4a82_A Cystic fibrosis transme 100.0 1.1E-37 3.8E-42 302.8 19.7 169 3-175 366-565 (578)
39 3b5x_A Lipid A export ATP-bind 100.0 1E-37 3.6E-42 303.2 19.2 169 3-175 368-568 (582)
40 3b60_A Lipid A export ATP-bind 100.0 1.1E-37 3.8E-42 303.0 19.3 169 3-175 368-568 (582)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.6E-37 5.6E-42 302.2 20.1 169 3-175 368-567 (587)
42 2yl4_A ATP-binding cassette SU 100.0 1.7E-37 6E-42 302.3 19.6 168 3-174 369-570 (595)
43 3qf4_B Uncharacterized ABC tra 100.0 1.1E-37 3.8E-42 303.9 17.9 169 3-175 380-579 (598)
44 1yqt_A RNAse L inhibitor; ATP- 100.0 1.8E-37 6.3E-42 299.0 13.9 167 3-174 311-493 (538)
45 3bk7_A ABC transporter ATP-bin 100.0 3.4E-37 1.1E-41 300.7 14.7 167 3-174 381-563 (607)
46 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-36 4E-41 293.3 15.4 167 3-173 293-476 (538)
47 3j16_B RLI1P; ribosome recycli 100.0 4.2E-36 1.4E-40 292.8 17.0 168 3-175 377-560 (608)
48 4f4c_A Multidrug resistance pr 100.0 1E-34 3.5E-39 304.2 17.5 169 3-175 1104-1305(1321)
49 3g5u_A MCG1178, multidrug resi 100.0 5.7E-34 2E-38 297.8 19.0 169 3-175 415-614 (1284)
50 4f4c_A Multidrug resistance pr 100.0 5.1E-34 1.7E-38 298.9 18.2 170 3-176 443-643 (1321)
51 3g5u_A MCG1178, multidrug resi 100.0 5.1E-34 1.7E-38 298.2 17.8 169 3-175 1058-1259(1284)
52 3ux8_A Excinuclease ABC, A sub 100.0 6.7E-34 2.3E-38 280.4 13.2 104 70-175 185-299 (670)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 4.2E-34 1.4E-38 275.6 11.1 156 3-161 46-234 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 5.6E-33 1.9E-37 273.9 18.0 108 66-175 522-641 (670)
55 3bk7_A ABC transporter ATP-bin 100.0 1.1E-33 3.7E-38 276.0 12.2 156 3-161 116-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 4.7E-33 1.6E-37 281.8 17.2 165 3-174 460-635 (986)
57 3ozx_A RNAse L inhibitor; ATP 100.0 4.6E-33 1.6E-37 268.2 11.3 156 3-162 24-214 (538)
58 3j16_B RLI1P; ribosome recycli 100.0 1.4E-32 4.7E-37 268.1 12.0 160 3-163 102-299 (608)
59 2iw3_A Elongation factor 3A; a 100.0 2.3E-32 7.7E-37 276.8 9.0 101 64-168 877-981 (986)
60 3pih_A Uvrabc system protein A 100.0 1.7E-30 5.8E-35 262.4 18.2 108 66-175 784-903 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 2.5E-30 8.4E-35 259.3 16.2 108 66-175 709-828 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 6.5E-30 2.2E-34 257.5 16.9 108 66-175 824-943 (972)
63 2ygr_A Uvrabc system protein A 100.0 1.3E-29 4.6E-34 255.9 15.9 107 67-175 843-961 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.7E-31 1.3E-35 250.5 -3.9 164 3-173 137-337 (460)
65 4aby_A DNA repair protein RECN 99.9 2.2E-27 7.5E-32 220.4 15.5 80 85-167 296-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.2E-26 4E-31 213.8 12.2 85 79-165 274-364 (365)
67 4gp7_A Metallophosphoesterase; 99.9 7.3E-27 2.5E-31 192.9 0.3 138 3-151 8-165 (171)
68 1e69_A Chromosome segregation 99.9 5.3E-24 1.8E-28 192.5 14.2 90 79-171 214-310 (322)
69 3b85_A Phosphate starvation-in 99.9 2.2E-26 7.4E-31 196.6 -3.6 127 3-150 21-163 (208)
70 1ye8_A Protein THEP1, hypothet 99.9 1.4E-24 4.9E-29 180.9 4.7 136 6-165 2-159 (178)
71 3pih_A Uvrabc system protein A 99.9 1.5E-22 5.2E-27 204.5 14.7 106 68-175 445-561 (916)
72 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 2.1E-22 7.4E-27 163.2 12.0 83 79-163 52-142 (148)
73 1tq4_A IIGP1, interferon-induc 99.9 2.7E-25 9.3E-30 207.6 -8.2 151 6-162 71-255 (413)
74 1znw_A Guanylate kinase, GMP k 99.9 2.9E-25 1E-29 188.2 -11.9 145 3-159 19-202 (207)
75 2r6f_A Excinuclease ABC subuni 99.8 2.3E-21 7.8E-26 195.6 11.7 103 70-174 487-600 (972)
76 2ygr_A Uvrabc system protein A 99.8 3.7E-21 1.3E-25 194.6 13.1 103 70-174 504-617 (993)
77 3b9q_A Chloroplast SRP recepto 99.8 8.4E-23 2.9E-27 183.6 0.7 147 3-163 99-284 (302)
78 2vf7_A UVRA2, excinuclease ABC 99.8 1.4E-20 4.9E-25 188.7 13.1 103 70-174 362-475 (842)
79 2og2_A Putative signal recogni 99.8 1.3E-21 4.4E-26 179.7 1.9 147 3-163 156-341 (359)
80 1tf7_A KAIC; homohexamer, hexa 99.8 1.4E-20 4.8E-25 180.6 8.3 147 2-162 279-444 (525)
81 1cr0_A DNA primase/helicase; R 99.8 1.4E-20 4.7E-25 167.4 6.4 157 2-163 33-237 (296)
82 2ehv_A Hypothetical protein PH 99.8 1.7E-20 5.9E-25 161.2 2.0 146 3-160 29-207 (251)
83 2dpy_A FLII, flagellum-specifi 99.8 8E-21 2.7E-25 178.7 -1.5 153 2-174 155-344 (438)
84 3sop_A Neuronal-specific septi 99.8 1E-21 3.6E-26 173.8 -7.3 131 6-147 4-152 (270)
85 2v9p_A Replication protein E1; 99.8 5.5E-22 1.9E-26 178.4 -9.6 133 3-172 125-264 (305)
86 2pt7_A CAG-ALFA; ATPase, prote 99.8 3.9E-20 1.4E-24 168.0 1.7 108 3-163 170-292 (330)
87 1z6g_A Guanylate kinase; struc 99.8 9.9E-23 3.4E-27 174.5 -14.8 128 2-132 21-175 (218)
88 3thx_A DNA mismatch repair pro 99.8 5.1E-20 1.7E-24 186.7 2.3 91 81-172 718-811 (934)
89 3qkt_A DNA double-strand break 99.8 1.4E-18 4.8E-23 158.0 10.5 78 80-159 244-327 (339)
90 4a74_A DNA repair and recombin 99.8 1.5E-19 5.2E-24 153.4 3.4 78 85-162 100-201 (231)
91 2w0m_A SSO2452; RECA, SSPF, un 99.8 2.9E-18 9.8E-23 145.2 10.4 80 83-162 102-193 (235)
92 4ad8_A DNA repair protein RECN 99.8 1.6E-18 5.6E-23 165.9 9.7 78 81-161 393-473 (517)
93 3kta_B Chromosome segregation 99.7 6.4E-18 2.2E-22 140.2 11.3 81 80-163 60-146 (173)
94 1tf7_A KAIC; homohexamer, hexa 99.7 2E-20 6.9E-25 179.5 -4.9 138 3-160 38-209 (525)
95 2o8b_B DNA mismatch repair pro 99.7 2.7E-19 9.1E-24 183.2 2.5 142 4-169 789-937 (1022)
96 2obl_A ESCN; ATPase, hydrolase 99.7 1.2E-19 4E-24 166.1 -0.9 149 3-173 70-254 (347)
97 3aez_A Pantothenate kinase; tr 99.7 2E-20 7E-25 168.8 -7.3 141 3-162 89-246 (312)
98 1nlf_A Regulatory protein REPA 99.7 4.7E-18 1.6E-22 150.0 7.7 140 3-149 29-185 (279)
99 2o5v_A DNA replication and rep 99.7 4.2E-18 1.4E-22 156.4 7.3 84 81-172 261-354 (359)
100 1pzn_A RAD51, DNA repair and r 99.7 6.6E-18 2.2E-22 154.5 2.5 143 3-168 130-309 (349)
101 3thx_B DNA mismatch repair pro 99.7 1.1E-17 3.7E-22 169.3 3.8 75 79-155 730-805 (918)
102 2eyu_A Twitching motility prot 99.7 1.3E-17 4.6E-22 146.7 3.3 113 3-159 24-146 (261)
103 2cvh_A DNA repair and recombin 99.7 1.6E-16 5.4E-21 133.9 9.5 142 2-161 18-185 (220)
104 3asz_A Uridine kinase; cytidin 99.7 2E-19 6.7E-24 151.7 -8.9 138 3-145 5-161 (211)
105 2jeo_A Uridine-cytidine kinase 99.7 7E-18 2.4E-22 146.3 0.1 149 3-174 24-187 (245)
106 1ewq_A DNA mismatch repair pro 99.6 3.8E-17 1.3E-21 162.9 3.9 113 4-152 576-704 (765)
107 2i3b_A HCR-ntpase, human cance 99.6 1.9E-18 6.4E-23 145.3 -6.2 142 4-166 1-168 (189)
108 3auy_A DNA double-strand break 99.6 6.7E-16 2.3E-20 141.9 10.1 78 80-160 276-360 (371)
109 1rj9_A FTSY, signal recognitio 99.6 3.9E-17 1.3E-21 146.8 0.5 132 3-146 101-259 (304)
110 1w1w_A Structural maintenance 99.6 1.3E-15 4.4E-20 142.4 10.7 76 82-159 331-410 (430)
111 1wb9_A DNA mismatch repair pro 99.6 5.7E-16 1.9E-20 155.1 5.4 83 83-167 668-751 (800)
112 3jvv_A Twitching mobility prot 99.6 1E-15 3.5E-20 140.4 4.4 59 94-161 188-246 (356)
113 2bdt_A BH3686; alpha-beta prot 99.5 2.8E-20 9.4E-25 154.6 -25.1 156 4-173 2-183 (189)
114 3szr_A Interferon-induced GTP- 99.5 1.2E-16 4.1E-21 155.9 -4.6 147 6-170 47-233 (608)
115 1s96_A Guanylate kinase, GMP k 99.5 6.4E-16 2.2E-20 132.6 -0.4 133 1-174 13-160 (219)
116 2qnr_A Septin-2, protein NEDD5 99.5 3.6E-17 1.2E-21 146.6 -8.9 131 7-146 21-168 (301)
117 1n0w_A DNA repair protein RAD5 99.5 7.6E-14 2.6E-18 119.1 11.9 61 101-161 118-209 (243)
118 1pui_A ENGB, probable GTP-bind 99.4 6.6E-15 2.3E-19 123.0 -3.2 70 67-137 129-202 (210)
119 2ewv_A Twitching motility prot 99.4 1.5E-13 5.2E-18 126.5 3.2 107 3-157 135-255 (372)
120 3lda_A DNA repair protein RAD5 99.4 2.5E-12 8.6E-17 119.5 10.4 62 101-162 272-364 (400)
121 2bbw_A Adenylate kinase 4, AK4 99.3 8.3E-15 2.9E-19 126.7 -7.7 124 3-133 26-199 (246)
122 1lw7_A Transcriptional regulat 99.3 3.8E-16 1.3E-20 143.1 -17.2 89 82-173 256-354 (365)
123 2kjq_A DNAA-related protein; s 99.3 5.8E-12 2E-16 101.4 7.8 44 99-144 80-124 (149)
124 1zp6_A Hypothetical protein AT 99.3 1.4E-13 4.9E-18 113.6 -2.7 118 3-131 8-148 (191)
125 3ec2_A DNA replication protein 99.2 6.7E-13 2.3E-17 109.0 -1.0 47 100-147 98-145 (180)
126 1nij_A Hypothetical protein YJ 99.2 1E-13 3.5E-18 124.9 -6.8 57 83-152 140-196 (318)
127 1sxj_E Activator 1 40 kDa subu 99.2 1.5E-11 5.3E-16 110.7 7.3 121 7-148 39-177 (354)
128 3e70_C DPA, signal recognition 99.2 1.6E-11 5.5E-16 111.2 6.0 144 3-164 128-307 (328)
129 2qag_C Septin-7; cell cycle, c 99.2 6.1E-13 2.1E-17 124.3 -4.1 128 7-147 34-179 (418)
130 1odf_A YGR205W, hypothetical 3 99.1 1.6E-12 5.4E-17 115.9 -2.4 114 3-118 30-168 (290)
131 2f1r_A Molybdopterin-guanine d 99.1 1.5E-13 5.1E-18 113.5 -9.5 117 5-133 3-162 (171)
132 2dr3_A UPF0273 protein PH0284; 99.1 4.8E-10 1.6E-14 95.4 12.1 60 101-160 127-196 (247)
133 2rcn_A Probable GTPase ENGC; Y 99.1 3.4E-11 1.2E-15 110.3 3.8 95 2-99 213-328 (358)
134 2gza_A Type IV secretion syste 99.1 2.6E-11 8.8E-16 111.1 2.7 114 3-162 174-303 (361)
135 2qag_B Septin-6, protein NEDD5 99.1 1.5E-10 5.3E-15 108.1 6.7 137 3-144 39-218 (427)
136 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 3.3E-14 1.1E-18 131.8 -18.8 147 3-169 19-208 (392)
137 2px0_A Flagellar biosynthesis 99.0 2.7E-10 9.3E-15 101.7 5.1 131 3-166 104-247 (296)
138 2zr9_A Protein RECA, recombina 99.0 5.6E-10 1.9E-14 101.9 7.2 139 3-167 60-236 (349)
139 1udx_A The GTP-binding protein 99.0 7.6E-12 2.6E-16 116.8 -6.3 143 3-153 156-317 (416)
140 2r6a_A DNAB helicase, replicat 99.0 8.4E-10 2.9E-14 103.8 7.4 80 82-163 293-401 (454)
141 2yhs_A FTSY, cell division pro 98.9 4E-10 1.4E-14 107.0 4.4 157 3-172 292-477 (503)
142 1p9r_A General secretion pathw 98.9 1E-11 3.6E-16 116.0 -7.0 104 3-108 166-315 (418)
143 1vma_A Cell division protein F 98.9 8.5E-10 2.9E-14 99.0 4.4 97 3-130 103-211 (306)
144 2oap_1 GSPE-2, type II secreti 98.9 2.9E-12 9.9E-17 122.6 -13.6 58 83-153 399-458 (511)
145 2qm8_A GTPase/ATPase; G protei 98.8 1.6E-10 5.5E-15 104.9 -1.8 125 3-131 54-259 (337)
146 2yv5_A YJEQ protein; hydrolase 98.8 2.2E-10 7.4E-15 102.4 -1.1 96 2-97 163-300 (302)
147 1ls1_A Signal recognition part 98.8 1E-08 3.6E-13 91.2 8.9 103 3-130 97-209 (295)
148 3c8u_A Fructokinase; YP_612366 98.8 2.7E-11 9.2E-16 102.0 -8.1 139 3-162 21-174 (208)
149 1in4_A RUVB, holliday junction 98.8 7.4E-11 2.5E-15 106.6 -6.5 127 5-154 52-211 (334)
150 1lvg_A Guanylate kinase, GMP k 98.7 1.1E-11 3.6E-16 104.1 -13.4 57 95-160 116-173 (198)
151 2x8a_A Nuclear valosin-contain 98.6 4.4E-11 1.5E-15 105.5 -14.3 116 7-127 47-190 (274)
152 2ius_A DNA translocase FTSK; n 98.5 7.7E-10 2.6E-14 105.6 -7.3 153 3-157 166-361 (512)
153 1htw_A HI0065; nucleotide-bind 98.5 1.4E-08 4.8E-13 82.4 0.6 52 2-54 31-93 (158)
154 1jjv_A Dephospho-COA kinase; P 98.4 5.7E-08 1.9E-12 80.9 0.5 122 6-159 4-131 (206)
155 2xau_A PRE-mRNA-splicing facto 98.4 3.9E-07 1.3E-11 91.1 6.3 74 81-155 187-262 (773)
156 1u0l_A Probable GTPase ENGC; p 98.3 3.2E-08 1.1E-12 88.1 -1.7 85 2-87 167-294 (301)
157 1oix_A RAS-related protein RAB 98.3 2.4E-07 8.1E-12 76.3 3.6 38 91-130 152-189 (191)
158 1sq5_A Pantothenate kinase; P- 98.3 3E-08 1E-12 88.5 -2.3 100 3-117 79-199 (308)
159 1t9h_A YLOQ, probable GTPase E 98.3 3.5E-08 1.2E-12 88.5 -2.2 91 2-92 171-303 (307)
160 2z43_A DNA repair and recombin 98.3 2.3E-06 7.8E-11 76.7 9.6 58 90-147 188-260 (324)
161 3hr8_A Protein RECA; alpha and 98.3 2.8E-06 9.7E-11 77.5 9.6 69 92-160 127-229 (356)
162 1v5w_A DMC1, meiotic recombina 98.3 3E-06 1E-10 76.7 9.7 70 91-160 204-308 (343)
163 4a1f_A DNAB helicase, replicat 98.2 1.6E-06 5.6E-11 78.6 7.1 117 2-144 44-165 (338)
164 2e87_A Hypothetical protein PH 98.2 1.7E-06 5.8E-11 78.6 5.8 64 80-146 227-293 (357)
165 2ce7_A Cell division protein F 98.1 4.3E-06 1.5E-10 79.1 7.9 63 87-149 93-168 (476)
166 1fnn_A CDC6P, cell division co 98.1 6.5E-06 2.2E-10 74.1 7.2 53 101-154 124-178 (389)
167 3bh0_A DNAB-like replicative h 98.0 6E-06 2E-10 73.8 6.4 117 2-144 66-190 (315)
168 3k1j_A LON protease, ATP-depen 98.0 8E-07 2.7E-11 86.3 0.1 47 82-129 181-227 (604)
169 2f9l_A RAB11B, member RAS onco 97.9 3.6E-06 1.2E-10 69.2 3.1 37 93-131 130-166 (199)
170 1iy2_A ATP-dependent metallopr 97.9 9.6E-09 3.3E-13 89.9 -14.4 96 7-111 76-194 (278)
171 2qtf_A Protein HFLX, GTP-bindi 97.8 2.5E-06 8.7E-11 78.0 0.5 62 68-133 282-354 (364)
172 1u94_A RECA protein, recombina 97.8 0.00015 5.2E-09 66.0 12.0 74 91-164 128-235 (356)
173 3kl4_A SRP54, signal recogniti 97.8 2.1E-05 7.2E-10 73.5 6.4 19 3-21 96-114 (433)
174 1ixz_A ATP-dependent metallopr 97.8 1.4E-08 4.7E-13 87.5 -14.6 97 7-112 52-171 (254)
175 3tr0_A Guanylate kinase, GMP k 97.8 5.6E-06 1.9E-10 68.2 1.3 52 1-52 4-68 (205)
176 2z4s_A Chromosomal replication 97.7 1E-05 3.4E-10 75.7 2.3 68 101-169 193-263 (440)
177 2qby_A CDC6 homolog 1, cell di 97.7 1.7E-05 5.9E-10 70.9 3.2 52 102-153 128-181 (386)
178 1svm_A Large T antigen; AAA+ f 97.7 3.9E-07 1.3E-11 83.9 -7.9 111 3-113 168-312 (377)
179 2i1q_A DNA repair and recombin 97.7 7.3E-05 2.5E-09 66.5 7.1 69 93-161 192-291 (322)
180 3euj_A Chromosome partition pr 97.7 6.1E-06 2.1E-10 78.2 -0.1 31 3-33 28-67 (483)
181 1qhl_A Protein (cell division 97.6 1.4E-06 4.7E-11 74.8 -5.1 29 5-33 28-65 (227)
182 3b9p_A CG5977-PA, isoform A; A 97.5 0.00058 2E-08 59.4 10.1 61 86-146 97-170 (297)
183 1ega_A Protein (GTP-binding pr 97.5 0.00013 4.3E-09 64.7 5.7 65 85-156 101-170 (301)
184 3lnc_A Guanylate kinase, GMP k 97.5 3.4E-05 1.2E-09 65.2 1.9 19 3-21 26-44 (231)
185 4eun_A Thermoresistant glucoki 97.5 2.2E-05 7.6E-10 65.0 0.6 31 3-33 28-63 (200)
186 1kgd_A CASK, peripheral plasma 97.5 2.9E-05 1E-09 63.3 1.3 20 2-21 3-22 (180)
187 3a00_A Guanylate kinase, GMP k 97.3 4.2E-05 1.4E-09 62.6 0.3 18 4-21 1-18 (186)
188 1xp8_A RECA protein, recombina 97.3 0.0015 5.3E-08 59.5 10.5 136 3-162 73-244 (366)
189 2vp4_A Deoxynucleoside kinase; 97.2 6.8E-05 2.3E-09 63.6 1.2 30 3-32 19-53 (230)
190 2q6t_A DNAB replication FORK h 97.2 0.0013 4.5E-08 61.2 10.0 118 2-144 198-319 (444)
191 1kag_A SKI, shikimate kinase I 97.2 6.2E-05 2.1E-09 60.2 0.6 21 1-21 1-21 (173)
192 2j41_A Guanylate kinase; GMP, 97.2 8.1E-05 2.8E-09 61.1 1.1 18 3-20 5-22 (207)
193 3tau_A Guanylate kinase, GMP k 97.2 0.0001 3.6E-09 61.4 1.5 20 2-21 6-25 (208)
194 2dy1_A Elongation factor G; tr 97.2 4.4E-05 1.5E-09 75.0 -1.0 44 99-148 96-139 (665)
195 3uie_A Adenylyl-sulfate kinase 97.1 9.8E-05 3.4E-09 61.0 1.0 32 3-34 24-65 (200)
196 1rz3_A Hypothetical protein rb 97.1 9.9E-05 3.4E-09 61.1 0.6 30 3-32 21-59 (201)
197 3cf0_A Transitional endoplasmi 97.1 0.00076 2.6E-08 59.4 6.3 54 95-148 101-167 (301)
198 1knq_A Gluconate kinase; ALFA/ 97.0 0.00016 5.6E-09 58.0 0.9 30 3-32 7-41 (175)
199 3llm_A ATP-dependent RNA helic 96.9 0.00058 2E-08 57.8 3.5 64 86-152 162-227 (235)
200 2qor_A Guanylate kinase; phosp 96.9 0.00023 8E-09 58.9 0.9 21 1-21 9-29 (204)
201 2dhr_A FTSH; AAA+ protein, hex 96.9 1.5E-05 5.1E-10 75.9 -7.3 98 7-113 67-187 (499)
202 3io5_A Recombination and repai 96.8 0.0072 2.5E-07 54.3 10.5 120 2-146 27-173 (333)
203 3ney_A 55 kDa erythrocyte memb 96.8 0.00026 9.1E-09 59.2 1.1 20 2-21 17-36 (197)
204 3bos_A Putative DNA replicatio 96.8 0.0021 7.2E-08 53.2 6.5 43 101-144 103-147 (242)
205 4e22_A Cytidylate kinase; P-lo 96.8 0.00032 1.1E-08 60.3 1.3 19 3-21 26-44 (252)
206 1ypw_A Transitional endoplasmi 96.7 0.00098 3.4E-08 66.8 4.5 57 94-150 289-355 (806)
207 3t34_A Dynamin-related protein 96.7 0.0027 9.2E-08 57.2 7.1 59 84-143 154-212 (360)
208 2w58_A DNAI, primosome compone 96.7 0.00056 1.9E-08 56.1 2.3 17 5-21 55-71 (202)
209 1zu4_A FTSY; GTPase, signal re 96.7 0.00053 1.8E-08 61.4 2.2 31 3-33 104-143 (320)
210 1cke_A CK, MSSA, protein (cyti 96.7 0.00038 1.3E-08 58.0 1.2 21 1-21 2-22 (227)
211 1l8q_A Chromosomal replication 96.6 0.00052 1.8E-08 60.7 1.6 43 101-144 97-140 (324)
212 1q57_A DNA primase/helicase; d 96.6 0.007 2.4E-07 57.0 9.5 68 92-160 342-441 (503)
213 3vaa_A Shikimate kinase, SK; s 96.6 0.00049 1.7E-08 56.7 1.2 20 2-21 23-42 (199)
214 2zts_A Putative uncharacterize 96.6 0.0015 5E-08 54.8 4.2 62 98-159 131-206 (251)
215 3kta_A Chromosome segregation 96.6 0.00047 1.6E-08 55.6 1.0 18 4-21 26-43 (182)
216 3bgw_A DNAB-like replicative h 96.6 0.0016 5.4E-08 60.9 4.7 117 2-144 195-319 (444)
217 3cm0_A Adenylate kinase; ATP-b 96.5 0.00047 1.6E-08 55.6 0.6 21 1-21 1-21 (186)
218 3h4m_A Proteasome-activating n 96.5 0.0045 1.5E-07 53.3 6.5 54 95-148 103-169 (285)
219 2b8t_A Thymidine kinase; deoxy 96.4 0.003 1E-07 53.7 5.0 52 102-159 89-150 (223)
220 2v1u_A Cell division control p 96.4 0.00073 2.5E-08 60.3 1.3 45 102-146 130-178 (387)
221 3cmw_A Protein RECA, recombina 96.4 0.021 7E-07 61.4 12.3 132 2-161 381-552 (1706)
222 2qt1_A Nicotinamide riboside k 96.4 0.00066 2.3E-08 56.0 0.8 19 3-21 20-38 (207)
223 3tqc_A Pantothenate kinase; bi 96.4 0.00078 2.7E-08 60.5 1.2 111 6-117 94-211 (321)
224 3lxx_A GTPase IMAP family memb 96.4 0.014 4.9E-07 49.0 8.9 44 100-143 110-154 (239)
225 3cr8_A Sulfate adenylyltranfer 96.4 0.00064 2.2E-08 65.4 0.3 31 3-33 368-409 (552)
226 3euj_A Chromosome partition pr 96.3 0.0081 2.8E-07 56.7 7.8 72 81-159 376-464 (483)
227 2pez_A Bifunctional 3'-phospho 96.3 0.00094 3.2E-08 53.8 1.0 19 3-21 4-22 (179)
228 3cmu_A Protein RECA, recombina 96.3 0.013 4.4E-07 63.8 9.9 134 2-161 381-552 (2050)
229 3cmw_A Protein RECA, recombina 96.3 0.021 7E-07 61.4 11.3 71 91-161 797-901 (1706)
230 3k53_A Ferrous iron transport 96.2 0.0021 7.1E-08 55.5 2.7 51 111-161 144-194 (271)
231 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0013 4.3E-08 52.2 1.1 20 3-22 22-41 (149)
232 1w1w_A Structural maintenance 96.0 0.0016 5.6E-08 60.2 1.1 18 3-20 25-42 (430)
233 2v54_A DTMP kinase, thymidylat 95.9 0.0022 7.5E-08 52.3 1.4 21 1-21 1-21 (204)
234 2rhm_A Putative kinase; P-loop 95.9 0.0021 7E-08 51.9 1.1 21 1-21 2-22 (193)
235 1qhx_A CPT, protein (chloramph 95.9 0.0022 7.4E-08 51.2 1.1 19 3-21 2-20 (178)
236 3t61_A Gluconokinase; PSI-biol 95.8 0.0018 6.1E-08 53.2 0.5 18 4-21 18-35 (202)
237 2plr_A DTMP kinase, probable t 95.8 0.0024 8.2E-08 52.2 1.1 21 1-21 1-21 (213)
238 1xx6_A Thymidine kinase; NESG, 95.8 0.025 8.5E-07 46.7 7.3 52 102-159 81-142 (191)
239 3nwj_A ATSK2; P loop, shikimat 95.8 0.0019 6.6E-08 55.7 0.5 19 3-21 47-65 (250)
240 2if2_A Dephospho-COA kinase; a 95.8 0.002 7E-08 52.7 0.6 16 6-21 3-18 (204)
241 3lw7_A Adenylate kinase relate 95.7 0.0024 8.2E-08 50.1 0.8 17 6-22 3-19 (179)
242 2p5t_B PEZT; postsegregational 95.7 0.0028 9.7E-08 54.2 1.3 32 3-34 31-69 (253)
243 3kb2_A SPBC2 prophage-derived 95.7 0.0023 7.8E-08 50.5 0.7 16 6-21 3-18 (173)
244 4eaq_A DTMP kinase, thymidylat 95.7 0.0029 1E-07 53.6 1.3 21 1-21 23-43 (229)
245 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0028 9.5E-08 57.0 1.2 19 3-21 122-140 (331)
246 1vht_A Dephospho-COA kinase; s 95.7 0.0029 9.9E-08 52.5 1.2 21 1-21 1-21 (218)
247 2yvu_A Probable adenylyl-sulfa 95.6 0.0029 9.9E-08 51.1 1.0 19 3-21 12-30 (186)
248 3dm5_A SRP54, signal recogniti 95.6 0.12 4.3E-06 48.1 12.2 19 3-21 99-117 (443)
249 3qkt_A DNA double-strand break 95.5 0.0031 1E-07 56.5 1.0 19 3-21 22-40 (339)
250 2wwf_A Thymidilate kinase, put 95.5 0.0033 1.1E-07 51.5 1.1 21 1-21 7-27 (212)
251 3iij_A Coilin-interacting nucl 95.5 0.0031 1E-07 50.7 0.8 20 2-21 9-28 (180)
252 3trf_A Shikimate kinase, SK; a 95.5 0.0033 1.1E-07 50.5 0.9 18 4-21 5-22 (185)
253 1kht_A Adenylate kinase; phosp 95.5 0.0036 1.2E-07 50.3 1.1 19 3-21 2-20 (192)
254 1m7g_A Adenylylsulfate kinase; 95.5 0.0034 1.2E-07 52.0 0.9 20 2-21 23-42 (211)
255 2o5v_A DNA replication and rep 95.5 0.0036 1.2E-07 57.0 1.1 18 3-20 25-42 (359)
256 3qks_A DNA double-strand break 95.4 0.0037 1.3E-07 51.9 1.1 20 3-22 22-41 (203)
257 1ly1_A Polynucleotide kinase; 95.4 0.0037 1.3E-07 49.6 0.9 18 4-21 2-19 (181)
258 2www_A Methylmalonic aciduria 95.4 0.0038 1.3E-07 56.3 0.9 30 4-33 74-112 (349)
259 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.06 2.1E-06 45.2 8.4 54 95-148 91-158 (262)
260 1y63_A LMAJ004144AAA protein; 95.3 0.0046 1.6E-07 50.1 1.3 20 2-21 8-27 (184)
261 1nn5_A Similar to deoxythymidy 95.3 0.0043 1.5E-07 50.9 1.0 21 1-21 6-26 (215)
262 2c95_A Adenylate kinase 1; tra 95.3 0.0035 1.2E-07 50.7 0.4 21 1-21 6-26 (196)
263 1gvn_B Zeta; postsegregational 95.3 0.0049 1.7E-07 54.1 1.4 29 3-31 32-67 (287)
264 1ex7_A Guanylate kinase; subst 95.2 0.0039 1.3E-07 51.5 0.5 15 7-21 4-18 (186)
265 2ze6_A Isopentenyl transferase 95.2 0.0042 1.4E-07 53.3 0.7 17 5-21 2-18 (253)
266 1j8m_F SRP54, signal recogniti 95.2 0.0063 2.2E-07 53.8 1.8 19 3-21 97-115 (297)
267 2vli_A Antibiotic resistance p 95.2 0.0058 2E-07 48.8 1.4 19 3-21 4-22 (183)
268 3d8b_A Fidgetin-like protein 1 95.2 0.061 2.1E-06 48.3 8.3 18 4-21 117-134 (357)
269 1uf9_A TT1252 protein; P-loop, 95.1 0.0052 1.8E-07 49.9 0.9 19 3-21 7-25 (203)
270 1tev_A UMP-CMP kinase; ploop, 95.1 0.0053 1.8E-07 49.3 0.9 19 3-21 2-20 (196)
271 3cmu_A Protein RECA, recombina 95.1 0.049 1.7E-06 59.4 8.4 69 92-160 100-202 (2050)
272 1q3t_A Cytidylate kinase; nucl 95.0 0.0061 2.1E-07 51.4 1.1 19 3-21 15-33 (236)
273 1np6_A Molybdopterin-guanine d 95.0 0.0059 2E-07 49.7 0.9 17 5-21 7-23 (174)
274 2ffh_A Protein (FFH); SRP54, s 94.9 0.0074 2.5E-07 56.1 1.6 145 3-162 97-274 (425)
275 2jaq_A Deoxyguanosine kinase; 94.9 0.006 2E-07 49.4 0.8 16 6-21 2-17 (205)
276 3r20_A Cytidylate kinase; stru 94.9 0.0066 2.2E-07 51.9 1.0 30 116-146 110-139 (233)
277 1a7j_A Phosphoribulokinase; tr 94.9 0.0092 3.1E-07 52.4 1.9 19 3-21 4-22 (290)
278 1nks_A Adenylate kinase; therm 94.7 0.0068 2.3E-07 48.5 0.6 16 6-21 3-18 (194)
279 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.0078 2.7E-07 51.7 1.0 21 1-21 1-21 (260)
280 3v9p_A DTMP kinase, thymidylat 94.6 0.0096 3.3E-07 50.6 1.4 21 1-21 22-42 (227)
281 1via_A Shikimate kinase; struc 94.6 0.0076 2.6E-07 48.1 0.6 16 6-21 6-21 (175)
282 2qmh_A HPR kinase/phosphorylas 94.6 0.0096 3.3E-07 49.9 1.2 20 2-21 32-51 (205)
283 2gj8_A MNME, tRNA modification 94.5 0.008 2.7E-07 47.8 0.6 19 3-21 3-21 (172)
284 2z0h_A DTMP kinase, thymidylat 94.5 0.0084 2.9E-07 48.4 0.7 16 6-21 2-17 (197)
285 3m6a_A ATP-dependent protease 94.5 0.0092 3.2E-07 57.0 1.0 20 2-21 106-125 (543)
286 1zd8_A GTP:AMP phosphotransfer 94.4 0.0092 3.2E-07 49.8 0.8 20 2-21 5-24 (227)
287 1gtv_A TMK, thymidylate kinase 94.4 0.0036 1.2E-07 51.4 -1.8 16 6-21 2-17 (214)
288 1xjc_A MOBB protein homolog; s 94.4 0.0096 3.3E-07 48.4 0.8 17 5-21 5-21 (169)
289 3ake_A Cytidylate kinase; CMP 94.3 0.012 4E-07 47.9 1.1 16 6-21 4-19 (208)
290 2p67_A LAO/AO transport system 94.2 0.011 3.8E-07 53.0 0.9 31 3-33 55-94 (341)
291 2bwj_A Adenylate kinase 5; pho 94.2 0.011 3.8E-07 47.7 0.8 19 3-21 11-29 (199)
292 1ukz_A Uridylate kinase; trans 94.1 0.012 4.2E-07 47.9 0.9 18 4-21 15-32 (203)
293 2wji_A Ferrous iron transport 94.1 0.012 4.1E-07 46.2 0.7 17 5-21 4-20 (165)
294 2pbr_A DTMP kinase, thymidylat 94.0 0.012 4.3E-07 47.1 0.8 16 6-21 2-17 (195)
295 2zej_A Dardarin, leucine-rich 94.0 0.012 4E-07 47.2 0.5 16 6-21 4-19 (184)
296 3hu3_A Transitional endoplasmi 94.0 0.019 6.4E-07 54.3 2.0 53 95-147 290-352 (489)
297 1qf9_A UMP/CMP kinase, protein 93.8 0.014 4.6E-07 46.7 0.6 18 4-21 6-23 (194)
298 3tlx_A Adenylate kinase 2; str 93.8 0.018 6.2E-07 48.9 1.3 19 3-21 28-46 (243)
299 3fb4_A Adenylate kinase; psych 93.8 0.015 5.1E-07 47.9 0.7 16 6-21 2-17 (216)
300 3exa_A TRNA delta(2)-isopenten 93.7 0.017 5.8E-07 51.7 1.1 19 3-21 2-20 (322)
301 1mky_A Probable GTP-binding pr 93.7 0.024 8.3E-07 52.4 2.2 16 6-21 182-197 (439)
302 1zak_A Adenylate kinase; ATP:A 93.7 0.013 4.5E-07 48.6 0.3 19 3-21 4-22 (222)
303 2cdn_A Adenylate kinase; phosp 93.7 0.018 6.2E-07 46.9 1.1 19 3-21 19-37 (201)
304 1uj2_A Uridine-cytidine kinase 93.6 0.017 6E-07 49.1 1.0 18 4-21 22-39 (252)
305 1e6c_A Shikimate kinase; phosp 93.6 0.013 4.5E-07 46.2 0.2 17 5-21 3-19 (173)
306 3auy_A DNA double-strand break 93.6 0.017 5.8E-07 52.3 0.8 18 3-20 24-41 (371)
307 3a8t_A Adenylate isopentenyltr 93.6 0.018 6.2E-07 51.9 1.0 19 3-21 39-57 (339)
308 2wjg_A FEOB, ferrous iron tran 93.5 0.016 5.3E-07 46.1 0.5 17 5-21 8-24 (188)
309 1lw7_A Transcriptional regulat 93.5 0.034 1.1E-06 50.1 2.8 29 84-112 296-329 (365)
310 3tmk_A Thymidylate kinase; pho 93.5 0.02 6.9E-07 48.2 1.2 21 1-21 2-22 (216)
311 2pt5_A Shikimate kinase, SK; a 93.5 0.018 6.2E-07 45.2 0.8 16 6-21 2-17 (168)
312 3dl0_A Adenylate kinase; phosp 93.5 0.018 6.1E-07 47.4 0.7 16 6-21 2-17 (216)
313 1zuh_A Shikimate kinase; alpha 93.5 0.019 6.5E-07 45.3 0.9 17 5-21 8-24 (168)
314 1aky_A Adenylate kinase; ATP:A 93.5 0.021 7.2E-07 47.3 1.1 19 3-21 3-21 (220)
315 2iyv_A Shikimate kinase, SK; t 93.4 0.015 5.1E-07 46.6 0.1 17 5-21 3-19 (184)
316 2grj_A Dephospho-COA kinase; T 93.3 0.02 6.8E-07 47.2 0.7 16 6-21 14-29 (192)
317 2orw_A Thymidine kinase; TMTK, 93.3 0.022 7.5E-07 46.5 0.9 53 101-159 75-137 (184)
318 2f6r_A COA synthase, bifunctio 93.2 0.022 7.5E-07 49.6 0.9 18 4-21 75-92 (281)
319 3tqf_A HPR(Ser) kinase; transf 93.1 0.019 6.6E-07 47.1 0.4 20 2-21 14-33 (181)
320 3d3q_A TRNA delta(2)-isopenten 93.1 0.023 8E-07 51.2 1.0 17 5-21 8-24 (340)
321 1ltq_A Polynucleotide kinase; 93.1 0.023 7.8E-07 49.3 0.9 18 4-21 2-19 (301)
322 3zvl_A Bifunctional polynucleo 93.1 0.025 8.4E-07 52.2 1.1 19 3-21 257-275 (416)
323 1jbk_A CLPB protein; beta barr 92.8 0.031 1E-06 44.0 1.1 18 4-21 43-60 (195)
324 2xb4_A Adenylate kinase; ATP-b 92.7 0.027 9.3E-07 47.0 0.8 16 6-21 2-17 (223)
325 3crm_A TRNA delta(2)-isopenten 92.6 0.03 1E-06 50.1 0.9 18 4-21 5-22 (323)
326 3foz_A TRNA delta(2)-isopenten 92.6 0.032 1.1E-06 49.8 1.1 18 4-21 10-27 (316)
327 1lv7_A FTSH; alpha/beta domain 92.6 0.032 1.1E-06 47.2 1.1 18 4-21 45-62 (257)
328 4edh_A DTMP kinase, thymidylat 92.6 0.031 1.1E-06 46.8 1.0 19 3-21 5-23 (213)
329 3ice_A Transcription terminati 92.3 0.038 1.3E-06 50.9 1.2 20 2-21 172-191 (422)
330 3lv8_A DTMP kinase, thymidylat 92.3 0.036 1.2E-06 47.3 1.0 19 3-21 26-44 (236)
331 1g5t_A COB(I)alamin adenosyltr 92.2 0.11 3.8E-06 43.1 3.8 72 90-163 106-182 (196)
332 4tmk_A Protein (thymidylate ki 92.1 0.04 1.4E-06 46.2 1.0 19 3-21 2-20 (213)
333 1sxj_C Activator 1 40 kDa subu 92.1 0.032 1.1E-06 49.5 0.4 42 102-146 110-151 (340)
334 3umf_A Adenylate kinase; rossm 92.0 0.052 1.8E-06 45.7 1.6 20 2-21 27-46 (217)
335 2ocp_A DGK, deoxyguanosine kin 91.9 0.04 1.4E-06 46.4 0.8 19 3-21 1-19 (241)
336 2h92_A Cytidylate kinase; ross 91.8 0.036 1.2E-06 45.6 0.4 19 3-21 2-20 (219)
337 1e4v_A Adenylate kinase; trans 91.8 0.038 1.3E-06 45.6 0.5 16 6-21 2-17 (214)
338 1kao_A RAP2A; GTP-binding prot 91.8 0.038 1.3E-06 42.4 0.5 16 6-21 5-20 (167)
339 2ged_A SR-beta, signal recogni 91.8 0.038 1.3E-06 44.1 0.5 16 6-21 50-65 (193)
340 2dyk_A GTP-binding protein; GT 91.7 0.04 1.4E-06 42.3 0.5 16 6-21 3-18 (161)
341 1z2a_A RAS-related protein RAB 91.7 0.039 1.3E-06 42.6 0.5 16 6-21 7-22 (168)
342 1ko7_A HPR kinase/phosphatase; 91.6 0.039 1.3E-06 49.2 0.5 20 2-21 142-161 (314)
343 1ak2_A Adenylate kinase isoenz 91.6 0.051 1.7E-06 45.5 1.1 19 3-21 15-33 (233)
344 1p5z_B DCK, deoxycytidine kina 91.6 0.048 1.6E-06 46.6 1.0 19 3-21 23-41 (263)
345 1njg_A DNA polymerase III subu 91.6 0.049 1.7E-06 44.3 1.0 44 101-147 125-168 (250)
346 2ce2_X GTPase HRAS; signaling 91.6 0.038 1.3E-06 42.2 0.3 16 6-21 5-20 (166)
347 1ky3_A GTP-binding protein YPT 91.5 0.043 1.5E-06 42.9 0.5 16 6-21 10-25 (182)
348 1u8z_A RAS-related protein RAL 91.4 0.044 1.5E-06 42.1 0.5 16 6-21 6-21 (168)
349 1ek0_A Protein (GTP-binding pr 91.3 0.044 1.5E-06 42.2 0.5 16 6-21 5-20 (170)
350 1z08_A RAS-related protein RAB 91.3 0.046 1.6E-06 42.3 0.6 16 6-21 8-23 (170)
351 1jcn_A Inosine monophosphate d 91.3 0.0017 5.8E-08 61.7 -9.3 71 97-173 28-101 (514)
352 2nzj_A GTP-binding protein REM 91.3 0.046 1.6E-06 42.5 0.5 16 6-21 6-21 (175)
353 2ga8_A Hypothetical 39.9 kDa p 91.3 0.046 1.6E-06 49.6 0.5 19 3-21 21-41 (359)
354 3be4_A Adenylate kinase; malar 91.2 0.048 1.7E-06 45.1 0.6 18 4-21 5-22 (217)
355 4ad8_A DNA repair protein RECN 91.2 0.022 7.7E-07 53.8 -1.6 18 4-21 60-77 (517)
356 3q85_A GTP-binding protein REM 91.2 0.046 1.6E-06 42.3 0.5 15 7-21 5-19 (169)
357 1moz_A ARL1, ADP-ribosylation 91.2 0.036 1.2E-06 43.6 -0.2 21 6-26 20-43 (183)
358 3eph_A TRNA isopentenyltransfe 91.2 0.051 1.8E-06 50.1 0.8 18 4-21 2-19 (409)
359 1c1y_A RAS-related protein RAP 91.2 0.048 1.6E-06 42.0 0.5 16 6-21 5-20 (167)
360 2p65_A Hypothetical protein PF 91.1 0.043 1.5E-06 43.1 0.2 18 4-21 43-60 (187)
361 1wms_A RAB-9, RAB9, RAS-relate 91.1 0.049 1.7E-06 42.5 0.5 16 6-21 9-24 (177)
362 3q72_A GTP-binding protein RAD 91.1 0.045 1.5E-06 42.3 0.3 15 7-21 5-19 (166)
363 2erx_A GTP-binding protein DI- 91.1 0.05 1.7E-06 42.0 0.5 16 6-21 5-20 (172)
364 1fzq_A ADP-ribosylation factor 91.1 0.046 1.6E-06 43.5 0.3 16 6-21 18-33 (181)
365 3l0i_B RAS-related protein RAB 91.1 0.099 3.4E-06 42.1 2.3 17 6-22 35-51 (199)
366 1g16_A RAS-related protein SEC 91.0 0.047 1.6E-06 42.2 0.3 15 7-21 6-20 (170)
367 2fu5_C RAS-related protein RAB 91.0 0.078 2.7E-06 41.7 1.6 17 6-22 10-26 (183)
368 3ld9_A DTMP kinase, thymidylat 91.0 0.059 2E-06 45.6 1.0 19 3-21 20-38 (223)
369 1z0j_A RAB-22, RAS-related pro 91.0 0.051 1.8E-06 41.9 0.5 16 6-21 8-23 (170)
370 3tw8_B RAS-related protein RAB 91.0 0.053 1.8E-06 42.3 0.6 15 7-21 12-26 (181)
371 4b4t_K 26S protease regulatory 90.9 0.98 3.4E-05 41.8 9.2 54 96-149 259-325 (428)
372 1r8s_A ADP-ribosylation factor 90.8 0.053 1.8E-06 41.7 0.5 15 7-21 3-17 (164)
373 1upt_A ARL1, ADP-ribosylation 90.8 0.054 1.9E-06 41.9 0.5 16 6-21 9-24 (171)
374 3ihw_A Centg3; RAS, centaurin, 90.8 0.057 1.9E-06 43.2 0.6 16 6-21 22-37 (184)
375 1j3b_A ATP-dependent phosphoen 90.7 0.064 2.2E-06 51.0 1.0 20 3-22 224-243 (529)
376 2fn4_A P23, RAS-related protei 90.7 0.054 1.8E-06 42.3 0.3 16 6-21 11-26 (181)
377 1f6b_A SAR1; gtpases, N-termin 90.6 0.045 1.5E-06 44.4 -0.2 17 5-21 26-42 (198)
378 2wsm_A Hydrogenase expression/ 90.6 0.061 2.1E-06 44.0 0.6 16 6-21 32-47 (221)
379 1r2q_A RAS-related protein RAB 90.5 0.059 2E-06 41.5 0.5 16 6-21 8-23 (170)
380 4hlc_A DTMP kinase, thymidylat 90.4 0.071 2.4E-06 44.3 0.9 18 4-21 2-19 (205)
381 3bc1_A RAS-related protein RAB 90.4 0.061 2.1E-06 42.4 0.5 16 6-21 13-28 (195)
382 1m2o_B GTP-binding protein SAR 90.4 0.057 2E-06 43.4 0.3 17 5-21 24-40 (190)
383 2y8e_A RAB-protein 6, GH09086P 90.4 0.058 2E-06 42.0 0.3 16 6-21 16-31 (179)
384 3pqc_A Probable GTP-binding pr 90.4 0.053 1.8E-06 42.9 0.1 16 6-21 25-40 (195)
385 3cf2_A TER ATPase, transitiona 90.3 0.14 4.9E-06 51.2 3.1 55 95-149 290-354 (806)
386 2hxs_A RAB-26, RAS-related pro 90.3 0.064 2.2E-06 41.9 0.5 16 6-21 8-23 (178)
387 3cbq_A GTP-binding protein REM 90.2 0.064 2.2E-06 43.4 0.5 16 6-21 25-40 (195)
388 2lkc_A Translation initiation 90.2 0.086 2.9E-06 41.1 1.2 18 4-21 8-25 (178)
389 2cxx_A Probable GTP-binding pr 90.2 0.056 1.9E-06 42.7 0.1 15 7-21 4-18 (190)
390 1ii2_A Phosphoenolpyruvate car 90.1 0.05 1.7E-06 51.7 -0.3 19 3-21 212-230 (524)
391 4dsu_A GTPase KRAS, isoform 2B 90.1 0.068 2.3E-06 42.1 0.5 15 7-21 7-21 (189)
392 1svi_A GTP-binding protein YSX 90.1 0.058 2E-06 43.0 0.1 16 6-21 25-40 (195)
393 2oil_A CATX-8, RAS-related pro 90.1 0.067 2.3E-06 42.7 0.5 16 6-21 27-42 (193)
394 4fcw_A Chaperone protein CLPB; 90.1 0.077 2.6E-06 45.8 0.9 32 97-129 113-145 (311)
395 2a9k_A RAS-related protein RAL 90.0 0.069 2.3E-06 41.9 0.5 16 6-21 20-35 (187)
396 1mh1_A RAC1; GTP-binding, GTPa 90.0 0.069 2.4E-06 41.9 0.5 16 6-21 7-22 (186)
397 2g6b_A RAS-related protein RAB 90.0 0.069 2.4E-06 41.8 0.5 16 6-21 12-27 (180)
398 2efe_B Small GTP-binding prote 89.9 0.074 2.5E-06 41.6 0.6 16 6-21 14-29 (181)
399 3con_A GTPase NRAS; structural 89.9 0.071 2.4E-06 42.3 0.5 16 6-21 23-38 (190)
400 2v3c_C SRP54, signal recogniti 89.9 0.09 3.1E-06 48.8 1.2 18 4-21 99-116 (432)
401 4ag6_A VIRB4 ATPase, type IV s 89.9 0.074 2.5E-06 48.1 0.6 19 2-20 33-51 (392)
402 1nrj_B SR-beta, signal recogni 89.8 0.073 2.5E-06 43.4 0.5 16 6-21 14-29 (218)
403 3clv_A RAB5 protein, putative; 89.8 0.075 2.6E-06 42.1 0.5 16 6-21 9-24 (208)
404 3kkq_A RAS-related protein M-R 89.8 0.074 2.5E-06 41.9 0.5 16 6-21 20-35 (183)
405 2bov_A RAla, RAS-related prote 89.8 0.074 2.5E-06 42.6 0.5 16 6-21 16-31 (206)
406 2hf9_A Probable hydrogenase ni 89.8 0.076 2.6E-06 43.6 0.5 17 5-21 39-55 (226)
407 2qag_A Septin-2, protein NEDD5 89.7 0.066 2.3E-06 48.3 0.1 15 7-21 40-54 (361)
408 2bme_A RAB4A, RAS-related prot 89.7 0.071 2.4E-06 42.0 0.3 16 6-21 12-27 (186)
409 1z0f_A RAB14, member RAS oncog 89.6 0.077 2.6E-06 41.3 0.5 16 6-21 17-32 (179)
410 1m7b_A RND3/RHOE small GTP-bin 89.6 0.072 2.5E-06 42.3 0.3 16 6-21 9-24 (184)
411 3bwd_D RAC-like GTP-binding pr 89.6 0.078 2.7E-06 41.5 0.5 16 6-21 10-25 (182)
412 3t1o_A Gliding protein MGLA; G 89.5 0.079 2.7E-06 41.9 0.5 15 7-21 17-31 (198)
413 1knx_A Probable HPR(Ser) kinas 89.5 0.078 2.7E-06 47.2 0.4 28 2-29 145-176 (312)
414 3t5g_A GTP-binding protein RHE 89.4 0.077 2.6E-06 41.7 0.3 16 6-21 8-23 (181)
415 1ksh_A ARF-like protein 2; sma 89.4 0.083 2.8E-06 41.8 0.5 16 6-21 20-35 (186)
416 2yc2_C IFT27, small RAB-relate 89.2 0.088 3E-06 42.2 0.5 17 6-22 22-38 (208)
417 2gf9_A RAS-related protein RAB 89.2 0.087 3E-06 41.9 0.5 16 6-21 24-39 (189)
418 2olr_A Phosphoenolpyruvate car 89.1 0.1 3.5E-06 49.7 1.0 19 3-21 240-258 (540)
419 1z06_A RAS-related protein RAB 89.1 0.09 3.1E-06 41.8 0.5 16 6-21 22-37 (189)
420 2chg_A Replication factor C sm 89.1 0.089 3E-06 42.2 0.5 43 101-146 101-143 (226)
421 1ytm_A Phosphoenolpyruvate car 89.1 0.087 3E-06 50.2 0.5 19 3-21 233-252 (532)
422 1vg8_A RAS-related protein RAB 89.0 0.093 3.2E-06 42.2 0.5 16 6-21 10-25 (207)
423 2fg5_A RAB-22B, RAS-related pr 89.0 0.087 3E-06 42.2 0.3 16 6-21 25-40 (192)
424 3tkl_A RAS-related protein RAB 88.8 0.095 3.2E-06 41.6 0.5 16 6-21 18-33 (196)
425 3b1v_A Ferrous iron uptake tra 88.8 0.097 3.3E-06 45.4 0.5 16 6-21 5-20 (272)
426 2h57_A ADP-ribosylation factor 88.8 0.092 3.1E-06 41.8 0.3 16 6-21 23-38 (190)
427 2a5j_A RAS-related protein RAB 88.8 0.097 3.3E-06 41.8 0.5 15 7-21 24-38 (191)
428 1zbd_A Rabphilin-3A; G protein 88.7 0.098 3.4E-06 42.0 0.5 16 6-21 10-25 (203)
429 4bas_A ADP-ribosylation factor 88.7 0.1 3.5E-06 41.5 0.6 16 6-21 19-34 (199)
430 2cjw_A GTP-binding protein GEM 88.7 0.098 3.4E-06 42.2 0.5 43 102-148 82-127 (192)
431 2ew1_A RAS-related protein RAB 88.7 0.092 3.2E-06 42.8 0.3 16 6-21 28-43 (201)
432 3n70_A Transport activator; si 88.7 0.1 3.4E-06 40.4 0.5 39 102-143 76-114 (145)
433 2gf0_A GTP-binding protein DI- 88.6 0.095 3.2E-06 41.7 0.3 16 6-21 10-25 (199)
434 2atv_A RERG, RAS-like estrogen 88.6 0.1 3.5E-06 41.8 0.5 16 6-21 30-45 (196)
435 3c5c_A RAS-like protein 12; GD 88.6 0.1 3.5E-06 41.7 0.5 16 6-21 23-38 (187)
436 2il1_A RAB12; G-protein, GDP, 88.5 0.1 3.5E-06 41.8 0.5 15 7-21 29-43 (192)
437 1zj6_A ADP-ribosylation factor 88.5 0.096 3.3E-06 41.6 0.3 16 6-21 18-33 (187)
438 3dz8_A RAS-related protein RAB 88.4 0.099 3.4E-06 41.7 0.3 15 7-21 26-40 (191)
439 2qen_A Walker-type ATPase; unk 88.4 0.13 4.3E-06 44.8 1.0 18 4-21 31-48 (350)
440 2o52_A RAS-related protein RAB 88.4 0.1 3.4E-06 42.2 0.3 15 7-21 28-42 (200)
441 2fh5_B SR-beta, signal recogni 88.3 0.11 3.7E-06 42.2 0.5 16 6-21 9-24 (214)
442 2iwr_A Centaurin gamma 1; ANK 88.3 0.08 2.7E-06 41.5 -0.3 16 6-21 9-24 (178)
443 2xtp_A GTPase IMAP family memb 88.3 0.11 3.6E-06 44.0 0.4 16 6-21 24-39 (260)
444 3sr0_A Adenylate kinase; phosp 88.3 0.12 4.1E-06 43.0 0.7 16 6-21 2-17 (206)
445 1c9k_A COBU, adenosylcobinamid 88.2 0.092 3.2E-06 43.0 0.0 15 7-21 2-16 (180)
446 3reg_A RHO-like small GTPase; 88.2 0.11 3.8E-06 41.4 0.5 16 6-21 25-40 (194)
447 1zd9_A ADP-ribosylation factor 88.1 0.11 3.9E-06 41.3 0.5 15 7-21 25-39 (188)
448 4djt_A GTP-binding nuclear pro 88.1 0.12 3.9E-06 42.2 0.5 16 6-21 13-28 (218)
449 3cph_A RAS-related protein SEC 88.1 0.11 3.9E-06 41.8 0.5 16 6-21 22-37 (213)
450 2q3h_A RAS homolog gene family 88.1 0.11 3.9E-06 41.6 0.5 16 6-21 22-37 (201)
451 2b6h_A ADP-ribosylation factor 88.1 0.11 3.6E-06 41.8 0.3 16 6-21 31-46 (192)
452 3t5d_A Septin-7; GTP-binding p 88.0 0.11 3.7E-06 44.6 0.3 15 7-21 11-25 (274)
453 1x3s_A RAS-related protein RAB 88.0 0.12 4E-06 41.0 0.5 16 6-21 17-32 (195)
454 2p5s_A RAS and EF-hand domain 88.0 0.12 4E-06 41.6 0.5 16 6-21 30-45 (199)
455 2bcg_Y Protein YP2, GTP-bindin 88.0 0.11 3.7E-06 41.9 0.3 16 6-21 10-25 (206)
456 3oes_A GTPase rhebl1; small GT 87.8 0.11 3.8E-06 41.8 0.3 15 7-21 27-41 (201)
457 3iev_A GTP-binding protein ERA 87.8 0.13 4.5E-06 45.2 0.7 18 4-21 10-27 (308)
458 2fv8_A H6, RHO-related GTP-bin 87.8 0.12 4E-06 42.0 0.3 16 6-21 27-42 (207)
459 2qu8_A Putative nucleolar GTP- 87.8 0.12 4.1E-06 42.7 0.5 16 6-21 31-46 (228)
460 1sky_E F1-ATPase, F1-ATP synth 87.7 0.14 4.7E-06 48.2 0.8 20 2-21 149-168 (473)
461 1gwn_A RHO-related GTP-binding 87.7 0.12 4E-06 42.3 0.3 16 6-21 30-45 (205)
462 3lxw_A GTPase IMAP family memb 87.7 0.12 4.3E-06 43.7 0.5 58 89-147 89-151 (247)
463 3llu_A RAS-related GTP-binding 87.6 0.12 4E-06 41.6 0.3 16 6-21 22-37 (196)
464 2j1l_A RHO-related GTP-binding 87.6 0.12 4.1E-06 42.3 0.3 16 6-21 36-51 (214)
465 2h17_A ADP-ribosylation factor 87.5 0.1 3.5E-06 41.2 -0.2 16 6-21 23-38 (181)
466 2x77_A ADP-ribosylation factor 87.5 0.1 3.5E-06 41.4 -0.2 16 6-21 24-39 (189)
467 3th5_A RAS-related C3 botulinu 87.4 0.11 3.7E-06 41.9 0.0 17 6-22 32-48 (204)
468 1wf3_A GTP-binding protein; GT 87.4 0.14 4.8E-06 44.9 0.7 18 4-21 7-24 (301)
469 2gco_A H9, RHO-related GTP-bin 87.4 0.12 4.2E-06 41.6 0.3 16 6-21 27-42 (201)
470 3gj0_A GTP-binding nuclear pro 87.4 0.13 4.3E-06 42.2 0.3 17 6-22 17-33 (221)
471 2f7s_A C25KG, RAS-related prot 87.4 0.14 4.6E-06 41.7 0.5 16 6-21 27-42 (217)
472 2atx_A Small GTP binding prote 87.3 0.13 4.4E-06 40.9 0.3 16 6-21 20-35 (194)
473 4gzl_A RAS-related C3 botulinu 87.2 0.13 4.4E-06 41.8 0.3 16 6-21 32-47 (204)
474 2qby_B CDC6 homolog 3, cell di 87.0 0.17 5.7E-06 44.9 1.0 18 4-21 45-62 (384)
475 1x6v_B Bifunctional 3'-phospho 86.9 0.17 5.8E-06 49.3 1.0 19 3-21 51-69 (630)
476 3syl_A Protein CBBX; photosynt 86.8 0.18 6E-06 43.5 1.0 41 102-144 130-178 (309)
477 1d2n_A N-ethylmaleimide-sensit 86.7 0.15 5.2E-06 43.4 0.5 17 5-21 65-81 (272)
478 1sxj_D Activator 1 41 kDa subu 86.6 0.16 5.3E-06 44.6 0.5 14 7-20 61-74 (353)
479 2fna_A Conserved hypothetical 86.5 0.16 5.5E-06 44.2 0.5 17 5-21 31-47 (357)
480 3co5_A Putative two-component 86.5 0.13 4.4E-06 39.7 -0.1 40 102-143 75-114 (143)
481 3iby_A Ferrous iron transport 86.5 0.15 5.1E-06 43.6 0.3 16 6-21 3-18 (256)
482 2g3y_A GTP-binding protein GEM 86.3 0.17 5.8E-06 41.9 0.5 15 7-21 40-54 (211)
483 2q6t_A DNAB replication FORK h 86.2 2.2 7.4E-05 39.2 8.1 76 83-160 291-397 (444)
484 3a1s_A Iron(II) transport prot 86.1 0.17 5.9E-06 43.2 0.5 16 6-21 7-22 (258)
485 2ohf_A Protein OLA1, GTP-bindi 86.1 0.17 5.7E-06 46.5 0.5 18 3-20 21-38 (396)
486 3uk6_A RUVB-like 2; hexameric 86.1 0.19 6.4E-06 44.5 0.7 37 103-143 190-226 (368)
487 2hup_A RAS-related protein RAB 86.1 0.16 5.6E-06 41.0 0.3 15 7-21 32-46 (201)
488 2j0v_A RAC-like GTP-binding pr 85.9 0.16 5.6E-06 41.0 0.3 16 6-21 11-26 (212)
489 3gmt_A Adenylate kinase; ssgci 85.8 0.19 6.4E-06 42.7 0.6 16 6-21 10-25 (230)
490 2r62_A Cell division protease 85.7 0.087 3E-06 44.7 -1.6 16 6-21 46-61 (268)
491 1ofh_A ATP-dependent HSL prote 85.6 0.19 6.6E-06 43.0 0.6 18 4-21 50-67 (310)
492 1m8p_A Sulfate adenylyltransfe 85.6 0.22 7.4E-06 47.9 1.0 19 3-21 395-413 (573)
493 1xwi_A SKD1 protein; VPS4B, AA 85.5 0.23 8E-06 43.8 1.1 18 4-21 45-62 (322)
494 4dhe_A Probable GTP-binding pr 85.5 0.083 2.9E-06 43.1 -1.7 16 6-21 31-46 (223)
495 3t15_A Ribulose bisphosphate c 85.5 0.23 7.8E-06 43.2 1.0 18 4-21 36-53 (293)
496 3cpj_B GTP-binding protein YPT 85.4 0.2 6.8E-06 41.1 0.5 16 6-21 15-30 (223)
497 3i8s_A Ferrous iron transport 85.4 0.18 6.3E-06 43.4 0.3 16 6-21 5-20 (274)
498 3q3j_B RHO-related GTP-binding 85.3 0.2 6.7E-06 41.1 0.5 16 6-21 29-44 (214)
499 3hws_A ATP-dependent CLP prote 85.3 0.21 7.2E-06 44.6 0.7 19 3-21 50-68 (363)
500 2qgz_A Helicase loader, putati 85.3 0.24 8.2E-06 43.5 1.0 49 101-150 213-264 (308)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.6e-45 Score=338.85 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=155.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHh-c--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIF-G--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~-~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.+||++|++.+++.+|+.+++. + .
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 799999999999999999 5899999999864 356999999999999999987552 2 2
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 33332 3467899999996 47889999999999999999999999999999999999999999999999999877
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
.|+|||+||||++++..+||||++|++|++++.|+++++....
T Consensus 213 ~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 7999999999999999999999999999999999999987643
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.1e-45 Score=336.53 Aligned_cols=174 Identities=19% Similarity=0.287 Sum_probs=155.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-hccC--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-FGVA-- 60 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~~~~-- 60 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.+||++|+..+|+.+|+.+++ +++.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 699999999999999999 5899999999865 35699999999999999998765 3332
Q ss_pred CCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 61 GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 61 ~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
+.. .+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|.++.++.
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 222 24567899999996 478899999999999999999999999999999999999999999999888887777
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|+|||+||||++++..+||||++|++|+++..|+++++....
T Consensus 189 g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp TCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 999999999999999999999999999999999999987643
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.4e-45 Score=323.55 Aligned_cols=173 Identities=25% Similarity=0.313 Sum_probs=149.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCC-CCccCcHHHHH-hc--c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVP-IQMDVSAEKMI-FG--V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~-~~~~lt~~~~~-~~--~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.+||++|++. .+..+|+.+++ ++ .
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~ 112 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN 112 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH
Confidence 799999999999999999 5899999999865 346999999863 33467887654 32 2
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~ 192 (275)
T 3gfo_A 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192 (275)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence 33332 3467889999986 47789999999999999999999999999999999999999999999999998734
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|||+||||++++..+||||++|++|++++.|+++++...
T Consensus 193 ~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 193 LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 599999999999999999999999999999999999998754
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1e-44 Score=335.31 Aligned_cols=174 Identities=26% Similarity=0.295 Sum_probs=156.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-c--cCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.+||++|++.+|+.+|+.+++. + ..+.+.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 699999999999999999 5899999999865 356999999999999999987653 2 233443
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|+||
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ti 187 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 3567899999986 5788999999999999999999999999999999999999999999999999987679999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
|++|||++++..+||||++|++|+++..|+++++....
T Consensus 188 i~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999999999999999987643
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7.3e-45 Score=316.59 Aligned_cols=170 Identities=21% Similarity=0.331 Sum_probs=145.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~ 109 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHH
Confidence 799999999999999999 5899999999764 135999999999999999987542 2
Q ss_pred cC---CCCH----HHHHHHHHHcCCC--c-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 59 VA---GIDP----QRRAELIKVLDID--L-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 59 ~~---~~~~----~~~~~~l~~~~l~--~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
.. .... +++.++++.+++. . ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~ 189 (235)
T 3tif_A 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189 (235)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 2232 3456788889985 2 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+++++.|+|||+||||++.+ .+||||++|++|+++..++++++.
T Consensus 190 ~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 190 KLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 98765699999999999965 789999999999999998887754
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.8e-44 Score=317.99 Aligned_cols=172 Identities=21% Similarity=0.257 Sum_probs=151.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCCccCcHHHHH-hc---c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQMDVSAEKMI-FG---V 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~~~lt~~~~~-~~---~ 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++ ++ .
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~ 128 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV 128 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999 5899999999764 24599999998888899988754 22 2
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 33332 3467889999985 46789999999999999999999999999999999999999999999999998765
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|+|||++|||++++..+||++++|++|+++..|+++++...
T Consensus 209 -g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 209 -GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp -TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred -CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999988653
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.2e-44 Score=319.12 Aligned_cols=172 Identities=25% Similarity=0.314 Sum_probs=152.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC--C-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA--G- 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~- 61 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|++.+++.+|+.+++. +.. .
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG 115 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence 699999999999999999 5899999999875 245999999988888899987653 321 1
Q ss_pred -CCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 62 -IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 62 -~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
...+++.++++.+++. .++++.+|||||||||+|||||++ +|++|||||||+|||+.++..++++|+++++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 1235678899999985 467899999999999999999999 9999999999999999999999999999977
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|+|||+||||++++..+||||++|++|++++.|+++++..
T Consensus 196 ~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 196 QEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 657899999999999999999999999999999999998864
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-44 Score=315.74 Aligned_cols=172 Identities=22% Similarity=0.323 Sum_probs=151.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---------------------ccEEEecccCCCCccCcH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---------------------REVAFAGFEVPIQMDVSA 52 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---------------------~~i~~v~~~~~~~~~lt~ 52 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|++.+++.+|+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv 110 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 110 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcH
Confidence 799999999999999999 58999999997642 359999999888899998
Q ss_pred HHHHh-c---cCCCCH----HHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHH
Q 024989 53 EKMIF-G---VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 121 (259)
Q Consensus 53 ~~~~~-~---~~~~~~----~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~ 121 (259)
.+++. + ..+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 111 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~ 190 (262)
T 1b0u_A 111 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190 (262)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 87542 1 223332 3467889999985 36789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 122 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 122 ~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++++|++++++ |+|||++|||++++..+||++++|++|+++..|+++++...
T Consensus 191 ~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 191 EVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp HHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999998764 99999999999999999999999999999999999988653
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-44 Score=328.20 Aligned_cols=173 Identities=25% Similarity=0.355 Sum_probs=154.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hc--cCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~--~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+|+.+|+.+++ ++ ..+.+.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 699999999999999999 5899999999864 45799999999999999998765 32 233332
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.|+||
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 199 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 3567899999996 4788999999999999999999999999999999999999999999999999876669999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|++|||++++..+||||++|++|+++..|+++++...
T Consensus 200 i~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 200 VFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999998764
No 10
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-44 Score=313.69 Aligned_cols=171 Identities=21% Similarity=0.293 Sum_probs=150.6
Q ss_pred cEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHHh-ccC--CCC--H
Q 024989 5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIF-GVA--GID--P 64 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~~~--~ 64 (259)
|+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +.. +.. .
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 9999999999999999 5899999999764 346999999988889999987653 221 111 2
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
+++.++++.+++. .++++.+|||||||||+|||||+++|++|||||||+|||+.++..++++|++++++.|+|||++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt 184 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567889999985 46789999999999999999999999999999999999999999999999998765699999999
Q ss_pred CChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 143 HIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 143 H~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
||++++..+||++++|++|+++..|+++++...
T Consensus 185 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999988653
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-44 Score=327.75 Aligned_cols=173 Identities=28% Similarity=0.317 Sum_probs=154.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++ ++. .+.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 699999999999999999 5899999999864 35699999999999999998765 333 22221
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.|+|+
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS 187 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 3567899999996 4788999999999999999999999999999999999999999999999999876669999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|++|||++++..+||||++|++|+++..|+++++...
T Consensus 188 i~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998764
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.5e-44 Score=315.35 Aligned_cols=168 Identities=13% Similarity=0.210 Sum_probs=148.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV---- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~---- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 111 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 111 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhc
Confidence 799999999999999999 5899999999764 235999999988888899987652 21
Q ss_pred CC-----------CC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHH
Q 024989 60 AG-----------ID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 60 ~~-----------~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~ 122 (259)
.+ .. .+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~ 191 (257)
T 1g6h_A 112 ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191 (257)
T ss_dssp SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred cCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 12 12 23467889999985 477899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhH
Q 024989 123 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 171 (259)
Q Consensus 123 ~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 171 (259)
++++|++++++ |+|||++|||++++..+||++++|++|+++..|++++
T Consensus 192 l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 192 IFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999998764 9999999999999999999999999999999999887
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-43 Score=312.30 Aligned_cols=171 Identities=20% Similarity=0.286 Sum_probs=151.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHh-c--cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIF-G--VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. . .++..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 119 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999 5899999999864 356999999998888899887542 1 22333
Q ss_pred H----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 64 P----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 64 ~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
. +++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|+|
T Consensus 120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~t 198 (256)
T 1vpl_A 120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLT 198 (256)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCE
Confidence 2 3467889999986 4678999999999999999999999999999999999999999999999999865 5999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
||++|||++++..+||++++|++|+++..|+++++.+
T Consensus 199 iiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999988864
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-43 Score=326.67 Aligned_cols=173 Identities=27% Similarity=0.330 Sum_probs=154.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++ ++. .+.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 699999999999999999 5899999999865 35699999999999999998765 332 23332
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++.|+|+
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 3467899999986 4788999999999999999999999999999999999999999999999999876669999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|++|||++++..+||||++|++|+++..|+++++...
T Consensus 188 i~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 188 VYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999998754
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.5e-43 Score=306.16 Aligned_cols=164 Identities=23% Similarity=0.274 Sum_probs=143.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEecccCCCCccCcHHHHHh-c--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAGFEVPIQMDVSAEKMIF-G-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~~~~~~~~~lt~~~~~~-~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++. +.++|++|++.+++.+|+.+++. +
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 108 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML 108 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence 799999999999999999 58999999997641 45999999988888899887542 2
Q ss_pred cCCCC----HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~----~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.. .+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 188 (224)
T 2pcj_A 109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188 (224)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 22332 23467889999985 4678999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
+ |+|||++|||++++ .+||++++|++|+++..|+
T Consensus 189 ~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 189 G-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp T-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred C-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 5 99999999999988 7999999999999998875
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=7.2e-44 Score=327.35 Aligned_cols=173 Identities=23% Similarity=0.281 Sum_probs=154.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHH-hcc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMI-FGV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~-~~~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++ ++.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 109 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 699999999999999999 5899999999754 34699999999999999998765 333
Q ss_pred CCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 60 AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 60 ~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 189 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 23332 3467899999996 47889999999999999999999999999999999999999999999999998766
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|||++|||++++..+||||++|++|+++..|+++++...
T Consensus 190 ~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 699999999999999999999999999999999999998764
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-43 Score=308.92 Aligned_cols=171 Identities=15% Similarity=0.231 Sum_probs=148.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---------cccEEEecccCCCCccCcHHHHHh-cc-CCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~ 62 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. +. ...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 110 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence 799999999999999999 5899999999864 234999999998899999987653 22 111
Q ss_pred --C--HHHHHHHHHHcC-CC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 63 --D--PQRRAELIKVLD-ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 63 --~--~~~~~~~l~~~~-l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
. .+.+.++++.++ +. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|
T Consensus 111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g 189 (240)
T 1ji0_A 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG 189 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence 1 234567888884 74 4678999999999999999999999999999999999999999999999999875 59
Q ss_pred cEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|||++|||++++..+||++++|++|+++..|+++++..
T Consensus 190 ~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 190 TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999999999999888754
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-43 Score=325.29 Aligned_cols=173 Identities=24% Similarity=0.315 Sum_probs=154.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCC-C
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-D 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~-~ 63 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++ ++. .+. .
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 689999999999999999 5899999999875 35699999999999999998765 322 121 2
Q ss_pred HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 024989 64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 141 (259)
Q Consensus 64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~ 141 (259)
.+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|+|||++
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 25678899999986 4788999999999999999999999999999999999999999999999999877679999999
Q ss_pred eCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 142 THIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 142 sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|||++++..+|||+++|++|+++..|+++++...
T Consensus 185 THd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp ESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998754
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.6e-43 Score=326.93 Aligned_cols=173 Identities=21% Similarity=0.241 Sum_probs=148.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------cccEEEecccCCCCccCcHHHHH-hcc--CCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++ ++. .+.+.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 699999999999999999 5899999999864 35699999999999999998765 333 23332
Q ss_pred ----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 65 ----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 65 ----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 195 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 3467899999996 4788999999999999999999999999999999999999999999999999876669999
Q ss_pred EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 139 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 139 ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
|++|||++++..+||||++|++|+++..|+++++...
T Consensus 196 i~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998764
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.8e-43 Score=325.46 Aligned_cols=173 Identities=25% Similarity=0.295 Sum_probs=153.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec------------cccEEEecccCCCCccCcHHHHH-hc--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW------------RREVAFAGFEVPIQMDVSAEKMI-FG-- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt~~~~~-~~-- 58 (259)
+||+++|+|||||||||| +++|+|.++|+++ ++.++|++|+..+|+.+|+.+++ ++
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 799999999999999999 5899999999754 24699999999999999998765 32
Q ss_pred cCCCCH----HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~~----~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
..+.+. +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.+
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 233332 3467899999996 4788999999999999999999999999999999999999999999999999876
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+.|+|+|++|||++++..+||||++|++|+++..|+++++...
T Consensus 188 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 6699999999999999999999999999999999999998754
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-42 Score=308.01 Aligned_cols=172 Identities=25% Similarity=0.275 Sum_probs=149.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccC-CCCccCcHHHHH-hccC---C--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEV-PIQMDVSAEKMI-FGVA---G-- 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~-~~~~~lt~~~~~-~~~~---~-- 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++ ..++.+|+.+++ ++.. .
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 111 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHH
Confidence 799999999999999999 5899999999864 45799999985 456678888755 3221 1
Q ss_pred CCHHHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 62 IDPQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 62 ~~~~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
...+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~t 190 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKT 190 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCE
T ss_pred HHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCE
Confidence 1245678899999996 36789999999999999999999999999999999999999999999999998765 999
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
||++|||++++..+||++++|++|+++..|+++++...
T Consensus 191 ii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 191 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999887653
No 22
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-42 Score=304.91 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=150.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-CCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~ 63 (259)
+||+++|+|||||||||| ++ |+|.++|.++ ++.++|++|++.+++.+|+.+++. +. ....
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR 103 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCc
Confidence 799999999999999999 47 9999999864 346999999988888889987653 22 1223
Q ss_pred HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 024989 64 PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK-------VLLLDEITVDLDVLARADLLRFLRKECEER 134 (259)
Q Consensus 64 ~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~-------lllLDEPt~gLD~~~~~~~~~~l~~~~~~~ 134 (259)
.+++.++++.+++. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~- 182 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ- 182 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-
Confidence 56678899999985 467899999999999999999999999 99999999999999999999999998764
Q ss_pred CcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 135 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 135 g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
|+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus 183 g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999888753
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-42 Score=309.33 Aligned_cols=171 Identities=23% Similarity=0.351 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec----------cccEEEecccCCCC--ccCcHHHHHh-cc-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW----------RREVAFAGFEVPIQ--MDVSAEKMIF-GV- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~----------~~~i~~v~~~~~~~--~~lt~~~~~~-~~- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.++ ..+|+.+++. +.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~ 125 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAF 125 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhh
Confidence 799999999999999999 5899999999764 24699999987543 3468887653 21
Q ss_pred -----CC-CCH---HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 60 -----AG-IDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 60 -----~~-~~~---~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
.+ ... +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~ 205 (279)
T 2ihy_A 126 KSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILD 205 (279)
T ss_dssp --------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred hccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 11 122 3466789999985 477899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEE--EEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 129 KECEERGATI--IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 129 ~~~~~~g~ti--ii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++++ |+|| |++|||++++..+||++++|++|+++..|+++++..
T Consensus 206 ~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 206 SLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 98765 9999 999999999999999999999999999999888754
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.4e-42 Score=302.18 Aligned_cols=166 Identities=17% Similarity=0.256 Sum_probs=144.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHh-ccC---C----CC--
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA---G----ID-- 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~-~~~---~----~~-- 63 (259)
+||+++|+|||||||||| +++|+|. +++.++|++|++.+++.+|+.+++. +.. + ..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence 799999999999999999 4899998 3467999999988888889887552 211 1 12
Q ss_pred -HHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 64 -PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 64 -~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
.+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 23467889999986 467899999999999999999999999999999999999999999999999987655999999
Q ss_pred EeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 141 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+|||++++..+||++++|++|+ +..|+++++..
T Consensus 185 vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 185 TTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999 99999888753
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-41 Score=297.07 Aligned_cols=169 Identities=22% Similarity=0.302 Sum_probs=144.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. +....+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~ 112 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSV 112 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCH
Confidence 799999999999999999 5899999999764 346999999988775 58887664 3222345
Q ss_pred HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++
T Consensus 113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~- 191 (247)
T 2ff7_A 113 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI- 191 (247)
T ss_dssp HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-
Confidence 5566777777663 12356899999999999999999999999999999999999999999999998
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+ .|+|||++||+++.+.. ||++++|++|+++..|+++++...
T Consensus 192 ~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 192 C-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp H-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred c-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 4 48999999999998875 999999999999999999988653
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-41 Score=301.69 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=143.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. +......
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~ 122 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPT 122 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCCh
Confidence 799999999999999999 5899999999764 346999999988776 58887653 3222111
Q ss_pred -HH---------HHHHHHHc--CCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 65 -QR---------RAELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 65 -~~---------~~~~l~~~--~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
+. +.++++.+ ++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 11 23456666 443 36778999999999999999999999999999999999999999999999987
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+++.|+|||++|||++++.. ||+|++|++|+++..|+++++...
T Consensus 203 ~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 203 PEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp TTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 65458999999999999875 999999999999999999988653
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.3e-41 Score=296.93 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=144.3
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-c---
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-G--- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~--- 58 (259)
+||+++|+|||||||||| +++|+|.++|.++. ..++|++|++.+++.+|+.+++. .
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~ 124 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA 124 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHh
Confidence 799999999999999999 25899999998642 24899999998888888876442 1
Q ss_pred ------cCCCCH----HHHHHHHHHcCCC---ccccCC-cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 59 ------VAGIDP----QRRAELIKVLDID---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 59 ------~~~~~~----~~~~~~l~~~~l~---~~~~~~-~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
....+. +++.++++.+++. .++++. +|||||||||+|||||+.+|++|||||||+|||+.++..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~ 204 (267)
T 2zu0_C 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 204 (267)
T ss_dssp HHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred hhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 111222 3466889999984 356776 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhHHH
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~~~ 173 (259)
++|+++++ .|+|||++|||++++..+ ||++++|++|+++..|+++++.
T Consensus 205 ~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 205 DGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 99998754 599999999999999886 9999999999999999988764
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.7e-41 Score=303.15 Aligned_cols=169 Identities=21% Similarity=0.265 Sum_probs=143.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|. .|+.+++ ++......
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~ 157 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGN 157 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccCCH
Confidence 699999999999999999 5899999999864 457999999988875 4777665 44433344
Q ss_pred HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++.+++. ..++..+|||||||||+|||||+.+|++|||||||++||+.+...+++.|.++.
T Consensus 158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 5555555555442 134567999999999999999999999999999999999999999999999875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 238 --~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 238 --ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp --TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred --CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 37899999999999987 999999999999999999998764
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.7e-41 Score=296.55 Aligned_cols=168 Identities=18% Similarity=0.176 Sum_probs=139.3
Q ss_pred CCcEEEEEcCCCCCcccc-----------CCceEEEEcCeecc---------ccEEEecccCCCCccCcHHHHHh-cc--
Q 024989 3 EPEMVKVLGRSAFHDTAL-----------TSSGDLSYLGGEWR---------REVAFAGFEVPIQMDVSAEKMIF-GV-- 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-----------~~~G~I~~~G~~~~---------~~i~~v~~~~~~~~~lt~~~~~~-~~-- 59 (259)
+||+++|+|||||||||| +++|+|.++|.++. ..++|++|++.+++.+|+.+++. ..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA 107 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHh
Confidence 799999999999999999 26899999998642 24889999998888899887542 11
Q ss_pred -CC--CC----HHHHHHHHHHcCCC---ccccCCc-CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 60 -AG--ID----PQRRAELIKVLDID---LSWRMHK-VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 60 -~~--~~----~~~~~~~l~~~~l~---~~~~~~~-LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
.+ .. .+++.++++.+++. .++++.+ |||||||||+|||||+.+|++|||||||+|||+.++..++++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 187 (250)
T 2d2e_A 108 KLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN 187 (250)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 11 12 23466789999983 3677888 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhcc-CCeEEEEeCCeEEEecChhH
Q 024989 129 KECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQLAMPMDK 171 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~-~drv~~l~~G~i~~~g~~~~ 171 (259)
++++ .|+|||++|||++++..+ ||++++|++|+++..|+++.
T Consensus 188 ~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 188 AMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9864 589999999999999998 59999999999999999873
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-41 Score=294.88 Aligned_cols=168 Identities=18% Similarity=0.283 Sum_probs=144.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-c-cCCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-G-VAGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~-~~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++ .|+.+++. + .....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~ 105 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYT 105 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccCCCC
Confidence 799999999999999999 5899999999764 356999999988876 48887764 3 12334
Q ss_pred HHHHHHHHHHcCCC--c-----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 64 PQRRAELIKVLDID--L-----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 64 ~~~~~~~l~~~~l~--~-----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.+++.++++.+++. . ++++.+|||||||||+|||||+++|++|||||||+|||+.++..+++.|+++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 106 DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 55677788888763 1 2346799999999999999999999999999999999999999999999988
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
. .|+|||++||+++++. .||++++|++|+++..|+++++..
T Consensus 186 ~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 186 M--KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp H--TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred c--CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 5 4899999999999886 599999999999999999988764
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-40 Score=293.88 Aligned_cols=165 Identities=23% Similarity=0.293 Sum_probs=145.0
Q ss_pred CcEEEEEcCCCCCcccc--------CCceEEEEcCeec-----cccEE-EecccCCCCccCcHHHHHh-c--cCCCCHHH
Q 024989 4 PEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEW-----RREVA-FAGFEVPIQMDVSAEKMIF-G--VAGIDPQR 66 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~-----~~~i~-~v~~~~~~~~~lt~~~~~~-~--~~~~~~~~ 66 (259)
||+++|+|||||||||| +++|+|.++|.++ ++.++ |++|++.+ .+|+.+++. . .+....++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~ 107 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDL 107 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHH
Confidence 89999999999999999 5899999999765 34799 99998776 788876542 1 22344567
Q ss_pred HHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 67 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 67 ~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
+.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. . |||++||
T Consensus 108 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtH 183 (263)
T 2pjz_A 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTH 183 (263)
T ss_dssp HHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEES
T ss_pred HHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEc
Confidence 88899999986 467899999999999999999999999999999999999999999999998763 2 9999999
Q ss_pred ChhHHhccCC-eEEEEeCCeEEEecChhHHHH
Q 024989 144 IFDGLENWPS-HIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 144 ~~~~~~~~~d-rv~~l~~G~i~~~g~~~~~~~ 174 (259)
|++++..+|| ++++|++|+++..|+++++.+
T Consensus 184 d~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 184 ELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999 999999999999999988764
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.5e-40 Score=291.07 Aligned_cols=169 Identities=17% Similarity=0.226 Sum_probs=142.2
Q ss_pred CCcEEEEEcCCCCCccccC--------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCHH
Q 024989 3 EPEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~~ 65 (259)
+||+++|+||||||||||. .+|+|.++|.++ ++.++|++|++.+++ .|+.+++. +......+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~ 123 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDE 123 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHH
Confidence 7999999999999999992 589999999764 346999999988875 58877653 32223445
Q ss_pred HHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 66 ~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.
T Consensus 124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~- 202 (260)
T 2ghi_A 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR- 202 (260)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-
Confidence 566677666642 124678999999999999999999999999999999999999999999999874
Q ss_pred hcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 133 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 133 ~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
+ |+|||++||+++.+. .||++++|++|+++..|+++++...
T Consensus 203 ~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 203 K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 3 899999999999886 4999999999999999999988653
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=286.21 Aligned_cols=163 Identities=19% Similarity=0.239 Sum_probs=132.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|||||||||| +++|+|.++| .++|++|++.+ +.+|+.+++........+...++++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-----~i~~v~Q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~ 103 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-----SVAYVPQQAWI-QNDSLRENILFGCQLEEPYYRSVIQA 103 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----CEEEECSSCCC-CSEEHHHHHHTTSCCCTTHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----EEEEEcCCCcC-CCcCHHHHhhCccccCHHHHHHHHHH
Confidence 799999999999999999 4899999998 49999998754 57788876532111122222333333
Q ss_pred ------cCCC-------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHhcCcE
Q 024989 74 ------LDID-------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR---KECEERGAT 137 (259)
Q Consensus 74 ------~~l~-------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~---~~~~~~g~t 137 (259)
+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|. ++ . .|+|
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~t 181 (237)
T 2cbz_A 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKT 181 (237)
T ss_dssp TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSE
T ss_pred HhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCE
Confidence 3321 246789999999999999999999999999999999999999999999984 33 2 4899
Q ss_pred EEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 138 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 138 iii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
||++||+++++. .||++++|++|+++..|+++++..
T Consensus 182 viivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 182 RILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999886 699999999999999999998865
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-39 Score=282.47 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=133.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|||||||||| +++|+|.++| .++|++|++.+++. |+.+++.........+..++++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~ 106 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKA 106 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----CEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----EEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHH
Confidence 799999999999999999 5899999998 49999999888775 88876642111222233444444
Q ss_pred cCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEE
Q 024989 74 LDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATII 139 (259)
Q Consensus 74 ~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l-~~~~~~~g~tii 139 (259)
+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.+ .++. .|+|||
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi 184 (229)
T 2pze_A 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRI 184 (229)
T ss_dssp TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEE
T ss_pred hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEE
Confidence 4431 12245799999999999999999999999999999999999999999974 5543 389999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++||+++++.. ||++++|++|+++..|+++++..
T Consensus 185 ~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 185 LVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp EECCCHHHHHH-CSEEEEEETTEEEEEECHHHHHT
T ss_pred EEcCChHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999864 99999999999999999988764
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=306.45 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=147.4
Q ss_pred CCcEEEEEcCCCCCccccC--------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+||+++|+||||||||||+ ++|+|.++|+++ ++.++|++|++.+|+ +|+.+++........++
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~ 124 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQE 124 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHH
Confidence 7999999999999999993 789999999864 367999999998886 58888775333345667
Q ss_pred HHHHHHHcCCC--ccccCCc-----------CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 67 RAELIKVLDID--LSWRMHK-----------VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 67 ~~~~l~~~~l~--~~~~~~~-----------LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
+.++++.+++. .++++.+ |||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.
T Consensus 125 v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-- 202 (390)
T 3gd7_A 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-- 202 (390)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--
Confidence 88899999985 4666666 99999999999999999999999999999999999999999998753
Q ss_pred cCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 134 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 134 ~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
.|+|+|++||+++.+ ..||||++|++|+|+..|+++++....
T Consensus 203 ~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 203 ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 489999999998755 459999999999999999999998653
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-40 Score=285.71 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=136.8
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec---cccEEEecccCCCCccCcHHHHHh-c--cCC--CCHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW---RREVAFAGFEVPIQMDVSAEKMIF-G--VAG--IDPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~---~~~i~~v~~~~~~~~~lt~~~~~~-~--~~~--~~~~ 65 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++.+|+.+++. + ..+ ...+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 113 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHH
Confidence 799999999999999999 5899999999864 567999999998888889887542 1 122 2345
Q ss_pred HHHHHHHHcCCCc-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 66 RRAELIKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 66 ~~~~~l~~~~l~~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
++.++++.+++.. ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+
T Consensus 114 ~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd 192 (214)
T 1sgw_A 114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSRE 192 (214)
T ss_dssp HHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESS
T ss_pred HHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 6788999999853 6778999999999999999999999999999999999999999999999998654 8999999999
Q ss_pred hhHHhccCCeEEEEeCCeE
Q 024989 145 FDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 145 ~~~~~~~~drv~~l~~G~i 163 (259)
++++..+||+++++ .|+|
T Consensus 193 ~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 193 ELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHhCCEEEEe-CCcc
Confidence 99999999998854 4554
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.6e-38 Score=282.45 Aligned_cols=162 Identities=23% Similarity=0.295 Sum_probs=132.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+||+++|+|||||||||| +++|+|.++| .++|++|++.+++. |+.+++.+. ........++++.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----~i~~v~Q~~~l~~~-tv~enl~~~-~~~~~~~~~~~~~ 135 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----RISFCSQNSWIMPG-TIKENIIGV-SYDEYRYRSVIKA 135 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----CEEEECSSCCCCSS-BHHHHHHTT-CCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----EEEEEeCCCccCcc-cHHHHhhCc-ccchHHHHHHHHH
Confidence 799999999999999999 4799999998 49999999888775 888776532 1233333445555
Q ss_pred cCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEE
Q 024989 74 LDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATII 139 (259)
Q Consensus 74 ~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l-~~~~~~~g~tii 139 (259)
+++. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+ .++. .|+|||
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tvi 213 (290)
T 2bbs_A 136 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRI 213 (290)
T ss_dssp TTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEE
T ss_pred hChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEE
Confidence 5442 11235799999999999999999999999999999999999999999974 4443 389999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++||+++++. .||++++|++|+++..|+++++..
T Consensus 214 ivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 214 LVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999886 599999999999999999988754
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-37 Score=302.84 Aligned_cols=169 Identities=21% Similarity=0.270 Sum_probs=143.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ +++++|++|++.+++. |+.+++ ++....+.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~ 444 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATD 444 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCCCCH
Confidence 799999999999999999 5899999999865 3579999999888876 787765 44433445
Q ss_pred HHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. ..++..+||||||||++|||||+++|++|||||||++||+.+...+.+.++++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 524 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 5566666655541 123456899999999999999999999999999999999999999999998874
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 525 --~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 525 --KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp --TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred --CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 47899999999999875 999999999999999999998764
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1e-37 Score=303.18 Aligned_cols=169 Identities=22% Similarity=0.277 Sum_probs=145.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-CCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+|+. |+.+++. +. ...+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~ 446 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYT 446 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCC
Confidence 799999999999999999 5899999999764 4579999999988865 8877653 33 3345
Q ss_pred HHHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 64 PQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 64 ~~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.+++.++++.+++. ..++..+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 56677777777663 12345799999999999999999999999999999999999999999999987
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 527 ~--~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 527 Q--KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred c--CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 4 3899999999999987 5999999999999999999998753
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.1e-37 Score=302.97 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=145.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-cc-CCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GV-AGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~-~~~~ 63 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++. |+.+++. +. ...+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~ 446 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEYS 446 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCCCCCC
Confidence 799999999999999999 5899999999864 3569999999988875 8877653 33 3345
Q ss_pred HHHHHHHHHHcCCC-------------ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 64 PQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 64 ~~~~~~~l~~~~l~-------------~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
.+++.++++.+++. ..++..+||||||||++|||||+++|++|||||||++||+.++..+.+.|+++
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 66677777777662 12356799999999999999999999999999999999999999999999987
Q ss_pred HHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 131 CEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 131 ~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
. + |+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 527 ~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 527 Q-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp H-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred h-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 5 3 899999999999886 5999999999999999999998753
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-37 Score=302.15 Aligned_cols=169 Identities=21% Similarity=0.259 Sum_probs=143.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ +++++|++|++.++.. |+.+++. +....+.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~ 446 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDATD 446 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCCCH
Confidence 799999999999999999 5899999999865 4569999999988865 8877663 4333444
Q ss_pred HHHHHHHHHcCC-----------C--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI-----------D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l-----------~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
++..+.++..++ + ..++..+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.
T Consensus 447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 526 (587)
T 3qf4_A 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526 (587)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence 445445444433 1 245678999999999999999999999999999999999999999999999863
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 527 --~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 527 --KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp --TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred --CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 4899999999999986 7999999999999999999998764
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.7e-37 Score=302.30 Aligned_cols=168 Identities=21% Similarity=0.294 Sum_probs=142.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCC---
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAG--- 61 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~--- 61 (259)
+||+++|+|||||||||| +++|+|.++|.++ ++.++|++|++.+++. |+.+++ ++...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~ 447 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDPSS 447 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSSTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCccc
Confidence 799999999999999999 5899999999864 3569999999988864 887765 33322
Q ss_pred CCHHHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 024989 62 IDPQRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 128 (259)
Q Consensus 62 ~~~~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~ 128 (259)
.+.+++.++++.+++. .+ ++..+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+
T Consensus 448 ~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 527 (595)
T 2yl4_A 448 VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 527 (595)
T ss_dssp SCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence 4566777888887752 12 2347999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 129 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 129 ~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 528 ~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 528 RLMD--GRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHT--TSEEEEECCCHHHHHH-SSEEEEEETTEEEEEECSCC---
T ss_pred HHhc--CCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 8753 7999999999999875 99999999999999999998865
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-37 Score=303.95 Aligned_cols=169 Identities=20% Similarity=0.280 Sum_probs=142.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||+++|+|||||||||| +++|+|.++|.++ +++++|++|++.+++. |+.+++ ++....+.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~ 458 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGATD 458 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTCCT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCCCH
Confidence 799999999999999999 5899999999875 3569999999888754 787765 34333344
Q ss_pred HHHHHHHHHcCCC--c-----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID--L-----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~-----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++.+++. . .++..+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 4555565555442 1 12336899999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 539 --~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 539 --EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp --TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred --CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 48999999999999876 999999999999999999998764
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-37 Score=299.00 Aligned_cols=167 Identities=22% Similarity=0.312 Sum_probs=144.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc--CC-CCHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDPQRRAEL 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~--~~-~~~~~~~~~ 70 (259)
+||+++|+|||||||||| +++|+|.+ ...++|++|+...++.+|+.+++... .. ...+.+.++
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 385 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL 385 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----CceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 699999999999999999 48999976 34699999988777778887765432 11 124456778
Q ss_pred HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++
T Consensus 386 l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~ 465 (538)
T 1yqt_A 386 LKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 465 (538)
T ss_dssp TTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 8888885 46789999999999999999999999999999999999999999999999998765699999999999999
Q ss_pred hccCCeEEEEeC--CeEEEecChhHHHH
Q 024989 149 ENWPSHIVYVAH--GKLQLAMPMDKVKE 174 (259)
Q Consensus 149 ~~~~drv~~l~~--G~i~~~g~~~~~~~ 174 (259)
..+||||++|++ |++...|+++++..
T Consensus 466 ~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 466 DYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999986 78888999988764
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.4e-37 Score=300.72 Aligned_cols=167 Identities=21% Similarity=0.307 Sum_probs=145.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-C-C-CCHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-A-G-IDPQRRAEL 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~-~-~~~~~~~~~ 70 (259)
+||+++|+|||||||||| +++|+|.+ ...++|++|++..++.+|+.+++... . . ...+.+.++
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 455 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 699999999999999999 48999976 35699999998777788887765432 1 1 123456788
Q ss_pred HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
++.+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++
T Consensus 456 l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 535 (607)
T ss_dssp HHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999985 46789999999999999999999999999999999999999999999999998766799999999999999
Q ss_pred hccCCeEEEEeC--CeEEEecChhHHHH
Q 024989 149 ENWPSHIVYVAH--GKLQLAMPMDKVKE 174 (259)
Q Consensus 149 ~~~~drv~~l~~--G~i~~~g~~~~~~~ 174 (259)
..+|||+++|++ |++...|+++++.+
T Consensus 536 ~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 536 DYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999986 88888999988764
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-36 Score=293.29 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=141.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc-CC---CCHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AG---IDPQRRAE 69 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~-~~---~~~~~~~~ 69 (259)
+||+++|+|||||||||| +++|+|.+.+. .++|++|+...+...|+.+++... .. .....+.+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ----ILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC----CEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe----eeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 799999999999999999 58999998753 589999987666677887755321 11 12244677
Q ss_pred HHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 70 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 70 ~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
+++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||+++
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 88888885 4778999999999999999999999999999999999999999999999999987679999999999999
Q ss_pred HhccCCeEEEEeC--CeEEEecChhHHH
Q 024989 148 LENWPSHIVYVAH--GKLQLAMPMDKVK 173 (259)
Q Consensus 148 ~~~~~drv~~l~~--G~i~~~g~~~~~~ 173 (259)
+..+||||++|++ |.....+++.++.
T Consensus 449 ~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 449 HDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999986 5666667766654
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=292.84 Aligned_cols=168 Identities=20% Similarity=0.293 Sum_probs=143.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhc-cCC--CCHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG-VAG--IDPQRRAEL 70 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~-~~~--~~~~~~~~~ 70 (259)
+||+++|+|||||||||| +++|+. + ....++|++|+.......|+.+++.. ... .......++
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~----~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 451 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-I----PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV 451 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-C----CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHT
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-c----cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHH
Confidence 579999999999999999 478863 1 13468999998766556677765532 222 234556788
Q ss_pred HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++++
T Consensus 452 l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 452 VKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp HHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999985 47889999999999999999999999999999999999999999999999998766799999999999999
Q ss_pred hccCCeEEEEeC--CeEEEecChhHHHHH
Q 024989 149 ENWPSHIVYVAH--GKLQLAMPMDKVKEA 175 (259)
Q Consensus 149 ~~~~drv~~l~~--G~i~~~g~~~~~~~~ 175 (259)
..+||||++|++ |+++..|+++++.+.
T Consensus 532 ~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 532 TYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999996 899999999998764
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-34 Score=304.18 Aligned_cols=169 Identities=23% Similarity=0.325 Sum_probs=145.4
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hcc--CCC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGV--AGI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~~ 62 (259)
+||.++|+|||||||||| +++|+|.++|.++ |+++++|||++.+|.. |+++++ ++. ...
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~ 1182 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSV 1182 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCCCC
Confidence 699999999999999999 5899999999864 5789999999998876 566655 454 234
Q ss_pred CHHHHHHHHHHcCCC---------ccc----cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 63 DPQRRAELIKVLDID---------LSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 63 ~~~~~~~~l~~~~l~---------~~~----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
+.+++.++++..++. .+. .-.+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus 1183 sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1183 TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 566777777777652 122 3357999999999999999999999999999999999999999999987
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.. .|+|+|+|+|.++.+.. ||+|+||++|+|++.|+++++.+.
T Consensus 1263 ~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1263 AR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp TS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC
T ss_pred Hc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 54 48999999999998887 999999999999999999999875
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.7e-34 Score=297.84 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=142.3
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ ++.++|++|++.++.. |+.+++ ++....+.
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~ 493 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTM 493 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCCCH
Confidence 799999999999999999 5899999999864 4569999999988876 777655 45444455
Q ss_pred HHHHHHHHHcCC---------C----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDI---------D----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l---------~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.+.++..++ . ...+..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.
T Consensus 494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573 (1284)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence 555544444332 1 134567899999999999999999999999999999999999999999998753
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
.|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 574 --~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 574 --EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp --TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred --CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 48999999999999987 999999999999999999998764
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.1e-34 Score=298.90 Aligned_cols=170 Identities=24% Similarity=0.323 Sum_probs=145.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHH-hccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~ 64 (259)
+||.++|+|||||||||| +++|+|.++|.++ +++++||+|++.+|.. |+++++ ++....+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~~~~ 521 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEGITR 521 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTTCCH
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcccchH
Confidence 799999999999999999 5899999999864 4579999999988766 565554 66655667
Q ss_pred HHHHHHHHHcCCC---------cc----ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 65 QRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 65 ~~~~~~l~~~~l~---------~~----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
+++.++++..++. .+ .+-.+||||||||++||||++.+|++|||||||++||+.+...+.+.|.++.
T Consensus 522 ~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 522 EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 7777777766541 12 2446899999999999999999999999999999999999999999998875
Q ss_pred HhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHHh
Q 024989 132 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 176 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 176 (259)
+|+|+|+|||+++.+.. ||+|++|++|+|++.|+.+|+.+..
T Consensus 602 --~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 602 --KGRTTIIIAHRLSTIRN-ADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp --TTSEEEEECSCTTTTTT-CSEEEEEETTEEEEEECHHHHHTTT
T ss_pred --CCCEEEEEcccHHHHHh-CCEEEEeeCCeeeccCCHHHHHHhh
Confidence 48999999999998865 9999999999999999999998653
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.1e-34 Score=298.24 Aligned_cols=169 Identities=22% Similarity=0.277 Sum_probs=141.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHh-ccC--CC
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIF-GVA--GI 62 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~-~~~--~~ 62 (259)
+||.++|+|||||||||| +++|+|.++|.++ +++++|++|++.++. .|+.+++. +.. ..
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~ 1136 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVV 1136 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCCC
Confidence 699999999999999999 5899999999864 467999999987764 57777663 322 23
Q ss_pred CHHHHHHHHHHcCCC---------c----cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 63 DPQRRAELIKVLDID---------L----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 63 ~~~~~~~~l~~~~l~---------~----~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
+.+++.+.++..++. . ..+..+|||||||||+|||||+.+|++|||||||+|||+.+.+.+.+.|++
T Consensus 1137 ~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 445555555554431 1 223468999999999999999999999999999999999999999999987
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHHH
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 175 (259)
. ..|+|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 1217 ~--~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1217 A--REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp H--SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred h--CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 5 358999999999999866 999999999999999999999864
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6.7e-34 Score=280.44 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=95.2
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
+++.+++. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+..++++|+++.+ .|.|||+||||
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd 263 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHD 263 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 47778875 367899999999999999999999998 9999999999999999999999999865 59999999999
Q ss_pred hhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
++++. .||++++| ++|++++.|+++++...
T Consensus 264 ~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 264 EDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp HHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred HHHHh-hCCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 99876 59999999 89999999999998754
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.2e-34 Score=275.58 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=127.1
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEE---------EEcCeec----------cccEEEecccCCCCcc---Cc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDL---------SYLGGEW----------RREVAFAGFEVPIQMD---VS 51 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I---------~~~G~~~----------~~~i~~v~~~~~~~~~---lt 51 (259)
+||+++|+|||||||||| +++|++ .+.|.++ ...+++++|....++. .+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 125 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK 125 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence 799999999999999999 478985 3556432 1246788776544332 25
Q ss_pred HHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 52 AEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
+.+++.... ..+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++
T Consensus 126 v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 126 VIELLKKAD--ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp HHHHHHHHC--SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhh--HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 555442111 123467899999985 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHG 161 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G 161 (259)
+.+ .|+|||+||||++++..+||||++|++|
T Consensus 204 l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 204 LSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHH-TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 876 5999999999999999999999999864
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.6e-33 Score=273.88 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
+..+.++.+++. .++++.+|||||||||+|||||+++| ++|||||||+|||+.++..++++|+++++ .|+|||
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi 600 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL 600 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence 445677788874 36788999999999999999999887 59999999999999999999999999875 599999
Q ss_pred EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
+||||++.+. .||||++| ++|++++.|+++++.+.
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 9999999875 59999999 89999999999998653
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-33 Score=275.99 Aligned_cols=156 Identities=20% Similarity=0.292 Sum_probs=127.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEE---------EEcCeec----------cccEEEecccCCCCcc---Cc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDL---------SYLGGEW----------RREVAFAGFEVPIQMD---VS 51 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I---------~~~G~~~----------~~~i~~v~~~~~~~~~---lt 51 (259)
+||+++|+|||||||||| +++|++ .+.|.++ ...+++++|....++. .+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence 799999999999999999 478985 3556532 1246777775433221 26
Q ss_pred HHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 52 AEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
+.+++.... ..+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++
T Consensus 196 v~e~l~~~~--~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 273 (607)
T 3bk7_A 196 VRELLKKVD--EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273 (607)
T ss_dssp HHHHHHHTC--CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhH--HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 666553211 123467899999986 4778999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989 130 ECEERGATIIYATHIFDGLENWPSHIVYVAHG 161 (259)
Q Consensus 130 ~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G 161 (259)
+.+ .|+|||+||||++++..+||||++|+++
T Consensus 274 l~~-~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 274 LAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHH-TTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHh-cCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 876 5999999999999999999999999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.7e-33 Score=281.79 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=139.8
Q ss_pred CCcEEEEEcCCCCCccccC---CceEEEEcCeecc--ccEEEecccC-CCCccCcHHHHHhc-cCCCCHHHHHHHHHHcC
Q 024989 3 EPEMVKVLGRSAFHDTALT---SSGDLSYLGGEWR--REVAFAGFEV-PIQMDVSAEKMIFG-VAGIDPQRRAELIKVLD 75 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---~~G~I~~~G~~~~--~~i~~v~~~~-~~~~~lt~~~~~~~-~~~~~~~~~~~~l~~~~ 75 (259)
+||+++|+||||||||||. ..|+| .|.+.. ..++|++|+. .+++.+|+.+++.. ..+. .+++.++++.++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lg 536 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFG 536 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCS--TTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--CCCccccceeEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcC
Confidence 7999999999999999995 45765 554432 2468888765 56778888876642 2223 566788999999
Q ss_pred CC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 76 ID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 76 l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
+. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..++++|++ .|.|||++|||++++..+|
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVC 612 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHC
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhC
Confidence 94 3678999999999999999999999999999999999999999999999986 4899999999999999999
Q ss_pred CeEEEEeCCeEE-EecChhHHHH
Q 024989 153 SHIVYVAHGKLQ-LAMPMDKVKE 174 (259)
Q Consensus 153 drv~~l~~G~i~-~~g~~~~~~~ 174 (259)
|++++|++|+++ ..|+++++..
T Consensus 613 drii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 613 EYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp SEEEEEETTEEEEEESCHHHHHH
T ss_pred CEEEEEECCeeecCCCCHHHHHh
Confidence 999999999997 5899988764
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=4.6e-33 Score=268.21 Aligned_cols=156 Identities=17% Similarity=0.269 Sum_probs=122.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEE-----------EEcCeecc--------c--cEEEecccCCCC---cc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDL-----------SYLGGEWR--------R--EVAFAGFEVPIQ---MD 49 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I-----------~~~G~~~~--------~--~i~~v~~~~~~~---~~ 49 (259)
+||+++|+|||||||||| +++|+| .+.|.++. . .+....+..... ..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK 103 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Confidence 799999999999999999 589988 56665431 1 123333322211 12
Q ss_pred CcHHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 024989 50 VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 127 (259)
Q Consensus 50 lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l 127 (259)
.++.+++.... ..+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|
T Consensus 104 ~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 104 GTVNEILTKID--ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp SBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred CcHHHHhhcch--hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 24444332211 123467889999985 47889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCe
Q 024989 128 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 162 (259)
Q Consensus 128 ~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~ 162 (259)
+++. + |+|||+||||++++..+||+|++|++|.
T Consensus 182 ~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 182 RELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9985 4 8999999999999999999999998754
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.4e-32 Score=268.06 Aligned_cols=160 Identities=17% Similarity=0.238 Sum_probs=121.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEE-----------EcCeecc--------ccE--EEecccCCCCc----
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLS-----------YLGGEWR--------REV--AFAGFEVPIQM---- 48 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~-----------~~G~~~~--------~~i--~~v~~~~~~~~---- 48 (259)
+||+++|+|||||||||| +++|+|. +.|.++. +.+ .+.++.....+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK 181 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhc
Confidence 699999999999999999 5889873 3333211 111 12222111100
Q ss_pred --cCcHHHHHhccCCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH
Q 024989 49 --DVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 124 (259)
Q Consensus 49 --~lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~ 124 (259)
..++.+++........+++.++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++
T Consensus 182 ~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~ 261 (608)
T 3j16_B 182 GPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261 (608)
T ss_dssp SSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred chhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHH
Confidence 11222222111122346788899999996 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeE
Q 024989 125 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 125 ~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i 163 (259)
++|+++.+ .|+|||+||||++++..+||||++|++|..
T Consensus 262 ~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 262 QIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999865 599999999999999999999999987654
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.3e-32 Score=276.80 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 64 PQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 64 ~~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
.+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++ .|.|||
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~g~tVI 952 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVI 952 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----CSSEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----hCCEEE
Confidence 45677899999995 2567899999999999999999999999999999999999999999888864 367999
Q ss_pred EEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 140 YATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
++|||++++..+||++++|++|+++..|+
T Consensus 953 iISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 953 IITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred EEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999987664
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.7e-30 Score=262.40 Aligned_cols=108 Identities=23% Similarity=0.371 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
+..++++.+++. ..+++.+|||||||||+||+||+.+| ++|||||||+|||+..++.+++.|+++.+ .|.|||
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVI 862 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVI 862 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Confidence 456788888885 46788999999999999999999875 79999999999999999999999999875 599999
Q ss_pred EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
+||||++.+.. ||+|++| ++|+|++.|+++++...
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 99999998876 9999999 89999999999999764
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=2.5e-30 Score=259.31 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~---p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
++.++++.+++. .++++.+|||||||||+||++|+.+ |++|||||||+|||+..+..++++|+++++ .|.|||
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVI 787 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVI 787 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 456789999985 3678999999999999999999996 799999999999999999999999999875 599999
Q ss_pred EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
+||||++++ .+||||++| ++|++++.|+++++...
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999 689999999 79999999999998653
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=6.5e-30 Score=257.54 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 024989 66 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 66 ~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tii 139 (259)
+..++++.+++. .++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..++++|+++.+ .|.|||
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI 902 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL 902 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 345788999985 36789999999999999999999875 99999999999999999999999999875 599999
Q ss_pred EEeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 140 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 140 i~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
+||||++++. .||||++| ++|++++.|+++++...
T Consensus 903 visHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 903 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp EECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 9999999975 79999999 78999999999998753
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.3e-29 Score=255.95 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=96.6
Q ss_pred HHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 024989 67 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 140 (259)
Q Consensus 67 ~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii 140 (259)
..++++.+++. .++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..++++|+++.+ .|.|||+
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIv 921 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIV 921 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 45688888884 36789999999999999999999875 99999999999999999999999999875 5999999
Q ss_pred EeCChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 141 ATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 141 ~sH~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
||||++++ ..||||++| ++|++++.|+++++...
T Consensus 922 isHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp ECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred EcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHhC
Confidence 99999998 479999999 68999999999998753
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.7e-31 Score=250.51 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=128.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCce-E-EEEcCeeccccEEEecccCCC---CccCcHHHHHhccC---CC-CH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSG-D-LSYLGGEWRREVAFAGFEVPI---QMDVSAEKMIFGVA---GI-DP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G-~-I~~~G~~~~~~i~~v~~~~~~---~~~lt~~~~~~~~~---~~-~~ 64 (259)
+||+++|+|||||||||| +++| + |.++| +.++.++|++|+..+ +..+++.+++++.. +. ..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~ 215 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLL 215 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeeeccchhhcccccccchhhhhcccccccCcchH
Confidence 799999999999999999 3799 8 99998 456779999998743 33456654444321 11 11
Q ss_pred HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHH--HccCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG--LLKPFKV----LLLDE-ITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~a--l~~~p~l----llLDE-Pt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
+++.++++.+++.....+.+|||||||||+||+| |+.+|++ ||||| ||++||+. +..+.++++ +.|.|
T Consensus 216 ~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~t 290 (460)
T 2npi_A 216 HNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVN 290 (460)
T ss_dssp CCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCC
T ss_pred HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCC
Confidence 2234567777775322278999999999999999 9999999 99999 99999998 544555443 35789
Q ss_pred EEEEeCChh------HHhccCCe-----EEEEe-CCeEEEecChhHHH
Q 024989 138 IIYATHIFD------GLENWPSH-----IVYVA-HGKLQLAMPMDKVK 173 (259)
Q Consensus 138 iii~sH~~~------~~~~~~dr-----v~~l~-~G~i~~~g~~~~~~ 173 (259)
+|++||+.+ ++..+||+ |++|+ +|+++ .++++++.
T Consensus 291 viiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 291 IMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred EEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999999988 88899999 99999 99999 89988764
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.2e-27 Score=220.39 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE----
Q 024989 85 VSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV---- 158 (259)
Q Consensus 85 LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l---- 158 (259)
||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|+++. .|.|||+|||+++.+ .+||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999986 389999999999776 579999999
Q ss_pred eCCeEEEec
Q 024989 159 AHGKLQLAM 167 (259)
Q Consensus 159 ~~G~i~~~g 167 (259)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999988653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=1.2e-26 Score=213.76 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=78.0
Q ss_pred cccCCcCCHHHHHHHHHHHHHc------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 79 SWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
++++.+|||||||||+||+||+ .+|++|||||||+|||+..+..+++.|+++.+ .|.|||+||||++. ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence 3567899999999999999999 79999999999999999999999999999864 59999999999998 5679
Q ss_pred CeEEEEeCCeEEE
Q 024989 153 SHIVYVAHGKLQL 165 (259)
Q Consensus 153 drv~~l~~G~i~~ 165 (259)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999875
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=7.3e-27 Score=192.87 Aligned_cols=138 Identities=8% Similarity=-0.026 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCCCCccccCCc---eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC-c
Q 024989 3 EPEMVKVLGRSAFHDTALTSS---GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-L 78 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~~---G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~-~ 78 (259)
+||+++|+||||||||||... |...+.+..+ .++++|+.... ......+. ............+.. .
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~---~g~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~g~~~~ 77 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFC---RGLMSDDENDQ---TVTGAAFD----VLHYIVSKRLQLGKLTV 77 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHH---HHHHCSSTTCG---GGHHHHHH----HHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHH---HHHhcCcccch---hhHHHHHH----HHHHHHHHHHhCCCeEE
Confidence 699999999999999999642 2211111111 13444432110 00000000 000011111223332 2
Q ss_pred cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL----------------ARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~----------------~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
.......|+|||||++||+|++.+|++|+|||||++||+. .+..+++.|+++.++ |.|+|++|
T Consensus 78 ~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vt 156 (171)
T 4gp7_A 78 VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYIL 156 (171)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEe
Confidence 2344567999999999999999999999999999999999 668899999888765 99999999
Q ss_pred CChhHHhcc
Q 024989 143 HIFDGLENW 151 (259)
Q Consensus 143 H~~~~~~~~ 151 (259)
||++++..+
T Consensus 157 H~~~~~~~~ 165 (171)
T 4gp7_A 157 NSPEEVEEV 165 (171)
T ss_dssp CSHHHHHHE
T ss_pred CCHHHhhhh
Confidence 999999864
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=5.3e-24 Score=192.49 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=74.8
Q ss_pred cccCCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCe
Q 024989 79 SWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 154 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~dr 154 (259)
+.++.+||+|||||++||+||+ .+|++|||||||++||+..+..++++|+++. .|.|||++||+.+ +..+||+
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~ 290 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-VMEAADL 290 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-HHhhCce
Confidence 3467899999999999999997 6899999999999999999999999999873 3889999999964 6678998
Q ss_pred E--EEEeCCeEEE-ecChhH
Q 024989 155 I--VYVAHGKLQL-AMPMDK 171 (259)
Q Consensus 155 v--~~l~~G~i~~-~g~~~~ 171 (259)
+ ++|.+|.... ....++
T Consensus 291 ~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEEESSSCEEEEECCC--
T ss_pred EEEEEEeCCEEEEEEEEcch
Confidence 7 7888876543 444443
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=2.2e-26 Score=196.63 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=84.6
Q ss_pred CCcEEEEEcCCCCCcccc--------CCceEEEEcC-----eeccccEEEecccCCCCc-cC--cHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL--------TSSGDLSYLG-----GEWRREVAFAGFEVPIQM-DV--SAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G-----~~~~~~i~~v~~~~~~~~-~l--t~~~~~~~~~~~~~~~ 66 (259)
+||+++|+|||||||||| +++|+|.... ...++.++|++|++.... .+ .....+... ...+.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~--~~~~~ 98 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDM--VEPEV 98 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTT--SCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHh--ccHHH
Confidence 589999999999999999 3688884311 123456899988751111 11 001111110 12234
Q ss_pred HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+.++++. ++ |||||++|||||+.+|++|||||||+| ++..++++|+++ + .|+||| +|||++
T Consensus 99 ~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 99 IPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp HHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred HHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 5555554 32 999999999999999999999999999 888899999887 4 589999 999998
Q ss_pred HHhc
Q 024989 147 GLEN 150 (259)
Q Consensus 147 ~~~~ 150 (259)
++..
T Consensus 160 ~~~~ 163 (208)
T 3b85_A 160 QVDL 163 (208)
T ss_dssp ----
T ss_pred HHhC
Confidence 7654
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=1.4e-24 Score=180.89 Aligned_cols=136 Identities=12% Similarity=0.030 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCccccCC--ceE--EEEcCee--------ccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 6 MVKVLGRSAFHDTALTS--SGD--LSYLGGE--------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~--~G~--I~~~G~~--------~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
.++|+||||||||||.. .|. |.++|.+ .++.++|++|+... .+.++.......
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~------~~~~~~~~~~~~--------- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEG------KKKIFSSKFFTS--------- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTC------CEEEEEETTCCC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcH------HHHHHHhhcCCc---------
Confidence 58999999999999941 110 4444432 23467888776411 111111100000
Q ss_pred cCCCccccCCcCCHHHHHHHHHHHH-----HccCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe---C
Q 024989 74 LDIDLSWRMHKVSDGQRRRVQICMG-----LLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIYAT---H 143 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv~ia~a-----l~~~p~lllLDE--Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s---H 143 (259)
.-..++++.+||||||||++||+| ++.+|++||||| ||++||+..++.+.+.+.+ .+.|+|++| |
T Consensus 67 -~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h 141 (178)
T 1ye8_A 67 -KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRD 141 (178)
T ss_dssp -SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSC
T ss_pred -cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCC
Confidence 001356788999999999999996 999999999999 9999999999988888764 467788888 5
Q ss_pred ChhHHhccCCeEEEEeCCeEEE
Q 024989 144 IFDGLENWPSHIVYVAHGKLQL 165 (259)
Q Consensus 144 ~~~~~~~~~drv~~l~~G~i~~ 165 (259)
+++++..+|+| .+|+++.
T Consensus 142 ~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 142 VHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp CSHHHHHHHTC----TTCEEEE
T ss_pred CchHHHHHHhc----CCcEEEE
Confidence 99999999998 5566654
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=1.5e-22 Score=204.50 Aligned_cols=106 Identities=22% Similarity=0.372 Sum_probs=96.1
Q ss_pred HHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024989 68 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 142 (259)
Q Consensus 68 ~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s 142 (259)
.+.+..+|+. .++++.+|||||||||+||+||+.+|+ +|||||||+||||..+..++++|+++.+ .|.|||+||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVt 523 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVE 523 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEEC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 4567778874 467899999999999999999999887 9999999999999999999999999864 599999999
Q ss_pred CChhHHhccCCeEEEE------eCCeEEEecChhHHHHH
Q 024989 143 HIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 175 (259)
Q Consensus 143 H~~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~~ 175 (259)
||++++.. ||+|++| ++|++++.|+++++...
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 99998876 9999999 89999999999998754
No 72
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.88 E-value=2.1e-22 Score=163.17 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=74.3
Q ss_pred cccCCcCCHHHHHHHHHH------HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 79 SWRMHKVSDGQRRRVQIC------MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia------~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
++++.+||||||||++|| +||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||++ ++..+|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG-GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH-HHHHhC
Confidence 457899999999999876 899999999999999999999999999999998765 489999999999 577899
Q ss_pred CeEEEE--eCCeE
Q 024989 153 SHIVYV--AHGKL 163 (259)
Q Consensus 153 drv~~l--~~G~i 163 (259)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45644
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=2.7e-25 Score=207.56 Aligned_cols=151 Identities=11% Similarity=0.094 Sum_probs=115.9
Q ss_pred EEEEEcCCCCCcccc---------CCceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHHHcC
Q 024989 6 MVKVLGRSAFHDTAL---------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLD 75 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~~~~ 75 (259)
+++|+|||||||||| +++|+|.++|.+..+. ++++|. +.++.+++.++. ++. ....+.++++.++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~-~~~~~ltv~D~~g~~~---~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKH-PNIPNVVFWDLPGIGS---TNFPPDTYLEKMK 145 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEEC-SSCTTEEEEECCCGGG---SSCCHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccc-cccCCeeehHhhcccc---hHHHHHHHHHHcC
Confidence 999999999999999 4799999998765333 677776 345566655432 111 1234678888888
Q ss_pred CCc-cccCCcCCHH--HHHHHHHHHHHcc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hc----
Q 024989 76 IDL-SWRMHKVSDG--QRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECE----ER---- 134 (259)
Q Consensus 76 l~~-~~~~~~LSgG--~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~----~~---- 134 (259)
+.. +..+. ||+| |+||+.||+||++ +|++++|||||+|||+..+..+++.|++++. +.
T Consensus 146 L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 146 FYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp GGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 753 33344 9999 9999999999999 9999999999999999999999999999852 22
Q ss_pred CcEEEEEeCChhH--HhccCCeEE-EEeCCe
Q 024989 135 GATIIYATHIFDG--LENWPSHIV-YVAHGK 162 (259)
Q Consensus 135 g~tiii~sH~~~~--~~~~~drv~-~l~~G~ 162 (259)
..+|++|||+++. ++++||++. .|..|.
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 3678999999998 999999985 555554
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=2.9e-25 Score=188.16 Aligned_cols=145 Identities=9% Similarity=-0.031 Sum_probs=102.1
Q ss_pred CCcEEEEEcCCCCCccccC------CceEEEEcC----ee----ccccEEEecccCCCCccCcHHHHHh---------cc
Q 024989 3 EPEMVKVLGRSAFHDTALT------SSGDLSYLG----GE----WRREVAFAGFEVPIQMDVSAEKMIF---------GV 59 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~~G----~~----~~~~i~~v~~~~~~~~~lt~~~~~~---------~~ 59 (259)
+||+++|+||||||||||. .. .|.+.+ .+ .++.++|++|++..++.+++.+.+. ..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~ 97 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR 97 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence 7999999999999999993 11 233332 11 1245788888776666666544321 11
Q ss_pred CCCCHHHHHHHH----------HHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCC----CHHHHHHH
Q 024989 60 AGIDPQRRAELI----------KVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL----DVLARADL 123 (259)
Q Consensus 60 ~~~~~~~~~~~l----------~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gL----D~~~~~~~ 123 (259)
++.+.+...+.+ +.+++. .++++..|| +|+.+|++++|||||+|+ |+..++.+
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l 166 (207)
T 1znw_A 98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRL 166 (207)
T ss_dssp EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 222332232222 222222 234566777 899999999999999998 78899999
Q ss_pred HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEe
Q 024989 124 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 159 (259)
Q Consensus 124 ~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~ 159 (259)
++.++++.++.|.|+|++|||++++..+||||++|.
T Consensus 167 ~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 167 DTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999876668999999999999999999999984
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=2.3e-21 Score=195.59 Aligned_cols=103 Identities=19% Similarity=0.290 Sum_probs=94.1
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+..+|+. +++.+.+|||||+|||+||++|..+| ++|||||||+||||.....+++.|+++. +.|.|||+||||
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Confidence 46778875 47889999999999999999999985 9999999999999999999999999986 469999999999
Q ss_pred hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989 145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE 174 (259)
Q Consensus 145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~ 174 (259)
++++. .||||++| ++|++++.|+++++..
T Consensus 566 l~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 566 EDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp HHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred HHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99886 69999999 7999999999998865
No 76
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.85 E-value=3.7e-21 Score=194.60 Aligned_cols=103 Identities=21% Similarity=0.313 Sum_probs=94.0
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~--p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+..+|+. +++.+.+|||||+|||+||++|..+ |++|||||||+||||.....+++.|+++.+ .|.|||+||||
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHd 582 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHD 582 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCC
Confidence 46667774 5788999999999999999999998 589999999999999999999999999864 69999999999
Q ss_pred hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989 145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE 174 (259)
Q Consensus 145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~ 174 (259)
++++. .||||++| ++|++++.|+++++..
T Consensus 583 l~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 583 EDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 99876 69999999 7999999999999875
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=8.4e-23 Score=183.62 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=112.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------------ccEEEecccCC-CCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------------REVAFAGFEVP-IQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------------~~i~~v~~~~~-~~~~lt~~~~~~- 57 (259)
+|++++|+|||||||||| +++|+|.+.|.+.. ..++|++|+.. .++.+++.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 689999999999999999 37999999997631 25899999877 777777766542
Q ss_pred cc-CCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 58 GV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 58 ~~-~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.. .+.+ ..+++.+|+. .++++.+|| |||++||+||+.+|+ +|+|| ||+|||+..+ ++++.+
T Consensus 179 ~~~~~~d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~ 244 (302)
T 3b9q_A 179 GKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNE 244 (302)
T ss_dssp HHHTTCS----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHH
T ss_pred HHHcCCc----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHH
Confidence 11 1111 1244555654 245678899 999999999999999 99999 9999999755 234444
Q ss_pred hcCcEEEEEeC---------ChhHHhccCCeEEEEeCCeE
Q 024989 133 ERGATIIYATH---------IFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 133 ~~g~tiii~sH---------~~~~~~~~~drv~~l~~G~i 163 (259)
+.|.|+|++|| .++.+...+..|.++..|+.
T Consensus 245 ~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 245 VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 46899999999 56677778889999999975
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.83 E-value=1.4e-20 Score=188.70 Aligned_cols=103 Identities=21% Similarity=0.312 Sum_probs=93.7
Q ss_pred HHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 70 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 70 ~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+..+|+. +++++.+|||||+|||+||++|+.+| ++|||||||+|||+...+.++++|+++.+ .|.|||+|||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence 46677875 47889999999999999999999999 59999999999999999999999999864 69999999999
Q ss_pred hhHHhccCCeEEEE------eCCeEEEecChhHHHH
Q 024989 145 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE 174 (259)
Q Consensus 145 ~~~~~~~~drv~~l------~~G~i~~~g~~~~~~~ 174 (259)
++++. .||+|++| ++|++++.|+++++..
T Consensus 441 l~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 441 LDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 99775 69999999 7999999999998865
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=1.3e-21 Score=179.68 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc--------------ccEEEecccCC-CCccCcHHHHHh-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR--------------REVAFAGFEVP-IQMDVSAEKMIF- 57 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~--------------~~i~~v~~~~~-~~~~lt~~~~~~- 57 (259)
+|++++|+|||||||||| +++|+|.+.|.+.. ..++|++|+.. .++..++.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 689999999999999999 37999999997641 25899998877 777777766542
Q ss_pred cc-CCCCHHHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 58 GV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 58 ~~-~~~~~~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.. .+.+ ..+++.+|+. .++++.+|| +||++||+||+.+|+ +|+|| ||+|||+..+. +++.+
T Consensus 236 ~~~~~~d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~ 301 (359)
T 2og2_A 236 GKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNE 301 (359)
T ss_dssp HHHTTCS----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHH
T ss_pred HHhCCCH----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHH
Confidence 11 1111 1244556654 245678899 999999999999999 99999 99999997653 34444
Q ss_pred hcCcEEEEEeC---------ChhHHhccCCeEEEEeCCeE
Q 024989 133 ERGATIIYATH---------IFDGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 133 ~~g~tiii~sH---------~~~~~~~~~drv~~l~~G~i 163 (259)
..|.|+|++|| .++.+...+..|.++..|+.
T Consensus 302 ~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 302 VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 46899999999 45667777889999999864
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.4e-20 Score=180.58 Aligned_cols=147 Identities=11% Similarity=-0.009 Sum_probs=105.4
Q ss_pred CCCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC--
Q 024989 2 VEPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-- 77 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~-- 77 (259)
.+|++++|+|+||||||||.. .|...-.|. +-+.|.+++... ........ .+++. .++. .+++.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~---~vi~~~~ee~~~----~l~~~~~~-~g~~~---~~~~-~~g~~~~ 346 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKE---RAILFAYEESRA----QLLRNAYS-WGMDF---EEME-RQNLLKI 346 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC---CEEEEESSSCHH----HHHHHHHT-TSCCH---HHHH-HTTSEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC---CEEEEEEeCCHH----HHHHHHHH-cCCCH---HHHH-hCCCEEE
Confidence 479999999999999999941 111000111 113344444211 11111111 12332 2222 34432
Q ss_pred ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHhcCcEEEEEeCCh-------
Q 024989 78 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL-----ARADLLRFLRKECEERGATIIYATHIF------- 145 (259)
Q Consensus 78 ~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~-----~~~~~~~~l~~~~~~~g~tiii~sH~~------- 145 (259)
.+..+.+||+||+||+.+|+++..+|++||+| ||++||+. .+..++++++.++ +.|+|||++||+.
T Consensus 347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~ 424 (525)
T 1tf7_A 347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSDQFMGAHS 424 (525)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECSSSSCCCS
T ss_pred EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcccccCccc
Confidence 35677899999999999999999999999999 99999999 9999999998875 4699999999999
Q ss_pred ---hHHhccCCeEEEEeCCe
Q 024989 146 ---DGLENWPSHIVYVAHGK 162 (259)
Q Consensus 146 ---~~~~~~~drv~~l~~G~ 162 (259)
..+..+||+|++|++|+
T Consensus 425 ~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 425 ITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SCSSCCTTTCSEEEEEEEEE
T ss_pred ccCcccceeeeEEEEEEEEE
Confidence 78889999999999987
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=1.4e-20 Score=167.38 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=98.7
Q ss_pred CCCcEEEEEcCCCCCccccC---------Cce-EEEEcCeec-----cccEEEecccCCC--CccCcHHHHHhccCCCCH
Q 024989 2 VEPEMVKVLGRSAFHDTALT---------SSG-DLSYLGGEW-----RREVAFAGFEVPI--QMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~---------~~G-~I~~~G~~~-----~~~i~~v~~~~~~--~~~lt~~~~~~~~~~~~~ 64 (259)
-+|++++|+||||||||||. ++| .|.+.+.+. .+++.++.+...+ ++.++... +.....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~----~~~~~~ 108 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI----IENGKF 108 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH----HHHTHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC----CCHHHH
Confidence 37999999999999999993 557 665554332 1112222122111 00111000 000000
Q ss_pred -HHHHHHHHHcCCCccccCCcCCHHH-HHHHHHHHHHccCCcEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhcC
Q 024989 65 -QRRAELIKVLDIDLSWRMHKVSDGQ-RRRVQICMGLLKPFKVLLLDEITV---D---LDV-LARADLLRFLRKECEERG 135 (259)
Q Consensus 65 -~~~~~~l~~~~l~~~~~~~~LSgG~-~qrv~ia~al~~~p~lllLDEPt~---g---LD~-~~~~~~~~~l~~~~~~~g 135 (259)
+.+.++++...+.....+.++|.++ +||+. |+++.++|+++|+||||+ + +|+ .....+.+.|++++++.|
T Consensus 109 ~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~ 187 (296)
T 1cr0_A 109 DQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTG 187 (296)
T ss_dssp HHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 1122333322332333446789998 67777 999999999999999999 5 566 677889999999987779
Q ss_pred cEEEEEeCCh--h--------------------HHhccCCeEEEEeCCeE
Q 024989 136 ATIIYATHIF--D--------------------GLENWPSHIVYVAHGKL 163 (259)
Q Consensus 136 ~tiii~sH~~--~--------------------~~~~~~drv~~l~~G~i 163 (259)
+|||++||+. + .++++||+|++|++|+.
T Consensus 188 ~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 188 VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp CEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 9999999995 5 78889999999999875
No 82
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.79 E-value=1.7e-20 Score=161.18 Aligned_cols=146 Identities=15% Similarity=0.034 Sum_probs=86.0
Q ss_pred CCcEEEEEcCCCCCccccC-----------CceEEEEcCeecc-------ccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEWR-------REVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~~-------~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~ 64 (259)
+||+++|+||||||||||. .+|.+.+.+.... +.++|.+++...+..+++.+.........
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 107 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP- 107 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc-
Confidence 7999999999999999993 3455555554321 12333333221111111111000000000
Q ss_pred HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCC-----HHHHHHHHHHHHHHHHhcCcEEE
Q 024989 65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD-----VLARADLLRFLRKECEERGATII 139 (259)
Q Consensus 65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD-----~~~~~~~~~~l~~~~~~~g~tii 139 (259)
.. + ........+.++.........-..+|++++|||||++|| +..++.+.++++.+.+ .|+|||
T Consensus 108 --~~---~-----~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii 176 (251)
T 2ehv_A 108 --SE---E-----KFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTI 176 (251)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEE
T ss_pred --cc---c-----ceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEE
Confidence 00 0 001122334455555555555568999999999999998 6777779999988754 699999
Q ss_pred EEeCChhHH---------hccC-CeEEEEeC
Q 024989 140 YATHIFDGL---------ENWP-SHIVYVAH 160 (259)
Q Consensus 140 i~sH~~~~~---------~~~~-drv~~l~~ 160 (259)
++||+++++ +.+| |+|++|++
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999998 6888 99999963
No 83
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=8e-21 Score=178.75 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=116.2
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEEcCe---ec-------------cccEEEeccc-CCCCccCcHHHH
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSYLGG---EW-------------RREVAFAGFE-VPIQMDVSAEKM 55 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~---~~-------------~~~i~~v~~~-~~~~~~lt~~~~ 55 (259)
-+||+++|+|||||||||| +++|.|.+.|+ +. ++.++|++|. .+.++.+++.++
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~ 234 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAY 234 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHH
Confidence 4799999999999999999 48999999997 32 2458999884 444555565543
Q ss_pred HhccCCCCHHHHHHHHHHcCCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 56 IFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
.... .+....-+-. .-..+..||+|| ||++|| +.+|++ |+|||+..+..+.+++.++.+
T Consensus 235 ~~~~--------ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 235 ATRI--------AEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp HHHH--------HHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSC
T ss_pred HHHH--------HHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHh
Confidence 3210 0111111100 112367899999 999999 888988 999999999999999988754
Q ss_pred ---hcCc-----EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 133 ---ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 133 ---~~g~-----tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+.|. ||+++|||++ ..+||++++|.+|+++.+++++++..
T Consensus 297 ~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 297 GIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp CSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred ccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccC
Confidence 2374 9999999999 77899999999999999998877643
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=1e-21 Score=173.80 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCcccc---------CCceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH-hcc--CC-CCHHHH
Q 024989 6 MVKVLGRSAFHDTAL---------TSSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI-FGV--AG-IDPQRR 67 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~-~~~--~~-~~~~~~ 67 (259)
.++|+|||||||||| +++|+|.++|.++ ++.++|++|+..+++.+|+.++. ++. .. ...+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 479999999999999 5899999999754 35689999998888888876543 221 11 112333
Q ss_pred HHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 68 ~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
.++++.- ..+..+.+||||||||+++|||++. +++||||++|||+.. .++++.+.+ . .+||++.|..+.
T Consensus 84 ~~~~~~~--~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 84 EKYINEQ--YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHH--HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTGGG
T ss_pred HHHHHHH--HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEecccc
Confidence 3333210 1245678999999999999999886 999999999999977 344555543 3 789998888654
No 85
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.77 E-value=5.5e-22 Score=178.44 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=94.4
Q ss_pred CCcEEEEEcCCCCCccccC------CceEEEEcCeeccccEEEecccCCCCccCcHHH-HHhccCCCCHHHHHHHHHHcC
Q 024989 3 EPEMVKVLGRSAFHDTALT------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVAGIDPQRRAELIKVLD 75 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~-~~~~~~~~~~~~~~~~l~~~~ 75 (259)
+||+++|+||||||||||. .+|+|. +|++|.+.++.. |+.+ ++......+ +.+.+.++.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~----------~~v~q~~~lf~~-ti~~~ni~~~~~~~-~~~~~~i~~~- 191 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL----------SFANHKSHFWLA-SLADTRAALVDDAT-HACWRYFDTY- 191 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEEE----------CGGGTTSGGGGG-GGTTCSCEEEEEEC-HHHHHHHHHT-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceEE----------EEecCccccccc-cHHHHhhccCcccc-HHHHHHHHHH-
Confidence 7999999999999999994 367773 345666555543 3332 221111112 2344556553
Q ss_pred CCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989 76 IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 155 (259)
Q Consensus 76 l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv 155 (259)
+.......+|||||||| ||||+.+|++|| |++||+.+...+.. +||+++.+ ..||+|
T Consensus 192 L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i 248 (305)
T 2v9p_A 192 LRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC 248 (305)
T ss_dssp TTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC
T ss_pred hHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE
Confidence 32111277999999999 999999999999 99999998887752 18998865 579999
Q ss_pred EEEeCCeEEEecChhHH
Q 024989 156 VYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 156 ~~l~~G~i~~~g~~~~~ 172 (259)
+|++|+++..|+.+++
T Consensus 249 -vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 249 -TDESGEQPFNITDADW 264 (305)
T ss_dssp -CCC---CCCCCCHHHH
T ss_pred -EEeCCEEEEeCCHHHH
Confidence 9999999999999988
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.77 E-value=3.9e-20 Score=168.05 Aligned_cols=108 Identities=12% Similarity=-0.009 Sum_probs=85.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------ccEEEecccCCCCccCcHHHHHhccCCCCHHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~ 67 (259)
+|+.++|+|||||||||| +++|.|.++|.+.. +.+++++
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------------------- 223 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF-------------------------- 223 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC--------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe--------------------------
Confidence 589999999999999999 47999999885310 0111110
Q ss_pred HHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 68 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 68 ~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
. |||+||++||+||..+|++|||||||+. ++++.|+.+. ..+.|+|+++|+.+
T Consensus 224 ----------------g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~- 276 (330)
T 2pt7_A 224 ----------------G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGS- 276 (330)
T ss_dssp ----------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSS-
T ss_pred ----------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccH-
Confidence 0 8999999999999999999999999982 3567777664 33458999999998
Q ss_pred HhccCCeEEEEeCCeE
Q 024989 148 LENWPSHIVYVAHGKL 163 (259)
Q Consensus 148 ~~~~~drv~~l~~G~i 163 (259)
+...|||+++|.+|..
T Consensus 277 ~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 277 SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHHHHHHTSG
T ss_pred HHHHhhhheehhcCCc
Confidence 7778999999988853
No 87
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=9.9e-23 Score=174.46 Aligned_cols=128 Identities=10% Similarity=0.011 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCCCccccC------CceEEEEcCeec---------cccEEEecccCCCCccCcH-HHHHh------cc
Q 024989 2 VEPEMVKVLGRSAFHDTALT------SSGDLSYLGGEW---------RREVAFAGFEVPIQMDVSA-EKMIF------GV 59 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~~---------~~~i~~v~~~~~~~~~lt~-~~~~~------~~ 59 (259)
-+|++++|+||||||||||. ..|.|.+ |.+. ++.++|++|++..|+.++. .+++. ..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 37999999999999999992 2388988 7542 2457788877655544331 11111 11
Q ss_pred CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHH-----HHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 60 AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQI-----CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 60 ~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~i-----a~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
++.+...++++++...+.. ...+|||||+||++| +++|+.+|++++|||||+++|..+...+.+.+.+..+
T Consensus 100 ~g~~~~~i~~~l~~~~~~i--l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 100 YGTLKSEYDKAKEQNKICL--FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp EEEEHHHHHHHHHTTCEEE--EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCCCcEE--EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 2233445666776543211 115799999999999 8999999999999999999999988888888887643
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=5.1e-20 Score=186.70 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=73.8
Q ss_pred cCCcCCHHHHHHHHHHHHH--ccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 81 RMHKVSDGQRRRVQICMGL--LKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al--~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
....+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ +.++..+.++.|.|+|++||+.+ +..+||++..
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e-l~~lad~~~~ 796 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE-LTALANQIPT 796 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG-GGGGGGTCTT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH-HHHHhcccce
Confidence 3457888888888888888 999999999999999999988887 67777766545999999999966 5568999999
Q ss_pred EeCCeEEEecChhHH
Q 024989 158 VAHGKLQLAMPMDKV 172 (259)
Q Consensus 158 l~~G~i~~~g~~~~~ 172 (259)
+.+|++...++.+++
T Consensus 797 v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 797 VNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEEETTEE
T ss_pred eEeeEEEEEecCCcE
Confidence 999999887766654
No 89
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=1.4e-18 Score=158.00 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=70.2
Q ss_pred ccCCcCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCC
Q 024989 80 WRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 80 ~~~~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~d 153 (259)
+++.+||||||| |+++|++|+.+|++|||||||+|||+..+..++++|.++.+ .|.|||++||+.+ +..+||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHHhCC
Confidence 467899999999 67888899999999999999999999999999999998865 4889999999955 678899
Q ss_pred eEEEEe
Q 024989 154 HIVYVA 159 (259)
Q Consensus 154 rv~~l~ 159 (259)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999885
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.76 E-value=1.5e-19 Score=153.39 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=55.2
Q ss_pred CCHHHH-HHHHHHHHHcc-------CCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 85 VSDGQR-RRVQICMGLLK-------PFKVLLLDEITVDLDVL-------A-----RADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 85 LSgG~~-qrv~ia~al~~-------~p~lllLDEPt~gLD~~-------~-----~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
++.+++ +.+..+.+++. +|+++++||||+++|+. . ...+++.|.+++++.|+|||++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344433 33555555544 99999999999999983 2 2367788888877779999999996
Q ss_pred hhH----HhccCCeEEEEeCCe
Q 024989 145 FDG----LENWPSHIVYVAHGK 162 (259)
Q Consensus 145 ~~~----~~~~~drv~~l~~G~ 162 (259)
+++ +..+||++++|++|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 555 999999999998753
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.75 E-value=2.9e-18 Score=145.23 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=68.6
Q ss_pred CcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHhc
Q 024989 83 HKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIF--------DGLEN 150 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gL--D~~~~~~~~~~l~~~~~~~g~tiii~sH~~--------~~~~~ 150 (259)
...|.++.++...+.+...+|+ ++|+||||+++ |+..+..+++.|++++++.|.|||++||+. ..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHH
T ss_pred cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhe
Confidence 3459999998888888888999 99999999887 999999999999998877799999999999 55899
Q ss_pred cCCeEEEEeCCe
Q 024989 151 WPSHIVYVAHGK 162 (259)
Q Consensus 151 ~~drv~~l~~G~ 162 (259)
+||+|++|++..
T Consensus 182 ~~d~vi~l~~~~ 193 (235)
T 2w0m_A 182 VADGIIRFRRMI 193 (235)
T ss_dssp HCSEEEEEEEEE
T ss_pred eeeEEEEEEEEe
Confidence 999999998654
No 92
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=1.6e-18 Score=165.93 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=71.6
Q ss_pred cCCcC-CHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 81 RMHKV-SDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 81 ~~~~L-SgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
++.+| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.++|+++++ |.|||+|||+++.+. .||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence 45677 999999999999999999 99999999999999999999999999863 799999999999776 5999999
Q ss_pred EeCC
Q 024989 158 VAHG 161 (259)
Q Consensus 158 l~~G 161 (259)
|.++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 93
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.75 E-value=6.4e-18 Score=140.17 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=69.4
Q ss_pred ccCCcCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989 80 WRMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 155 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv 155 (259)
+++..||||||||++||++|+. +|+++||||||+|||+.++..+.++|+++.+ +.++|++||+... ..+||++
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad~i 136 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-MANADKI 136 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-HTTCSEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-HHhCCEE
Confidence 4578999999999999999974 5799999999999999999999999998753 5689999999765 5689999
Q ss_pred EEE--eCCeE
Q 024989 156 VYV--AHGKL 163 (259)
Q Consensus 156 ~~l--~~G~i 163 (259)
+.+ .+|..
T Consensus 137 ~~v~~~~g~s 146 (173)
T 3kta_B 137 IGVSMRDGVS 146 (173)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCEE
Confidence 865 46654
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=2e-20 Score=179.49 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCCCccccC-----------CceEEEEcCeec-------cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEW-------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~-------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~ 64 (259)
+||+++|+||||||||||. ++|.|++.|.+. .+.+||++|++.....+. ...... .
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~----~~~~~~-~- 111 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF----ILDASP-D- 111 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE----EEECCC-C-
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE----EEecCc-c-
Confidence 7999999999999999992 789999999753 245777777543211110 000000 0
Q ss_pred HHHHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 65 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV-----DLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 65 ~~~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~-----gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
++..++++.+++. .++.+..||+| +|++++|||||+ +||+..++.++++++.+++ .|+|
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~t 177 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGAT 177 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCE
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCE
Confidence 0000111111111 12334455554 588999999998 4699999999999999875 6999
Q ss_pred EEEEeCChhHH---------hccCCeEEEEeC
Q 024989 138 IIYATHIFDGL---------ENWPSHIVYVAH 160 (259)
Q Consensus 138 iii~sH~~~~~---------~~~~drv~~l~~ 160 (259)
||++||+++++ ..+||+|++|++
T Consensus 178 vl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 178 TVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 99999999984 556999999998
No 95
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=2.7e-19 Score=183.16 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCCCccccCCc-eEEEEcCeeccccEE-EecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC--cc
Q 024989 4 PEMVKVLGRSAFHDTALTSS-GDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LS 79 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~~~-G~I~~~G~~~~~~i~-~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~--~~ 79 (259)
|++++|+||||||||||... |-+. +..++| ||||+.. .+++.+.++.. +++. ..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~-----~~aqiG~~Vpq~~~---~l~v~d~I~~r--------------ig~~d~~~ 846 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLA-----VMAQMGCYVPAEVC---RLTPIDRVFTR--------------LGASDRIM 846 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-----HHHTTTCCEESSEE---EECCCSBEEEE--------------CC------
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH-----HHhheeEEeccCcC---CCCHHHHHHHH--------------cCCHHHHh
Confidence 79999999999999999531 3222 234555 8887642 33333222211 1211 12
Q ss_pred ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEE
Q 024989 80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR-ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 158 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~-~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l 158 (259)
....++|++|++ +++|++++.+|+++|||||++|+|+... ..++++|+.+.++.|.++|++||+++.+..+||++.++
T Consensus 847 ~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 847 SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp ---CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence 235678888876 9999999999999999999999999874 55789998887544899999999999999999999886
Q ss_pred eCCeEE--EecCh
Q 024989 159 AHGKLQ--LAMPM 169 (259)
Q Consensus 159 ~~G~i~--~~g~~ 169 (259)
+|++. ..|++
T Consensus 926 -~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 926 -LGHMACMVENEC 937 (1022)
T ss_dssp -EEEEEEC-----
T ss_pred -cCeEEEEEecCc
Confidence 58877 34444
No 96
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=1.2e-19 Score=166.07 Aligned_cols=149 Identities=11% Similarity=0.122 Sum_probs=105.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc---c------------cEEEecccCCCCccCcHHHHHhc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR---R------------EVAFAGFEVPIQMDVSAEKMIFG 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~---~------------~i~~v~~~~~~~~~lt~~~~~~~ 58 (259)
+||.++|+|||||||||| ++.|.|.+.|++.+ . .+.++++.. ....+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~-----~~~~~r~~~ 144 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD-----RPALERMKA 144 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT-----SCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC-----CCHHHHHHH
Confidence 799999999999999999 48999999986521 1 123332210 000000000
Q ss_pred cCCCCHHHHHHHHHHc---CCC---ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 024989 59 VAGIDPQRRAELIKVL---DID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 132 (259)
Q Consensus 59 ~~~~~~~~~~~~l~~~---~l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~ 132 (259)
......+.+.+ +-. .-..+.+||+|| ||+++| +.+|++ |+||||..+..+++++.++.+
T Consensus 145 -----~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~ 209 (347)
T 2obl_A 145 -----AFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGP 209 (347)
T ss_dssp -----HHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEE
T ss_pred -----HHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhC
Confidence 00000111111 110 114578999999 899999 688887 999999999999999988754
Q ss_pred -hcCc-----EEEEEeCChhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 133 -ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 133 -~~g~-----tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
+.|. ||+++|||++ +.+||++++|.+|+++.+++.+++.
T Consensus 210 ~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 210 APKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp CSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred CCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 4587 9999999999 7899999999999999999887753
No 97
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.73 E-value=2e-20 Score=168.77 Aligned_cols=141 Identities=9% Similarity=0.025 Sum_probs=99.5
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhcc--CC----CCHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG----IDPQRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~--~~----~~~~~~ 67 (259)
+|++++|+||||||||||. +.|. +.+++++|+..+++. |+.+++... ++ .+.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~---------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~ 158 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHH---------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRAL 158 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC---------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCC---------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHH
Confidence 6899999999999999994 3332 468999998877776 766554211 12 234556
Q ss_pred HHHHHHcCCCc-cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 68 AELIKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 68 ~~~l~~~~l~~-~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
.++++.++-.. +.++.+|||||+||+++|++++.+|++||||||+..+|+.. ..+.+ ..+. .|+++|+.+
T Consensus 159 ~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~---~~D~-~I~V~a~~~ 229 (312)
T 3aez_A 159 MRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSD---LFDF-SLYVDARIE 229 (312)
T ss_dssp HHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGG---GCSE-EEEEEECHH
T ss_pred HHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHH---hcCc-EEEEECCHH
Confidence 77888776322 35678999999999999999999999999999999998521 11222 2343 466677776
Q ss_pred HH-hccCCeEEEEeCCe
Q 024989 147 GL-ENWPSHIVYVAHGK 162 (259)
Q Consensus 147 ~~-~~~~drv~~l~~G~ 162 (259)
.. ...++|.+.++++.
T Consensus 230 ~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 230 DIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 54 33556666555554
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.72 E-value=4.7e-18 Score=149.99 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCCccccC-------CceEEEEcCeec--cccEEEecccCCCCccCcHHHHHhcc-CCCCHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT-------SSGDLSYLGGEW--RREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQRRAELIK 72 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-------~~G~I~~~G~~~--~~~i~~v~~~~~~~~~lt~~~~~~~~-~~~~~~~~~~~l~ 72 (259)
+|++++|+||||||||||. ..|.+ +.|... ...+.|+..+... .. ....+..+ .........++++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~-~~g~~~~~~~~v~~~~~e~~~-~~--~~~r~~~~g~~~~~~~~~~~~~ 104 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPD-LLEVGELPTGPVIYLPAEDPP-TA--IHHRLHALGAHLSAEERQAVAD 104 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCC-TTCCCCCCCCCEEEEESSSCH-HH--HHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCC-cCCCccCCCccEEEEECCCCH-HH--HHHHHHHHHhhcChhhhhhccC
Confidence 7999999999999999994 45665 335433 2346666543221 00 11111111 1233444566778
Q ss_pred HcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC--CCCHHH---HHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 73 VLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV--DLDVLA---RADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 73 ~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~--gLD~~~---~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
.+.+. .++++..||+|++|++ ++++.+|+++|+||||+ ++|+.. ...+++.|++++++.|+|||++||+.
T Consensus 105 ~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 105 GLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 87764 3567899999997765 68888999999999999 999844 47888899988766799999999998
Q ss_pred hHHh
Q 024989 146 DGLE 149 (259)
Q Consensus 146 ~~~~ 149 (259)
....
T Consensus 182 ~~~~ 185 (279)
T 1nlf_A 182 KGAA 185 (279)
T ss_dssp ----
T ss_pred Cccc
Confidence 7654
No 99
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.72 E-value=4.2e-18 Score=156.36 Aligned_cols=84 Identities=21% Similarity=0.223 Sum_probs=76.0
Q ss_pred cCC-cCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989 81 RMH-KVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 150 (259)
Q Consensus 81 ~~~-~LSgG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~ 150 (259)
++. .||||||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc---
Confidence 455 79999999999999999 8999999999999999999999999997642 699999994 44
Q ss_pred cCCeEEEEeCCeEEEecChhHH
Q 024989 151 WPSHIVYVAHGKLQLAMPMDKV 172 (259)
Q Consensus 151 ~~drv~~l~~G~i~~~g~~~~~ 172 (259)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998775
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=6.6e-18 Score=154.46 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=86.3
Q ss_pred CCcEEEEEcCCCCCccccC-----------Cc----eE-EEEcCeec--cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTALT-----------SS----GD-LSYLGGEW--RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----------~~----G~-I~~~G~~~--~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~ 64 (259)
+|+++.|+||||||||||. ++ |. |++++.+. ++++++++|...++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~--------------- 194 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD--------------- 194 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH---------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH---------------
Confidence 6899999999999999993 22 56 77777543 2234444443322211
Q ss_pred HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc-------cCCcEEEEeCCCCCCCHHH------------HHHHHH
Q 024989 65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-------KPFKVLLLDEITVDLDVLA------------RADLLR 125 (259)
Q Consensus 65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~-------~~p~lllLDEPt~gLD~~~------------~~~~~~ 125 (259)
.+++.+-+. . ..-|.+++|++.++++++ .+|+++|+||||+++|+.. ...++.
T Consensus 195 ----~v~~ni~~~--~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~ 266 (349)
T 1pzn_A 195 ----EVLKHIYVA--R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 266 (349)
T ss_dssp ----HHGGGEEEE--E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHH
T ss_pred ----HHhhCEEEE--e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHH
Confidence 122211110 0 011567788888888887 7899999999999999852 456777
Q ss_pred HHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCCeEEEecC
Q 024989 126 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 168 (259)
Q Consensus 126 ~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G~i~~~g~ 168 (259)
.|.+++++.|+|||+++|........++.......|+++..+.
T Consensus 267 ~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 267 DLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred HHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 7788777779999999999876655444455566676655443
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.67 E-value=1.1e-17 Score=169.32 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=61.6
Q ss_pred cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHhccCCeE
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHI 155 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~-~~l~~~~~~~g~tiii~sH~~~~~~~~~drv 155 (259)
.....++|+||+|++.|+++ +.+|+++||||||+|||+.....+. .++..+.++.|.|+|++||+++.+ .+||+.
T Consensus 730 ~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 730 YKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp ----CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred HHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 34567899999999999999 8999999999999999999988886 777776655699999999998765 456654
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.67 E-value=1.3e-17 Score=146.67 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=79.9
Q ss_pred CCcEEEEEcCCCCCccccC---------C-ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S-SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 72 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~-~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~ 72 (259)
+|++++|+||||||||||. + +|+|.++|.++ .|+++....+ +. . .
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i----~~~~~~~~~~--------v~--q-----------~ 78 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI----EYVFKHKKSI--------VN--Q-----------R 78 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC----CSCCCCSSSE--------EE--E-----------E
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc----eeecCCccee--------ee--H-----------H
Confidence 7899999999999999993 5 89999988653 3333221100 00 0 0
Q ss_pred HcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 73 VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 73 ~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
.+++.. ..| |++||++|..+|++|++|||| |+.+...+ ++. +. .|.+|+++||+.+ +..+|
T Consensus 79 ~~gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~-~g~~vl~t~H~~~-~~~~~ 139 (261)
T 2eyu_A 79 EVGEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AE-TGHLVFGTLHTNT-AIDTI 139 (261)
T ss_dssp EBTTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HH-TTCEEEEEECCSS-HHHHH
T ss_pred HhCCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-Hc-cCCEEEEEeCcch-HHHHH
Confidence 222211 222 899999999999999999999 99886543 433 33 5899999999987 56778
Q ss_pred CeEEEEe
Q 024989 153 SHIVYVA 159 (259)
Q Consensus 153 drv~~l~ 159 (259)
||+++|.
T Consensus 140 dri~~l~ 146 (261)
T 2eyu_A 140 HRIVDIF 146 (261)
T ss_dssp HHHHHTS
T ss_pred HHHhhhc
Confidence 8876654
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.67 E-value=1.6e-16 Score=133.89 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=91.5
Q ss_pred CCCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcc
Q 024989 2 VEPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLS 79 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 79 (259)
-+|++++|+||||||||||.. .| .....+.|+..+..... -...+.. ...+.+.+ ++++.+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-------~~~~~v~~i~~~~~~~~-~~~~~~~-~~~~~~~~---~~~~~~----- 80 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-------LSGKKVAYVDTEGGFSP-ERLVQMA-ETRGLNPE---EALSRF----- 80 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-------HHCSEEEEEESSCCCCH-HHHHHHH-HTTTCCHH---HHHHHE-----
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-------HcCCcEEEEECCCCCCH-HHHHHHH-HhcCCChH---HHhhcE-----
Confidence 369999999999999999952 11 11123445433221100 0011111 11122221 222222
Q ss_pred ccCCcCCHHH--HHHHHHHHHHccC-CcEEEEeCCCCCCCHH--------HHHHHHHHHHHHHHhcCcEEEEEeCChh--
Q 024989 80 WRMHKVSDGQ--RRRVQICMGLLKP-FKVLLLDEITVDLDVL--------ARADLLRFLRKECEERGATIIYATHIFD-- 146 (259)
Q Consensus 80 ~~~~~LSgG~--~qrv~ia~al~~~-p~lllLDEPt~gLD~~--------~~~~~~~~l~~~~~~~g~tiii~sH~~~-- 146 (259)
.+.++|+++ +|+++.+++++.+ |+++|+||||+.+|+. ....+++.|++++++.|.|||+++|...
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~ 159 (220)
T 2cvh_A 81 -ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDS 159 (220)
T ss_dssp -EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred -EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcC
Confidence 234555554 5688888899986 9999999999999973 3345666688887777999999999876
Q ss_pred -----------HHhccCCeEEEEeCC
Q 024989 147 -----------GLENWPSHIVYVAHG 161 (259)
Q Consensus 147 -----------~~~~~~drv~~l~~G 161 (259)
.++.+||++++|++.
T Consensus 160 ~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 160 RTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCCccccCCCcceeecCcEEEEEEEe
Confidence 577899999999865
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=2e-19 Score=151.74 Aligned_cols=138 Identities=16% Similarity=0.140 Sum_probs=102.6
Q ss_pred CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCC--ccCcHHHHHh-cc--C-CCCHHHHHHHHHHcCC
Q 024989 3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ--MDVSAEKMIF-GV--A-GIDPQRRAELIKVLDI 76 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~--~~lt~~~~~~-~~--~-~~~~~~~~~~l~~~~l 76 (259)
+|++++|+||||||||||... +.|. ....++|++|+..++ ..+++.+... .+ . ..+.+.+.++++.+++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~----l~~~-~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQA----LART-LGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHH----HHHH-HGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHH----HHHH-hCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 689999999999999999520 1110 001488998887655 3456654321 11 1 1345566777887776
Q ss_pred C--ccccCCcCCHHH----HHHHHHHHHHccCCcEEEEeCCCCC-------CCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 77 D--LSWRMHKVSDGQ----RRRVQICMGLLKPFKVLLLDEITVD-------LDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 77 ~--~~~~~~~LSgG~----~qrv~ia~al~~~p~lllLDEPt~g-------LD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
. ..+++.++|+|+ +||+++|++++.+|.++++||||++ ||+.....+.+.+.+..++.|.|++.++|
T Consensus 80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4 355788999997 4788999999999999999999999 99999999999888765556999999999
Q ss_pred Ch
Q 024989 144 IF 145 (259)
Q Consensus 144 ~~ 145 (259)
++
T Consensus 160 ~~ 161 (211)
T 3asz_A 160 QY 161 (211)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 105
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.66 E-value=7e-18 Score=146.29 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=99.3
Q ss_pred CCcEEEEEcCCCCCccccCC-----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHh---ccCC------CCHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALTS-----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAG------IDPQRRA 68 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~-----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~---~~~~------~~~~~~~ 68 (259)
+|++++|+||||||||||.. -|.+.++ ..++.++|++++. ++..++..++.. +... .+.+.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~--~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVE--QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMH 100 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSC--GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhccc--ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHH
Confidence 68999999999999999952 2544443 3456799998884 666777765431 2111 1223344
Q ss_pred HHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 69 ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 69 ~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
+.++.+.-....++..||+||+||+.+ ++++.+|+++|||||....+.. +.++ .+.+|+++||+...+
T Consensus 101 ~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 101 RTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSDVRL 168 (245)
T ss_dssp HHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHHHHH
T ss_pred HHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHHHHH
Confidence 555544222456788999999999988 6888999999999999888863 2222 378999999974444
Q ss_pred -hccCCeEEEEeCCeEEEecChhHHHH
Q 024989 149 -ENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 149 -~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
..+++++ .+|+ +.+++..
T Consensus 169 ~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 169 SRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HHHHHHHT---C--------CHHHHHH
T ss_pred HHHHHHHH---HcCC-----CHHHHHH
Confidence 4455544 5664 4555543
No 106
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.65 E-value=3.8e-17 Score=162.87 Aligned_cols=113 Identities=20% Similarity=0.181 Sum_probs=79.2
Q ss_pred CcEEEEEcCCCCCccccC----------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 4 PEMVKVLGRSAFHDTALT----------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~----------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
|++++|+||||||||||. +.|.+.- .....++++++ ++..+++.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp---a~~~~i~~v~~---i~~~~~~~d------------------- 630 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP---AEEAHLPLFDG---IYTRIGASD------------------- 630 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS---SSEEEECCCSE---EEEECCC---------------------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee---hhccceeeHHH---hhccCCHHH-------------------
Confidence 899999999999999994 3444310 01122444322 222222211
Q ss_pred cCCCccccCCcCCHHHHHHHHHHHHH--ccCCcEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 74 LDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDLDVLAR-ADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv~ia~al--~~~p~lllLDEP---t~gLD~~~~-~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
.....+|+||++++.+++++ +.+|+++||||| |++||+.+. ..+.+.|.+ .|.|+|++||+.+.
T Consensus 631 ------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 631 ------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFEL 700 (765)
T ss_dssp ----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHH
T ss_pred ------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 11235799999999999999 999999999999 999999876 457777654 48999999999887
Q ss_pred HhccC
Q 024989 148 LENWP 152 (259)
Q Consensus 148 ~~~~~ 152 (259)
+. +|
T Consensus 701 ~~-~~ 704 (765)
T 1ewq_A 701 TA-LG 704 (765)
T ss_dssp HT-CC
T ss_pred HH-hh
Confidence 64 55
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.63 E-value=1.9e-18 Score=145.26 Aligned_cols=142 Identities=15% Similarity=0.036 Sum_probs=90.8
Q ss_pred CcEEEEEcCCCCCccccC--------CceEEEEcCeec------cccEEEecccCCCCccCcHHHHHhccCCCCHHHHHH
Q 024989 4 PEMVKVLGRSAFHDTALT--------SSGDLSYLGGEW------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAE 69 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~--------~~G~I~~~G~~~------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~ 69 (259)
||+++|+||||||||||. ++| |.++|... ++.++|++|+. .... .++..+. ....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~~~~-~~~~---- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLSRVG-LEPP---- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEEECC-CCCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhhccc-ccCC----
Confidence 789999999999999994 578 88888543 45688887764 1111 1111110 0000
Q ss_pred HHHHcCC--CccccCCcCCHHHHHHH-HHHH---HHccCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEE-
Q 024989 70 LIKVLDI--DLSWRMHKVSDGQRRRV-QICM---GLLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIY- 140 (259)
Q Consensus 70 ~l~~~~l--~~~~~~~~LSgG~~qrv-~ia~---al~~~p~lllLDE--Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii- 140 (259)
.... ...++...+|+|||+++ ++++ |++.+|++||||| |++.+|+...+.+.+++. . ..++|+
T Consensus 70 ---~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilg 141 (189)
T 2i3b_A 70 ---PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILG 141 (189)
T ss_dssp ---SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEE
T ss_pred ---ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEE
Confidence 0000 01234457999999988 4444 5899999999999 899999976555555543 3 334443
Q ss_pred ---EeCChhHHhccCCeEEEEeCCeEEEe
Q 024989 141 ---ATHIFDGLENWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 141 ---~sH~~~~~~~~~drv~~l~~G~i~~~ 166 (259)
+||+.+ ..++|+|..+.+|+++..
T Consensus 142 ti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 142 TIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp ECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred EeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 349874 345666666688888763
No 108
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.63 E-value=6.7e-16 Score=141.90 Aligned_cols=78 Identities=31% Similarity=0.369 Sum_probs=68.4
Q ss_pred ccCCcCCHHHHHHH------HHHHHHccC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 80 WRMHKVSDGQRRRV------QICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 80 ~~~~~LSgG~~qrv------~ia~al~~~-p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
.++..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|.++. .+.+||++||+++ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH-HHhhC
Confidence 34578999999988 567899999 99999999999999999999999998853 3568999999986 67899
Q ss_pred CeEEEEeC
Q 024989 153 SHIVYVAH 160 (259)
Q Consensus 153 drv~~l~~ 160 (259)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.62 E-value=3.9e-17 Score=146.80 Aligned_cols=132 Identities=15% Similarity=0.086 Sum_probs=88.6
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec--------------cccEEEecccCCCCccCcHHHHHhc-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW--------------RREVAFAGFEVPIQMDVSAEKMIFG- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~--------------~~~i~~v~~~~~~~~~lt~~~~~~~- 58 (259)
+|++++|+|||||||||| +++|+|.+.|.+. +..++|++|+...++..++.+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 589999999999999999 4899999999764 1347889888777776666554321
Q ss_pred c-CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 59 V-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 59 ~-~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
. .+.+ ..+++..|.. +.....++...+||++||||++.+|+ ++.|| |+++. .+++.++++.+..|
T Consensus 181 ~~~~~d----~~llDt~G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~~~~~~~~~~~~ 248 (304)
T 1rj9_A 181 KARGYD----LLFVDTAGRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGLEQAKKFHEAVG 248 (304)
T ss_dssp HHHTCS----EEEECCCCCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHHHHHHHHHHHHC
T ss_pred HhCCCC----EEEecCCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHHHHHHHHHHHcC
Confidence 0 0000 0012222321 11222234455899999999999999 55566 55554 45566666665568
Q ss_pred cEEEEEeCChh
Q 024989 136 ATIIYATHIFD 146 (259)
Q Consensus 136 ~tiii~sH~~~ 146 (259)
.|+|++||+.+
T Consensus 249 ~t~iivTh~d~ 259 (304)
T 1rj9_A 249 LTGVIVTKLDG 259 (304)
T ss_dssp CSEEEEECTTS
T ss_pred CcEEEEECCcc
Confidence 99999999843
No 110
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.62 E-value=1.3e-15 Score=142.45 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=67.8
Q ss_pred CCcCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEE
Q 024989 82 MHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 157 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~ 157 (259)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.++|.++.. .|.++|++||+... ...||++++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEEEE
Confidence 3469999999999999999 68999999999999999999999999998753 47899999999765 557999998
Q ss_pred Ee
Q 024989 158 VA 159 (259)
Q Consensus 158 l~ 159 (259)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.59 E-value=5.7e-16 Score=155.15 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=64.6
Q ss_pred CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989 83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 161 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~-~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G 161 (259)
.++|++|++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.++.|.++|++||+++.+ .+||++..+.+|
T Consensus 668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~ 745 (800)
T 1wb9_A 668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANV 745 (800)
T ss_dssp --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEE
T ss_pred hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEE
Confidence 467888765 4445556899999999999999999877775 7888877653589999999999765 589998778888
Q ss_pred eEEEec
Q 024989 162 KLQLAM 167 (259)
Q Consensus 162 ~i~~~g 167 (259)
++....
T Consensus 746 ~~~~~~ 751 (800)
T 1wb9_A 746 HLDALE 751 (800)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776644
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.56 E-value=1e-15 Score=140.36 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=47.9
Q ss_pred HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989 94 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 161 (259)
Q Consensus 94 ~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G 161 (259)
+||+||.++|++|++|||| |+... +.+.+.+. .|.|||+++|+.+.+ ..|||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETI----RLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 9999999999999999999 66543 34444443 599999999999987 679999888544
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.55 E-value=2.8e-20 Score=154.58 Aligned_cols=156 Identities=8% Similarity=0.044 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCCccccC------CceEEEEcCeecccc--EEEecccCCCCccCcHHHHHhccCCCCHHHHHHHH----
Q 024989 4 PEMVKVLGRSAFHDTALT------SSGDLSYLGGEWRRE--VAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELI---- 71 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~~~~~--i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l---- 71 (259)
|++++|+||||||||||. ++|.+.++|.++.+. .+++++....+...++.+.+... .....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHhcCC
Confidence 789999999999999993 679999998765432 34444332222222332222100 00111
Q ss_pred ----HHcCCC-ccccCCcC--CHHHHHHHHHHH------HHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 72 ----KVLDID-LSWRMHKV--SDGQRRRVQICM------GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 72 ----~~~~l~-~~~~~~~L--SgG~~qrv~ia~------al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
+.+... ..+...++ |+||+|++.++. ++..+|+...+|+ ++|+..+.. ++.+..+. +.+.+|
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~i 149 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYF 149 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSE
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEE
Confidence 100000 00122345 889988888888 8889998888883 899988888 88888764 357899
Q ss_pred EEEeCC-hhHHhccCCeEEEEeCCeEEEecChhHHH
Q 024989 139 IYATHI-FDGLENWPSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 139 ii~sH~-~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 173 (259)
|.+||. +++++++||+|+ ++|+++..|+++.+.
T Consensus 150 i~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 150 YNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp EECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred EeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 999999 999999999998 999999999887653
No 114
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.54 E-value=1.2e-16 Score=155.91 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCcccc---------C-CceEEEEcCeec-----------cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989 6 MVKVLGRSAFHDTAL---------T-SSGDLSYLGGEW-----------RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL---------~-~~G~I~~~G~~~-----------~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~ 64 (259)
.++|+|||||||||| + ++|.|+++|.++ ++.++|++|+..+++.+++.+++.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~------- 119 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN------- 119 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH-------
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH-------
Confidence 489999999999999 4 799999999762 345888888887777777654331
Q ss_pred HHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHH-hcCcE
Q 024989 65 QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI------TVDLDVLARADLLRFLRKECE-ERGAT 137 (259)
Q Consensus 65 ~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP------t~gLD~~~~~~~~~~l~~~~~-~~g~t 137 (259)
.....++.. . ..+| ++++.++.+....|+++|+||| |+|||+..+..+.++++++.+ ..+.+
T Consensus 120 ----~~~~~~~~~-~---~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ii 188 (608)
T 3szr_A 120 ----KAQNAIAGE-G---MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETIS 188 (608)
T ss_dssp ----HHHHHHHCS-S---SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCE
T ss_pred ----HHHHHhcCC-c---cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 111111110 0 0011 1122233334568999999999 999999999999999999754 34788
Q ss_pred EEEEeCChhHHhcc------------CCeEEEEeCCeEEEecChh
Q 024989 138 IIYATHIFDGLENW------------PSHIVYVAHGKLQLAMPMD 170 (259)
Q Consensus 138 iii~sH~~~~~~~~------------~drv~~l~~G~i~~~g~~~ 170 (259)
++++||+++.+... +..|+++.++.++..|+.+
T Consensus 189 l~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 189 LVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp EEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTT
T ss_pred eEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHH
Confidence 99999998743221 3568889888877766654
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.53 E-value=6.4e-16 Score=132.56 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=83.6
Q ss_pred CCCCcEEEEEcCCCCCcccc--------C---CceEEEEcCeecc----ccEEEecccCCCCccCcHHHHHhccCCCCHH
Q 024989 1 MVEPEMVKVLGRSAFHDTAL--------T---SSGDLSYLGGEWR----REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 65 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL--------~---~~G~I~~~G~~~~----~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~ 65 (259)
|-+|++++|+|||||||||| + .+|.|.+.+.+.+ ..++|++|+...|..+++...+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f--------- 83 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAF--------- 83 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCE---------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHH---------
Confidence 56899999999999999999 2 4788888876542 2466766654444333321000
Q ss_pred HHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 024989 66 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 145 (259)
Q Consensus 66 ~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~ 145 (259)
++.+.+ ...+.|-.+++ +..++..++++||| ||+.++..+++.+. .|.||+++||++
T Consensus 84 -----~E~~~~-----~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~ 140 (219)
T 1s96_A 84 -----LEHAEV-----FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSK 140 (219)
T ss_dssp -----EEEEEE-----TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSH
T ss_pred -----HHHHHH-----HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCH
Confidence 000000 00000000111 33344558999999 99999999988764 389999999999
Q ss_pred hHHhccCCeEEEEeCCeEEEecChhHHHH
Q 024989 146 DGLENWPSHIVYVAHGKLQLAMPMDKVKE 174 (259)
Q Consensus 146 ~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 174 (259)
+++.+ |+ +.+| .++++++..
T Consensus 141 ~~l~~---Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 141 IELDR---RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHH---HH--HTTS----CSCHHHHHH
T ss_pred HHHHH---HH--HHcC----CCCHHHHHH
Confidence 98876 43 6667 466666643
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.52 E-value=3.6e-17 Score=146.62 Aligned_cols=131 Identities=14% Similarity=0.045 Sum_probs=73.9
Q ss_pred EEEEcCCCCCccccC----------CceEEEEcCeec-----cccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHH
Q 024989 7 VKVLGRSAFHDTALT----------SSGDLSYLGGEW-----RREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAEL 70 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~----------~~G~I~~~G~~~-----~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~ 70 (259)
++|+|+||+|||||. ++| |.+.|.+. .+.++++++....+..+++.+.. ++......+....+
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l 99 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 99 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence 589999999999993 566 66655443 13356776665555555554322 11000000111112
Q ss_pred HHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 71 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 71 l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~g-LD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
.+.+.-..+.++.++|||||||+.+|||++ ++++||||++ ||+... ++++++..+.+.++|+++||+.
T Consensus 100 ~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 100 ISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 211100024567899999999999999886 9999999985 999873 5566555445889999999984
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.52 E-value=7.6e-14 Score=119.09 Aligned_cols=61 Identities=18% Similarity=0.366 Sum_probs=43.4
Q ss_pred cCCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhcCcEEEEEeCChhHHhc------------------
Q 024989 101 KPFKVLLLDEITVDLDVL-------A-----RADLLRFLRKECEERGATIIYATHIFDGLEN------------------ 150 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~-------~-----~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~------------------ 150 (259)
.+|+++++|||++.+|+. . ...++..|.+++++.|+|||+++|.......
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999985 3 3456677777777779999999998765543
Q ss_pred -cCCeEEEEeCC
Q 024989 151 -WPSHIVYVAHG 161 (259)
Q Consensus 151 -~~drv~~l~~G 161 (259)
+||++++|+++
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 89999999875
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.40 E-value=6.6e-15 Score=123.00 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=56.2
Q ss_pred HHHHHHHcCCC---ccccCCcCCHHHHHH-HHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 024989 67 RAELIKVLDID---LSWRMHKVSDGQRRR-VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 137 (259)
Q Consensus 67 ~~~~l~~~~l~---~~~~~~~LSgG~~qr-v~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t 137 (259)
..++++..++. ...++..+|+||+|| +..+++++.+|+++++||||+++|+.+...+++.|.++..+ |.|
T Consensus 129 ~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 129 MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 44556666664 245678899999999 89999999999999999999999999999999999987643 543
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.37 E-value=1.5e-13 Score=126.52 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCcEEEEEcCCCCCccccC---------C-ceEEEEcCeec----cccEEEecccCCCCccCcHHHHHhccCCCCHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------S-SGDLSYLGGEW----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRA 68 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~-~G~I~~~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~ 68 (259)
+|++++|+||||||||||. + +|.|.+.+.+. +..+++++|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~------------------------- 189 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR------------------------- 189 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE-------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee-------------------------
Confidence 6899999999999999993 4 79997766432 1223333331
Q ss_pred HHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 69 ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 69 ~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
.+++. +..| +.+|+++|..+|++|++|||+ |+... ...++. + ..|.+|+.++|+.+ +
T Consensus 190 ----~~g~~----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~-~~g~~vi~t~H~~~-~ 246 (372)
T 2ewv_A 190 ----EVGED----TKSF------ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-A-ETGHLVFGTLHTNT-A 246 (372)
T ss_dssp ----EBTTT----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-H-TTTCEEEECCCCCS-H
T ss_pred ----ecCCC----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-H-hcCCEEEEEECcch-H
Confidence 02221 2344 469999999999999999999 77653 344443 3 35899999999965 6
Q ss_pred hccCCeEEE
Q 024989 149 ENWPSHIVY 157 (259)
Q Consensus 149 ~~~~drv~~ 157 (259)
...|||++.
T Consensus 247 ~~~~~rl~~ 255 (372)
T 2ewv_A 247 IDTIHRIVD 255 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667777643
No 120
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.35 E-value=2.5e-12 Score=119.48 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=48.6
Q ss_pred cCCcEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHhcCcEEEEEeCCh-------------------hHHh
Q 024989 101 KPFKVLLLDEITVDLDVLAR------------ADLLRFLRKECEERGATIIYATHIF-------------------DGLE 149 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~~~------------~~~~~~l~~~~~~~g~tiii~sH~~-------------------~~~~ 149 (259)
.+|+++++|||++.+|+... ..+++.|++++++.|+|||+++|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997532 5678888888888899999999983 2357
Q ss_pred ccCCeEEEEeCCe
Q 024989 150 NWPSHIVYVAHGK 162 (259)
Q Consensus 150 ~~~drv~~l~~G~ 162 (259)
.++|.+++|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999998764
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.32 E-value=8.3e-15 Score=126.67 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=79.2
Q ss_pred CCcEEEEEcCCCCCccccC------------CceEEEEcCeecc----ccEEEecccCCCCccCcHHHHHhc--------
Q 024989 3 EPEMVKVLGRSAFHDTALT------------SSGDLSYLGGEWR----REVAFAGFEVPIQMDVSAEKMIFG-------- 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------------~~G~I~~~G~~~~----~~i~~v~~~~~~~~~lt~~~~~~~-------- 58 (259)
+|++++|+||||||||||. ++|+|.+.|.+.. ..+.+++++..+++..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5799999999999999993 4555555543211 122333444445555555443210
Q ss_pred ---cCCC--CHHHHHHHHH--HcC------------CC--ccccCCcCCHHHHHHHHHHHHH-ccCCcEEEEe----CCC
Q 024989 59 ---VAGI--DPQRRAELIK--VLD------------ID--LSWRMHKVSDGQRRRVQICMGL-LKPFKVLLLD----EIT 112 (259)
Q Consensus 59 ---~~~~--~~~~~~~~l~--~~~------------l~--~~~~~~~LSgG~~qrv~ia~al-~~~p~lllLD----EPt 112 (259)
+.+. ...+...+.. .++ +. .++++.+||| |+ +|+ +.+|++++|| |||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 1122 2222233322 122 11 1345778999 66 677 9999999999 999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 024989 113 VDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 113 ~gLD~~~~~~~~~~l~~~~~~ 133 (259)
++||+.+...+.+.|.++.++
T Consensus 179 ~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp BCCGGGSHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999987653
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.32 E-value=3.8e-16 Score=143.10 Aligned_cols=89 Identities=10% Similarity=0.039 Sum_probs=65.4
Q ss_pred CCcCCHHHHHHHHHHHHHc-cCCcEEEEeC---CC------CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhcc
Q 024989 82 MHKVSDGQRRRVQICMGLL-KPFKVLLLDE---IT------VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW 151 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~-~~p~lllLDE---Pt------~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~ 151 (259)
+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.|.++.++.|.+||+++|. .+.+++
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~ 334 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRY 334 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHH
Confidence 4466778888888888774 6999999999 65 58999999999999988766568999999976 567778
Q ss_pred CCeEEEEeCCeEEEecChhHHH
Q 024989 152 PSHIVYVAHGKLQLAMPMDKVK 173 (259)
Q Consensus 152 ~drv~~l~~G~i~~~g~~~~~~ 173 (259)
|+++.+|++ ++..++++++.
T Consensus 335 ~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 335 NQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHHH--HhcccchhHhh
Confidence 888777754 44455555543
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.29 E-value=5.8e-12 Score=101.41 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=36.1
Q ss_pred HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Q 024989 99 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT-IIYATHI 144 (259)
Q Consensus 99 l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t-iii~sH~ 144 (259)
++.+|++|++|||++ +++..+..+++++.++.. .|++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 467899999999998 666668889999988764 5788 8888885
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.27 E-value=1.4e-13 Score=113.60 Aligned_cols=118 Identities=11% Similarity=0.008 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCCCCcccc-------CCceEEEEcCeeccc------cEEEecccCCCCccCcHHHHHhcc------CCCC
Q 024989 3 EPEMVKVLGRSAFHDTAL-------TSSGDLSYLGGEWRR------EVAFAGFEVPIQMDVSAEKMIFGV------AGID 63 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL-------~~~G~I~~~G~~~~~------~i~~v~~~~~~~~~lt~~~~~~~~------~~~~ 63 (259)
+|++++|+|||||||||| ++.|.|.++|.++.. .++|++|... ...++.+++... .+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~ 85 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF 85 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe
Confidence 689999999999999999 478999999976422 1233333211 123333322110 0000
Q ss_pred HHHHHHHHHHcCCC----ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 64 PQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 64 ~~~~~~~l~~~~l~----~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
..++.++..+++. .+.++..+|+|++|++.++|++..+|+++ +|+...+.+++.+..+.
T Consensus 86 -~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 86 -VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp -EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred -EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 0000000111111 02345689999999999999999999876 68888888887776543
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=6.7e-13 Score=109.01 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=40.4
Q ss_pred ccCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 100 LKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 100 ~~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
+.+|++|+||||++ ++|+..+..+++++.+... .|+++|++||...+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChh
Confidence 34999999999985 9999999999999987654 58999999998754
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.22 E-value=1e-13 Score=124.91 Aligned_cols=57 Identities=19% Similarity=-0.038 Sum_probs=46.7
Q ss_pred CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccC
Q 024989 83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 152 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~ 152 (259)
.+||+||+||+..+++++.+|+++ ||| ..+.+.|++++ .+.+|+++||+.-.+..+.
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGGS
T ss_pred hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHHh
Confidence 379999999999999999999987 999 67888888764 4899999999755555444
No 127
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.5e-11 Score=110.73 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=65.1
Q ss_pred EEEEcCCCCCcccc----------CCceEEEEcCeecc------ccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHH
Q 024989 7 VKVLGRSAFHDTAL----------TSSGDLSYLGGEWR------REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAEL 70 (259)
Q Consensus 7 ~~i~G~sG~GKTtL----------~~~G~I~~~G~~~~------~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~ 70 (259)
+.|.||||+||||| ++.|.+.++|.++. ..++++++...+..... + ..........+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~ 112 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----MGNNDRIVIQEL 112 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h----cCCcchHHHHHH
Confidence 89999999999999 36799988886542 23444544322111100 0 000111123444
Q ss_pred HHHcCCC--ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 71 IKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 71 l~~~~l~--~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
++.+... ..... +||| +..+|+++|+|||++ ||+..+..+++.|.+.. .+.++|++||+.+.+
T Consensus 113 i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 113 LKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI 177 (354)
T ss_dssp HHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred HHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence 4443211 11112 5566 788999999999999 99999999999998753 478999999997643
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.18 E-value=1.6e-11 Score=111.21 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=92.0
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------c--cEEEecccCCCCccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------R--EVAFAGFEVPIQMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~--~i~~v~~~~~~~~~lt~~~~~~-~ 58 (259)
+|++++|+|||||||||| +++|+|.+.|.+.. + .+.+++|....++.+++.+.+. +
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 589999999999999999 38999999998742 1 2457777777777777665442 1
Q ss_pred cC-CCCHHHHHHHHHHcCCCc--cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 59 VA-GIDPQRRAELIKVLDIDL--SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 59 ~~-~~~~~~~~~~l~~~~l~~--~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
.. +.+ .-+++..|... ...+.+|| .+++++..++.+++||.+| +. .+.+.++.+.+..+
T Consensus 208 ~~~~~d----~vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~~------~~~~~~~~~~~~~~ 269 (328)
T 3e70_C 208 KARGID----VVLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA-GN------AIVEQARQFNEAVK 269 (328)
T ss_dssp HHHTCS----EEEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-TT------HHHHHHHHHHHHSC
T ss_pred Hhccch----hhHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-HH------HHHHHHHHHHHhcC
Confidence 00 000 00112222211 11223343 4899999999999999555 43 44555666665569
Q ss_pred cEEEEEeCChh---------HHhccCCeEEEEeCCeEE
Q 024989 136 ATIIYATHIFD---------GLENWPSHIVYVAHGKLQ 164 (259)
Q Consensus 136 ~tiii~sH~~~---------~~~~~~drv~~l~~G~i~ 164 (259)
.|+|++||.-+ .+....-.|.++..|+-+
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 99999999532 233444567777777654
No 129
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=6.1e-13 Score=124.29 Aligned_cols=128 Identities=17% Similarity=0.101 Sum_probs=69.2
Q ss_pred EEEEcCCCCCccccC---------Cce--EEEEcCee--ccccEEEecccCCCCccCcHHHHH-hccCCCCHHHHHHHHH
Q 024989 7 VKVLGRSAFHDTALT---------SSG--DLSYLGGE--WRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK 72 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~---------~~G--~I~~~G~~--~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~l~ 72 (259)
++|+|+||||||||. +.| .+.+.+.. ....+++++|...++..+++.+.. ++...........+.+
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~ 113 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID 113 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHH
Confidence 699999999999993 222 11111111 123466776666665566654432 1111000011112222
Q ss_pred HcCCCccccCCcCCHHHHHHHHHHHHHccCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 73 VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK---VLLLDEIT-VDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 73 ~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~---lllLDEPt-~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
.+. ..++.+++||++||++++.+|+ +|++|||| .+||+... .+++.+. .+.+||++.|..+.
T Consensus 114 ~i~-------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~--~~v~iIlVinK~Dl 179 (418)
T 2qag_C 114 YID-------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH--EKVNIIPLIAKADT 179 (418)
T ss_dssp HHH-------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT--TTSEEEEEEESTTS
T ss_pred HHH-------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh--ccCcEEEEEEcccC
Confidence 221 2566778899999999999999 99999999 69999764 4455543 36788888887653
No 130
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.15 E-value=1.6e-12 Score=115.93 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=69.5
Q ss_pred CCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHH-hc-----------cCC-CCHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG-----------VAG-IDPQRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~~-----------~~~-~~~~~~ 67 (259)
+|.+++|.|+||||||||.. .+...-.|.. ++.+.+++++..+++. +..+.+ ++ ... .+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC-CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHHH
Confidence 57899999999999999952 0000000111 2334555787666543 222222 11 111 234455
Q ss_pred HHHHHHcCCCc----------cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHH
Q 024989 68 AELIKVLDIDL----------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 118 (259)
Q Consensus 68 ~~~l~~~~l~~----------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~ 118 (259)
.+.++.+.-.. ...-..+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 56666653321 1234689999999999984443399999999999999985
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.12 E-value=1.5e-13 Score=113.54 Aligned_cols=117 Identities=11% Similarity=0.008 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCCccccC---------C---ceEEEEcCeec-----------c-ccEE----EecccCCCCccCcHHHHH
Q 024989 5 EMVKVLGRSAFHDTALT---------S---SGDLSYLGGEW-----------R-REVA----FAGFEVPIQMDVSAEKMI 56 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~---------~---~G~I~~~G~~~-----------~-~~i~----~v~~~~~~~~~lt~~~~~ 56 (259)
++++|+|+||||||||. + .|.|.++|.++ + +.++ +++|+..++. . +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i--~--~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI--R--R-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--E--E--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--e--c--
Confidence 68999999999999993 4 89999998652 1 2355 5555443331 0 0
Q ss_pred hccCCCCHH---HHHHHHHH-cCCCcccc-CCcCCHHHHHHHHHHHHHccCCcEE-------EEeCCCC---CCCHHHHH
Q 024989 57 FGVAGIDPQ---RRAELIKV-LDIDLSWR-MHKVSDGQRRRVQICMGLLKPFKVL-------LLDEITV---DLDVLARA 121 (259)
Q Consensus 57 ~~~~~~~~~---~~~~~l~~-~~l~~~~~-~~~LSgG~~qrv~ia~al~~~p~ll-------lLDEPt~---gLD~~~~~ 121 (259)
+ +.+ ...++++. +. ..+.. ...|||||+||++||||++.+|++. +=|.|.. -+|.....
T Consensus 77 ----~-~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~ 150 (171)
T 2f1r_A 77 ----V-SEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVE 150 (171)
T ss_dssp ----C-CHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHH
T ss_pred ----C-ChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHH
Confidence 0 111 23455555 43 22222 2349999999999999999999873 2345432 23445566
Q ss_pred HHHHHHHHHHHh
Q 024989 122 DLLRFLRKECEE 133 (259)
Q Consensus 122 ~~~~~l~~~~~~ 133 (259)
.+.++|.+...+
T Consensus 151 ~~a~~i~~~~~~ 162 (171)
T 2f1r_A 151 RIAEFILSLLRE 162 (171)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 778888776654
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.12 E-value=4.8e-10 Score=95.38 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=47.3
Q ss_pred cCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HhccCCeEEEEeC
Q 024989 101 KPFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAH 160 (259)
Q Consensus 101 ~~p~lllLDEPt~gL--D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~--------~~~~~drv~~l~~ 160 (259)
.+|+++++|+|++.+ |+.....++..+.+++++.|+|||+++|.... ++++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 66555566666666766779999999999876 5678999999975
No 133
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.09 E-value=3.4e-11 Score=110.25 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=64.5
Q ss_pred CCCcEEEEEcCCCCCcccc----------CCceEEEEc-Cee----ccccEEEecccCCCCccCcHHHHHhccCCCCHHH
Q 024989 2 VEPEMVKVLGRSAFHDTAL----------TSSGDLSYL-GGE----WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL----------~~~G~I~~~-G~~----~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
++|++++|+||||+||||| +++|.|.+. |.. ....+++++|...+++..++.++ ++.+.+.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~--~l~~l~~~e 290 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF--GLWHLEPEQ 290 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--CCCCCCHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--hhcCCCHHH
Confidence 4799999999999999999 357999887 632 34568899887766666666653 333444433
Q ss_pred ----HHHHHHHcCCC--ccccCCcCCHHHHHHHHHHHHH
Q 024989 67 ----RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGL 99 (259)
Q Consensus 67 ----~~~~l~~~~l~--~~~~~~~LSgG~~qrv~ia~al 99 (259)
+.++++.+++. .+.++.+|| ||+||++||+++
T Consensus 291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 34567777774 366788999 999999999875
No 134
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.09 E-value=2.6e-11 Score=111.09 Aligned_cols=114 Identities=12% Similarity=0.020 Sum_probs=81.7
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCee------ccccEEEec-ccCCCCccCcHHHHHhccCCCCHHH
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGE------WRREVAFAG-FEVPIQMDVSAEKMIFGVAGIDPQR 66 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~------~~~~i~~v~-~~~~~~~~lt~~~~~~~~~~~~~~~ 66 (259)
+|++++|+|||||||||| +++|.|.+.|.. .++.+++++ |+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~--------------------- 232 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK--------------------- 232 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC-------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccc---------------------
Confidence 689999999999999999 479999998742 122344443 2110
Q ss_pred HHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 67 RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 67 ~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
..++++..++..|+.++..+|+.+++|||.. ...+++|..+. ....|++.++|..+
T Consensus 233 ----------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~~ 288 (361)
T 2gza_A 233 ----------------EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAGS 288 (361)
T ss_dssp ----------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECSS
T ss_pred ----------------cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCCC
Confidence 0113445688899999999999999999986 24566776654 33457899999965
Q ss_pred HHhccCCeEEEEeCCe
Q 024989 147 GLENWPSHIVYVAHGK 162 (259)
Q Consensus 147 ~~~~~~drv~~l~~G~ 162 (259)
+...++|+..+..+.
T Consensus 289 -~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 289 -CELTFERLALMVLQN 303 (361)
T ss_dssp -HHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHhcc
Confidence 778899999988774
No 135
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=108.09 Aligned_cols=137 Identities=10% Similarity=0.106 Sum_probs=86.3
Q ss_pred CCcE--EEEEcCCCCCccccCC--ceEEEEcCee--------ccccEEEecccCCCCccCcHHHHH-hccCCCCH-----
Q 024989 3 EPEM--VKVLGRSAFHDTALTS--SGDLSYLGGE--------WRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDP----- 64 (259)
Q Consensus 3 ~~e~--~~i~G~sG~GKTtL~~--~G~I~~~G~~--------~~~~i~~v~~~~~~~~~lt~~~~~-~~~~~~~~----- 64 (259)
+|++ ++|+||||||||||.. .|. .++|.+ .++.++|++|+..+++.+|+.+++ ++. ..+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~-~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~-~~~~~~~~~ 116 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT-KFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD-QINKEDSYK 116 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS-CC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc-cccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh-ccccchhhh
Confidence 6899 9999999999999941 122 122211 234689999887777777765533 221 1111
Q ss_pred -------HHHHHHHHHc-CCC------ccccC-----------CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHH
Q 024989 65 -------QRRAELIKVL-DID------LSWRM-----------HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 119 (259)
Q Consensus 65 -------~~~~~~l~~~-~l~------~~~~~-----------~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~ 119 (259)
+...+++... ++. .+.++ ..|+-.. +.|+++|..+++++++|+|+..|.+..
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHH
Confidence 1233444443 322 12221 2455555 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 120 RADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 120 ~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
...+.+.+++..+..|.+|+.+|.+
T Consensus 194 ~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 194 LTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999997334579999999875
No 136
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=3.3e-14 Score=131.82 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=98.5
Q ss_pred CCcEEEEEcCCCCCcccc---------------------CCceEEEEcCeec---------cccE---EEecccCCCCcc
Q 024989 3 EPEMVKVLGRSAFHDTAL---------------------TSSGDLSYLGGEW---------RREV---AFAGFEVPIQMD 49 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------------------~~~G~I~~~G~~~---------~~~i---~~v~~~~~~~~~ 49 (259)
+|+.++|+|+||+||||| +++|.+.+.|..+ .+.+ .++.+.+.++..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 578999999999999988 2578888887421 1112 233344444444
Q ss_pred CcHHH-----HHhccCCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCCCHHHHHH
Q 024989 50 VSAEK-----MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARAD 122 (259)
Q Consensus 50 lt~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~ 122 (259)
.+..+ ++..++. ++.++..++...+..+..+|++. +| +++++|||+.++|+.....
T Consensus 99 ~s~~e~L~~~fl~~ir~-----~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k 161 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRA-----VDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEK 161 (392)
T ss_dssp CCSSSSSCHHHHHHHTT-----CSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-----HHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHH
Confidence 43211 1100010 00111112222234555567653 89 9999999999999999999
Q ss_pred HHHHHHHH-HHhcCcEEEEEeCChhHHhccCCeEE-EEeCC-eEEEecCh
Q 024989 123 LLRFLRKE-CEERGATIIYATHIFDGLENWPSHIV-YVAHG-KLQLAMPM 169 (259)
Q Consensus 123 ~~~~l~~~-~~~~g~tiii~sH~~~~~~~~~drv~-~l~~G-~i~~~g~~ 169 (259)
.++.+.+. .+ .|.||+ +|++..+..+|+++. +|.+| +++..++.
T Consensus 162 ~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 162 HLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999887 43 577764 999999999999999 99999 88776654
No 137
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.99 E-value=2.7e-10 Score=101.67 Aligned_cols=131 Identities=9% Similarity=0.139 Sum_probs=81.2
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+|++++|+|+||+||||+. ++| +++.++..+.. ..+..+ ....+.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G----------~~V~lv~~D~~---r~~a~e-----------qL~~~~~~ 159 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH----------KKIAFITTDTY---RIAAVE-----------QLKTYAEL 159 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------CCEEEEECCCS---STTHHH-----------HHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------CEEEEEecCcc---cchHHH-----------HHHHHHHh
Confidence 5889999999999999983 345 24566655431 111111 11222333
Q ss_pred cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---hcCcEEEE-EeCChhHHh
Q 024989 74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE---ERGATIIY-ATHIFDGLE 149 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~---~~g~tiii-~sH~~~~~~ 149 (259)
++++... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+ +.. ..+.++++ +||..+.+.
T Consensus 160 ~gl~~~~---~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~ 230 (296)
T 2px0_A 160 LQAPLEV---CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMK 230 (296)
T ss_dssp TTCCCCB---CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHH
T ss_pred cCCCeEe---cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHH
Confidence 3433111 122 2334555554 4899999999 99999877665555443 322 22334454 499999999
Q ss_pred ccCCeEEEEeCCeEEEe
Q 024989 150 NWPSHIVYVAHGKLQLA 166 (259)
Q Consensus 150 ~~~drv~~l~~G~i~~~ 166 (259)
++|+++..+..+.++.+
T Consensus 231 ~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 231 HIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHTTTTSSSCCCEEEEE
T ss_pred HHHHHHhcCCCCEEEEe
Confidence 99999877777888774
No 138
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.99 E-value=5.6e-10 Score=101.86 Aligned_cols=139 Identities=17% Similarity=0.250 Sum_probs=80.0
Q ss_pred CCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCccc
Q 024989 3 EPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW 80 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 80 (259)
+|+++.|.||+|||||||.-. ..+.-.| ..+.|+..+.... .. ..+.+++..+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~----------------~~----~a~~lG~~~~~ 115 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALD----------------PE----YAKKLGVDTDS 115 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCC----------------HH----HHHHTTCCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcC----------------HH----HHHHcCCCHHH
Confidence 689999999999999999410 0000001 2344543321110 00 12233332211
Q ss_pred -cC-CcCCHHHHHHHHHHHHHccC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhcCcEEEE
Q 024989 81 -RM-HKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDL----------DV---LARADLLRFLRKE---CEERGATIIY 140 (259)
Q Consensus 81 -~~-~~LSgG~~qrv~ia~al~~~--p~lllLDEPt~gL----------D~---~~~~~~~~~l~~~---~~~~g~tiii 140 (259)
.+ ...+. .|-+.++++++.+ |+++|+|||++.+ |+ ...+.+.+.++++ +++.|+|||+
T Consensus 116 l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~ 193 (349)
T 2zr9_A 116 LLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIF 193 (349)
T ss_dssp CEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 11 11232 3456678878654 9999999999998 33 1222344444444 4667999999
Q ss_pred EeCChh----------------HHhccCCeEEEEeCCeEEEec
Q 024989 141 ATHIFD----------------GLENWPSHIVYVAHGKLQLAM 167 (259)
Q Consensus 141 ~sH~~~----------------~~~~~~drv~~l~~G~i~~~g 167 (259)
++|... .+..+||.++.++.++.+..|
T Consensus 194 inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 194 INELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp EEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred EeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 999754 256789999998877655443
No 139
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.96 E-value=7.6e-12 Score=116.78 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=82.4
Q ss_pred CCcEEEEEcCCCCCccccC---CceEEEEcCee---ccccEEEecccCCCCccCcHHHH------HhccCCCCHHHHH--
Q 024989 3 EPEMVKVLGRSAFHDTALT---SSGDLSYLGGE---WRREVAFAGFEVPIQMDVSAEKM------IFGVAGIDPQRRA-- 68 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---~~G~I~~~G~~---~~~~i~~v~~~~~~~~~lt~~~~------~~~~~~~~~~~~~-- 68 (259)
.++.++|+|+||||||||. +.-...+.+.+ ....++++.+... ..+++.+. .....+.......
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 3678999999999999994 22222344432 2334666654320 00111110 0000111111111
Q ss_pred ----HHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe-C
Q 024989 69 ----ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT-H 143 (259)
Q Consensus 69 ----~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s-H 143 (259)
.++..+++. +.++.+||+|++|++.++++|+..|.++++ |.+|+... ..++.+.+..++.|.+++++| |
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSAL 307 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTT
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECC
Confidence 122223333 456788999999999999999999999999 99999876 444555555545577776655 4
Q ss_pred ChhHHhccCC
Q 024989 144 IFDGLENWPS 153 (259)
Q Consensus 144 ~~~~~~~~~d 153 (259)
.-+-+.++++
T Consensus 308 ~g~gi~eL~~ 317 (416)
T 1udx_A 308 TGAGLPALKE 317 (416)
T ss_dssp TCTTHHHHHH
T ss_pred CccCHHHHHH
Confidence 4443443333
No 140
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.96 E-value=8.4e-10 Score=103.79 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=62.7
Q ss_pred CCcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCC--------HHHHHHHHHHHHHHHHhcCcEEEEEeC--------
Q 024989 82 MHKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLD--------VLARADLLRFLRKECEERGATIIYATH-------- 143 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD--------~~~~~~~~~~l~~~~~~~g~tiii~sH-------- 143 (259)
...+|.++.+ ..++.+. ++|+++++|+++...+ ......+.+.|+.++++.|++||+++|
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~ 370 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR 370 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 4578999876 4556665 6899999999998773 344567888888888888999999999
Q ss_pred -C--hh--------HHhccCCeEEEEeCCeE
Q 024989 144 -I--FD--------GLENWPSHIVYVAHGKL 163 (259)
Q Consensus 144 -~--~~--------~~~~~~drv~~l~~G~i 163 (259)
+ +. .+++.||.|++|..++.
T Consensus 371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 22 57788999999987764
No 141
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.94 E-value=4e-10 Score=106.95 Aligned_cols=157 Identities=12% Similarity=0.074 Sum_probs=90.4
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeec--------------cccEEEecccCCCCccCcHHHHHh-c
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW--------------RREVAFAGFEVPIQMDVSAEKMIF-G 58 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~--------------~~~i~~v~~~~~~~~~lt~~~~~~-~ 58 (259)
+|++++|+|+||||||||. ++|+|.+.|.+. ++.++|++|....++.+++.+++. .
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 5899999999999999993 789999987542 234789988766666666655432 1
Q ss_pred c-CCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHc-cCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 024989 59 V-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-KPF-KVLLLDEITVDLDVLARADLLRFLRKECEERG 135 (259)
Q Consensus 59 ~-~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~-~~p-~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g 135 (259)
. .+.+ .-+++..|....+ ..|-.-.+|++.+++++. ..| ++||...|++|.|.. +.++.+.+..|
T Consensus 372 ~~~~~D----vVLIDTaGrl~~~--~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~ 439 (503)
T 2yhs_A 372 KARNID----VLIADTAGRLQNK--SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVG 439 (503)
T ss_dssp HHTTCS----EEEECCCCSCCCH--HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTC
T ss_pred HhcCCC----EEEEeCCCccchh--hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcC
Confidence 1 1111 0011222221110 111123357888898774 446 355555599987654 33444444468
Q ss_pred cEEEEEeCChhHHhccCCeEEEEe--CCeEEEecChhHH
Q 024989 136 ATIIYATHIFDGLENWPSHIVYVA--HGKLQLAMPMDKV 172 (259)
Q Consensus 136 ~tiii~sH~~~~~~~~~drv~~l~--~G~i~~~g~~~~~ 172 (259)
.|.|++|| ++........+.++. +..|.+.|..+.+
T Consensus 440 itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 440 LTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp CSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 99999999 555444333333332 2344444444333
No 142
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.92 E-value=1e-11 Score=115.95 Aligned_cols=104 Identities=10% Similarity=0.032 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeecc------------ccEEEec---------ccCCC--Ccc-
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEWR------------REVAFAG---------FEVPI--QMD- 49 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~~------------~~i~~v~---------~~~~~--~~~- 49 (259)
+|++++|+|||||||||| +++|+|.+.+.++. .++++.+ |++.. +..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 689999999999999999 37899999886531 1233322 44433 122
Q ss_pred ---CcHHHHH-h---c------cCCCCHHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEE
Q 024989 50 ---VSAEKMI-F---G------VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL 108 (259)
Q Consensus 50 ---lt~~~~~-~---~------~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllL 108 (259)
.|+.+.+ + + ++..+.......+..+++.....+.+|||||+|| ||++|+.+|++..-
T Consensus 246 Rd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 246 RDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred CCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 3454432 1 1 1112222333356667776444678999999999 99999999998763
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.88 E-value=8.5e-10 Score=98.95 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+|++++|+|+|||||||+. +.|+|.+.+.+..+. .. .+....+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------------~a-----------~eqL~~~~~~ 157 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------------AA-----------IEQLKIWGER 157 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------------HH-----------HHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------------HH-----------HHHHHHHHHH
Confidence 5789999999999999983 455666655442110 00 0123345556
Q ss_pred cCCCccccCCcCCHHHHHHH---HHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 74 LDIDLSWRMHKVSDGQRRRV---QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv---~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
++++. +..+|+|+.+++ +|++++..+|+++|+|||.. ......+++.+.++
T Consensus 158 ~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 158 VGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred cCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 66542 346789999999 89999999999999999974 23344555555544
No 144
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.86 E-value=2.9e-12 Score=122.56 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=46.1
Q ss_pred CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE--EeCChhHHhccCC
Q 024989 83 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY--ATHIFDGLENWPS 153 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii--~sH~~~~~~~~~d 153 (259)
..+|+||+||++++ ++ | |+||||...+.+++.|.++.. .|.|+++ +||+++++...|+
T Consensus 399 ~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 399 MWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHHHHHHHcC
Confidence 46899999987764 12 7 999999888878887877653 4889985 9999999998874
No 145
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.85 E-value=1.6e-10 Score=104.90 Aligned_cols=125 Identities=10% Similarity=0.066 Sum_probs=81.0
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeec------------cccEEEecccCCCCccCc----------
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW------------RREVAFAGFEVPIQMDVS---------- 51 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~------------~~~i~~v~~~~~~~~~lt---------- 51 (259)
+|++++|+||||||||||. ++|+|.+.|.+. +..+++++|++.+|...+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 6899999999999999993 589999998654 234677777765553211
Q ss_pred --HHH-H--H--h----------c-----------------cCCC-CHHHHH----HHHHHcC---CC-ccc-cCCcCCH
Q 024989 52 --AEK-M--I--F----------G-----------------VAGI-DPQRRA----ELIKVLD---ID-LSW-RMHKVSD 87 (259)
Q Consensus 52 --~~~-~--~--~----------~-----------------~~~~-~~~~~~----~~l~~~~---l~-~~~-~~~~LSg 87 (259)
..+ . + . | +... ..+..+ .+.+... ++ .+. ....+|+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHH
Confidence 000 0 0 0 0 0000 001110 1122222 22 121 2356899
Q ss_pred HHHHHHHHHHHHcc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 88 GQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 88 G~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
|++|++..+++++. .|++++ ||++|+.....+++.|.++.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999987 688876 99999999999999998764
No 146
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.84 E-value=2.2e-10 Score=102.44 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=66.0
Q ss_pred CCCcEEEEEcCCCCCcccc--------CCceEEEE---cCeec-------c-ccEEEecccCCCC-----ccCcHHHH--
Q 024989 2 VEPEMVKVLGRSAFHDTAL--------TSSGDLSY---LGGEW-------R-REVAFAGFEVPIQ-----MDVSAEKM-- 55 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL--------~~~G~I~~---~G~~~-------~-~~i~~v~~~~~~~-----~~lt~~~~-- 55 (259)
++|++++|+|||||||||| +++|+|.+ .|.+. . +.+||++|.+.++ +.+|++++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~~ 242 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLTGEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREVRN 242 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHHSCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGGGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHHHH
Confidence 5789999999999999998 47999999 88643 1 2579998887553 56777544
Q ss_pred Hhc--------cCC-----CCHHHHHHHHHHcCCCc---cccCCcCCHHHHHHHHHHH
Q 024989 56 IFG--------VAG-----IDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICM 97 (259)
Q Consensus 56 ~~~--------~~~-----~~~~~~~~~l~~~~l~~---~~~~~~LSgG~~qrv~ia~ 97 (259)
.+. +.+ ....++.++++.+++.. ++++..|||.+++++.|||
T Consensus 243 ~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 243 YFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 121 11245788999999863 4568899998889999886
No 147
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.81 E-value=1e-08 Score=91.22 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 73 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~ 73 (259)
+|++++|+|+||+||||+. ..|+|.+.+.+..+. ...+ ....+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~-------------~~~~------------ql~~~~~~ 151 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP-------------AARE------------QLRLLGEK 151 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH-------------HHHH------------HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH-------------hHHH------------HHHHhccc
Confidence 5899999999999999993 466776665553221 0000 01122334
Q ss_pred cCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 024989 74 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI-TVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 74 ~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP-t~gLD~~~~~~~~~~l~~~ 130 (259)
.+++.-......+-.+.+|.+|+.+...+++++|+||| +.++|......+.++....
T Consensus 152 ~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 152 VGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 45431100011233345788999998899999999999 9999998888887776643
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.80 E-value=2.7e-11 Score=102.00 Aligned_cols=139 Identities=16% Similarity=0.050 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCCCccccCC--ceEEEEcCeeccccEEEecccCCCCccCcHHHHH-h---ccC-CCCHHHHHHHHHHcC
Q 024989 3 EPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F---GVA-GIDPQRRAELIKVLD 75 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~--~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~-~---~~~-~~~~~~~~~~l~~~~ 75 (259)
+|++++|+||||||||||.. .|...-.| ..+++++++...+......+.. . +.. ..+.....+.+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQG----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTT----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 68999999999999999941 00000000 1244444332221111010100 0 000 112233333443331
Q ss_pred ----C--CccccCCcCCHHHHHHHHHH-HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-
Q 024989 76 ----I--DLSWRMHKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG- 147 (259)
Q Consensus 76 ----l--~~~~~~~~LSgG~~qrv~ia-~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~- 147 (259)
+ ........+|+||+|+++++ ++++.++.++++|||. |..+.+. --.++++++..+.
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~~----~d~~i~vd~~~~~~ 161 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTAI----WDVSIRLEVPMADL 161 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGGT----CSEEEEECCCHHHH
T ss_pred cCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHHh----cCEEEEEeCCHHHH
Confidence 1 11223346799999999887 7777777777788873 1122222 2368888888876
Q ss_pred HhccCCeEEEEeCCe
Q 024989 148 LENWPSHIVYVAHGK 162 (259)
Q Consensus 148 ~~~~~drv~~l~~G~ 162 (259)
+.+++.|. +..|.
T Consensus 162 ~~R~~~R~--~~~g~ 174 (208)
T 3c8u_A 162 EARLVQRW--LDHGL 174 (208)
T ss_dssp HHHHHHHH--HHTTC
T ss_pred HHHHHHHH--HhcCC
Confidence 56666662 34454
No 149
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.78 E-value=7.4e-11 Score=106.58 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=80.0
Q ss_pred cEEEEEcCCCCCccccC-------------CceEEEEcCeec--------cccEEEecccCCCCccCcHHHHHhc---cC
Q 024989 5 EMVKVLGRSAFHDTALT-------------SSGDLSYLGGEW--------RREVAFAGFEVPIQMDVSAEKMIFG---VA 60 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~-------------~~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~~~~~~~---~~ 60 (259)
+.++|+||||+|||||. ++|.+...+.++ ...+.|+.+...++. ++.+.++. ..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~ 129 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF 129 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc
Confidence 78999999999999993 345544444332 235788866544443 45554321 11
Q ss_pred CC--------CHHHHHHHHHHcCCC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 61 GI--------DPQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 61 ~~--------~~~~~~~~l~~~~l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
.. ..+.+...+..+++. ...++..||+|++||+.++ .+||+.....+.++|++.+
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 11 112223334444432 3456789999999998654 7888888899999999877
Q ss_pred HhcCcEEEEEeCChhHHhccCCe
Q 024989 132 EERGATIIYATHIFDGLENWPSH 154 (259)
Q Consensus 132 ~~~g~tiii~sH~~~~~~~~~dr 154 (259)
+..| ++|+.+.+..+|++
T Consensus 194 ~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 194 SLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp HHTT-----CCBCHHHHHHHHHT
T ss_pred HHcC-----CCcCHHHHHHHHHh
Confidence 6555 36888888888775
No 150
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.71 E-value=1.1e-11 Score=104.07 Aligned_cols=57 Identities=7% Similarity=0.016 Sum_probs=41.7
Q ss_pred HHH-HHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeC
Q 024989 95 ICM-GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 160 (259)
Q Consensus 95 ia~-al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~ 160 (259)
.++ +++.+|.+++|||||+++|..+...+.+.|.+..++ +.++|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence 455 677888888899999999998888898888776543 234551 1 56899877653
No 151
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.56 E-value=4.4e-11 Score=105.50 Aligned_cols=116 Identities=14% Similarity=0.011 Sum_probs=69.0
Q ss_pred EEEEcCCCCCccccC-------CceEEEEcCeecc--------ccEEEecccC-CCCccCcHHHHHhccCCCCHHHHHHH
Q 024989 7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWR--------REVAFAGFEV-PIQMDVSAEKMIFGVAGIDPQRRAEL 70 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~--------~~i~~v~~~~-~~~~~lt~~~~~~~~~~~~~~~~~~~ 70 (259)
++|+||||||||||. ..|.|.++|.++. +.++++++.. ..++.+++.+.+..... ... ...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~-~r~-~~~- 123 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP-RRS-DRE- 123 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc-ccC-CCc-
Confidence 899999999999993 4678999886542 2344555442 22233222211110100 000 000
Q ss_pred HHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC------------CCCHHHHHHHHHHH
Q 024989 71 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV------------DLDVLARADLLRFL 127 (259)
Q Consensus 71 l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~------------gLD~~~~~~~~~~l 127 (259)
.....-..++.+.+|||||+||+.|++|+.++|++| |||+. --|...+..+++.+
T Consensus 124 ~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 124 TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp ---CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 000000023456789999999999999999999985 99864 34777777766654
No 152
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.55 E-value=7.7e-10 Score=105.61 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=86.5
Q ss_pred CCcEEEEEcCCCCCccccC-----------CceEEEEcCeeccccEEEeccc--CCCCcc-Cc-HHHHHhccCCC--CHH
Q 024989 3 EPEMVKVLGRSAFHDTALT-----------SSGDLSYLGGEWRREVAFAGFE--VPIQMD-VS-AEKMIFGVAGI--DPQ 65 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~~G~~~~~~i~~v~~~--~~~~~~-lt-~~~~~~~~~~~--~~~ 65 (259)
++..+.|.|++||||||+. +.|++.+.+.|... ..+.... +.+... .+ ..+....+... .-+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~~~L~~~~~Eme 244 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAANALRWCVNEME 244 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHHHHHHHHHHHHH
Confidence 4678999999999999972 45777776665432 1111111 011000 01 11111000000 011
Q ss_pred HHHHHHHHcCCC-c---cc-cCCcCCHHHHHHH----------HHHHHHccCCc-EEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 66 RRAELIKVLDID-L---SW-RMHKVSDGQRRRV----------QICMGLLKPFK-VLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 66 ~~~~~l~~~~l~-~---~~-~~~~LSgG~~qrv----------~ia~al~~~p~-lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
+..+++...++. . +. ....+|+||+|+. .+++++...|. ++++||+++-++.. ...+.+.|.+
T Consensus 245 rR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~ 323 (512)
T 2ius_A 245 RRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIAR 323 (512)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHH
Confidence 223566666653 1 11 1235788887752 35566777898 89999999988733 2334444443
Q ss_pred ---HHHhcCcEEEEEeCChh-------HHhccCCeEEE
Q 024989 130 ---ECEERGATIIYATHIFD-------GLENWPSHIVY 157 (259)
Q Consensus 130 ---~~~~~g~tiii~sH~~~-------~~~~~~drv~~ 157 (259)
..+..|.++|++||..+ ...++.+||.+
T Consensus 324 Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 324 LAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 34455899999999987 45677777766
No 153
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.52 E-value=1.4e-08 Score=82.41 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=40.0
Q ss_pred CCCcEEEEEcCCCCCcccc--------CCceEEEEcCeecccc---EEEecccCCCCccCcHHH
Q 024989 2 VEPEMVKVLGRSAFHDTAL--------TSSGDLSYLGGEWRRE---VAFAGFEVPIQMDVSAEK 54 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL--------~~~G~I~~~G~~~~~~---i~~v~~~~~~~~~lt~~~ 54 (259)
-+||+++|+|||||||||| +++|+|.+.|.++... ..+++|+..+| .+|+.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 3789999999999999998 5899999999765211 12677777777 777644
No 154
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.36 E-value=5.7e-08 Score=80.88 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCccccCC----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcccc
Q 024989 6 MVKVLGRSAFHDTALTS----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR 81 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 81 (259)
+++|+|++||||||+.. -|...+++ ..+.............++.+.+|...
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~~~id~----------------------d~~~~~~~~~~~~~~~~i~~~~g~~~--- 58 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGVPLVDA----------------------DVVAREVVAKDSPLLSKIVEHFGAQI--- 58 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTCCEEEH----------------------HHHHHHTTCSSCHHHHHHHHHHCTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCcccch----------------------HHHHHHHccCChHHHHHHHHHhCHHH---
Confidence 68999999999999842 22222221 11110000001123456666676431
Q ss_pred CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH--hccCCeEEEEe
Q 024989 82 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL--ENWPSHIVYVA 159 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~--~~~~drv~~l~ 159 (259)
-.|.|+.+|..++..+..+|+.+..+ .+.++|..+..+.+.+... .+.++|+.+|.+.+. ...||.+++++
T Consensus 59 --~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 59 --LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp --C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred --hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 13678899999999888888654333 4466777777766665432 256899999998776 67789888874
No 155
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.35 E-value=3.9e-07 Score=91.09 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=59.6
Q ss_pred cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCChhHHhccCCeE
Q 024989 81 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYA-THIFDGLENWPSHI 155 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~-sH~~~~~~~~~drv 155 (259)
.+.-+|.|+.+|..++..++.+++++|+|||.. +||......+++.+..... ...+|++| ||+.+.+.++++..
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 456789999999999999999999999999996 9998777666666655432 35677885 99998888777753
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=3.2e-08 Score=88.14 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=49.3
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEE---cCeecc--------ccEEEecccCCC---------------
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSY---LGGEWR--------REVAFAGFEVPI--------------- 46 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~---~G~~~~--------~~i~~v~~~~~~--------------- 46 (259)
++|++++|+|||||||||| +++|+|.+ .|.+.. +.++|++|.+.+
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~ 246 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 246 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence 4689999999999999999 48999999 776431 247888887642
Q ss_pred -CccCcHHHHH-hc-c-C-CCCHHHHHHHHHHcCCC---ccccCCcCCH
Q 024989 47 -QMDVSAEKMI-FG-V-A-GIDPQRRAELIKVLDID---LSWRMHKVSD 87 (259)
Q Consensus 47 -~~~lt~~~~~-~~-~-~-~~~~~~~~~~l~~~~l~---~~~~~~~LSg 87 (259)
++.+++ +++ +. . + .....++.++++.++|. .++++..||.
T Consensus 247 l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 247 YFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 445554 322 11 1 1 11224578899999985 2456677774
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.34 E-value=2.4e-07 Score=76.25 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=33.8
Q ss_pred HHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024989 91 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 130 (259)
Q Consensus 91 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~ 130 (259)
+.+.+|++++.+|+++++| |+++|+.+..++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4477899999999999999 9999999999999988653
No 158
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.32 E-value=3e-08 Score=88.51 Aligned_cols=100 Identities=9% Similarity=0.038 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCCCCccccC-----------CceEEEE---cCeec----cccEEEecccCCCCccCcHHHHHhccCCCCH
Q 024989 3 EPEMVKVLGRSAFHDTALT-----------SSGDLSY---LGGEW----RREVAFAGFEVPIQMDVSAEKMIFGVAGIDP 64 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----------~~G~I~~---~G~~~----~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~ 64 (259)
+|++++|+||||||||||. ++|+|.+ +|... ++.++++ |...+++.+++.++..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~------- 150 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVK------- 150 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHH-------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHH-------
Confidence 6899999999999999992 5789999 77543 2235555 4444445555543221
Q ss_pred HHHHHHHHHc-C-CC-ccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989 65 QRRAELIKVL-D-ID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 117 (259)
Q Consensus 65 ~~~~~~l~~~-~-l~-~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~ 117 (259)
.+..+ . -. ...+....+.+ +|+..+.+.+.+|+++|+|.|....++
T Consensus 151 -----~~~~l~~~~~~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 151 -----FVSDLKSGVPNVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -----HHHHHTTTCSCEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -----HHHHHhCCCCceeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11111 1 01 11222223322 333333345567899999999998874
No 159
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.31 E-value=3.5e-08 Score=88.45 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=52.4
Q ss_pred CCCcEEEEEcCCCCCcccc---------CCceEEEE---cCeec-------cccEEEecccCCCCc----cCcHHHHH--
Q 024989 2 VEPEMVKVLGRSAFHDTAL---------TSSGDLSY---LGGEW-------RREVAFAGFEVPIQM----DVSAEKMI-- 56 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL---------~~~G~I~~---~G~~~-------~~~i~~v~~~~~~~~----~lt~~~~~-- 56 (259)
.+|++++|+||||+||||| +++|+|.+ .|+.. ...++|++|.+.+.. .++++++.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~e~l~~~ 250 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGYT 250 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHHHGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCHHHHHHH
Confidence 4799999999999999999 37899998 66532 112688988876644 56664441
Q ss_pred hc----------cCC-----CCHHHHHHHHHHcCCCc--cccCCcCCHHHHHH
Q 024989 57 FG----------VAG-----IDPQRRAELIKVLDIDL--SWRMHKVSDGQRRR 92 (259)
Q Consensus 57 ~~----------~~~-----~~~~~~~~~l~~~~l~~--~~~~~~LSgG~~qr 92 (259)
+. +.+ .....+.++++.+++.. .....+|+.|++||
T Consensus 251 f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 251 FPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp SHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 11 011 11235778999998863 34556777788773
No 160
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.30 E-value=2.3e-06 Score=76.73 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=40.4
Q ss_pred HHHHHHHHHHc---cCCcEEEEeCCCCCCCH--------H----HHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 90 RRRVQICMGLL---KPFKVLLLDEITVDLDV--------L----ARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 90 ~qrv~ia~al~---~~p~lllLDEPt~gLD~--------~----~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
.+.+..++.++ .+|+++|+|+.++-... . ....++..|+.++++.|.+||+++|-...
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 35666777777 67999999999875532 1 13456666777777789999999986543
No 161
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.27 E-value=2.8e-06 Score=77.51 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=45.1
Q ss_pred HHHHHHHHc--cCCcEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------
Q 024989 92 RVQICMGLL--KPFKVLLLDEITVDLD----------------VLARADLLRFLRKECEERGATIIYATHIF-------- 145 (259)
Q Consensus 92 rv~ia~al~--~~p~lllLDEPt~gLD----------------~~~~~~~~~~l~~~~~~~g~tiii~sH~~-------- 145 (259)
-+.+++.++ .+|+++++|+-++-.. ......++..|..++++.|.|||++.|-.
T Consensus 127 ~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg 206 (356)
T 3hr8_A 127 ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFG 206 (356)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSC
T ss_pred HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccC
Confidence 344455443 4688888887654443 11223455666677777899999999972
Q ss_pred --------hHHhccCCeEEEEeC
Q 024989 146 --------DGLENWPSHIVYVAH 160 (259)
Q Consensus 146 --------~~~~~~~drv~~l~~ 160 (259)
.-++.++|.++.++.
T Consensus 207 ~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 207 SPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp SCSSCTHHHHHHHHCSEEEEEEE
T ss_pred CcccCCCcchhhhhCcEEEEEEe
Confidence 225678888888875
No 162
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.27 E-value=3e-06 Score=76.66 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=47.0
Q ss_pred HHHHHHHHHc----cCCcEEEEeCCCCCCCHH------------HHHHHHHHHHHHHHhcCcEEEEEeCChhH-------
Q 024989 91 RRVQICMGLL----KPFKVLLLDEITVDLDVL------------ARADLLRFLRKECEERGATIIYATHIFDG------- 147 (259)
Q Consensus 91 qrv~ia~al~----~~p~lllLDEPt~gLD~~------------~~~~~~~~l~~~~~~~g~tiii~sH~~~~------- 147 (259)
+.+..++.++ .+++++++|+.++-.... ....+...|..++++.|.+||+++|....
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~ 283 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 283 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCcccc
Confidence 4444455555 679999999999866432 13456666777777789999999997543
Q ss_pred ------------HhccCCeEEEEeC
Q 024989 148 ------------LENWPSHIVYVAH 160 (259)
Q Consensus 148 ------------~~~~~drv~~l~~ 160 (259)
+...+|-++.|+.
T Consensus 284 ~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 284 QADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp ---------CCTTTTSSSEEEEEEE
T ss_pred CCCCCcCCchHHHHHhCCEEEEEEE
Confidence 3455677777764
No 163
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.23 E-value=1.6e-06 Score=78.57 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH-cCCCc
Q 024989 2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV-LDIDL 78 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~-~~l~~ 78 (259)
.+|+++.|.|++|+|||||... ..+...| ..+.|+.. .++..++. .+++.. .+++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g----~~Vl~fSl------Ems~~ql~-----------~Rlls~~~~v~~ 102 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDD----RGVAVFSL------EMSAEQLA-----------LRALSDLTSINM 102 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----CEEEEEES------SSCHHHHH-----------HHHHHHHHCCCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEeC------CCCHHHHH-----------HHHHHHhhCCCH
Confidence 4799999999999999999410 0000011 23444432 23333322 122211 23332
Q ss_pred c-ccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCC
Q 024989 79 S-WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-GATIIYATHI 144 (259)
Q Consensus 79 ~-~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~-g~tiii~sH~ 144 (259)
. -+-+.||.++.+|+..|...+.+++++|.|+|...++ .+...++++.++. |..+|++-|-
T Consensus 103 ~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 103 HDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHHHhcCCCCEEEEech
Confidence 1 1225899999999999999999999999999975533 5666666666666 7888888653
No 164
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.17 E-value=1.7e-06 Score=78.57 Aligned_cols=64 Identities=6% Similarity=0.123 Sum_probs=50.4
Q ss_pred ccCCcCCHHHHHHHHHHHHHccCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe--CChh
Q 024989 80 WRMHKVSDGQRRRVQICMGLLKPFKVLLLD-EITVDLDVLARADLLRFLRKECEERGATIIYAT--HIFD 146 (259)
Q Consensus 80 ~~~~~LSgG~~qrv~ia~al~~~p~lllLD-EPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~s--H~~~ 146 (259)
.++..+|+|++|++. +.+...++-++++| +|+.++|......++..+.+... +..+|++. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 456789999998876 55555677899999 99999999988888777766532 67888888 8874
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.13 E-value=4.3e-06 Score=79.12 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHccCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHh
Q 024989 87 DGQRRRVQICMGLLKPFKVLLLDEI----------TVDLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE 149 (259)
Q Consensus 87 gG~~qrv~ia~al~~~p~lllLDEP----------t~gLD~~~~~~~~~~l~~~~---~~~g~tiii~sH~~~~~~ 149 (259)
+++++|..+++|....|.+|++||+ +.|.|+...+.+.+++..+- ...+..||.+||..+.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6778889999999999999999999 34677766666666666542 234788999999986543
No 166
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.06 E-value=6.5e-06 Score=74.12 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=39.9
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--hcCcEEEEEeCChhHHhccCCe
Q 024989 101 KPFKVLLLDEITVDLDVLARADLLRFLRKECE--ERGATIIYATHIFDGLENWPSH 154 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~--~~g~tiii~sH~~~~~~~~~dr 154 (259)
.+|.+|++||+... |+.....+..++.++.. ..+.++|++||+.+....+.++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence 56889999999876 88888888888765532 1478999999998765555443
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.03 E-value=6e-06 Score=73.80 Aligned_cols=117 Identities=13% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHH-cCCCc
Q 024989 2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV-LDIDL 78 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~-~~l~~ 78 (259)
.+|+++.|.|++|+|||||... ..+...| ..+.|+..+ ++..++. .+++.. .+++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g----~~vl~~slE------~s~~~l~-----------~R~~~~~~~i~~ 124 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHSLE------MGKKENI-----------KRLIVTAGSINA 124 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT----CEEEEEESS------SCHHHHH-----------HHHHHHHTTCCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEECC------CCHHHHH-----------HHHHHHHcCCCH
Confidence 4799999999999999999410 0000011 234454322 3332221 222221 23321
Q ss_pred c-ccCCc--CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE--EEEEeCC
Q 024989 79 S-WRMHK--VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT--IIYATHI 144 (259)
Q Consensus 79 ~-~~~~~--LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t--iii~sH~ 144 (259)
. -+-+. ||.++++|+..|...+.++++++.|+|...+ ..+...++++.++.|.. +|++-|-
T Consensus 125 ~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 125 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 1 11223 9999999999999999999999999997443 34666666666666777 8888874
No 168
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.00 E-value=8e-07 Score=86.31 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=40.0
Q ss_pred CCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 82 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 82 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
.+.+|+|++|++..++....++.+|+|||... |++..+..+++.|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 36799999999999999999999999999988 899988888888864
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.95 E-value=3.6e-06 Score=69.23 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024989 93 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 131 (259)
Q Consensus 93 v~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~ 131 (259)
...|++++.+|+++++| |+++|+.+...+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
No 170
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.89 E-value=9.6e-09 Score=89.92 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=56.5
Q ss_pred EEEEcCCCCCccccC-------CceEEEEcCeecc--------ccEEEecccCC-CCccCcH-HHH--HhccCCC----C
Q 024989 7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWR--------REVAFAGFEVP-IQMDVSA-EKM--IFGVAGI----D 63 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~--------~~i~~v~~~~~-~~~~lt~-~~~--~~~~~~~----~ 63 (259)
+.|+||||||||||. ..|.|.++|.++. +.+++++|... .++.+++ +++ +...... .
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~ 155 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence 899999999999993 6788888876431 22444444432 2233332 222 1111100 0
Q ss_pred HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 024989 64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 111 (259)
Q Consensus 64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP 111 (259)
.+...+.+. +.+..|||||+||+.+++|+.++|++ +|++
T Consensus 156 ~~~~~~~~~-------~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 156 NDEREQTLN-------QLLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp CHHHHHHHH-------HHHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred chHHHHHHH-------HHHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 011122221 12457899999999999999999987 5654
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.85 E-value=2.5e-06 Score=77.98 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=45.0
Q ss_pred HHHHHHcCCC--c----cccCCcCCHHHHHHHHHH----HHH-ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 024989 68 AELIKVLDID--L----SWRMHKVSDGQRRRVQIC----MGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 133 (259)
Q Consensus 68 ~~~l~~~~l~--~----~~~~~~LSgG~~qrv~ia----~al-~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~ 133 (259)
.++++.+++. . ..++..+|+|++|++.++ +++ ..+|++ +|+|++|..+...+++.|.+....
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 4566666542 1 245667898888888877 555 444554 899999999999999999886543
No 172
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.83 E-value=0.00015 Score=65.96 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHHHHHHc--cCCcEEEEeCCCCCCCHH-------------HH---HHHHHHHHHHHHhcCcEEEEEeCChhH-----
Q 024989 91 RRVQICMGLL--KPFKVLLLDEITVDLDVL-------------AR---ADLLRFLRKECEERGATIIYATHIFDG----- 147 (259)
Q Consensus 91 qrv~ia~al~--~~p~lllLDEPt~gLD~~-------------~~---~~~~~~l~~~~~~~g~tiii~sH~~~~----- 147 (259)
+-+.+++.++ .+++++|+|.+++-.... .. ..++..|..++++.|++||+++|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666664 689999999998866311 11 223333444456779999999996432
Q ss_pred -----------HhccCCeEEEEeCCeEE
Q 024989 148 -----------LENWPSHIVYVAHGKLQ 164 (259)
Q Consensus 148 -----------~~~~~drv~~l~~G~i~ 164 (259)
+..++|-++.++..+..
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeee
Confidence 45578888877765443
No 173
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.83 E-value=2.1e-05 Score=73.54 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=17.1
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|.+++++||+||||||+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4789999999999999984
No 174
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.80 E-value=1.4e-08 Score=87.51 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=56.7
Q ss_pred EEEEcCCCCCccccC-------CceEEEEcCeecc--------ccEEEecccCC-CCccCcH-HHH--HhccCCC----C
Q 024989 7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWR--------REVAFAGFEVP-IQMDVSA-EKM--IFGVAGI----D 63 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~--------~~i~~v~~~~~-~~~~lt~-~~~--~~~~~~~----~ 63 (259)
+.|+||||||||||. ..|.+.+.|.++. +.+++++|... ..+.+++ +++ +...... .
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~ 131 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence 899999999999993 6788888875431 22334444322 2223322 222 1111100 0
Q ss_pred HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 024989 64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 112 (259)
Q Consensus 64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt 112 (259)
.+...+.+. +.+..|||||+||+.+++|+.++|++ +|++.
T Consensus 132 ~~~~~~~~~-------~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 132 NDEREQTLN-------QLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp CHHHHHHHH-------HHHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred chHHHHHHH-------HHHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 011112221 12357899999999999999999987 67764
No 175
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.77 E-value=5.6e-06 Score=68.22 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=33.9
Q ss_pred CCCCcEEEEEcCCCCCccccCC-----ceEEEEcCeec--------cccEEEecccCCCCccCcH
Q 024989 1 MVEPEMVKVLGRSAFHDTALTS-----SGDLSYLGGEW--------RREVAFAGFEVPIQMDVSA 52 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~~-----~G~I~~~G~~~--------~~~i~~v~~~~~~~~~lt~ 52 (259)
|-+|++++|+||||||||||.. ...+.+.+... ...++|++|++..+..+++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence 4589999999999999999931 12566666432 2235677666555544443
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.72 E-value=1e-05 Score=75.69 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=47.5
Q ss_pred cCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEE-EeCCeEEEecCh
Q 024989 101 KPFKVLLLDEITVDLDV-LARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVY-VAHGKLQLAMPM 169 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~-~~~~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~-l~~G~i~~~g~~ 169 (259)
.+|++|++||+..-.+. ..+..++..+..+. +.|+.||++||+. .++..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999876664 67778889888775 4588999999983 434344455443 455666554444
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.68 E-value=1.7e-05 Score=70.94 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCChhHHhccCC
Q 024989 102 PFKVLLLDEITVDLDVLARADLLRFLRKEC--EERGATIIYATHIFDGLENWPS 153 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~--~~~g~tiii~sH~~~~~~~~~d 153 (259)
.|.+|++||+....+......+..+++... ...+.++|++||+.+....+.+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~ 181 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDP 181 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTT
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCH
Confidence 488999999977553211122333332221 2346889999999875554443
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=3.9e-07 Score=83.85 Aligned_cols=111 Identities=11% Similarity=-0.004 Sum_probs=61.1
Q ss_pred CCcEEEEEcCCCCCccccC------CceEEEEcCee---ccccEEEecccCC-CCccCcHHHH-HhccCCCCH----HHH
Q 024989 3 EPEMVKVLGRSAFHDTALT------SSGDLSYLGGE---WRREVAFAGFEVP-IQMDVSAEKM-IFGVAGIDP----QRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~------~~G~I~~~G~~---~~~~i~~v~~~~~-~~~~lt~~~~-~~~~~~~~~----~~~ 67 (259)
+|++++|+||||||||||. .+|.+...... +...+++++|... ++.+.+.... ..+...... ..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~~~~l 247 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNL 247 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchHHHHH
Confidence 6899999999999999994 57777652211 1112444444432 1122211100 000000000 111
Q ss_pred HHHHHH-----cC----------CC---ccccCCcCCHHHHHHHHHHHHHccCCcEEE-EeCCCC
Q 024989 68 AELIKV-----LD----------ID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLL-LDEITV 113 (259)
Q Consensus 68 ~~~l~~-----~~----------l~---~~~~~~~LSgG~~qrv~ia~al~~~p~lll-LDEPt~ 113 (259)
...++- +. +. .+.....+++|++||+..+.+++..|++++ ||+|+.
T Consensus 248 ~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 248 RDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 223320 00 11 234556789999999998888888898887 888876
No 179
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.67 E-value=7.3e-05 Score=66.52 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=44.4
Q ss_pred HHHHHHHc---cCCcEEEEeCCCCCCC--------HH----HHHHHHHHHHHHHHhcCcEEEEEeCChh-----------
Q 024989 93 VQICMGLL---KPFKVLLLDEITVDLD--------VL----ARADLLRFLRKECEERGATIIYATHIFD----------- 146 (259)
Q Consensus 93 v~ia~al~---~~p~lllLDEPt~gLD--------~~----~~~~~~~~l~~~~~~~g~tiii~sH~~~----------- 146 (259)
+..+..++ .+++++|+|.-++-.. .. ....+...|+.++++.|.+||++.|-..
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~ 271 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQ 271 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcC
Confidence 33444444 4689999998775321 11 1245566677777788999999988432
Q ss_pred -----HHhccCCeEEEEeCC
Q 024989 147 -----GLENWPSHIVYVAHG 161 (259)
Q Consensus 147 -----~~~~~~drv~~l~~G 161 (259)
.+...+|.++.|+..
T Consensus 272 ~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 272 AIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp ESSHHHHHHHCSEEEEEEEC
T ss_pred CCCcHHHHhcCcEEEEEEec
Confidence 255567777777643
No 180
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.66 E-value=6.1e-06 Score=78.18 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCCcccc---------CCceEEEEcCeec
Q 024989 3 EPEMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW 33 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~ 33 (259)
+.|+++|+|||||||||| +++|+|.++|.++
T Consensus 28 ~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 28 DELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp CSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 339999999999999999 5899999999753
No 181
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.59 E-value=1.4e-06 Score=74.77 Aligned_cols=29 Identities=7% Similarity=-0.018 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCcccc---------CCceEEEEcCeec
Q 024989 5 EMVKVLGRSAFHDTAL---------TSSGDLSYLGGEW 33 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL---------~~~G~I~~~G~~~ 33 (259)
++++|+|||||||||| +++|.|.++|.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 5678999999999999 5899999988654
No 182
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.48 E-value=0.00058 Score=59.41 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHh---cCcEEEEEeCChh
Q 024989 86 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDV----------LARADLLRFLRKECEE---RGATIIYATHIFD 146 (259)
Q Consensus 86 SgG~~qrv~ia~al~~~p~lllLDEPt~gLD~----------~~~~~~~~~l~~~~~~---~g~tiii~sH~~~ 146 (259)
+++++.+..+..+...+|.+|++||+.+-++. .....++..+...... .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 35777788888888899999999999776543 2223344444432111 2456777888754
No 183
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.47 E-value=0.00013 Score=64.71 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhcCc--EEEEEeCChhHHhccCCeEE
Q 024989 85 VSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLA-RADLLRFLRKECEERGA--TIIYATHIFDGLENWPSHIV 156 (259)
Q Consensus 85 LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~~~-~~~~~~~l~~~~~~~g~--tiii~sH~~~~~~~~~drv~ 156 (259)
+|.|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++.+..|. .+.+|+|+-+.+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 78999998 8999876 66778888887654453 67778888777777777654
No 184
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.46 E-value=3.4e-05 Score=65.18 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=13.9
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|++++|+||||||||||.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6899999999999999995
No 185
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.45 E-value=2.2e-05 Score=64.96 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCccccC-----CceEEEEcCeec
Q 024989 3 EPEMVKVLGRSAFHDTALT-----SSGDLSYLGGEW 33 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----~~G~I~~~G~~~ 33 (259)
+|++++|+||||||||||. .-|.+.++|.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccc
Confidence 5899999999999999994 237777776654
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.45 E-value=2.9e-05 Score=63.28 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=18.4
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
.+|++++|+||||||||||.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 47999999999999999994
No 187
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.29 E-value=4.2e-05 Score=62.62 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=16.5
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
|++++|+||||||||||.
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999994
No 188
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.26 E-value=0.0015 Score=59.53 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCCCccccCCceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCccc-c
Q 024989 3 EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW-R 81 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~ 81 (259)
+|.++.|.|+.|+|||||.-. +..........+.|+..+.... .. ..+.++++.++ .
T Consensus 73 ~G~li~I~G~pGsGKTtlal~--la~~~~~~g~~vlyi~~E~s~~------~~--------------~a~~~g~d~~~l~ 130 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA--IVAQAQKAGGTCAFIDAEHALD------PV--------------YARALGVNTDELL 130 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH--HHHHHHHTTCCEEEEESSCCCC------HH--------------HHHHTTCCGGGCE
T ss_pred CCcEEEEEcCCCCChHHHHHH--HHHHHHHCCCeEEEEECCCChh------HH--------------HHHHcCCCHHHce
Confidence 689999999999999999410 0000000012355553332110 00 12233333211 1
Q ss_pred C-CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---HHhcCcEEEEEe
Q 024989 82 M-HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLD---V----------LARADLLRFLRKE---CEERGATIIYAT 142 (259)
Q Consensus 82 ~-~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD---~----------~~~~~~~~~l~~~---~~~~g~tiii~s 142 (259)
+ ...+ + .+-+.+++.++ .+++++|+|..++=.- . ...+.+.+.++++ +++.+++||+++
T Consensus 131 i~~~~~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 131 VSQPDN-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp EECCSS-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eecCCc-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 1 1112 2 24455666665 5699999999886441 0 1113344444444 567899999999
Q ss_pred CChhH----------------HhccCCeEEEEeCCe
Q 024989 143 HIFDG----------------LENWPSHIVYVAHGK 162 (259)
Q Consensus 143 H~~~~----------------~~~~~drv~~l~~G~ 162 (259)
|-... +...||.++.|+.+.
T Consensus 209 q~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 209 QVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp EC---------------CHHHHHHHCSEEEEEEEES
T ss_pred ecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 86532 355688888877544
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.24 E-value=6.8e-05 Score=63.56 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCccccC-----CceEEEEcCee
Q 024989 3 EPEMVKVLGRSAFHDTALT-----SSGDLSYLGGE 32 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-----~~G~I~~~G~~ 32 (259)
+|++++|+|+||||||||. ..|+|.+.+.+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEP 53 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCeEEEecC
Confidence 6899999999999999994 25667776654
No 190
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.23 E-value=0.0013 Score=61.17 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=71.2
Q ss_pred CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHH-HHcCCCc
Q 024989 2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELI-KVLDIDL 78 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l-~~~~l~~ 78 (259)
-+|+++.|.|++|+|||||... ..+... ....+.|+..+ ++..++ ..+++ ...+++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~slE------~~~~~l-----------~~R~~~~~~~i~~ 257 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSLE------MPAAQL-----------TLRMMCSEARIDM 257 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESS------SCHHHH-----------HHHHHHHHTTCCT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEECC------CCHHHH-----------HHHHHHHHcCCCH
Confidence 4799999999999999999410 000000 00124444222 222221 12222 2334443
Q ss_pred cc-cCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 79 SW-RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 79 ~~-~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+ +-+.||..+.+|+.-|...+.+.++++.|+|.. ++. .+...++++.++.|..+|++-+-
T Consensus 258 ~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~~---~l~~~~~~l~~~~~~~lIvID~l 319 (444)
T 2q6t_A 258 NRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TLM---EVRARARRLVSQNQVGLIIIDYL 319 (444)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BHH---HHHHHHHHHHHHSCCCEEEEECG
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CHH---HHHHHHHHHHHHcCCCEEEEcCh
Confidence 22 235799999999998888888888999998744 332 45556666665568888888763
No 191
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.22 E-value=6.2e-05 Score=60.22 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.8
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-.|++++|+|+||||||||.
T Consensus 1 m~~~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 1 MAEKRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp --CCCCEEEECCTTSCHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 667899999999999999985
No 192
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.20 E-value=8.1e-05 Score=61.12 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCCCcccc
Q 024989 3 EPEMVKVLGRSAFHDTAL 20 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL 20 (259)
+|++++|+||||||||||
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 689999999999999999
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.16 E-value=0.0001 Score=61.41 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=18.2
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
-+|++++|+||||||||||.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 37999999999999999994
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.16 E-value=4.4e-05 Score=75.01 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=32.8
Q ss_pred HccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 99 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 99 l~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
-..++.++++| |+.|+++.... +++.+. +.|..+|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~----~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTER-AWTVAE----RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHH-HHHHHH----HTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHH-HHHHHH----HccCCEEEEecCCchh
Confidence 35678899999 99999987763 333332 3578899999998864
No 195
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.13 E-value=9.8e-05 Score=60.99 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCccccC--------CceEE--EEcCeecc
Q 024989 3 EPEMVKVLGRSAFHDTALT--------SSGDL--SYLGGEWR 34 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~--------~~G~I--~~~G~~~~ 34 (259)
+|++++|+||||||||||. ..|.+ .++|.+++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 6899999999999999994 34766 67765543
No 196
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.08 E-value=9.9e-05 Score=61.14 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCee
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGE 32 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~ 32 (259)
+|++++|+|+||||||||. ..|.|.+.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 5799999999999999994 46777766544
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.08 E-value=0.00076 Score=59.37 Aligned_cols=54 Identities=19% Similarity=0.070 Sum_probs=32.6
Q ss_pred HHHHHccCCcEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 95 ICMGLLKPFKVLLLDEITV-------------DLDVLARADLLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 95 ia~al~~~p~lllLDEPt~-------------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
+..|....|.++++||--+ +........++..+..+....+..||.+|+..+.+
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 4444456799999999632 22233344555555433233467888899987654
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.98 E-value=0.00016 Score=57.96 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCccccCC-----ceEEEEcCee
Q 024989 3 EPEMVKVLGRSAFHDTALTS-----SGDLSYLGGE 32 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~-----~G~I~~~G~~ 32 (259)
+|++++|+|+|||||||+.. -|.+.+++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~ 41 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF 41 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcc
Confidence 58999999999999999952 3666666544
No 199
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.86 E-value=0.00058 Score=57.78 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHccCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCChhHHhccC
Q 024989 86 SDGQRRRVQICMGLLKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYA-THIFDGLENWP 152 (259)
Q Consensus 86 SgG~~qrv~ia~al~~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~-sH~~~~~~~~~ 152 (259)
+.|.-.+.. ...+.+.+++|+||.-. ++|.......++.+..... .-.++++| |...+.+.++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHc
Confidence 456655543 34688999999999976 6887666444444443322 12355555 55544444433
No 200
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.85 E-value=0.00023 Score=58.87 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-+|.+++|+||||||||||.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 678999999999999999984
No 201
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.85 E-value=1.5e-05 Score=75.86 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=56.4
Q ss_pred EEEEcCCCCCccccC-------CceEEEEcCeeccc--------cEEEecccCC-CCccCcH-HHH-Hhcc-CC----CC
Q 024989 7 VKVLGRSAFHDTALT-------SSGDLSYLGGEWRR--------EVAFAGFEVP-IQMDVSA-EKM-IFGV-AG----ID 63 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~~--------~i~~v~~~~~-~~~~lt~-~~~-~~~~-~~----~~ 63 (259)
+.|+||+|+|||||. ..+.+.++|.++.. .+..+++... ..+.+.+ +++ .++. .. ..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~ 146 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 146 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCC
Confidence 899999999999993 57888888865421 2233333322 1222221 121 1111 00 01
Q ss_pred HHHHHHHHHHcCCCccccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 024989 64 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 113 (259)
Q Consensus 64 ~~~~~~~l~~~~l~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~ 113 (259)
.+...+.+.. ....||||++|+..|+.|..++|++ |||+..
T Consensus 147 ~~e~~~~l~~-------LL~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 147 NDEREQTLNQ-------LLVEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp SHHHHHHHHH-------HHHHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred cHHHHHHHHH-------HHHHhcccccCccEEEEEecCChhh--cCcccc
Confidence 1111222211 1235788898999999999999987 898865
No 202
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.84 E-value=0.0072 Score=54.27 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCCCCccccCC----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC
Q 024989 2 VEPEMVKVLGRSAFHDTALTS----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID 77 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~ 77 (259)
.+| ++-|.||+|||||||.- ... -.| ....+.|+..+..+ ++. .++.++++
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~--~~g--~g~~vlyId~E~s~----------------~~~----ra~~lGvd 81 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYM--RQY--PDAVCLFYDSEFGI----------------TPA----YLRSMGVD 81 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHH--HHC--TTCEEEEEESSCCC----------------CHH----HHHHTTCC
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHH--hcC--CCceEEEEeccchh----------------hHH----HHHHhCCC
Confidence 456 89999999999999941 000 000 01124444322111 111 24455654
Q ss_pred ccc-cCCcCCHHHHHHHHHHHHH--c--cCCcEEEEeCCCCCCC-------H--------HHHHHHHHHHH---HHHHhc
Q 024989 78 LSW-RMHKVSDGQRRRVQICMGL--L--KPFKVLLLDEITVDLD-------V--------LARADLLRFLR---KECEER 134 (259)
Q Consensus 78 ~~~-~~~~LSgG~~qrv~ia~al--~--~~p~lllLDEPt~gLD-------~--------~~~~~~~~~l~---~~~~~~ 134 (259)
.+. .+..-.-++++.+.++.++ + .+|+++++|--++=.- + ...+.+-+.|+ .++++.
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~ 161 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK 161 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 322 1112223566667777776 3 4699999997765431 0 12233434443 356778
Q ss_pred CcEEEEEeCChh
Q 024989 135 GATIIYATHIFD 146 (259)
Q Consensus 135 g~tiii~sH~~~ 146 (259)
|+++|++-|-..
T Consensus 162 ~i~vi~tNQV~k 173 (333)
T 3io5_A 162 NIPCIAINHTYE 173 (333)
T ss_dssp TCEEEEEEEC--
T ss_pred CCEEEEECCeee
Confidence 999999999866
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.84 E-value=0.00026 Score=59.18 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=18.3
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
.+|++++|+||||||||||.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 47899999999999999994
No 204
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.81 E-value=0.0021 Score=53.23 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=29.1
Q ss_pred cCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Q 024989 101 KPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGAT-IIYATHI 144 (259)
Q Consensus 101 ~~p~lllLDEPt~gL-D~~~~~~~~~~l~~~~~~~g~t-iii~sH~ 144 (259)
.+|.+|++||.-.-- +......++.++..... .+.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCC
Confidence 578999999965432 23336778888887654 3554 7777774
No 205
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.79 E-value=0.00032 Score=60.28 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|++++|+|||||||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 6899999999999999984
No 206
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.74 E-value=0.00098 Score=66.80 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=33.4
Q ss_pred HHHHHHccCCcEEEEeCCCCCCC----------HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhc
Q 024989 94 QICMGLLKPFKVLLLDEITVDLD----------VLARADLLRFLRKECEERGATIIYATHIFDGLEN 150 (259)
Q Consensus 94 ~ia~al~~~p~lllLDEPt~gLD----------~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~ 150 (259)
.+..+....|.++++||+-..+. ......++.++..+....+..+|.+||+.+.+..
T Consensus 289 vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp HHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred HHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 34444556799999999954432 2222334444433322346788889998765544
No 207
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.74 E-value=0.0027 Score=57.24 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 84 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
+.++.++++..+++..+.+|+++||.-..+..|... ...+.+++.+......+|+++|.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 467788999999999999999888875444555443 34456666554332356666665
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.73 E-value=0.00056 Score=56.05 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
..+.|.||+|+|||||.
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999985
No 209
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.72 E-value=0.00053 Score=61.42 Aligned_cols=31 Identities=6% Similarity=-0.006 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeec
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW 33 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~ 33 (259)
+|++++|+|+||+||||+. +.|+|.+.+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5889999999999999993 567777766553
No 210
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.00038 Score=58.02 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.5
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-++..++|+|||||||||+.
T Consensus 2 m~~~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 2 TAIAPVITIDGPSGAGKGTLC 22 (227)
T ss_dssp -CCSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345679999999999999984
No 211
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.65 E-value=0.00052 Score=60.72 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=31.1
Q ss_pred cCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 101 KPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 101 ~~p~lllLDEPt~-gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
.+|++|++||+-. .-+...+..++..+..... .|..+|++|+.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 4699999999855 3344677888888887654 46667776653
No 212
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.64 E-value=0.007 Score=57.01 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHHHHc--cCCcEEEEeCCCCCCC--------HHHHHHHHHHHHHHHHhcCcEEEEEeCChh---------------
Q 024989 92 RVQICMGLL--KPFKVLLLDEITVDLD--------VLARADLLRFLRKECEERGATIIYATHIFD--------------- 146 (259)
Q Consensus 92 rv~ia~al~--~~p~lllLDEPt~gLD--------~~~~~~~~~~l~~~~~~~g~tiii~sH~~~--------------- 146 (259)
-+..++.+. ++|+++++|=- ..+. ......+...|+.++++.|++||+++|--.
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l-~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECT-TCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccc-hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 334444443 57999999943 3331 133445777888888888999999999542
Q ss_pred -------HHhccCCeEEEEeC
Q 024989 147 -------GLENWPSHIVYVAH 160 (259)
Q Consensus 147 -------~~~~~~drv~~l~~ 160 (259)
.+++.||-|+.|..
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhccchHhhecCcEEEEEEe
Confidence 24566888888853
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.00049 Score=56.66 Aligned_cols=20 Identities=15% Similarity=-0.017 Sum_probs=17.7
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
-+|+.++|+|++||||||+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 46889999999999999985
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.0015 Score=54.83 Aligned_cols=62 Identities=21% Similarity=0.053 Sum_probs=44.0
Q ss_pred HHccCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHhccCCeEEEEe
Q 024989 98 GLLKPFKVLLLDEITV----DLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA 159 (259)
Q Consensus 98 al~~~p~lllLDEPt~----gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~----------~~~~~~drv~~l~ 159 (259)
.-..+|+++++|--+. .-|......+...|..++++.|+++++++|... .++.+||-|+.|.
T Consensus 131 ~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 131 VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 3456899999995432 124555667778888888888999999998642 2456788888775
No 215
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.62 E-value=0.00047 Score=55.58 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.+++|+||||||||||.
T Consensus 26 ~g~~~i~G~NGsGKStll 43 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIG 43 (182)
T ss_dssp SSEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 459999999999999993
No 216
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.62 E-value=0.0016 Score=60.91 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHH-HcCCCc
Q 024989 2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK-VLDIDL 78 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~-~~~l~~ 78 (259)
.+|+++.|.|++|+|||||... -.+...| ..+.|+..+ ++..++ ..+++. ..+++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g----~~vl~fSlE------ms~~ql-----------~~R~~~~~~~i~~ 253 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHSLE------MGKKEN-----------IKRLIVTAGSINA 253 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT----CEEEEECSS------SCTTHH-----------HHHHHHHHSCCCH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC----CEEEEEECC------CCHHHH-----------HHHHHHHHcCCCH
Confidence 4799999999999999999410 0000001 235554332 222221 112221 123321
Q ss_pred cc-cCCc--CCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcE--EEEEeCC
Q 024989 79 SW-RMHK--VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT--IIYATHI 144 (259)
Q Consensus 79 ~~-~~~~--LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~t--iii~sH~ 144 (259)
.+ +-+. |+..+.+|+.-|...+.+.+++|.|+|. +++. .+...++++.++.|.. +|++-+-
T Consensus 254 ~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~L 319 (444)
T 3bgw_A 254 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDYL 319 (444)
T ss_dssp HHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEECS
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEecH
Confidence 11 1123 8888889998888888888899999874 5553 3555566665556777 8888764
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.54 E-value=0.00047 Score=55.60 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=17.8
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-+|.+++|+|++||||||+.
T Consensus 1 m~~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 1 MDVGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp --CEEEEEEECCTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 678999999999999999974
No 218
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0045 Score=53.28 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=34.7
Q ss_pred HHHHHccCCcEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHH
Q 024989 95 ICMGLLKPFKVLLLDEITVD----------LDVLARADLLRFLRKEC---EERGATIIYATHIFDGL 148 (259)
Q Consensus 95 ia~al~~~p~lllLDEPt~g----------LD~~~~~~~~~~l~~~~---~~~g~tiii~sH~~~~~ 148 (259)
+..+....|.+|++||.-.- -+......+..++..+. ...+..||.+|+..+.+
T Consensus 103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 34444567899999997332 25566677777776642 22356788888876543
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.45 E-value=0.003 Score=53.68 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHhccCCeEEEEe
Q 024989 102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI----------FDGLENWPSHIVYVA 159 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~----------~~~~~~~~drv~~l~ 159 (259)
+|+++++||--. |+.. +.+.+..++. .|.+||++-|+ ...+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6653 4445555554 48999999993 355667999999864
No 220
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.45 E-value=0.00073 Score=60.28 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHH---hcCcEEEEEeCChh
Q 024989 102 PFKVLLLDEITVDLDVL-ARADLLRFLRKECE---ERGATIIYATHIFD 146 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~-~~~~~~~~l~~~~~---~~g~tiii~sH~~~ 146 (259)
.|.+|++||.-.-.+.. ....+..++..... ..+..+|++|++.+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 47799999985432221 33445555543211 23678999999874
No 221
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.43 E-value=0.021 Score=61.41 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=72.9
Q ss_pred CCCcEEEEEcCCCCCccccCC----ceEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCC
Q 024989 2 VEPEMVKVLGRSAFHDTALTS----SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID 77 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~----~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~ 77 (259)
.+|.++.|.||+|+|||||.- .+. ..| ..+.|+..+.... .. ..+.++++
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G----~~vlyis~E~s~~------~~--------------~a~~lGvd 434 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REG----KTCAFIDAEHALD------PI--------------YARKLGVD 434 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH--HTT----CCEEEECTTSCCC------HH--------------HHHHTTCC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhC----CCeEEEEccCchH------HH--------------HHHHcCCC
Confidence 378999999999999999941 100 011 2355554332211 00 12233433
Q ss_pred ccc-cC-CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCH-------------HHHHHHHHHHHH---HHHhcCcE
Q 024989 78 LSW-RM-HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDV-------------LARADLLRFLRK---ECEERGAT 137 (259)
Q Consensus 78 ~~~-~~-~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~-------------~~~~~~~~~l~~---~~~~~g~t 137 (259)
.++ .+ ..-+..+ -+.+++.++ .+|+++++|..++-... ...+.+.+.+++ ++++.|++
T Consensus 435 ~~~L~i~~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~ 512 (1706)
T 3cmw_A 435 IDNLLCSQPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 512 (1706)
T ss_dssp GGGCEEECCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHeEEcCCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCE
Confidence 211 11 1113332 234455443 57999999998876641 112233444444 45678999
Q ss_pred EEEEeCChh----------------HHhccCCeEEEEeCC
Q 024989 138 IIYATHIFD----------------GLENWPSHIVYVAHG 161 (259)
Q Consensus 138 iii~sH~~~----------------~~~~~~drv~~l~~G 161 (259)
||+++|-.. .++.+||-++.+...
T Consensus 513 VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~ 552 (1706)
T 3cmw_A 513 LIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 552 (1706)
T ss_dssp EEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred EEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEec
Confidence 999998533 355678887776543
No 222
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.43 E-value=0.00066 Score=56.01 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|++++|+|++|||||||.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5789999999999999995
No 223
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.41 E-value=0.00078 Score=60.47 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=51.9
Q ss_pred EEEEEcCCCCCccccCCceEEEEcCe-eccccEEEecccCCCCccCcHHHH--H--hccC-CCCHHHHHHHHHHcCCCc-
Q 024989 6 MVKVLGRSAFHDTALTSSGDLSYLGG-EWRREVAFAGFEVPIQMDVSAEKM--I--FGVA-GIDPQRRAELIKVLDIDL- 78 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~~G~I~~~G~-~~~~~i~~v~~~~~~~~~lt~~~~--~--~~~~-~~~~~~~~~~l~~~~l~~- 78 (259)
+++|+||||||||||...=. .+.+. .-...+++++++...+......+. . ++.. ..+.+...+.++.+.-..
T Consensus 94 iigI~GpsGSGKSTl~~~L~-~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~ 172 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK-ALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhcccc
Confidence 89999999999999941000 00000 001224445444322221111110 0 1111 123344444444442111
Q ss_pred cccCCcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCH
Q 024989 79 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 117 (259)
Q Consensus 79 ~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~ 117 (259)
.-..-.+|.+..+|+..+...+..|+++|++-|....|+
T Consensus 173 ~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp SEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccccchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 111223444444554333445678999999999876654
No 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.38 E-value=0.014 Score=48.98 Aligned_cols=44 Identities=18% Similarity=-0.001 Sum_probs=30.1
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeC
Q 024989 100 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATH 143 (259)
Q Consensus 100 ~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~-~g~tiii~sH 143 (259)
..+|+++|+..+.+.++......+..++..+... ...+||+.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3478999999998889887766665555433221 1247888888
No 225
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.35 E-value=0.00064 Score=65.38 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCccccC---------Cce-EEE-EcCeec
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSG-DLS-YLGGEW 33 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G-~I~-~~G~~~ 33 (259)
+|++++|+|+||||||||. ++| ++. ++|.++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 6899999999999999993 454 664 666544
No 226
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.34 E-value=0.0081 Score=56.75 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=55.1
Q ss_pred cCCcCCHHHHHHHHHHHHHc--c---------------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 81 RMHKVSDGQRRRVQICMGLL--K---------------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 81 ~~~~LSgG~~qrv~ia~al~--~---------------~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
..+.+||||+|-.-+|.+.+ . .-.+++|||. +-+|....+..++++++ .|.=+|+++=
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~----lglQliiatP 450 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER----LDMQLLIAAP 450 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH----cCCEEEEECc
Confidence 35789999999654443332 1 2358999999 99999999999888874 4788999997
Q ss_pred ChhHHhccCCeEEEEe
Q 024989 144 IFDGLENWPSHIVYVA 159 (259)
Q Consensus 144 ~~~~~~~~~drv~~l~ 159 (259)
+ .+..++|.++.+-
T Consensus 451 ~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E--NISPERGTTYKLV 464 (483)
T ss_dssp S--SCCCSSSEEEECC
T ss_pred c--hhhhccCceEEEE
Confidence 7 6777788887664
No 227
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.31 E-value=0.00094 Score=53.77 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|++++|+|++||||||+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 6899999999999999984
No 228
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.29 E-value=0.013 Score=63.79 Aligned_cols=134 Identities=18% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCcEEEEEcCCCCCccccCCc--eEEEEcCeeccccEEEecccCCCCccCcHHHHHhccCCCCHHHHHHHHHHcCCCcc
Q 024989 2 VEPEMVKVLGRSAFHDTALTSS--GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLS 79 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~~~--G~I~~~G~~~~~~i~~v~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 79 (259)
.+|.++.|.||+|+|||||.-. -.+...| ..+.|+..+.... .. ..+.++++.+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~a~~G----~~vlyis~E~s~~------~~--------------~a~~lGvd~~ 436 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALD------PI--------------YARKLGVDID 436 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTT----CCEEEECTTSCCC------HH--------------HHHHTTCCTT
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEEcCCCHH------HH--------------HHHHcCCCHH
Confidence 3789999999999999999410 0000001 1344543221110 00 1223343321
Q ss_pred c-cC-CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HHhcCcEEE
Q 024989 80 W-RM-HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLD-V------------LARADLLRFLRKE---CEERGATII 139 (259)
Q Consensus 80 ~-~~-~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD-~------------~~~~~~~~~l~~~---~~~~g~tii 139 (259)
+ .+ ...+. .|-+.+++.++ .+|+++++|.-++-.. . ...+.+.+.++.+ +++.|++||
T Consensus 437 ~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VI 514 (2050)
T 3cmu_A 437 NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 514 (2050)
T ss_dssp TCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1 11 12233 33456666554 5799999998876552 1 1223344455554 677899999
Q ss_pred EEeCChhH----------------HhccCCeEEEEeCC
Q 024989 140 YATHIFDG----------------LENWPSHIVYVAHG 161 (259)
Q Consensus 140 i~sH~~~~----------------~~~~~drv~~l~~G 161 (259)
+++|-... ++.++|.++.|+..
T Consensus 515 linQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~ 552 (2050)
T 3cmu_A 515 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 552 (2050)
T ss_dssp EEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred EEeecccccccccCCCcCCCCcchhhhhCCEEEEEEec
Confidence 99986432 56678888887654
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.29 E-value=0.021 Score=61.41 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=44.6
Q ss_pred HHHHHHHHHc--cCCcEEEEeCCCCCCC-H------------HHHHHHHHHHHH---HHHhcCcEEEEEeCChh------
Q 024989 91 RRVQICMGLL--KPFKVLLLDEITVDLD-V------------LARADLLRFLRK---ECEERGATIIYATHIFD------ 146 (259)
Q Consensus 91 qrv~ia~al~--~~p~lllLDEPt~gLD-~------------~~~~~~~~~l~~---~~~~~g~tiii~sH~~~------ 146 (259)
+-...++.++ .+|+++++|+..+-.. . ...+.+.+.+++ ++++.|++||+++|-..
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444444443 6899999999887552 1 122334444444 56778999999999432
Q ss_pred ----------HHhccCCeEEEEeCC
Q 024989 147 ----------GLENWPSHIVYVAHG 161 (259)
Q Consensus 147 ----------~~~~~~drv~~l~~G 161 (259)
.+++.||-++.++++
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~ 901 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRI 901 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEec
Confidence 355667778888543
No 230
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.19 E-value=0.0021 Score=55.54 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHhccCCeEEEEeCC
Q 024989 111 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 161 (259)
Q Consensus 111 Pt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~~~~drv~~l~~G 161 (259)
||++.+..+...+++.+.+...+.+.+..+.+|..+++++.++++...-.+
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 194 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRG 194 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998887655666678899999999988887644333
No 231
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.17 E-value=0.0013 Score=52.16 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCCccccCC
Q 024989 3 EPEMVKVLGRSAFHDTALTS 22 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~ 22 (259)
.+.+.+|+|||||||||+.+
T Consensus 22 ~~g~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLD 41 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999999954
No 232
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.99 E-value=0.0016 Score=60.16 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=16.9
Q ss_pred CCcEEEEEcCCCCCcccc
Q 024989 3 EPEMVKVLGRSAFHDTAL 20 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL 20 (259)
.|++++|+||||||||||
T Consensus 25 ~~~~~~i~G~nG~GKstl 42 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNM 42 (430)
T ss_dssp TCSEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 479999999999999998
No 233
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.91 E-value=0.0022 Score=52.30 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=19.2
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-+|-+++|+|++||||||+.
T Consensus 1 m~~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 1 MSRGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHH
Confidence 668899999999999999984
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.87 E-value=0.0021 Score=51.90 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.6
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-+|.++.|+|++||||||+.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 457889999999999999974
No 235
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.86 E-value=0.0022 Score=51.23 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
.|.++.|+|++||||||+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4678999999999999984
No 236
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.83 E-value=0.0018 Score=53.15 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.+++|+|++||||||+.
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457999999999999985
No 237
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.79 E-value=0.0024 Score=52.19 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=18.3
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|.+|-+++|+|++||||||+.
T Consensus 1 mm~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 1 MKKGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp -CCCEEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHH
Confidence 557889999999999999984
No 238
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.77 E-value=0.025 Score=46.69 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh----------hHHhccCCeEEEEe
Q 024989 102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVA 159 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~----------~~~~~~~drv~~l~ 159 (259)
+.+++++||--. +|+.. .+.++++.. .|+.||++.++. ..+..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 77543 445666554 489999999865 56777899998764
No 239
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.77 E-value=0.0019 Score=55.73 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|+.++|+|++||||||+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4899999999999999984
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.76 E-value=0.002 Score=52.72 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|+|||||||+.
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 6899999999999985
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.71 E-value=0.0024 Score=50.13 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=15.2
Q ss_pred EEEEEcCCCCCccccCC
Q 024989 6 MVKVLGRSAFHDTALTS 22 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~ 22 (259)
+++|+|++||||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999853
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.71 E-value=0.0028 Score=54.23 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCccccC-------CceEEEEcCeecc
Q 024989 3 EPEMVKVLGRSAFHDTALT-------SSGDLSYLGGEWR 34 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-------~~G~I~~~G~~~~ 34 (259)
+|..+.|+|++||||||+. ..|.+.++|..++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 4788999999999999994 2345666665543
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.71 E-value=0.0023 Score=50.53 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|+|++||||||+.
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999985
No 244
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.69 E-value=0.0029 Score=53.59 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=18.6
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|.+|.+++|.|++||||||+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHH
Confidence 347899999999999999984
No 245
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.68 E-value=0.0028 Score=57.00 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.8
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|..+.|.||.|+|||||.
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 5677899999999999995
No 246
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.66 E-value=0.0029 Score=52.48 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=18.0
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-++-+++|+|++||||||+.
T Consensus 1 M~~~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 1 MSLRYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp -CCCEEEEEECCTTSCHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 556789999999999999984
No 247
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.62 E-value=0.0029 Score=51.14 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|.++.|+|++||||||+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 6889999999999999984
No 248
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.61 E-value=0.12 Score=48.07 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.9
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++++|++|+||||+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 3679999999999999984
No 249
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.55 E-value=0.0031 Score=56.53 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=16.8
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
.+.+.+|+||||||||||.
T Consensus 22 ~~~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLL 40 (339)
T ss_dssp CSEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999994
No 250
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.53 E-value=0.0033 Score=51.53 Aligned_cols=21 Identities=5% Similarity=0.012 Sum_probs=18.4
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-+|-+++|+|++||||||+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHH
Confidence 446889999999999999984
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.51 E-value=0.0031 Score=50.65 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=17.4
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
-++..+.|+|++||||||+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999975
No 252
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.50 E-value=0.0033 Score=50.52 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=16.4
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+..+.|+|++||||||+.
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999974
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.48 E-value=0.0036 Score=50.25 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-++.|+|++||||||+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5778999999999999984
No 254
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.47 E-value=0.0034 Score=52.01 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=17.9
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
-+|.+++|+|++||||||+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36889999999999999984
No 255
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.46 E-value=0.0036 Score=56.96 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.9
Q ss_pred CCcEEEEEcCCCCCcccc
Q 024989 3 EPEMVKVLGRSAFHDTAL 20 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL 20 (259)
.+.+++|+||||||||||
T Consensus 25 ~~g~~~i~G~nG~GKttl 42 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNL 42 (359)
T ss_dssp CSEEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCCCChhHH
Confidence 344999999999999998
No 256
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.45 E-value=0.0037 Score=51.91 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCCccccCC
Q 024989 3 EPEMVKVLGRSAFHDTALTS 22 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~ 22 (259)
.+.+.+|+|||||||||+.+
T Consensus 22 ~~~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHH
Confidence 35689999999999999854
No 257
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.39 E-value=0.0037 Score=49.63 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.++.|+|++||||||+.
T Consensus 2 ~~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWA 19 (181)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEecCCCCCHHHHH
Confidence 467999999999999985
No 258
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.37 E-value=0.0038 Score=56.35 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCCccccC---------CceEEEEcCeec
Q 024989 4 PEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW 33 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~ 33 (259)
+.+++|+|++|||||||. ++|+|.+.+.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 789999999999999994 467888777543
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.34 E-value=0.06 Score=45.23 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=27.6
Q ss_pred HHHHHccCCcEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHH---hcCcEEEEEeCChhHH
Q 024989 95 ICMGLLKPFKVLLLDEITVDL-----------DVLARADLLRFLRKECE---ERGATIIYATHIFDGL 148 (259)
Q Consensus 95 ia~al~~~p~lllLDEPt~gL-----------D~~~~~~~~~~l~~~~~---~~g~tiii~sH~~~~~ 148 (259)
+..+....|.+|++||.-.-. +......+..++..+.. ..+..+|.+|+..+.+
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADIL 158 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGG
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhc
Confidence 334445578999999985421 33334445555554321 1245677777766543
No 260
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.34 E-value=0.0046 Score=50.11 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.6
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
.+|..++|+|++||||||+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMA 27 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35789999999999999974
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.32 E-value=0.0043 Score=50.87 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=18.0
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-+|-+++|+|++||||||+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH
Confidence 346889999999999999984
No 262
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.31 E-value=0.0035 Score=50.66 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=18.1
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-++-+++|+|++||||||+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHH
Confidence 346789999999999999974
No 263
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.30 E-value=0.0049 Score=54.05 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCccccC-------CceEEEEcCe
Q 024989 3 EPEMVKVLGRSAFHDTALT-------SSGDLSYLGG 31 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~-------~~G~I~~~G~ 31 (259)
.|..+.|+|||||||||+. ..|.+.+.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence 4678999999999999994 2255666653
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.23 E-value=0.0039 Score=51.46 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=13.8
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
+.|+||||||||||.
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999985
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.22 E-value=0.0042 Score=53.33 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=15.3
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
.+++|+||+|||||||.
T Consensus 2 ~li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47899999999999994
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.20 E-value=0.0063 Score=53.75 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|++++++|++|+||||+.
T Consensus 97 ~~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SSEEEEEECSSCSSTTHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4889999999999999984
No 267
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.17 E-value=0.0058 Score=48.83 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=12.6
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-++.|+|++||||||+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5778999999999999974
No 268
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.15 E-value=0.061 Score=48.26 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.9
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.-+.|.||+|+|||+|.
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457899999999999985
No 269
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.09 E-value=0.0052 Score=49.86 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++.+++|+|++||||||+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCEEEEEEECTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4568999999999999984
No 270
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.07 E-value=0.0053 Score=49.28 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++|+|++||||||+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp -CEEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 5789999999999999985
No 271
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.06 E-value=0.049 Score=59.40 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=46.1
Q ss_pred HHHHHHHHc--cCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCcEEEEEeCCh--------
Q 024989 92 RVQICMGLL--KPFKVLLLDEITVDLDVL----------------ARADLLRFLRKECEERGATIIYATHIF-------- 145 (259)
Q Consensus 92 rv~ia~al~--~~p~lllLDEPt~gLD~~----------------~~~~~~~~l~~~~~~~g~tiii~sH~~-------- 145 (259)
-+.+...+. .+++++++|--++-.-.. ....++..|..++++.|.|||++.|-.
T Consensus 100 ll~il~~L~~~~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~gitVVlTNQv~~~~g~~fg 179 (2050)
T 3cmu_A 100 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 179 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHhccCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEEecccccccccC
Confidence 345555554 479999999876654321 123455556667777899999998862
Q ss_pred --------hHHhccCCeEEEEeC
Q 024989 146 --------DGLENWPSHIVYVAH 160 (259)
Q Consensus 146 --------~~~~~~~drv~~l~~ 160 (259)
..+..+||-++.|..
T Consensus 180 ~~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 180 NPETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEE
T ss_pred cccccCCcchhhhhCcEEEEEEe
Confidence 246678888888854
No 272
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.00 E-value=0.0061 Score=51.37 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|..++|+|++||||||+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5789999999999999974
No 273
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.98 E-value=0.0059 Score=49.74 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=15.4
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
.+++|+|+||||||||.
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 57999999999999994
No 274
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.95 E-value=0.0074 Score=56.12 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=73.5
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeeccccEEEecccCCCCccCcH-HHH--H--hc-cCCCCHHHH
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKM--I--FG-VAGIDPQRR 67 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~~~~i~~v~~~~~~~~~lt~-~~~--~--~~-~~~~~~~~~ 67 (259)
+|++++++|++||||||+. ..|+|.+.+.+..+.... .| +.. .+. + +. ..+.++..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~-~q-------L~~~~~~~gv~v~~~~~~~~p~~i 168 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-EQ-------LRLLGEKVGVPVLEVMDGESPESI 168 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHH-HH-------HHHHHHHHTCCEEECCTTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhH-HH-------HHHhcccCCccEEecCCCCCHHHH
Confidence 5789999999999999993 567777766554221000 00 000 000 0 00 011233222
Q ss_pred -HHHHHHc---CCC---ccccC--CcCCHHHHHHHHHHHHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 024989 68 -AELIKVL---DID---LSWRM--HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 138 (259)
Q Consensus 68 -~~~l~~~---~l~---~~~~~--~~LSgG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~ti 138 (259)
.+.++.+ +.+ .+.++ ..-+.-+.+...+++++..++-++++| ++++.|... .++.+...-+.+-
T Consensus 169 ~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~------~a~~f~~~l~i~G 241 (425)
T 2ffh_A 169 RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALS------VARAFDEKVGVTG 241 (425)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHH------HHHHHHHHTCCCE
T ss_pred HHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHH------HHHHHHhcCCceE
Confidence 3344332 111 13221 112345677777888887677788888 566755432 2333333345566
Q ss_pred EEEeCChh---------HHhccCCeEEEEeCCe
Q 024989 139 IYATHIFD---------GLENWPSHIVYVAHGK 162 (259)
Q Consensus 139 ii~sH~~~---------~~~~~~drv~~l~~G~ 162 (259)
++.|+.-. ......-.|.++..|.
T Consensus 242 VIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge 274 (425)
T 2ffh_A 242 LVLTKLDGDARGGAALSARHVTGKPIYFAGVSE 274 (425)
T ss_dssp EEEESGGGCSSCHHHHHHHHHHCCCEEEEECSS
T ss_pred EEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCC
Confidence 66676311 1222334566666554
No 275
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.93 E-value=0.006 Score=49.42 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|+|++||||||+.
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 6899999999999984
No 276
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.90 E-value=0.0066 Score=51.92 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 116 DVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 116 D~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+|..++.+.+..+++++ .+..+|+...|+.
T Consensus 110 ~~~vr~~l~~~qr~~a~-~~~~~V~~GRd~g 139 (233)
T 3r20_A 110 VPAVRTRLVDIQRKLAT-EGGRVVVEGRDIG 139 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SSSCEEEEESSCC
T ss_pred chHHHHHHHHHHHHHHH-hcCcEEEecccce
Confidence 67778888888888765 3135777777654
No 277
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.87 E-value=0.0092 Score=52.42 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=13.8
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++-+++|.|++||||||+.
T Consensus 4 ~~~iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVK 22 (290)
T ss_dssp TSCEEEEESCC---CCTHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4568999999999999995
No 278
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.73 E-value=0.0068 Score=48.55 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|+|++||||||+.
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999984
No 279
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.71 E-value=0.0078 Score=51.68 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=17.5
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-++-++.|+|++||||||+.
T Consensus 1 M~~~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 1 MGDIMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp --CCEEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEEcCCCCCHHHHH
Confidence 557789999999999999984
No 280
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.63 E-value=0.0096 Score=50.61 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=15.5
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|.+|-+++|.|++||||||+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp -CCCCEEEEECCC---CHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHH
Confidence 568999999999999999984
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.58 E-value=0.0076 Score=48.09 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++||||||+.
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999984
No 282
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.55 E-value=0.0096 Score=49.90 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.7
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
+.|..+.|+||+|+|||||.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHH
T ss_pred ECCEEEEEECCCCCCHHHHH
Confidence 46788999999999999994
No 283
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.55 E-value=0.008 Score=47.83 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|..++|+|++|+|||||.
T Consensus 3 ~~~ki~ivG~~g~GKStLl 21 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLL 21 (172)
T ss_dssp -CEEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999995
No 284
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.53 E-value=0.0084 Score=48.37 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|.|++||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999984
No 285
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.49 E-value=0.0092 Score=57.01 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=18.1
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
++|+.++|+||||+|||||.
T Consensus 106 ~~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36899999999999999994
No 286
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.45 E-value=0.0092 Score=49.82 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=16.5
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
.++-+++|+|++||||||+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp --CCEEEEEECTTSSHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHH
Confidence 45678999999999999974
No 287
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.41 E-value=0.0036 Score=51.40 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|+|++||||||+.
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999994
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.39 E-value=0.0096 Score=48.40 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=15.3
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
.+++|+|++|||||||.
T Consensus 5 ~~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM 21 (169)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 47899999999999984
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.27 E-value=0.012 Score=47.89 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=15.0
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|.|++||||||+.
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999984
No 290
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.24 E-value=0.011 Score=52.98 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCccccC---------CceEEEEcCeec
Q 024989 3 EPEMVKVLGRSAFHDTALT---------SSGDLSYLGGEW 33 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~---------~~G~I~~~G~~~ 33 (259)
++.+++|+|++|+|||||. ..|+|.+.+.+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 5789999999999999993 456666655443
No 291
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.19 E-value=0.011 Score=47.69 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=16.6
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++-+++|+|++||||||+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3568999999999999974
No 292
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.14 E-value=0.012 Score=47.89 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+-+++|+|++||||||+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999974
No 293
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.06 E-value=0.012 Score=46.21 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=15.1
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
-.++|+|++|+|||||.
T Consensus 4 ~~v~lvG~~gvGKStL~ 20 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIF 20 (165)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999995
No 294
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.04 E-value=0.012 Score=47.08 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|+|++||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999984
No 295
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.01 E-value=0.012 Score=47.19 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 4 kv~ivG~~gvGKStLl 19 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLL 19 (184)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 296
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.01 E-value=0.019 Score=54.25 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHccCCcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 95 ICMGLLKPFKVLLLDEIT----------VDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 95 ia~al~~~p~lllLDEPt----------~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
+..|.-..|.+|+|||-- ..+.......++..+.......+..||.+|+..+.
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 334455678999999961 22333444556666654433335566777887654
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.85 E-value=0.014 Score=46.74 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.+++|+|++||||||+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999974
No 298
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.76 E-value=0.018 Score=48.91 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=16.9
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-.++|+|++||||||+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5668999999999999984
No 299
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.76 E-value=0.015 Score=47.89 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999975
No 300
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.72 E-value=0.017 Score=51.71 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=16.9
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++.+++|+||+|||||||.
T Consensus 2 ~~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCcCCHHHHH
Confidence 5678999999999999993
No 301
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.71 E-value=0.024 Score=52.43 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+||+|||||.
T Consensus 182 kvaivG~~gvGKSTLl 197 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLF 197 (439)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999993
No 302
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.70 E-value=0.013 Score=48.64 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.2
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++-++.|+|++||||||+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC 22 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3557899999999999974
No 303
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.67 E-value=0.018 Score=46.92 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=16.6
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
.|-+++|+|+.||||||+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4668999999999999974
No 304
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.63 E-value=0.017 Score=49.07 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+-+++|.|++||||||+.
T Consensus 22 ~~iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVC 39 (252)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 347999999999999984
No 305
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.63 E-value=0.013 Score=46.21 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=15.1
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
.+++|+|++||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999984
No 306
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.56 E-value=0.017 Score=52.29 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=16.3
Q ss_pred CCcEEEEEcCCCCCcccc
Q 024989 3 EPEMVKVLGRSAFHDTAL 20 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL 20 (259)
.+.+.+|+|+|||||||+
T Consensus 24 ~~gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSI 41 (371)
T ss_dssp CSEEEEEEECTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 457899999999999999
No 307
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.55 E-value=0.018 Score=51.92 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=16.8
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++.++.|+||+|||||||.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4568999999999999993
No 308
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.55 E-value=0.016 Score=46.14 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=15.2
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
=.++|+|++|+|||||.
T Consensus 8 ~~i~lvG~~gvGKStL~ 24 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIF 24 (188)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35899999999999995
No 309
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.54 E-value=0.034 Score=50.09 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHH---cc--CCcEEEEeCCC
Q 024989 84 KVSDGQRRRVQICMGL---LK--PFKVLLLDEIT 112 (259)
Q Consensus 84 ~LSgG~~qrv~ia~al---~~--~p~lllLDEPt 112 (259)
.+|+|++||..|+++| .. ++.++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 5899999999999999 66 89999999997
No 310
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.54 E-value=0.02 Score=48.23 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=18.9
Q ss_pred CCCCcEEEEEcCCCCCccccC
Q 024989 1 MVEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 1 ~~~~e~~~i~G~sG~GKTtL~ 21 (259)
|-+|-++.+.|++||||||+.
T Consensus 2 m~~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 557999999999999999984
No 311
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.51 E-value=0.018 Score=45.22 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999974
No 312
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.46 E-value=0.018 Score=47.45 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=14.2
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999974
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.45 E-value=0.019 Score=45.32 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=15.3
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
++++|+|+.||||||+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999974
No 314
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.45 E-value=0.021 Score=47.29 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=16.6
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-++.|+|+.||||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4668999999999999974
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.40 E-value=0.015 Score=46.61 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=14.9
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
-.++|+|++||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999974
No 316
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.28 E-value=0.02 Score=47.22 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|+|++||||||+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999974
No 317
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.25 E-value=0.022 Score=46.49 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=34.9
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHhccCCeEEEEe
Q 024989 101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA 159 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~----------~~~~~~drv~~l~ 159 (259)
.+++++++||--. +++. +.+.|..+..+ |..|+++.++.+ .+..+||.|.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999743 5543 44566666554 899999888554 2334577776553
No 318
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.16 E-value=0.022 Score=49.57 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=15.9
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+-+++|+|++||||||+.
T Consensus 75 ~~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVA 92 (281)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 457999999999999985
No 319
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.14 E-value=0.019 Score=47.06 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=17.5
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
+.|.-+.|.|+||+|||||.
T Consensus 14 v~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELS 33 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHH
Confidence 45778999999999999984
No 320
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.12 E-value=0.023 Score=51.22 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=15.4
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
.+++|+||+|||||||.
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 47999999999999994
No 321
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.10 E-value=0.023 Score=49.29 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.++.|+|++||||||+.
T Consensus 2 ~~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWA 19 (301)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 468999999999999984
No 322
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.08 E-value=0.025 Score=52.15 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++.++.|+|++||||||+.
T Consensus 257 ~~~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp SCCEEEEESCTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 5789999999999999985
No 323
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.76 E-value=0.031 Score=43.95 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=15.9
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+..+.|.||.|+|||||.
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467899999999999985
No 324
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.75 E-value=0.027 Score=46.97 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
+++|+|++||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999974
No 325
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.60 E-value=0.03 Score=50.14 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+..+.|+||+|||||||.
T Consensus 5 ~~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 347999999999999994
No 326
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.58 E-value=0.032 Score=49.78 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+..+.|+||+|||||||.
T Consensus 10 ~~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALA 27 (316)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCccCHHHHH
Confidence 457999999999999994
No 327
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.58 E-value=0.032 Score=47.23 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.4
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.-+.|+||+|+|||||.
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 345889999999999985
No 328
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.58 E-value=0.031 Score=46.77 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++|.|++||||||+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEEcCCCCCHHHHH
Confidence 6889999999999999984
No 329
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.30 E-value=0.038 Score=50.94 Aligned_cols=20 Identities=10% Similarity=-0.065 Sum_probs=18.6
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
.+|+.++|+||+|||||||.
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHH
T ss_pred cCCcEEEEecCCCCChhHHH
Confidence 57999999999999999995
No 330
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.26 E-value=0.036 Score=47.27 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++|.|++||||||+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp CCCEEEEEESTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 6889999999999999984
No 331
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.20 E-value=0.11 Score=43.14 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHHHc--cCCcEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHhccCCeEEEEeCCeE
Q 024989 90 RRRVQICMGLL--KPFKVLLLDEITV--DLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKL 163 (259)
Q Consensus 90 ~qrv~ia~al~--~~p~lllLDEPt~--gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~-~~~~~~~drv~~l~~G~i 163 (259)
+..+..|+..+ .+.+++||||.+. .++......++++|.+ +-....||+++++. +++.++||-|--|+.-+-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vkH 182 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLADTVSELRPVKH 182 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCSEEEECCCSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCcceeeecceeC
Confidence 45566666667 5689999999976 3344444568888874 23468899999886 557778999999977553
No 332
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.11 E-value=0.04 Score=46.21 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-++++.|++||||||+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 6899999999999999984
No 333
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.09 E-value=0.032 Score=49.49 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
+++++++||.- .|....+..+...+.+.. ....+|+++....
T Consensus 110 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~n~~~ 151 (340)
T 1sxj_C 110 GFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH 151 (340)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEeCCC-CCCHHHHHHHHHHHhcCC--CCeEEEEEecCcc
Confidence 57899999974 456677777878776542 3556777777653
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.97 E-value=0.052 Score=45.72 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=17.4
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
-++.++.|+||.||||+|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 36778999999999999974
No 335
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.94 E-value=0.04 Score=46.36 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++|.|+.||||||+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4778999999999999984
No 336
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.83 E-value=0.036 Score=45.62 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=16.3
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++|+|++||||||+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIA 20 (219)
T ss_dssp -CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 5678999999999999974
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.81 E-value=0.038 Score=45.57 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=14.2
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999974
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.80 E-value=0.038 Score=42.39 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 5 ~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 5 KVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999994
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.79 E-value=0.038 Score=44.08 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++|+|||||.
T Consensus 50 ~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLL 65 (193)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999995
No 340
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.70 E-value=0.04 Score=42.27 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.70 E-value=0.039 Score=42.56 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 7 ~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999995
No 342
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.64 E-value=0.039 Score=49.20 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=17.6
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
+.|.-++|+|+||+|||||.
T Consensus 142 ~~g~~vl~~G~sG~GKSt~a 161 (314)
T 1ko7_A 142 VYGVGVLITGDSGIGKSETA 161 (314)
T ss_dssp ETTEEEEEEESTTSSHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHH
Confidence 45888999999999999984
No 343
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.60 E-value=0.051 Score=45.48 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=16.4
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
++-.+.|+|+.||||||+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567999999999999974
No 344
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.59 E-value=0.048 Score=46.55 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=17.1
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++|.|+.||||||+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 5678999999999999984
No 345
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.56 E-value=0.049 Score=44.26 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=32.6
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 024989 101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 147 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~ 147 (259)
.+|.+|++||.-. +|+.....+.+.+.+. ..+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChHh
Confidence 4678999999765 7888877777777542 236788888987653
No 346
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.55 E-value=0.038 Score=42.23 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++++|+.|+|||||.
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3899999999999994
No 347
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.45 E-value=0.043 Score=42.87 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 10 ~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 348
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.38 E-value=0.044 Score=42.07 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++++|+.|+|||||.
T Consensus 6 ~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 349
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.35 E-value=0.044 Score=42.22 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999994
No 350
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.35 E-value=0.046 Score=42.29 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 8 ~i~v~G~~~~GKssli 23 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999995
No 351
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=91.33 E-value=0.0017 Score=61.67 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=54.7
Q ss_pred HHHccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH--hccCCeEEEEeCCeEEEe-cChhHHH
Q 024989 97 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL--ENWPSHIVYVAHGKLQLA-MPMDKVK 173 (259)
Q Consensus 97 ~al~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~--~~~~drv~~l~~G~i~~~-g~~~~~~ 173 (259)
|||..+ ++||+ ||++.+||. +..+.. ++.+..+.++.++||+|+++ .++++++..+..+.++.. ++++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~ 101 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA 101 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence 789999 99999 999999994 433322 34445678899999999998 778899988877777653 5777654
No 352
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.29 E-value=0.046 Score=42.51 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 6 ki~i~G~~~vGKSsl~ 21 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLA 21 (175)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCccHHHHH
Confidence 3789999999999995
No 353
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.28 E-value=0.046 Score=49.64 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=16.6
Q ss_pred CCcE--EEEEcCCCCCccccC
Q 024989 3 EPEM--VKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~--~~i~G~sG~GKTtL~ 21 (259)
+|+. +.|+|++||||||+.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 4666 999999999999994
No 354
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.25 E-value=0.048 Score=45.11 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
|-.+.|+|+.||||||+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 457899999999999974
No 355
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=91.25 E-value=0.022 Score=53.83 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.+.+|+|+||||||||.
T Consensus 60 ~g~n~i~G~NGaGKS~ll 77 (517)
T 4ad8_A 60 GGFCAFTGETGAGKSIIV 77 (517)
T ss_dssp CSEEEEEESHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHH
Confidence 449999999999999994
No 356
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.22 E-value=0.046 Score=42.31 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.9
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 5 i~ivG~~~~GKSsli 19 (169)
T 3q85_A 5 VMLVGESGVGKSTLA 19 (169)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999995
No 357
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.20 E-value=0.036 Score=43.62 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCccccC---CceEE
Q 024989 6 MVKVLGRSAFHDTALT---SSGDL 26 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~---~~G~I 26 (259)
-++|+|++|+|||||. ..|.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc
Confidence 5899999999999994 44544
No 358
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.18 E-value=0.051 Score=50.14 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.+++|+||+|||||||.
T Consensus 2 ~~~i~i~GptgsGKttla 19 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp CEEEEEEECSSSSHHHHH
T ss_pred CcEEEEECcchhhHHHHH
Confidence 457899999999999994
No 359
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.15 E-value=0.048 Score=41.99 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 5 ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999994
No 360
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.15 E-value=0.043 Score=43.12 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.6
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+..+.|.||+|+|||||.
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 456889999999999985
No 361
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.14 E-value=0.049 Score=42.53 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 9 ~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 9 KVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999994
No 362
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.12 E-value=0.045 Score=42.26 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 5 i~~vG~~~~GKSsli 19 (166)
T 3q72_A 5 VLLLGAPGVGKSALA 19 (166)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999995
No 363
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.07 E-value=0.05 Score=42.00 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 5 ~i~v~G~~~~GKssli 20 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.07 E-value=0.046 Score=43.55 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 18 ki~ivG~~~vGKSsL~ 33 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLL 33 (181)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999995
No 365
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.06 E-value=0.099 Score=42.06 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.9
Q ss_pred EEEEEcCCCCCccccCC
Q 024989 6 MVKVLGRSAFHDTALTS 22 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~ 22 (259)
-++|+|++|+|||||..
T Consensus 35 ki~vvG~~~~GKSsli~ 51 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLL 51 (199)
T ss_dssp EEEEECCTTSCCTTTTT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999963
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.02 E-value=0.047 Score=42.19 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=13.9
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 6 i~v~G~~~~GKssli 20 (170)
T 1g16_A 6 ILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 789999999999995
No 367
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.02 E-value=0.078 Score=41.72 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=9.0
Q ss_pred EEEEEcCCCCCccccCC
Q 024989 6 MVKVLGRSAFHDTALTS 22 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~ 22 (259)
-++|+|+.|+|||||..
T Consensus 10 ki~v~G~~~~GKssl~~ 26 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLF 26 (183)
T ss_dssp EEEEECCCCC-------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999963
No 368
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.02 E-value=0.059 Score=45.57 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-+++|.|++||||||+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5889999999999999984
No 369
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.99 E-value=0.051 Score=41.93 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 8 ~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999994
No 370
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.97 E-value=0.053 Score=42.33 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.9
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 12 i~v~G~~~~GKssl~ 26 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLL 26 (181)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999994
No 371
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.98 Score=41.78 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=32.9
Q ss_pred HHHHccCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHH---HHhcCcEEEEEeCChhHHh
Q 024989 96 CMGLLKPFKVLLLDEI----------TVDLDVLARADLLRFLRKE---CEERGATIIYATHIFDGLE 149 (259)
Q Consensus 96 a~al~~~p~lllLDEP----------t~gLD~~~~~~~~~~l~~~---~~~~g~tiii~sH~~~~~~ 149 (259)
..|-...|.++++||- ..+-|....+.+..+|..+ ....|.-||.+|+..+.+.
T Consensus 259 ~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 259 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 3344567999999996 2333444444555555543 2334667888998876543
No 372
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.83 E-value=0.053 Score=41.73 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 3 i~~~G~~~~GKssl~ 17 (164)
T 1r8s_A 3 ILMVGLDAAGKTTIL 17 (164)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999995
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.78 E-value=0.054 Score=41.92 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 9 ~i~v~G~~~~GKssl~ 24 (171)
T 1upt_A 9 RILILGLDGAGKTTIL 24 (171)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999994
No 374
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.76 E-value=0.057 Score=43.24 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 22 ki~ivG~~~vGKSsL~ 37 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALV 37 (184)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 375
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=90.72 E-value=0.064 Score=51.04 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCCCccccCC
Q 024989 3 EPEMVKVLGRSAFHDTALTS 22 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~~ 22 (259)
+|+...+.|+||||||||..
T Consensus 224 ~g~~~~ffGlSGtGKTtLs~ 243 (529)
T 1j3b_A 224 EGDVAVFFGLSGTGKTTLST 243 (529)
T ss_dssp TCCEEEEEECTTSCHHHHTC
T ss_pred CCcEEEEEccccCChhhHhh
Confidence 67899999999999999953
No 376
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.66 E-value=0.054 Score=42.28 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 11 ~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALT 26 (181)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 377
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.61 E-value=0.045 Score=44.40 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=15.0
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
=-++|+|++|+|||||.
T Consensus 26 ~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp EEEEEEEETTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999995
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.59 E-value=0.061 Score=44.05 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|+.|+|||||.
T Consensus 32 ~i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLI 47 (221)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999995
No 379
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.53 E-value=0.059 Score=41.49 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.2
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 8 ~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999994
No 380
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.45 E-value=0.071 Score=44.27 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
|.+++|-|+.||||||+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~ 19 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVI 19 (205)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 579999999999999973
No 381
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.41 E-value=0.061 Score=42.42 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 13 ki~v~G~~~~GKSsli 28 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVL 28 (195)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 382
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.39 E-value=0.057 Score=43.38 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=15.0
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
=-++|+|++|+|||||.
T Consensus 24 ~ki~~vG~~~vGKSsli 40 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLL 40 (190)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999994
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.38 E-value=0.058 Score=42.02 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 16 ~i~v~G~~~~GKssli 31 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLI 31 (179)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999994
No 384
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.36 E-value=0.053 Score=42.94 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 25 ~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLL 40 (195)
T ss_dssp EEEEEEBTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 385
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.32 E-value=0.14 Score=51.19 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=32.8
Q ss_pred HHHHHccCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHh
Q 024989 95 ICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 149 (259)
Q Consensus 95 ia~al~~~p~lllLDEPt~----------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~~~~ 149 (259)
+..|.-+.|-||++||--+ ..+......++..+..+....+..||.+|...+.+.
T Consensus 290 F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 3445556799999999632 122223334555555544445677888888776553
No 386
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.31 E-value=0.064 Score=41.86 Aligned_cols=16 Identities=44% Similarity=0.478 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 8 ki~v~G~~~~GKssl~ 23 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLT 23 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999995
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.23 E-value=0.064 Score=43.38 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 25 ki~vvG~~~vGKSsLi 40 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLA 40 (195)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 388
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.22 E-value=0.086 Score=41.10 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.6
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
.-.++|+|++|+|||||.
T Consensus 8 ~~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346899999999999995
No 389
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.20 E-value=0.056 Score=42.70 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 4 i~v~G~~~~GKSsli 18 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLI 18 (190)
T ss_dssp EEEEEBTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999995
No 390
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=90.14 E-value=0.05 Score=51.75 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|+...+.|+||+|||||.
T Consensus 212 ~g~~~~ffGlSGtGKTTLs 230 (524)
T 1ii2_A 212 QGDVTVFFGLSGTGKTTLS 230 (524)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCcchhhhh
Confidence 5789999999999999995
No 391
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.13 E-value=0.068 Score=42.08 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=13.9
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|+.|+|||||.
T Consensus 7 i~v~G~~~~GKSsli 21 (189)
T 4dsu_A 7 LVVVGADGVGKSALT 21 (189)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999994
No 392
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.12 E-value=0.058 Score=42.98 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|+.|+|||||.
T Consensus 25 ~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 25 EIALAGRSNVGKSSFI 40 (195)
T ss_dssp EEEEEEBTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999995
No 393
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.11 E-value=0.067 Score=42.66 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 27 ki~v~G~~~~GKSsLi 42 (193)
T 2oil_A 27 KVVLIGESGVGKTNLL 42 (193)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3799999999999995
No 394
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.10 E-value=0.077 Score=45.82 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=23.9
Q ss_pred HHHccCC-cEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024989 97 MGLLKPF-KVLLLDEITVDLDVLARADLLRFLRK 129 (259)
Q Consensus 97 ~al~~~p-~lllLDEPt~gLD~~~~~~~~~~l~~ 129 (259)
.++...| .++++||. ..+++..+..+++.|.+
T Consensus 113 ~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 113 EAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 3443333 79999998 67899888888888865
No 395
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.03 E-value=0.069 Score=41.89 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 20 ki~v~G~~~~GKSsli 35 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALT 35 (187)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 396
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.01 E-value=0.069 Score=41.92 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 7 ~i~~~G~~~~GKssl~ 22 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLL 22 (186)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 397
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.00 E-value=0.069 Score=41.75 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 12 ~i~v~G~~~~GKssli 27 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLL 27 (180)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999995
No 398
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.93 E-value=0.074 Score=41.63 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 14 ki~v~G~~~~GKSsli 29 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLV 29 (181)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999994
No 399
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.89 E-value=0.071 Score=42.30 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++++|+.|+|||||.
T Consensus 23 ki~vvG~~~~GKSsli 38 (190)
T 3con_A 23 KLVVVGAGGVGKSALT 38 (190)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999994
No 400
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.88 E-value=0.09 Score=48.81 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.+++|+|++|+||||+.
T Consensus 99 ~~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCCEEEECCSSSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 458999999999999984
No 401
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.86 E-value=0.074 Score=48.13 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCCCcccc
Q 024989 2 VEPEMVKVLGRSAFHDTAL 20 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL 20 (259)
..+..++|+|++|||||||
T Consensus 33 ~~~~~~~i~G~~G~GKs~~ 51 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFT 51 (392)
T ss_dssp BCCCCEEEECCTTSSHHHH
T ss_pred cccCceEEEcCCCCCHHHH
No 402
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.80 E-value=0.073 Score=43.39 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++|+|||||.
T Consensus 14 ~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLL 29 (218)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999995
No 403
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.79 E-value=0.075 Score=42.09 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 9 ki~v~G~~~~GKSsli 24 (208)
T 3clv_A 9 KTVLLGESSVGKSSIV 24 (208)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999994
No 404
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.78 E-value=0.074 Score=41.87 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 20 ki~v~G~~~~GKSsl~ 35 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALT 35 (183)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999994
No 405
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.75 E-value=0.074 Score=42.64 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 16 ki~v~G~~~~GKSsli 31 (206)
T 2bov_A 16 KVIMVGSGGVGKSALT 31 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 406
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.75 E-value=0.076 Score=43.62 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=14.9
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
-.++|+|++|+|||||.
T Consensus 39 ~~i~ivG~~gvGKTtl~ 55 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLI 55 (226)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35889999999999995
No 407
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.72 E-value=0.066 Score=48.33 Aligned_cols=15 Identities=27% Similarity=0.487 Sum_probs=13.8
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 40 I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 40 LMVVGESGLGKSTLI 54 (361)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 689999999999994
No 408
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.66 E-value=0.071 Score=41.99 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 12 ki~v~G~~~~GKSsli 27 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLL 27 (186)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 409
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.64 E-value=0.077 Score=41.27 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 17 ~i~v~G~~~~GKSsli 32 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLL 32 (179)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 410
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.61 E-value=0.072 Score=42.26 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=14.2
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 9 ki~v~G~~~vGKSsli 24 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALL 24 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999994
No 411
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.59 E-value=0.078 Score=41.52 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 10 ki~v~G~~~~GKssl~ 25 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLL 25 (182)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 412
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.54 E-value=0.079 Score=41.94 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 17 i~vvG~~~~GKssL~ 31 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNL 31 (198)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999995
No 413
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.47 E-value=0.078 Score=47.20 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCCCccccC----CceEEEEc
Q 024989 2 VEPEMVKVLGRSAFHDTALT----SSGDLSYL 29 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~----~~G~I~~~ 29 (259)
+.|.-+.|.|+||+||||+. ..|.-.+.
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~~G~~lv~ 176 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLINKNHLFVG 176 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTTTCEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcCCEEEe
Confidence 45778999999999999984 55654443
No 414
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.39 E-value=0.077 Score=41.68 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 8 ki~~~G~~~~GKSsli 23 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLT 23 (181)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999994
No 415
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.37 E-value=0.083 Score=41.76 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 20 ~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTIL 35 (186)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 416
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.21 E-value=0.088 Score=42.18 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=4.1
Q ss_pred EEEEEcCCCCCccccCC
Q 024989 6 MVKVLGRSAFHDTALTS 22 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~ 22 (259)
-++|+|++|+|||||..
T Consensus 22 ~i~v~G~~~~GKssli~ 38 (208)
T 2yc2_C 22 KVAVVGEATVGKSALIS 38 (208)
T ss_dssp EEEEC------------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999964
No 417
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.19 E-value=0.087 Score=41.90 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 24 ki~vvG~~~~GKSsli 39 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFL 39 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999995
No 418
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=89.15 E-value=0.1 Score=49.66 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|....+.|+||+|||||.
T Consensus 240 ~g~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 240 KGDVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCHHHHh
Confidence 5789999999999999994
No 419
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.12 E-value=0.09 Score=41.80 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 22 ki~v~G~~~~GKSsli 37 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLT 37 (189)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999995
No 420
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.10 E-value=0.089 Score=42.24 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=31.0
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 024989 101 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 146 (259)
Q Consensus 101 ~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~~~ 146 (259)
.++.++++||. ..+++.....+...+.+. ..+..+|++|+...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 46889999995 567777777787777653 23567777877654
No 421
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=89.09 E-value=0.087 Score=50.18 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.9
Q ss_pred CC-cEEEEEcCCCCCccccC
Q 024989 3 EP-EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~-e~~~i~G~sG~GKTtL~ 21 (259)
.| +...+.|+||+|||||.
T Consensus 233 ~g~~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 233 EGKNTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp TSCSEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEEecCCCCHHHHh
Confidence 35 78999999999999995
No 422
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.00 E-value=0.093 Score=42.16 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 10 ki~v~G~~~~GKSsli 25 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLM 25 (207)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999994
No 423
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.00 E-value=0.087 Score=42.15 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 25 ki~vvG~~~~GKSsli 40 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIV 40 (192)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3799999999999995
No 424
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.84 E-value=0.095 Score=41.63 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 18 ki~v~G~~~~GKSsli 33 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLL 33 (196)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3799999999999994
No 425
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.80 E-value=0.097 Score=45.35 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++|||||||.
T Consensus 5 kI~lvG~~nvGKSTL~ 20 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLF 20 (272)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999995
No 426
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.77 E-value=0.092 Score=41.78 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 23 ki~v~G~~~~GKSsli 38 (190)
T 2h57_A 23 HVLCLGLDNSGKTTII 38 (190)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 427
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.77 E-value=0.097 Score=41.76 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|+.|+|||||.
T Consensus 24 i~v~G~~~~GKSsli 38 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLL 38 (191)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 789999999999995
No 428
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.71 E-value=0.098 Score=42.02 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 10 ki~v~G~~~~GKSsli 25 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFL 25 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 429
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.71 E-value=0.1 Score=41.54 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 19 ki~v~G~~~~GKSsl~ 34 (199)
T 4bas_A 19 QVVMCGLDNSGKTTII 34 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 430
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.70 E-value=0.098 Score=42.15 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHH---HHHHHHHHHHhcCcEEEEEeCChhHH
Q 024989 102 PFKVLLLDEITVDLDVLARAD---LLRFLRKECEERGATIIYATHIFDGL 148 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~~~~~---~~~~l~~~~~~~g~tiii~sH~~~~~ 148 (259)
+..++++| -| |..+-.. ++..+.+.....+.++|++.|..+..
T Consensus 82 ~~~i~v~d-v~---~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 82 DAYLIVYS-IT---DRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp SEEEEEEE-TT---CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CEEEEEEE-CC---CHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 56788888 23 3444333 33444443323478999999988754
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.66 E-value=0.092 Score=42.81 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 28 ki~lvG~~~vGKSsLi 43 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLV 43 (201)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999995
No 432
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.65 E-value=0.1 Score=40.36 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=26.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
+..+|++||. ..|++..+..+++.|... .....+|.+|+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE--HRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS--SCSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc--CCCEEEEEECC
Confidence 4578999998 478888888888888432 22344555554
No 433
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.65 E-value=0.095 Score=41.74 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 10 ki~vvG~~~~GKSsli 25 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLV 25 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4799999999999994
No 434
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.64 E-value=0.1 Score=41.82 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 30 ki~v~G~~~vGKSsli 45 (196)
T 2atv_A 30 KLAIFGRAGVGKSALV 45 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999995
No 435
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.64 E-value=0.1 Score=41.68 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 23 ki~vvG~~~vGKTsLi 38 (187)
T 3c5c_A 23 NLAILGRRGAGKSALT 38 (187)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3789999999999995
No 436
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.55 E-value=0.1 Score=41.80 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 29 i~vvG~~~~GKSsLi 43 (192)
T 2il1_A 29 VIIIGSRGVGKTSLM 43 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999995
No 437
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.52 E-value=0.096 Score=41.56 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 18 ~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTIL 33 (187)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999995
No 438
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.41 E-value=0.099 Score=41.71 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|+.|+|||||.
T Consensus 26 i~v~G~~~~GKSsli 40 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFL 40 (191)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 789999999999995
No 439
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.38 E-value=0.13 Score=44.82 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=16.3
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
|..+.|.||.|+|||||.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999995
No 440
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.35 E-value=0.1 Score=42.21 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 28 i~v~G~~~~GKSsLi 42 (200)
T 2o52_A 28 FLVIGSAGTGKSCLL 42 (200)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 789999999999995
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.31 E-value=0.11 Score=42.22 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 9 ki~vvG~~~~GKTsli 24 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLF 24 (214)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 442
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.28 E-value=0.08 Score=41.45 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 9 ki~~vG~~~vGKTsli 24 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLI 24 (178)
T ss_dssp EEEEECCGGGCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 443
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.28 E-value=0.11 Score=44.04 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++|+|||||.
T Consensus 24 ~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAG 39 (260)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999995
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.27 E-value=0.12 Score=42.97 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=13.9
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
++.|+||.||||+|..
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999974
No 445
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.22 E-value=0.092 Score=42.97 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=13.8
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
+.|+|++||||||+.
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 689999999999994
No 446
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.18 E-value=0.11 Score=41.43 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 25 ki~~vG~~~~GKSsl~ 40 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLL 40 (194)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999994
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.10 E-value=0.11 Score=41.30 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|+.|+|||||.
T Consensus 25 i~v~G~~~~GKSsli 39 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFV 39 (188)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999995
No 448
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=88.10 E-value=0.12 Score=42.16 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 13 ki~vvG~~~~GKSsli 28 (218)
T 4djt_A 13 KICLIGDGGVGKTTYI 28 (218)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 449
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.09 E-value=0.11 Score=41.82 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 22 ~i~v~G~~~~GKSsli 37 (213)
T 3cph_A 22 KILLIGDSGVGKSCLL 37 (213)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 450
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.09 E-value=0.11 Score=41.56 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 22 ki~~~G~~~~GKssl~ 37 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLV 37 (201)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.07 E-value=0.11 Score=41.81 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 31 ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 31 RILMVGLDAAGKTTIL 46 (192)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999995
No 452
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.04 E-value=0.11 Score=44.65 Aligned_cols=15 Identities=27% Similarity=0.487 Sum_probs=14.1
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 11 I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 11 LMVVGESGLGKSTLI 25 (274)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999994
No 453
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.02 E-value=0.12 Score=40.99 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 17 ~i~v~G~~~~GKssli 32 (195)
T 1x3s_A 17 KILIIGESGVGKSSLL 32 (195)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999994
No 454
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.02 E-value=0.12 Score=41.65 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 30 ki~v~G~~~~GKSsli 45 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFL 45 (199)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999995
No 455
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.00 E-value=0.11 Score=41.93 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 10 ki~v~G~~~~GKSsli 25 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLL 25 (206)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 456
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=87.85 E-value=0.11 Score=41.80 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|+.|+|||||.
T Consensus 27 i~vvG~~~~GKSsli 41 (201)
T 3oes_A 27 VVILGYRCVGKTSLA 41 (201)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 789999999999994
No 457
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=87.80 E-value=0.13 Score=45.15 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
.-+++|+|+.|+|||||.
T Consensus 10 ~g~v~ivG~~nvGKSTLi 27 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLL 27 (308)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 358999999999999994
No 458
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.80 E-value=0.12 Score=42.00 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 27 ki~vvG~~~~GKSsli 42 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLL 42 (207)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4799999999999994
No 459
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.78 E-value=0.12 Score=42.67 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 31 kI~vvG~~~vGKSsLi 46 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFM 46 (228)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999995
No 460
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=87.72 E-value=0.14 Score=48.17 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.5
Q ss_pred CCCcEEEEEcCCCCCccccC
Q 024989 2 VEPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 2 ~~~e~~~i~G~sG~GKTtL~ 21 (259)
.+|+..+|+|+||+|||||.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHH
T ss_pred ccCCEEEEECCCCCCccHHH
Confidence 57999999999999999995
No 461
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=87.70 E-value=0.12 Score=42.30 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 30 ki~vvG~~~vGKSsLi 45 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALL 45 (205)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999994
No 462
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.65 E-value=0.12 Score=43.70 Aligned_cols=58 Identities=16% Similarity=-0.062 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH---ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCChhH
Q 024989 89 QRRRVQICMGL---LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE--RGATIIYATHIFDG 147 (259)
Q Consensus 89 ~~qrv~ia~al---~~~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~--~g~tiii~sH~~~~ 147 (259)
++.+-.+.+++ ..+++++|+--+.+.+.... ..+++.+.+.... .+.++|+++|-.+.
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 44444555555 37888777666556666543 3456666654322 16789999997654
No 463
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=87.62 E-value=0.12 Score=41.56 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 22 ki~~vG~~~vGKTsLi 37 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQ 37 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 464
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.61 E-value=0.12 Score=42.26 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 36 ki~vvG~~~vGKSsli 51 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLL 51 (214)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4889999999999995
No 465
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.48 E-value=0.1 Score=41.23 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 23 ~i~v~G~~~~GKSsli 38 (181)
T 2h17_A 23 KVIIVGLDNAGKTTIL 38 (181)
T ss_dssp EEEEEEETTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999995
No 466
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.47 E-value=0.1 Score=41.40 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 24 ~i~v~G~~~~GKssli 39 (189)
T 2x77_A 24 RVLMLGLDNAGKTSIL 39 (189)
T ss_dssp EEEEEEETTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999994
No 467
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.35 E-value=0.11 Score=41.92 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCccccCC
Q 024989 6 MVKVLGRSAFHDTALTS 22 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~ 22 (259)
-++|+|++|+|||||..
T Consensus 32 ki~v~G~~~~GKSsli~ 48 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLI 48 (204)
Confidence 37899999999999973
No 468
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=87.42 E-value=0.14 Score=44.92 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
.-+++|+|++|+|||||.
T Consensus 7 ~g~V~ivG~~nvGKSTLl 24 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLL 24 (301)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 347999999999999994
No 469
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.40 E-value=0.12 Score=41.61 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 27 ki~vvG~~~~GKSsli 42 (201)
T 2gco_A 27 KLVIVGDGACGKTCLL 42 (201)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 470
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=87.39 E-value=0.13 Score=42.16 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCccccCC
Q 024989 6 MVKVLGRSAFHDTALTS 22 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~~ 22 (259)
-++|+|+.|+|||||..
T Consensus 17 ki~v~G~~~~GKSsli~ 33 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVK 33 (221)
T ss_dssp EEEEEECTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999953
No 471
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.37 E-value=0.14 Score=41.69 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 27 ki~vvG~~~~GKSsLi 42 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFL 42 (217)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3799999999999995
No 472
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.26 E-value=0.13 Score=40.95 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 20 ki~v~G~~~~GKssli 35 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLL 35 (194)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 473
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.23 E-value=0.13 Score=41.75 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 32 ki~vvG~~~~GKSsLi 47 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLL 47 (204)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999995
No 474
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.00 E-value=0.17 Score=44.90 Aligned_cols=18 Identities=17% Similarity=0.015 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+..+.|.||.|+|||||.
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 567999999999999985
No 475
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=86.88 E-value=0.17 Score=49.26 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-++.|+|.+||||||+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlA 69 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVS 69 (630)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 5778999999999999984
No 476
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.80 E-value=0.18 Score=43.52 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=27.7
Q ss_pred CCcEEEEeCCCC--------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024989 102 PFKVLLLDEITV--------DLDVLARADLLRFLRKECEERGATIIYATHI 144 (259)
Q Consensus 102 ~p~lllLDEPt~--------gLD~~~~~~~~~~l~~~~~~~g~tiii~sH~ 144 (259)
++.+|++||--. ..+......+++.+.+. ..+..+|++|+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 578999999752 33677777777777642 235677777754
No 477
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.67 E-value=0.15 Score=43.38 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=15.0
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
..+.|.||+|+|||+|.
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46889999999999985
No 478
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.55 E-value=0.16 Score=44.57 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred EEEEcCCCCCcccc
Q 024989 7 VKVLGRSAFHDTAL 20 (259)
Q Consensus 7 ~~i~G~sG~GKTtL 20 (259)
+.|.||+|+||||+
T Consensus 61 ~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 61 MLFYGPPGTGKTST 74 (353)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
No 479
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.52 E-value=0.16 Score=44.20 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=15.4
Q ss_pred cEEEEEcCCCCCccccC
Q 024989 5 EMVKVLGRSAFHDTALT 21 (259)
Q Consensus 5 e~~~i~G~sG~GKTtL~ 21 (259)
.++.|.||.|+|||||.
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47899999999999995
No 480
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.50 E-value=0.13 Score=39.67 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=28.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 102 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 102 ~p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
+..+|++||. ..+++..+..+++.+.+.. ..+..+|.+|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~-~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAE-RCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHT-TTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCC-CCCEEEEEecC
Confidence 4578999996 4678888888888887642 23455666654
No 481
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.46 E-value=0.15 Score=43.62 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|+.|||||||.
T Consensus 3 kI~lvG~~n~GKSTL~ 18 (256)
T 3iby_A 3 HALLIGNPNCGKTTLF 18 (256)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999994
No 482
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=86.25 E-value=0.17 Score=41.92 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=14.2
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|++|+|||||.
T Consensus 40 VvlvG~~~vGKSSLl 54 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLA 54 (211)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999995
No 483
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.17 E-value=2.2 Score=39.23 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=52.5
Q ss_pred CcCCHHHHHHHHHHHHHc--cCCcEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHhcCcEEEEEeCChh----
Q 024989 83 HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDV----------LARADLLRFLRKECEERGATIIYATHIFD---- 146 (259)
Q Consensus 83 ~~LSgG~~qrv~ia~al~--~~p~lllLDEPt~gLD~----------~~~~~~~~~l~~~~~~~g~tiii~sH~~~---- 146 (259)
..+|..+- .+.++.+. ++|+++++|..+.-... .....+...|+.++++.|++||+++|--.
T Consensus 291 ~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~ 368 (444)
T 2q6t_A 291 PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA 368 (444)
T ss_dssp TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence 45666654 34455554 58999999998754432 22346778888888888999999999321
Q ss_pred ---------------HHhccCCeEEEEeC
Q 024989 147 ---------------GLENWPSHIVYVAH 160 (259)
Q Consensus 147 ---------------~~~~~~drv~~l~~ 160 (259)
.+++.||.|++|..
T Consensus 369 r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 369 RPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp SSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 35677888888853
No 484
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.11 E-value=0.17 Score=43.22 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=14.5
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++|||||||.
T Consensus 7 kI~lvG~~nvGKTsL~ 22 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLF 22 (258)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999995
No 485
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=86.11 E-value=0.17 Score=46.51 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=16.0
Q ss_pred CCcEEEEEcCCCCCcccc
Q 024989 3 EPEMVKVLGRSAFHDTAL 20 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL 20 (259)
.+..++|+|++|+|||||
T Consensus 21 ~~~kvgIVG~pnvGKSTL 38 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTF 38 (396)
T ss_dssp SCCCEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999999
No 486
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.07 E-value=0.19 Score=44.52 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=23.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024989 103 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 143 (259)
Q Consensus 103 p~lllLDEPt~gLD~~~~~~~~~~l~~~~~~~g~tiii~sH 143 (259)
|.+|++||.- .|++.....+.+.+.+. ....+++.|.
T Consensus 190 ~~vl~IDEi~-~l~~~~~~~L~~~le~~---~~~~~ii~t~ 226 (368)
T 3uk6_A 190 PGVLFIDEVH-MLDIESFSFLNRALESD---MAPVLIMATN 226 (368)
T ss_dssp BCEEEEESGG-GSBHHHHHHHHHHTTCT---TCCEEEEEES
T ss_pred CceEEEhhcc-ccChHHHHHHHHHhhCc---CCCeeeeecc
Confidence 6799999975 57777766666655432 1234555554
No 487
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=86.05 E-value=0.16 Score=40.98 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=14.0
Q ss_pred EEEEcCCCCCccccC
Q 024989 7 VKVLGRSAFHDTALT 21 (259)
Q Consensus 7 ~~i~G~sG~GKTtL~ 21 (259)
++|+|+.|+|||||.
T Consensus 32 i~vvG~~~vGKSsli 46 (201)
T 2hup_A 32 LVLVGDASVGKTCVV 46 (201)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 789999999999995
No 488
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=85.94 E-value=0.16 Score=41.01 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 11 ki~i~G~~~~GKTsli 26 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCML 26 (212)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999994
No 489
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.79 E-value=0.19 Score=42.73 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.||||||+.
T Consensus 10 ~~~~~G~pGsGKsT~a 25 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQA 25 (230)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred ceeeECCCCCCHHHHH
Confidence 4799999999999974
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.70 E-value=0.087 Score=44.66 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=14.1
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-+.|.||+|+|||+|.
T Consensus 46 ~vll~G~~GtGKT~la 61 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCBCSSCSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3679999999999985
No 491
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.58 E-value=0.19 Score=43.02 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+..+.|.||+|+|||+|.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 556889999999999985
No 492
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.55 E-value=0.22 Score=47.89 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=16.5
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
+|-++.|+|.+||||||+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA 413 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIA 413 (573)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred cceEEEeecCCCCCHHHHH
Confidence 3568999999999999984
No 493
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.54 E-value=0.23 Score=43.80 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=15.9
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+.-+.|.||.|+|||+|.
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467899999999999995
No 494
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=85.52 E-value=0.083 Score=43.12 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|++|+|||||.
T Consensus 31 ~i~v~G~~~~GKSsli 46 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAI 46 (223)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999995
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.52 E-value=0.23 Score=43.20 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=15.2
Q ss_pred CcEEEEEcCCCCCccccC
Q 024989 4 PEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 4 ~e~~~i~G~sG~GKTtL~ 21 (259)
+-.+.|.||.|+|||+|.
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346788899999999985
No 496
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=85.40 E-value=0.2 Score=41.14 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|+.|+|||||.
T Consensus 15 ki~v~G~~~vGKSsli 30 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLL 30 (223)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3799999999999994
No 497
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=85.39 E-value=0.18 Score=43.36 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
.++|+|+.|||||||.
T Consensus 5 ~I~lvG~~n~GKSTLi 20 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLF 20 (274)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999994
No 498
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=85.31 E-value=0.2 Score=41.05 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCccccC
Q 024989 6 MVKVLGRSAFHDTALT 21 (259)
Q Consensus 6 ~~~i~G~sG~GKTtL~ 21 (259)
-++|+|++|+|||||.
T Consensus 29 ki~vvG~~~vGKSsL~ 44 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAML 44 (214)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3789999999999995
No 499
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.31 E-value=0.21 Score=44.55 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.4
Q ss_pred CCcEEEEEcCCCCCccccC
Q 024989 3 EPEMVKVLGRSAFHDTALT 21 (259)
Q Consensus 3 ~~e~~~i~G~sG~GKTtL~ 21 (259)
.+..+.|.||+|+|||++.
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567899999999999985
No 500
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.28 E-value=0.24 Score=43.54 Aligned_cols=49 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred cCCcEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeC-ChhHHhc
Q 024989 101 KPFKVLLLDEIT-VDLDVLARADLLR-FLRKECEERGATIIYATH-IFDGLEN 150 (259)
Q Consensus 101 ~~p~lllLDEPt-~gLD~~~~~~~~~-~l~~~~~~~g~tiii~sH-~~~~~~~ 150 (259)
.++++|++||.- ..++...+..++. ++..... .++.+|++|+ .++.+..
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~-~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRML-EELPTFFTSNYSFADLER 264 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHH-HTCCEEEEESSCHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHH-CCCcEEEECCCCHHHHHH
Confidence 468999999982 3444444444444 6654323 3456666666 4455444
Done!