Query 024990
Match_columns 259
No_of_seqs 120 out of 1045
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 2.2E-44 4.7E-49 293.6 12.9 229 5-256 101-331 (331)
2 TIGR00562 proto_IX_ox protopor 100.0 5E-29 1.1E-33 227.6 19.0 230 5-256 218-460 (462)
3 PLN02576 protoporphyrinogen ox 99.9 8.3E-27 1.8E-31 214.8 18.9 231 5-256 232-487 (496)
4 PRK12416 protoporphyrinogen ox 99.9 2E-26 4.2E-31 210.7 20.1 227 5-256 219-461 (463)
5 PRK11883 protoporphyrinogen ox 99.9 7.6E-25 1.6E-29 199.2 20.5 227 5-254 214-450 (451)
6 TIGR03467 HpnE squalene-associ 99.9 2.4E-22 5.2E-27 180.9 21.7 218 5-254 189-419 (419)
7 COG1232 HemY Protoporphyrinoge 99.9 1.1E-22 2.4E-27 181.7 17.4 227 4-254 207-444 (444)
8 PLN02268 probable polyamine ox 99.9 8.2E-22 1.8E-26 178.8 21.4 227 5-256 194-434 (435)
9 PLN02328 lysine-specific histo 99.9 1.2E-21 2.6E-26 185.9 20.3 229 3-257 428-680 (808)
10 PLN02529 lysine-specific histo 99.9 1.5E-21 3.4E-26 184.3 19.7 228 3-257 348-599 (738)
11 PLN03000 amine oxidase 99.9 6.3E-21 1.4E-25 181.2 20.8 230 4-259 373-626 (881)
12 PRK07233 hypothetical protein; 99.9 6.8E-20 1.5E-24 165.8 19.8 228 4-257 190-432 (434)
13 PF01593 Amino_oxidase: Flavin 99.9 1.8E-20 3.8E-25 168.1 15.7 223 8-253 208-450 (450)
14 PLN02976 amine oxidase 99.8 2.5E-19 5.3E-24 175.3 22.1 232 3-257 927-1187(1713)
15 PLN02676 polyamine oxidase 99.8 5E-19 1.1E-23 162.4 21.1 227 8-257 220-474 (487)
16 COG1231 Monoamine oxidase [Ami 99.8 2.3E-19 5E-24 157.6 17.2 229 6-257 203-448 (450)
17 PLN02568 polyamine oxidase 99.8 3.3E-18 7.2E-23 158.3 20.7 236 4-259 234-538 (539)
18 PLN02612 phytoene desaturase 99.8 7.6E-18 1.7E-22 157.2 19.7 223 12-258 308-550 (567)
19 KOG1276 Protoporphyrinogen oxi 99.8 2E-18 4.3E-23 149.8 12.7 229 5-253 242-490 (491)
20 TIGR02732 zeta_caro_desat caro 99.8 1E-17 2.2E-22 153.4 16.1 217 12-253 223-474 (474)
21 TIGR02731 phytoene_desat phyto 99.8 1E-16 2.2E-21 146.2 19.9 218 11-252 212-452 (453)
22 PLN02487 zeta-carotene desatur 99.7 2.9E-16 6.3E-21 145.7 18.6 230 5-257 287-554 (569)
23 PRK07208 hypothetical protein; 99.7 2.8E-16 6E-21 144.4 16.2 229 6-255 212-460 (479)
24 TIGR02733 desat_CrtD C-3',4' d 99.5 9.2E-12 2E-16 114.9 22.5 231 5-255 225-491 (492)
25 KOG0029 Amine oxidase [Seconda 99.5 1.9E-12 4.1E-17 118.5 17.7 228 4-257 211-460 (501)
26 KOG0685 Flavin-containing amin 99.4 1.4E-11 3.1E-16 109.0 13.3 231 6-256 217-491 (498)
27 TIGR02734 crtI_fam phytoene de 99.3 2.2E-10 4.7E-15 106.1 20.0 233 4-257 211-493 (502)
28 TIGR02730 carot_isom carotene 99.2 3.3E-09 7.1E-14 98.1 22.1 238 5-256 222-492 (493)
29 COG2907 Predicted NAD/FAD-bind 99.1 3.4E-11 7.3E-16 102.7 4.3 93 5-110 213-305 (447)
30 COG1233 Phytoene dehydrogenase 98.2 2.8E-05 6E-10 71.9 13.5 58 4-63 216-276 (487)
31 TIGR01984 UbiH 2-polyprenyl-6- 97.9 0.0032 6.8E-08 56.1 19.6 49 12-63 105-157 (382)
32 KOG4254 Phytoene desaturase [C 97.8 0.0012 2.7E-08 59.0 15.0 68 6-78 258-329 (561)
33 PRK09126 hypothetical protein; 97.6 0.011 2.5E-07 52.8 18.5 48 14-64 116-163 (392)
34 PRK07494 2-octaprenyl-6-methox 97.5 0.012 2.6E-07 52.6 17.8 48 13-64 116-163 (388)
35 PF07156 Prenylcys_lyase: Pren 97.5 0.0012 2.5E-08 58.7 10.8 65 3-72 119-188 (368)
36 PRK08850 2-octaprenyl-6-methox 97.4 0.034 7.3E-07 50.1 19.3 49 13-64 116-164 (405)
37 TIGR01988 Ubi-OHases Ubiquinon 97.4 0.046 1E-06 48.5 19.5 38 24-64 122-159 (385)
38 PRK05732 2-octaprenyl-6-methox 97.3 0.064 1.4E-06 47.9 20.1 48 14-64 118-165 (395)
39 PRK05714 2-octaprenyl-3-methyl 97.2 0.1 2.2E-06 47.0 20.0 59 13-77 117-175 (405)
40 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.11 2.5E-06 46.3 19.7 48 14-64 118-165 (391)
41 PRK08773 2-octaprenyl-3-methyl 97.1 0.098 2.1E-06 46.8 18.8 40 22-64 126-165 (392)
42 PRK07190 hypothetical protein; 97.0 0.076 1.7E-06 49.2 18.0 42 20-64 120-161 (487)
43 COG0654 UbiH 2-polyprenyl-6-me 97.0 0.1 2.2E-06 46.8 17.8 47 15-64 111-158 (387)
44 PRK07333 2-octaprenyl-6-methox 97.0 0.2 4.4E-06 44.9 19.7 40 22-64 124-163 (403)
45 PRK08849 2-octaprenyl-3-methyl 97.0 0.26 5.6E-06 44.1 20.7 48 14-64 116-163 (384)
46 PF13738 Pyr_redox_3: Pyridine 96.9 0.0011 2.4E-08 53.5 4.4 49 12-63 85-133 (203)
47 PRK07364 2-octaprenyl-6-methox 96.8 0.32 6.8E-06 43.8 19.9 40 23-64 136-177 (415)
48 PTZ00363 rab-GDP dissociation 96.8 0.0025 5.4E-08 58.2 6.1 56 5-63 225-285 (443)
49 PRK08013 oxidoreductase; Provi 96.7 0.41 9E-06 43.0 20.3 48 14-64 117-164 (400)
50 PRK10157 putative oxidoreducta 96.7 0.052 1.1E-06 49.4 13.6 49 13-64 112-160 (428)
51 COG3349 Uncharacterized conser 96.6 0.011 2.4E-07 54.0 8.7 212 19-256 225-463 (485)
52 PRK07608 ubiquinone biosynthes 96.6 0.51 1.1E-05 42.0 19.8 47 14-64 117-163 (388)
53 PRK07045 putative monooxygenas 96.5 0.36 7.9E-06 43.1 17.9 46 16-64 114-161 (388)
54 PRK06185 hypothetical protein; 96.5 0.6 1.3E-05 41.9 20.0 34 223-256 283-322 (407)
55 PRK06996 hypothetical protein; 96.2 0.91 2E-05 40.8 19.4 40 22-63 128-169 (398)
56 PRK06617 2-octaprenyl-6-methox 96.0 1 2.2E-05 40.1 19.8 46 15-64 111-156 (374)
57 PRK06834 hypothetical protein; 96.0 0.63 1.4E-05 43.2 16.9 42 20-64 111-152 (488)
58 TIGR02032 GG-red-SF geranylger 95.9 0.9 1.9E-05 38.4 16.7 45 17-63 99-143 (295)
59 COG0644 FixC Dehydrogenases (f 95.9 0.7 1.5E-05 41.6 16.2 55 8-64 94-148 (396)
60 PRK06183 mhpA 3-(3-hydroxyphen 95.8 1.3 2.8E-05 41.6 18.2 48 15-64 120-170 (538)
61 TIGR01989 COQ6 Ubiquinone bios 95.8 1.5 3.2E-05 40.0 20.0 51 13-64 122-179 (437)
62 PRK10015 oxidoreductase; Provi 95.5 0.44 9.6E-06 43.4 13.6 42 19-63 118-159 (429)
63 PF13454 NAD_binding_9: FAD-NA 95.5 0.031 6.8E-07 43.4 5.2 33 28-63 120-152 (156)
64 COG2081 Predicted flavoprotein 95.4 0.032 7E-07 49.5 5.5 59 9-70 108-169 (408)
65 PF01266 DAO: FAD dependent ox 95.4 0.023 5E-07 49.5 4.7 49 11-63 146-198 (358)
66 PRK06184 hypothetical protein; 95.2 1.2 2.5E-05 41.4 15.7 47 14-64 115-164 (502)
67 PRK08244 hypothetical protein; 95.1 1.4 3.1E-05 40.8 15.8 51 12-64 103-155 (493)
68 PRK06126 hypothetical protein; 95.0 0.92 2E-05 42.6 14.4 41 22-64 140-184 (545)
69 PRK08132 FAD-dependent oxidore 94.9 2.7 5.9E-05 39.5 17.4 60 14-77 131-192 (547)
70 TIGR03197 MnmC_Cterm tRNA U-34 94.8 0.045 9.7E-07 48.9 4.9 48 13-63 136-185 (381)
71 PRK11259 solA N-methyltryptoph 94.6 3 6.4E-05 36.9 16.3 39 21-63 161-199 (376)
72 PRK11445 putative oxidoreducta 94.3 3.6 7.8E-05 36.3 16.9 41 22-64 111-153 (351)
73 TIGR01790 carotene-cycl lycope 94.2 3.9 8.5E-05 36.4 18.6 42 23-70 99-140 (388)
74 PF03486 HI0933_like: HI0933-l 94.0 0.08 1.7E-06 47.9 4.7 58 10-70 107-168 (409)
75 PLN02463 lycopene beta cyclase 93.9 4.4 9.6E-05 37.2 15.9 38 22-63 127-164 (447)
76 PLN02172 flavin-containing mon 93.6 0.084 1.8E-06 48.6 4.2 51 11-63 113-168 (461)
77 TIGR03219 salicylate_mono sali 93.6 0.15 3.3E-06 46.0 5.8 49 13-64 106-155 (414)
78 PF00070 Pyr_redox: Pyridine n 93.2 0.15 3.2E-06 34.7 3.9 38 12-51 43-80 (80)
79 PRK05868 hypothetical protein; 93.0 6.3 0.00014 35.1 19.4 59 13-76 106-166 (372)
80 PRK13339 malate:quinone oxidor 92.8 0.26 5.6E-06 45.8 6.0 49 12-63 188-242 (497)
81 PF01494 FAD_binding_3: FAD bi 92.3 0.43 9.2E-06 41.4 6.5 33 224-256 291-329 (356)
82 COG0579 Predicted dehydrogenas 92.2 0.28 6E-06 44.6 5.3 48 13-63 158-206 (429)
83 PRK07236 hypothetical protein; 92.0 0.34 7.5E-06 43.3 5.7 52 10-64 98-150 (386)
84 PRK01747 mnmC bifunctional tRN 91.9 0.25 5.5E-06 47.6 5.0 48 13-63 409-458 (662)
85 PRK06847 hypothetical protein; 91.5 0.37 8E-06 42.7 5.4 41 21-64 119-159 (375)
86 PTZ00383 malate:quinone oxidor 91.5 0.36 7.9E-06 44.9 5.4 36 24-63 232-268 (497)
87 TIGR01292 TRX_reduct thioredox 91.3 0.44 9.5E-06 40.6 5.4 42 19-64 67-108 (300)
88 PRK07588 hypothetical protein; 91.1 0.45 9.8E-06 42.5 5.5 39 23-64 116-154 (391)
89 PRK04965 NADH:flavorubredoxin 90.7 0.6 1.3E-05 41.6 5.9 46 16-64 190-235 (377)
90 TIGR03862 flavo_PP4765 unchara 90.6 0.67 1.4E-05 41.5 6.0 59 9-71 83-144 (376)
91 PRK11728 hydroxyglutarate oxid 90.5 0.6 1.3E-05 41.9 5.8 48 12-63 149-199 (393)
92 TIGR03329 Phn_aa_oxid putative 90.2 0.51 1.1E-05 43.4 5.1 40 20-64 194-233 (460)
93 TIGR01377 soxA_mon sarcosine o 90.1 0.55 1.2E-05 41.7 5.1 41 19-63 155-195 (380)
94 PF06039 Mqo: Malate:quinone o 90.0 0.57 1.2E-05 42.7 5.0 61 12-78 181-250 (488)
95 PRK08163 salicylate hydroxylas 89.7 0.79 1.7E-05 40.9 5.8 39 23-64 124-162 (396)
96 PRK06753 hypothetical protein; 89.4 0.89 1.9E-05 40.3 5.9 50 12-64 98-148 (373)
97 TIGR03364 HpnW_proposed FAD de 89.4 0.83 1.8E-05 40.3 5.6 44 12-63 149-192 (365)
98 TIGR02352 thiamin_ThiO glycine 89.3 0.66 1.4E-05 40.2 4.9 48 12-63 137-188 (337)
99 PRK09897 hypothetical protein; 89.3 0.75 1.6E-05 43.2 5.5 39 24-65 124-163 (534)
100 PF00743 FMO-like: Flavin-bind 89.2 0.37 8.1E-06 45.2 3.4 55 10-64 85-146 (531)
101 TIGR01373 soxB sarcosine oxida 89.2 16 0.00035 32.7 15.1 73 177-254 311-384 (407)
102 COG2509 Uncharacterized FAD-de 89.0 0.9 1.9E-05 41.3 5.4 41 20-63 184-225 (486)
103 PRK00711 D-amino acid dehydrog 88.6 0.77 1.7E-05 41.3 5.0 47 13-63 202-252 (416)
104 PRK06416 dihydrolipoamide dehy 88.4 0.81 1.8E-05 42.0 5.0 49 13-64 217-268 (462)
105 PRK15317 alkyl hydroperoxide r 87.9 1.1 2.4E-05 41.9 5.6 43 19-64 276-318 (517)
106 PLN02507 glutathione reductase 87.5 1.3 2.8E-05 41.3 5.8 47 15-64 250-296 (499)
107 PRK05257 malate:quinone oxidor 87.4 1.2 2.6E-05 41.4 5.5 38 24-63 199-241 (494)
108 PRK06116 glutathione reductase 87.4 1.2 2.6E-05 40.7 5.5 43 19-64 218-261 (450)
109 TIGR00275 flavoprotein, HI0933 87.2 1.3 2.9E-05 39.9 5.6 49 11-63 104-155 (400)
110 PRK08294 phenol 2-monooxygenas 87.2 29 0.00063 33.4 17.6 51 24-76 158-216 (634)
111 PRK12409 D-amino acid dehydrog 87.2 1.3 2.7E-05 39.9 5.4 74 177-256 333-407 (410)
112 PRK07845 flavoprotein disulfid 87.0 1.2 2.7E-05 41.0 5.3 48 14-64 223-270 (466)
113 PF05834 Lycopene_cycl: Lycope 86.9 22 0.00048 31.7 16.9 37 24-63 101-137 (374)
114 PLN02927 antheraxanthin epoxid 85.7 1.7 3.7E-05 41.9 5.6 49 13-64 195-244 (668)
115 TIGR01424 gluta_reduc_2 glutat 85.5 1.9 4.2E-05 39.4 5.8 43 19-64 217-259 (446)
116 PRK05249 soluble pyridine nucl 85.5 1.6 3.6E-05 39.9 5.4 42 20-64 227-268 (461)
117 TIGR03140 AhpF alkyl hydropero 85.1 1.9 4.2E-05 40.2 5.7 40 22-64 280-319 (515)
118 TIGR03862 flavo_PP4765 unchara 84.6 1.3 2.8E-05 39.7 4.1 36 221-256 334-375 (376)
119 TIGR01350 lipoamide_DH dihydro 84.4 2 4.3E-05 39.4 5.4 43 19-64 221-265 (461)
120 PRK06475 salicylate hydroxylas 84.4 2.5 5.3E-05 38.0 5.9 49 14-64 113-163 (400)
121 TIGR02485 CobZ_N-term precorri 83.6 3 6.6E-05 37.9 6.2 54 9-64 120-179 (432)
122 TIGR02374 nitri_red_nirB nitri 83.4 2.4 5.1E-05 41.9 5.7 58 11-71 184-241 (785)
123 TIGR01320 mal_quin_oxido malat 83.2 2.8 6.1E-05 38.9 5.8 49 13-63 179-235 (483)
124 TIGR03452 mycothione_red mycot 83.1 3.2 6.9E-05 38.1 6.1 39 23-64 223-261 (452)
125 COG2072 TrkA Predicted flavopr 82.8 2.8 6E-05 38.5 5.6 53 12-64 85-140 (443)
126 PRK07846 mycothione reductase; 82.7 3.3 7.1E-05 38.0 6.0 41 22-65 219-259 (451)
127 COG1249 Lpd Pyruvate/2-oxoglut 82.4 3.3 7.1E-05 38.1 5.8 47 15-64 221-268 (454)
128 PRK14727 putative mercuric red 82.4 3.2 6.9E-05 38.4 5.9 43 18-64 237-279 (479)
129 PRK09754 phenylpropionate diox 82.3 2.9 6.3E-05 37.5 5.5 41 19-63 196-236 (396)
130 PRK08010 pyridine nucleotide-d 81.8 2.9 6.3E-05 38.1 5.4 43 18-64 208-250 (441)
131 TIGR03385 CoA_CoA_reduc CoA-di 81.7 2.9 6.3E-05 37.9 5.3 46 16-64 51-99 (427)
132 PRK14694 putative mercuric red 81.6 3.6 7.9E-05 37.9 6.0 48 13-64 222-269 (468)
133 PF13434 K_oxygenase: L-lysine 81.5 2 4.2E-05 38.0 3.9 40 22-63 292-336 (341)
134 TIGR03378 glycerol3P_GlpB glyc 81.2 3.7 8E-05 37.3 5.6 40 21-63 275-317 (419)
135 PRK08243 4-hydroxybenzoate 3-m 81.0 40 0.00088 30.0 16.7 33 223-255 278-316 (392)
136 PLN02697 lycopene epsilon cycl 80.1 54 0.0012 30.9 17.2 38 22-63 205-243 (529)
137 TIGR00031 UDP-GALP_mutase UDP- 79.7 2.8 6.1E-05 37.6 4.4 72 6-104 192-263 (377)
138 PRK06175 L-aspartate oxidase; 79.5 3.9 8.5E-05 37.3 5.3 49 13-64 133-185 (433)
139 TIGR02374 nitri_red_nirB nitri 79.4 2.8 6.2E-05 41.4 4.7 40 20-64 65-104 (785)
140 COG1252 Ndh NADH dehydrogenase 79.0 3.4 7.3E-05 37.4 4.6 49 10-64 210-258 (405)
141 PRK14989 nitrite reductase sub 79.0 4.8 0.0001 40.1 6.1 57 11-70 189-247 (847)
142 PRK13512 coenzyme A disulfide 78.3 4.5 9.7E-05 36.9 5.4 47 16-64 65-113 (438)
143 TIGR03169 Nterm_to_SelD pyridi 78.2 4.4 9.5E-05 35.8 5.2 42 17-64 62-103 (364)
144 COG2081 Predicted flavoprotein 78.1 2.3 5E-05 38.1 3.2 36 221-256 366-407 (408)
145 KOG1399 Flavin-containing mono 77.9 2.7 5.8E-05 38.6 3.7 52 10-63 91-148 (448)
146 PRK06912 acoL dihydrolipoamide 77.4 5.4 0.00012 36.6 5.7 43 19-64 221-264 (458)
147 PTZ00052 thioredoxin reductase 77.3 6 0.00013 36.8 6.0 46 17-65 230-275 (499)
148 PRK12809 putative oxidoreducta 77.3 3.4 7.3E-05 39.8 4.4 38 221-258 598-636 (639)
149 TIGR01421 gluta_reduc_1 glutat 77.3 6.1 0.00013 36.2 6.0 44 19-64 217-261 (450)
150 PRK09564 coenzyme A disulfide 77.0 4.4 9.5E-05 36.9 4.9 50 11-64 193-242 (444)
151 PRK13984 putative oxidoreducta 76.8 3.3 7.1E-05 39.5 4.2 37 221-257 566-602 (604)
152 TIGR01423 trypano_reduc trypan 76.7 6.5 0.00014 36.5 6.0 48 20-70 242-290 (486)
153 PRK13748 putative mercuric red 76.7 5.6 0.00012 37.5 5.7 44 17-64 318-361 (561)
154 TIGR03169 Nterm_to_SelD pyridi 76.6 4.3 9.4E-05 35.8 4.7 46 11-63 193-238 (364)
155 PRK07251 pyridine nucleotide-d 76.5 5.8 0.00013 36.1 5.6 48 13-64 202-249 (438)
156 PRK07818 dihydrolipoamide dehy 76.4 5.4 0.00012 36.7 5.4 43 20-64 224-269 (466)
157 PRK12769 putative oxidoreducta 75.5 4.4 9.6E-05 39.1 4.7 38 221-258 615-653 (654)
158 PF13434 K_oxygenase: L-lysine 75.2 3.5 7.6E-05 36.4 3.6 48 16-64 102-155 (341)
159 PRK06370 mercuric reductase; V 74.5 6.5 0.00014 36.1 5.4 50 13-64 216-267 (463)
160 TIGR02053 MerA mercuric reduct 74.5 6.1 0.00013 36.3 5.2 49 13-64 211-262 (463)
161 PTZ00318 NADH dehydrogenase-li 74.1 7.1 0.00015 35.5 5.5 45 12-63 231-275 (424)
162 PRK06327 dihydrolipoamide dehy 73.9 6.8 0.00015 36.1 5.4 42 21-64 236-280 (475)
163 PRK04965 NADH:flavorubredoxin 73.8 5.3 0.00011 35.6 4.5 43 16-64 65-107 (377)
164 PRK12810 gltD glutamate syntha 73.7 5.4 0.00012 36.8 4.6 37 221-257 428-465 (471)
165 TIGR02028 ChlP geranylgeranyl 73.5 5.6 0.00012 35.8 4.6 34 223-256 269-308 (398)
166 TIGR03385 CoA_CoA_reduc CoA-di 73.4 6.6 0.00014 35.6 5.1 46 13-63 183-228 (427)
167 KOG1346 Programmed cell death 73.4 2.1 4.6E-05 38.7 1.7 49 14-65 391-446 (659)
168 PRK12266 glpD glycerol-3-phosp 73.1 5.9 0.00013 37.0 4.8 43 19-63 165-211 (508)
169 PRK07538 hypothetical protein; 72.5 8.2 0.00018 34.8 5.5 32 223-254 296-333 (413)
170 PRK09564 coenzyme A disulfide 72.4 7.1 0.00015 35.5 5.1 42 21-64 68-111 (444)
171 TIGR01438 TGR thioredoxin and 72.1 9 0.00019 35.6 5.7 51 13-65 224-276 (484)
172 PRK09754 phenylpropionate diox 71.0 7.1 0.00015 35.0 4.7 39 21-64 70-108 (396)
173 TIGR01316 gltA glutamate synth 70.9 6 0.00013 36.3 4.2 36 221-256 413-449 (449)
174 PRK12831 putative oxidoreducta 70.7 6.4 0.00014 36.3 4.4 37 221-257 424-461 (464)
175 PRK12845 3-ketosteroid-delta-1 70.5 9.2 0.0002 36.3 5.5 57 8-68 214-278 (564)
176 TIGR01318 gltD_gamma_fam gluta 69.1 8.9 0.00019 35.4 5.0 36 222-257 430-466 (467)
177 PRK13369 glycerol-3-phosphate 68.6 6.3 0.00014 36.7 3.9 43 19-63 165-210 (502)
178 PRK04176 ribulose-1,5-biphosph 68.4 8 0.00017 32.6 4.2 37 222-258 212-256 (257)
179 TIGR01292 TRX_reduct thioredox 67.2 6.8 0.00015 33.1 3.6 35 222-256 264-300 (300)
180 PRK06115 dihydrolipoamide dehy 67.1 11 0.00023 34.8 5.1 43 19-64 225-272 (466)
181 PRK12842 putative succinate de 67.0 12 0.00026 35.5 5.5 35 222-256 523-567 (574)
182 PRK12770 putative glutamate sy 67.0 9.3 0.0002 33.7 4.5 36 222-257 314-350 (352)
183 PRK11749 dihydropyrimidine deh 66.8 7.6 0.00017 35.6 4.0 36 222-257 416-452 (457)
184 PRK05329 anaerobic glycerol-3- 66.7 12 0.00025 34.2 5.1 49 13-63 260-313 (422)
185 TIGR02023 BchP-ChlP geranylger 66.3 10 0.00022 33.9 4.6 34 223-256 263-302 (388)
186 PRK14989 nitrite reductase sub 65.9 9.7 0.00021 38.0 4.8 40 20-64 70-109 (847)
187 PTZ00058 glutathione reductase 65.8 17 0.00037 34.5 6.2 47 16-64 285-332 (561)
188 PLN00093 geranylgeranyl diphos 65.2 9.8 0.00021 35.0 4.4 34 223-256 308-347 (450)
189 TIGR00292 thiazole biosynthesi 64.8 11 0.00023 31.9 4.2 36 222-257 211-254 (254)
190 PRK12779 putative bifunctional 64.7 9.1 0.0002 38.7 4.4 37 221-257 590-627 (944)
191 TIGR01813 flavo_cyto_c flavocy 64.5 12 0.00027 33.9 5.0 50 13-64 131-188 (439)
192 KOG2820 FAD-dependent oxidored 64.2 13 0.00028 32.8 4.6 58 16-78 160-218 (399)
193 TIGR01317 GOGAT_sm_gam glutama 64.1 11 0.00024 35.0 4.6 37 221-257 442-479 (485)
194 PF00732 GMC_oxred_N: GMC oxid 63.8 13 0.00029 31.5 4.8 56 20-78 204-265 (296)
195 PRK12771 putative glutamate sy 63.3 9.8 0.00021 36.0 4.2 37 221-257 407-444 (564)
196 COG0665 DadA Glycine/D-amino a 62.4 18 0.0004 31.9 5.6 47 13-63 157-207 (387)
197 PF03486 HI0933_like: HI0933-l 61.7 6.6 0.00014 35.7 2.5 30 221-250 373-408 (409)
198 PRK06481 fumarate reductase fl 61.6 17 0.00038 33.8 5.4 35 222-256 460-503 (506)
199 PRK12778 putative bifunctional 61.2 11 0.00024 37.0 4.2 37 221-257 713-750 (752)
200 TIGR00551 nadB L-aspartate oxi 60.5 18 0.00038 33.6 5.2 35 221-255 344-388 (488)
201 PRK07512 L-aspartate oxidase; 60.3 11 0.00024 35.3 3.8 35 221-255 352-396 (513)
202 PRK06134 putative FAD-binding 60.1 16 0.00034 34.8 4.9 45 19-65 227-275 (581)
203 COG1635 THI4 Ribulose 1,5-bisp 60.0 12 0.00026 31.1 3.5 36 222-257 217-260 (262)
204 PRK12775 putative trifunctiona 59.2 15 0.00033 37.4 4.8 37 221-257 718-755 (1006)
205 TIGR01372 soxA sarcosine oxida 59.0 14 0.00031 37.5 4.6 35 223-257 438-472 (985)
206 PRK13512 coenzyme A disulfide 58.8 20 0.00043 32.7 5.2 41 17-64 197-237 (438)
207 PRK06467 dihydrolipoamide dehy 58.5 21 0.00046 32.9 5.4 39 24-64 229-270 (471)
208 PRK12814 putative NADPH-depend 57.4 16 0.00036 35.2 4.6 37 221-257 464-501 (652)
209 COG1251 NirB NAD(P)H-nitrite r 57.3 13 0.00029 36.1 3.8 43 17-64 67-109 (793)
210 PRK10262 thioredoxin reductase 57.2 24 0.00052 30.5 5.3 38 221-258 277-316 (321)
211 TIGR01789 lycopene_cycl lycope 57.1 21 0.00045 31.9 4.9 45 12-63 89-133 (370)
212 PRK08274 tricarballylate dehyd 55.7 27 0.00058 32.0 5.6 51 12-64 131-188 (466)
213 TIGR00275 flavoprotein, HI0933 54.8 9.6 0.00021 34.4 2.4 29 221-249 365-399 (400)
214 PRK12837 3-ketosteroid-delta-1 54.0 27 0.00059 32.6 5.3 33 222-254 468-510 (513)
215 PF00996 GDI: GDP dissociation 53.7 16 0.00035 33.5 3.6 54 6-63 226-284 (438)
216 PLN02661 Putative thiazole syn 53.3 19 0.00042 32.0 4.0 36 222-257 285-328 (357)
217 PRK05976 dihydrolipoamide dehy 52.9 28 0.00062 32.0 5.3 45 19-64 231-277 (472)
218 COG0492 TrxB Thioredoxin reduc 52.6 36 0.00077 29.6 5.5 37 221-257 263-301 (305)
219 TIGR03315 Se_ygfK putative sel 51.2 20 0.00044 36.5 4.2 34 222-255 804-838 (1012)
220 PRK12835 3-ketosteroid-delta-1 51.2 30 0.00064 33.0 5.2 35 222-256 526-570 (584)
221 PRK09231 fumarate reductase fl 51.1 37 0.0008 32.4 5.8 49 14-64 139-192 (582)
222 PRK09853 putative selenate red 51.0 23 0.0005 36.1 4.5 37 221-257 805-842 (1019)
223 PLN02546 glutathione reductase 50.8 30 0.00065 32.8 5.1 44 19-64 303-346 (558)
224 PRK07121 hypothetical protein; 50.4 35 0.00076 31.6 5.4 34 222-255 448-490 (492)
225 TIGR02462 pyranose_ox pyranose 50.1 36 0.00079 32.2 5.5 49 23-71 228-282 (544)
226 PRK06292 dihydrolipoamide dehy 50.1 42 0.0009 30.7 5.9 43 19-64 220-264 (460)
227 PRK06263 sdhA succinate dehydr 49.4 38 0.00083 31.9 5.6 35 221-255 359-402 (543)
228 PF01134 GIDA: Glucose inhibit 49.4 38 0.00083 30.6 5.3 36 221-256 353-388 (392)
229 PF01134 GIDA: Glucose inhibit 48.9 82 0.0018 28.5 7.3 45 16-64 103-148 (392)
230 PF04820 Trp_halogenase: Trypt 48.3 30 0.00065 31.8 4.6 49 11-63 156-206 (454)
231 KOG1336 Monodehydroascorbate/f 48.1 25 0.00054 32.4 3.9 40 20-64 138-177 (478)
232 TIGR03377 glycerol3P_GlpA glyc 47.5 27 0.00058 32.6 4.3 43 19-63 138-185 (516)
233 PRK05335 tRNA (uracil-5-)-meth 47.5 67 0.0015 29.5 6.5 36 221-256 328-363 (436)
234 PRK06069 sdhA succinate dehydr 47.3 38 0.00081 32.2 5.2 51 12-64 141-196 (577)
235 KOG1336 Monodehydroascorbate/f 47.3 36 0.00078 31.4 4.7 58 9-69 255-314 (478)
236 PRK12843 putative FAD-binding 46.7 33 0.00072 32.6 4.8 35 222-256 528-572 (578)
237 TIGR03140 AhpF alkyl hydropero 46.5 40 0.00087 31.5 5.2 48 15-64 394-446 (515)
238 PTZ00153 lipoamide dehydrogena 46.3 46 0.00099 32.3 5.6 49 18-69 363-428 (659)
239 COG0446 HcaD Uncharacterized N 46.2 35 0.00077 30.1 4.7 50 11-63 180-232 (415)
240 TIGR01812 sdhA_frdA_Gneg succi 45.1 46 0.001 31.4 5.5 35 221-255 357-401 (566)
241 PRK11101 glpA sn-glycerol-3-ph 45.0 33 0.00071 32.4 4.4 42 20-63 160-206 (546)
242 TIGR03143 AhpF_homolog putativ 44.2 38 0.00082 32.0 4.7 36 222-257 272-309 (555)
243 TIGR01810 betA choline dehydro 42.7 50 0.0011 31.0 5.2 50 21-72 206-259 (532)
244 PF00890 FAD_binding_2: FAD bi 42.6 37 0.0008 30.4 4.3 55 10-66 139-201 (417)
245 TIGR02023 BchP-ChlP geranylger 42.4 49 0.0011 29.5 5.0 42 20-64 103-151 (388)
246 PRK10262 thioredoxin reductase 42.2 18 0.00038 31.3 2.0 41 19-64 73-113 (321)
247 PRK07843 3-ketosteroid-delta-1 41.8 50 0.0011 31.2 5.1 33 222-254 513-555 (557)
248 TIGR01421 gluta_reduc_1 glutat 41.3 44 0.00096 30.6 4.6 34 221-254 293-327 (450)
249 PRK05945 sdhA succinate dehydr 41.2 59 0.0013 30.9 5.5 34 222-255 369-412 (575)
250 PRK05192 tRNA uridine 5-carbox 40.8 69 0.0015 30.8 5.8 45 16-64 108-153 (618)
251 KOG1439 RAB proteins geranylge 40.7 49 0.0011 29.9 4.5 56 6-63 226-284 (440)
252 PRK06116 glutathione reductase 40.4 45 0.00097 30.4 4.5 34 221-254 293-327 (450)
253 PRK13977 myosin-cross-reactive 40.0 57 0.0012 31.1 5.1 34 221-254 484-522 (576)
254 TIGR00136 gidA glucose-inhibit 39.5 1.2E+02 0.0025 29.3 7.1 33 222-254 356-388 (617)
255 TIGR01176 fum_red_Fp fumarate 39.0 77 0.0017 30.2 5.9 35 221-255 368-412 (580)
256 PRK06854 adenylylsulfate reduc 38.5 72 0.0016 30.6 5.7 40 23-64 147-191 (608)
257 TIGR01811 sdhA_Bsu succinate d 37.7 79 0.0017 30.3 5.8 35 221-255 381-424 (603)
258 PLN02661 Putative thiazole syn 37.4 63 0.0014 28.8 4.7 51 12-64 176-240 (357)
259 COG3486 IucD Lysine/ornithine 37.2 47 0.001 30.1 3.8 40 23-64 292-336 (436)
260 PRK05976 dihydrolipoamide dehy 36.6 55 0.0012 30.1 4.4 33 222-254 309-342 (472)
261 PRK07395 L-aspartate oxidase; 36.2 40 0.00087 31.9 3.5 49 13-64 139-193 (553)
262 PF07992 Pyr_redox_2: Pyridine 35.6 31 0.00066 27.1 2.3 39 22-63 71-117 (201)
263 PLN02507 glutathione reductase 35.4 64 0.0014 30.1 4.7 34 221-254 328-362 (499)
264 TIGR02360 pbenz_hydroxyl 4-hyd 35.4 82 0.0018 28.1 5.3 32 223-254 278-315 (390)
265 TIGR03143 AhpF_homolog putativ 35.3 44 0.00096 31.6 3.7 41 19-64 70-110 (555)
266 PTZ00318 NADH dehydrogenase-li 35.3 66 0.0014 29.1 4.7 35 222-256 307-347 (424)
267 PRK07804 L-aspartate oxidase; 34.8 79 0.0017 29.8 5.2 35 221-255 368-412 (541)
268 PRK08071 L-aspartate oxidase; 34.5 65 0.0014 30.1 4.6 49 14-64 132-186 (510)
269 PRK12839 hypothetical protein; 34.4 81 0.0018 30.0 5.3 34 222-255 524-567 (572)
270 PRK08275 putative oxidoreducta 34.1 1E+02 0.0023 29.1 5.9 35 221-255 367-403 (554)
271 PRK07845 flavoprotein disulfid 34.0 76 0.0016 29.2 4.9 34 221-254 302-336 (466)
272 COG1251 NirB NAD(P)H-nitrite r 33.4 42 0.0009 32.8 3.1 57 12-71 190-246 (793)
273 PRK08401 L-aspartate oxidase; 33.4 77 0.0017 29.2 4.9 34 221-254 321-364 (466)
274 PRK12834 putative FAD-binding 33.0 85 0.0018 29.6 5.2 33 222-254 503-548 (549)
275 PTZ00367 squalene epoxidase; P 32.6 4.5E+02 0.0097 25.1 18.6 31 223-253 336-372 (567)
276 TIGR00292 thiazole biosynthesi 32.5 1.1E+02 0.0023 25.8 5.2 45 21-70 112-169 (254)
277 PRK12844 3-ketosteroid-delta-1 32.0 87 0.0019 29.7 5.0 36 222-257 506-551 (557)
278 PRK12844 3-ketosteroid-delta-1 31.9 60 0.0013 30.7 3.9 47 20-69 219-270 (557)
279 PTZ00306 NADH-dependent fumara 31.0 95 0.0021 32.4 5.5 35 222-256 859-902 (1167)
280 PRK08626 fumarate reductase fl 30.9 1E+02 0.0022 29.9 5.4 42 21-64 170-216 (657)
281 PRK02106 choline dehydrogenase 30.4 85 0.0018 29.6 4.7 49 21-71 213-265 (560)
282 PRK06444 prephenate dehydrogen 30.0 54 0.0012 26.5 2.9 46 4-78 4-50 (197)
283 cd06409 PB1_MUG70 The MUG70 pr 29.9 86 0.0019 21.7 3.4 20 7-26 19-38 (86)
284 PRK05249 soluble pyridine nucl 29.7 79 0.0017 28.9 4.3 34 221-254 300-334 (461)
285 COG4529 Uncharacterized protei 29.3 1.2E+02 0.0025 28.2 5.1 41 28-69 125-165 (474)
286 PRK07121 hypothetical protein; 28.9 69 0.0015 29.6 3.8 51 12-64 177-235 (492)
287 TIGR01424 gluta_reduc_2 glutat 28.7 89 0.0019 28.5 4.4 34 221-254 291-325 (446)
288 PF12831 FAD_oxidored: FAD dep 28.4 19 0.00041 32.7 0.0 53 9-63 90-145 (428)
289 PRK06481 fumarate reductase fl 28.1 73 0.0016 29.7 3.8 43 21-65 202-248 (506)
290 PRK14727 putative mercuric red 28.0 92 0.002 28.8 4.4 34 221-254 311-345 (479)
291 COG1252 Ndh NADH dehydrogenase 28.0 1.1E+02 0.0023 27.9 4.7 37 221-257 289-332 (405)
292 TIGR01350 lipoamide_DH dihydro 27.9 80 0.0017 28.8 4.0 34 222-255 298-332 (461)
293 KOG2404 Fumarate reductase, fl 27.9 82 0.0018 27.9 3.7 39 24-64 160-202 (477)
294 PLN02852 ferredoxin-NADP+ redu 27.4 60 0.0013 30.3 3.0 34 223-256 386-421 (491)
295 PRK07573 sdhA succinate dehydr 27.4 1.3E+02 0.0029 29.1 5.5 42 21-64 182-228 (640)
296 PRK15317 alkyl hydroperoxide r 27.3 51 0.0011 30.8 2.6 37 221-257 474-512 (517)
297 TIGR01816 sdhA_forward succina 26.7 1.4E+02 0.0031 28.3 5.5 34 222-255 352-395 (565)
298 PRK06292 dihydrolipoamide dehy 26.3 94 0.002 28.3 4.2 34 221-254 296-330 (460)
299 PRK09078 sdhA succinate dehydr 26.0 1.8E+02 0.0038 27.9 6.0 51 11-67 152-208 (598)
300 COG1249 Lpd Pyruvate/2-oxoglut 25.6 1E+02 0.0022 28.5 4.1 32 223-254 302-334 (454)
301 PRK07818 dihydrolipoamide dehy 25.5 1E+02 0.0022 28.2 4.3 34 221-254 301-335 (466)
302 PRK06416 dihydrolipoamide dehy 25.3 1E+02 0.0022 28.1 4.2 34 221-254 299-333 (462)
303 PF06100 Strep_67kDa_ant: Stre 25.2 1.8E+02 0.0039 27.2 5.6 29 221-249 466-499 (500)
304 TIGR00031 UDP-GALP_mutase UDP- 25.1 74 0.0016 28.6 3.1 30 223-253 344-376 (377)
305 PRK06327 dihydrolipoamide dehy 25.1 1E+02 0.0023 28.3 4.2 34 221-254 312-346 (475)
306 PF04405 ScdA_N: Domain of Unk 25.0 43 0.00093 21.1 1.1 28 231-258 25-54 (56)
307 PRK12835 3-ketosteroid-delta-1 25.0 1.1E+02 0.0023 29.3 4.3 45 19-66 223-273 (584)
308 PRK06467 dihydrolipoamide dehy 25.0 96 0.0021 28.6 4.0 34 221-254 302-336 (471)
309 PRK08010 pyridine nucleotide-d 24.9 1.1E+02 0.0023 27.9 4.2 34 221-254 282-316 (441)
310 PLN02815 L-aspartate oxidase 24.8 1.4E+02 0.003 28.6 5.1 35 221-255 388-432 (594)
311 PRK06452 sdhA succinate dehydr 24.7 1.5E+02 0.0034 28.1 5.4 34 223-256 360-403 (566)
312 PRK06370 mercuric reductase; V 24.4 1.2E+02 0.0026 27.8 4.5 34 221-254 299-333 (463)
313 PRK07803 sdhA succinate dehydr 24.4 1.4E+02 0.0029 28.9 4.9 34 222-255 404-446 (626)
314 PRK06912 acoL dihydrolipoamide 24.4 1.3E+02 0.0028 27.6 4.6 34 221-254 295-329 (458)
315 KOG1335 Dihydrolipoamide dehyd 24.3 1.5E+02 0.0033 27.0 4.7 49 13-63 256-309 (506)
316 TIGR01423 trypano_reduc trypan 24.3 1.2E+02 0.0026 28.2 4.4 34 221-254 316-350 (486)
317 PLN02464 glycerol-3-phosphate 24.2 1.2E+02 0.0026 29.3 4.5 42 20-63 243-291 (627)
318 KOG2854 Possible pfkB family c 24.1 21 0.00045 31.3 -0.5 25 234-258 310-334 (343)
319 PRK12842 putative succinate de 24.0 1E+02 0.0023 29.2 4.1 54 13-68 215-275 (574)
320 COG2509 Uncharacterized FAD-de 24.0 90 0.002 28.8 3.4 37 221-257 447-484 (486)
321 KOG2844 Dimethylglycine dehydr 23.9 87 0.0019 30.5 3.4 48 13-63 188-238 (856)
322 PRK05675 sdhA succinate dehydr 23.9 2E+02 0.0043 27.3 5.9 34 222-255 361-404 (570)
323 TIGR02053 MerA mercuric reduct 23.8 1.1E+02 0.0025 27.9 4.2 35 221-255 294-329 (463)
324 PRK06847 hypothetical protein; 23.6 1.1E+02 0.0024 26.8 4.0 32 223-254 281-318 (375)
325 PRK11749 dihydropyrimidine deh 23.4 1.1E+02 0.0024 28.0 4.0 42 20-63 322-382 (457)
326 PRK14694 putative mercuric red 23.4 1.2E+02 0.0026 27.8 4.3 34 221-254 300-334 (468)
327 PF05189 RTC_insert: RNA 3'-te 23.2 2.7E+02 0.0059 19.5 5.8 34 223-257 68-101 (103)
328 PRK06263 sdhA succinate dehydr 23.1 95 0.0021 29.2 3.6 41 22-64 147-193 (543)
329 COG0492 TrxB Thioredoxin reduc 23.1 83 0.0018 27.3 3.0 38 21-63 73-110 (305)
330 TIGR01816 sdhA_forward succina 23.1 1.1E+02 0.0023 29.2 3.9 49 14-64 121-177 (565)
331 PRK04176 ribulose-1,5-biphosph 23.0 1.1E+02 0.0025 25.6 3.7 41 21-63 116-168 (257)
332 PTZ00139 Succinate dehydrogena 22.9 2E+02 0.0044 27.7 5.8 51 11-67 169-225 (617)
333 PRK08641 sdhA succinate dehydr 22.8 1E+02 0.0022 29.4 3.8 35 221-255 366-409 (589)
334 PRK13748 putative mercuric red 22.6 1.2E+02 0.0026 28.6 4.2 34 221-254 393-427 (561)
335 PRK06115 dihydrolipoamide dehy 22.5 1.3E+02 0.0029 27.6 4.4 34 221-254 303-337 (466)
336 PRK08205 sdhA succinate dehydr 22.1 2E+02 0.0044 27.4 5.6 51 11-67 143-202 (583)
337 TIGR02360 pbenz_hydroxyl 4-hyd 21.9 1.5E+02 0.0032 26.5 4.5 52 22-76 116-169 (390)
338 PRK08958 sdhA succinate dehydr 21.6 1E+02 0.0022 29.5 3.5 34 222-255 379-422 (588)
339 KOG1346 Programmed cell death 21.4 1.1E+02 0.0024 28.1 3.4 48 23-77 271-318 (659)
340 TIGR02485 CobZ_N-term precorri 20.9 1.3E+02 0.0029 27.2 4.0 35 222-256 386-430 (432)
341 PRK05675 sdhA succinate dehydr 20.7 1.3E+02 0.0028 28.6 4.0 51 13-64 127-185 (570)
342 TIGR01438 TGR thioredoxin and 20.7 1.5E+02 0.0033 27.5 4.3 34 221-254 308-343 (484)
343 PRK05945 sdhA succinate dehydr 20.6 1.4E+02 0.003 28.4 4.2 41 22-64 148-193 (575)
344 PRK07843 3-ketosteroid-delta-1 20.5 1.1E+02 0.0024 28.9 3.5 47 20-68 219-269 (557)
345 PRK12839 hypothetical protein; 20.4 1.2E+02 0.0026 28.9 3.6 48 20-68 225-276 (572)
346 PRK12834 putative FAD-binding 20.2 1.2E+02 0.0026 28.6 3.6 44 23-68 166-227 (549)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=293.60 Aligned_cols=229 Identities=30% Similarity=0.522 Sum_probs=200.9
Q ss_pred eecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCC
Q 024990 5 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDL 84 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~ 84 (259)
|++.+||++|++.||..+++ +++++|+.|.+ .++.|+|++++|+....||.||+| .|+||+..||... ..
T Consensus 101 yvg~pgmsalak~LAtdL~V--~~~~rVt~v~~--~~~~W~l~~~~g~~~~~~d~vvla---~PAPQ~~~LLt~~---~~ 170 (331)
T COG3380 101 YVGEPGMSALAKFLATDLTV--VLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVVLA---IPAPQTATLLTTD---AD 170 (331)
T ss_pred cccCcchHHHHHHHhccchh--hhhhhhhhhee--cCCeeEEEecCCCcccccceEEEe---cCCCcchhhcCcc---cc
Confidence 99999999999999998877 99999999998 678999999888755589999999 9999999999642 11
Q ss_pred CcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHhhc
Q 024990 85 TFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQT 164 (259)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
....++++.+..+.|.|||++++.|++++. .|+.|..+ ++++|.|+.++.+|+|+.+.++.||+|++++|++.|++.
T Consensus 171 ~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~- 247 (331)
T COG3380 171 DLPAALRAALADVVYAPCWSAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH- 247 (331)
T ss_pred cchHHHHHhhccceehhHHHHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC-
Confidence 245678999999999999999999998875 68999555 446899999998899998878899999999999999998
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhcCC-CCCCCceEeEeeccccCCCCCcCCCCCeee-cCCCCEEEeecCCCCCChhHHH
Q 024990 165 GLQKPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAI 242 (259)
Q Consensus 165 ~~~~~~~~~~e~v~~~l~~~~~~~~~-~~~~p~~~~~~rW~~a~p~~~~g~~~~~~~-~~~~~l~laGD~~~g~~ie~A~ 242 (259)
+.|+++..+..++..+.+ .+++|.+..+|||+||+|+.... .+.+. +...+|++|||||.|+++|+|+
T Consensus 248 --------~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~--~~~L~ad~~~~l~~cGDwc~GgrVEgA~ 317 (331)
T COG3380 248 --------PAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVA--GPPLDADRELPLYACGDWCAGGRVEGAV 317 (331)
T ss_pred --------CHHHHHHHHHHhhhhccCCCCCcchHHHhhcccccccccccc--CCccccCCCCceeeecccccCcchhHHH
Confidence 678888888888877744 67899999999999999998764 46666 7788999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 024990 243 LSGLDAASKLTEIL 256 (259)
Q Consensus 243 ~SG~~aA~~l~~~l 256 (259)
.||+.+|++|++.|
T Consensus 318 LSGlAaA~~i~~~L 331 (331)
T COG3380 318 LSGLAAADHILNGL 331 (331)
T ss_pred hccHHHHHHHHhcC
Confidence 99999999998764
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=5e-29 Score=227.57 Aligned_cols=230 Identities=13% Similarity=0.174 Sum_probs=179.5
Q ss_pred eecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCC
Q 024990 5 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 83 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~ 83 (259)
+...+||++|++.|++.++ .+|+++++|.+|++ ++++|.|++++|+.+ .||+||+| +|++++..+++.
T Consensus 218 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~~-~ad~VI~t---~P~~~~~~ll~~----- 286 (462)
T TIGR00562 218 QTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSH--RGSNYTLELDNGVTV-ETDSVVVT---APHKAAAGLLSE----- 286 (462)
T ss_pred EecchhHHHHHHHHHHHhccCeEEcCCeEEEEEe--cCCcEEEEECCCcEE-EcCEEEEC---CCHHHHHHHhcc-----
Confidence 4578999999999999986 78999999999998 778899988888653 89999999 999999999975
Q ss_pred CCcchhHHHHhccCCCcceeEEEEeccCCCCCCCc--cceeecCC---CceEEEEecCCCCCCCCC-CceEEEEeCHHHH
Q 024990 84 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPV--KGFSFQDS---EVLSWAHCDSSKPGRSAN-SERWVLHSTADYA 157 (259)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~--~g~~~~~~---~~l~~~~~~~~k~~~~~~-~~~~~~~~~~~~~ 157 (259)
..++..+.+.++.|.+++++++.|+++.+..+. .|++++.. ..+.|++..+.+|++.+. ...++++.+..++
T Consensus 287 --~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~ 364 (462)
T TIGR00562 287 --LSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATD 364 (462)
T ss_pred --cCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCC
Confidence 556788899999999999999999876433223 34444432 345666544444666543 2356666665544
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCC------CeeecCCCCEEEeec
Q 024990 158 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGD 231 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~------~~~~~~~~~l~laGD 231 (259)
..+.+. +++++.+.+++++.++++...+|....++||++++|++.+|+.. +.+....++|++|||
T Consensus 365 ~~~~~~---------~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~ 435 (462)
T TIGR00562 365 ESIVDL---------SENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGN 435 (462)
T ss_pred ccccCC---------CHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEecc
Confidence 444443 57889999999999887654468999999999999999887631 112234579999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 232 FCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 232 ~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
|+.|.+||+|++||+++|++|++.|
T Consensus 436 ~~~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 436 SFEGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998875
No 3
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=8.3e-27 Score=214.82 Aligned_cols=231 Identities=16% Similarity=0.157 Sum_probs=173.5
Q ss_pred eecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCc-eEEEcc--CCCccccccEEEecCCCCCCcchhhhcCCCC
Q 024990 5 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNL-WSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 80 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~-~~v~~~--~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~ 80 (259)
|..++||++|+++|++.++ .+|++|++|.+|++ .+++ |.|+.. +|+....||+||+| +|++++..++..
T Consensus 232 ~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~--~~~~~~~v~~~~~~g~~~~~ad~VI~a---~P~~~l~~ll~~-- 304 (496)
T PLN02576 232 GSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSK--NDDGGYSLTYDTPEGKVNVTAKAVVMT---APLYVVSEMLRP-- 304 (496)
T ss_pred EeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEE--CCCCcEEEEEecCCCceeEEeCEEEEC---CCHHHHHHHhcc--
Confidence 6778999999999999997 68999999999998 5665 877654 45322489999999 999999999975
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCC------Ccccee--ecCC---CceEEEEecCCCCCCCCCC-ceE
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI------PVKGFS--FQDS---EVLSWAHCDSSKPGRSANS-ERW 148 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~------~~~g~~--~~~~---~~l~~~~~~~~k~~~~~~~-~~~ 148 (259)
..++..+.+.+++|.+++++++.|+++.+.. +..++. +++. ..+.++.....+|++.+.. ..+
T Consensus 305 -----~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l 379 (496)
T PLN02576 305 -----KSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLL 379 (496)
T ss_pred -----cCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEE
Confidence 4677888999999999999999998865422 334443 3321 2345555444457665433 345
Q ss_pred EEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC--CCCceEeEeeccccCCCCCcCCCCCe-----eec
Q 024990 149 VLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKEERC-----LWD 221 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~--~~p~~~~~~rW~~a~p~~~~g~~~~~-----~~~ 221 (259)
+++.....+..+.+. +++++.+.+++++.++++.. ++|....+++|++++|++..|+.... ..+
T Consensus 380 ~~~~~~~~~~~~~~~---------s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~ 450 (496)
T PLN02576 380 LNYIGGSRNTGIASA---------SEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEK 450 (496)
T ss_pred EEEECCCCCcccccC---------CHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHH
Confidence 556654444444433 57899999999999876533 36788889999999999988763211 112
Q ss_pred CC--CCEEEeecCCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VK--RRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~--~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.. ++|++||||+.|.+|++|++||+++|++|++.+
T Consensus 451 ~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~ 487 (496)
T PLN02576 451 DLGLPGLFLGGNYRGGVALGKCVESGYEAADLVISYL 487 (496)
T ss_pred hcCCCCEEEeccccCCccHHHHHHHHHHHHHHHHHHH
Confidence 23 699999999999999999999999999998865
No 4
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.95 E-value=2e-26 Score=210.65 Aligned_cols=227 Identities=12% Similarity=0.129 Sum_probs=171.6
Q ss_pred eecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCC
Q 024990 5 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 83 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~ 83 (259)
+.+++||++|+++|++.++ ++|++|++|++|+. ++++|.|++.+|+.+ .+|+||+| +|++++..|+..
T Consensus 219 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~~-~ad~VI~a---~p~~~~~~ll~~----- 287 (463)
T PRK12416 219 VSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK--QGDRYEISFANHESI-QADYVVLA---APHDIAETLLQS----- 287 (463)
T ss_pred EeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEC---CCHHHHHhhcCC-----
Confidence 4679999999999999985 47899999999998 677899988788654 89999999 999999888864
Q ss_pred CCcchhHHHHhccCCCcceeEEEEeccCCCCCCC--ccceeecCCCc--eEEEEecCCC-CCCCCCCceEEEEeC----H
Q 024990 84 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSEV--LSWAHCDSSK-PGRSANSERWVLHST----A 154 (259)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~g~~~~~~~~--l~~~~~~~~k-~~~~~~~~~~~~~~~----~ 154 (259)
+++...+.++.|.+++++++.|+.+.+..+ ..|+++++++. ...+.+.+.+ +++.+. ..+++.+. .
T Consensus 288 ----~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~-~~~l~~~~~~~~~ 362 (463)
T PRK12416 288 ----NELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGK-QKLLVRMFYKSTN 362 (463)
T ss_pred ----cchhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCC-CeEEEEEEeCCCC
Confidence 345566888999999999999997643333 34555554432 2234455555 444432 23333321 2
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCC------CeeecCCCCEEE
Q 024990 155 DYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAI 228 (259)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~------~~~~~~~~~l~l 228 (259)
....+..+. +++++.+.+++++.++++...+|+.+.++||+++.|+|..++.. ..+....++|++
T Consensus 363 ~~~~~~~~~---------~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~ 433 (463)
T PRK12416 363 PVYETIKNY---------SEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYL 433 (463)
T ss_pred CCchhhhcC---------CHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEE
Confidence 233333333 57899999999999987766789999999999999999887632 122244679999
Q ss_pred eecCCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 229 CGDFCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 229 aGD~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
||||+.|.+|++|++||+++|++|++.+
T Consensus 434 aG~~~~g~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 434 AGASYYGVGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred eccccccccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998765
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.93 E-value=7.6e-25 Score=199.23 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=170.5
Q ss_pred eecCCCchHHHHHHhcCCCC-eeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCC
Q 024990 5 YVGVPGMNSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 83 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~~-~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~ 83 (259)
+..++||++|+++|++.++. +|+++++|.+|+. ++++|.|.+.+|+. ..||+||+| +|++++.+++..
T Consensus 214 ~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g~~-~~~d~vI~a---~p~~~~~~l~~~----- 282 (451)
T PRK11883 214 GTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK--SGDGYEIVLSNGGE-IEADAVIVA---VPHPVLPSLFVA----- 282 (451)
T ss_pred EeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE--cCCeEEEEECCCCE-EEcCEEEEC---CCHHHHHHhccC-----
Confidence 57899999999999999976 7999999999998 67789998888876 489999999 999999998653
Q ss_pred CCcchhHHHHhccCCCcceeEEEEeccCCCC-CCCccceeecC--CCceEEEEecCCC-CCCCCCCceEEEEeCHHHHHH
Q 024990 84 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLS-SIPVKGFSFQD--SEVLSWAHCDSSK-PGRSANSERWVLHSTADYART 159 (259)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~g~~~~~--~~~l~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~ 159 (259)
+...++++.++|.++.++++.|++++. ..+..+++++. ...+.++.+++.+ +...+.+..++..+.+.++..
T Consensus 283 ----~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~ 358 (451)
T PRK11883 283 ----PPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDE 358 (451)
T ss_pred ----hhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCc
Confidence 345677889999999999999998742 22334555542 2235566666665 444443445555444433322
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCC--eee---cCCCCEEEeecCCC
Q 024990 160 VIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER--CLW---DVKRRLAICGDFCV 234 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~--~~~---~~~~~l~laGD~~~ 234 (259)
.... .+++++.+.+++.+.++++...+|+...++||++++|.+.+++... .+. ...++|++||||+.
T Consensus 359 ~~~~--------~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~ 430 (451)
T PRK11883 359 AVVD--------ATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFE 430 (451)
T ss_pred hhcc--------CCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccC
Confidence 2111 1578899999999988766556788999999999999987765211 011 11458999999999
Q ss_pred CCChhHHHHHHHHHHHHHHh
Q 024990 235 SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 235 g~~ie~A~~SG~~aA~~l~~ 254 (259)
+.+|++|++||+++|++|++
T Consensus 431 g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 431 GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999975
No 6
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.90 E-value=2.4e-22 Score=180.86 Aligned_cols=218 Identities=17% Similarity=0.216 Sum_probs=154.7
Q ss_pred eecCCCchHHHHH-HhcCC---CCeeEcceEEEEEEeecCCCceEEEc-cCCCccccccEEEecCCCCCCcchhhhcCCC
Q 024990 5 YVGVPGMNSICKA-LCHQP---GVESKFGVGVGRFEWLEDKNLWSVSG-LDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 79 (259)
Q Consensus 5 ~~~~~Gm~~l~~~-La~~l---~~~i~~~~~V~~I~~~~~~~~~~v~~-~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~ 79 (259)
+.+++||+++... |++.+ +++|++|++|.+|+. ++++|++.. .+|+.+ .||+||+| +|++++.+|++.
T Consensus 189 ~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~~~~~~~~~~g~~~-~~d~vi~a---~p~~~~~~ll~~- 261 (419)
T TIGR03467 189 LLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA--NAGGIRALVLSGGETL-PADAVVLA---VPPRHAASLLPG- 261 (419)
T ss_pred eeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE--cCCcceEEEecCCccc-cCCEEEEc---CCHHHHHHhCCC-
Confidence 4567899887644 66544 788999999999998 667765433 356553 89999999 999999999864
Q ss_pred CCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCC-CCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHH
Q 024990 80 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYAR 158 (259)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 158 (259)
+...+.++.++|.+++++++.|+++++. .++.| +.. +...|++..+.+++.. ..+.+.... +.
T Consensus 262 --------~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~--~~ 325 (419)
T TIGR03467 262 --------EDLGALLTALGYSPITTVHLRLDRAVRLPAPMVG--LVG-GLAQWLFDRGQLAGEP---GYLAVVISA--AR 325 (419)
T ss_pred --------chHHHHHhhcCCcceEEEEEEeCCCcCCCCCeee--ecC-CceeEEEECCcCCCCC---CEEEEEEec--ch
Confidence 2456678899999999999999998752 33333 222 3456776655443322 122222222 22
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC--CCCceEeEeeccccCCCCCcCCC--CCeeecCCCCEEEeecCCC
Q 024990 159 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCV 234 (259)
Q Consensus 159 ~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~--~~p~~~~~~rW~~a~p~~~~g~~--~~~~~~~~~~l~laGD~~~ 234 (259)
.+.+. +++++.+.+++.+.++++.. ..|.+.++.+|..+.+.+.+++. .+.+.++.++|++||||+.
T Consensus 326 ~~~~~---------~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~ 396 (419)
T TIGR03467 326 DLVDL---------PREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTA 396 (419)
T ss_pred hhccC---------CHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEeccccc
Confidence 33333 57899999999999887643 35667777788777766655543 3445566789999999998
Q ss_pred CC---ChhHHHHHHHHHHHHHHh
Q 024990 235 SP---NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 235 g~---~ie~A~~SG~~aA~~l~~ 254 (259)
++ +||||++||++||++|++
T Consensus 397 ~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 397 TGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCCcchHHHHHHHHHHHHHHHhC
Confidence 74 899999999999999863
No 7
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.90 E-value=1.1e-22 Score=181.68 Aligned_cols=227 Identities=15% Similarity=0.217 Sum_probs=177.2
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 83 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~ 83 (259)
.+..++||++|+++|++.+..+|+++++|++|.. +.+++.+.+.+|.. .+||.||+| .|++.+..+++.
T Consensus 207 ~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~--~~~~~~~~~~~g~~-~~~D~VI~t---~p~~~l~~ll~~----- 275 (444)
T COG1232 207 FGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDK--KGAGKTIVDVGGEK-ITADGVIST---APLPELARLLGD----- 275 (444)
T ss_pred ccccCccHHHHHHHHHHHhhhceeecceeeEEEE--cCCccEEEEcCCce-EEcceEEEc---CCHHHHHHHcCC-----
Confidence 4567999999999999999988999999999998 66677777777766 489999999 999999999986
Q ss_pred CCcchhHHHHhccCCCcceeEEEEeccCCCCC--CCccceeecCCCc-eEEEEecCCC-CCCCCCC-ceEEEEeCHHHHH
Q 024990 84 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSEV-LSWAHCDSSK-PGRSANS-ERWVLHSTADYAR 158 (259)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~g~~~~~~~~-l~~~~~~~~k-~~~~~~~-~~~~~~~~~~~~~ 158 (259)
......+.++.|.+..++.+.++++... ....|+++++... +..+++.|.| |...+.+ ..+.+.....+..
T Consensus 276 ----~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~ 351 (444)
T COG1232 276 ----EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDE 351 (444)
T ss_pred ----cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCc
Confidence 2345567889999999999999875211 2335777776555 7788888888 7666533 3344444332222
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCC------eeecCCCCEEEeecC
Q 024990 159 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER------CLWDVKRRLAICGDF 232 (259)
Q Consensus 159 ~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~------~~~~~~~~l~laGD~ 232 (259)
..... ++|++.+..++++.++++...+|.+++++||+++.|+|..||.+. .+...+++|.++|.|
T Consensus 352 ~~~~~---------~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~ 422 (444)
T COG1232 352 SVSTM---------SDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRY 422 (444)
T ss_pred chhcc---------CHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccC
Confidence 12222 579999999999999988878889999999999999999987421 122234899999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHh
Q 024990 233 CVSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 233 ~~g~~ie~A~~SG~~aA~~l~~ 254 (259)
+.|.++++|+.+|..||++|++
T Consensus 423 ~~g~g~~d~I~~g~~aa~~l~~ 444 (444)
T COG1232 423 GEGVGLPDCIAAGKEAAEQLLS 444 (444)
T ss_pred CCCCCchHHHHHHHHHHHHhhC
Confidence 9999999999999999998863
No 8
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=8.2e-22 Score=178.84 Aligned_cols=227 Identities=17% Similarity=0.136 Sum_probs=162.2
Q ss_pred eecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhh-cCCCCCCC
Q 024990 5 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPPLD 83 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~l-l~~~~~~~ 83 (259)
....+||++|+++|++++ +|++|++|.+|++ .+++|+|++.+|+.+ .||+||+| +|++.+... +...++
T Consensus 194 ~~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~VIva---~P~~~l~~~~i~f~p~-- 263 (435)
T PLN02268 194 GLMVRGYDPVINTLAKGL--DIRLNHRVTKIVR--RYNGVKVTVEDGTTF-VADAAIIA---VPLGVLKANIIKFEPE-- 263 (435)
T ss_pred eeecCCHHHHHHHHhccC--ceeCCCeeEEEEE--cCCcEEEEECCCcEE-EcCEEEEe---cCHHHHhcCcceecCC--
Confidence 446679999999999866 4699999999998 778899998888654 89999999 999887653 222222
Q ss_pred CCcchhHHHHhccCCCcceeEEEEeccCCCCC-CCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHh
Q 024990 84 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIA 162 (259)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
+++...++++.+.|.++.++++.|++++|. ..+.|...+......|.. +..+. .+...++++....++.....
T Consensus 264 --lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~-~~~~~---~g~~~l~~~~~g~~a~~~~~ 337 (435)
T PLN02268 264 --LPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFL-NLHKA---TGHPVLVYMPAGRLARDIEK 337 (435)
T ss_pred --CCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEE-ecccC---CCCCEEEEEeccHHHHHHHh
Confidence 566678889999999999999999998874 233443333222222322 22111 12346677777766665544
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCC------CCCcCCCC---CeeecCCCCEEEeecCC
Q 024990 163 QTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFP------AASIAKEE---RCLWDVKRRLAICGDFC 233 (259)
Q Consensus 163 ~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p------~~~~g~~~---~~~~~~~~~l~laGD~~ 233 (259)
. +++++.+.+++++.++++...+|....+++|...-. ...+|... +.+..+.++|+|||+++
T Consensus 338 ~---------~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~t 408 (435)
T PLN02268 338 L---------SDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEAT 408 (435)
T ss_pred C---------CHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccC
Confidence 4 578888999999998887666899999999983211 11222211 12334567899999987
Q ss_pred CC---CChhHHHHHHHHHHHHHHhhh
Q 024990 234 VS---PNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 234 ~g---~~ie~A~~SG~~aA~~l~~~l 256 (259)
.. ++||||++||++||++|+..|
T Consensus 409 s~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 409 SSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHhh
Confidence 64 589999999999999998765
No 9
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.89 E-value=1.2e-21 Score=185.95 Aligned_cols=229 Identities=14% Similarity=0.162 Sum_probs=161.8
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhh--hcCCCC
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD--VTGRPP 80 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~--ll~~~~ 80 (259)
+.|..++||++|+++|++.++ |++|++|.+|++ .+++|.|+ .+|+.+ .||+|||| +|.+.+.+ +... +
T Consensus 428 ~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~--~~dgV~V~-~~G~~~-~AD~VIvT---vPl~vLk~~~I~F~-P 497 (808)
T PLN02328 428 DHCFIPGGNDTFVRELAKDLP--IFYERTVESIRY--GVDGVIVY-AGGQEF-HGDMVLCT---VPLGVLKKGSIEFY-P 497 (808)
T ss_pred eEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEE--cCCeEEEE-eCCeEE-EcCEEEEC---CCHHHHhhcccccC-C
Confidence 367788999999999999987 599999999998 77889885 466654 89999999 99988763 2111 2
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCC--ccceeecCCCceE--EEEecCCCCCCCCCCceEEEEeCHHH
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSEVLS--WAHCDSSKPGRSANSERWVLHSTADY 156 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~g~~~~~~~~l~--~~~~~~~k~~~~~~~~~~~~~~~~~~ 156 (259)
+ +++...++++++.|.++.++++.|++++|... ..|+...+..... .++++.... . +...++.++.+.+
T Consensus 498 ~----LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~--~-G~~vLvafv~G~~ 570 (808)
T PLN02328 498 E----LPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSV--S-GGPLLIALVAGDA 570 (808)
T ss_pred C----CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCC--C-CCcEEEEEecChh
Confidence 2 56778889999999999999999999988532 3344433211111 223332221 1 2357777888777
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC----CCCCceEeEeeccccCCCC------CcCCCC---CeeecC-
Q 024990 157 ARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS----IPLPIFRKAHRWGSAFPAA------SIAKEE---RCLWDV- 222 (259)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~----~~~p~~~~~~rW~~a~p~~------~~g~~~---~~~~~~- 222 (259)
+...... +++++.+.+++.|.++++. .++|..+.+++|....+.+ .+|... ..+..+
T Consensus 571 A~~~e~l---------sdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv 641 (808)
T PLN02328 571 AVKFETL---------SPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESV 641 (808)
T ss_pred hHHHhcC---------CHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccC
Confidence 7765444 4677888888888887542 3578999999999443322 122111 112222
Q ss_pred -CCCEEEeecCCCC---CChhHHHHHHHHHHHHHHhhhc
Q 024990 223 -KRRLAICGDFCVS---PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 223 -~~~l~laGD~~~g---~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.++|+|||+++.. ++|+||+.||+++|++|+..++
T Consensus 642 ~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~ 680 (808)
T PLN02328 642 GDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVAR 680 (808)
T ss_pred CCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHh
Confidence 4689999998864 4899999999999999998653
No 10
>PLN02529 lysine-specific histone demethylase 1
Probab=99.88 E-value=1.5e-21 Score=184.33 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=160.3
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhh-cCCCCC
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPP 81 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~l-l~~~~~ 81 (259)
+.+...+||++|+++|+++++ |++|++|.+|++ ++++|+|++. ++.+ .||+|||| +|.+.+.+. +.-.|+
T Consensus 348 ~~~~i~GG~~~Li~aLA~~L~--IrLnt~V~~I~~--~~dGVtV~t~-~~~~-~AD~VIVT---VPlgVLk~~~I~F~Pp 418 (738)
T PLN02529 348 DHCFLAGGNWRLINALCEGVP--IFYGKTVDTIKY--GNDGVEVIAG-SQVF-QADMVLCT---VPLGVLKKRTIRFEPE 418 (738)
T ss_pred ceEEECCcHHHHHHHHHhcCC--EEcCCceeEEEE--cCCeEEEEEC-CEEE-EcCEEEEC---CCHHHHHhccccCCCC
Confidence 357789999999999999876 699999999998 7788999763 3343 89999999 999888743 221233
Q ss_pred CCCCcchhHHHHhccCCCcceeEEEEeccCCCCC--CCccceeecCC-C-ceEEEEecCCCCCCCCCCceEEEEeCHHHH
Q 024990 82 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDS-E-VLSWAHCDSSKPGRSANSERWVLHSTADYA 157 (259)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~g~~~~~~-~-~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 157 (259)
+++...++++++.|.++.++++.|++++|. .+..|+..... . ...+++++...+ ++...++.+...+++
T Consensus 419 ----LP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~---~ggpvLvafv~G~~A 491 (738)
T PLN02529 419 ----LPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTV---SGGPALVALVAGEAA 491 (738)
T ss_pred ----CCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCC---CCCCEEEEEECchhh
Confidence 566778899999999999999999999884 23444443211 1 111222232221 123467777777776
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC----CCCCceEeEeeccc--------cCCCCCcCCCC---Ceeec-
Q 024990 158 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS----IPLPIFRKAHRWGS--------AFPAASIAKEE---RCLWD- 221 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~----~~~p~~~~~~rW~~--------a~p~~~~g~~~---~~~~~- 221 (259)
...... +++++.+.++..++++++. .++|..+.+++|.. +.+. ++... ..+..
T Consensus 492 ~~le~l---------sdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~--~g~~~~d~~~La~p 560 (738)
T PLN02529 492 QRFENT---------DPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVR--VQSSGSDYDILAES 560 (738)
T ss_pred HHHhcC---------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCC--CCCchhHHHHHhCC
Confidence 654443 5678888888888887542 25788899999994 3322 11111 11122
Q ss_pred CCCCEEEeecCCCC---CChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVS---PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g---~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++|+||||++.. ++|+||++||++||++|++.+.
T Consensus 561 v~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 561 VSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVAR 599 (738)
T ss_pred CCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHh
Confidence 25799999998865 4899999999999999998763
No 11
>PLN03000 amine oxidase
Probab=99.87 E-value=6.3e-21 Score=181.22 Aligned_cols=230 Identities=13% Similarity=0.133 Sum_probs=162.4
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchh--hhcCCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR--DVTGRPPP 81 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~--~ll~~~~~ 81 (259)
.|..++||++|+++|++.++ |+++++|++|++ ++++|+|++.++ .+ .||+|||| +|...+. .+.-. |+
T Consensus 373 ~~~v~GG~~~LieaLa~~L~--I~Ln~~Vt~I~~--~~dgV~V~~~~~-~~-~AD~VIvT---VPlgVLk~~~I~F~-Pp 442 (881)
T PLN03000 373 HCFLPGGNGRLVQALAENVP--ILYEKTVQTIRY--GSNGVKVIAGNQ-VY-EGDMVLCT---VPLGVLKNGSIKFV-PE 442 (881)
T ss_pred eEEeCCCHHHHHHHHHhhCC--cccCCcEEEEEE--CCCeEEEEECCc-EE-EeceEEEc---CCHHHHhhCceeeC-CC
Confidence 56788999999999999986 699999999998 778999987544 43 89999999 9998876 22222 22
Q ss_pred CCCCcchhHHHHhccCCCcceeEEEEeccCCCCCC--CccceeecCCC--ceEEEEecCCCCCCCCCCceEEEEeCHHHH
Q 024990 82 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDSE--VLSWAHCDSSKPGRSANSERWVLHSTADYA 157 (259)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~g~~~~~~~--~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 157 (259)
+++...++++++.|....++++.|++++|.. ...|+...+.. ...+++++..+.. +...++.+...+.+
T Consensus 443 ----LP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~---G~pVLvafv~Gd~A 515 (881)
T PLN03000 443 ----LPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVA---GGPLLIALVAGEAA 515 (881)
T ss_pred ----CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCC---CCcEEEEEecCchh
Confidence 6677789999999999999999999999853 33454443211 1223333333211 13466666666555
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC----CCCCceEeEeeccccCCC------CCcCCCCC---eeecC--
Q 024990 158 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS----IPLPIFRKAHRWGSAFPA------ASIAKEER---CLWDV-- 222 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~----~~~p~~~~~~rW~~a~p~------~~~g~~~~---~~~~~-- 222 (259)
...... +++++.+.+++.++++++. .++|..+.+++|...-.. ..+|.... .+..+
T Consensus 516 ~~le~l---------SdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~ 586 (881)
T PLN03000 516 HKFETM---------PPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVG 586 (881)
T ss_pred HHhhcC---------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCC
Confidence 543333 5678888889999887642 357899999999853221 11221111 11222
Q ss_pred CCCEEEeecCCCC---CChhHHHHHHHHHHHHHHhhhccC
Q 024990 223 KRRLAICGDFCVS---PNVEGAILSGLDAASKLTEILSCL 259 (259)
Q Consensus 223 ~~~l~laGD~~~g---~~ie~A~~SG~~aA~~l~~~l~~~ 259 (259)
.++|+|||+.+.. ++|+||+.||++||++|+..+.|+
T Consensus 587 ~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~ 626 (881)
T PLN03000 587 DGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKAR 626 (881)
T ss_pred CCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence 4689999987754 689999999999999999988763
No 12
>PRK07233 hypothetical protein; Provisional
Probab=99.85 E-value=6.8e-20 Score=165.82 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=158.0
Q ss_pred ceecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCC
Q 024990 4 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 80 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~ 80 (259)
.+.+++||++|+++|++.+ +++|+++++|.+|+. ++++|.+...+|+. ..+|+||+| +|++.+..+++.
T Consensus 190 ~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~~~~~~~~~~~~~~-~~ad~vI~a---~p~~~~~~ll~~-- 261 (434)
T PRK07233 190 LGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI--DGGGVTGVEVDGEE-EDFDAVIST---APPPILARLVPD-- 261 (434)
T ss_pred EeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE--cCCceEEEEeCCce-EECCEEEEC---CCHHHHHhhcCC--
Confidence 4567999999999998876 578999999999997 66777654456655 489999999 999999998854
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCC-CceEEEEecCCC-CCCC-CCCceEEE--EeCHH
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS-EVLSWAHCDSSK-PGRS-ANSERWVL--HSTAD 155 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~-~~l~~~~~~~~k-~~~~-~~~~~~~~--~~~~~ 155 (259)
..+...+.+..+.|.+++++++.++++... ...+.+... ....++.+.+.. +... ++...+++ +...+
T Consensus 262 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~ 334 (434)
T PRK07233 262 -----LPADVLARLRRIDYQGVVCMVLKLRRPLTD--YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD 334 (434)
T ss_pred -----CcHHHHhhhcccCccceEEEEEEecCCCCC--CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCC
Confidence 455666778889999999999999887531 111111121 123333333322 3322 22223222 22221
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC--CCCceEeEeeccccCCCCCcCCC--CCeeecCCCCEEEeec
Q 024990 156 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGD 231 (259)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~--~~p~~~~~~rW~~a~p~~~~g~~--~~~~~~~~~~l~laGD 231 (259)
- ..... +++++.+.+++.+.++++.. ..++...+.||+++.|.+.+|.. .+.+..+.++|++|||
T Consensus 335 ~--~~~~~---------~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~ 403 (434)
T PRK07233 335 H--PLWQM---------SDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGM 403 (434)
T ss_pred C--hhhcC---------CHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCC
Confidence 1 12222 46788899999999887643 24677889999999998876632 2233445689999999
Q ss_pred CC---CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 232 FC---VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 232 ~~---~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+. .+++|++|++||++||++|++.+.
T Consensus 404 ~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 404 SQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 63 234899999999999999998875
No 13
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.85 E-value=1.8e-20 Score=168.08 Aligned_cols=223 Identities=21% Similarity=0.310 Sum_probs=154.3
Q ss_pred CCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhh--hcCCCCCCCCC
Q 024990 8 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD--VTGRPPPLDLT 85 (259)
Q Consensus 8 ~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~--ll~~~~~~~~~ 85 (259)
.+++..+.+.+++..+.+|++|++|++|+. ++++++|.+.+|+.+ .||+||+| +|.+.+.. +.+.
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~--~~~~v~v~~~~g~~~-~ad~VI~a---~p~~~l~~i~~~p~------- 274 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIER--EDGGVTVTTEDGETI-EADAVISA---VPPSVLKNILLLPP------- 274 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEE--ESSEEEEEETTSSEE-EESEEEE----S-HHHHHTSEEEST-------
T ss_pred ccchhHHHHHHHhhcCceeecCCcceeccc--cccccccccccceEE-ecceeeec---Cchhhhhhhhhccc-------
Confidence 445555666666656778999999999998 678999999999754 89999999 99999885 3332
Q ss_pred cchhHHHHhccCCCcceeEEEEeccCCCCCC--CccceeecCC-CceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHh
Q 024990 86 FAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS-EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIA 162 (259)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~g~~~~~~-~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
+.....++++.+.|.++.++++.|+.+++.. ...++...+. ....++...+..+++ ++...++......+......
T Consensus 275 l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 353 (450)
T PF01593_consen 275 LPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDD 353 (450)
T ss_dssp SHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTT
T ss_pred ccccccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCccc-ccCCcceeeeeccccchhcc
Confidence 4455678889999999999999999987743 2455555443 234444444444444 33345555555555433333
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHhcCC--CCCCCceEeEeeccc-cCCCCCcCCC---CC-----eeecCC-CCEEEee
Q 024990 163 QTGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWGS-AFPAASIAKE---ER-----CLWDVK-RRLAICG 230 (259)
Q Consensus 163 ~~~~~~~~~~~~e~v~~~l~~~~~~~~~--~~~~p~~~~~~rW~~-a~p~~~~g~~---~~-----~~~~~~-~~l~laG 230 (259)
. +++++.+.+++.++++++ ..++|....+++|.. ..+....... .. .+..+. ++|+|||
T Consensus 354 ~---------~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 424 (450)
T PF01593_consen 354 L---------SDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAG 424 (450)
T ss_dssp S---------CHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-S
T ss_pred c---------chhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEee
Confidence 3 678889999999988766 345777888999987 3333222211 11 112333 6999999
Q ss_pred cCCCCC---ChhHHHHHHHHHHHHHH
Q 024990 231 DFCVSP---NVEGAILSGLDAASKLT 253 (259)
Q Consensus 231 D~~~g~---~ie~A~~SG~~aA~~l~ 253 (259)
||+.++ ++|||+.||++||++|+
T Consensus 425 ~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 425 DWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp GGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999855 99999999999999986
No 14
>PLN02976 amine oxidase
Probab=99.84 E-value=2.5e-19 Score=175.31 Aligned_cols=232 Identities=15% Similarity=0.169 Sum_probs=159.6
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeec--------CCCceEEEccCCCccccccEEEecCCCCCCcchh-
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLE--------DKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR- 73 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~--------~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~- 73 (259)
..|..++||++|+++|++.++ |++|++|++|++.. ++++|.|++.+|+.+ .||+|||| +|...+.
T Consensus 927 ~~~rIkGGYqqLIeALAe~L~--IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetf-tADaVIVT---VPLGVLKa 1000 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGLD--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEF-LGDAVLIT---VPLGCLKA 1000 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhCC--eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEE-EeceEEEe---CCHHHhhh
Confidence 467889999999999999886 69999999999821 146799999999765 89999999 9987765
Q ss_pred -hhcCCCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCC--CccceeecCC--CceEEEEecCCCCCCCCCCceE
Q 024990 74 -DVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS--EVLSWAHCDSSKPGRSANSERW 148 (259)
Q Consensus 74 -~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~g~~~~~~--~~l~~~~~~~~k~~~~~~~~~~ 148 (259)
.+... || +++...++++.+.|....++++.|++++|.. .+.|....+. ....+.+|+...+. +...+
T Consensus 1001 g~I~Fs-PP----LPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ps---G~pVL 1072 (1713)
T PLN02976 1001 ETIKFS-PP----LPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTV---GAPVL 1072 (1713)
T ss_pred cccccC-Cc----ccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCC---CCCEE
Confidence 23222 33 5566678899999999999999999999853 3333322211 11234555543331 12355
Q ss_pred EEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCCceEeEeecccc---CCCC---CcCCCCC---
Q 024990 149 VLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSA---FPAA---SIAKEER--- 217 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~a---~p~~---~~g~~~~--- 217 (259)
+.+..+..+...... +++++.+.+++.|.++++. .+.|..+.+++|... .-.| .+|....
T Consensus 1073 Vafv~G~aAreiEsL---------SDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d 1143 (1713)
T PLN02976 1073 IALVVGKAAIDGQSM---------SSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYD 1143 (1713)
T ss_pred EEEeccHhHHHHhhC---------CHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHH
Confidence 555554444433222 5678888888999888764 368999999999742 2111 1221111
Q ss_pred eeecC-CCCEEEeecCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 024990 218 CLWDV-KRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 218 ~~~~~-~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.+..+ .++|+|||+.+. .++|+||+.||+++|++|+..+.
T Consensus 1144 ~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1144 ILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred HHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 11223 456999998653 36899999999999999998763
No 15
>PLN02676 polyamine oxidase
Probab=99.83 E-value=5e-19 Score=162.35 Aligned_cols=227 Identities=19% Similarity=0.197 Sum_probs=155.1
Q ss_pred CCCchHHHHHHhcCC---------CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhh-hcC
Q 024990 8 VPGMNSICKALCHQP---------GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTG 77 (259)
Q Consensus 8 ~~Gm~~l~~~La~~l---------~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~-ll~ 77 (259)
++|+++|+++|++.+ +.+|++|++|.+|++ ++++++|++.+|+.+ .+|+||+| +|...+.. .+.
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~--~~~gV~V~~~~G~~~-~a~~VIvt---vPl~vLk~~~I~ 293 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY--SKNGVTVKTEDGSVY-RAKYVIVS---VSLGVLQSDLIK 293 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE--cCCcEEEEECCCCEE-EeCEEEEc---cChHHhccCceE
Confidence 679999999999976 256999999999998 778999999999764 89999999 88877654 122
Q ss_pred CCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCC--ccceeecCCC---ceEEEEecCCCCCCCCCCceEEEEe
Q 024990 78 RPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSE---VLSWAHCDSSKPGRSANSERWVLHS 152 (259)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~g~~~~~~~---~l~~~~~~~~k~~~~~~~~~~~~~~ 152 (259)
..|+ +++...++++.+.|....++.+.|++++|... ..++...+.. ...|...+...+ +...+++..
T Consensus 294 F~P~----LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~ 365 (487)
T PLN02676 294 FKPP----LPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYP----GSNVLFVTV 365 (487)
T ss_pred EeCC----CCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCC----CCCEEEEEe
Confidence 2233 56666788999999999999999999988521 1122221110 011221121112 123555555
Q ss_pred CHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCC-CCCCCceEeEeeccccCCC------CCcCCCC---CeeecC
Q 024990 153 TADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGSAFPA------ASIAKEE---RCLWDV 222 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~-~~~~p~~~~~~rW~~a~p~------~~~g~~~---~~~~~~ 222 (259)
..+.+...-.. ++++..+.+++.+.++++ ..+.|+.+..++|...... .++|... ..+..+
T Consensus 366 ~g~~a~~~~~~---------s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P 436 (487)
T PLN02676 366 TDEESRRIEQQ---------PDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAP 436 (487)
T ss_pred chHHHHHHHhC---------CHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCC
Confidence 55545433222 567788888888888765 3467888999999753221 2222211 122345
Q ss_pred CCCEEEeecCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 024990 223 KRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 223 ~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.++|+|||+.+. .++|+||++||++||++|+..++
T Consensus 437 ~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 437 VGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred CCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 679999998765 36899999999999999998763
No 16
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.83 E-value=2.3e-19 Score=157.61 Aligned_cols=229 Identities=19% Similarity=0.217 Sum_probs=168.1
Q ss_pred ecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC-CCccccccEEEecCCCCCCcchhhhcCCCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDL 84 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~-G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~ 84 (259)
-..+||+.|+++.++.++..|.++++|.+|.+ ++++++|++.+ |+ . ++|.|||| +|...+.++.-.| +
T Consensus 203 ~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q--~~~gV~Vt~~~~~~-~-~ad~~i~t---iPl~~l~qI~f~P-~--- 271 (450)
T COG1231 203 QRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQ--DGDGVTVTADDVGQ-Y-VADYVLVT---IPLAILGQIDFAP-L--- 271 (450)
T ss_pred ccCccHHHHHHHHHHHhhceEEecCceeeEEE--cCCeEEEEeCCcce-E-EecEEEEe---cCHHHHhhcccCC-C---
Confidence 34499999999999999999999999999998 88999999988 54 3 79999999 8988877776653 2
Q ss_pred CcchhHHHHhccCCCcceeEEEEeccCCCCC-CC-ccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHh
Q 024990 85 TFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IP-VKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIA 162 (259)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~-~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
+++++.++++.+.|.++.+..+.|+.++|. .. +.|..+.+.+ +..+++++. +.... .-|++.+..++...+.
T Consensus 272 -l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~-~~~i~~~s~-~~~~G---~gVl~g~~~~g~~A~~ 345 (450)
T COG1231 272 -LPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLG-LGFISYPSA-PFADG---PGVLLGSYAFGDDALV 345 (450)
T ss_pred -CCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCC-cceEecCcc-ccCCC---ceEEEeeeecccccee
Confidence 678889999999999999999999999995 44 5666666655 556666655 33322 2344444444444333
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHhcCCC-CCCCceE-eEeeccccCCCC------CcCCC---CCeeecCCCCEEEee-
Q 024990 163 QTGLQKPSEATLKKVAEEMFQEFQGTGLS-IPLPIFR-KAHRWGSAFPAA------SIAKE---ERCLWDVKRRLAICG- 230 (259)
Q Consensus 163 ~~~~~~~~~~~~e~v~~~l~~~~~~~~~~-~~~p~~~-~~~rW~~a~p~~------~~g~~---~~~~~~~~~~l~laG- 230 (259)
.+.+ ++++.++.++..+.++++. ...+... ..++|......- ++|.. .+.+..+.++|++||
T Consensus 346 ~~~~------~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~Agt 419 (450)
T COG1231 346 IDAL------PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGT 419 (450)
T ss_pred EecC------CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeee
Confidence 3322 5677778888888888773 3344444 788997654322 12211 122345788999999
Q ss_pred cC--CCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 231 DF--CVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 231 D~--~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.+ ..++.+|||++||++||.+|...++
T Consensus 420 Ehas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 420 EHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 44 4578999999999999999998775
No 17
>PLN02568 polyamine oxidase
Probab=99.81 E-value=3.3e-18 Score=158.26 Aligned_cols=236 Identities=16% Similarity=0.171 Sum_probs=156.7
Q ss_pred ceecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhh------c
Q 024990 4 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV------T 76 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~l------l 76 (259)
.++.++|+++|+++|++.++ .+|++|++|.+|++ ++++|+|++.+|+.+ .||+||+| +|.+.+..- .
T Consensus 234 ~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~--~~~~v~V~~~dG~~~-~aD~VIvT---vPl~vL~~~~~~~~i~ 307 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEW--QDEPVKLHFADGSTM-TADHVIVT---VSLGVLKAGIGEDSGL 307 (539)
T ss_pred eEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEE--eCCeEEEEEcCCCEE-EcCEEEEc---CCHHHHhhccccccce
Confidence 56789999999999999995 56899999999998 777899999888764 89999999 999887642 1
Q ss_pred CCCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCC-----c--cceeecCCC-------ceEEEEecCCCCCCC
Q 024990 77 GRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP-----V--KGFSFQDSE-------VLSWAHCDSSKPGRS 142 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-----~--~g~~~~~~~-------~l~~~~~~~~k~~~~ 142 (259)
-. ++ +++...++++.+.|..+.++++.|++++|.-+ + .++...++. ...|+..-.......
T Consensus 308 F~-P~----LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (539)
T PLN02568 308 FS-PP----LPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIH 382 (539)
T ss_pred ec-CC----CCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccC
Confidence 21 22 56666889999999999999999999876311 1 111111100 001110000000001
Q ss_pred CCCceEEEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC-----------------------CCCceEe
Q 024990 143 ANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI-----------------------PLPIFRK 199 (259)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~-----------------------~~p~~~~ 199 (259)
.....++.....+.+...-.. +++++.+.++..|.++++.. +.|..+.
T Consensus 383 ~~~~vL~~~~~G~~A~~~e~l---------~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 453 (539)
T PLN02568 383 KNSSVLLSWFAGKEALELEKL---------SDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVL 453 (539)
T ss_pred CCCCEEEEEeccHHHHHHHcC---------CHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEE
Confidence 123466667666665543333 56788888888888876421 3578888
Q ss_pred EeeccccCCC------CCcCCCC---CeeecC-------------CCCEEEeecCCCC---CChhHHHHHHHHHHHHHHh
Q 024990 200 AHRWGSAFPA------ASIAKEE---RCLWDV-------------KRRLAICGDFCVS---PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 200 ~~rW~~a~p~------~~~g~~~---~~~~~~-------------~~~l~laGD~~~g---~~ie~A~~SG~~aA~~l~~ 254 (259)
+++|...... .++|... ..+..+ .++|+|||+.+.. ++|+||++||+++|++|++
T Consensus 454 ~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~ 533 (539)
T PLN02568 454 KSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQ 533 (539)
T ss_pred eCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHH
Confidence 9999742211 1122111 011111 2379999987653 5899999999999999999
Q ss_pred hhccC
Q 024990 255 ILSCL 259 (259)
Q Consensus 255 ~l~~~ 259 (259)
..+|.
T Consensus 534 ~~~~~ 538 (539)
T PLN02568 534 HYKCV 538 (539)
T ss_pred HhccC
Confidence 88874
No 18
>PLN02612 phytoene desaturase
Probab=99.79 E-value=7.6e-18 Score=157.22 Aligned_cols=223 Identities=14% Similarity=0.127 Sum_probs=139.4
Q ss_pred hHHHHHHhcC---CCCeeEcceEEEEEEeecCCCce--EEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCCCc
Q 024990 12 NSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLW--SVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTF 86 (259)
Q Consensus 12 ~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~~--~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~~ 86 (259)
..|++.|++. ++++|++|++|.+|+. +++++ .+.+.+|+.+ .+|+||+| +|+..+..|++... .
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~-~ad~VI~a---~p~~~l~~Ll~~~~-----~ 376 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVV-EGDVYVSA---TPVDILKLLLPDQW-----K 376 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEE-ECCEEEEC---CCHHHHHHhCcchh-----c
Confidence 4566666553 6889999999999997 54553 3556678664 89999999 99988888876521 1
Q ss_pred chhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEec-CCC-CC-CCCCCceEEEEeCHHHHHHHHhh
Q 024990 87 APDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCD-SSK-PG-RSANSERWVLHSTADYARTVIAQ 163 (259)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~-~~k-~~-~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
...+.+.+.++.+.+++++++.|+++++. +..++++.+.+... ++.+ +.. +. ..++...+.+..+. +..+...
T Consensus 377 ~~~~~~~l~~l~~~~v~~v~l~~dr~~~~-~~~~~~~~~~~~~~-~~~d~S~~~~~~~~~~~~ll~~~~~~--a~~~~~~ 452 (567)
T PLN02612 377 EIPYFKKLDKLVGVPVINVHIWFDRKLKN-TYDHLLFSRSPLLS-VYADMSTTCKEYYDPNKSMLELVFAP--AEEWISR 452 (567)
T ss_pred CcHHHHHHHhcCCCCeEEEEEEECcccCC-CCCceeecCCCCce-eehhhhhcchhhcCCCCeEEEEEEEc--ChhhhcC
Confidence 22455667778899999999999998753 44444444333222 2222 111 11 11222222222211 2223332
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhcCCCCCCC-------ceEeEeeccccCCCCCcCCC--CCeeecCCCCEEEeecCCC
Q 024990 164 TGLQKPSEATLKKVAEEMFQEFQGTGLSIPLP-------IFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCV 234 (259)
Q Consensus 164 ~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p-------~~~~~~rW~~a~p~~~~g~~--~~~~~~~~~~l~laGD~~~ 234 (259)
+++++++.+++++.++++....+ ....+.+.+.+.....++.. .+.+..+.++|++||||+.
T Consensus 453 ---------sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~ 523 (567)
T PLN02612 453 ---------SDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTK 523 (567)
T ss_pred ---------CHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeeccee
Confidence 56899999999999987653221 22223334443322222221 2334456678999999996
Q ss_pred C---CChhHHHHHHHHHHHHHHhhhcc
Q 024990 235 S---PNVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 235 g---~~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
. ++||||++||++||++|++.++.
T Consensus 524 ~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 524 QKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4 68999999999999999988754
No 19
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.78 E-value=2e-18 Score=149.79 Aligned_cols=229 Identities=18% Similarity=0.232 Sum_probs=173.9
Q ss_pred eecCCCchHHHHHHhcCCC---CeeEcceEEEEEEeecCCCceEEEcc--CCCccccccEEEecCCCCCCcchhhhcCCC
Q 024990 5 YVGVPGMNSICKALCHQPG---VESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDVTGRP 79 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~---~~i~~~~~V~~I~~~~~~~~~~v~~~--~G~~~~~~d~VIla~~~~p~~~a~~ll~~~ 79 (259)
|-.++||+.|+++|-+.++ +.|.++-++..+... ..++|.+++. +|......+++..| +|+..++.+++.
T Consensus 242 ~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~-~~~~~~~tl~~~~~~~~~~~~~~~~t---~~~~k~a~ll~~- 316 (491)
T KOG1276|consen 242 FSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKS-RSGNWSLTLVDHSGTQRVVVSYDAAT---LPAVKLAKLLRG- 316 (491)
T ss_pred hhhhhhHhHhHHHHHHHhcccchhhhccccccccccc-ccCCceeEeEcCCCceeeeccccccc---cchHHhhhhccc-
Confidence 4468999999999999986 456788888888763 4567988765 44433467777778 999999999987
Q ss_pred CCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCcccee--ec--CC---CceEEEEecCCC-CCCCCCCceEEEE
Q 024990 80 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFS--FQ--DS---EVLSWAHCDSSK-PGRSANSERWVLH 151 (259)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~--~~---~~l~~~~~~~~k-~~~~~~~~~~~~~ 151 (259)
..+.+..+|.++.|.++++|.+.|+.+..+.|..||+ ++ +. +.+. +++++.. |.+++ .+.++++
T Consensus 317 ------~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifdS~~Fp~~~~-s~~vtvm 388 (491)
T KOG1276|consen 317 ------LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFDSMLFPDRSP-SPKVTVM 388 (491)
T ss_pred ------cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEeecccCCCCCC-CceEEEE
Confidence 6778889999999999999999999863345666654 55 21 2455 4455555 66665 3478888
Q ss_pred eCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCC------eeec-CCC
Q 024990 152 STADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER------CLWD-VKR 224 (259)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~------~~~~-~~~ 224 (259)
+...|.. +.... .-+.|++++.+..+++++++...+|....+|-|+.++|+|..||.+- .+.+ ...
T Consensus 389 ~gg~~~~-n~~~~------~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~ 461 (491)
T KOG1276|consen 389 MGGGGST-NTSLA------VPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGL 461 (491)
T ss_pred ecccccc-cCcCC------CCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCC
Confidence 8777766 22111 12678899999999999887777899999999999999999998321 1222 346
Q ss_pred CEEEeecCCCCCChhHHHHHHHHHHHHHH
Q 024990 225 RLAICGDFCVSPNVEGAILSGLDAASKLT 253 (259)
Q Consensus 225 ~l~laGD~~~g~~ie~A~~SG~~aA~~l~ 253 (259)
+|++||.|+.|.++.+||.||+++|.+++
T Consensus 462 ~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 462 GLFLGGNHYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred ceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence 99999999999999999999999998765
No 20
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.77 E-value=1e-17 Score=153.39 Aligned_cols=217 Identities=11% Similarity=0.094 Sum_probs=139.0
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCC--CceE-E---EccCC---CccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWS-V---SGLDG---QSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~--~~~~-v---~~~~G---~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
+.++++|.+ .+++|+++++|++|+. ++ ++|+ + ...+| +. ..+|+||+| +|++.+.+|++...
T Consensus 223 ~pl~~~L~~-~Gg~i~~~~~V~~I~~--~~~~~~~~~v~~v~~~~g~~~~~-~~aD~VVlA---~p~~~~~~Ll~~~~-- 293 (474)
T TIGR02732 223 KPILEYIEA-RGGKFHLRHKVREIKY--EKSSDGSTRVTGLIMSKPEGKKV-IKADAYVAA---CDVPGIKRLLPQEW-- 293 (474)
T ss_pred HHHHHHHHH-CCCEEECCCEEEEEEE--ecCCCCceeEEEEEEecCCcceE-EECCEEEEC---CChHHHHhhCChhh--
Confidence 447777776 6789999999999997 43 3442 3 24333 33 379999999 99999999998621
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCCCC-------------ccceeecCCCceEEEEe-c-C--CCCCCC-CC
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP-------------VKGFSFQDSEVLSWAHC-D-S--SKPGRS-AN 144 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-------------~~g~~~~~~~~l~~~~~-~-~--~k~~~~-~~ 144 (259)
-.....+.+..+.|.||.++++.|+++..... ...+.+.++ ..|.+. + . +...-. ++
T Consensus 294 ---~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 368 (474)
T TIGR02732 294 ---RQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTAD--ADFSCFADLALTSPDDYYKEG 368 (474)
T ss_pred ---hcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccC--ccceeeehhhccCHHHHhccC
Confidence 11235667888999999999999987543210 111101111 122220 1 0 110000 11
Q ss_pred Cce-EEEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCC--CCceEeEeeccccCCCCCcCCC--CCee
Q 024990 145 SER-WVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIP--LPIFRKAHRWGSAFPAASIAKE--ERCL 219 (259)
Q Consensus 145 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~--~p~~~~~~rW~~a~p~~~~g~~--~~~~ 219 (259)
... +-+.++.. ..+.+. +++++.+..+++++++++... .+...++.|.+.+.+...+|.. .|..
T Consensus 369 ~~~~l~~~~~~~--~~~~~~---------~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~ 437 (474)
T TIGR02732 369 QGSLLQCVLTPG--DPWMPE---------SNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQ 437 (474)
T ss_pred CCeEEEEEEeCh--hhhcCC---------CHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCC
Confidence 112 22223222 223333 578999999999998876533 3555568888888877666653 2444
Q ss_pred ecCCCCEEEeecCCCC---CChhHHHHHHHHHHHHHH
Q 024990 220 WDVKRRLAICGDFCVS---PNVEGAILSGLDAASKLT 253 (259)
Q Consensus 220 ~~~~~~l~laGD~~~g---~~ie~A~~SG~~aA~~l~ 253 (259)
.++.++||+||||+.. .+||+|++||++||+.|+
T Consensus 438 ~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 438 KTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 5667899999999988 699999999999999874
No 21
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.75 E-value=1e-16 Score=146.24 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=134.3
Q ss_pred chHHHHHHhcC---CCCeeEcceEEEEEEeecCCCc-e-EEEccCCC-----ccccccEEEecCCCCCCcchhhhcCCCC
Q 024990 11 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-W-SVSGLDGQ-----SLGQFNGVVASDKNVVSPRFRDVTGRPP 80 (259)
Q Consensus 11 m~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~-~-~v~~~~G~-----~~~~~d~VIla~~~~p~~~a~~ll~~~~ 80 (259)
++.|++.|++. .+++|++|++|++|+. .+++ + .+++.+|+ . ..+|+||+| +|++.+.+||+...
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~--~~~~~v~~v~~~~~~~~~~~~-~~a~~VI~a---~p~~~~~~lL~~~~ 285 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL--NEDGSVKHFVLADGEGQRRFE-VTADAYVSA---MPVDIFKLLLPQPW 285 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE--CCCCCEEEEEEecCCCCceeE-EECCEEEEc---CCHHHHHhhCchhh
Confidence 44555555544 4789999999999986 3333 2 23343433 3 379999999 99999989986410
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCC--CCCCCCCceEEEEeCHHHHH
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK--PGRSANSERWVLHSTADYAR 158 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k--~~~~~~~~~~~~~~~~~~~~ 158 (259)
....+.+.+..++|.++.++++.|+++++. ..++.+...+......+.+.. +...++...+.+..+.. .
T Consensus 286 -----~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~--~ 356 (453)
T TIGR02731 286 -----KQMPFFQKLNGLEGVPVINVHIWFDRKLTT--VDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPA--A 356 (453)
T ss_pred -----hcCHHHHHhhcCCCCcEEEEEEEEccccCC--CCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecCh--h
Confidence 123456677788899999999999998652 234444443322211111111 11222222222222221 2
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC---CCC---ceEeEeeccccCCCCCcCCC--CCeeecCCCCEEEee
Q 024990 159 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI---PLP---IFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICG 230 (259)
Q Consensus 159 ~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~---~~p---~~~~~~rW~~a~p~~~~g~~--~~~~~~~~~~l~laG 230 (259)
..... +++++.+.+++++.++++.. .++ +.+...+.+++.+...+|.. .+.+..+.++|++||
T Consensus 357 ~~~~~---------~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG 427 (453)
T TIGR02731 357 DWIGR---------SDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAG 427 (453)
T ss_pred hhhcC---------CHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEee
Confidence 22222 57888999999999887631 123 33444466677654434421 233445678999999
Q ss_pred cCCCC---CChhHHHHHHHHHHHHH
Q 024990 231 DFCVS---PNVEGAILSGLDAASKL 252 (259)
Q Consensus 231 D~~~g---~~ie~A~~SG~~aA~~l 252 (259)
||... ++||||++||++||++|
T Consensus 428 ~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 428 DYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred hhccCcccccHHHHHHHHHHHHHHh
Confidence 99853 59999999999999986
No 22
>PLN02487 zeta-carotene desaturase
Probab=99.72 E-value=2.9e-16 Score=145.72 Aligned_cols=230 Identities=10% Similarity=0.065 Sum_probs=146.3
Q ss_pred eecCCCchH-HHHHHhcCC---CCeeEcceEEEEEEeecCCCc----eEEEc---cCCCccccccEEEecCCCCCCcchh
Q 024990 5 YVGVPGMNS-ICKALCHQP---GVESKFGVGVGRFEWLEDKNL----WSVSG---LDGQSLGQFNGVVASDKNVVSPRFR 73 (259)
Q Consensus 5 ~~~~~Gm~~-l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~----~~v~~---~~G~~~~~~d~VIla~~~~p~~~a~ 73 (259)
+..++|+++ |++.+++.+ |++|+++++|.+|+...++++ +.|+. .+++. ..+|+||+| +|++.+.
T Consensus 287 ~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~-~~aD~VV~A---~p~~~~~ 362 (569)
T PLN02487 287 RMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEI-VKADAYVAA---CDVPGIK 362 (569)
T ss_pred eecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceE-EECCEEEEC---CCHHHHH
Confidence 456899995 888777654 789999999999998211233 23444 23333 379999999 9999999
Q ss_pred hhcCCCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCC----------Ccccee---ecCCCceEEEE--e---c
Q 024990 74 DVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI----------PVKGFS---FQDSEVLSWAH--C---D 135 (259)
Q Consensus 74 ~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~----------~~~g~~---~~~~~~l~~~~--~---~ 135 (259)
+|++...+ ..+ ..+.+..+.+.+|.++++.|+.+.... |..|+. ...+. .|.+ + .
T Consensus 363 ~Llp~~~~----~~~-~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~--~~~f~~di~l~ 435 (569)
T PLN02487 363 RLLPEQWR----EYE-FFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADA--DFSCFADLALT 435 (569)
T ss_pred HhCCchhh----ccH-HHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCC--CcceEeeeecC
Confidence 99986311 112 355778889999999999999864321 122211 00111 1222 1 1
Q ss_pred CC--CCCCCCCCceEEEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCC--CCceEeEeeccccCCCCC
Q 024990 136 SS--KPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIP--LPIFRKAHRWGSAFPAAS 211 (259)
Q Consensus 136 ~~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~--~p~~~~~~rW~~a~p~~~ 211 (259)
+. ..+... +..+-+..++. ..+... +++++++...+++.++++... .+.+.++-|.+.+.....
T Consensus 436 ~~~~~~~~~~-g~~l~~vis~a--~~~~~~---------~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~ 503 (569)
T PLN02487 436 SPEDYYKEGE-GSLIQAVLTPG--DPYMPL---------SNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREA 503 (569)
T ss_pred CHHHHcccCC-ceEEEEEEcCC--ccccCC---------CHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccC
Confidence 00 000111 22333333322 123333 678999999999998876543 345555666666665555
Q ss_pred cCCC--CCeeecCCCCEEEeecCCCCC---ChhHHHHHHHHHHHHHHhhhc
Q 024990 212 IAKE--ERCLWDVKRRLAICGDFCVSP---NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 212 ~g~~--~~~~~~~~~~l~laGD~~~g~---~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+|.. .|...++.+++++||||+.++ +||+|++||++||+.|++..+
T Consensus 504 pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 504 PGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred CCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 5532 245556678999999999764 899999999999999988643
No 23
>PRK07208 hypothetical protein; Provisional
Probab=99.71 E-value=2.8e-16 Score=144.37 Aligned_cols=229 Identities=14% Similarity=0.049 Sum_probs=150.5
Q ss_pred ecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceE--EEc--cCCCc-cccccEEEecCCCCCCcchhhhcC
Q 024990 6 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWS--VSG--LDGQS-LGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~--v~~--~~G~~-~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
.+++||++|++.|++.+ +++|++|++|.+|+. ++++|. +.. .+|+. ...+|+||+| +|++.+..++.
T Consensus 212 ~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~--~~~~~v~~~~~~~~~g~~~~~~ad~VI~a---~p~~~l~~~l~ 286 (479)
T PRK07208 212 YPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHH--DGDGRIAVVVVNDTDGTEETVTADQVISS---MPLRELVAALD 286 (479)
T ss_pred CCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEE--cCCcEEEEEEEEcCCCCEEEEEcCEEEEC---CCHHHHHHhcC
Confidence 35899999999998876 688999999999998 666653 332 24531 1379999999 99999998886
Q ss_pred CCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecC-CCceEEEEecCCC-CCCCCCCceEEEE--eC
Q 024990 78 RPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQD-SEVLSWAHCDSSK-PGRSANSERWVLH--ST 153 (259)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~-~~~l~~~~~~~~k-~~~~~~~~~~~~~--~~ 153 (259)
.+ ++++..+.++.+.|.++.++++.|+++.. .+.....+++ ......+...+.. +...|.+...++. ..
T Consensus 287 ~~------~~~~~~~~~~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~ 359 (479)
T PRK07208 287 PP------PPPEVRAAAAGLRYRDFITVGLLVKELNL-FPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYF 359 (479)
T ss_pred CC------CCHHHHHHHhCCCcceeEEEEEEecCCCC-CCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEE
Confidence 32 45677788889999999999999987643 2322222322 1111122111111 2223322212221 11
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC-CCCCceEeEeeccccCCCCCcCCCCC--e---eecCCCCEE
Q 024990 154 ADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS-IPLPIFRKAHRWGSAFPAASIAKEER--C---LWDVKRRLA 227 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~-~~~p~~~~~~rW~~a~p~~~~g~~~~--~---~~~~~~~l~ 227 (259)
.......... +++++++.+++.+.+++.. ...|...+++||+++.|++..++... . +.+..++|+
T Consensus 360 ~~~~~~~~~~---------~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~ 430 (479)
T PRK07208 360 CFEGDDLWNM---------SDEDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLH 430 (479)
T ss_pred ccCCCccccC---------CHHHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCce
Confidence 0001112222 4678888999999887432 34578889999999999998876321 1 224567999
Q ss_pred EeecCCC--CCChhHHHHHHHHHHHHHHhh
Q 024990 228 ICGDFCV--SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 228 laGD~~~--g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+||++.. ..++|+|+.||.++|+.|+..
T Consensus 431 laGr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 431 LVGRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred eeccccccccCChhHHHHHHHHHHHHHhcC
Confidence 9998543 258999999999999998764
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.49 E-value=9.2e-12 Score=114.91 Aligned_cols=231 Identities=15% Similarity=0.174 Sum_probs=135.9
Q ss_pred eecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCc--eEEEccCC-----CccccccEEEecCCCCCCcchhh
Q 024990 5 YVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNL--WSVSGLDG-----QSLGQFNGVVASDKNVVSPRFRD 74 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~--~~v~~~~G-----~~~~~~d~VIla~~~~p~~~a~~ 74 (259)
|.+++||++|+++|++.+ +++|+++++|++|.. ++++ |.+.. +| +. ..+|+||+| +|+..+.+
T Consensus 225 ~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~--~~~~~~gv~~~-~~~~~~~~~-~~ad~VI~~---~~~~~~~~ 297 (492)
T TIGR02733 225 WHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT--KGGRAGWVVVV-DSRKQEDLN-VKADDVVAN---LPPQSLLE 297 (492)
T ss_pred eeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE--eCCeEEEEEEe-cCCCCceEE-EECCEEEEC---CCHHHHHH
Confidence 668999999999999887 789999999999997 4442 33322 32 33 379999999 99999989
Q ss_pred hcCCCCCCCCCcchhHHHHhccCCCcc-eeEEEEeccCCCCCC---CccceeecCCCceEEEEecCCCCCCCCCC-ceEE
Q 024990 75 VTGRPPPLDLTFAPDLAVKLEEIPVNP-CFALMLAFSEPLSSI---PVKGFSFQDSEVLSWAHCDSSKPGRSANS-ERWV 149 (259)
Q Consensus 75 ll~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~---~~~g~~~~~~~~l~~~~~~~~k~~~~~~~-~~~~ 149 (259)
|++. ++ +.++..+.+++++|++ .+++++++++..... +...+.......+ ++...+..+..+|.+ ..++
T Consensus 298 ll~~-~~----~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~aP~G~~~l~ 371 (492)
T TIGR02733 298 LLGP-LG----LPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSL-FVSISQEGDGRAPQGEATLI 371 (492)
T ss_pred hcCc-cc----CCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceE-EEEeCCccccCCCCCceEEE
Confidence 8864 22 4556777788888887 457889997632111 1111222222211 233322334555533 3443
Q ss_pred EEeCHHHHH--H--HHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCC-CceEeE---eeccc--cCCCCCc-CCC---
Q 024990 150 LHSTADYAR--T--VIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPL-PIFRKA---HRWGS--AFPAASI-AKE--- 215 (259)
Q Consensus 150 ~~~~~~~~~--~--~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~-p~~~~~---~rW~~--a~p~~~~-g~~--- 215 (259)
+.....+.. . -.+. ++..+++.+.+++.+++.++.+.+ .+...+ ..|.. ..+.-.. |..
T Consensus 372 ~~~~~~~~~~~~~~~~~y-------~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~ 444 (492)
T TIGR02733 372 ASSFTDTNDWSSLDEEDY-------TAKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRP 444 (492)
T ss_pred EEcCCCHHHHcCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCc
Confidence 333211211 0 0000 013466778888888776655432 222221 12221 1111000 000
Q ss_pred ------CCeeecCCCCEEEeecCCC-CCChhHHHHHHHHHHHHHHhh
Q 024990 216 ------ERCLWDVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 216 ------~~~~~~~~~~l~laGD~~~-g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.+...++-++||+||+++. |+++.+|+.||+.+|+.|++.
T Consensus 445 ~q~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 445 STFGPFGLSSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred cccCCcCCCCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 0011245679999999986 469999999999999999753
No 25
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=1.9e-12 Score=118.49 Aligned_cols=228 Identities=18% Similarity=0.244 Sum_probs=150.9
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecCCCCCCcchhh--hcCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRD--VTGRPP 80 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~--ll~~~~ 80 (259)
+....+|+..+...|++++ +|+++.+|..|.+ .+++ ..++..+|+.+ .+|+||+| +|.+.+.. +... |
T Consensus 211 ~~~~~~G~~~v~~~la~~l--~I~~~~~v~~i~~--~~~~~~~~~~~~~~~~-~~d~vvvt---~pl~vLk~~~i~F~-P 281 (501)
T KOG0029|consen 211 HLLMKGGYEPVVNSLAEGL--DIHLNKRVRKIKY--GDDGAVKVTVETGDGY-EADAVVVT---VPLGVLKSGLIEFS-P 281 (501)
T ss_pred hhHhhCCccHHHhhcCCCc--ceeeceeeEEEEE--ecCCceEEEEECCCee-EeeEEEEE---ccHHHhccCceeeC-C
Confidence 3567899999999999955 5599999999998 4444 23443344333 89999999 88887665 2222 3
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCC--CCccceeecCCCceEE--EEecCCCCCCCCCCceEEEEeCHHH
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSEVLSW--AHCDSSKPGRSANSERWVLHSTADY 156 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~g~~~~~~~~l~~--~~~~~~k~~~~~~~~~~~~~~~~~~ 156 (259)
| +......+++.+.+....++.+.|+..+|+ ..+.|.. +......+ .+++. ++-- ..+.+++....+-
T Consensus 282 ~----Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~-~~~~~~~~~~~f~~~-~~~~--~~~~l~~~~~~~~ 353 (501)
T KOG0029|consen 282 P----LPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIV-PETSVLRGLFTFYDC-KPVA--GHPVLMSVVVGEA 353 (501)
T ss_pred C----CcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEc-cccccccchhhhhhc-CccC--CCCeEEEEehhhh
Confidence 3 456678899999999999999999999995 2233322 22222233 22332 2211 1234555555443
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCC--CCCCCceEeEeeccccCCC------CCcCCCCCe---ee-cCCC
Q 024990 157 ARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWGSAFPA------ASIAKEERC---LW-DVKR 224 (259)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~--~~~~p~~~~~~rW~~a~p~------~~~g~~~~~---~~-~~~~ 224 (259)
+...... +++++...+...++.+++ ..+.|....+.||...... ...+..... +. ....
T Consensus 354 a~~~~~~---------~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~ 424 (501)
T KOG0029|consen 354 AERVETL---------SDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKN 424 (501)
T ss_pred hHHHhcC---------CHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccC
Confidence 4333333 567888888888888876 5678999999999854322 111111111 11 2344
Q ss_pred CEEEeecCCCC---CChhHHHHHHHHHHHHHHhhhc
Q 024990 225 RLAICGDFCVS---PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 225 ~l~laGD~~~g---~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
++|+||+++.. ++|+||+.||.++|..|+..+.
T Consensus 425 ~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 425 RVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred cEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 69999998753 6999999999999999987654
No 26
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.35 E-value=1.4e-11 Score=108.98 Aligned_cols=231 Identities=17% Similarity=0.195 Sum_probs=144.5
Q ss_pred ecCCCchHHHHHHhcCCC-Ce--------eEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhh--
Q 024990 6 VGVPGMNSICKALCHQPG-VE--------SKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-- 74 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~-~~--------i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~-- 74 (259)
+.+.|...+.+.|++.+. .. ++++++|..|++. ..+.+.|++.||+++ .||+|||| ++--...+
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~v~l~c~dg~v~-~adhVIvT---vsLGvLk~~h 291 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGEVKLRCSDGEVF-HADHVIVT---VSLGVLKEQH 291 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCcEEEEEeCCcEE-eccEEEEE---eechhhhhhh
Confidence 345678899999988664 33 4445999999982 346689999999985 89999999 77655544
Q ss_pred --hcCCCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCC-CC-CCCC---Cce
Q 024990 75 --VTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK-PG-RSAN---SER 147 (259)
Q Consensus 75 --ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k-~~-~~~~---~~~ 147 (259)
++. || ++.+-.++++.+.+..+-++.+.|++|+|...+.++.. + |...+ .. |... ...
T Consensus 292 ~~lF~--P~----LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~--------l-w~~e~l~e~r~~~~~w~~~ 356 (498)
T KOG0685|consen 292 HKLFV--PP----LPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQL--------L-WLDEDLEELRSTLDAWEED 356 (498)
T ss_pred hhhcC--CC----CCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEE--------E-EecCcHHHHhhhhHHHHhh
Confidence 433 22 56677899999999999999999999988544544321 1 11111 00 0000 001
Q ss_pred EEEEeCHHHHHHHHhh----cCCCCCchhhHHHHHHHHHHHHHhcCC--CCCCCceEeEeeccccCC---------CCCc
Q 024990 148 WVLHSTADYARTVIAQ----TGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWGSAFP---------AASI 212 (259)
Q Consensus 148 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~v~~~l~~~~~~~~~--~~~~p~~~~~~rW~~a~p---------~~~~ 212 (259)
++++.--.|.+..+.. .......+-++|+|.+.+..-|++.++ ..|.|.....+.|-..-. ++..
T Consensus 357 ~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~ 436 (498)
T KOG0685|consen 357 IMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSD 436 (498)
T ss_pred ceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeecccc
Confidence 1111111122211110 000112234789999999888888654 567888888889963211 1111
Q ss_pred CC-----CCCee---ecCCCCEEEeecCCC---CCChhHHHHHHHHHHHHHHhhh
Q 024990 213 AK-----EERCL---WDVKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 213 g~-----~~~~~---~~~~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+. ..+.. .+..+.|.|||.... .+++.||++||++.|++|++.-
T Consensus 437 ~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y 491 (498)
T KOG0685|consen 437 GSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHY 491 (498)
T ss_pred ccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHH
Confidence 10 01111 135668999998765 4799999999999999998843
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.32 E-value=2.2e-10 Score=106.07 Aligned_cols=233 Identities=13% Similarity=0.082 Sum_probs=133.3
Q ss_pred ceecCCCchHHHHHHhcC---CCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecCCCCCCcchhh-hcCC
Q 024990 4 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGR 78 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~-ll~~ 78 (259)
.|.+.+||+.++++|++. .+++|+++++|.+|.. ++++ |.|.+++|+.+ .+|+||+| ++...+.. |++.
T Consensus 211 ~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~V~~~~g~~~-~ad~VI~a---~~~~~~~~~l~~~ 284 (502)
T TIGR02734 211 VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIET--EGGRATAVHLADGERL-DADAVVSN---ADLHHTYRRLLPN 284 (502)
T ss_pred EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEe--eCCEEEEEEECCCCEE-ECCEEEEC---CcHHHHHHHhcCc
Confidence 456789999999999875 4789999999999997 4444 67888888754 89999999 88877664 4433
Q ss_pred CCCCCCCcchhHHHHhccCCCc-ceeEEEEecc---CCCCCCCccceee-----------------cCCCceEEEEecCC
Q 024990 79 PPPLDLTFAPDLAVKLEEIPVN-PCFALMLAFS---EPLSSIPVKGFSF-----------------QDSEVLSWAHCDSS 137 (259)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~---~~~~~~~~~g~~~-----------------~~~~~l~~~~~~~~ 137 (259)
.. ..+...+.++..+++ ++++++++++ +++...+...+.+ ++++ .-++..-+.
T Consensus 285 ~~-----~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p-~~~v~~~s~ 358 (502)
T TIGR02734 285 HP-----RRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDP-SLYLHRPTV 358 (502)
T ss_pred cc-----cccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCC-cEEEEcCCC
Confidence 10 112333445555644 7788888887 3322111111111 1122 223443333
Q ss_pred C-CCCCCCC-ceEEEEeCHHHH---HHHHhhcCCCCCchhhHHHHHHHHHHHHHhc-CCCCCC-CceEeE---eecc--c
Q 024990 138 K-PGRSANS-ERWVLHSTADYA---RTVIAQTGLQKPSEATLKKVAEEMFQEFQGT-GLSIPL-PIFRKA---HRWG--S 205 (259)
Q Consensus 138 k-~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~-~~~~~~-p~~~~~---~rW~--~ 205 (259)
+ |..+|.+ ..+.+.+...+. ....+ ...+++.+.+++.+++. ++.+.+ .+...+ ..|. +
T Consensus 359 ~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~---------~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~ 429 (502)
T TIGR02734 359 TDPSLAPPGCENLYVLAPVPHLGTADVDWS---------VEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRY 429 (502)
T ss_pred CCCCCCCCCCccEEEEEeCCCCCCCCCCcH---------HHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhc
Confidence 3 4455432 333333321111 10011 13466778888888775 554322 222211 1111 1
Q ss_pred cCCCCC-cCC---------CCCe-eecCCCCEEEeecCCC-CCChhHHHHHHHHHHHHHHhhhc
Q 024990 206 AFPAAS-IAK---------EERC-LWDVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 206 a~p~~~-~g~---------~~~~-~~~~~~~l~laGD~~~-g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..+.-. .|. ..+. ...+-++||+||+|+. |+++.+|+.||+.+|++|++.++
T Consensus 430 ~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 430 NAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred CCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 111100 000 0111 1235679999999987 46999999999999999998764
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.22 E-value=3.3e-09 Score=98.05 Aligned_cols=238 Identities=11% Similarity=0.091 Sum_probs=133.5
Q ss_pred eecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchh-hhcCCCC
Q 024990 5 YVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR-DVTGRPP 80 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~-~ll~~~~ 80 (259)
|.+.+|++.|+++|++.+ +++|+++++|.+|.. ++++.+.|.+.+|+++ ++|.||++ +.+..+. .|++..
T Consensus 222 ~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~-~ad~vV~a---~~~~~~~~~Ll~~~- 295 (493)
T TIGR02730 222 NYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKI-YAKRIVSN---ATRWDTFGKLLKAE- 295 (493)
T ss_pred ecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEE-EcCEEEEC---CChHHHHHHhCCcc-
Confidence 678899999999997664 689999999999987 1333456777788754 89999999 6555544 576541
Q ss_pred CCCCCcchhHHHHhccCCCc-ceeEEEEeccCCCC-C-CCccceeec------CCCceEEEEecCCC-CCCCCCC-ceEE
Q 024990 81 PLDLTFAPDLAVKLEEIPVN-PCFALMLAFSEPLS-S-IPVKGFSFQ------DSEVLSWAHCDSSK-PGRSANS-ERWV 149 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~-~-~~~~g~~~~------~~~~l~~~~~~~~k-~~~~~~~-~~~~ 149 (259)
. +++.....++.++++ +.++++++++.... . ....-+.+. .....-++..-+.. |.++|.+ ..+.
T Consensus 296 ~----~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~ 371 (493)
T TIGR02730 296 N----LPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIH 371 (493)
T ss_pred c----cchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEE
Confidence 1 333344444555555 58888999877421 0 010011111 11112234433333 5555543 3333
Q ss_pred EEeCHHHHHHHHhhcCCCCC-chhhHHHHHHHHHHHHHhcCCCCCC-CceEeE---eecc--ccCCCCCcCC--CC----
Q 024990 150 LHSTADYARTVIAQTGLQKP-SEATLKKVAEEMFQEFQGTGLSIPL-PIFRKA---HRWG--SAFPAASIAK--EE---- 216 (259)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~~~~~e~v~~~l~~~~~~~~~~~~~-p~~~~~---~rW~--~a~p~~~~g~--~~---- 216 (259)
++.. .+...+.. +... -++..+++.+.+++.+++.++.+.+ .+...+ ..|. ...+....|. ..
T Consensus 372 ~~~~-~~~~~w~~---~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~ 447 (493)
T TIGR02730 372 TFTP-SSMEDWQG---LSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPG 447 (493)
T ss_pred EecC-CChhhccC---CCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccc
Confidence 3332 11111000 0000 0113466778888888777654332 122211 1121 1111111111 00
Q ss_pred ----CeeecCCCCEEEeecCCC-CCChhHHHHHHHHHHHHHHhhh
Q 024990 217 ----RCLWDVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 217 ----~~~~~~~~~l~laGD~~~-g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+...++-++||+||+|.. |+++.+|+.||+.+|+.|+..+
T Consensus 448 ~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 448 LLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred cccCCCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 112345679999999986 5699999999999999998764
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.14 E-value=3.4e-11 Score=102.73 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=82.0
Q ss_pred eecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCC
Q 024990 5 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDL 84 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~ 84 (259)
++..+|-.+-+++|+.+++.+|+++++|.+|++ ..+|+.|...+|+. ..||+||+| +.++|++.||..+
T Consensus 213 rtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~r--lPdGv~l~~~~G~s-~rFD~vViA---th~dqAl~mL~e~----- 281 (447)
T COG2907 213 RTVAGGSRAYVQRLAADIRGRIETRTPVCRLRR--LPDGVVLVNADGES-RRFDAVVIA---THPDQALALLDEP----- 281 (447)
T ss_pred eEcccchHHHHHHHhccccceeecCCceeeeee--CCCceEEecCCCCc-cccceeeee---cChHHHHHhcCCC-----
Confidence 467899999999999999988999999999998 77888888888975 489999999 9999999999983
Q ss_pred CcchhHHHHhccCCCcceeEEEEecc
Q 024990 85 TFAPDLAVKLEEIPVNPCFALMLAFS 110 (259)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~l~~~ 110 (259)
.|+..+.+..+.|+...+++....
T Consensus 282 --sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 282 --SPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred --CHHHHHHHHhhhhhhceeEEeecc
Confidence 567788999999999988876654
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=2.8e-05 Score=71.91 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=47.1
Q ss_pred ceecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 4 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
-|.+++||++|+++|++.+ |++|+++++|++|.. +++.+..+++.+|.. ..+|.||.+
T Consensus 216 ~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~-~~ad~vv~~ 276 (487)
T COG1233 216 VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGEN-IEADAVVSN 276 (487)
T ss_pred eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccce-eccceeEec
Confidence 3677899999999998754 789999999999997 233357888878833 489999999
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.88 E-value=0.0032 Score=56.14 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=37.4
Q ss_pred hHHHHHHhcC----CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQ----PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~----l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..|.+.|.+. .+++++++++|.+|+. ++++|+|+..+|+. ..+|.||.|
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~g~~-~~ad~vV~A 157 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIR--NQDYVRVTLDNGQQ-LRAKLLIAA 157 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--cCCeEEEEECCCCE-EEeeEEEEe
Confidence 3444444432 3678899999999997 67789898878865 489999999
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.79 E-value=0.0012 Score=58.98 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=52.0
Q ss_pred ecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecCCCCCCcchhhhcCC
Q 024990 6 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGR 78 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~ 78 (259)
.+.+||++++.++++.+ +.+|.++..|.+|-- ++++ +-|...||+++ .+..||- |.+|-....+|++.
T Consensus 258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Ill--d~gka~GV~L~dG~ev-~sk~VvS--NAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILL--DSGKAVGVRLADGTEV-RSKIVVS--NATPWDTFEKLLPG 329 (561)
T ss_pred CCCCChhHHHHHHHHHHHhccceeeehhhhhheec--cCCeEEEEEecCCcEE-Eeeeeec--CCchHHHHHHhCCC
Confidence 46899999999999876 579999999999986 4443 34677899875 5544443 33777778899886
No 33
>PRK09126 hypothetical protein; Provisional
Probab=97.58 E-value=0.011 Score=52.78 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=37.7
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|.+.+.+..+++|+++++|.+++. ++++|.|+.++|+.+ .+|.||.|+
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRT--DDDGAQVTLANGRRL-TARLLVAAD 163 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEE--cCCeEEEEEcCCCEE-EeCEEEEeC
Confidence 344455555789999999999987 667888888888654 899999993
No 34
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.52 E-value=0.012 Score=52.64 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.|.+++.+.-++. ++++.|.+++. ++++|.|+.++|+.+ .+|.||.|+
T Consensus 116 ~L~~~~~~~~~~~-~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (388)
T PRK07494 116 ALEARVAELPNIT-RFGDEAESVRP--REDEVTVTLADGTTL-SARLVVGAD 163 (388)
T ss_pred HHHHHHhcCCCcE-EECCeeEEEEE--cCCeEEEEECCCCEE-EEeEEEEec
Confidence 3444444322344 88999999997 778899988888654 899999993
No 35
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.49 E-value=0.0012 Score=58.74 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=48.5
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCc---eEEEccC--CCccccccEEEecCCCCCCcch
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLD--GQSLGQFNGVVASDKNVVSPRF 72 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~--G~~~~~~d~VIla~~~~p~~~a 72 (259)
..|-.++|...+++.|.+..++++ ++++|++|... .+++ |.|+..+ +.....||.||+| +|-.+.
T Consensus 119 gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~-~~~~~~~y~v~~~~~~~~~~~~yD~VVIA---tPl~~~ 188 (368)
T PF07156_consen 119 GLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRR-SSDGYSLYEVTYKSSSGTESDEYDIVVIA---TPLQQS 188 (368)
T ss_pred CceEecCCHHHHHHHHHHHccCcE-ecceeEEEEec-cCCCceeEEEEEecCCCCccccCCEEEEC---CCcccc
Confidence 458889999999999999999999 99999999431 2333 5665443 2223368999999 777543
No 36
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.40 E-value=0.034 Score=50.10 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.|.+++.+..+++|+++++|.+|+. +++++.|+.++|+.+ ++|.||.|+
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~lvIgAD 164 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAV--GESEAWLTLDNGQAL-TAKLVVGAD 164 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEe--eCCeEEEEECCCCEE-EeCEEEEeC
Confidence 3444444434688999999999987 677888888888764 899999994
No 37
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.36 E-value=0.046 Score=48.51 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=32.5
Q ss_pred CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 24 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++|++++.|.+|+. ++++|.++..+|+.+ .+|.||.|+
T Consensus 122 ~~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~~~~vi~ad 159 (385)
T TIGR01988 122 VTLLCPARVVELPR--HSDHVELTLDDGQQL-RARLLVGAD 159 (385)
T ss_pred cEEecCCeEEEEEe--cCCeeEEEECCCCEE-EeeEEEEeC
Confidence 88999999999997 677888888888754 899999883
No 38
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.33 E-value=0.064 Score=47.91 Aligned_cols=48 Identities=27% Similarity=0.257 Sum_probs=37.3
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|.+.+.+..+++|+++++|.+|+. ++++|.|++++|..+ .+|.||.|+
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 165 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVER--TQGSVRVTLDDGETL-TGRLLVAAD 165 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 444444445688999999999987 677899988788653 899999993
No 39
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.20 E-value=0.1 Score=46.96 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
.|.+++.+ .+++|+++++|.+|+. ++++|.|+..+|+.+ ++|.||.|+ -..+..++++.
T Consensus 117 ~L~~~~~~-~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vVgAd--G~~S~vR~~lg 175 (405)
T PRK05714 117 ALLERLHD-SDIGLLANARLEQMRR--SGDDWLLTLADGRQL-RAPLVVAAD--GANSAVRRLAG 175 (405)
T ss_pred HHHHHHhc-CCCEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec--CCCchhHHhcC
Confidence 33444433 4788999999999997 677899988888654 899999994 23444555554
No 40
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.14 E-value=0.11 Score=46.31 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=36.9
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|.+++.+..++++++++.|.+++. ++++|.|+.++|+.+ ++|.||.|+
T Consensus 118 L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 165 (391)
T PRK08020 118 LWQALEAHPNVTLRCPASLQALQR--DDDGWELTLADGEEI-QAKLVIGAD 165 (391)
T ss_pred HHHHHHcCCCcEEEcCCeeEEEEE--cCCeEEEEECCCCEE-EeCEEEEeC
Confidence 344444333788899999999987 677899988888654 899999993
No 41
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.10 E-value=0.098 Score=46.82 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+++|++++.|.+|+. ++++|.|+.++|+.+ .+|.||.|+
T Consensus 126 ~gv~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vV~Ad 165 (392)
T PRK08773 126 AGVQLHCPARVVALEQ--DADRVRLRLDDGRRL-EAALAIAAD 165 (392)
T ss_pred CCCEEEcCCeEEEEEe--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 4789999999999998 677898888788654 899999993
No 42
>PRK07190 hypothetical protein; Provisional
Probab=97.04 E-value=0.076 Score=49.22 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=34.5
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+.++++|++++.|..|+. +++++.++..+|+.+ .++.||.|+
T Consensus 120 ~~~Gv~v~~~~~v~~l~~--~~~~v~v~~~~g~~v-~a~~vVgAD 161 (487)
T PRK07190 120 KEAGAAVKRNTSVVNIEL--NQAGCLTTLSNGERI-QSRYVIGAD 161 (487)
T ss_pred HHCCCEEEeCCEEEEEEE--cCCeeEEEECCCcEE-EeCEEEECC
Confidence 346889999999999998 777888877777654 899999993
No 43
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.99 E-value=0.1 Score=46.84 Aligned_cols=47 Identities=28% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc-CCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-~G~~~~~~d~VIla~ 64 (259)
-+++.+.-++++++++.|..++. +++++.++.. +|+. +.+|.||-|+
T Consensus 111 ~~~~~~~~~v~~~~~~~v~~~~~--~~~~v~v~l~~dG~~-~~a~llVgAD 158 (387)
T COG0654 111 LEAARALPNVTLRFGAEVEAVEQ--DGDGVTVTLSFDGET-LDADLLVGAD 158 (387)
T ss_pred HHHHhhCCCcEEEcCceEEEEEE--cCCceEEEEcCCCcE-EecCEEEECC
Confidence 33333333479999999999998 7788888887 8885 4899999983
No 44
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.97 E-value=0.2 Score=44.85 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=33.9
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+++|+++++|.+|+. ++++|.|+..+|+.+ .+|.||.|+
T Consensus 124 ~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vI~Ad 163 (403)
T PRK07333 124 LGIDLREATSVTDFET--RDEGVTVTLSDGSVL-EARLLVAAD 163 (403)
T ss_pred CCCEEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEcC
Confidence 4789999999999998 777898888888654 899999993
No 45
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.96 E-value=0.26 Score=44.09 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=37.8
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|.+++.+..+++|++++.|.+++. ++++++|+.++|..+ ++|.||.|+
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~~~lvIgAD 163 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEF--SAEGNRVTLESGAEI-EAKWVIGAD 163 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEE--cCCeEEEEECCCCEE-EeeEEEEec
Confidence 334444444688999999999998 677889998888764 899999994
No 46
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.95 E-value=0.0011 Score=53.54 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=37.6
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
....+.+++..+.+|++++.|.+|++ ++++|.|++.+|..+ .+|+||+|
T Consensus 85 ~~yl~~~~~~~~l~i~~~~~V~~v~~--~~~~w~v~~~~~~~~-~a~~VVlA 133 (203)
T PF13738_consen 85 LDYLQEYAERFGLEIRFNTRVESVRR--DGDGWTVTTRDGRTI-RADRVVLA 133 (203)
T ss_dssp HHHHHHHHHHTTGGEETS--EEEEEE--ETTTEEEEETTS-EE-EEEEEEE-
T ss_pred HHHHHHHHhhcCcccccCCEEEEEEE--eccEEEEEEEeccee-eeeeEEEe
Confidence 34556677777888999999999999 677899999998554 79999999
No 47
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.83 E-value=0.32 Score=43.82 Aligned_cols=40 Identities=25% Similarity=0.110 Sum_probs=30.6
Q ss_pred CCeeEcceEEEEEEeecCCCceEEEccC-C-CccccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLWSVSGLD-G-QSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~~v~~~~-G-~~~~~~d~VIla~ 64 (259)
+++|+++++|.+|+. +++++.|+..+ + +...++|.||.|+
T Consensus 136 ~v~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~adlvIgAD 177 (415)
T PRK07364 136 NITWLCPAEVVSVEY--QQDAATVTLEIEGKQQTLQSKLVVAAD 177 (415)
T ss_pred CcEEEcCCeeEEEEe--cCCeeEEEEccCCcceEEeeeEEEEeC
Confidence 688999999999987 66788877653 2 2224899999994
No 48
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.83 E-value=0.0025 Score=58.19 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=46.1
Q ss_pred eecCCCchHHHHHHh---cCCCCeeEcceEEEEEEeecCCCc--eEEEccCCCccccccEEEec
Q 024990 5 YVGVPGMNSICKALC---HQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La---~~l~~~i~~~~~V~~I~~~~~~~~--~~v~~~~G~~~~~~d~VIla 63 (259)
..+..||+.|+++|+ +..|.+|+++++|.+|+. ++++ +.|++.+|+.+ .+++||+.
T Consensus 225 ~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i-~a~~VV~~ 285 (443)
T PTZ00363 225 IYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVA-KCKLVICD 285 (443)
T ss_pred eeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEE-ECCEEEEC
Confidence 345799999999998 556889999999999997 4433 67888899764 89999998
No 49
>PRK08013 oxidoreductase; Provisional
Probab=96.73 E-value=0.41 Score=43.02 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|.+++.+.-+++|++++.|.+|+. +++++.|+..+|+.+ ++|.||-|+
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~a~lvVgAD 164 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAW--GENEAFLTLKDGSML-TARLVVGAD 164 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEe--cCCeEEEEEcCCCEE-EeeEEEEeC
Confidence 333433323688999999999997 677888888888764 899999883
No 50
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.68 E-value=0.052 Score=49.42 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+....++..+++|+.+++|.+|.. +++++.+...+|..+ .+|.||+|+
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~--~~g~v~~v~~~g~~i-~A~~VI~A~ 160 (428)
T PRK10157 112 AWLMEQAEEAGAQLITGIRVDNLVQ--RDGKVVGVEADGDVI-EAKTVILAD 160 (428)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEE--eCCEEEEEEcCCcEE-ECCEEEEEe
Confidence 3333445557899999999999987 555654333455554 899999993
No 51
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.011 Score=53.95 Aligned_cols=212 Identities=16% Similarity=0.114 Sum_probs=107.6
Q ss_pred hcCCCCeeEcceEEEEEEeecCC---C--ceEEEccCCCc--cccccEEEecCCCCCCcchhhhcCCCCCCCCCcc-hhH
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDK---N--LWSVSGLDGQS--LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFA-PDL 90 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~---~--~~~v~~~~G~~--~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~~~-~~~ 90 (259)
.+..+.+++++.+|..|.. +. + .|-+... +.. ...++.++.+ +..+++..+++.. -. .+.
T Consensus 225 i~~~G~~v~~~~pv~~l~l--~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~---~~v~~~~~~~ps~------W~~~~~ 292 (485)
T COG3349 225 IPERGRKVHADYPVKELDL--DGARGLAKVTGGDVT-GPEQEQQAALAVVDA---FAVQRFKRDLPSE------WPKWSN 292 (485)
T ss_pred ccccCceeeccceeeeeec--cccccccceEeeeec-CcceEeeehhhhhcc---cccchHhhcCccc------cccccc
Confidence 3345678899999999986 22 2 2444332 432 2245555555 5666666665542 11 223
Q ss_pred HHHhccCCCcceeEEEEeccCCCCCC-C-ccceeecC----CCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHH----
Q 024990 91 AVKLEEIPVNPCFALMLAFSEPLSSI-P-VKGFSFQD----SEVLSWAHCDSSKPGRSANSERWVLHSTADYARTV---- 160 (259)
Q Consensus 91 ~~~l~~~~~~~~~~~~l~~~~~~~~~-~-~~g~~~~~----~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~---- 160 (259)
...|......|.+++++.|+...+.. . ...+++.+ ...+..+.++..+ ++..+.+..
T Consensus 293 f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~-------------~~~~y~e~g~~~~ 359 (485)
T COG3349 293 FDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLAL-------------TSPDYVEPGAGCY 359 (485)
T ss_pred ccccccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccc-------------cchhhccccchhh
Confidence 34566677889999999998643210 0 01001100 0001111111111 111111100
Q ss_pred HhhcCCCC--CchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCC--CCCcCC--CCCeeecCCCCEEEeecCCC
Q 024990 161 IAQTGLQK--PSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFP--AASIAK--EERCLWDVKRRLAICGDFCV 234 (259)
Q Consensus 161 ~~~~~~~~--~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p--~~~~g~--~~~~~~~~~~~l~laGD~~~ 234 (259)
++....+. -...+.+++.....+++....+...+-. .+.++-...++ ...+|. .++...++.++++++|||..
T Consensus 360 le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~ 438 (485)
T COG3349 360 LEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTK 438 (485)
T ss_pred hhhhhcccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceee
Confidence 00000000 0012456666666666665544322211 33333333333 333332 23444567889999999986
Q ss_pred C---CChhHHHHHHHHHHHHHHhhh
Q 024990 235 S---PNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 235 g---~~ie~A~~SG~~aA~~l~~~l 256 (259)
. ++||+|..||++||+.+.+.+
T Consensus 439 ~~~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 439 QPYLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred cCCcCccchhhhhHHHHHHHHHHhh
Confidence 5 599999999999999998654
No 52
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.57 E-value=0.51 Score=42.04 Aligned_cols=47 Identities=28% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|.+++.+.-+++++ ++.|.+|+. ++++|.|++.+|..+ .+|.||.|+
T Consensus 117 L~~~~~~~~~v~~~-~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~ad 163 (388)
T PRK07608 117 LWAALRFQPNLTWF-PARAQGLEV--DPDAATLTLADGQVL-RADLVVGAD 163 (388)
T ss_pred HHHHHHhCCCcEEE-cceeEEEEe--cCCeEEEEECCCCEE-EeeEEEEeC
Confidence 44444432237778 999999987 677899988888653 899999993
No 53
>PRK07045 putative monooxygenase; Reviewed
Probab=96.53 E-value=0.36 Score=43.10 Aligned_cols=46 Identities=28% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCc--eEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~--~~v~~~~G~~~~~~d~VIla~ 64 (259)
+.+.+..+++++++++|..|+. ++++ +.|+.++|+. ..+|.||.|+
T Consensus 114 ~~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~-~~~~~vIgAD 161 (388)
T PRK07045 114 AKLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGER-VAPTVLVGAD 161 (388)
T ss_pred HHHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCE-EECCEEEECC
Confidence 3333344688999999999997 4444 4678778875 4899999883
No 54
>PRK06185 hypothetical protein; Provisional
Probab=96.49 E-value=0.6 Score=41.91 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.+++.+.||.. .|.+++-|++++..+|+.|...+
T Consensus 283 ~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~ 322 (407)
T PRK06185 283 RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPL 322 (407)
T ss_pred CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence 35899999954 46799999999999998887543
No 55
>PRK06996 hypothetical protein; Provisional
Probab=96.18 E-value=0.91 Score=40.79 Aligned_cols=40 Identities=8% Similarity=-0.227 Sum_probs=31.7
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEccCC--CccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGLDG--QSLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G--~~~~~~d~VIla 63 (259)
.++++++++.|.+++. ++++|+++..+| ....++|.||-|
T Consensus 128 ~g~~~~~~~~v~~~~~--~~~~v~v~~~~~~g~~~i~a~lvIgA 169 (398)
T PRK06996 128 TPVRWLTSTTAHAPAQ--DADGVTLALGTPQGARTLRARIAVQA 169 (398)
T ss_pred CCCEEEcCCeeeeeee--cCCeEEEEECCCCcceEEeeeEEEEC
Confidence 4688999999999987 778899887654 222489999998
No 56
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.04 E-value=1 Score=40.11 Aligned_cols=46 Identities=9% Similarity=-0.069 Sum_probs=34.3
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+++.+.-++++++++.|.+|.. ++++|.|+.++| . .++|.||.|+
T Consensus 111 ~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~v~~~~~-~-~~adlvIgAD 156 (374)
T PRK06617 111 LSKITNNPLITLIDNNQYQEVIS--HNDYSIIKFDDK-Q-IKCNLLIICD 156 (374)
T ss_pred HHHHhcCCCcEEECCCeEEEEEE--cCCeEEEEEcCC-E-EeeCEEEEeC
Confidence 33333322478899999999987 677888888776 4 4899999994
No 57
>PRK06834 hypothetical protein; Provisional
Probab=96.00 E-value=0.63 Score=43.18 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=34.8
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..+++|++++.|.+|+. +++++.++..+|+. ..+|.||.|+
T Consensus 111 ~~~gv~i~~~~~v~~v~~--~~~~v~v~~~~g~~-i~a~~vVgAD 152 (488)
T PRK06834 111 GELGVPIYRGREVTGFAQ--DDTGVDVELSDGRT-LRAQYLVGCD 152 (488)
T ss_pred HhCCCEEEcCCEEEEEEE--cCCeEEEEECCCCE-EEeCEEEEec
Confidence 345789999999999998 77789888777765 4899999993
No 58
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.91 E-value=0.9 Score=38.41 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=32.1
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..++..++++++++.|.+++. +++++.+...++....++|.||+|
T Consensus 99 ~~~~~~gv~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~a~~vv~a 143 (295)
T TIGR02032 99 ERAQEAGAELRLGTTVLDVEI--HDDRVVVIVRGGEGTVTAKIVIGA 143 (295)
T ss_pred HHHHHcCCEEEeCcEEeeEEE--eCCEEEEEEcCccEEEEeCEEEEC
Confidence 334456889999999999987 566666654433222489999999
No 59
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.86 E-value=0.7 Score=41.59 Aligned_cols=55 Identities=15% Similarity=0.058 Sum_probs=39.5
Q ss_pred CCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 8 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 8 ~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+.-+..+....|+..+++++.+++|..+.. +++++.+....|.....++.||.|+
T Consensus 94 R~~fd~~La~~A~~aGae~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~a~~vI~Ad 148 (396)
T COG0644 94 RAKFDKWLAERAEEAGAELYPGTRVTGVIR--EDDGVVVGVRAGDDEVRAKVVIDAD 148 (396)
T ss_pred hHHhhHHHHHHHHHcCCEEEeceEEEEEEE--eCCcEEEEEEcCCEEEEcCEEEECC
Confidence 334455556677778999999999999998 6667655444442223899999994
No 60
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.79 E-value=1.3 Score=41.58 Aligned_cols=48 Identities=29% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc--CCC-ccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~--~G~-~~~~~d~VIla~ 64 (259)
.+.+.+..+++|+++++|.+|+. ++++++++.. +|+ ...++|.||-|+
T Consensus 120 ~~~~~~~~gv~v~~g~~v~~i~~--~~~~v~v~~~~~~G~~~~i~ad~vVgAD 170 (538)
T PRK06183 120 RAGLARFPHVRVRFGHEVTALTQ--DDDGVTVTLTDADGQRETVRARYVVGCD 170 (538)
T ss_pred HHHHHhCCCcEEEcCCEEEEEEE--cCCeEEEEEEcCCCCEEEEEEEEEEecC
Confidence 34444434789999999999998 7788887664 563 224899999884
No 61
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.78 E-value=1.5 Score=39.99 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=37.0
Q ss_pred HHHHHHhcCC--CCeeEcceEEEEEEee-----cCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQP--GVESKFGVGVGRFEWL-----EDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l--~~~i~~~~~V~~I~~~-----~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.|.+++.+.. +++++++++|.+|+.. +++++++|+..+|+.+ ++|.||.|+
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i-~a~llVgAD 179 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVL-YTKLLIGAD 179 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEE-EeeEEEEec
Confidence 3455555444 4789999999999741 1246788888888764 899999984
No 62
>PRK10015 oxidoreductase; Provisional
Probab=95.52 E-value=0.44 Score=43.42 Aligned_cols=42 Identities=21% Similarity=0.155 Sum_probs=30.4
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
++..+++|+++++|..|.. +++++.....++..+ .+|.||+|
T Consensus 118 a~~~Gv~i~~~~~V~~i~~--~~~~v~~v~~~~~~i-~A~~VI~A 159 (429)
T PRK10015 118 AEQAGAQFIPGVRVDALVR--EGNKVTGVQAGDDIL-EANVVILA 159 (429)
T ss_pred HHHcCCEEECCcEEEEEEE--eCCEEEEEEeCCeEE-ECCEEEEc
Confidence 4456889999999999987 555665332344343 89999999
No 63
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.48 E-value=0.031 Score=43.43 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=28.9
Q ss_pred cceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 28 FGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 28 ~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
...+|..|++ .+++|.|.+.+|..+ .||+||+|
T Consensus 120 ~~~~V~~i~~--~~~~~~v~~~~g~~~-~~d~VvLa 152 (156)
T PF13454_consen 120 VRAEVVDIRR--DDDGYRVVTADGQSI-RADAVVLA 152 (156)
T ss_pred EeeEEEEEEE--cCCcEEEEECCCCEE-EeCEEEEC
Confidence 5679999998 778899999999875 89999999
No 64
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.41 E-value=0.032 Score=49.53 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCchHHHHHHhcC---CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCc
Q 024990 9 PGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 70 (259)
Q Consensus 9 ~Gm~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~ 70 (259)
..-+.|++.|... .+++|+++++|.+|+. ++.+.+|.+.+|+++ .+|.+|||+-+..-|
T Consensus 108 dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i-~~d~lilAtGG~S~P 169 (408)
T COG2081 108 DKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETV-KCDSLILATGGKSWP 169 (408)
T ss_pred cchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEE-EccEEEEecCCcCCC
Confidence 4456677777655 4799999999999998 667899999999754 899999996544444
No 65
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.38 E-value=0.023 Score=49.51 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=37.7
Q ss_pred chHHHHHHhc---CCCCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEec
Q 024990 11 MNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla 63 (259)
...+.+.|.+ ..+++|+++++|.+|.. ++++|+ |.+++|+ + .+|+||+|
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~gv~~~~g~-i-~ad~vV~a 198 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV--DGGRVTGVRTSDGE-I-RADRVVLA 198 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE--ETTEEEEEEETTEE-E-EECEEEE-
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh--cccccccccccccc-c-ccceeEec
Confidence 3455555544 35899999999999998 778898 9999997 4 89999999
No 66
>PRK06184 hypothetical protein; Provisional
Probab=95.24 E-value=1.2 Score=41.45 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc---cCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~---~~G~~~~~~d~VIla~ 64 (259)
|.+++.+ .+++|+++++|.+|+. +++++.++. .+++. .++|.||.|+
T Consensus 115 L~~~l~~-~gv~i~~~~~v~~i~~--~~~~v~v~~~~~~~~~~-i~a~~vVgAD 164 (502)
T PRK06184 115 LRERLAE-LGHRVEFGCELVGFEQ--DADGVTARVAGPAGEET-VRARYLVGAD 164 (502)
T ss_pred HHHHHHH-CCCEEEeCcEEEEEEE--cCCcEEEEEEeCCCeEE-EEeCEEEECC
Confidence 3444443 4789999999999997 677887765 44444 4899999993
No 67
>PRK08244 hypothetical protein; Provisional
Probab=95.08 E-value=1.4 Score=40.77 Aligned_cols=51 Identities=24% Similarity=0.102 Sum_probs=35.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc--CCCccccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~--~G~~~~~~d~VIla~ 64 (259)
..+....++..+++|++++.|.+|+. +++++.++.. +|+...++|.||.|+
T Consensus 103 e~~L~~~~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 103 EKVLEEHARSLGVEIFRGAEVLAVRQ--DGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred HHHHHHHHHHcCCeEEeCCEEEEEEE--cCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 34444444556889999999999987 6677766543 453224899999993
No 68
>PRK06126 hypothetical protein; Provisional
Probab=94.99 E-value=0.92 Score=42.61 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEc---cCCC-ccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~---~~G~-~~~~~d~VIla~ 64 (259)
-+++|++++.|.+|+. +++++.++. .+|+ ....+|.||.|+
T Consensus 140 ~~v~i~~~~~v~~i~~--~~~~v~v~~~~~~~g~~~~i~ad~vVgAD 184 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQ--DADGVTATVEDLDGGESLTIRADYLVGCD 184 (545)
T ss_pred CCceEEeccEEEEEEE--CCCeEEEEEEECCCCcEEEEEEEEEEecC
Confidence 3689999999999998 667776654 3454 124799999994
No 69
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=94.94 E-value=2.7 Score=39.49 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc--cCCCccccccEEEecCCCCCCcchhhhcC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~--~~G~~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
|.+++.+.-+++|++++.|.+++. ++++|.++. .+|+....+|.||.|+ -..+..++.+.
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~ad~vVgAD--G~~S~vR~~lg 192 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQ--HDDGVTLTVETPDGPYTLEADWVIACD--GARSPLREMLG 192 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEE--cCCEEEEEEECCCCcEEEEeCEEEECC--CCCcHHHHHcC
Confidence 344444434588999999999998 667776653 3554224899999993 12333445544
No 70
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.84 E-value=0.045 Score=48.90 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=37.0
Q ss_pred HHHHHHhcCC--CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 13 SICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~l--~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+.+.|++.+ +++|+++++|.+|+. ++++|.|.+.+|..+ .+|+||+|
T Consensus 136 ~~~~~l~~~~~~G~~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~a~~vV~a 185 (381)
T TIGR03197 136 QLCRALLAHAGIRLTLHFNTEITSLER--DGEGWQLLDANGEVI-AASVVVLA 185 (381)
T ss_pred HHHHHHHhccCCCcEEEeCCEEEEEEE--cCCeEEEEeCCCCEE-EcCEEEEc
Confidence 3444443322 688999999999997 677899988888643 89999999
No 71
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.64 E-value=3 Score=36.88 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=33.2
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+++|+++++|.+|+. ++++|.|.+++|. + .+|+||+|
T Consensus 161 ~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~-~-~a~~vV~A 199 (376)
T PRK11259 161 EAGAELLFNEPVTAIEA--DGDGVTVTTADGT-Y-EAKKLVVS 199 (376)
T ss_pred HCCCEEECCCEEEEEEe--eCCeEEEEeCCCE-E-EeeEEEEe
Confidence 45789999999999998 6678999888874 3 89999999
No 72
>PRK11445 putative oxidoreductase; Provisional
Probab=94.26 E-value=3.6 Score=36.28 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=31.7
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEc-cCCCc-cccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~-~~G~~-~~~~d~VIla~ 64 (259)
.++++++++.|.+|+. ++++|.|+. .+|+. ..++|.||.|+
T Consensus 111 ~gv~v~~~~~v~~i~~--~~~~~~v~~~~~g~~~~i~a~~vV~Ad 153 (351)
T PRK11445 111 ASVEVYHNSLCRKIWR--EDDGYHVIFRADGWEQHITARYLVGAD 153 (351)
T ss_pred cCCEEEcCCEEEEEEE--cCCEEEEEEecCCcEEEEEeCEEEECC
Confidence 3578999999999997 677898874 46641 23799999993
No 73
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=94.16 E-value=3.9 Score=36.36 Aligned_cols=42 Identities=21% Similarity=-0.005 Sum_probs=31.2
Q ss_pred CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCc
Q 024990 23 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 70 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~ 70 (259)
+++++ +..|..++. +++++|.|++++|+.+ ++|.||.| ....
T Consensus 99 gv~~~-~~~v~~i~~-~~~~~~~v~~~~g~~~-~a~~VI~A---~G~~ 140 (388)
T TIGR01790 99 GVLWL-ERKAIHAEA-DGVALSTVYCAGGQRI-QARLVIDA---RGFG 140 (388)
T ss_pred CcEEE-ccEEEEEEe-cCCceeEEEeCCCCEE-EeCEEEEC---CCCc
Confidence 67765 667888887 1266788988888654 89999999 5554
No 74
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=94.05 E-value=0.08 Score=47.93 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=35.6
Q ss_pred CchHHHHHHhc---CCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecCCCCCCc
Q 024990 10 GMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSP 70 (259)
Q Consensus 10 Gm~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~~~~p~~ 70 (259)
--.++.+.|.+ .++++|+++++|.+|+. ++++ +.|.++++..+ .+|+||+|+=+...|
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~f~v~~~~~~~~-~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEK--KEDGVFGVKTKNGGEY-EADAVILATGGKSYP 168 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEE--ETTEEEEEEETTTEEE-EESEEEE----SSSG
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeee--cCCceeEeeccCcccc-cCCEEEEecCCCCcc
Confidence 45566676644 45799999999999997 5566 88887555554 899999994433433
No 75
>PLN02463 lycopene beta cyclase
Probab=93.95 E-value=4.4 Score=37.19 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+++++ ++.|.+|+. +++++.|++++|..+ .+|.||.|
T Consensus 127 ~GV~~~-~~~V~~I~~--~~~~~~V~~~dG~~i-~A~lVI~A 164 (447)
T PLN02463 127 NGVQFH-QAKVKKVVH--EESKSLVVCDDGVKI-QASLVLDA 164 (447)
T ss_pred cCCEEE-eeEEEEEEE--cCCeEEEEECCCCEE-EcCEEEEC
Confidence 467765 679999998 677889998888654 89999999
No 76
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.65 E-value=0.084 Score=48.61 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred chHHHHHHhcCCCCe--eEcceEEEEEEeecCCCceEEEccCCC-c--cccccEEEec
Q 024990 11 MNSICKALCHQPGVE--SKFGVGVGRFEWLEDKNLWSVSGLDGQ-S--LGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~--i~~~~~V~~I~~~~~~~~~~v~~~~G~-~--~~~~d~VIla 63 (259)
+....+..++..+++ |++++.|.+|++ .+++|.|++.++. . ...||+||+|
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEP--VDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEee--cCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 333444555555654 899999999998 6778999875432 1 1369999999
No 77
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.62 E-value=0.15 Score=46.00 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=40.1
Q ss_pred HHHHHHhcCC-CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQP-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l-~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.|.+.|.+.+ +..++++++|.+|+. ++++|.|+.++|+. .++|.||.|+
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~-~~ad~vVgAD 155 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEE--QAEEVQVLFTDGTE-YRCDLLIGAD 155 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEe--cCCcEEEEEcCCCE-EEeeEEEECC
Confidence 4677777776 356899999999998 77889998888875 4899999993
No 78
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.25 E-value=0.15 Score=34.70 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=28.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG 51 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G 51 (259)
........+..+++|++++.|.+|+. ++++++|+++||
T Consensus 43 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~~~V~~~~g 80 (80)
T PF00070_consen 43 AKILEEYLRKRGVEVHTNTKVKEIEK--DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHTTEEEEESEEEEEEEE--ETTSEEEEEETS
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEE--eCCEEEEEEecC
Confidence 34444455556899999999999998 666677877776
No 79
>PRK05868 hypothetical protein; Validated
Probab=92.97 E-value=6.3 Score=35.06 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=42.0
Q ss_pred HHHHHHhcC--CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhc
Q 024990 13 SICKALCHQ--PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVT 76 (259)
Q Consensus 13 ~l~~~La~~--l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll 76 (259)
.|.+.|.+. .+++|++++.|.+|+. ++++++|+.++|+.. ++|.||-|+ =..+..++.+
T Consensus 106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~dg~~~-~adlvIgAD--G~~S~vR~~~ 166 (372)
T PRK05868 106 DLVELLYGATQPSVEYLFDDSISTLQD--DGDSVRVTFERAAAR-EFDLVIGAD--GLHSNVRRLV 166 (372)
T ss_pred HHHHHHHHhccCCcEEEeCCEEEEEEe--cCCeEEEEECCCCeE-EeCEEEECC--CCCchHHHHh
Confidence 445544432 3578999999999987 677899988888764 899999884 2334444444
No 80
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=92.82 E-value=0.26 Score=45.83 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=35.6
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecC-CCceEEE---ccCCC--ccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLED-KNLWSVS---GLDGQ--SLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~-~~~~~v~---~~~G~--~~~~~d~VIla 63 (259)
.+|.+.+.+..+++|+++++|..|++ . +++|++. +.+|+ .+ .+|.||+|
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~d~~w~v~v~~t~~g~~~~i-~Ad~VV~A 242 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLER--LSDGGWEVTVKDRNTGEKREQ-VADYVFIG 242 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEE--CCCCCEEEEEEecCCCceEEE-EcCEEEEC
Confidence 44555554444789999999999997 5 6789886 34452 33 79999998
No 81
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=92.26 E-value=0.43 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=26.5
Q ss_pred CCEEEeecCC------CCCChhHHHHHHHHHHHHHHhhh
Q 024990 224 RRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 224 ~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
++|.+.||.. .|.+++-|+++|..+|+.|...+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~ 329 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAAL 329 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHh
Confidence 4899999964 45689999999999999887653
No 82
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=92.23 E-value=0.28 Score=44.57 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCCccccccEEEec
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~~~~~~d~VIla 63 (259)
++++++.+. +++|++|++|..|++ .++ .+.+.+.+|+...+++.||.+
T Consensus 158 ~l~e~a~~~-g~~i~ln~eV~~i~~--~~dg~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 158 ALAEEAQAN-GVELRLNTEVTGIEK--QSDGVFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred HHHHHHHHc-CCEEEecCeeeEEEE--eCCceEEEEecCCcEEEEeeEEEEC
Confidence 444444433 889999999999998 666 456777788641289999998
No 83
>PRK07236 hypothetical protein; Provisional
Probab=92.02 E-value=0.34 Score=43.26 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=42.4
Q ss_pred CchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 10 GMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 10 Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+...+-+.|.+.++ .+|++++.|.+|+. ++++|+|+.++|+.+ .+|.||.|.
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vIgAD 150 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQ--DGDRVTARFADGRRE-TADLLVGAD 150 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 45667778877764 57899999999998 677899988888764 899999994
No 84
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.88 E-value=0.25 Score=47.61 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=37.4
Q ss_pred HHHHHHhcCC--CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 13 SICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~l--~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+.+.|.+.. +++|+++++|.+|+. .+++|.|.+.+|..+ .+|.||+|
T Consensus 409 ~l~~aL~~~a~~Gv~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~ad~VV~A 458 (662)
T PRK01747 409 ELCRALLALAGQQLTIHFGHEVARLER--EDDGWQLDFAGGTLA-SAPVVVLA 458 (662)
T ss_pred HHHHHHHHhcccCcEEEeCCEeeEEEE--eCCEEEEEECCCcEE-ECCEEEEC
Confidence 4555554444 589999999999997 667899988777543 79999999
No 85
>PRK06847 hypothetical protein; Provisional
Probab=91.55 E-value=0.37 Score=42.69 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=34.4
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+++|+++++|.+|+. +++++.++..+|+.+ .+|.||+|+
T Consensus 119 ~~gv~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vI~Ad 159 (375)
T PRK06847 119 AAGADVRLGTTVTAIEQ--DDDGVTVTFSDGTTG-RYDLVVGAD 159 (375)
T ss_pred HhCCEEEeCCEEEEEEE--cCCEEEEEEcCCCEE-EcCEEEECc
Confidence 34788999999999997 677888888888764 899999993
No 86
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=91.49 E-value=0.36 Score=44.86 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=30.6
Q ss_pred CeeEcceEEEEEEeecC-CCceEEEccCCCccccccEEEec
Q 024990 24 VESKFGVGVGRFEWLED-KNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~-~~~~~v~~~~G~~~~~~d~VIla 63 (259)
++|+++++|..|+. . ++.|.|++.+|+ + .+|.||+|
T Consensus 232 v~i~~~t~V~~I~~--~~~~~~~V~T~~G~-i-~A~~VVva 268 (497)
T PTZ00383 232 ISINLNTEVLNIER--SNDSLYKIHTNRGE-I-RARFVVVS 268 (497)
T ss_pred EEEEeCCEEEEEEe--cCCCeEEEEECCCE-E-EeCEEEEC
Confidence 67899999999997 4 557899888884 3 89999999
No 87
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.28 E-value=0.44 Score=40.55 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=33.7
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..++++++ +.|.+|++ ++++|.+++.+|..+ .+|+||+|+
T Consensus 67 ~~~~gv~~~~-~~v~~v~~--~~~~~~v~~~~~~~~-~~d~liiAt 108 (300)
T TIGR01292 67 AVKFGAEIIY-EEVIKVDL--SDRPFKVKTGDGKEY-TAKAVIIAT 108 (300)
T ss_pred HHHcCCeEEE-EEEEEEEe--cCCeeEEEeCCCCEE-EeCEEEECC
Confidence 3345788888 89999998 677899988777654 899999994
No 88
>PRK07588 hypothetical protein; Provisional
Probab=91.13 E-value=0.45 Score=42.52 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=33.6
Q ss_pred CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+++|++++.|.+|+. ++++|+|+.++|+.. ++|.||.|+
T Consensus 116 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~d~vIgAD 154 (391)
T PRK07588 116 QVETIFDDSIATIDE--HRDGVRVTFERGTPR-DFDLVIGAD 154 (391)
T ss_pred CeEEEeCCEEeEEEE--CCCeEEEEECCCCEE-EeCEEEECC
Confidence 478999999999998 778899998898764 899999983
No 89
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.74 E-value=0.6 Score=41.61 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=36.5
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+...+..++++++++.|.+|+. +++++.+...+|+.+ .+|.||+|+
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vI~a~ 235 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEK--TDSGIRATLDSGRSI-EVDAVIAAA 235 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEc--cCCEEEEEEcCCcEE-ECCEEEECc
Confidence 3334456899999999999997 666788888888764 899999993
No 90
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=90.60 E-value=0.67 Score=41.49 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=39.4
Q ss_pred CCchHHHHHHhc---CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcc
Q 024990 9 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR 71 (259)
Q Consensus 9 ~Gm~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~ 71 (259)
+--+++.+.|.. .++++|+++++|.+|+ + ++|.+.+.++.....+|+||+|+=+.+.|+
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~---~-~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ---G-GTLRFETPDGQSTIEADAVVLALGGASWSQ 144 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe---C-CcEEEEECCCceEEecCEEEEcCCCccccc
Confidence 344556666644 4689999999999993 3 358887644322238999999955444443
No 91
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=90.55 E-value=0.6 Score=41.86 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.8
Q ss_pred hHHHHHHhc---CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+.+.|.+ ..+++|+++++|.+|+. ++++|.|.+.+|+ ..+|.||+|
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~~~~g~--i~ad~vV~A 199 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDE--HANGVVVRTTQGE--YEARTLINC 199 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEe--cCCeEEEEECCCE--EEeCEEEEC
Confidence 445555543 35789999999999987 6677888877773 389999999
No 92
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=90.18 E-value=0.51 Score=43.38 Aligned_cols=40 Identities=25% Similarity=0.131 Sum_probs=32.6
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..+++|+.+++|.+|+. ++.|.|.+.+|+ + .+|+||+|+
T Consensus 194 ~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~g~-v-~A~~VV~At 233 (460)
T TIGR03329 194 LELGVEIHENTPMTGLEE---GQPAVVRTPDGQ-V-TADKVVLAL 233 (460)
T ss_pred HHcCCEEECCCeEEEEee---CCceEEEeCCcE-E-ECCEEEEcc
Confidence 346899999999999985 356888887885 3 899999994
No 93
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.14 E-value=0.55 Score=41.66 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=33.5
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
++..+++++.+++|.+|+. ++++|.|.+.+|+ + .+|.||+|
T Consensus 155 ~~~~g~~~~~~~~V~~i~~--~~~~~~v~~~~~~-i-~a~~vV~a 195 (380)
T TIGR01377 155 AEAHGATVRDGTKVVEIEP--TELLVTVKTTKGS-Y-QANKLVVT 195 (380)
T ss_pred HHHcCCEEECCCeEEEEEe--cCCeEEEEeCCCE-E-EeCEEEEe
Confidence 4446889999999999997 6777888876763 3 89999999
No 94
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=89.99 E-value=0.57 Score=42.73 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=41.0
Q ss_pred hHHHHHH----hcCCCCeeEcceEEEEEEeecCCCc-eEEEcc---CCC-ccccccEEEecCCCCCCcchhhhcCC
Q 024990 12 NSICKAL----CHQPGVESKFGVGVGRFEWLEDKNL-WSVSGL---DGQ-SLGQFNGVVASDKNVVSPRFRDVTGR 78 (259)
Q Consensus 12 ~~l~~~L----a~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~---~G~-~~~~~d~VIla~~~~p~~~a~~ll~~ 78 (259)
++|++.| .+.-++++++++.|..|++ .+++ |.|+.. +|+ ....++.|+|- . .-.+..||..
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r--~~dg~W~v~~~~~~~~~~~~v~a~FVfvG---A-GG~aL~LLqk 250 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKR--NGDGRWEVKVKDLKTGEKREVRAKFVFVG---A-GGGALPLLQK 250 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEE--CCCCCEEEEEEecCCCCeEEEECCEEEEC---C-chHhHHHHHH
Confidence 4455555 4444789999999999998 5555 998753 232 22489999998 3 3445666654
No 95
>PRK08163 salicylate hydroxylase; Provisional
Probab=89.67 E-value=0.79 Score=40.94 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.7
Q ss_pred CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++++++++.|.+++. +++++.++..+|+.+ .+|.||.|+
T Consensus 124 ~v~~~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vV~Ad 162 (396)
T PRK08163 124 LVEFRTSTHVVGIEQ--DGDGVTVFDQQGNRW-TGDALIGCD 162 (396)
T ss_pred CcEEEeCCEEEEEec--CCCceEEEEcCCCEE-ecCEEEECC
Confidence 478899999999997 677898888888654 899999993
No 96
>PRK06753 hypothetical protein; Provisional
Probab=89.45 E-value=0.89 Score=40.26 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=39.0
Q ss_pred hHHHHHHhcCC-CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 12 NSICKALCHQP-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l-~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..|-+.|.+.+ +.+|+++++|.+|+. +++++.|++++|+.. .+|.||-|+
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~~~vigad 148 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIEN--ETDKVTIHFADGESE-AFDLCIGAD 148 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEe--cCCcEEEEECCCCEE-ecCEEEECC
Confidence 34566666555 357899999999997 778899988888764 899999884
No 97
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.36 E-value=0.83 Score=40.35 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=32.9
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..|.+++.+..+++|+.+++|.+|+. . .|++.+|+. .+|+||+|
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~i--~a~~VV~A 192 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGDV--HADQVFVC 192 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCcE--EeCEEEEC
Confidence 45556655445889999999999975 2 566667753 79999999
No 98
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=89.34 E-value=0.66 Score=40.23 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=35.1
Q ss_pred hHHHHHHhc---CCCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEec
Q 024990 12 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla 63 (259)
..+...|++ ..+++|+.+++|.+|+. ++++| .|.+.+| .+ .+|+||+|
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~--~~~~~~~v~~~~g-~~-~a~~vV~a 188 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEI--RGEKVTAIVTPSG-DV-QADQVVLA 188 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEe--eCCEEEEEEcCCC-EE-ECCEEEEc
Confidence 344444443 35789999999999997 66666 4677677 33 89999999
No 99
>PRK09897 hypothetical protein; Provisional
Probab=89.31 E-value=0.75 Score=43.17 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=31.2
Q ss_pred CeeEcceEEEEEEeecCCCceEEEccCC-CccccccEEEecCC
Q 024990 24 VESKFGVGVGRFEWLEDKNLWSVSGLDG-QSLGQFNGVVASDK 65 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~~~~v~~~~G-~~~~~~d~VIla~~ 65 (259)
+.|+.+++|..|+. ++++|.|++.+| .. ..+|+||+|+-
T Consensus 124 V~v~~~~~V~~I~~--~~~g~~V~t~~gg~~-i~aD~VVLAtG 163 (534)
T PRK09897 124 VAVYESCQVTDLQI--TNAGVMLATNQDLPS-ETFDLAVIATG 163 (534)
T ss_pred EEEEECCEEEEEEE--eCCEEEEEECCCCeE-EEcCEEEECCC
Confidence 67788999999998 677899987554 44 38999999954
No 100
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=89.23 E-value=0.37 Score=45.18 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=37.6
Q ss_pred CchHHHHHHhcCCC--CeeEcceEEEEEEeecC---CCceEEEccC-CC-ccccccEEEecC
Q 024990 10 GMNSICKALCHQPG--VESKFGVGVGRFEWLED---KNLWSVSGLD-GQ-SLGQFNGVVASD 64 (259)
Q Consensus 10 Gm~~l~~~La~~l~--~~i~~~~~V~~I~~~~~---~~~~~v~~~~-G~-~~~~~d~VIla~ 64 (259)
-|..-.+..|+..+ -.|++||.|.+|++..+ .++|.|++.+ |+ ....||+||+|+
T Consensus 85 ~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvvat 146 (531)
T PF00743_consen 85 EVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVAT 146 (531)
T ss_dssp HHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE
T ss_pred HHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcC
Confidence 34555666676555 36899999999998322 1469998754 42 223699999993
No 101
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=89.16 E-value=16 Score=32.71 Aligned_cols=73 Identities=11% Similarity=-0.000 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCCeee-cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHh
Q 024990 177 VAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 177 v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~~~~-~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~ 254 (259)
..+.+++.+.+++|.+.... ..+.|--..+..+.+ .+.+- .+.++++++. .+.|.++--|-..|+.+|+.|..
T Consensus 311 ~~~~l~~~~~~~~P~l~~~~--~~~~w~G~~~~t~D~--~PiIg~~~~~gl~~a~-G~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 311 TLEHVLAAILEMFPILSRVR--MLRSWGGIVDVTPDG--SPIIGKTPLPNLYLNC-GWGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred HHHHHHHHHHHhCCCcCCCC--eEEEeccccccCCCC--CceeCCCCCCCeEEEe-ccCCcchhhchHHHHHHHHHHhC
Confidence 44555666666666543322 346674444433221 23321 1246888776 45556777888889999998864
No 102
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=88.96 E-value=0.9 Score=41.28 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=32.8
Q ss_pred cCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla 63 (259)
+.++++|+++++|..|+. .++. -.|.+.+|.++ .+|+||+|
T Consensus 184 ~~~G~ei~f~t~VeDi~~--~~~~~~~v~~~~g~~i-~~~~vvlA 225 (486)
T COG2509 184 ESLGGEIRFNTEVEDIEI--EDNEVLGVKLTKGEEI-EADYVVLA 225 (486)
T ss_pred HhcCcEEEeeeEEEEEEe--cCCceEEEEccCCcEE-ecCEEEEc
Confidence 346789999999999998 4442 35667788775 89999999
No 103
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=88.64 E-value=0.77 Score=41.30 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHh---cCCCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEec
Q 024990 13 SICKALC---HQPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La---~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla 63 (259)
.+.+.|+ +..+++|+++++|.+|+. ++++| .|++.+|+ + .+|+||+|
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~v~t~~~~-~-~a~~VV~a 252 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLV--EGGRITGVQTGGGV-I-TADAYVVA 252 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCEEEEEEeCCcE-E-eCCEEEEC
Confidence 3444443 345889999999999987 56665 46666553 3 79999999
No 104
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.41 E-value=0.81 Score=41.99 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCC---CccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G---~~~~~~d~VIla~ 64 (259)
...+...+..+++|++++.|.+|+. +++++.+.+.+| +. ..+|.||+|+
T Consensus 217 ~~l~~~l~~~gV~i~~~~~V~~i~~--~~~~v~v~~~~gg~~~~-i~~D~vi~a~ 268 (462)
T PRK06416 217 KLAERALKKRGIKIKTGAKAKKVEQ--TDDGVTVTLEDGGKEET-LEADYVLVAV 268 (462)
T ss_pred HHHHHHHHHcCCEEEeCCEEEEEEE--eCCEEEEEEEeCCeeEE-EEeCEEEEee
Confidence 3334444456899999999999997 556777766554 34 3899999993
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.88 E-value=1.1 Score=41.89 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=35.2
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..+++++++++|.+|.+ .++.|.|.+.+|..+ .+|.||+|+
T Consensus 276 ~~~~gv~i~~~~~V~~I~~--~~~~~~V~~~~g~~i-~a~~vViAt 318 (517)
T PRK15317 276 VKEYDVDIMNLQRASKLEP--AAGLIEVELANGAVL-KAKTVILAT 318 (517)
T ss_pred HHHCCCEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EcCEEEECC
Confidence 3345788999999999998 667899988788654 899999993
No 106
>PLN02507 glutathione reductase
Probab=87.47 E-value=1.3 Score=41.26 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=36.0
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.....+..+++|++++.|.+|+. ++++..+...+|+.+ .+|.||+++
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~--~~~~~~v~~~~g~~i-~~D~vl~a~ 296 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTK--TEGGIKVITDHGEEF-VADVVLFAT 296 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEE--eCCeEEEEECCCcEE-EcCEEEEee
Confidence 33334456899999999999987 556777777777654 899999993
No 107
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=87.41 E-value=1.2 Score=41.45 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=28.1
Q ss_pred CeeEcceEEEEEEeecCCC-ceEEEcc---CCCc-cccccEEEec
Q 024990 24 VESKFGVGVGRFEWLEDKN-LWSVSGL---DGQS-LGQFNGVVAS 63 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~-~~~v~~~---~G~~-~~~~d~VIla 63 (259)
++|+++++|.+|+. +++ .|.+... +|+. ...+++||++
T Consensus 199 v~i~~~teV~~I~~--~~dg~~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 199 FELQLGHEVRDIKR--NDDGSWTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred eEEEeCCEEEEEEE--CCCCCEEEEEEEcCCCceEEEEcCEEEEC
Confidence 79999999999997 444 4877643 3531 1389999988
No 108
>PRK06116 glutathione reductase; Validated
Probab=87.38 E-value=1.2 Score=40.70 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=33.8
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+..+++|++++.|.+|+. ++++ +.+.+.+|+.+ .+|.||+|+
T Consensus 218 L~~~GV~i~~~~~V~~i~~--~~~g~~~v~~~~g~~i-~~D~Vv~a~ 261 (450)
T PRK06116 218 MEKKGIRLHTNAVPKAVEK--NADGSLTLTLEDGETL-TVDCLIWAI 261 (450)
T ss_pred HHHCCcEEECCCEEEEEEE--cCCceEEEEEcCCcEE-EeCEEEEee
Confidence 3446789999999999987 4444 77777788754 899999994
No 109
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=87.25 E-value=1.3 Score=39.92 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=36.5
Q ss_pred chHHHHHHhcC---CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 11 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..++.+.|.+. .+++|++++.|.+|+. ++++|.+++ ++..+ .+|.||+|
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~~v~~-~~~~i-~ad~VIlA 155 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKK--DDNGFGVET-SGGEY-EADKVILA 155 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCeEEEEE-CCcEE-EcCEEEEC
Confidence 35555555443 4789999999999987 666788877 44443 89999999
No 110
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=87.24 E-value=29 Score=33.44 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=31.2
Q ss_pred CeeEcceEEEEEEeecC-CCceEEEcc------CCC-ccccccEEEecCCCCCCcchhhhc
Q 024990 24 VESKFGVGVGRFEWLED-KNLWSVSGL------DGQ-SLGQFNGVVASDKNVVSPRFRDVT 76 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~-~~~~~v~~~------~G~-~~~~~d~VIla~~~~p~~~a~~ll 76 (259)
+++++++.|.+++...+ +.+++|+.. +|+ ...++|.||-|+ =-.+..++.+
T Consensus 158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaD--Ga~S~VR~~l 216 (634)
T PRK08294 158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCD--GARSRVRKAI 216 (634)
T ss_pred eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECC--CCchHHHHhc
Confidence 57799999999987211 134666553 352 234899999884 2333444444
No 111
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=87.17 E-value=1.3 Score=39.94 Aligned_cols=74 Identities=5% Similarity=-0.112 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCCeee-cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhh
Q 024990 177 VAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 177 v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~~~~-~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
..+.+++.+.+++|.+.... +..|.--.+..+.+ .|.+- ...++|+++.= +++.++--|...|+.+|+.|...
T Consensus 333 ~~~~l~~~~~~~~P~l~~~~---~~~w~G~r~~t~D~--~PiiG~~~~~~l~~~~G-~~~~G~~~ap~~g~~lA~~i~~~ 406 (410)
T PRK12409 333 RIRPLVDWVRRNFPDVSTRR---VVPWAGLRPMMPNM--MPRVGRGRRPGVFYNTG-HGHLGWTLSAATADLVAQVVAQK 406 (410)
T ss_pred HHHHHHHHHHHhCCCCCccc---cceecccCCCCCCC--CCeeCCCCCCCEEEecC-CcccchhhcccHHHHHHHHHcCC
Confidence 45556666666666543222 23574333333221 22221 12467776652 56668889999999999988654
Q ss_pred h
Q 024990 256 L 256 (259)
Q Consensus 256 l 256 (259)
.
T Consensus 407 ~ 407 (410)
T PRK12409 407 L 407 (410)
T ss_pred C
Confidence 3
No 112
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=87.02 E-value=1.2 Score=40.96 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+...+..+++|++++.|.+|+. +++++.+.+.+|+.+ .+|.||+|+
T Consensus 223 ~l~~~L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~g~~l-~~D~vl~a~ 270 (466)
T PRK07845 223 VLEEVFARRGMTVLKRSRAESVER--TGDGVVVTLTDGRTV-EGSHALMAV 270 (466)
T ss_pred HHHHHHHHCCcEEEcCCEEEEEEE--eCCEEEEEECCCcEE-EecEEEEee
Confidence 334444456899999999999986 556777777778764 899999994
No 113
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=86.86 E-value=22 Score=31.65 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=31.9
Q ss_pred CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 24 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+++++.|.+|+. .++++.|.+.+|..+ +++.||-|
T Consensus 101 ~~~~~~~~V~~i~~--~~~~~~v~~~~g~~i-~a~~VvDa 137 (374)
T PF05834_consen 101 GVIRLNARVTSIEE--TGDGVLVVLADGRTI-RARVVVDA 137 (374)
T ss_pred CeEEEccEEEEEEe--cCceEEEEECCCCEE-EeeEEEEC
Confidence 46789999999998 677788888899765 89999999
No 114
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=85.71 E-value=1.7 Score=41.92 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCe-eEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVE-SKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~-i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.|-+.|++.++.+ +++++.|.+|+. ++++++|+..+|+.+ .+|.||.|.
T Consensus 195 ~L~~~L~~alg~~~i~~g~~V~~I~~--~~d~VtV~~~dG~ti-~aDlVVGAD 244 (668)
T PLN02927 195 TLQQILARAVGEDVIRNESNVVDFED--SGDKVTVVLENGQRY-EGDLLVGAD 244 (668)
T ss_pred HHHHHHHhhCCCCEEEcCCEEEEEEE--eCCEEEEEECCCCEE-EcCEEEECC
Confidence 4777888877654 688999999997 678899988888654 899999993
No 115
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=85.50 E-value=1.9 Score=39.40 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=33.7
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+..++++++++.|.+|+. ++++..++..+|+.+ .+|.||+|+
T Consensus 217 l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~viva~ 259 (446)
T TIGR01424 217 MEGRGIRIHPQTSLTSITK--TDDGLKVTLSHGEEI-VADVVLFAT 259 (446)
T ss_pred HHHCCCEEEeCCEEEEEEE--cCCeEEEEEcCCcEe-ecCEEEEee
Confidence 3345889999999999987 556677776677654 899999994
No 116
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=85.50 E-value=1.6 Score=39.93 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=33.8
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..+++|++++.|.+|+. +++++.++..+|+.+ .+|.||+|+
T Consensus 227 ~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vi~a~ 268 (461)
T PRK05249 227 RDSGVTIRHNEEVEKVEG--GDDGVIVHLKSGKKI-KADCLLYAN 268 (461)
T ss_pred HHcCCEEEECCEEEEEEE--eCCeEEEEECCCCEE-EeCEEEEee
Confidence 345789999999999987 556787877777654 899999993
No 117
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.08 E-value=1.9 Score=40.22 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=33.4
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+++++++++|.+|+. +++.|.+++.+|..+ .||+||+|+
T Consensus 280 ~gv~i~~~~~V~~I~~--~~~~~~v~~~~g~~i-~~d~lIlAt 319 (515)
T TIGR03140 280 YPIDLMENQRAKKIET--EDGLIVVTLESGEVL-KAKSVIVAT 319 (515)
T ss_pred hCCeEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 5788999999999987 666788888788654 899999993
No 118
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=84.60 E-value=1.3 Score=39.66 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=29.1
Q ss_pred cCCCCEEEeec-----CCCCC-ChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGD-----FCVSP-NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD-----~~~g~-~ie~A~~SG~~aA~~l~~~l 256 (259)
...++||+||+ ...|| .+.-||.||..|++.+.+-|
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999994 33455 79999999999999887765
No 119
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=84.43 E-value=2 Score=39.36 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=33.3
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCC--ccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~--~~~~~d~VIla~ 64 (259)
.+..+++|++++.|.+|+. +++++.+...+|+ . ..+|.||+|+
T Consensus 221 l~~~gi~i~~~~~v~~i~~--~~~~v~v~~~~g~~~~-i~~D~vi~a~ 265 (461)
T TIGR01350 221 LKKKGVKILTNTKVTAVEK--NDDQVVYENKGGETET-LTGEKVLVAV 265 (461)
T ss_pred HHHcCCEEEeCCEEEEEEE--eCCEEEEEEeCCcEEE-EEeCEEEEec
Confidence 3445789999999999987 5667777766663 4 3899999994
No 120
>PRK06475 salicylate hydroxylase; Provisional
Probab=84.37 E-value=2.5 Score=37.99 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc--CCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~--~G~~~~~~d~VIla~ 64 (259)
|.+++.+..+++|+++++|.+++. +++++.++.. ++....++|.||-|+
T Consensus 113 L~~~~~~~~~i~v~~~~~v~~~~~--~~~~v~v~~~~~~~~~~~~adlvIgAD 163 (400)
T PRK06475 113 LLDACRNNPGIEIKLGAEMTSQRQ--TGNSITATIIRTNSVETVSAAYLIACD 163 (400)
T ss_pred HHHHHHhcCCcEEEECCEEEEEec--CCCceEEEEEeCCCCcEEecCEEEECC
Confidence 333343334678999999999987 6778877652 332223789999883
No 121
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=83.65 E-value=3 Score=37.88 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCchHHHHHH---hcCCCCeeEcceEEEEEEeecCC-CceE--EEccCCCccccccEEEecC
Q 024990 9 PGMNSICKAL---CHQPGVESKFGVGVGRFEWLEDK-NLWS--VSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 9 ~Gm~~l~~~L---a~~l~~~i~~~~~V~~I~~~~~~-~~~~--v~~~~G~~~~~~d~VIla~ 64 (259)
++...+.+.| ++..+++|+++++|.+|.. ++ +++. +...++.....++.||+|+
T Consensus 120 ~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAt 179 (432)
T TIGR02485 120 GGGKALTNALYSSAERLGVEIRYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAA 179 (432)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcC
Confidence 4556677777 4456789999999999986 42 3443 2322222223799999994
No 122
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=83.39 E-value=2.4 Score=41.92 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=41.2
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcc
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR 71 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~ 71 (259)
++.+.+...+..+++|++++.|.+|.. ++....|+..||+.+ .+|.||+|+-..|...
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i-~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSL-EADLIVMAAGIRPNDE 241 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEE-EcCEEEECCCCCcCcH
Confidence 344555556677899999999999986 444445667788764 8999999954444443
No 123
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=83.17 E-value=2.8 Score=38.89 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHhcC---CCCeeEcceEEEEEEeecCC-CceEEEc---cCCC-ccccccEEEec
Q 024990 13 SICKALCHQ---PGVESKFGVGVGRFEWLEDK-NLWSVSG---LDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~---l~~~i~~~~~V~~I~~~~~~-~~~~v~~---~~G~-~~~~~d~VIla 63 (259)
.+.++|++. .+++|+++++|.+|+. ++ ++|.++. .+|+ ....+|+||+|
T Consensus 179 ~l~~aL~~~a~~~Gv~i~~~t~V~~i~~--~~~~~v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 179 ALTKQLLGYLVQNGTTIRFGHEVRNLKR--QSDGSWTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCCCeEEEEEeeccCCceEEEECCEEEEC
Confidence 445555443 3789999999999997 43 4687753 2342 11389999998
No 124
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=83.05 E-value=3.2 Score=38.08 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.9
Q ss_pred CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++++++++.|.+|+. +++++.++..+|+.+ .+|.||+|+
T Consensus 223 gI~i~~~~~V~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~ 261 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQ--DGDGVTLTLDDGSTV-TADVLLVAT 261 (452)
T ss_pred CCEEEeCCEEEEEEE--cCCeEEEEEcCCCEE-EcCEEEEee
Confidence 688999999999987 556777777677654 899999994
No 125
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=82.84 E-value=2.8 Score=38.47 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=37.5
Q ss_pred hHHHHHHhcCCC--CeeEcceEEEEEEeecCCCceEEEccCCCcc-ccccEEEecC
Q 024990 12 NSICKALCHQPG--VESKFGVGVGRFEWLEDKNLWSVSGLDGQSL-GQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~--~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~-~~~d~VIla~ 64 (259)
....+..++..+ .+|++++.|+.+.+..+++.|.|++++|... .++|.||+||
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~AT 140 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVAT 140 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEee
Confidence 334444444433 4789999999988854566899999888642 2599999994
No 126
>PRK07846 mycothione reductase; Reviewed
Probab=82.66 E-value=3.3 Score=38.03 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=32.5
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 65 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~ 65 (259)
.++++++++.|.+|+. ++++..+++.+|+.+ .+|.||+|+-
T Consensus 219 ~~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~G 259 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQ--DGSGVTLRLDDGSTV-EADVLLVATG 259 (451)
T ss_pred cCeEEEeCCEEEEEEE--cCCEEEEEECCCcEe-ecCEEEEEEC
Confidence 3588899999999987 555677777777654 8999999943
No 127
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=82.37 E-value=3.3 Score=38.14 Aligned_cols=47 Identities=21% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCc-cccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~-~~~~d~VIla~ 64 (259)
.+.|.+ -++++++++.|.+++. .++++.++.++|.. ..++|.|++|+
T Consensus 221 ~~~l~~-~gv~i~~~~~v~~~~~--~~~~v~v~~~~g~~~~~~ad~vLvAi 268 (454)
T COG1249 221 TKQLEK-GGVKILLNTKVTAVEK--KDDGVLVTLEDGEGGTIEADAVLVAI 268 (454)
T ss_pred HHHHHh-CCeEEEccceEEEEEe--cCCeEEEEEecCCCCEEEeeEEEEcc
Confidence 344444 5688999999999997 55557777777752 23799999993
No 128
>PRK14727 putative mercuric reductase; Provisional
Probab=82.37 E-value=3.2 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=33.4
Q ss_pred HhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 18 LCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 18 La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+..+++|++++.|.+|+. +++++.+.+.+|+ + .+|.||+|+
T Consensus 237 ~L~~~GV~i~~~~~V~~i~~--~~~~~~v~~~~g~-i-~aD~VlvA~ 279 (479)
T PRK14727 237 CFEKEGIEVLNNTQASLVEH--DDNGFVLTTGHGE-L-RAEKLLIST 279 (479)
T ss_pred HHHhCCCEEEcCcEEEEEEE--eCCEEEEEEcCCe-E-EeCEEEEcc
Confidence 34456789999999999987 5667777766664 3 799999994
No 129
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=82.32 E-value=2.9 Score=37.52 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=32.5
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+..+++|++++.|.+|+. ++.+.+.+.+|+.+ .+|.||++
T Consensus 196 l~~~GV~i~~~~~V~~i~~---~~~~~v~l~~g~~i-~aD~Vv~a 236 (396)
T PRK09754 196 HQQAGVRILLNNAIEHVVD---GEKVELTLQSGETL-QADVVIYG 236 (396)
T ss_pred HHHCCCEEEeCCeeEEEEc---CCEEEEEECCCCEE-ECCEEEEC
Confidence 3456899999999999975 34567777788764 89999999
No 130
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=81.82 E-value=2.9 Score=38.09 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=33.3
Q ss_pred HhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 18 LCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 18 La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+..++++++++.|.+|+. +++++.+.+++|+ + .+|.||+|+
T Consensus 208 ~l~~~gV~v~~~~~v~~i~~--~~~~v~v~~~~g~-i-~~D~vl~a~ 250 (441)
T PRK08010 208 ILRDQGVDIILNAHVERISH--HENQVQVHSEHAQ-L-AVDALLIAS 250 (441)
T ss_pred HHHhCCCEEEeCCEEEEEEE--cCCEEEEEEcCCe-E-EeCEEEEee
Confidence 34456899999999999987 5566777766664 3 799999994
No 131
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=81.74 E-value=2.9 Score=37.90 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=32.9
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC-CCcccc--ccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQ--FNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~-G~~~~~--~d~VIla~ 64 (259)
+.+.+..++++++++.|.+|+. +++.+.+...+ ++.+ . ||+||+||
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~-~~~yd~lIiAT 99 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVND--ERQTVVVRNNKTNETY-EESYDYLILSP 99 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEEC--CCCEEEEEECCCCCEE-ecCCCEEEECC
Confidence 4455566888899999999997 66666665432 3333 5 99999994
No 132
>PRK14694 putative mercuric reductase; Provisional
Probab=81.63 E-value=3.6 Score=37.85 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+...+..+++|++++.|.+|+. +++.+.+.+.+| .+ .+|.||+|+
T Consensus 222 ~~l~~~l~~~GI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i-~~D~vi~a~ 269 (468)
T PRK14694 222 EAIEAAFRREGIEVLKQTQASEVDY--NGREFILETNAG-TL-RAEQLLVAT 269 (468)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEE--cCCEEEEEECCC-EE-EeCEEEEcc
Confidence 3334444456899999999999987 555666665555 33 899999994
No 133
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=81.45 E-value=2 Score=38.00 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=28.5
Q ss_pred CCCeeEcceEEEEEEeecCC-CceEEEccC---CC-ccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDK-NLWSVSGLD---GQ-SLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~-~~~~v~~~~---G~-~~~~~d~VIla 63 (259)
-.+.|+.++.|.+++. .+ ++|+|++.+ |+ ....+|.||+|
T Consensus 292 ~~~~l~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~~~~~~D~VilA 336 (341)
T PF13434_consen 292 GRLRLLPNTEVTSAEQ--DGDGGVRLTLRHRQTGEEETLEVDAVILA 336 (341)
T ss_dssp --SEEETTEEEEEEEE--ES-SSEEEEEEETTT--EEEEEESEEEE-
T ss_pred CCeEEeCCCEEEEEEE--CCCCEEEEEEEECCCCCeEEEecCEEEEc
Confidence 3578999999999998 44 489987764 22 22389999999
No 134
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=81.17 E-value=3.7 Score=37.33 Aligned_cols=40 Identities=20% Similarity=0.051 Sum_probs=30.2
Q ss_pred CCCCeeEcceEEEEEEeecCCCceE-EEccCC--CccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWS-VSGLDG--QSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G--~~~~~~d~VIla 63 (259)
..+++|..++.|.+++. ++++++ +.+.++ .. ..+|+||+|
T Consensus 275 ~~Gg~il~g~~V~~i~~--~~~~v~~V~t~~g~~~~-l~AD~vVLA 317 (419)
T TIGR03378 275 QLGGVMLPGDRVLRAEF--EGNRVTRIHTRNHRDIP-LRADHFVLA 317 (419)
T ss_pred HCCCEEEECcEEEEEEe--eCCeEEEEEecCCccce-EECCEEEEc
Confidence 46889999999999997 566655 454554 23 389999999
No 135
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=80.96 E-value=40 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=26.8
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhh
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.++|++.||.. .|.+++-|++.+..+|+.|...
T Consensus 278 ~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~ 316 (392)
T PRK08243 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEF 316 (392)
T ss_pred eCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 35899999964 4668999999999999887653
No 136
>PLN02697 lycopene epsilon cyclase
Probab=80.09 E-value=54 Score=30.92 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCCeeEcceEEEEEEeecCCCceEE-EccCCCccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v-~~~~G~~~~~~d~VIla 63 (259)
.++++ +++.|..|+. +++++.+ .+.+|..+ .++.||.|
T Consensus 205 ~GV~~-~~~~V~~I~~--~~~~~~vv~~~dG~~i-~A~lVI~A 243 (529)
T PLN02697 205 SGVSY-LSSKVDRITE--ASDGLRLVACEDGRVI-PCRLATVA 243 (529)
T ss_pred cCCEE-EeeEEEEEEE--cCCcEEEEEEcCCcEE-ECCEEEEC
Confidence 46776 7889999987 5667653 45677654 89999999
No 137
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=79.74 E-value=2.8 Score=37.55 Aligned_cols=72 Identities=6% Similarity=0.108 Sum_probs=52.2
Q ss_pred ecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLT 85 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~ 85 (259)
.++.|..+|.++|++..+++|++|+.+..++. .+++|.+. ++ .. .+.||.| .|.+....
T Consensus 192 ~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~--~~~~~~~~--~~-~~--~~~vi~T---g~id~~f~----------- 250 (377)
T TIGR00031 192 LPKGGYTKLFEKMLDHPLIDVKLNCHINLLKD--KDSQLHFA--NK-AI--RKPVIYT---GLIDQLFG----------- 250 (377)
T ss_pred cccccHHHHHHHHHhcCCCEEEeCCccceeec--cccceeec--cc-cc--cCcEEEe---cCchHHHh-----------
Confidence 67899999999999988889999998888875 45556664 23 22 3889999 66654322
Q ss_pred cchhHHHHhccCCCcceeE
Q 024990 86 FAPDLAVKLEEIPVNPCFA 104 (259)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~~ 104 (259)
-.+.+++|++...
T Consensus 251 ------~~~g~L~yrsl~f 263 (377)
T TIGR00031 251 ------YRFGALQYRSLKF 263 (377)
T ss_pred ------hccCcccceeEEE
Confidence 2355688887765
No 138
>PRK06175 L-aspartate oxidase; Provisional
Probab=79.48 E-value=3.9 Score=37.32 Aligned_cols=49 Identities=6% Similarity=-0.140 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCc---eEEEccCCCc-cccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~~-~~~~d~VIla~ 64 (259)
.|.+++.+..+++|+++++|..|.. ++++ +.+.. +|.. ...++.||+||
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~--~~~~v~Gv~~~~-~g~~~~i~Ak~VILAt 185 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIE--NDNTCIGAICLK-DNKQINIYSKVTILAT 185 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEe--cCCEEEEEEEEE-CCcEEEEEcCeEEEcc
Confidence 3444444445789999999999876 4443 22333 4432 23799999994
No 139
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=79.37 E-value=2.8 Score=41.36 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=31.4
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|.+|+. +. ..|.+.+|..+ .||++|+||
T Consensus 65 ~~~gv~~~~g~~V~~Id~--~~--k~V~~~~g~~~-~yD~LVlAT 104 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDT--DQ--KQVITDAGRTL-SYDKLILAT 104 (785)
T ss_pred HHCCCEEEcCCeEEEEEC--CC--CEEEECCCcEe-eCCEEEECC
Confidence 446789999999999987 43 35666788664 899999994
No 140
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=78.99 E-value=3.4 Score=37.38 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=36.8
Q ss_pred CchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 10 GMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 10 Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+.-++++.+.++++|++++.|++|++ ++ |++.+|+..+.++.||-|+
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~~----~~--v~~~~g~~~I~~~tvvWaa 258 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVTP----DG--VTLKDGEEEIPADTVVWAA 258 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEECC----Cc--EEEccCCeeEecCEEEEcC
Confidence 3456677888889999999999999986 34 4444565213899999984
No 141
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=78.99 E-value=4.8 Score=40.12 Aligned_cols=57 Identities=12% Similarity=-0.027 Sum_probs=40.6
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCC--CceEEEccCCCccccccEEEecCCCCCCc
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWSVSGLDGQSLGQFNGVVASDKNVVSP 70 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~--~~~~v~~~~G~~~~~~d~VIla~~~~p~~ 70 (259)
++.+.+...+..+++|++++.|.+|.. ++ ....+...+|+.+ .+|.||+|+-..|..
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~--~~~~~~~~v~~~dG~~i-~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQ--EGVEARKTMRFADGSEL-EVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEe--cCCCceEEEEECCCCEE-EcCEEEECCCcccCc
Confidence 344555566678999999999999975 32 2345666788764 899999995444444
No 142
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=78.26 E-value=4.5 Score=36.93 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=33.4
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC-CCc-cccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQS-LGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~-G~~-~~~~d~VIla~ 64 (259)
+.+.+..+++++++++|.+|+. +++.+.+.+.+ ++. ...||++|+||
T Consensus 65 ~~~~~~~~i~v~~~~~V~~Id~--~~~~v~~~~~~~~~~~~~~yd~lviAt 113 (438)
T PRK13512 65 EKFYDRKQITVKTYHEVIAIND--ERQTVTVLNRKTNEQFEESYDKLILSP 113 (438)
T ss_pred HHHHHhCCCEEEeCCEEEEEEC--CCCEEEEEECCCCcEEeeecCEEEECC
Confidence 4455556788899999999998 66666666533 222 13799999994
No 143
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=78.16 E-value=4.4 Score=35.75 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=30.4
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+++..+++++.+ .|.+|+. +++ +|.+++|+.+ .||++|+||
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~--~~~--~V~~~~g~~~-~yD~LviAt 103 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDP--DRR--KVLLANRPPL-SYDVLSLDV 103 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEec--ccC--EEEECCCCcc-cccEEEEcc
Confidence 3445567887665 7999987 554 4666678664 899999994
No 144
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=78.15 E-value=2.3 Score=38.10 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=28.6
Q ss_pred cCCCCEEEeec------CCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGD------FCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD------~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
..-++|||||+ |++|=.+.-||.||..|++.+...+
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 35679999994 3444479999999999999887654
No 145
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.94 E-value=2.7 Score=38.61 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=38.0
Q ss_pred CchHHHHHHhcCCC--CeeEcceEEEEEEeecCC-CceEEEccCCC---ccccccEEEec
Q 024990 10 GMNSICKALCHQPG--VESKFGVGVGRFEWLEDK-NLWSVSGLDGQ---SLGQFNGVVAS 63 (259)
Q Consensus 10 Gm~~l~~~La~~l~--~~i~~~~~V~~I~~~~~~-~~~~v~~~~G~---~~~~~d~VIla 63 (259)
-|-...+..|+..+ ..|++++.|..++. .+ ++|+|.+.++. ....||+|||+
T Consensus 91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~~~gkW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDS--IDKGKWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred HHHHHHHHHHHhcChhhheEecccEEEEee--ccCCceeEEEecCCcceeEEEeeEEEEc
Confidence 44455566677666 36899999999998 55 69999875542 22479999999
No 146
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=77.45 E-value=5.4 Score=36.63 Aligned_cols=43 Identities=16% Similarity=0.016 Sum_probs=30.7
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCC-ccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~-~~~~~d~VIla~ 64 (259)
.+..+++|++++.|.+|+. +++.+.++. +|+ ....+|.||+|+
T Consensus 221 L~~~GI~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~ 264 (458)
T PRK06912 221 LENDGVKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSV 264 (458)
T ss_pred HHHCCCEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEec
Confidence 3446899999999999986 555555553 442 123899999994
No 147
>PTZ00052 thioredoxin reductase; Provisional
Probab=77.29 E-value=6 Score=36.83 Aligned_cols=46 Identities=20% Similarity=0.056 Sum_probs=34.4
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 65 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~ 65 (259)
...+..++++++++.|.+|+. .+++..+...+|+.+ .+|.||+++-
T Consensus 230 ~~l~~~GV~i~~~~~v~~v~~--~~~~~~v~~~~g~~i-~~D~vl~a~G 275 (499)
T PTZ00052 230 EYMKEQGTLFLEGVVPINIEK--MDDKIKVLFSDGTTE-LFDTVLYATG 275 (499)
T ss_pred HHHHHcCCEEEcCCeEEEEEE--cCCeEEEEECCCCEE-EcCEEEEeeC
Confidence 333456799999999999986 445566766677754 8999999943
No 148
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.27 E-value=3.4 Score=39.80 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=32.2
Q ss_pred cCCCCEEEeecCCCCCC-hhHHHHHHHHHHHHHHhhhcc
Q 024990 221 DVKRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~-ie~A~~SG~~aA~~l~~~l~~ 258 (259)
+..++||.+||-..|.. +-.|+..|+.||+.|...|.+
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34578999999887765 589999999999999988864
No 149
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=77.26 E-value=6.1 Score=36.22 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=32.3
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+..++++++++.|.+|+. ++++ ..+...+|+....+|.||+++
T Consensus 217 l~~~gI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~i~~D~vi~a~ 261 (450)
T TIGR01421 217 YEKEGINVHKLSKPVKVEK--TVEGKLVIHFEDGKSIDDVDELIWAI 261 (450)
T ss_pred HHHcCCEEEcCCEEEEEEE--eCCceEEEEECCCcEEEEcCEEEEee
Confidence 3456889999999999986 4333 566666773224899999994
No 150
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=77.01 E-value=4.4 Score=36.87 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=34.3
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+....+...+..+++|+++++|.+|+. +++.+.+.++++ . ..+|.||+|+
T Consensus 193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~-i~~d~vi~a~ 242 (444)
T PRK09564 193 ITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-E-YEADVVIVAT 242 (444)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-E-EEcCEEEECc
Confidence 333444445567899999999999975 444445555444 4 3899999994
No 151
>PRK13984 putative oxidoreductase; Provisional
Probab=76.81 E-value=3.3 Score=39.53 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=32.7
Q ss_pred cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||...+..+-.|+..|+.||+.|...|.
T Consensus 566 Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 3467999999999888888999999999999988774
No 152
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=76.74 E-value=6.5 Score=36.51 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=34.1
Q ss_pred cCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecCCCCCCc
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSP 70 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~~~~p~~ 70 (259)
+..+++|++++.|.+|+. ++++ ..+...+|+.+ .+|.||+|+-..|..
T Consensus 242 ~~~GI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~i-~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 242 RANGINIMTNENPAKVTL--NADGSKHVTFESGKTL-DVDVVMMAIGRVPRT 290 (486)
T ss_pred HHcCCEEEcCCEEEEEEE--cCCceEEEEEcCCCEE-EcCEEEEeeCCCcCc
Confidence 346789999999999986 4333 45655667654 899999995444443
No 153
>PRK13748 putative mercuric reductase; Provisional
Probab=76.70 E-value=5.6 Score=37.48 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=33.3
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+..+++|++++.|.+|+. +++++.+.+.+|+ + .+|.||+|+
T Consensus 318 ~~l~~~gI~i~~~~~v~~i~~--~~~~~~v~~~~~~-i-~~D~vi~a~ 361 (561)
T PRK13748 318 AAFRAEGIEVLEHTQASQVAH--VDGEFVLTTGHGE-L-RADKLLVAT 361 (561)
T ss_pred HHHHHCCCEEEcCCEEEEEEe--cCCEEEEEecCCe-E-EeCEEEEcc
Confidence 334455789999999999987 5566777665664 3 899999994
No 154
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=76.61 E-value=4.3 Score=35.79 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=34.6
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
+....+...+..++++++++.|.+|+. + .+.+.+|+.+ .+|.||+|
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i-~~D~vi~a 238 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTL-PADAILWA 238 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEE-ecCEEEEc
Confidence 445555666677899999999999864 2 3555677664 89999999
No 155
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=76.47 E-value=5.8 Score=36.10 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+...+..++++++++.|.+|+. +++++.+++ +|+.+ .+|.||+|+
T Consensus 202 ~~~~~~l~~~GI~i~~~~~V~~i~~--~~~~v~v~~-~g~~i-~~D~viva~ 249 (438)
T PRK07251 202 ALAKQYMEEDGITFLLNAHTTEVKN--DGDQVLVVT-EDETY-RFDALLYAT 249 (438)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEe--cCCEEEEEE-CCeEE-EcCEEEEee
Confidence 3334444556899999999999987 555666654 45554 899999994
No 156
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=76.37 E-value=5.4 Score=36.67 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=31.3
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEcc--CCC-ccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~--~G~-~~~~~d~VIla~ 64 (259)
+..+++|++++.|.+|+. +++++.+... +|+ ....+|.||+|+
T Consensus 224 ~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~i~~D~vi~a~ 269 (466)
T PRK07818 224 KKLGVKILTGTKVESIDD--NGSKVTVTVSKKDGKAQELEADKVLQAI 269 (466)
T ss_pred HHCCCEEEECCEEEEEEE--eCCeEEEEEEecCCCeEEEEeCEEEECc
Confidence 345899999999999987 5556655443 563 124899999994
No 157
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.47 E-value=4.4 Score=39.08 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=32.1
Q ss_pred cCCCCEEEeecCCCCCC-hhHHHHHHHHHHHHHHhhhcc
Q 024990 221 DVKRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~-ie~A~~SG~~aA~~l~~~l~~ 258 (259)
+..++||.+||...|.+ +-.|+..|+.||+.|...|+.
T Consensus 615 Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 615 TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 34578999999987764 689999999999999988863
No 158
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=75.17 E-value=3.5 Score=36.40 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=32.3
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCC--CceEEEcc--CC--CccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDK--NLWSVSGL--DG--QSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~--~~~~v~~~--~G--~~~~~~d~VIla~ 64 (259)
+-.|+.++..++++++|.+|++..++ ..|+|++. +| .. ..+++||+++
T Consensus 102 ~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~-~~ar~vVla~ 155 (341)
T PF13434_consen 102 RWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET-YRARNVVLAT 155 (341)
T ss_dssp HHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE-EEESEEEE--
T ss_pred HHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE-EEeCeEEECc
Confidence 33466676568999999999984222 24999873 33 33 3899999994
No 159
>PRK06370 mercuric reductase; Validated
Probab=74.52 E-value=6.5 Score=36.10 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc--cCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~--~~G~~~~~~d~VIla~ 64 (259)
.......+..+++|++++.|.+|+. ++++..+.. .++.....+|.||+|+
T Consensus 216 ~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~Vi~A~ 267 (463)
T PRK06370 216 AAVREILEREGIDVRLNAECIRVER--DGDGIAVGLDCNGGAPEITGSHILVAV 267 (463)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEECc
Confidence 3344444557899999999999987 555554433 2332224899999994
No 160
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=74.46 E-value=6.1 Score=36.27 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc--CC-CccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DG-QSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~--~G-~~~~~~d~VIla~ 64 (259)
...+...+..+++|++++.|.+|+. +++++.++.. ++ +. ..+|.||+|+
T Consensus 211 ~~l~~~l~~~gV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~-i~~D~ViiA~ 262 (463)
T TIGR02053 211 AAVEEALAEEGIEVVTSAQVKAVSV--RGGGKIITVEKPGGQGE-VEADELLVAT 262 (463)
T ss_pred HHHHHHHHHcCCEEEcCcEEEEEEE--cCCEEEEEEEeCCCceE-EEeCEEEEeE
Confidence 3444444556899999999999987 5555555543 22 33 4899999993
No 161
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=74.14 E-value=7.1 Score=35.45 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=32.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
+...+...+..+++|++++.|.+|.. + . |.+++|+.+ .+|.||++
T Consensus 231 ~~~~~~~L~~~gV~v~~~~~v~~v~~--~--~--v~~~~g~~i-~~d~vi~~ 275 (424)
T PTZ00318 231 RKYGQRRLRRLGVDIRTKTAVKEVLD--K--E--VVLKDGEVI-PTGLVVWS 275 (424)
T ss_pred HHHHHHHHHHCCCEEEeCCeEEEEeC--C--E--EEECCCCEE-EccEEEEc
Confidence 33344444567899999999999975 2 3 445678764 89999999
No 162
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=73.86 E-value=6.8 Score=36.14 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccC--CC-ccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLD--GQ-SLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~--G~-~~~~~d~VIla~ 64 (259)
..+++|++++.|.+|+. ++++..+...+ |+ ....+|.||+|+
T Consensus 236 ~~gi~i~~~~~v~~i~~--~~~~v~v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 236 KQGLDIHLGVKIGEIKT--GGKGVSVAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred HcCcEEEeCcEEEEEEE--cCCEEEEEEEeCCCceeEEEcCEEEEcc
Confidence 45789999999999987 55566665433 43 124899999994
No 163
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=73.78 E-value=5.3 Score=35.56 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=31.5
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+.+++..+++++++++|.+|+. ++ ..|++ +|..+ .||+||+||
T Consensus 65 ~~~~~~~gv~~~~~~~V~~id~--~~--~~v~~-~~~~~-~yd~LVlAT 107 (377)
T PRK04965 65 GEFAEQFNLRLFPHTWVTDIDA--EA--QVVKS-QGNQW-QYDKLVLAT 107 (377)
T ss_pred HHHHHhCCCEEECCCEEEEEEC--CC--CEEEE-CCeEE-eCCEEEECC
Confidence 3455567888999999999987 43 35555 45444 899999994
No 164
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=73.67 E-value=5.4 Score=36.83 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=31.4
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||...+. .+..|+..|+.||..|...|.
T Consensus 428 Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999998765 578999999999999988774
No 165
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=73.46 E-value=5.6 Score=35.81 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCCEEEeecC------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++++++||. +.|.+|.-|++||..||+.+.+.+
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 4689999985 457899999999999999998654
No 166
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=73.41 E-value=6.6 Score=35.57 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
...+...+..++++++++.|.+|+. ++ .+ +...+|+.+ .+|.||+|
T Consensus 183 ~~~~~~l~~~gV~v~~~~~v~~i~~--~~-~~-v~~~~g~~i-~~D~vi~a 228 (427)
T TIGR03385 183 QIVEEELKKHEINLRLNEEVDSIEG--EE-RV-KVFTSGGVY-QADMVILA 228 (427)
T ss_pred HHHHHHHHHcCCEEEeCCEEEEEec--CC-CE-EEEcCCCEE-EeCEEEEC
Confidence 3334444556899999999999986 43 33 344567654 89999999
No 167
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=73.36 E-value=2.1 Score=38.68 Aligned_cols=49 Identities=18% Similarity=0.080 Sum_probs=38.4
Q ss_pred HHHHHhcC-------CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCC
Q 024990 14 ICKALCHQ-------PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 65 (259)
Q Consensus 14 l~~~La~~-------l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~ 65 (259)
|+++|++. -+++|+-|+.|.++.. +.....+.+.||..+ ..|.||+|+-
T Consensus 391 LPeyls~wt~ekir~~GV~V~pna~v~sv~~--~~~nl~lkL~dG~~l-~tD~vVvavG 446 (659)
T KOG1346|consen 391 LPEYLSQWTIEKIRKGGVDVRPNAKVESVRK--CCKNLVLKLSDGSEL-RTDLVVVAVG 446 (659)
T ss_pred hHHHHHHHHHHHHHhcCceeccchhhhhhhh--hccceEEEecCCCee-eeeeEEEEec
Confidence 46666544 3578899999999998 555678888999876 8999999943
No 168
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=73.13 E-value=5.9 Score=36.99 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=32.4
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccC---CC-ccccccEEEec
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVAS 63 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~---G~-~~~~~d~VIla 63 (259)
|...+++|+.+++|.+|.. ++++|.|+..+ |+ ....++.||.|
T Consensus 165 A~~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~~i~a~~VVnA 211 (508)
T PRK12266 165 AAERGAEILTRTRVVSARR--ENGLWHVTLEDTATGKRYTVRARALVNA 211 (508)
T ss_pred HHHcCCEEEcCcEEEEEEE--eCCEEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 4456889999999999987 66678776543 53 12389999999
No 169
>PRK07538 hypothetical protein; Provisional
Probab=72.55 E-value=8.2 Score=34.77 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=26.3
Q ss_pred CCCEEEeecCCC------CCChhHHHHHHHHHHHHHHh
Q 024990 223 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 223 ~~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~ 254 (259)
.++|.+.||... |.+++-|++.|..+|+.|..
T Consensus 296 ~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~ 333 (413)
T PRK07538 296 RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAA 333 (413)
T ss_pred CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 468999999653 56899999999999988753
No 170
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=72.40 E-value=7.1 Score=35.49 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEcc-CCCcc-ccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQSL-GQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-~G~~~-~~~d~VIla~ 64 (259)
..++++++++.|.+|+. +++.+.++.. +|..+ ..||++|+||
T Consensus 68 ~~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~~~~yd~lviAt 111 (444)
T PRK09564 68 KSGIDVKTEHEVVKVDA--KNKTITVKNLKTGSIFNDTYDKLMIAT 111 (444)
T ss_pred HCCCeEEecCEEEEEEC--CCCEEEEEECCCCCEEEecCCEEEECC
Confidence 35788899999999998 6666777542 34433 1399999993
No 171
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=72.08 E-value=9 Score=35.55 Aligned_cols=51 Identities=14% Similarity=-0.022 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCC--ccccccEEEecCC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASDK 65 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~--~~~~~d~VIla~~ 65 (259)
...+...+..+++|++++.|.+|+. .+++..++..+|+ ....+|.||+|+-
T Consensus 224 ~~l~~~L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~~D~vl~a~G 276 (484)
T TIGR01438 224 NKVGEHMEEHGVKFKRQFVPIKVEQ--IEAKVKVTFTDSTNGIEEEYDTVLLAIG 276 (484)
T ss_pred HHHHHHHHHcCCEEEeCceEEEEEE--cCCeEEEEEecCCcceEEEeCEEEEEec
Confidence 3333344556899999999999986 4455556544442 1238999999943
No 172
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=71.02 E-value=7.1 Score=35.04 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..++++++++.|.+|+. ++. .|.+++|+.+ .||++|+||
T Consensus 70 ~~~i~~~~g~~V~~id~--~~~--~v~~~~g~~~-~yd~LViAT 108 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGR--DTR--ELVLTNGESW-HWDQLFIAT 108 (396)
T ss_pred HCCCEEEcCCEEEEEEC--CCC--EEEECCCCEE-EcCEEEEcc
Confidence 35688899999999987 433 4555677664 899999994
No 173
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.90 E-value=6 Score=36.29 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.0
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l 256 (259)
+..++||.+||...+. .+-.|+..|+.||+.|...|
T Consensus 413 Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 413 TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 3457899999998765 57899999999999987754
No 174
>PRK12831 putative oxidoreductase; Provisional
Probab=70.72 E-value=6.4 Score=36.31 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=31.3
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-..|. .+-.|+..|+.||..|...|.
T Consensus 424 Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999988765 678999999999999988774
No 175
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=70.46 E-value=9.2 Score=36.26 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=35.2
Q ss_pred CCCchHHHHHHhc---CCCCeeEcceEEEEEEeecCCCce---EEEccCCCc-cccc-cEEEecCCCCC
Q 024990 8 VPGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQS-LGQF-NGVVASDKNVV 68 (259)
Q Consensus 8 ~~Gm~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~---~v~~~~G~~-~~~~-d~VIla~~~~p 68 (259)
..| .+|...|.+ ..+++|+++++|.+|.. +++++ .+. .+|.. .+.+ +.|||||-+-.
T Consensus 214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~--~~g~V~GV~~~-~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTD--DGGRVTGAVVD-HRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEe--cCCEEEEEEEE-ECCcEEEEEcCCEEEEecCCcc
Confidence 345 667776643 46899999999999985 44332 222 24432 2345 58999954333
No 176
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=69.06 E-value=8.9 Score=35.38 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.6
Q ss_pred CCCCEEEeecCCCCCC-hhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g~~-ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||...+.. +..|+..|+.||+.|...|+
T Consensus 430 ~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 430 TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999987664 58899999999999988774
No 177
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.57 E-value=6.3 Score=36.68 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=32.7
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCC--C-ccccccEEEec
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--Q-SLGQFNGVVAS 63 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G--~-~~~~~d~VIla 63 (259)
+...+++|+.+++|.+|+. +++.|.|+..++ + ....++.||.|
T Consensus 165 a~~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~g~~~~i~a~~VVnA 210 (502)
T PRK13369 165 AAERGATILTRTRCVSARR--EGGLWRVETRDADGETRTVRARALVNA 210 (502)
T ss_pred HHHCCCEEecCcEEEEEEE--cCCEEEEEEEeCCCCEEEEEecEEEEC
Confidence 4456889999999999998 666788876554 2 11389999999
No 178
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=68.43 E-value=8 Score=32.64 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCCEEEee---cCCC-----CCChhHHHHHHHHHHHHHHhhhcc
Q 024990 222 VKRRLAICG---DFCV-----SPNVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 222 ~~~~l~laG---D~~~-----g~~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
..++|++|| .... |+.+-+=+.||++||+.|+++|+.
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 478999999 2222 456888899999999999999874
No 179
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=67.16 E-value=6.8 Score=33.12 Aligned_cols=35 Identities=20% Similarity=0.004 Sum_probs=28.9
Q ss_pred CCCCEEEeecCCC--CCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~~--g~~ie~A~~SG~~aA~~l~~~l 256 (259)
..++||.+||-.. ...+..|+..|+.||..|...|
T Consensus 264 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 4578999999875 3468899999999999987654
No 180
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=67.07 E-value=11 Score=34.77 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=30.6
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEcc---CC--CccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGL---DG--QSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~---~G--~~~~~~d~VIla~ 64 (259)
.+..+++|++++.|.+|+. +++++.++.. +| +. ..+|.||+|+
T Consensus 225 l~~~gV~i~~~~~V~~i~~--~~~~v~v~~~~~~~g~~~~-i~~D~vi~a~ 272 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATA--GADGVSLTLEPAAGGAAET-LQADYVLVAI 272 (466)
T ss_pred HHhcCCEEEECcEEEEEEE--cCCeEEEEEEEcCCCceeE-EEeCEEEEcc
Confidence 3345789999999999987 5556655432 23 33 3899999993
No 181
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=67.02 E-value=12 Score=35.52 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=27.8
Q ss_pred CCCCEEEeecCC---------C-CCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFC---------V-SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~---------~-g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+-. . |.++-.|+.+|+.|++.+.+.+
T Consensus 523 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 523 PIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 567899999532 2 4479999999999999997764
No 182
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=67.01 E-value=9.3 Score=33.66 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=30.3
Q ss_pred CCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.|||-..+ ..+..|+..|..||+.|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 45799999998764 4688999999999999988763
No 183
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=66.81 E-value=7.6 Score=35.61 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||...+. .+..|+..|+.||+.|...|+
T Consensus 416 s~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 416 SLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999988663 678899999999999988774
No 184
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=66.68 E-value=12 Score=34.21 Aligned_cols=49 Identities=14% Similarity=-0.033 Sum_probs=32.7
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecCCCceEE-EccCCCc-cccccEEEec
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQS-LGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~v-~~~~G~~-~~~~d~VIla 63 (259)
.+.+.|.+ ..+++|++++.|.+++. +++++.+ .+.+|+. ...+|.||+|
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~~~V~~v~~~~g~~~~i~AD~VVLA 313 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEF--EGGRVTAVWTRNHGDIPLRARHFVLA 313 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCCEEEEEEeeCCceEEEECCEEEEe
Confidence 34444443 34789999999999997 5555543 3334532 2379999999
No 185
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=66.30 E-value=10 Score=33.89 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=28.7
Q ss_pred CCCEEEeecC------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++++++||. +.|.+|.-|++||..||+.|.+.+
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 4579999985 457799999999999999998765
No 186
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=65.90 E-value=9.7 Score=38.03 Aligned_cols=40 Identities=8% Similarity=0.226 Sum_probs=30.8
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|.+|+. +. ..|.+.+|+.+ .||++|+||
T Consensus 70 ~~~gI~~~~g~~V~~Id~--~~--~~V~~~~G~~i-~yD~LVIAT 109 (847)
T PRK14989 70 EKHGIKVLVGERAITINR--QE--KVIHSSAGRTV-FYDKLIMAT 109 (847)
T ss_pred HhCCCEEEcCCEEEEEeC--CC--cEEEECCCcEE-ECCEEEECC
Confidence 345789999999999987 43 35666778664 899999994
No 187
>PTZ00058 glutathione reductase; Provisional
Probab=65.77 E-value=17 Score=34.47 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=31.7
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~~~~~~d~VIla~ 64 (259)
....+..+++|++++.|.+|+. +++ ++.+...++.....+|.||+|+
T Consensus 285 ~~~L~~~GV~i~~~~~V~~I~~--~~~~~v~v~~~~~~~~i~aD~VlvA~ 332 (561)
T PTZ00058 285 ENDMKKNNINIITHANVEEIEK--VKEKNLTIYLSDGRKYEHFDYVIYCV 332 (561)
T ss_pred HHHHHHCCCEEEeCCEEEEEEe--cCCCcEEEEECCCCEEEECCEEEECc
Confidence 3334446889999999999986 333 4555433443224899999994
No 188
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=65.19 E-value=9.8 Score=34.98 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=28.7
Q ss_pred CCCEEEeecC------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.+++++.||. +.|.+|.-|++||..||+.+.+.+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 4579999985 457899999999999999998654
No 189
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=64.75 E-value=11 Score=31.88 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=28.6
Q ss_pred CCCCEEEee----cCC----CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICG----DFC----VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laG----D~~----~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++|++|| ... .|+.+-+=+.||++||+.|+++|+
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 578999999 222 245788888999999999999874
No 190
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=64.69 E-value=9.1 Score=38.68 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=31.6
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-..|. .+-.|+..|+.||+.|...|.
T Consensus 590 Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 590 TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999999876 588999999999999988764
No 191
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=64.46 E-value=12 Score=33.89 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHh---cCCCCeeEcceEEEEEEeecCCC----ceEEEccCCCc-cccccEEEecC
Q 024990 13 SICKALC---HQPGVESKFGVGVGRFEWLEDKN----LWSVSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La---~~l~~~i~~~~~V~~I~~~~~~~----~~~v~~~~G~~-~~~~d~VIla~ 64 (259)
.+.+.|. +..+++|+++++|.+|.. +++ ++++...+|+. ...++.||+|+
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAt 188 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLAT 188 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEec
Confidence 3444443 345789999999999987 433 24454445542 23689999994
No 192
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=64.24 E-value=13 Score=32.79 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHhcCCCCeeEcceEEEEEEee-cCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWL-EDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGR 78 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~-~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~ 78 (259)
+..+..+|+.++.+..|..++.. ..+..+.|.+.+|..+ .++.+|+| +-+. +.++|+.
T Consensus 160 ~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y-~akkiI~t---~GaW-i~klL~~ 218 (399)
T KOG2820|consen 160 QDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY-HAKKIIFT---VGAW-INKLLPT 218 (399)
T ss_pred HHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCee-ecceEEEE---ecHH-HHhhcCc
Confidence 34466789999999999999852 1345678888899766 89999999 5554 4566664
No 193
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=64.10 E-value=11 Score=34.97 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=30.8
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-..+. .+..|+..|+.||..|...|.
T Consensus 442 Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 442 TSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467899999988765 577899999999999988774
No 194
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=63.84 E-value=13 Score=31.52 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=33.4
Q ss_pred cCCCCeeEcceEEEEEEeecCCCc---eEEEccCCC---ccccccEEEecCCCCCCcchhhhcCC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ---SLGQFNGVVASDKNVVSPRFRDVTGR 78 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~---~~~~~d~VIla~~~~p~~~a~~ll~~ 78 (259)
+.-+.+|++++.|.+|....++++ +.+.+.++. ....++.|||| .=+=...+||-.
T Consensus 204 ~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIla---AGai~Tp~LLl~ 265 (296)
T PF00732_consen 204 KRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILA---AGAIGTPRLLLR 265 (296)
T ss_dssp TTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE----SHHHHHHHHHHH
T ss_pred ccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEec---cCCCCChhhhcc
Confidence 333689999999999965112332 344455554 23368999999 444444455543
No 195
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=63.27 E-value=9.8 Score=35.98 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=31.1
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-..+. .+-.|+..|+.||..|...|.
T Consensus 407 ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 407 TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 3467899999988755 688999999999999988764
No 196
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=62.44 E-value=18 Score=31.86 Aligned_cols=47 Identities=26% Similarity=0.218 Sum_probs=34.2
Q ss_pred HHHHHHhcC---CC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 13 SICKALCHQ---PG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~---l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+++.|++. ++ ..+..++.|..++. +.+.|.|.+.+|+ ..+|+||+|
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~v~t~~g~--i~a~~vv~a 207 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLER--DGRVVGVETDGGT--IEADKVVLA 207 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEe--cCcEEEEEeCCcc--EEeCEEEEc
Confidence 344444433 34 46777999999987 2256889988887 389999999
No 197
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=61.69 E-value=6.6 Score=35.66 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=23.3
Q ss_pred cCCCCEEEeecCC-----CCC-ChhHHHHHHHHHHH
Q 024990 221 DVKRRLAICGDFC-----VSP-NVEGAILSGLDAAS 250 (259)
Q Consensus 221 ~~~~~l~laGD~~-----~g~-~ie~A~~SG~~aA~ 250 (259)
...++||+||+.+ .|| .+.-||.||..|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 4578999999544 355 69999999999986
No 198
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=61.63 E-value=17 Score=33.84 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCCCEEEeecC---------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDF---------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~---------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+- +.|.++-.|+.+|+.|++.+.+..
T Consensus 460 pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 460 PITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred EeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 56789999963 345579999999999999887654
No 199
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=61.22 E-value=11 Score=37.04 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=31.6
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-..|. .+-.|+.+|+.||..|...|.
T Consensus 713 Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999998765 578999999999999998875
No 200
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=60.51 E-value=18 Score=33.62 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=27.2
Q ss_pred cCCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
..-++||.||+... |.++-.|+-+|+.|++.+.+.
T Consensus 344 t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 344 TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 45679999998642 346889999999999987654
No 201
>PRK07512 L-aspartate oxidase; Provisional
Probab=60.26 E-value=11 Score=35.27 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=26.6
Q ss_pred cCCCCEEEeecCCC-C---------CChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV-S---------PNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~-g---------~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.||+-.. | .++-.|+-.|+.|++.+.+.
T Consensus 352 t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 352 SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45779999998642 2 25788899999999987654
No 202
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=60.14 E-value=16 Score=34.81 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=30.1
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCce---EEEccCCCccccc-cEEEecCC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQF-NGVVASDK 65 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~---~v~~~~G~~~~~~-d~VIla~~ 65 (259)
++..+++|+++++|.+|.. +++++ .+...++...+.+ +.||+|+-
T Consensus 227 a~~~Gv~i~~~t~v~~l~~--~~g~v~GV~~~~~~~~~~i~a~k~VVlAtG 275 (581)
T PRK06134 227 AEDLGVRIWESAPARELLR--EDGRVAGAVVETPGGLQEIRARKGVVLAAG 275 (581)
T ss_pred HHhCCCEEEcCCEEEEEEE--eCCEEEEEEEEECCcEEEEEeCCEEEEcCC
Confidence 3445899999999999886 44443 3443344322367 99999953
No 203
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=60.03 E-value=12 Score=31.07 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCCCEEEeec---CC-----CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGD---FC-----VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD---~~-----~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++|++||= -. .|+.+-+=+.||+++|+.++++|.
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 5779999992 22 356788999999999999999885
No 204
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=59.19 E-value=15 Score=37.43 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=31.4
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||...|. .+-.|+..|+.||..|...|.
T Consensus 718 Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 718 TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999998775 578999999999999988763
No 205
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=58.99 E-value=14 Score=37.54 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=31.1
Q ss_pred CCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 223 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 223 ~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.++||.|||-.....+..|+.+|..||..+...++
T Consensus 438 v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 438 VQGCILAGAANGLFGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred CCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcC
Confidence 47899999998888999999999999999887764
No 206
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=58.79 E-value=20 Score=32.71 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=29.8
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+..++++++++.|.+|+. + .++.++|+.+ .+|.||+|+
T Consensus 197 ~~l~~~gI~i~~~~~v~~i~~----~--~v~~~~g~~~-~~D~vl~a~ 237 (438)
T PRK13512 197 DELDKREIPYRLNEEIDAING----N--EVTFKSGKVE-HYDMIIEGV 237 (438)
T ss_pred HHHHhcCCEEEECCeEEEEeC----C--EEEECCCCEE-EeCEEEECc
Confidence 334456889999999999964 2 3555567654 899999993
No 207
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=58.55 E-value=21 Score=32.91 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=28.5
Q ss_pred CeeEcceEEEEEEeecCCCceEEEccC--C-CccccccEEEecC
Q 024990 24 VESKFGVGVGRFEWLEDKNLWSVSGLD--G-QSLGQFNGVVASD 64 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~~~~v~~~~--G-~~~~~~d~VIla~ 64 (259)
++|++++.|.+|+. +++++.++..+ | .....+|.||+|+
T Consensus 229 v~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 229 FNIMLETKVTAVEA--KEDGIYVTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred eEEEcCCEEEEEEE--cCCEEEEEEEeCCCcceEEEeCEEEEee
Confidence 78899999999987 55666665433 3 1123899999994
No 208
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=57.41 E-value=16 Score=35.24 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=30.8
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-..+. .+-.|+..|+.||..|...|.
T Consensus 464 Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 464 TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 3467899999988665 468999999999999988763
No 209
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=57.30 E-value=13 Score=36.09 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+..+++++++.+|.+|.+ +. + .|++++|..+ .+|.+|+||
T Consensus 67 dwy~~~~i~L~~~~~v~~idr--~~-k-~V~t~~g~~~-~YDkLilAT 109 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDR--AN-K-VVTTDAGRTV-SYDKLIIAT 109 (793)
T ss_pred hhHHHcCcEEEcCCeeEEecc--Cc-c-eEEccCCcEe-ecceeEEec
Confidence 445667889999999999997 43 3 5777888764 899999994
No 210
>PRK10262 thioredoxin reductase; Provisional
Probab=57.23 E-value=24 Score=30.48 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=30.0
Q ss_pred cCCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhcc
Q 024990 221 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
+..++||.|||-...+ .+--|+..|..||..+...|..
T Consensus 277 t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 277 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHh
Confidence 4568999999988543 3556999999999999887753
No 211
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=57.14 E-value=21 Score=31.85 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=32.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..|-+.|.+.++..|++++.|.+++. +++++ .+|+.+ .+|.||-|
T Consensus 89 ~~f~~~l~~~l~~~i~~~~~V~~v~~----~~v~l--~dg~~~-~A~~VI~A 133 (370)
T TIGR01789 89 TRFHEGLLQAFPEGVILGRKAVGLDA----DGVDL--APGTRI-NARSVIDC 133 (370)
T ss_pred HHHHHHHHHhhcccEEecCEEEEEeC----CEEEE--CCCCEE-EeeEEEEC
Confidence 34667776666655788999998853 35666 577664 89999999
No 212
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=55.67 E-value=27 Score=32.02 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=33.3
Q ss_pred hHHHHHHh---cCCCCeeEcceEEEEEEeecCCCceE-EEc--cCCC-ccccccEEEecC
Q 024990 12 NSICKALC---HQPGVESKFGVGVGRFEWLEDKNLWS-VSG--LDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La---~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~--~~G~-~~~~~d~VIla~ 64 (259)
..+.+.|. +..+++|+++++|.+|.. +++++. |.. .+|+ ....++.||+|+
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~--~~g~v~gv~~~~~~g~~~~i~a~~VIlAt 188 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALEL--DDGRFVGARAGSAAGGAERIRAKAVVLAA 188 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCeEEEEEEEccCCceEEEECCEEEECC
Confidence 44555553 345789999999999987 555543 332 3443 223789999994
No 213
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=54.85 E-value=9.6 Score=34.37 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=22.7
Q ss_pred cCCCCEEEeecC-----CCCC-ChhHHHHHHHHHH
Q 024990 221 DVKRRLAICGDF-----CVSP-NVEGAILSGLDAA 249 (259)
Q Consensus 221 ~~~~~l~laGD~-----~~g~-~ie~A~~SG~~aA 249 (259)
...++||+||+. ..|+ ++.-||.||..|+
T Consensus 365 k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 365 KLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred cCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 346899999943 3344 7999999999987
No 214
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=54.03 E-value=27 Score=32.63 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=25.5
Q ss_pred CCCCEEEeecCC---------C-CCChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFC---------V-SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~---------~-g~~ie~A~~SG~~aA~~l~~ 254 (259)
+-++||.||+-. . |.++-.|+.+|+.|++.+..
T Consensus 468 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 468 PIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred EeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 467899999632 1 34599999999999998754
No 215
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=53.67 E-value=16 Score=33.50 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=37.0
Q ss_pred ecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceE--EEccCCCccccccEEEec
Q 024990 6 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWS--VSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~--v~~~~G~~~~~~d~VIla 63 (259)
.+.-|.+.|++..++-. |..+++|++|.+|.. ++++.. |. .+|+.+ .++.||..
T Consensus 226 yP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~--~~~g~~~gV~-s~ge~v-~~k~vI~d 284 (438)
T PF00996_consen 226 YPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVV--DEDGKVIGVK-SEGEVV-KAKKVIGD 284 (438)
T ss_dssp EETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEE--ETTTEEEEEE-ETTEEE-EESEEEEE
T ss_pred EEccCCccHHHHHHHHhhhcCcEEEeCCccceeee--ecCCeEEEEe-cCCEEE-EcCEEEEC
Confidence 45668999999887653 678999999999987 444443 44 367654 89999987
No 216
>PLN02661 Putative thiazole synthesis
Probab=53.33 E-value=19 Score=31.97 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCCCEEEeec---CC-----CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGD---FC-----VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD---~~-----~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++|++||= -. .|+.+-+=+.||+++|+.|+++|+
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 4789999992 12 245788999999999999999885
No 217
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=52.93 E-value=28 Score=31.99 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=30.0
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceE-EEccCCC-ccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~-~~~~~d~VIla~ 64 (259)
.+..+++|++++.|.+|+.. .+++.. +...+|+ ....+|.||+|+
T Consensus 231 l~~~gI~i~~~~~v~~i~~~-~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 231 LKKLGVRVVTGAKVLGLTLK-KDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred HHhcCCEEEeCcEEEEEEEe-cCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 34568999999999999741 133443 3344664 123899999994
No 218
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=52.62 E-value=36 Score=29.59 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=30.4
Q ss_pred cCCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+.-++||.|||-.... .+..|.-.|-.||..+.+.|.
T Consensus 263 TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 263 TSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred cCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhh
Confidence 4577999999998775 488899999999988877664
No 219
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=51.23 E-value=20 Score=36.47 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
..++||.+||-..+. .+..|+..|+.||..|+..
T Consensus 804 s~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 804 NITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 457899999987654 6899999999999999854
No 220
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=51.21 E-value=30 Score=33.02 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.0
Q ss_pred CCCCEEEeecCC---------C-CCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFC---------V-SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~---------~-g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+-. . |.++-.|+.+|+.|++.+.+..
T Consensus 526 pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 526 VIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 567899999532 1 3468999999999999887654
No 221
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=51.09 E-value=37 Score=32.36 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceE----EEccCCC-ccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~----v~~~~G~-~~~~~d~VIla~ 64 (259)
|.+++.+..+++|..++.|.+|.. +++++. +...+|+ ....++.||+||
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVIlAT 192 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMAT 192 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEE--eCCEEEEEEEEEcCCCcEEEEECCEEEECC
Confidence 333333333678899999999986 445443 3345664 224799999994
No 222
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=51.03 E-value=23 Score=36.08 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=30.7
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-..+. .+-.|+..|+.||+.|...+.
T Consensus 805 Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 805 TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 3457999999987654 789999999999999987653
No 223
>PLN02546 glutathione reductase
Probab=50.75 E-value=30 Score=32.81 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=30.5
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+..+++|++++.|.+|+.. +++...+.+.+|+. ..+|.||+++
T Consensus 303 L~~~GV~i~~~~~v~~i~~~-~~g~v~v~~~~g~~-~~~D~Viva~ 346 (558)
T PLN02546 303 MSLRGIEFHTEESPQAIIKS-ADGSLSLKTNKGTV-EGFSHVMFAT 346 (558)
T ss_pred HHHCCcEEEeCCEEEEEEEc-CCCEEEEEECCeEE-EecCEEEEee
Confidence 34568999999999999861 23345565555543 2589999994
No 224
>PRK07121 hypothetical protein; Validated
Probab=50.37 E-value=35 Score=31.61 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.3
Q ss_pred CCCCEEEeec---------CCCCCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGD---------FCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD---------~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+-++||.||+ |..|.++-.|+.+|+.|++.+.++
T Consensus 448 pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 448 PIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 4678999995 334668999999999999988654
No 225
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=50.14 E-value=36 Score=32.17 Aligned_cols=49 Identities=16% Similarity=0.020 Sum_probs=30.8
Q ss_pred CCeeEcceEEEEEEeecCC-Cce---EEEcc-CCCc-cccccEEEecCCCCCCcc
Q 024990 23 GVESKFGVGVGRFEWLEDK-NLW---SVSGL-DGQS-LGQFNGVVASDKNVVSPR 71 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~-~~~---~v~~~-~G~~-~~~~d~VIla~~~~p~~~ 71 (259)
+++|++++.|.+|...+++ +++ .+.+. +|+. ...|+.||||+..+-.++
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpR 282 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQ 282 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHH
Confidence 4799999999999972112 222 23332 4543 248999999954444443
No 226
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=50.05 E-value=42 Score=30.68 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=28.7
Q ss_pred hcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCC-ccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~-~~~~~d~VIla~ 64 (259)
.+.. ++|++++.|.+|+. +++ ++.++..+|+ ....+|.||+|+
T Consensus 220 l~~~-I~i~~~~~v~~i~~--~~~~~v~~~~~~~~~~~i~~D~vi~a~ 264 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEK--SGDEKVEELEKGGKTETIEADYVLVAT 264 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEE--cCCceEEEEEcCCceEEEEeCEEEEcc
Confidence 3344 88999999999986 443 4555332332 224899999993
No 227
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.40 E-value=38 Score=31.86 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=27.0
Q ss_pred cCCCCEEEeecCCC---------CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV---------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~---------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.||+-.. |.++-.|+.+|+.|++.+...
T Consensus 359 t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 359 TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 46779999997532 336778999999999988654
No 228
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=49.38 E-value=38 Score=30.56 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=27.8
Q ss_pred cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
...++||+||+..+..+.+-|..+|..|+-.+..++
T Consensus 353 k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~ 388 (392)
T PF01134_consen 353 KKIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRL 388 (392)
T ss_dssp SSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 347799999999988888888889999987766554
No 229
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=48.94 E-value=82 Score=28.48 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~ 64 (259)
+.|.+.-+++|. +..|..|.. ++++ +-|.+.+|..+ .+|.||+||
T Consensus 103 ~~l~~~~nl~i~-~~~V~~l~~--e~~~v~GV~~~~g~~~-~a~~vVlaT 148 (392)
T PF01134_consen 103 EKLESHPNLTII-QGEVTDLIV--ENGKVKGVVTKDGEEI-EADAVVLAT 148 (392)
T ss_dssp HHHHTSTTEEEE-ES-EEEEEE--CTTEEEEEEETTSEEE-EECEEEE-T
T ss_pred HHHhcCCCeEEE-EcccceEEe--cCCeEEEEEeCCCCEE-ecCEEEEec
Confidence 344443467774 678999987 5554 45778888764 899999993
No 230
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=48.28 E-value=30 Score=31.83 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=33.2
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCce--EEEccCCCccccccEEEec
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLW--SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~--~v~~~~G~~~~~~d~VIla 63 (259)
...+....|...|++++.++ |..+.. +++++ .|++.+|+++ ++|.||=|
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~--~~~g~i~~v~~~~g~~i-~ad~~IDA 206 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVEL--DEDGRITAVRLDDGRTI-EADFFIDA 206 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE---TTSEEEEEEETTSEEE-EESEEEE-
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEE--cCCCCEEEEEECCCCEE-EEeEEEEC
Confidence 34556666777799988775 777876 44554 5778888765 89999988
No 231
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=48.06 E-value=25 Score=32.36 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=31.9
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|.+++. ... .|.+.+|+.+ .|+++|+||
T Consensus 138 ke~gIe~~~~t~v~~~D~--~~K--~l~~~~Ge~~-kys~LilAT 177 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADL--ASK--TLVLGNGETL-KYSKLIIAT 177 (478)
T ss_pred hhcCceEEEcceeEEeec--ccc--EEEeCCCcee-ecceEEEee
Confidence 345678999999999997 433 5777889875 899999993
No 232
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=47.52 E-value=27 Score=32.60 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=29.7
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCce-EEEc---cCCC-ccccccEEEec
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLW-SVSG---LDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~---~~G~-~~~~~d~VIla 63 (259)
|...|++|.++++|.+|+. +++++ .|+. .+|+ ....++.||.|
T Consensus 138 A~~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~~~~~g~~~~i~a~~VVnA 185 (516)
T TIGR03377 138 AQEHGARIFTYTKVTGLIR--EGGRVTGVKVEDHKTGEEERIEAQVVINA 185 (516)
T ss_pred HHHcCCEEEcCcEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCEEEEC
Confidence 4446889999999999997 55553 2332 2342 12389999999
No 233
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=47.49 E-value=67 Score=29.48 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=29.4
Q ss_pred cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
...++||+||...+-.+-+-|+.||..|+..+...+
T Consensus 328 k~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 328 KKRPNLFFAGQITGVEGYVESAASGLLAGINAARLA 363 (436)
T ss_pred cCCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 456799999999977777889999999987776554
No 234
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.31 E-value=38 Score=32.21 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=33.1
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceE----EEccCCCc-cccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~----v~~~~G~~-~~~~d~VIla~ 64 (259)
..|.+++.+..+++|..++.|.+|.. +++.+. +...+|+. ...++.||+||
T Consensus 141 ~~L~~~~~~~~gv~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlAT 196 (577)
T PRK06069 141 HTLYSRALRFDNIHFYDEHFVTSLIV--ENGVFKGVTAIDLKRGEFKVFQAKAGIIAT 196 (577)
T ss_pred HHHHHHHHhcCCCEEEECCEEEEEEE--ECCEEEEEEEEEcCCCeEEEEECCcEEEcC
Confidence 34555555445789999999999976 444432 23345642 23799999994
No 235
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=47.25 E-value=36 Score=31.36 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=43.4
Q ss_pred CCchHHHHHHhcCCCCeeEcceEEEEEEeecCC-Cc-eEEEccCCCccccccEEEecCCCCCC
Q 024990 9 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDK-NL-WSVSGLDGQSLGQFNGVVASDKNVVS 69 (259)
Q Consensus 9 ~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~-~~-~~v~~~~G~~~~~~d~VIla~~~~p~ 69 (259)
..+++..+.+.+.-++++++++.|.+++. +. ++ -.|...||+.+ .+|.||+-+...|.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~--~~~Gev~~V~l~dg~~l-~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEG--NSDGEVSEVKLKDGKTL-EADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeeccc--CCCCcEEEEEeccCCEe-ccCeEEEeeccccc
Confidence 45667777777778899999999999997 43 33 34667789875 89999999443344
No 236
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=46.75 E-value=33 Score=32.61 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+-.. |.++-.|+.+|+.|++.+.+.+
T Consensus 528 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 528 PISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred CcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 5678999994321 3368889999999999887764
No 237
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=46.50 E-value=40 Score=31.50 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=30.7
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceE-EEccC---CC-ccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLD---GQ-SLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~---G~-~~~~~d~VIla~ 64 (259)
.+.|.+..+++|++++.|.+|+. ++++.. |+..+ |+ ....+|.||+++
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~--~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~ 446 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVG--DGDKVTGIRYQDRNSGEEKQLDLDGVFVQI 446 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEc--CCCEEEEEEEEECCCCcEEEEEcCEEEEEe
Confidence 44444435889999999999986 434432 43322 32 123799999994
No 238
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=46.26 E-value=46 Score=32.33 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=31.6
Q ss_pred HhcCCCCeeEcceEEEEEEeecCCCc--eEEEccC-------C--------CccccccEEEecCCCCCC
Q 024990 18 LCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLD-------G--------QSLGQFNGVVASDKNVVS 69 (259)
Q Consensus 18 La~~l~~~i~~~~~V~~I~~~~~~~~--~~v~~~~-------G--------~~~~~~d~VIla~~~~p~ 69 (259)
+.+..+++|++++.|.+|+. ++++ +.+...+ | +. ..+|.||+|+-..|.
T Consensus 363 ll~~~GV~I~~~~~V~~I~~--~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 363 FLKSKPVRVHLNTLIEYVRA--GKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATGRKPN 428 (659)
T ss_pred HhhcCCcEEEcCCEEEEEEe--cCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEECcccC
Confidence 33456799999999999987 4333 5554321 1 13 389999999533333
No 239
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=46.17 E-value=35 Score=30.08 Aligned_cols=50 Identities=26% Similarity=0.302 Sum_probs=35.5
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceE---EEccCCCccccccEEEec
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS---VSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~---v~~~~G~~~~~~d~VIla 63 (259)
+......+.+..++++++++.|..|+. ..+... +...++... .+|.++++
T Consensus 180 ~~~~~~~~l~~~gi~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~-~~d~~~~~ 232 (415)
T COG0446 180 VAEELAELLEKYGVELLLGTKVVGVEG--KGNTLVVERVVGIDGEEI-KADLVIIG 232 (415)
T ss_pred HHHHHHHHHHHCCcEEEeCCceEEEEc--ccCcceeeEEEEeCCcEE-EeeEEEEe
Confidence 455555556666788999999999997 444432 345566553 89999999
No 240
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=45.12 E-value=46 Score=31.44 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=27.1
Q ss_pred cCCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.||+-.. |.++-.|+-+|+.|++.+.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45679999998543 246889999999999987654
No 241
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=45.00 E-value=33 Score=32.41 Aligned_cols=42 Identities=17% Similarity=0.027 Sum_probs=28.7
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceE-EEc---cCCC-ccccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWS-VSG---LDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~---~~G~-~~~~~d~VIla 63 (259)
...+++|+++++|.+|.. +++++. |+. .+|+ ....+|.||.|
T Consensus 160 ~~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~d~~~g~~~~i~A~~VVnA 206 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIR--EGDTVCGVRVRDHLTGETQEIHAPVVVNA 206 (546)
T ss_pred HhCCCEEEeccEEEEEEE--cCCeEEEEEEEEcCCCcEEEEECCEEEEC
Confidence 346889999999999987 555432 332 2232 12389999999
No 242
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=44.24 E-value=38 Score=32.03 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.7
Q ss_pred CCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||-... ..+..|+..|..||..|...|.
T Consensus 272 s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 272 NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred CCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHH
Confidence 45789999997643 2577899999999999877653
No 243
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=42.67 E-value=50 Score=30.97 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=30.5
Q ss_pred CCCCeeEcceEEEEEEeecCCCce-EEEcc-CCC--ccccccEEEecCCCCCCcch
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLW-SVSGL-DGQ--SLGQFNGVVASDKNVVSPRF 72 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~-~G~--~~~~~d~VIla~~~~p~~~a 72 (259)
..+++|++++.|.+|.. ++++. -|++. +|. .+..++.||||.-.+-.|++
T Consensus 206 r~nl~i~~~~~V~rI~~--~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINF--EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred CCCeEEEeCCEEEEEEe--cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 44689999999999997 54432 23322 222 12368999999433333443
No 244
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=42.60 E-value=37 Score=30.44 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=33.6
Q ss_pred CchHHHHHHhcC---CCCeeEcceEEEEEEeecCCCce---EEE-ccCCC-ccccccEEEecCCC
Q 024990 10 GMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLW---SVS-GLDGQ-SLGQFNGVVASDKN 66 (259)
Q Consensus 10 Gm~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~~---~v~-~~~G~-~~~~~d~VIla~~~ 66 (259)
+-..+.+.|.+. .+++|+++++|.+|.. +++++ .+. ..+|+ ....+++||+||-+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEE--ETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEE--eCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 344555555544 4689999999999997 55543 233 23554 22379999999543
No 245
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=42.35 E-value=49 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=28.7
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccC------CC-ccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLD------GQ-SLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~------G~-~~~~~d~VIla~ 64 (259)
...+++++.+ .|.+|.. ++++|.++..+ |+ ....+|.||.|+
T Consensus 103 ~~~G~~v~~~-~v~~v~~--~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad 151 (388)
T TIGR02023 103 QKAGAELIHG-LFLKLER--DRDGVTLTYRTPKKGAGGEKGSVEADVVIGAD 151 (388)
T ss_pred HhCCCEEEee-EEEEEEE--cCCeEEEEEEeccccCCCcceEEEeCEEEECC
Confidence 3457888654 6999987 67788876543 21 123799999993
No 246
>PRK10262 thioredoxin reductase; Provisional
Probab=42.15 E-value=18 Score=31.33 Aligned_cols=41 Identities=10% Similarity=0.280 Sum_probs=28.2
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..+.+++.+ .|..|+. .++.|+++.+++ .+ .||+||+||
T Consensus 73 ~~~~~~~~~~~-~v~~v~~--~~~~~~v~~~~~-~~-~~d~vilAt 113 (321)
T PRK10262 73 ATKFETEIIFD-HINKVDL--QNRPFRLTGDSG-EY-TCDALIIAT 113 (321)
T ss_pred HHHCCCEEEee-EEEEEEe--cCCeEEEEecCC-EE-EECEEEECC
Confidence 33445566665 5777887 667788876544 33 899999994
No 247
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=41.85 E-value=50 Score=31.24 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=25.8
Q ss_pred CCCCEEEeecCC---------C-CCChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFC---------V-SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~---------~-g~~ie~A~~SG~~aA~~l~~ 254 (259)
+-++||.||+-. . |.++-.|+.+|+.|++.+.+
T Consensus 513 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 513 VIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 567899998532 2 44688999999999998865
No 248
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=41.30 E-value=44 Score=30.59 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||..... ...-|+..|+.+|+.|..
T Consensus 293 T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 293 TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 3467899999988654 588999999999999873
No 249
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.21 E-value=59 Score=30.91 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=26.8
Q ss_pred CCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.-++||.||+-.+ |.++-.|+-+|+.|++.+...
T Consensus 369 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 412 (575)
T PRK05945 369 LVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEY 412 (575)
T ss_pred ccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 4679999998643 246899999999999987654
No 250
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=40.82 E-value=69 Score=30.84 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla~ 64 (259)
+.+.+.-++++ +.+.|..|.. +++++. |.+.+|..+ .++.||+||
T Consensus 108 e~L~~~~nV~I-~q~~V~~Li~--e~grV~GV~t~dG~~I-~Ak~VIlAT 153 (618)
T PRK05192 108 EILENQPNLDL-FQGEVEDLIV--ENGRVVGVVTQDGLEF-RAKAVVLTT 153 (618)
T ss_pred HHHHcCCCcEE-EEeEEEEEEe--cCCEEEEEEECCCCEE-ECCEEEEee
Confidence 33343346676 4667888876 445543 667788764 899999993
No 251
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=40.66 E-value=49 Score=29.94 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=39.2
Q ss_pred ecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 6 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
-+.-|.+.|++..|+-. |.++.+|.++..|+. ..++-.+...+|..+.....||+-
T Consensus 226 yP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~--~~~gk~igvk~~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 226 YPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINE--TKNGKVIGVKSGGEVAKCKKVICD 284 (440)
T ss_pred ecccCcchhhHHHHHHhhccCceeecCCceeeeec--cCCccEEEEecCCceeecceEEec
Confidence 45679999999998765 578999999999998 433433333344333356777777
No 252
>PRK06116 glutathione reductase; Validated
Probab=40.42 E-value=45 Score=30.42 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
...++||.+||-..+ .....|++.|+.||+.|..
T Consensus 293 Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 293 TNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred cCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 346799999998754 4678999999999999864
No 253
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=40.01 E-value=57 Score=31.09 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.3
Q ss_pred cCCCCEEEeecCCCCC-----ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-----NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-----~ie~A~~SG~~aA~~l~~ 254 (259)
....++.+.|-+..-+ ++|-.+|+|+.|.-.|+.
T Consensus 484 ~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 484 EGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred CCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 3456899999777644 799999999999988765
No 254
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=39.47 E-value=1.2e+02 Score=29.30 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=27.1
Q ss_pred CCCCEEEeecCCCCCChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~ 254 (259)
..++||+||+..+..+.+-|+.+|..|+-....
T Consensus 356 ~~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~ 388 (617)
T TIGR00136 356 LIQGLFFAGQINGTTGYEEAAAQGLMAGINAAL 388 (617)
T ss_pred CCCCeEEccccCCcchHHHHHHHHHHHHHHHHH
Confidence 468999999987777899999999998765544
No 255
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=38.99 E-value=77 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=27.0
Q ss_pred cCCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.||+-.. |.++-.|+..|+.|++.+...
T Consensus 368 t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 368 TRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred cccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 45789999998532 237888999999999987654
No 256
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=38.53 E-value=72 Score=30.59 Aligned_cols=40 Identities=15% Similarity=-0.015 Sum_probs=27.1
Q ss_pred CCeeEcceEEEEEEeecCCCce---EE-EccCCCc-cccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLW---SV-SGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~---~v-~~~~G~~-~~~~d~VIla~ 64 (259)
+++|++++.|..|.. +++++ .+ ...+|+. ...++.||+||
T Consensus 147 gV~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVILAT 191 (608)
T PRK06854 147 GDNVLNRVFITDLLV--DDNRIAGAVGFSVRENKFYVFKAKAVIVAT 191 (608)
T ss_pred CCEEEeCCEEEEEEE--eCCEEEEEEEEEccCCcEEEEECCEEEECC
Confidence 489999999999875 44433 22 2335542 24799999994
No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=37.66 E-value=79 Score=30.31 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=26.1
Q ss_pred cCCCCEEEeecCCC---------CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV---------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~---------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.||+-.. |.++-.|+..|+.|++.+...
T Consensus 381 t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 381 TNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred ccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34678999998532 237889999999998876543
No 258
>PLN02661 Putative thiazole synthesis
Probab=37.40 E-value=63 Score=28.81 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=32.4
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCc-------eEEEccCCC-------ccccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNL-------WSVSGLDGQ-------SLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~-------~~v~~~~G~-------~~~~~d~VIla~ 64 (259)
..|.++..+..+++|+.++.|..+.. ++++ |.+...++. ....+++||+||
T Consensus 176 stLi~ka~~~~gVkI~~~t~V~DLI~--~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 176 STIMSKLLARPNVKLFNAVAAEDLIV--KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred HHHHHHHHhcCCCEEEeCeEeeeEEe--cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 45666666556789999999999986 4444 222111211 124899999994
No 259
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.17 E-value=47 Score=30.12 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=29.2
Q ss_pred CCeeEcceEEEEEEeecCCCc-eEEEcc---CCC-ccccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNL-WSVSGL---DGQ-SLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~-~~v~~~---~G~-~~~~~d~VIla~ 64 (259)
++.++.++.|.+++. .++| +.+++. .|+ ...+.|+||+||
T Consensus 292 ~v~l~~~~ev~~~~~--~G~g~~~l~~~~~~~~~~~t~~~D~vIlAT 336 (436)
T COG3486 292 DVRLLSLSEVQSVEP--AGDGRYRLTLRHHETGELETVETDAVILAT 336 (436)
T ss_pred Ceeeccccceeeeec--CCCceEEEEEeeccCCCceEEEeeEEEEec
Confidence 467899999999998 5556 877653 232 234799999993
No 260
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=36.58 E-value=55 Score=30.12 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
..++||.+||...+. ....|...|..||+.|..
T Consensus 309 s~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 309 KERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 357899999988654 578899999999998754
No 261
>PRK07395 L-aspartate oxidase; Provisional
Probab=36.21 E-value=40 Score=31.90 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCC--Cc---eEEEccCCCc-cccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDK--NL---WSVSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~--~~---~~v~~~~G~~-~~~~d~VIla~ 64 (259)
.|.+.+.+..+++|++++.|.++.. ++ +. +.+. .+|.. ...++.||+||
T Consensus 139 ~L~~~~~~~~gi~i~~~~~v~~Li~--~~~~g~v~Gv~~~-~~g~~~~i~AkaVILAT 193 (553)
T PRK07395 139 TLTEQVLQRPNIEIISQALALSLWL--EPETGRCQGISLL-YQGQITWLRAGAVILAT 193 (553)
T ss_pred HHHHHHhhcCCcEEEECcChhhhee--cCCCCEEEEEEEE-ECCeEEEEEcCEEEEcC
Confidence 3444444344789999999999976 32 32 3333 35542 23789999994
No 262
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=35.65 E-value=31 Score=27.11 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=27.2
Q ss_pred CCCeeEcceEEEEEEeecCCCc-----eEE---EccCCCccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNL-----WSV---SGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~-----~~v---~~~~G~~~~~~d~VIla 63 (259)
.++++++++.|.+|+. ..+. +.+ ...++..+ .||+||+|
T Consensus 71 ~~v~~~~~~~v~~i~~--~~~~~~~~~~~~~~~~~~~~~~~-~~d~lviA 117 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDP--ESKRVVCPAVTIQVVETGDGREI-KYDYLVIA 117 (201)
T ss_dssp HTHEEEHHHTEEEEEE--STTEEEETCEEEEEEETTTEEEE-EEEEEEEE
T ss_pred ceEEEeeccccccccc--cccccccCcccceeeccCCceEe-cCCeeeec
Confidence 4678899999999997 4442 233 23344443 89999999
No 263
>PLN02507 glutathione reductase
Probab=35.42 E-value=64 Score=30.05 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=27.9
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||...+. ...-|...|+.+|+.|..
T Consensus 328 Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 328 TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcC
Confidence 4567899999998654 577899999999998864
No 264
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=35.41 E-value=82 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.086 Sum_probs=26.5
Q ss_pred CCCEEEeecCCC------CCChhHHHHHHHHHHHHHHh
Q 024990 223 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 223 ~~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~ 254 (259)
.+++++.||... |-+++-|++++..+|+.|..
T Consensus 278 ~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~ 315 (390)
T TIGR02360 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLE 315 (390)
T ss_pred cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHH
Confidence 468999999643 56899999999999988764
No 265
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=35.31 E-value=44 Score=31.59 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=30.0
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..++++ .++.|.+|+. +++.+.|.+.+|. + .+|+||+||
T Consensus 70 ~~~~gv~~-~~~~V~~i~~--~~~~~~V~~~~g~-~-~a~~lVlAT 110 (555)
T TIGR03143 70 AQDFGVKF-LQAEVLDVDF--DGDIKTIKTARGD-Y-KTLAVLIAT 110 (555)
T ss_pred HHHcCCEE-eccEEEEEEe--cCCEEEEEecCCE-E-EEeEEEECC
Confidence 33457776 4778999987 5566788776664 3 799999993
No 266
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=35.31 E-value=66 Score=29.15 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=28.6
Q ss_pred CCCCEEEeecCCCC------CChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFCVS------PNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~~g------~~ie~A~~SG~~aA~~l~~~l 256 (259)
..++||.+||-... ....-|++.|..+|+.|...+
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 46789999997642 356789999999999998876
No 267
>PRK07804 L-aspartate oxidase; Provisional
Probab=34.78 E-value=79 Score=29.80 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=26.5
Q ss_pred cCCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.|||-.. +.++..|+..|+.|++.+.+.
T Consensus 368 t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 368 TSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred ccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999653 125777888999999887654
No 268
>PRK08071 L-aspartate oxidase; Provisional
Probab=34.52 E-value=65 Score=30.10 Aligned_cols=49 Identities=14% Similarity=0.004 Sum_probs=31.4
Q ss_pred HHHHHhcC--CCCeeEcceEEEEEEeecCCCce---EEEccCCCc-cccccEEEecC
Q 024990 14 ICKALCHQ--PGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~--l~~~i~~~~~V~~I~~~~~~~~~---~v~~~~G~~-~~~~d~VIla~ 64 (259)
+.+.|.+. .+++|++++.|..|.. +++.+ .+...+|+. ...++.||+||
T Consensus 132 i~~~L~~~~~~gV~i~~~~~v~~Li~--~~g~v~Gv~~~~~~g~~~~i~Ak~VVlAT 186 (510)
T PRK08071 132 LLEHLLQELVPHVTVVEQEMVIDLII--ENGRCIGVLTKDSEGKLKRYYADYVVLAS 186 (510)
T ss_pred HHHHHHHHHhcCCEEEECeEhhheee--cCCEEEEEEEEECCCcEEEEEcCeEEEec
Confidence 45545443 3689999999999976 44443 233334542 23789999994
No 269
>PRK12839 hypothetical protein; Provisional
Probab=34.44 E-value=81 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.055 Sum_probs=26.9
Q ss_pred CCCCEEEeecCC----------CCCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFC----------VSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~----------~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+-++||.||+-. .|.++-.|+.+|+.|++.+.++
T Consensus 524 pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 524 PIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 567899999621 2447999999999999988764
No 270
>PRK08275 putative oxidoreductase; Provisional
Probab=34.09 E-value=1e+02 Score=29.07 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=27.0
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.|||-... .++..|+-.|+.|++.+...
T Consensus 367 t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~ 403 (554)
T PRK08275 367 TTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEY 403 (554)
T ss_pred cCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 457799999996532 36888999999998877654
No 271
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=34.03 E-value=76 Score=29.18 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||.... ....-|...|..||+.++.
T Consensus 302 Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 302 TSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcC
Confidence 346789999998865 4688999999999998874
No 272
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=33.36 E-value=42 Score=32.84 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=41.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcc
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR 71 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~ 71 (259)
+.+.++..+..+.++++++-+..|.. .+.-..+..+||..+ .||-||.|+-.-|-..
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i-~ad~VV~a~GIrPn~e 246 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEI-PADLVVMAVGIRPNDE 246 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcc-cceeEEEecccccccH
Confidence 45667777778889999998888875 433346788899875 8999999954334433
No 273
>PRK08401 L-aspartate oxidase; Provisional
Probab=33.35 E-value=77 Score=29.18 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=26.2
Q ss_pred cCCCCEEEeecCCC-C---------CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCV-S---------PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~-g---------~~ie~A~~SG~~aA~~l~~ 254 (259)
+.-++||.||+-.. | .++-.|+..|+.|++.+.+
T Consensus 321 t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 321 TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 45789999998643 2 2577799999999998854
No 274
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=33.00 E-value=85 Score=29.61 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCCEEEeecCCC-------------CCChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFCV-------------SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~~-------------g~~ie~A~~SG~~aA~~l~~ 254 (259)
+-++||.||+-.. |.++-.|+.+|+.|++.+.+
T Consensus 503 pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 503 PLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred EeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 4578999986532 45789999999999998754
No 275
>PTZ00367 squalene epoxidase; Provisional
Probab=32.58 E-value=4.5e+02 Score=25.09 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=25.6
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHH
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLT 253 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~ 253 (259)
.+++.+.||.. .|.+++-|++.+..+++.|.
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~ 372 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLT 372 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 45899999964 46789999999999988875
No 276
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=32.47 E-value=1.1e+02 Score=25.77 Aligned_cols=45 Identities=18% Similarity=0.020 Sum_probs=28.4
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEE---Ecc------CC----CccccccEEEecCCCCCCc
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSV---SGL------DG----QSLGQFNGVVASDKNVVSP 70 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v---~~~------~G----~~~~~~d~VIla~~~~p~~ 70 (259)
..+++|+.++.|..|.. ++++++| ... +| .....++.||.| +..+
T Consensus 112 e~GV~I~~~t~V~dli~--~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdA---TG~~ 169 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLIT--RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDA---TGHD 169 (254)
T ss_pred HcCCEEECCcEEEEEEE--eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEe---ecCC
Confidence 45789999999999987 4442221 111 12 112379999999 5543
No 277
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.97 E-value=87 Score=29.67 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCCCEEEeecC---------CC-CCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDF---------CV-SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~---------~~-g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+-++||.||+- .. |.++-.|+.+|+.|++.+.+.++
T Consensus 506 pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 506 VIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred CccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 56789999952 22 55899999999999999887654
No 278
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.87 E-value=60 Score=30.74 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=29.9
Q ss_pred cCCCCeeEcceEEEEEEeecCCCce---EEEccCCCc-cccc-cEEEecCCCCCC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQS-LGQF-NGVVASDKNVVS 69 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~---~v~~~~G~~-~~~~-d~VIla~~~~p~ 69 (259)
+..+++|+++++|.+|.. +++++ .+. .+|+. ...+ +.||||+-+...
T Consensus 219 ~~~gv~i~~~~~v~~Li~--~~g~v~Gv~~~-~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 219 LAAGVPLWTNTPLTELIV--EDGRVVGVVVV-RDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HhCCCEEEeCCEEEEEEE--eCCEEEEEEEE-ECCeEEEEEecceEEEecCCccC
Confidence 345789999999999986 44433 222 24532 2357 479999544443
No 279
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=31.04 E-value=95 Score=32.43 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=27.6
Q ss_pred CCCCEEEeecC---------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDF---------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~---------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+- ..|.++-.|+.+|+.|++.+.+.+
T Consensus 859 pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~ 902 (1167)
T PTZ00306 859 PILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATIL 902 (1167)
T ss_pred eeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 46789999973 345578889999999999887754
No 280
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=30.89 E-value=1e+02 Score=29.92 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=29.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCc---eEEEc-cCCCc-cccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL---WSVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~---~~v~~-~~G~~-~~~~d~VIla~ 64 (259)
..+++|+.++.|.+|.. ++++ +.+.+ .+|+. ...+++||+||
T Consensus 170 ~~gv~i~~~~~~~~Li~--~~g~v~Gv~~~~~~~G~~~~i~AkaVVLAT 216 (657)
T PRK08626 170 KLGVPVHDRKEAIALIH--DGKRCYGAVVRCLITGELRAYVAKATLIAT 216 (657)
T ss_pred hCCCEEEeeEEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCeEEECC
Confidence 46789999999999986 4443 44443 46653 23689999994
No 281
>PRK02106 choline dehydrogenase; Validated
Probab=30.40 E-value=85 Score=29.64 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCCeeEcceEEEEEEeecCCCc---eEEEccCCC-ccccccEEEecCCCCCCcc
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVASDKNVVSPR 71 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~-~~~~~d~VIla~~~~p~~~ 71 (259)
.-+++|++++.|.+|.. ++++ +++...++. ....++.||||.-.+-.|+
T Consensus 213 ~~nl~i~~~a~V~rI~~--~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~ 265 (560)
T PRK02106 213 RPNLTIVTHALTDRILF--EGKRAVGVEYERGGGRETARARREVILSAGAINSPQ 265 (560)
T ss_pred CCCcEEEcCCEEEEEEE--eCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHH
Confidence 34589999999999998 5443 233333332 1236899999944334444
No 282
>PRK06444 prephenate dehydrogenase; Provisional
Probab=30.00 E-value=54 Score=26.51 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=32.6
Q ss_pred ceecC-CCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCC
Q 024990 4 KYVGV-PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGR 78 (259)
Q Consensus 4 ~~~~~-~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~ 78 (259)
..+|. ++|+.+...+.+..|..|. + ..+|.||+| +|...+.+++..
T Consensus 4 ~iiG~~G~mG~~~~~~~~~~g~~v~------------------~--------~~~DlVila---vPv~~~~~~i~~ 50 (197)
T PRK06444 4 IIIGKNGRLGRVLCSILDDNGLGVY------------------I--------KKADHAFLS---VPIDAALNYIES 50 (197)
T ss_pred EEEecCCcHHHHHHHHHHhCCCEEE------------------E--------CCCCEEEEe---CCHHHHHHHHHH
Confidence 44554 7888888777766555331 1 268999999 999988877764
No 283
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.87 E-value=86 Score=21.73 Aligned_cols=20 Identities=5% Similarity=0.184 Sum_probs=16.5
Q ss_pred cCCCchHHHHHHhcCCCCee
Q 024990 7 GVPGMNSICKALCHQPGVES 26 (259)
Q Consensus 7 ~~~Gm~~l~~~La~~l~~~i 26 (259)
+..|+..|...+++.++.++
T Consensus 19 ~s~~~~~L~~~I~~Rl~~d~ 38 (86)
T cd06409 19 PSESLEELRTLISQRLGDDD 38 (86)
T ss_pred CCCCHHHHHHHHHHHhCCcc
Confidence 36899999999999888754
No 284
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=29.70 E-value=79 Score=28.87 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=27.6
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
...++||.+||-... .....|+..|..||+.|..
T Consensus 300 t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 300 TAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 346799999997754 3577899999999999874
No 285
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.34 E-value=1.2e+02 Score=28.18 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=27.8
Q ss_pred cceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCC
Q 024990 28 FGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 69 (259)
Q Consensus 28 ~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~ 69 (259)
..+.+.++....+..+|.++..+|.. ..||.+||||-..++
T Consensus 125 ~~~~a~~~~~~~n~~~~~~~~~~g~~-~~ad~~Vlatgh~~~ 165 (474)
T COG4529 125 IREEATSVRQDTNAGGYLVTTADGPS-EIADIIVLATGHSAP 165 (474)
T ss_pred EeeeeecceeccCCceEEEecCCCCe-eeeeEEEEeccCCCC
Confidence 34456666662235678888889976 489999999644433
No 286
>PRK07121 hypothetical protein; Validated
Probab=28.90 E-value=69 Score=29.64 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=31.7
Q ss_pred hHHHHHHhc---CCCCeeEcceEEEEEEeecCC-CceE-EEc-cCCCc-cccc-cEEEecC
Q 024990 12 NSICKALCH---QPGVESKFGVGVGRFEWLEDK-NLWS-VSG-LDGQS-LGQF-NGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~-~~~~-v~~-~~G~~-~~~~-d~VIla~ 64 (259)
..+.+.|.+ ..+++|+++++|.+|.. ++ +++. |.. .+|+. ...+ +.||+|+
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAt 235 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIV--DDDGRVVGVEARRYGETVAIRARKGVVLAA 235 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--CCCCCEEEEEEEeCCcEEEEEeCCEEEECC
Confidence 345555533 45789999999999986 43 3332 222 23332 2367 9999994
No 287
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=28.71 E-value=89 Score=28.51 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=28.0
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ...-|+..|+.+|+.|..
T Consensus 291 Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 291 TSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred cCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 3467999999998654 567899999999998874
No 288
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=28.43 E-value=19 Score=32.75 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCc---eEEEccCCCccccccEEEec
Q 024990 9 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 9 ~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~~~~~~d~VIla 63 (259)
..+..+.+.+++..+++|++++.|..+.. ++++ +.+.+.+|.....++.||=|
T Consensus 90 ~~~~~~l~~~l~e~gv~v~~~t~v~~v~~--~~~~i~~V~~~~~~g~~~i~A~~~IDa 145 (428)
T PF12831_consen 90 EVFKAVLDEMLAEAGVEVLLGTRVVDVIR--DGGRITGVIVETKSGRKEIRAKVFIDA 145 (428)
T ss_dssp ----------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 44566677777777899999999999997 5533 33333345433489988888
No 289
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=28.13 E-value=73 Score=29.72 Aligned_cols=43 Identities=9% Similarity=-0.051 Sum_probs=30.1
Q ss_pred CCCCeeEcceEEEEEEeecCCCc---eEEEccCCC-ccccccEEEecCC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVASDK 65 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~-~~~~~d~VIla~~ 65 (259)
..+++|+++++|.+|.. ++++ +.+...+|+ ....+|.||+|+-
T Consensus 202 ~~gv~i~~~t~v~~l~~--~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 202 ERKIPLFVNADVTKITE--KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HcCCeEEeCCeeEEEEe--cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 45789999999999986 4443 445444543 2247999999953
No 290
>PRK14727 putative mercuric reductase; Provisional
Probab=28.03 E-value=92 Score=28.76 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=27.8
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-... ..+.-|+..|+.||+.|..
T Consensus 311 Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 311 TSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred cCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcC
Confidence 446799999998764 3577899999999999864
No 291
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=28.01 E-value=1.1e+02 Score=27.86 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=30.1
Q ss_pred cCCCCEEEeecCC--CC-----CChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFC--VS-----PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~--~g-----~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
...+.||.+||-. .+ ++.+.|++.|..+|+.|.+.++
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 4577899999943 22 5899999999999999998764
No 292
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=27.89 E-value=80 Score=28.81 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=27.9
Q ss_pred CCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
..++||.+||...+. ....|+..|+.+|+.|...
T Consensus 298 ~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 298 NVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 457999999987643 5788999999999998753
No 293
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=27.88 E-value=82 Score=27.93 Aligned_cols=39 Identities=15% Similarity=-0.002 Sum_probs=28.0
Q ss_pred CeeEcceEEEEEEeecCCCce---EEEccCCC-ccccccEEEecC
Q 024990 24 VESKFGVGVGRFEWLEDKNLW---SVSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~~~---~v~~~~G~-~~~~~d~VIla~ 64 (259)
++|.+|++|..|.+ +++++ ...+.+|+ ....+|+||+|+
T Consensus 160 ~ki~~nskvv~il~--n~gkVsgVeymd~sgek~~~~~~~VVlat 202 (477)
T KOG2404|consen 160 VKILLNSKVVDILR--NNGKVSGVEYMDASGEKSKIIGDAVVLAT 202 (477)
T ss_pred Hhhhhcceeeeeec--CCCeEEEEEEEcCCCCccceecCceEEec
Confidence 57899999999997 65553 33355664 223799999993
No 294
>PLN02852 ferredoxin-NADP+ reductase
Probab=27.41 E-value=60 Score=30.32 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCCEEEeecCCCCCC--hhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFCVSPN--VEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~~g~~--ie~A~~SG~~aA~~l~~~l 256 (259)
.++||.|||...|+. |-.++..|..+|+.|++.+
T Consensus 386 ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 386 EPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHH
Confidence 478999999998764 7888888888888888765
No 295
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.39 E-value=1.3e+02 Score=29.06 Aligned_cols=42 Identities=10% Similarity=-0.061 Sum_probs=28.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCce---EEEc-cCCCc-cccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLW---SVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~---~v~~-~~G~~-~~~~d~VIla~ 64 (259)
..+++|++++.|.+|.. +++++ .+.. .+|+. ...+++||+||
T Consensus 182 ~~gV~i~~~t~v~~Li~--d~g~V~GV~~~~~~~g~~~~i~AkaVVLAT 228 (640)
T PRK07573 182 AGTVKMYTRTEMLDLVV--VDGRARGIVARNLVTGEIERHTADAVVLAT 228 (640)
T ss_pred hcCCEEEeceEEEEEEE--eCCEEEEEEEEECCCCcEEEEECCEEEECC
Confidence 46789999999999986 44443 3332 24542 24799999994
No 296
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=27.33 E-value=51 Score=30.79 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=29.5
Q ss_pred cCCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.|||-...+ .+.-|+.+|..||..+.+.|-
T Consensus 474 Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~ 512 (517)
T PRK15317 474 TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLI 512 (517)
T ss_pred CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHh
Confidence 3467899999988654 488899999999988777653
No 297
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=26.69 E-value=1.4e+02 Score=28.29 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=26.8
Q ss_pred CCCCEEEeecCCCC----------CChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCVS----------PNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~g----------~~ie~A~~SG~~aA~~l~~~ 255 (259)
.-++||.||+-.++ .++-+|+-+|+.|++.+.+.
T Consensus 352 ~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~ 395 (565)
T TIGR01816 352 IVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEY 395 (565)
T ss_pred ccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 46799999986532 26889999999999987654
No 298
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=26.33 E-value=94 Score=28.35 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-.... ....|+..|+.||+.|..
T Consensus 296 ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 296 TSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcC
Confidence 3467899999998653 578899999999999865
No 299
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.99 E-value=1.8e+02 Score=27.90 Aligned_cols=51 Identities=12% Similarity=-0.079 Sum_probs=0.0
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCc-----eEEEccCCC-ccccccEEEecCCCC
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-----WSVSGLDGQ-SLGQFNGVVASDKNV 67 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~-----~~v~~~~G~-~~~~~d~VIla~~~~ 67 (259)
+..|.+.+.+ .+++|.+++.|.+|.. ++++ +.+...+|. ....+++||+| +
T Consensus 152 ~~~L~~~~~~-~gi~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA---T 208 (598)
T PRK09078 152 LHTLYQQSLK-HNAEFFIEYFALDLIM--DDGGVCRGVVAWNLDDGTLHRFRAHMVVLA---T 208 (598)
T ss_pred HHHHHHHHhh-cCCEEEEeEEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEEC---C
No 300
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=25.61 E-value=1e+02 Score=28.53 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=28.2
Q ss_pred CCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 223 KRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 223 ~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
.++||.|||...+. -..-|...|+.||+.|..
T Consensus 302 vp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 302 VPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred CCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 58899999998776 678899999999999874
No 301
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.46 E-value=1e+02 Score=28.24 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=28.0
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+ ....-|...|+.||+.|..
T Consensus 301 Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 301 TNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 346799999998864 3677899999999998864
No 302
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.29 E-value=1e+02 Score=28.13 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ....|+..|+.+|+.|..
T Consensus 299 t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 299 TNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred cCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 4467999999987643 678899999999998875
No 303
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=25.20 E-value=1.8e+02 Score=27.19 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=22.9
Q ss_pred cCCCCEEEeecCCCCC-----ChhHHHHHHHHHH
Q 024990 221 DVKRRLAICGDFCVSP-----NVEGAILSGLDAA 249 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-----~ie~A~~SG~~aA 249 (259)
....++.+.|-+..-+ ++|-.+|+|+.|+
T Consensus 466 ~g~~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 466 EGSTNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred CCcceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence 3456899999877654 7999999999874
No 304
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=25.14 E-value=74 Score=28.57 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCCEEEee---cCCCCCChhHHHHHHHHHHHHHH
Q 024990 223 KRRLAICG---DFCVSPNVEGAILSGLDAASKLT 253 (259)
Q Consensus 223 ~~~l~laG---D~~~g~~ie~A~~SG~~aA~~l~ 253 (259)
..+|+++| +|-+ -+|+.|+.+|+.+|++++
T Consensus 344 ~~~v~~~GRlg~y~Y-~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 344 EDNLILLGRLAEYQY-YDMDQAILAALYKAEQLL 376 (377)
T ss_pred CCCEEEeeeeeEeEe-ecHHHHHHHHHHHHHHhh
Confidence 45899999 4433 589999999999999875
No 305
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=25.11 E-value=1e+02 Score=28.35 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=27.7
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.|||...+. ...-|...|..||+.|..
T Consensus 312 Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 312 TNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcC
Confidence 3467999999987643 678899999999999864
No 306
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=25.04 E-value=43 Score=21.11 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=19.1
Q ss_pred cCCCCC--ChhHHHHHHHHHHHHHHhhhcc
Q 024990 231 DFCVSP--NVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 231 D~~~g~--~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
|++.|| +++.|.+....-.+.+++.|..
T Consensus 25 DfCCgG~~~L~eA~~~~~ld~~~vl~~L~~ 54 (56)
T PF04405_consen 25 DFCCGGNRSLEEACEEKGLDPEEVLEELNA 54 (56)
T ss_pred cccCCCCchHHHHHHHcCCCHHHHHHHHHH
Confidence 666665 6777777766666777777654
No 307
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.99 E-value=1.1e+02 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=29.4
Q ss_pred hcCCCCeeEcceEEEEEEeecC-CCce---EEEccCCCc-ccccc-EEEecCCC
Q 024990 19 CHQPGVESKFGVGVGRFEWLED-KNLW---SVSGLDGQS-LGQFN-GVVASDKN 66 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~-~~~~---~v~~~~G~~-~~~~d-~VIla~~~ 66 (259)
++..+++|+++++|.+|.. + ++++ .+.. +|+. ...++ .||||+-+
T Consensus 223 ~~~~gv~i~~~~~~~~Li~--d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 223 LKDAGVPLWLDSPMTELIT--DPDGAVVGAVVER-EGRTLRIGARRGVILATGG 273 (584)
T ss_pred HHhCCceEEeCCEEEEEEE--CCCCcEEEEEEEe-CCcEEEEEeceeEEEecCc
Confidence 3456889999999999987 4 3333 2332 4432 23676 69999543
No 308
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=24.98 E-value=96 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=27.8
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
...++||.+||-.... ....|...|+.||+.|..
T Consensus 302 t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 302 TNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcC
Confidence 3467899999987543 678899999999998864
No 309
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=24.92 E-value=1.1e+02 Score=27.86 Aligned_cols=34 Identities=9% Similarity=-0.134 Sum_probs=26.7
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
...++||.+||-..+. ...-|+..|+.+++.|..
T Consensus 282 Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 282 TTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 3467899999998753 567788889999988864
No 310
>PLN02815 L-aspartate oxidase
Probab=24.78 E-value=1.4e+02 Score=28.63 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=26.7
Q ss_pred cCCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
..-++||.||+-.+ |.++-.|+-.|+.|++.+...
T Consensus 388 t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 388 TNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred eecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 35678999997542 347889999999999987543
No 311
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.74 E-value=1.5e+02 Score=28.05 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~l 256 (259)
-++||.||+-.+ |.++-+|+-.|+.|++.+...+
T Consensus 360 IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 403 (566)
T PRK06452 360 IVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFL 403 (566)
T ss_pred cCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 789999998643 1368999999999999876543
No 312
>PRK06370 mercuric reductase; Validated
Probab=24.43 E-value=1.2e+02 Score=27.78 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=27.7
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-.... ....|...|+.||+.|+.
T Consensus 299 t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 299 TTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 3467999999987654 467899999999999874
No 313
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.36 E-value=1.4e+02 Score=28.87 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCCCEEEeecCCC---------CCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCV---------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~---------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.-++||.||+-.. |.++-.|+..|+.|++.+.+.
T Consensus 404 ~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~ 446 (626)
T PRK07803 404 TVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADY 446 (626)
T ss_pred ecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHH
Confidence 4678999998432 347899999999998877554
No 314
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=24.35 E-value=1.3e+02 Score=27.58 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=27.7
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ...-|+..|+.||..+..
T Consensus 295 ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 295 TNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 4467899999988654 567899999999998864
No 315
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=24.31 E-value=1.5e+02 Score=26.98 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCC-ceEEEccC---CC-ccccccEEEec
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLD---GQ-SLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~---G~-~~~~~d~VIla 63 (259)
...+++.+.-+.+++++++|.++++ +++ .+.|+.++ |+ ...++|.+.|+
T Consensus 256 k~~qr~L~kQgikF~l~tkv~~a~~--~~dg~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 256 KAFQRVLQKQGIKFKLGTKVTSATR--NGDGPVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred HHHHHHHHhcCceeEeccEEEEeec--cCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence 3445555556788899999999998 555 55555433 32 22379999999
No 316
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=24.29 E-value=1.2e+02 Score=28.19 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=28.0
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ...-|+..|..||+.|..
T Consensus 316 Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 316 TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 3467999999998654 577799999999999864
No 317
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=24.21 E-value=1.2e+02 Score=29.31 Aligned_cols=42 Identities=19% Similarity=0.001 Sum_probs=28.0
Q ss_pred cCCCCeeEcceEEEEEEeecC--CCce---EEEc-cCCCc-cccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLED--KNLW---SVSG-LDGQS-LGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~--~~~~---~v~~-~~G~~-~~~~d~VIla 63 (259)
...+++|+.++.|.+|.. + ++++ ++.+ .+|+. ...+|.||+|
T Consensus 243 ~~~Ga~i~~~~~V~~l~~--~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnA 291 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIK--DESTGRIVGARVRDNLTGKEFDVYAKVVVNA 291 (627)
T ss_pred HhCCcEEEeccEEEEEEE--ecCCCcEEEEEEEECCCCcEEEEEeCEEEEC
Confidence 345789999999999987 4 3433 2322 23432 2489999999
No 318
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=24.10 E-value=21 Score=31.25 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhcc
Q 024990 234 VSPNVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 234 ~g~~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
.|.+++-|++-|.-||.+++...+|
T Consensus 310 qg~~l~~cir~g~~aa~~vi~~~G~ 334 (343)
T KOG2854|consen 310 QGKSLEECIRAGSYAASHVIRRVGC 334 (343)
T ss_pred cCCCHHHHHHHHHHHhhheeeccCC
Confidence 3569999999999999999988776
No 319
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=24.02 E-value=1e+02 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=33.9
Q ss_pred HHHHHH---hcCCCCeeEcceEEEEEEeecCCCc---eEEEccCCCcccccc-EEEecCCCCC
Q 024990 13 SICKAL---CHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQSLGQFN-GVVASDKNVV 68 (259)
Q Consensus 13 ~l~~~L---a~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~~~~~~d-~VIla~~~~p 68 (259)
.|.+.| ++..+++|++++.|.+|.. ++++ +.+...++.....++ .||+|+-+.+
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~--~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLT--EGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEe--eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 354445 3346789999999999987 5553 334433443223575 7999954444
No 320
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=23.96 E-value=90 Score=28.80 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=30.9
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..-.+||.+||..+- .+|..|-.+|..+|+.|+.+..
T Consensus 447 t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 447 TSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eeecceEEccccccccchhHHHhhhhHHHHHHHHHHhc
Confidence 345689999998764 4799999999999999988753
No 321
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=23.93 E-value=87 Score=30.52 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=36.3
Q ss_pred HHHHHH---hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 13 SICKAL---CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~L---a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+..+| |+.+++.|.-+++|++|.- .+++.|-|++..|.. ++.+||=|
T Consensus 188 ~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G~i--et~~~VNa 238 (856)
T KOG2844|consen 188 GLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHGSI--ETECVVNA 238 (856)
T ss_pred HHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCcce--ecceEEec
Confidence 344444 5567899999999999985 255667898888863 78888866
No 322
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.92 E-value=2e+02 Score=27.35 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=26.4
Q ss_pred CCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.-++||.||+-.. |.++-.|+-+|+.|++.+...
T Consensus 361 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 404 (570)
T PRK05675 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKA 404 (570)
T ss_pred ccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 4679999998532 236899999999999887654
No 323
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=23.80 E-value=1.1e+02 Score=27.87 Aligned_cols=35 Identities=17% Similarity=-0.033 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+. ...-|...|+.||+.|...
T Consensus 294 Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 294 TSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 3467899999988754 4678999999999998753
No 324
>PRK06847 hypothetical protein; Provisional
Probab=23.65 E-value=1.1e+02 Score=26.83 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.3
Q ss_pred CCCEEEeecCCC------CCChhHHHHHHHHHHHHHHh
Q 024990 223 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 223 ~~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~ 254 (259)
.++|+++||... |.+++-|++.+..+|+.|..
T Consensus 281 ~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~ 318 (375)
T PRK06847 281 RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR 318 (375)
T ss_pred CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh
Confidence 468999999643 66899999999999988753
No 325
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=23.40 E-value=1.1e+02 Score=27.96 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=27.6
Q ss_pred cCCCCeeEcceEEEEEEeecCCCc---eEEEc-------c--------CCC-ccccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNL---WSVSG-------L--------DGQ-SLGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~-------~--------~G~-~~~~~d~VIla 63 (259)
+..+++|++++.|.+|.. ++++ +.+.. . +|+ ..+.+|.||+|
T Consensus 322 ~~~GV~i~~~~~v~~i~~--~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a 382 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILG--DEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKA 382 (457)
T ss_pred HHCCCEEEecCCcEEEEe--cCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEEC
Confidence 456889999999999986 4433 44321 0 122 12479999999
No 326
>PRK14694 putative mercuric reductase; Provisional
Probab=23.40 E-value=1.2e+02 Score=27.80 Aligned_cols=34 Identities=24% Similarity=0.121 Sum_probs=27.7
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-... ..+.-|...|+.||..|..
T Consensus 300 Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 300 TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcC
Confidence 456789999998754 3678899999999998864
No 327
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=23.25 E-value=2.7e+02 Score=19.53 Aligned_cols=34 Identities=21% Similarity=0.072 Sum_probs=24.0
Q ss_pred CCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 223 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 223 ~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..+.++.++.++..++ .|=.-|.+||++|++.|.
T Consensus 68 ~~g~~~g~~alG~~g~-~aE~Vg~~Aa~~L~~~i~ 101 (103)
T PF05189_consen 68 ENGCVLGFSALGERGV-PAEKVGEEAAEELLEYIR 101 (103)
T ss_dssp TTS-EEEEEEEE-TTS--HHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHh
Confidence 3358888888854443 477889999999998875
No 328
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.13 E-value=95 Score=29.22 Aligned_cols=41 Identities=10% Similarity=-0.076 Sum_probs=28.4
Q ss_pred CCCeeEcceEEEEEEeecCCCc-eE---EEc-cCCCc-cccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNL-WS---VSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~-~~---v~~-~~G~~-~~~~d~VIla~ 64 (259)
.+++|.+++.|.++.. ++++ +. +.. .+|+. ...++.||+||
T Consensus 147 ~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlAT 193 (543)
T PRK06263 147 ERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILAT 193 (543)
T ss_pred CCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECC
Confidence 5789999999999986 4443 32 222 45642 23789999994
No 329
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.10 E-value=83 Score=27.33 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=28.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..++++.. ..|.+++. .++.+.|.+++|+ + +++.||+|
T Consensus 73 ~~~~~~~~-~~v~~v~~--~~~~F~v~t~~~~-~-~ak~vIiA 110 (305)
T COG0492 73 KFGVEIVE-DEVEKVEL--EGGPFKVKTDKGT-Y-EAKAVIIA 110 (305)
T ss_pred hcCeEEEE-EEEEEEee--cCceEEEEECCCe-E-EEeEEEEC
Confidence 34666555 78888886 4337889998887 4 89999999
No 330
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=23.10 E-value=1.1e+02 Score=29.16 Aligned_cols=49 Identities=10% Similarity=-0.088 Sum_probs=31.6
Q ss_pred HHHHHhc---CCCCeeEcceEEEEEEeecCCCceE---E-EccCCCc-cccccEEEecC
Q 024990 14 ICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS---V-SGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~---v-~~~~G~~-~~~~d~VIla~ 64 (259)
|.+.|.+ ..+++|..++.|.+|-. +++.+. + ...+|+. ...+++|||||
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~g~v~Ga~~~~~~~g~~~~i~AkaVILAT 177 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLM--EDGECRGVIAYCLETGEIHRFRAKAVVLAT 177 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEe--eCCEEEEEEEEEcCCCcEEEEEeCeEEECC
Confidence 4444433 35789999999999886 444332 2 2235652 23789999994
No 331
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=23.03 E-value=1.1e+02 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=26.1
Q ss_pred CCCCeeEcceEEEEEEeecCCC-ce---EEE----ccCC---C-ccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKN-LW---SVS----GLDG---Q-SLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~-~~---~v~----~~~G---~-~~~~~d~VIla 63 (259)
..+++|++++.|..+.. +++ .+ .+. ..+| + ....++.||.|
T Consensus 116 ~~Gv~I~~~t~V~dl~~--~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~A 168 (257)
T PRK04176 116 DAGAKIFNGVSVEDVIL--REDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDA 168 (257)
T ss_pred HcCCEEEcCceeceeeE--eCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEE
Confidence 35789999999999986 333 22 111 1122 1 12379999999
No 332
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=22.91 E-value=2e+02 Score=27.66 Aligned_cols=51 Identities=10% Similarity=-0.080 Sum_probs=0.0
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCc-----eEEEccCCC-ccccccEEEecCCCC
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-----WSVSGLDGQ-SLGQFNGVVASDKNV 67 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~-----~~v~~~~G~-~~~~~d~VIla~~~~ 67 (259)
+..|.++..+ .+++|..++.|.++.. ++++ +.+...+|+ ....+++||+| +
T Consensus 169 ~~~L~~~a~~-~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA---T 225 (617)
T PTZ00139 169 LHTLYGQSLK-YDCNFFIEYFALDLIM--DEDGECRGVIAMSMEDGSIHRFRAHYTVIA---T 225 (617)
T ss_pred HHHHHHHHHh-CCCEEEeceEEEEEEE--CCCCEEEEEEEEECCCCeEEEEECCcEEEe---C
No 333
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.84 E-value=1e+02 Score=29.43 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=26.5
Q ss_pred cCCCCEEEeecCC---------CCCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFC---------VSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~---------~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+.-++||.||+-. .|.++-.|+-.|+.|++.+.+.
T Consensus 366 t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~ 409 (589)
T PRK08641 366 TNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEY 409 (589)
T ss_pred eECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 3577999999854 2347889999999998877654
No 334
>PRK13748 putative mercuric reductase; Provisional
Probab=22.59 E-value=1.2e+02 Score=28.56 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=27.6
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-... ..+.-|+..|+.||+.|..
T Consensus 393 Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 393 TSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 346789999998765 3577899999999998863
No 335
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.49 E-value=1.3e+02 Score=27.56 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=28.2
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.|||-..+. ...-|.+.|+.+|+.|..
T Consensus 303 Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 303 TSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 4567899999988654 578899999999998865
No 336
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.14 E-value=2e+02 Score=27.37 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCC----Cc----eEEEccCCCc-cccccEEEecCCCC
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDK----NL----WSVSGLDGQS-LGQFNGVVASDKNV 67 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~----~~----~~v~~~~G~~-~~~~d~VIla~~~~ 67 (259)
+..|.+.+. ..+++|..++.|..|.. ++ ++ +.+...+|+. ...+++||+| +
T Consensus 143 ~~~L~~~~~-~~gv~i~~~~~v~~Li~--~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA---T 202 (583)
T PRK08205 143 LQTLYQNCV-KHGVEFFNEFYVLDLLL--TETPSGPVAAGVVAYELATGEIHVFHAKAVVFA---T 202 (583)
T ss_pred HHHHHHHHH-hcCCEEEeCCEEEEEEe--cCCccCCcEEEEEEEEcCCCeEEEEEeCeEEEC---C
No 337
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=21.92 E-value=1.5e+02 Score=26.46 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=32.0
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEcc-CCCc-cccccEEEecCCCCCCcchhhhc
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQS-LGQFNGVVASDKNVVSPRFRDVT 76 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~-~G~~-~~~~d~VIla~~~~p~~~a~~ll 76 (259)
.++++++++.+..+... ++++..|+.. +|+. ..++|.||-|+ -.-+..++.+
T Consensus 116 ~g~~~~~~~~~v~~~~~-~~~~~~V~~~~~g~~~~i~adlvIGAD--G~~S~VR~~l 169 (390)
T TIGR02360 116 AGLTTVYDADDVRLHDL-AGDRPYVTFERDGERHRLDCDFIAGCD--GFHGVSRASI 169 (390)
T ss_pred cCCeEEEeeeeEEEEec-CCCccEEEEEECCeEEEEEeCEEEECC--CCchhhHHhc
Confidence 46788999988777531 3455666664 6752 23789888884 2333344444
No 338
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.59 E-value=1e+02 Score=29.49 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=26.2
Q ss_pred CCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.-++||.||+-.. |.++-.|+-+|+.|++.+.+.
T Consensus 379 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 422 (588)
T PRK08958 379 VVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES 422 (588)
T ss_pred ccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4679999998533 236789999999999987654
No 339
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=21.36 E-value=1.1e+02 Score=28.08 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
++-+..+-.|.+|.. .++. |.++||..+ .||...+||- ..|.-.+++.
T Consensus 271 GvAvl~G~kvvkid~--~d~~--V~LnDG~~I-~YdkcLIATG--~~Pk~l~~~~ 318 (659)
T KOG1346|consen 271 GVAVLRGRKVVKIDE--EDKK--VILNDGTTI-GYDKCLIATG--VRPKKLQVFE 318 (659)
T ss_pred ceEEEeccceEEeec--ccCe--EEecCCcEe-ehhheeeecC--cCcccchhhh
Confidence 466788999999987 5554 455689874 8999999963 3333334443
No 340
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=20.94 E-value=1.3e+02 Score=27.17 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=26.9
Q ss_pred CCCCEEEeecCC----------CCCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFC----------VSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~----------~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+-. .|.++-.|+.+|+.|++.+.+..
T Consensus 386 ~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 386 APDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred CCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 457899999632 24478999999999999887653
No 341
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.72 E-value=1.3e+02 Score=28.64 Aligned_cols=51 Identities=8% Similarity=-0.051 Sum_probs=32.1
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecCCCce---EE-EccCCCc-cccccEEEecC
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLW---SV-SGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~---~v-~~~~G~~-~~~~d~VIla~ 64 (259)
.|.+.|.+ ..+++|..++.+..+-. ++++++ .+ ...+|+. ...+++|||||
T Consensus 127 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT 185 (570)
T PRK05675 127 ALLHTLYQGNLKNGTTFLNEWYAVDLVK-NQDGAVVGVIAICIETGETVYIKSKATVLAT 185 (570)
T ss_pred HHHHHHHHHHhccCCEEEECcEEEEEEE-cCCCeEEEEEEEEcCCCcEEEEecCeEEECC
Confidence 34444443 35789999999999875 123333 22 2346653 23789999994
No 342
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=20.68 E-value=1.5e+02 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=27.3
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+ ....-|+..|+.+|+.|..
T Consensus 308 Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 308 TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 346789999998752 3567899999999999874
No 343
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.58 E-value=1.4e+02 Score=28.40 Aligned_cols=41 Identities=20% Similarity=0.024 Sum_probs=28.3
Q ss_pred CCCeeEcceEEEEEEeecCCCceE----EEccCCCc-cccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~----v~~~~G~~-~~~~d~VIla~ 64 (259)
.+++|.+++.|.+|.. +++++. +...+|+. ...+++||+||
T Consensus 148 ~gi~i~~~t~v~~L~~--~~g~v~Gv~~~~~~~g~~~~i~AkaVVlAT 193 (575)
T PRK05945 148 YGVTIYDEWYVMRLIL--EDNQAKGVVMYHIADGRLEVVRAKAVMFAT 193 (575)
T ss_pred CCCEEEeCcEEEEEEE--ECCEEEEEEEEEcCCCeEEEEECCEEEECC
Confidence 5789999999999876 444322 23345642 24799999994
No 344
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=20.49 E-value=1.1e+02 Score=28.89 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=29.6
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceE-EEc-cCCCc-ccccc-EEEecCCCCC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWS-VSG-LDGQS-LGQFN-GVVASDKNVV 68 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~-~~G~~-~~~~d-~VIla~~~~p 68 (259)
+..+++|+++++|.+|.. +++++. |.. .+|+. ...++ .||||+-+..
T Consensus 219 ~~~gv~v~~~t~v~~l~~--~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 219 QRAGVPVLLNTPLTDLYV--EDGRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred HcCCCEEEeCCEEEEEEE--eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 446789999999999986 444432 222 24432 23675 6999844333
No 345
>PRK12839 hypothetical protein; Provisional
Probab=20.43 E-value=1.2e+02 Score=28.91 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=30.1
Q ss_pred cCCCCeeEcceEEEEEEeecCCCc---eEEEccCCCc-cccccEEEecCCCCC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQFNGVVASDKNVV 68 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~~-~~~~d~VIla~~~~p 68 (259)
+..+++|+++++|.+|... ++++ +.+...+|+. +..++.||||+-+..
T Consensus 225 ~~~Gv~i~~~t~v~~Li~~-~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 225 DDLGVDLRVSTSATSLTTD-KNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHCCCEEEcCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 3457899999999999751 2333 3344445642 223589999954433
No 346
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=20.19 E-value=1.2e+02 Score=28.64 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=27.8
Q ss_pred CCeeEcceEEEEEEeecCCCce---EEE--cc-------------CCCccccccEEEecCCCCC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLW---SVS--GL-------------DGQSLGQFNGVVASDKNVV 68 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~---~v~--~~-------------~G~~~~~~d~VIla~~~~p 68 (259)
+++|++++++.++.. +++++ .+. .. ++.....++.|||||-+..
T Consensus 166 gv~i~~~t~~~~Li~--~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 166 LVRFRFRHRVDELVV--TDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred CceEEecCEeeEEEE--eCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 489999999999986 44433 221 11 1222347899999954433
Done!