BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024990
         (259 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5VYX0|RNLS_HUMAN Renalase OS=Homo sapiens GN=RNLS PE=1 SV=1
          Length = 342

 Score = 38.1 bits (87), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 42/257 (16%)

Query: 4   KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63
            +V   G++SI K    + G E  F   V +    +DK  W VS   G S  QF+ +V +
Sbjct: 104 NFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTG-SPEQFDLIVLT 160

Query: 64  DKNVVSPRFRDVTGRPPPLDLTFAPDLAV--------KLEEIPVNPCFALMLAFSEPLS- 114
                          P P  L    D+          +LE +  +  +AL L +      
Sbjct: 161 --------------MPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGTKI 206

Query: 115 SIPVKGFSFQDSEVLSWAHCDSSKPGRSANSER----WVLHSTADYARTVIAQTGLQKPS 170
            +P  G     +  + +   D+ K  R+  S       V+H+T  +  T +         
Sbjct: 207 DVPWAGQYITSNPCIRFVSIDNKK--RNIESSEIGPSLVIHTTVPFGVTYL--------- 255

Query: 171 EATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRW-GSAFPAASIAKEERCLWDVKRRLAIC 229
           E +++ V E +FQ+ +     +P PI  K  +W  S    A+     +     K  LA  
Sbjct: 256 EHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACG 315

Query: 230 GDFCVSPNVEGAILSGL 246
           GD     N +G I S L
Sbjct: 316 GDGFTQSNFDGCITSAL 332


>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score = 32.7 bits (73), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 85  TFAPDLAVKLEEIP-VNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKP---- 139
           ++  D+ VK   +P    C+      S   S  P+KG  F   +   W HC+ S P    
Sbjct: 402 SYWTDVQVKGTSLPRALHCWDRSFHDSHKASKTPMKGCPFHLVDSCPWPHCNPSCPTIRD 461

Query: 140 ---GRSANSERWVLHSTADYARTVIAQTGLQ 167
              G+  N  ++++H   D  +TV  Q G++
Sbjct: 462 QFTGQEMNVAQFLMHMGFD-VQTVAQQQGME 491


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,174,265
Number of Sequences: 539616
Number of extensions: 4217105
Number of successful extensions: 8369
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8368
Number of HSP's gapped (non-prelim): 4
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)