Query 024990
Match_columns 259
No_of_seqs 120 out of 1045
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 18:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 100.0 4.1E-38 1.4E-42 275.3 22.0 236 3-256 103-342 (342)
2 1yvv_A Amine oxidase, flavin-c 100.0 2.5E-28 8.5E-33 212.0 25.2 227 3-257 101-328 (336)
3 3nks_A Protoporphyrinogen oxid 100.0 9.8E-28 3.4E-32 218.0 14.7 232 4-255 226-473 (477)
4 3i6d_A Protoporphyrinogen oxid 99.9 1.2E-26 4E-31 210.0 14.5 229 4-256 227-468 (470)
5 3lov_A Protoporphyrinogen oxid 99.9 1.6E-26 5.5E-31 210.1 12.9 228 4-258 228-467 (475)
6 2ivd_A PPO, PPOX, protoporphyr 99.9 3.3E-25 1.1E-29 201.4 12.0 233 3-257 229-474 (478)
7 2yg5_A Putrescine oxidase; oxi 99.9 6.9E-23 2.4E-27 184.9 16.7 230 4-257 207-452 (453)
8 1s3e_A Amine oxidase [flavin-c 99.9 3.7E-22 1.3E-26 183.5 19.0 231 4-257 207-455 (520)
9 1sez_A Protoporphyrinogen oxid 99.9 2.8E-23 9.7E-28 190.0 10.3 232 4-257 235-494 (504)
10 3ka7_A Oxidoreductase; structu 99.9 1.6E-21 5.5E-26 174.4 17.7 225 5-253 189-424 (425)
11 2jae_A L-amino acid oxidase; o 99.9 6.5E-22 2.2E-26 180.4 13.9 229 4-257 231-486 (489)
12 1b37_A Protein (polyamine oxid 99.9 3.4E-20 1.2E-24 168.4 20.8 227 8-257 202-459 (472)
13 2z3y_A Lysine-specific histone 99.9 3.2E-20 1.1E-24 175.3 21.2 227 4-257 393-659 (662)
14 2xag_A Lysine-specific histone 99.8 5.2E-20 1.8E-24 177.1 19.4 225 4-256 564-829 (852)
15 2vvm_A Monoamine oxidase N; FA 99.8 5.4E-21 1.8E-25 174.5 12.0 224 4-257 247-486 (495)
16 3nrn_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 165.7 16.5 214 4-252 181-403 (421)
17 2iid_A L-amino-acid oxidase; f 99.8 1.3E-19 4.4E-24 165.5 15.6 229 4-257 233-485 (498)
18 4gut_A Lysine-specific histone 99.8 1.9E-18 6.6E-23 165.1 20.7 227 4-254 526-775 (776)
19 4dsg_A UDP-galactopyranose mut 99.8 4.1E-19 1.4E-23 162.0 10.0 224 6-253 210-452 (484)
20 1rsg_A FMS1 protein; FAD bindi 99.7 1.1E-15 3.9E-20 140.1 19.4 229 8-257 199-508 (516)
21 4gde_A UDP-galactopyranose mut 99.7 8.9E-17 3.1E-21 146.8 8.1 224 5-254 215-477 (513)
22 3k7m_X 6-hydroxy-L-nicotine ox 99.7 2E-15 6.9E-20 135.1 16.3 212 6-254 201-424 (431)
23 4dgk_A Phytoene dehydrogenase; 99.6 1.8E-15 6.2E-20 138.0 12.0 234 5-256 214-491 (501)
24 2b9w_A Putative aminooxidase; 99.6 3.3E-16 1.1E-20 140.0 6.7 216 4-253 198-423 (424)
25 3ayj_A Pro-enzyme of L-phenyla 99.5 1E-13 3.4E-18 130.7 12.3 242 3-257 338-680 (721)
26 3kkj_A Amine oxidase, flavin-c 99.4 3E-10 1E-14 93.1 24.4 227 3-257 101-328 (336)
27 2bi7_A UDP-galactopyranose mut 98.9 2.7E-09 9.3E-14 94.2 7.5 67 6-110 193-260 (384)
28 1v0j_A UDP-galactopyranose mut 98.8 1.5E-09 5.2E-14 96.3 3.8 75 6-112 199-273 (399)
29 1i8t_A UDP-galactopyranose mut 98.8 5.2E-09 1.8E-13 91.8 7.0 71 6-112 189-259 (367)
30 2e1m_C L-glutamate oxidase; L- 98.6 2.6E-08 8.8E-13 78.7 5.2 121 127-257 18-153 (181)
31 2bcg_G Secretory pathway GDP d 98.3 3.8E-06 1.3E-10 75.5 12.0 54 6-63 236-295 (453)
32 1d5t_A Guanine nucleotide diss 98.0 3.3E-05 1.1E-09 69.0 11.0 61 4-70 226-289 (433)
33 1vg0_A RAB proteins geranylger 97.0 0.082 2.8E-06 49.4 19.4 57 4-63 370-432 (650)
34 1ryi_A Glycine oxidase; flavop 97.0 0.0057 1.9E-07 52.9 11.1 193 13-255 165-362 (382)
35 3ihg_A RDME; flavoenzyme, anth 96.8 0.02 6.7E-07 52.2 13.2 52 21-77 132-190 (535)
36 3p1w_A Rabgdi protein; GDI RAB 96.7 0.0023 7.8E-08 57.7 6.0 60 3-63 247-309 (475)
37 2e1m_A L-glutamate oxidase; L- 96.6 0.0011 3.9E-08 57.9 3.7 59 3-64 311-369 (376)
38 2e1m_B L-glutamate oxidase; L- 96.5 0.0015 5E-08 48.3 2.7 52 56-115 7-58 (130)
39 3hdq_A UDP-galactopyranose mut 96.4 0.0046 1.6E-07 54.5 6.2 71 6-112 217-287 (397)
40 2qa2_A CABE, polyketide oxygen 96.4 0.14 4.6E-06 46.3 16.1 55 19-77 117-173 (499)
41 2qa1_A PGAE, polyketide oxygen 96.4 0.14 4.7E-06 46.3 15.9 55 19-77 116-172 (500)
42 3nix_A Flavoprotein/dehydrogen 96.3 0.045 1.5E-06 47.8 11.8 41 22-64 119-162 (421)
43 3e1t_A Halogenase; flavoprotei 96.2 0.047 1.6E-06 49.4 11.6 42 21-64 123-168 (512)
44 3fmw_A Oxygenase; mithramycin, 96.1 0.049 1.7E-06 50.1 11.7 51 22-77 161-214 (570)
45 3i3l_A Alkylhalidase CMLS; fla 95.8 0.062 2.1E-06 49.7 11.0 44 19-64 138-184 (591)
46 3cgv_A Geranylgeranyl reductas 95.4 0.26 8.8E-06 42.4 12.7 40 22-64 115-158 (397)
47 2dkh_A 3-hydroxybenzoate hydro 95.0 1.5 5.2E-05 40.7 17.5 33 223-255 341-379 (639)
48 3oz2_A Digeranylgeranylglycero 94.9 0.25 8.6E-06 42.2 11.1 34 223-256 276-315 (397)
49 3nyc_A D-arginine dehydrogenas 94.5 0.023 7.9E-07 48.8 3.5 39 21-63 166-204 (381)
50 4a9w_A Monooxygenase; baeyer-v 94.5 0.021 7.1E-07 48.4 3.1 49 12-64 79-128 (357)
51 3pvc_A TRNA 5-methylaminomethy 94.3 0.052 1.8E-06 51.1 5.7 48 13-63 413-464 (689)
52 3dje_A Fructosyl amine: oxygen 94.3 0.05 1.7E-06 47.9 5.3 40 21-63 173-216 (438)
53 2ywl_A Thioredoxin reductase r 94.2 0.047 1.6E-06 41.8 4.4 41 19-64 66-106 (180)
54 3ps9_A TRNA 5-methylaminomethy 94.2 0.044 1.5E-06 51.4 5.0 48 13-63 418-468 (676)
55 3dme_A Conserved exported prot 94.1 0.058 2E-06 45.9 5.3 40 21-63 162-204 (369)
56 3gwf_A Cyclohexanone monooxyge 93.9 0.042 1.4E-06 50.3 4.1 53 11-64 89-143 (540)
57 3d1c_A Flavin-containing putat 93.9 0.074 2.5E-06 45.4 5.4 46 15-64 94-139 (369)
58 4ap3_A Steroid monooxygenase; 93.8 0.042 1.5E-06 50.3 3.9 53 11-64 101-155 (549)
59 2gv8_A Monooxygenase; FMO, FAD 93.7 0.052 1.8E-06 48.1 4.3 47 15-64 121-173 (447)
60 2xdo_A TETX2 protein; tetracyc 93.7 0.097 3.3E-06 45.5 5.9 49 13-64 129-178 (398)
61 2uzz_A N-methyl-L-tryptophan o 93.6 0.12 4E-06 44.3 6.2 39 21-63 161-199 (372)
62 2x3n_A Probable FAD-dependent 93.6 0.089 3.1E-06 45.6 5.5 39 23-64 122-162 (399)
63 1xdi_A RV3303C-LPDA; reductase 93.1 0.11 3.7E-06 46.8 5.4 50 12-64 226-275 (499)
64 2i0z_A NAD(FAD)-utilizing dehy 93.0 0.097 3.3E-06 46.5 4.8 50 12-64 134-187 (447)
65 2v3a_A Rubredoxin reductase; a 92.9 0.11 3.6E-06 45.1 4.9 47 14-63 192-238 (384)
66 2vou_A 2,6-dihydroxypyridine h 92.9 0.09 3.1E-06 45.7 4.5 49 12-63 99-148 (397)
67 2oln_A NIKD protein; flavoprot 92.9 0.094 3.2E-06 45.4 4.5 39 21-63 165-203 (397)
68 3lxd_A FAD-dependent pyridine 92.8 0.13 4.5E-06 45.0 5.4 49 12-63 197-246 (415)
69 3v76_A Flavoprotein; structura 92.8 0.066 2.3E-06 47.3 3.4 50 12-65 132-184 (417)
70 3uox_A Otemo; baeyer-villiger 92.6 0.045 1.5E-06 50.1 2.1 52 12-64 90-143 (545)
71 4hb9_A Similarities with proba 92.6 0.19 6.5E-06 43.3 6.0 50 13-64 113-162 (412)
72 2gf3_A MSOX, monomeric sarcosi 92.5 0.12 4.2E-06 44.4 4.8 47 13-63 151-200 (389)
73 3rp8_A Flavoprotein monooxygen 92.5 0.12 4.1E-06 45.0 4.6 38 24-64 140-177 (407)
74 3iwa_A FAD-dependent pyridine 92.4 0.13 4.6E-06 45.8 5.0 49 13-64 206-254 (472)
75 1w4x_A Phenylacetone monooxyge 92.4 0.14 4.7E-06 46.7 5.1 51 13-64 98-150 (542)
76 1y56_B Sarcosine oxidase; dehy 92.4 0.14 4.9E-06 43.9 5.0 39 21-63 161-200 (382)
77 3o0h_A Glutathione reductase; 92.3 0.14 4.8E-06 45.9 4.9 44 18-64 241-284 (484)
78 3lzw_A Ferredoxin--NADP reduct 92.2 0.18 6.3E-06 42.0 5.3 43 18-64 76-119 (332)
79 3oc4_A Oxidoreductase, pyridin 92.0 0.24 8.1E-06 44.0 6.1 49 12-64 192-240 (452)
80 3ef6_A Toluene 1,2-dioxygenase 92.0 0.12 4E-06 45.3 4.0 49 12-63 188-236 (410)
81 1pn0_A Phenol 2-monooxygenase; 91.6 5.3 0.00018 37.2 15.0 33 223-255 350-388 (665)
82 1m6i_A Programmed cell death p 91.6 0.2 6.7E-06 45.1 5.1 49 12-63 229-277 (493)
83 3s5w_A L-ornithine 5-monooxyge 91.4 0.18 6E-06 44.7 4.5 52 12-64 130-188 (463)
84 2zbw_A Thioredoxin reductase; 91.3 0.22 7.5E-06 41.8 4.9 42 20-64 76-117 (335)
85 3fg2_P Putative rubredoxin red 91.3 0.19 6.4E-06 43.8 4.5 48 13-63 188-236 (404)
86 2yqu_A 2-oxoglutarate dehydrog 91.0 0.17 5.8E-06 44.9 4.0 41 20-63 219-259 (455)
87 3fpz_A Thiazole biosynthetic e 91.0 0.081 2.8E-06 44.7 1.8 37 221-257 281-325 (326)
88 2gqf_A Hypothetical protein HI 90.9 0.19 6.5E-06 44.0 4.2 54 11-68 108-168 (401)
89 3nlc_A Uncharacterized protein 90.8 0.27 9.3E-06 45.0 5.2 40 22-64 233-273 (549)
90 1fl2_A Alkyl hydroperoxide red 90.6 0.32 1.1E-05 40.3 5.2 47 17-64 64-111 (310)
91 1mo9_A ORF3; nucleotide bindin 90.6 0.24 8.2E-06 44.9 4.7 45 17-64 263-312 (523)
92 2gag_B Heterotetrameric sarcos 90.5 0.36 1.2E-05 41.6 5.6 38 22-63 187-225 (405)
93 3s5w_A L-ornithine 5-monooxyge 90.4 0.35 1.2E-05 42.8 5.5 41 22-64 329-373 (463)
94 1fec_A Trypanothione reductase 90.3 0.32 1.1E-05 43.7 5.2 47 15-64 237-284 (490)
95 3ab1_A Ferredoxin--NADP reduct 90.3 0.44 1.5E-05 40.5 5.9 42 20-64 85-127 (360)
96 2r9z_A Glutathione amide reduc 90.3 0.29 9.8E-06 43.6 4.8 46 16-64 214-260 (463)
97 2wpf_A Trypanothione reductase 90.1 0.37 1.3E-05 43.3 5.4 48 14-64 240-288 (495)
98 3f8d_A Thioredoxin reductase ( 89.8 0.42 1.4E-05 39.6 5.2 42 19-64 80-121 (323)
99 1ges_A Glutathione reductase; 89.8 0.33 1.1E-05 43.0 4.8 44 17-63 216-260 (450)
100 4dna_A Probable glutathione re 89.5 0.42 1.4E-05 42.4 5.3 47 14-64 216-264 (463)
101 2xve_A Flavin-containing monoo 88.9 0.25 8.7E-06 44.0 3.4 35 221-255 305-339 (464)
102 3fbs_A Oxidoreductase; structu 88.7 0.52 1.8E-05 38.5 5.0 37 221-257 255-292 (297)
103 2eq6_A Pyruvate dehydrogenase 88.7 0.51 1.7E-05 42.0 5.2 47 15-64 216-267 (464)
104 2q0l_A TRXR, thioredoxin reduc 88.7 0.5 1.7E-05 39.1 4.9 38 221-258 271-310 (311)
105 2hqm_A GR, grase, glutathione 88.5 0.39 1.3E-05 42.9 4.3 46 16-64 233-281 (479)
106 1onf_A GR, grase, glutathione 88.4 0.66 2.2E-05 41.7 5.8 48 15-64 223-271 (500)
107 1k0i_A P-hydroxybenzoate hydro 88.0 0.57 2E-05 40.3 5.0 48 14-64 109-159 (394)
108 1ojt_A Surface protein; redox- 87.9 0.49 1.7E-05 42.3 4.6 48 14-64 231-282 (482)
109 1zmd_A Dihydrolipoyl dehydroge 87.8 0.76 2.6E-05 40.9 5.8 48 14-64 225-278 (474)
110 2qae_A Lipoamide, dihydrolipoy 87.4 0.64 2.2E-05 41.3 5.1 47 15-64 221-272 (468)
111 3klj_A NAD(FAD)-dependent dehy 87.4 0.44 1.5E-05 41.4 3.9 39 21-64 74-112 (385)
112 3itj_A Thioredoxin reductase 1 87.0 0.77 2.6E-05 38.2 5.1 50 11-63 211-266 (338)
113 3f8d_A Thioredoxin reductase ( 86.7 0.97 3.3E-05 37.3 5.5 50 12-63 193-246 (323)
114 2cdu_A NADPH oxidase; flavoenz 86.6 0.77 2.6E-05 40.5 5.1 47 14-64 196-243 (452)
115 2cul_A Glucose-inhibited divis 86.5 1 3.5E-05 35.9 5.3 37 221-257 196-232 (232)
116 3lad_A Dihydrolipoamide dehydr 86.3 0.75 2.6E-05 40.9 4.9 49 13-64 225-276 (476)
117 3c4n_A Uncharacterized protein 86.3 0.38 1.3E-05 41.9 2.8 39 21-63 184-231 (405)
118 3itj_A Thioredoxin reductase 1 86.0 1 3.4E-05 37.5 5.3 37 221-257 297-335 (338)
119 3r9u_A Thioredoxin reductase; 85.1 1.1 3.7E-05 36.9 5.0 51 11-63 185-239 (315)
120 2a8x_A Dihydrolipoyl dehydroge 84.6 0.9 3.1E-05 40.2 4.5 47 15-64 218-267 (464)
121 1dxl_A Dihydrolipoamide dehydr 84.3 1 3.6E-05 39.8 4.8 47 15-64 224-275 (470)
122 1vdc_A NTR, NADPH dependent th 84.2 0.79 2.7E-05 38.3 3.8 37 221-257 285-323 (333)
123 1hyu_A AHPF, alkyl hydroperoxi 84.2 1.2 4.1E-05 40.2 5.2 45 19-64 277-322 (521)
124 3atr_A Conserved archaeal prot 83.8 1.3 4.5E-05 39.0 5.2 34 223-256 281-320 (453)
125 1ebd_A E3BD, dihydrolipoamide 83.4 0.84 2.9E-05 40.3 3.8 46 16-64 218-266 (455)
126 2q7v_A Thioredoxin reductase; 83.4 2.6 8.9E-05 35.0 6.7 50 12-63 191-244 (325)
127 3ntd_A FAD-dependent pyridine 83.4 1.1 3.9E-05 40.6 4.7 56 13-69 196-268 (565)
128 2weu_A Tryptophan 5-halogenase 83.3 1.4 4.9E-05 39.4 5.3 39 21-63 185-225 (511)
129 1trb_A Thioredoxin reductase; 83.3 1.6 5.6E-05 36.0 5.4 42 20-63 195-242 (320)
130 3vrd_B FCCB subunit, flavocyto 83.3 0.34 1.2E-05 42.0 1.1 40 21-63 214-253 (401)
131 1zk7_A HGII, reductase, mercur 83.2 0.93 3.2E-05 40.2 4.0 45 16-64 223-267 (467)
132 2qcu_A Aerobic glycerol-3-phos 83.0 1.4 4.9E-05 39.4 5.2 40 22-63 162-205 (501)
133 1trb_A Thioredoxin reductase; 83.0 1.3 4.6E-05 36.5 4.7 37 221-257 276-314 (320)
134 1qo8_A Flavocytochrome C3 fuma 82.5 1.7 5.7E-05 39.7 5.5 43 21-65 262-309 (566)
135 2q0l_A TRXR, thioredoxin reduc 82.5 2.4 8.1E-05 34.9 6.0 50 12-63 182-236 (311)
136 3dgh_A TRXR-1, thioredoxin red 82.5 1.7 5.8E-05 38.7 5.4 49 14-64 232-285 (483)
137 2cul_A Glucose-inhibited divis 82.4 1.3 4.5E-05 35.2 4.2 37 23-63 83-120 (232)
138 4b63_A L-ornithine N5 monooxyg 82.2 1.4 4.9E-05 39.6 4.8 51 14-64 150-210 (501)
139 3urh_A Dihydrolipoyl dehydroge 82.1 1.2 4.1E-05 39.8 4.3 50 13-64 243-296 (491)
140 3d1c_A Flavin-containing putat 81.8 0.95 3.2E-05 38.3 3.4 43 19-63 224-267 (369)
141 3ic9_A Dihydrolipoamide dehydr 81.8 2.3 7.8E-05 38.0 6.0 38 24-64 229-270 (492)
142 2e4g_A Tryptophan halogenase; 81.7 1.4 4.8E-05 40.0 4.7 37 23-63 209-247 (550)
143 1y0p_A Fumarate reductase flav 81.5 2.3 7.8E-05 38.8 6.0 42 21-64 267-313 (571)
144 2bry_A NEDD9 interacting prote 81.3 1.4 4.9E-05 39.5 4.5 43 21-64 178-226 (497)
145 2q7v_A Thioredoxin reductase; 81.3 1.7 6E-05 36.0 4.8 36 222-257 275-312 (325)
146 1y56_A Hypothetical protein PH 81.2 1.5 5.2E-05 39.2 4.7 51 10-64 259-309 (493)
147 1nhp_A NADH peroxidase; oxidor 81.0 1.9 6.6E-05 37.9 5.2 48 13-64 195-242 (447)
148 4b1b_A TRXR, thioredoxin reduc 80.9 1.6 5.5E-05 39.8 4.7 46 16-64 270-315 (542)
149 3cgb_A Pyridine nucleotide-dis 80.9 2.2 7.5E-05 38.0 5.6 47 15-64 99-148 (480)
150 4g6h_A Rotenone-insensitive NA 80.7 1.2 4.1E-05 40.1 3.8 52 11-64 274-328 (502)
151 1q1r_A Putidaredoxin reductase 80.4 1.3 4.4E-05 38.9 3.8 47 16-63 198-245 (431)
152 1d4d_A Flavocytochrome C fumar 80.3 2.4 8.2E-05 38.8 5.7 43 21-65 267-314 (572)
153 1pj5_A N,N-dimethylglycine oxi 80.3 1.4 4.6E-05 42.4 4.2 38 22-63 164-202 (830)
154 3l8k_A Dihydrolipoyl dehydroge 80.0 1.2 4E-05 39.6 3.4 51 12-64 214-268 (466)
155 2zbw_A Thioredoxin reductase; 79.9 2.2 7.4E-05 35.5 5.0 42 20-63 202-247 (335)
156 1rp0_A ARA6, thiazole biosynth 79.8 2.3 7.9E-05 34.9 5.0 49 13-63 124-186 (284)
157 3h8l_A NADH oxidase; membrane 79.8 0.97 3.3E-05 39.2 2.8 42 15-63 224-265 (409)
158 3alj_A 2-methyl-3-hydroxypyrid 79.7 1.8 6.1E-05 37.0 4.4 44 14-64 113-156 (379)
159 4gcm_A TRXR, thioredoxin reduc 79.7 1.5 5E-05 36.3 3.8 37 221-257 268-306 (312)
160 4at0_A 3-ketosteroid-delta4-5a 79.7 2.2 7.4E-05 38.4 5.1 51 13-66 203-262 (510)
161 2bc0_A NADH oxidase; flavoprot 79.7 2.6 8.9E-05 37.6 5.7 47 13-64 240-287 (490)
162 3fbs_A Oxidoreductase; structu 78.8 2.3 7.8E-05 34.5 4.7 38 23-64 71-108 (297)
163 2aqj_A Tryptophan halogenase, 78.7 2.6 9E-05 38.0 5.4 39 21-63 177-217 (538)
164 2gqw_A Ferredoxin reductase; f 77.7 1.9 6.5E-05 37.5 4.0 41 19-64 69-109 (408)
165 2pyx_A Tryptophan halogenase; 77.7 3.4 0.00012 37.2 5.8 38 22-63 189-228 (526)
166 3dk9_A Grase, GR, glutathione 77.6 3.7 0.00013 36.3 6.0 48 14-64 233-289 (478)
167 2a87_A TRXR, TR, thioredoxin r 77.4 2.7 9.1E-05 35.1 4.8 36 221-256 278-315 (335)
168 1v59_A Dihydrolipoamide dehydr 77.3 2.3 8E-05 37.6 4.6 50 14-64 229-283 (478)
169 2gqw_A Ferredoxin reductase; f 77.3 2.1 7.1E-05 37.2 4.2 45 12-63 190-234 (408)
170 3ics_A Coenzyme A-disulfide re 76.9 2 6.9E-05 39.2 4.1 47 14-65 233-279 (588)
171 2r0c_A REBC; flavin adenine di 76.8 2.9 0.0001 37.9 5.1 48 26-77 152-203 (549)
172 3axb_A Putative oxidoreductase 76.7 2.4 8.1E-05 37.1 4.4 73 178-255 345-418 (448)
173 3cty_A Thioredoxin reductase; 76.3 3.2 0.00011 34.3 4.9 37 221-257 278-316 (319)
174 2gqf_A Hypothetical protein HI 76.3 1.4 4.7E-05 38.5 2.7 34 221-254 361-400 (401)
175 3ics_A Coenzyme A-disulfide re 76.2 3 0.0001 38.1 5.1 48 15-64 99-148 (588)
176 3hyw_A Sulfide-quinone reducta 75.8 1.7 5.8E-05 38.1 3.1 38 20-63 67-104 (430)
177 1fl2_A Alkyl hydroperoxide red 75.7 3.2 0.00011 34.0 4.7 36 222-257 268-305 (310)
178 3ab1_A Ferredoxin--NADP reduct 75.6 2 6.9E-05 36.3 3.5 41 21-63 214-258 (360)
179 1xhc_A NADH oxidase /nitrite r 75.5 1.5 5.1E-05 37.6 2.7 38 21-64 72-109 (367)
180 3r9u_A Thioredoxin reductase; 75.4 3.2 0.00011 33.9 4.7 37 221-257 274-312 (315)
181 3cty_A Thioredoxin reductase; 75.2 3.2 0.00011 34.3 4.6 41 19-64 82-122 (319)
182 3cgb_A Pyridine nucleotide-dis 75.0 3 0.0001 37.0 4.7 44 17-64 235-278 (480)
183 3iwa_A FAD-dependent pyridine 74.3 3.2 0.00011 36.7 4.6 47 15-64 72-121 (472)
184 3lzw_A Ferredoxin--NADP reduct 74.2 4.2 0.00014 33.5 5.1 50 11-63 192-245 (332)
185 2zxi_A TRNA uridine 5-carboxym 74.1 4 0.00014 37.9 5.3 46 15-64 130-176 (637)
186 3ef6_A Toluene 1,2-dioxygenase 74.1 2.2 7.7E-05 37.0 3.5 39 21-64 69-107 (410)
187 3ntd_A FAD-dependent pyridine 74.0 2.2 7.5E-05 38.7 3.5 47 16-64 65-113 (565)
188 2ywl_A Thioredoxin reductase r 73.2 4.5 0.00015 30.3 4.7 36 221-256 133-170 (180)
189 3c96_A Flavin-containing monoo 73.2 2.3 7.8E-05 36.8 3.3 32 223-254 302-339 (410)
190 3kd9_A Coenzyme A disulfide re 72.9 1.6 5.6E-05 38.4 2.3 43 18-64 68-110 (449)
191 1q1r_A Putidaredoxin reductase 72.6 2.6 9.1E-05 36.9 3.6 40 20-64 71-110 (431)
192 1m6i_A Programmed cell death p 72.0 2.1 7E-05 38.4 2.8 38 22-64 103-140 (493)
193 1vdc_A NTR, NADPH dependent th 71.7 4 0.00014 33.8 4.4 41 19-64 80-120 (333)
194 2bc0_A NADH oxidase; flavoprot 71.3 2.3 8E-05 37.9 3.0 42 20-64 103-145 (490)
195 3lxd_A FAD-dependent pyridine 71.0 2.8 9.7E-05 36.3 3.4 40 20-64 76-115 (415)
196 4fk1_A Putative thioredoxin re 71.0 7.1 0.00024 32.0 5.8 38 220-257 261-300 (304)
197 3hyw_A Sulfide-quinone reducta 70.2 4.4 0.00015 35.4 4.5 48 12-63 203-251 (430)
198 3nlc_A Uncharacterized protein 69.4 13 0.00044 33.8 7.5 36 222-257 507-543 (549)
199 2rgh_A Alpha-glycerophosphate 69.2 4 0.00014 37.3 4.1 42 20-63 199-245 (571)
200 2gmh_A Electron transfer flavo 69.1 6.4 0.00022 36.0 5.5 34 223-256 346-385 (584)
201 4a5l_A Thioredoxin reductase; 68.4 5.9 0.0002 32.4 4.7 37 221-257 274-312 (314)
202 4a9w_A Monooxygenase; baeyer-v 68.2 4.5 0.00015 33.6 4.0 39 219-257 310-352 (357)
203 3dgz_A Thioredoxin reductase 2 67.7 7.2 0.00024 34.6 5.4 51 13-64 229-283 (488)
204 3ces_A MNMG, tRNA uridine 5-ca 67.6 5.9 0.0002 36.9 4.9 34 222-255 383-416 (651)
205 3h28_A Sulfide-quinone reducta 67.6 3.6 0.00012 35.9 3.3 47 12-63 203-251 (430)
206 2vdc_G Glutamate synthase [NAD 67.5 5.2 0.00018 35.4 4.4 36 221-256 407-443 (456)
207 2a87_A TRXR, TR, thioredoxin r 67.3 6.2 0.00021 32.8 4.7 41 19-64 81-122 (335)
208 3cp8_A TRNA uridine 5-carboxym 67.2 5.6 0.00019 37.0 4.6 34 222-255 377-410 (641)
209 3da1_A Glycerol-3-phosphate de 66.9 4.4 0.00015 36.9 3.9 41 21-63 182-227 (561)
210 1lvl_A Dihydrolipoamide dehydr 66.9 5.2 0.00018 35.3 4.2 41 19-64 222-264 (458)
211 1nhp_A NADH peroxidase; oxidor 66.7 6.5 0.00022 34.4 4.9 42 21-64 68-111 (447)
212 2e5v_A L-aspartate oxidase; ar 66.6 3.4 0.00012 36.7 3.0 47 12-64 123-172 (472)
213 4eqs_A Coenzyme A disulfide re 65.2 7.7 0.00026 34.0 5.0 47 11-64 190-236 (437)
214 2i0z_A NAD(FAD)-utilizing dehy 64.6 3.9 0.00013 36.0 3.0 36 222-257 403-444 (447)
215 2wdq_A Succinate dehydrogenase 62.9 12 0.00041 34.3 6.0 41 22-64 156-202 (588)
216 3k30_A Histamine dehydrogenase 62.9 5 0.00017 37.5 3.5 47 12-63 570-619 (690)
217 4fk1_A Putative thioredoxin re 62.6 4.5 0.00015 33.3 2.8 36 27-64 78-113 (304)
218 3v76_A Flavoprotein; structura 61.5 3.3 0.00011 36.3 1.9 31 221-251 380-416 (417)
219 2h88_A Succinate dehydrogenase 60.9 12 0.00042 34.5 5.7 50 13-64 156-213 (621)
220 3sx6_A Sulfide-quinone reducta 60.9 9.3 0.00032 33.3 4.7 36 222-257 296-344 (437)
221 3kd9_A Coenzyme A disulfide re 60.7 7.9 0.00027 33.9 4.3 45 15-64 196-240 (449)
222 3oc4_A Oxidoreductase, pyridin 60.4 6.1 0.00021 34.6 3.5 41 21-64 70-111 (452)
223 1kf6_A Fumarate reductase flav 58.9 11 0.00037 34.7 4.9 41 22-64 147-193 (602)
224 1ps9_A 2,4-dienoyl-COA reducta 58.2 9.4 0.00032 35.5 4.5 47 12-63 576-623 (671)
225 1rp0_A ARA6, thiazole biosynth 57.9 6.8 0.00023 32.0 3.1 35 224-258 234-276 (284)
226 3sx6_A Sulfide-quinone reducta 57.1 10 0.00035 33.0 4.3 48 11-63 210-264 (437)
227 1hyu_A AHPF, alkyl hydroperoxi 57.1 11 0.00037 33.9 4.5 36 222-257 479-516 (521)
228 2cdu_A NADPH oxidase; flavoenz 57.0 7.5 0.00026 34.0 3.4 42 20-64 69-113 (452)
229 1n4w_A CHOD, cholesterol oxida 56.6 10 0.00035 33.9 4.3 35 222-256 461-500 (504)
230 1coy_A Cholesterol oxidase; ox 55.5 10 0.00034 34.0 4.0 40 22-63 240-288 (507)
231 3l8k_A Dihydrolipoyl dehydroge 54.4 15 0.00051 32.3 5.0 35 221-255 298-333 (466)
232 1xhc_A NADH oxidase /nitrite r 54.4 6.2 0.00021 33.7 2.4 42 14-63 188-229 (367)
233 1chu_A Protein (L-aspartate ox 54.3 8.4 0.00029 34.9 3.3 36 221-256 365-410 (540)
234 2bs2_A Quinol-fumarate reducta 53.1 17 0.00057 33.9 5.2 50 13-64 159-216 (660)
235 1ebd_A E3BD, dihydrolipoamide 52.4 13 0.00044 32.6 4.2 34 221-254 298-332 (455)
236 3h8l_A NADH oxidase; membrane 52.1 16 0.00055 31.3 4.7 35 222-256 298-335 (409)
237 3fg2_P Putative rubredoxin red 51.8 11 0.00036 32.5 3.5 38 21-64 69-106 (404)
238 4eqs_A Coenzyme A disulfide re 50.7 15 0.0005 32.1 4.3 47 16-64 64-112 (437)
239 1y56_A Hypothetical protein PH 49.3 18 0.00062 32.1 4.7 35 223-257 343-377 (493)
240 2a8x_A Dihydrolipoyl dehydroge 49.0 15 0.0005 32.3 4.0 34 221-254 299-333 (464)
241 2v3a_A Rubredoxin reductase; a 48.1 8.1 0.00028 33.0 2.1 43 16-64 67-109 (384)
242 3k30_A Histamine dehydrogenase 47.9 9 0.00031 35.8 2.5 34 223-256 641-674 (690)
243 3atr_A Conserved archaeal prot 46.7 20 0.00069 31.3 4.5 40 22-64 113-158 (453)
244 1v59_A Dihydrolipoamide dehydr 46.4 21 0.00073 31.3 4.7 34 221-254 315-349 (478)
245 1dxl_A Dihydrolipoamide dehydr 46.1 12 0.00041 32.9 2.9 34 221-254 307-341 (470)
246 3h28_A Sulfide-quinone reducta 44.2 25 0.00087 30.3 4.8 36 222-257 285-333 (430)
247 3cp8_A TRNA uridine 5-carboxym 43.1 19 0.00065 33.5 3.8 46 15-64 124-170 (641)
248 2gjc_A Thiazole biosynthetic e 42.9 24 0.00083 29.7 4.2 36 222-257 282-325 (326)
249 2gmh_A Electron transfer flavo 42.3 23 0.0008 32.2 4.4 41 21-64 156-213 (584)
250 3f7w_A Putative fructosamine-3 42.2 18 0.00063 29.2 3.4 38 10-53 1-41 (288)
251 3qfa_A Thioredoxin reductase 1 42.1 29 0.001 31.0 4.9 50 15-64 256-311 (519)
252 1kdg_A CDH, cellobiose dehydro 41.9 16 0.00055 32.8 3.2 49 14-64 201-257 (546)
253 2gag_A Heterotetrameric sarcos 41.8 24 0.00082 34.4 4.6 36 222-257 409-444 (965)
254 3vrd_B FCCB subunit, flavocyto 39.5 28 0.00097 29.5 4.3 36 221-256 284-323 (401)
255 3c96_A Flavin-containing monoo 39.1 27 0.00091 29.9 4.0 48 14-64 113-165 (410)
256 3ces_A MNMG, tRNA uridine 5-ca 39.0 1.1E+02 0.0038 28.4 8.3 39 22-64 138-177 (651)
257 3klj_A NAD(FAD)-dependent dehy 38.9 21 0.00073 30.5 3.3 35 221-255 255-294 (385)
258 1nvp_D Transcription initiatio 38.8 74 0.0025 22.1 5.5 54 12-70 41-100 (108)
259 2jbv_A Choline oxidase; alcoho 38.7 18 0.00062 32.7 3.0 41 21-63 221-268 (546)
260 3pl8_A Pyranose 2-oxidase; sub 38.3 13 0.00043 34.4 1.9 51 23-75 274-331 (623)
261 4hb9_A Similarities with proba 37.6 25 0.00086 29.6 3.6 33 223-255 310-348 (412)
262 3jsk_A Cypbp37 protein; octame 37.2 25 0.00084 29.9 3.4 36 222-257 292-335 (344)
263 3ic9_A Dihydrolipoamide dehydr 36.6 32 0.0011 30.4 4.2 34 221-254 303-337 (492)
264 1o94_A Tmadh, trimethylamine d 36.1 17 0.00058 34.2 2.4 34 223-256 666-699 (729)
265 1zk7_A HGII, reductase, mercur 35.8 34 0.0012 29.9 4.2 34 221-254 299-333 (467)
266 1xdi_A RV3303C-LPDA; reductase 35.6 28 0.00096 30.8 3.7 35 221-255 307-342 (499)
267 2x8g_A Thioredoxin glutathione 35.5 47 0.0016 30.1 5.3 48 17-64 334-391 (598)
268 1gte_A Dihydropyrimidine dehyd 35.2 34 0.0012 33.6 4.4 36 221-256 471-507 (1025)
269 1ojt_A Surface protein; redox- 34.9 22 0.00074 31.4 2.8 34 221-254 314-348 (482)
270 2x3n_A Probable FAD-dependent 34.8 27 0.00092 29.6 3.3 34 223-256 285-324 (399)
271 1cjc_A Protein (adrenodoxin re 34.7 19 0.00066 31.7 2.4 34 223-256 359-394 (460)
272 3urh_A Dihydrolipoyl dehydroge 34.1 36 0.0012 30.0 4.1 35 221-255 328-363 (491)
273 2xdo_A TETX2 protein; tetracyc 33.9 31 0.0011 29.3 3.6 30 225-254 315-350 (398)
274 3lad_A Dihydrolipoamide dehydr 33.3 43 0.0015 29.3 4.5 35 221-255 308-343 (476)
275 1o94_A Tmadh, trimethylamine d 33.3 33 0.0011 32.2 3.9 41 19-63 581-641 (729)
276 3dgh_A TRXR-1, thioredoxin red 33.2 44 0.0015 29.4 4.5 35 221-255 316-352 (483)
277 2zxi_A TRNA uridine 5-carboxym 33.0 1.5E+02 0.0051 27.4 8.1 34 221-254 387-420 (637)
278 2qae_A Lipoamide, dihydrolipoy 31.8 39 0.0013 29.5 4.0 34 221-254 304-339 (468)
279 2hqm_A GR, grase, glutathione 31.8 47 0.0016 29.2 4.5 34 221-254 312-346 (479)
280 3dk9_A Grase, GR, glutathione 31.3 45 0.0015 29.2 4.3 35 221-255 321-356 (478)
281 3gwf_A Cyclohexanone monooxyge 31.3 27 0.00093 31.5 2.9 35 23-64 344-380 (540)
282 1ju2_A HydroxynitrIle lyase; f 31.1 36 0.0012 30.6 3.7 43 20-64 205-257 (536)
283 3dgz_A Thioredoxin reductase 2 30.9 47 0.0016 29.2 4.3 35 221-255 316-352 (488)
284 3c4a_A Probable tryptophan hyd 30.6 39 0.0013 28.5 3.6 31 224-254 262-298 (381)
285 4dna_A Probable glutathione re 30.4 47 0.0016 28.9 4.3 35 221-255 296-331 (463)
286 1lqt_A FPRA; NADP+ derivative, 29.6 24 0.00083 31.0 2.2 35 222-256 350-386 (456)
287 3rp8_A Flavoprotein monooxygen 29.6 38 0.0013 28.7 3.5 32 223-254 300-337 (407)
288 4a5l_A Thioredoxin reductase; 29.3 68 0.0023 25.7 4.8 40 21-64 78-117 (314)
289 2vou_A 2,6-dihydroxypyridine h 29.3 40 0.0014 28.6 3.5 31 224-254 299-335 (397)
290 3o0h_A Glutathione reductase; 29.0 51 0.0018 28.9 4.3 35 221-255 316-351 (484)
291 1jnr_A Adenylylsulfate reducta 28.9 70 0.0024 29.5 5.3 40 23-64 166-214 (643)
292 2x8g_A Thioredoxin glutathione 28.7 53 0.0018 29.7 4.4 35 221-255 423-459 (598)
293 1ges_A Glutathione reductase; 28.7 52 0.0018 28.6 4.2 34 221-254 293-327 (450)
294 3qfa_A Thioredoxin reductase 1 28.2 55 0.0019 29.1 4.3 34 221-254 344-379 (519)
295 3uox_A Otemo; baeyer-villiger 28.1 35 0.0012 30.8 3.1 34 23-64 352-387 (545)
296 1zmd_A Dihydrolipoyl dehydroge 27.2 56 0.0019 28.5 4.2 35 221-255 310-345 (474)
297 1nh2_D Transcription initiatio 27.0 1.2E+02 0.004 21.6 4.9 33 12-46 45-77 (121)
298 1fec_A Trypanothione reductase 26.8 61 0.0021 28.5 4.4 34 221-254 316-350 (490)
299 2r9z_A Glutathione amide reduc 26.5 60 0.002 28.3 4.2 34 221-254 292-326 (463)
300 3t37_A Probable dehydrogenase; 26.4 39 0.0013 29.9 3.0 45 18-64 220-267 (526)
301 1k0i_A P-hydroxybenzoate hydro 26.2 45 0.0015 28.1 3.3 33 223-255 278-316 (394)
302 2wpf_A Trypanothione reductase 26.2 64 0.0022 28.5 4.4 34 221-254 320-354 (495)
303 2yqu_A 2-oxoglutarate dehydrog 26.0 69 0.0024 27.7 4.5 33 222-254 293-326 (455)
304 2eq6_A Pyruvate dehydrogenase 25.1 64 0.0022 28.1 4.1 34 221-254 299-333 (464)
305 1y0p_A Fumarate reductase flav 25.0 33 0.0011 31.0 2.2 35 222-256 525-568 (571)
306 1qo8_A Flavocytochrome C3 fuma 25.0 36 0.0012 30.7 2.5 35 222-256 520-563 (566)
307 1d4d_A Flavocytochrome C fumar 24.6 34 0.0011 31.0 2.2 34 223-256 527-569 (572)
308 1mo9_A ORF3; nucleotide bindin 24.4 60 0.0021 28.9 3.9 34 221-254 343-377 (523)
309 1gpe_A Protein (glucose oxidas 24.2 37 0.0013 30.9 2.4 54 20-73 242-302 (587)
310 1lvl_A Dihydrolipoamide dehydr 23.8 69 0.0023 27.9 4.1 33 222-254 296-329 (458)
311 3jsk_A Cypbp37 protein; octame 23.6 49 0.0017 28.1 2.9 26 12-37 164-189 (344)
312 3alj_A 2-methyl-3-hydroxypyrid 23.1 34 0.0012 28.8 1.9 30 224-253 281-316 (379)
313 3gyx_A Adenylylsulfate reducta 23.0 58 0.002 30.3 3.5 50 13-64 171-229 (662)
314 3g5s_A Methylenetetrahydrofola 22.9 57 0.0019 28.7 3.2 34 222-255 327-360 (443)
315 3qvp_A Glucose oxidase; oxidor 22.8 72 0.0024 29.1 4.0 55 21-75 239-300 (583)
316 4at0_A 3-ketosteroid-delta4-5a 22.7 32 0.0011 30.6 1.6 33 222-254 467-508 (510)
317 2xve_A Flavin-containing monoo 21.7 89 0.003 27.3 4.4 47 18-64 110-162 (464)
318 2r0c_A REBC; flavin adenine di 21.2 45 0.0015 30.0 2.4 33 223-255 308-346 (549)
319 4g6h_A Rotenone-insensitive NA 20.0 74 0.0025 28.3 3.5 33 222-254 363-398 (502)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=275.27 Aligned_cols=236 Identities=22% Similarity=0.326 Sum_probs=199.3
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
.+|+..+||++++++|++.++++|+++++|.+|++ ++++|+|++.+|+.+ .||+||+| +|++++.+|+....|
T Consensus 103 ~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~--~~~~~~v~~~~g~~~-~ad~vV~A---~p~~~~~~ll~~~~~- 175 (342)
T 3qj4_A 103 CNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINL--RDDKWEVSKQTGSPE-QFDLIVLT---MPVPEILQLQGDITT- 175 (342)
T ss_dssp EEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEE--CSSSEEEEESSSCCE-EESEEEEC---SCHHHHTTCBSTHHH-
T ss_pred cceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEE--cCCEEEEEECCCCEE-EcCEEEEC---CCHHHHHHHhccccc-
Confidence 46899999999999999988889999999999998 778999998888754 89999999 999999999975211
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCC-CCccceeecCCCceEEEEecCCCCCCC--CCCceEEEEeCHHHHHH
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRS--ANSERWVLHSTADYART 159 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~g~~~~~~~~l~~~~~~~~k~~~~--~~~~~~~~~~~~~~~~~ 159 (259)
.++++..+.++.++|.+++++++.|+++++. .|+.|+.+++++.+.|++++++|++|. ++...+++++++.|+.+
T Consensus 176 --~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~ 253 (342)
T 3qj4_A 176 --LISECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVT 253 (342)
T ss_dssp --HSCHHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHH
T ss_pred --ccCHHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHH
Confidence 0344678899999999999999999986543 678898887766789999999998864 23458899999999998
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCCeee-cCCCCEEEeecCCCCCCh
Q 024990 160 VIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNV 238 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~~~~-~~~~~l~laGD~~~g~~i 238 (259)
+++. +++++.+.++++|.++++..++|+++++|||+|++|++.......++. +..++|++||||+.|++|
T Consensus 254 ~~~~---------~~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~~~~~~~~~~~~~l~laGd~~~g~~v 324 (342)
T 3qj4_A 254 YLEH---------SIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNF 324 (342)
T ss_dssp TTTS---------CHHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSSSCSCEEEETTTEEEECSGGGSCSSH
T ss_pred hhcC---------CHHHHHHHHHHHHHHhccCCCCCceeeeccccccccccccCCCcceeEecCCccEEEEccccCCCCc
Confidence 8776 679999999999999888778999999999999999986532233444 677899999999999999
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 024990 239 EGAILSGLDAASKLTEIL 256 (259)
Q Consensus 239 e~A~~SG~~aA~~l~~~l 256 (259)
|+|++||++||++|++.|
T Consensus 325 ~~ai~sg~~aa~~i~~~l 342 (342)
T 3qj4_A 325 DGCITSALCVLEALKNYI 342 (342)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred cHHHHHHHHHHHHHHhhC
Confidence 999999999999998754
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.97 E-value=2.5e-28 Score=211.95 Aligned_cols=227 Identities=32% Similarity=0.593 Sum_probs=190.3
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
.+|....||+.|.++|+++ ++|+++++|.+|++ ++++|+|++.+|+....+|.||+| +|++++.+++..
T Consensus 101 ~~~~~~~~~~~l~~~l~~g--~~i~~~~~v~~i~~--~~~~~~v~~~~g~~~~~a~~vV~a---~g~~~~~~~~~~---- 169 (336)
T 1yvv_A 101 VRWVGKPGMSAITRAMRGD--MPVSFSCRITEVFR--GEEHWNLLDAEGQNHGPFSHVIIA---TPAPQASTLLAA---- 169 (336)
T ss_dssp CEEEESSCTHHHHHHHHTT--CCEECSCCEEEEEE--CSSCEEEEETTSCEEEEESEEEEC---SCHHHHGGGGTT----
T ss_pred ccEEcCccHHHHHHHHHcc--CcEEecCEEEEEEE--eCCEEEEEeCCCcCccccCEEEEc---CCHHHHHHhhcc----
Confidence 4688899999999999984 57799999999998 778999999888754348999999 899999888864
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHh
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIA 162 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
.|.+...+..+.|.+++++++.|+++.+ .+..++++++ .++.|++.++.+|++.+....++++.+++|+.++.+
T Consensus 170 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~ 243 (336)
T 1yvv_A 170 ----APKLASVVAGVKMDPTWAVALAFETPLQ-TPMQGCFVQD-SPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLD 243 (336)
T ss_dssp ----CHHHHHHHTTCCEEEEEEEEEEESSCCS-CCCCEEEECS-SSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTT
T ss_pred ----CHHHHHHHhhcCccceeEEEEEecCCCC-CCCCeEEeCC-CceeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHh
Confidence 4677788999999999999999998866 4667766654 478999888888887653357899999999887766
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHhcCC-CCCCCceEeEeeccccCCCCCcCCCCCeeecCCCCEEEeecCCCCCChhHH
Q 024990 163 QTGLQKPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGA 241 (259)
Q Consensus 163 ~~~~~~~~~~~~e~v~~~l~~~~~~~~~-~~~~p~~~~~~rW~~a~p~~~~g~~~~~~~~~~~~l~laGD~~~g~~ie~A 241 (259)
. +++++.+++++.+.++++ ..+.|....++||++++|++..++ ...++..++|++||||+.+++||+|
T Consensus 244 ~---------~~~~~~~~l~~~l~~~lg~~~~~p~~~~~~rw~~a~~~~~~~~--~~~~~~~~rl~laGDa~~g~gv~~a 312 (336)
T 1yvv_A 244 A---------SREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEW--GALSDADLGIYVCGDWCLSGRVEGA 312 (336)
T ss_dssp S---------CHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEEEEESSCCCC--SCEEETTTTEEECCGGGTTSSHHHH
T ss_pred C---------CHHHHHHHHHHHHHHHhCCCCCCCcEEEccccCccCCCCCCCC--CeeecCCCCEEEEecCCCCCCHHHH
Confidence 5 578899999999998765 445788899999999999887643 4555677899999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 024990 242 ILSGLDAASKLTEILS 257 (259)
Q Consensus 242 ~~SG~~aA~~l~~~l~ 257 (259)
++||.++|+.|.+.+.
T Consensus 313 ~~sg~~lA~~l~~~~~ 328 (336)
T 1yvv_A 313 WLSGQEAARRLLEHLQ 328 (336)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998763
No 3
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=99.95 E-value=9.8e-28 Score=217.99 Aligned_cols=232 Identities=17% Similarity=0.142 Sum_probs=180.2
Q ss_pred ceecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecCCCCCCcchhhhcCCC
Q 024990 4 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 79 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~ 79 (259)
-|..++||+.|+++|++.+ +++|+++++|++|++ ++++ |.|++.++ . ..||+||+| +|++++.+|++.
T Consensus 226 ~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~~~~~v~~~~~-~-~~ad~vv~a---~p~~~~~~ll~~- 297 (477)
T 3nks_A 226 QWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSL--QAEGRWKVSLRDS-S-LEADHVISA---IPASVLSELLPA- 297 (477)
T ss_dssp EEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEE--CGGGCEEEECSSC-E-EEESEEEEC---SCHHHHHHHSCG-
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE--cCCceEEEEECCe-E-EEcCEEEEC---CCHHHHHHhccc-
Confidence 4788999999999999877 679999999999998 6666 99987544 4 389999999 999999999875
Q ss_pred CCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecC---CCceEEEEecCCC-CCCC--CCCceEEEEeC
Q 024990 80 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQD---SEVLSWAHCDSSK-PGRS--ANSERWVLHST 153 (259)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~---~~~l~~~~~~~~k-~~~~--~~~~~~~~~~~ 153 (259)
..+.+.+.+.++.|.+++++++.|+++.+..+..|++++. ..++.++ +++.+ |++. ++...++++.+
T Consensus 298 ------~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~l~~~~g 370 (477)
T 3nks_A 298 ------EAAPLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIV-YDSVAFPEQDGSPPGLRVTVMLG 370 (477)
T ss_dssp ------GGHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEE-CHHHHCGGGSTTTTCEEEEEEEC
T ss_pred ------cCHHHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEE-EeccccCCCCCCCCceEEEEEEC
Confidence 5677888999999999999999999886533334666653 2355664 45444 4432 23456778888
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCC------eeecCCCCEE
Q 024990 154 ADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER------CLWDVKRRLA 227 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~------~~~~~~~~l~ 227 (259)
..|...+.+... +.+++++.+.+++++.++++..++|...+++||+++.|++.+|+... .+....++|+
T Consensus 371 g~~~~~~~~~~~-----~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~ 445 (477)
T 3nks_A 371 GSWLQTLEASGC-----VLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLT 445 (477)
T ss_dssp HHHHHHHHHSSC-----CCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEE
T ss_pred CccccccccccC-----CCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 888876653210 11568889999999988766556899999999999999998876321 1223356899
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHhh
Q 024990 228 ICGDFCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 228 laGD~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+||||+.|.+|++|+.||+++|++|+..
T Consensus 446 l~G~~~~G~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 446 LAGASYEGVAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp ECSTTTSCCSHHHHHHHHHHHHHHHHHC
T ss_pred EEccCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 4
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=99.94 E-value=1.2e-26 Score=210.02 Aligned_cols=229 Identities=12% Similarity=0.141 Sum_probs=175.6
Q ss_pred ceecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
.+..++||++|+++|++.+. ++|+++++|.+|++ ++++|.|++.+|+.+ .||+||+| +|++.+.+++..+
T Consensus 227 ~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g~~~-~ad~vi~a---~p~~~~~~l~~~~--- 297 (470)
T 3i6d_A 227 FQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSH--SGSCYSLELDNGVTL-DADSVIVT---APHKAAAGMLSEL--- 297 (470)
T ss_dssp EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEE--CSSSEEEEESSSCEE-EESEEEEC---SCHHHHHHHTTTS---
T ss_pred EEEeCChHHHHHHHHHHhcCCCEEEeCCceEEEEE--cCCeEEEEECCCCEE-ECCEEEEC---CCHHHHHHHcCCc---
Confidence 35778999999999999997 68999999999998 777899999899654 89999999 9999999998752
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCCCC--ccceeecCCCc--eEEEEecCCC-CCCCCC-CceEEEEeCHHH
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSEV--LSWAHCDSSK-PGRSAN-SERWVLHSTADY 156 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~g~~~~~~~~--l~~~~~~~~k-~~~~~~-~~~~~~~~~~~~ 156 (259)
.+.++++.+.|.++.++++.|+++++..+ ..|++++.... +..+++++.+ +.+.+. ...++++.+..+
T Consensus 298 ------~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~ 371 (470)
T 3i6d_A 298 ------PAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAG 371 (470)
T ss_dssp ------TTHHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSS
T ss_pred ------hhhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCC
Confidence 24577889999999999999999876433 34555654322 2234444332 222222 234555655544
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCC------CeeecCCCCEEEee
Q 024990 157 ARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICG 230 (259)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~------~~~~~~~~~l~laG 230 (259)
+..+... +++++.+.+++.+.++++..++|....++||+++.|++.+|+.. +.+..+.++|++||
T Consensus 372 ~~~~~~~---------~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG 442 (470)
T 3i6d_A 372 DESIVDL---------SDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTG 442 (470)
T ss_dssp CCGGGTS---------CHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECS
T ss_pred CccccCC---------CHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 4333333 57889999999999987766789999999999999998887521 12234567999999
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 231 DFCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 231 D~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
||+.|.+|++|++||+++|++|++.|
T Consensus 443 ~~~~g~gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 443 ASFEGVGIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp TTTSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876
No 5
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=99.94 E-value=1.6e-26 Score=210.07 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=171.9
Q ss_pred ceecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
-+..++||++|+++|++.++ ++|+++++|.+|++ ++++|+|++.+| . ..||+||+| +|++.+.+++..+ +
T Consensus 228 ~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g-~-~~ad~vV~a---~p~~~~~~ll~~~-~- 298 (475)
T 3lov_A 228 FLSLETGLESLIERLEEVLERSEIRLETPLLAISR--EDGRYRLKTDHG-P-EYADYVLLT---IPHPQVVQLLPDA-H- 298 (475)
T ss_dssp EEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEE--ETTEEEEECTTC-C-EEESEEEEC---SCHHHHHHHCTTS-C-
T ss_pred EEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEE--eCCEEEEEECCC-e-EECCEEEEC---CCHHHHHHHcCcc-C-
Confidence 36789999999999999997 78999999999998 677899999888 4 389999999 9999999998762 1
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCc--cceeecCCC--ceEEEEecCCC-CCCCCCCceEEEEeCHHHH
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPV--KGFSFQDSE--VLSWAHCDSSK-PGRSANSERWVLHSTADYA 157 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~--~g~~~~~~~--~l~~~~~~~~k-~~~~~~~~~~~~~~~~~~~ 157 (259)
+ +.++.+.|.++.++++.|++++ ..+. .|++++... .+..+++.+.+ +...++...++++.+..++
T Consensus 299 -------~-~~~~~~~~~~~~~v~l~~~~~~-~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~ 369 (475)
T 3lov_A 299 -------L-PELEQLTTHSTATVTMIFDQQQ-SLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGN 369 (475)
T ss_dssp -------C-HHHHTCCEEEEEEEEEEEECCS-SCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTB
T ss_pred -------H-HHHhcCCCCeEEEEEEEECCcC-CCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCC
Confidence 1 6788899999999999999876 3344 345555432 23334444333 3333321234455544443
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCC------CeeecCCCCEEEeec
Q 024990 158 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGD 231 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~------~~~~~~~~~l~laGD 231 (259)
..+.+. +++++.+.+++++.++++...+|....++||+++.|++.+|+.. +.+..+.++|++|||
T Consensus 370 ~~~~~~---------~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~ 440 (475)
T 3lov_A 370 DHLVHE---------SDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGL 440 (475)
T ss_dssp CGGGGS---------CHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECST
T ss_pred CcccCC---------CHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEcc
Confidence 333333 57889999999999886655689999999999999998887521 123345679999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhcc
Q 024990 232 FCVSPNVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 232 ~~~g~~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
|+.+.+|++|++||+++|++|+..+..
T Consensus 441 ~~~g~g~~~a~~sG~~aA~~i~~~l~~ 467 (475)
T 3lov_A 441 AYDGVGLPDCVASAKTMIESIELEQSH 467 (475)
T ss_dssp TTSCSSHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987753
No 6
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=99.92 E-value=3.3e-25 Score=201.43 Aligned_cols=233 Identities=16% Similarity=0.144 Sum_probs=170.0
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc---cCCCccccccEEEecCCCCCCcchhhhcCCC
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 79 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~---~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~ 79 (259)
..|.+++||++|+++|++.++++|+++++|.+|+. ++++|.|++ .+|+.+ .||+||+| +|++.+.+|++.
T Consensus 229 ~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~-~ad~vV~a---~~~~~~~~ll~~- 301 (478)
T 2ivd_A 229 ALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAR--EDGGWRLIIEEHGRRAEL-SVAQVVLA---APAHATAKLLRP- 301 (478)
T ss_dssp CEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEEC--C--CCEEEEEETTEEEEE-ECSEEEEC---SCHHHHHHHHTT-
T ss_pred cEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEe--cCCeEEEEEeecCCCceE-EcCEEEEC---CCHHHHHHHhhc-
Confidence 35788999999999999999889999999999998 667899987 566554 89999999 999999999864
Q ss_pred CCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCC-CccceeecC--CCceEEEEecCCC-CCCCCC-CceEEEEeCH
Q 024990 80 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI-PVKGFSFQD--SEVLSWAHCDSSK-PGRSAN-SERWVLHSTA 154 (259)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~g~~~~~--~~~l~~~~~~~~k-~~~~~~-~~~~~~~~~~ 154 (259)
+++...+.+++++|.+++++++.|+++++.. ...+++++. ...+.++.+++.+ +++.+. ...++++.+.
T Consensus 302 ------l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~ 375 (478)
T 2ivd_A 302 ------LDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGG 375 (478)
T ss_dssp ------TCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEEC
T ss_pred ------cCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCC
Confidence 5677788899999999999999999876533 223334432 1223345555543 333332 2355666554
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCC--e---eecCCCCEEEe
Q 024990 155 DYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER--C---LWDVKRRLAIC 229 (259)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~--~---~~~~~~~l~la 229 (259)
.++....+. +++++.+.+++.+.++++....|....+++|.++.|.+.+++... . .....++|++|
T Consensus 376 ~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~a 446 (478)
T 2ivd_A 376 ARQPGLVEQ---------DEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLI 446 (478)
T ss_dssp TTCGGGGGS---------CHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEEC
T ss_pred cCCccccCC---------CHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEE
Confidence 443322222 568888889999988766556788888999999998877654110 0 01124799999
Q ss_pred ecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 230 GDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 230 GD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
|||+.|.+|++|+.||+++|++|+..++
T Consensus 447 G~~~~g~gv~gA~~SG~~aA~~i~~~l~ 474 (478)
T 2ivd_A 447 GNAYKGVGLNDCIRNAAQLADALVAGNT 474 (478)
T ss_dssp STTTSCCSHHHHHHHHHHHHHHHCC---
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999888999999999999999988764
No 7
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.90 E-value=6.9e-23 Score=184.95 Aligned_cols=230 Identities=11% Similarity=0.128 Sum_probs=164.8
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
.|..++||++|+++|++.++++|++|++|.+|+. ++++ |.|++ +|+.+ .+|+||+| +|+..+.+++.. ++
T Consensus 207 ~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~--~~~~~v~v~~-~~~~~-~ad~VI~a---~p~~~~~~l~~~-p~- 277 (453)
T 2yg5_A 207 DKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKW--NESGATVLAD-GDIRV-EASRVILA---VPPNLYSRISYD-PP- 277 (453)
T ss_dssp CEEETTCTHHHHHHHHHHHGGGEECSCCEEEEEE--ETTEEEEEET-TTEEE-EEEEEEEC---SCGGGGGGSEEE-SC-
T ss_pred eEEEcCChHHHHHHHHHhcCCcEEcCCceEEEEE--eCCceEEEEE-CCeEE-EcCEEEEc---CCHHHHhcCEeC-CC-
Confidence 4788999999999999999889999999999998 6677 99987 56554 89999999 999988888643 12
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCC-CCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHH
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVI 161 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 161 (259)
+++...++++.+.|.++.++++.|++++|. .++.|..+.....+.+++.. +.+... ...++++....++..+.
T Consensus 278 ---lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--~~~l~~~~~~~~~~~~~ 351 (453)
T 2yg5_A 278 ---LPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDN-TNHEDD--RGTLVAFVSDEKADAMF 351 (453)
T ss_dssp ---CCHHHHHHGGGEEECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCEEEEC-CCTTCS--SEEEEEEEEHHHHHHHH
T ss_pred ---CCHHHHHHHhcCCCcceEEEEEEECCCCCCCCCCCceeecCCCCeEEEEeC-CCCCCC--CCEEEEEeccHHHHHHh
Confidence 566777889999999999999999988763 23344444443445555433 343211 23566666665655443
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHHHhcCCC-CCCCceEeEeeccccCC-------CCCcCCC---CCeeecCCCCEEEee
Q 024990 162 AQTGLQKPSEATLKKVAEEMFQEFQGTGLS-IPLPIFRKAHRWGSAFP-------AASIAKE---ERCLWDVKRRLAICG 230 (259)
Q Consensus 162 ~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~-~~~p~~~~~~rW~~a~p-------~~~~g~~---~~~~~~~~~~l~laG 230 (259)
.. +++++.+.+++.++++++. ..+|..+..++|..... .+.+|+. .+.+..+.++|++||
T Consensus 352 ~~---------~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG 422 (453)
T 2yg5_A 352 EL---------SAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSC 422 (453)
T ss_dssp HS---------CHHHHHHHHHHHHHHHHCGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECC
T ss_pred cC---------CHHHHHHHHHHHHHHHhCccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEee
Confidence 33 4678888888888876543 35788888999974321 2222211 112334567999999
Q ss_pred cCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 024990 231 DFCV---SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 231 D~~~---g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
|++. .++|+||++||++||++|++.++
T Consensus 423 ~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 452 (453)
T 2yg5_A 423 SDIAAEGYQHVDGAVRMGQRTAADIIARSK 452 (453)
T ss_dssp GGGCSTTTTSHHHHHHHHHHHHHHHHHHC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 9873 35899999999999999998764
No 8
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.89 E-value=3.7e-22 Score=183.47 Aligned_cols=231 Identities=15% Similarity=0.144 Sum_probs=164.8
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 83 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~ 83 (259)
.+...+||++|+++|++.++++|++|++|.+|+. ++++|+|++.+|+.+ .||+||+| +|+..+.+++.. ++
T Consensus 207 ~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~VI~a---~p~~~l~~l~~~-p~-- 277 (520)
T 1s3e_A 207 ERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQ--TRENVLVETLNHEMY-EAKYVISA---IPPTLGMKIHFN-PP-- 277 (520)
T ss_dssp SEEETTCTHHHHHHHHHHHGGGEESSCCEEEEEC--SSSSEEEEETTSCEE-EESEEEEC---SCGGGGGGSEEE-SC--
T ss_pred eEEEeCCHHHHHHHHHHHcCCcEEcCCeeEEEEE--CCCeEEEEECCCeEE-EeCEEEEC---CCHHHHcceeeC-CC--
Confidence 3678999999999999988889999999999998 777899998888764 89999999 999998888743 22
Q ss_pred CCcchhHHHHhccCCCcceeEEEEeccCCCCC-CCccceee--cCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHH
Q 024990 84 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSF--QDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTV 160 (259)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~g~~~--~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
+++...++++.+.|.++.++++.|++++|. .++.|+.+ .....+.++ +++..+... ...++.+.....+...
T Consensus 278 --lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~-~d~~~~~~~--~~~l~~~~~~~~a~~~ 352 (520)
T 1s3e_A 278 --LPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYT-LDDTKPEGN--YAAIMGFILAHKARKL 352 (520)
T ss_dssp --CCHHHHHHTTSCCBCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEE-EECCCTTSC--SCEEEEEEETHHHHHH
T ss_pred --CCHHHHHHHHhCCCcceEEEEEEeCCCcccCCCCCceeeccCCCCceEEE-eeCCCCCCC--CCEEEEEccchhhhhh
Confidence 566778889999999999999999998763 23345443 233344444 444443211 1355555544434333
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCCceEeEeeccccCC-------CCCcCCC---CCeeecCCCCEEE
Q 024990 161 IAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAFP-------AASIAKE---ERCLWDVKRRLAI 228 (259)
Q Consensus 161 ~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~a~p-------~~~~g~~---~~~~~~~~~~l~l 228 (259)
... +++++.+.+++.+.++++. ...|..+..++|..... .+.+|+. .+.+..+.++|++
T Consensus 353 ~~~---------~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~f 423 (520)
T 1s3e_A 353 ARL---------TKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYF 423 (520)
T ss_dssp TTS---------CHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEE
T ss_pred hcC---------CHHHHHHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEE
Confidence 222 4677888888888876553 34788899999975321 1222211 1122334578999
Q ss_pred eecCC---CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 229 CGDFC---VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 229 aGD~~---~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
|||++ ..++|+||++||++||++|+..+.
T Consensus 424 AG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l~ 455 (520)
T 1s3e_A 424 AGTETATHWSGYMEGAVEAGERAAREILHAMG 455 (520)
T ss_dssp CSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred eehhhcCcCcEEhHHHHHHHHHHHHHHHHHHh
Confidence 99986 346899999999999999998764
No 9
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=99.89 E-value=2.8e-23 Score=189.97 Aligned_cols=232 Identities=16% Similarity=0.192 Sum_probs=162.2
Q ss_pred ceecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCc------eEEEcc--CC---CccccccEEEecCCCCCCcc
Q 024990 4 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNL------WSVSGL--DG---QSLGQFNGVVASDKNVVSPR 71 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~------~~v~~~--~G---~~~~~~d~VIla~~~~p~~~ 71 (259)
-|..++||++|+++|++.++ .+|++|++|.+|+. ++++ |.|+.. +| +. ..||+||+| +|++.
T Consensus 235 ~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~~~~~~~v~~~~~~g~~~~~-~~ad~VI~a---~p~~~ 308 (504)
T 1sez_A 235 SFSFLGGMQTLTDAICKDLREDELRLNSRVLELSC--SCTEDSAIDSWSIISASPHKRQSEE-ESFDAVIMT---APLCD 308 (504)
T ss_dssp CBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEE--ECSSSSSSCEEEEEEBCSSSSCBCC-CEESEEEEC---SCHHH
T ss_pred eEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEe--cCCCCcccceEEEEEcCCCCcccee-EECCEEEEC---CCHHH
Confidence 46789999999999999997 78999999999998 5555 777654 45 34 389999999 99999
Q ss_pred hhhhcCC--CCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCC--ccceeecCCC-----ceEEEEecCCC-CCC
Q 024990 72 FRDVTGR--PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSE-----VLSWAHCDSSK-PGR 141 (259)
Q Consensus 72 a~~ll~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~g~~~~~~~-----~l~~~~~~~~k-~~~ 141 (259)
+.+++.. ..| +.+. .+..+.|.++.++++.|+++.+..+ ..+++++..+ .+..+++.+.+ |..
T Consensus 309 l~~ll~~~~~~~----~~~~---~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~ 381 (504)
T 1sez_A 309 VKSMKIAKRGNP----FLLN---FIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDR 381 (504)
T ss_dssp HHTSEEESSSSB----CCCT---TSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGG
T ss_pred HHHHhhcccCCc----ccHH---HHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCc
Confidence 9998831 011 2222 2677889999999999988765322 2444454211 11122222222 333
Q ss_pred CCCC-ceEEEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCC---
Q 024990 142 SANS-ERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER--- 217 (259)
Q Consensus 142 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~--- 217 (259)
.+.+ ..++++.....+...... +++++.+.+++.+.++++...+|....++||.++.|++.+|+...
T Consensus 382 ~p~g~~~l~~~~~g~~~~~~~~~---------~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~ 452 (504)
T 1sez_A 382 APNNVYLYTTFVGGSRNRELAKA---------SRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDA 452 (504)
T ss_dssp SCTTEEEEEEEEESTTCGGGTTC---------CHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHH
T ss_pred CCCCCEEEEEEeCCCCcccccCC---------CHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHH
Confidence 3322 234455543332222222 567888899999988766555788899999999999988775321
Q ss_pred --eeecCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 218 --CLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 218 --~~~~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
....+.++|++||+++.|.++++|+.||++||++|++.+.
T Consensus 453 ~~~~~~~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il~~l~ 494 (504)
T 1sez_A 453 IDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLE 494 (504)
T ss_dssp HHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1123467899999999999999999999999999998774
No 10
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=99.88 E-value=1.6e-21 Score=174.39 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=161.5
Q ss_pred eecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEecCCCCCCcchhhhcCCCC
Q 024990 5 YVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 80 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~ 80 (259)
+.+.+||+.|++.|++.+ +++|+++++|++|+. ++++|+ |+++ |+.+ .+|+||+| +|+..+.+|++...
T Consensus 189 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~~~gv~~~-g~~~-~ad~VV~a---~~~~~~~~ll~~~~ 261 (425)
T 3ka7_A 189 GIPEGGCKGIIDALETVISANGGKIHTGQEVSKILI--ENGKAAGIIAD-DRIH-DADLVISN---LGHAATAVLCSEAL 261 (425)
T ss_dssp EEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEE--ETTEEEEEEET-TEEE-ECSEEEEC---SCHHHHHHHTTTTC
T ss_pred cccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEE--ECCEEEEEEEC-CEEE-ECCEEEEC---CCHHHHHHhcCCcc
Confidence 567899999999998765 689999999999998 667776 6654 6554 89999999 99999999997522
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCC-CceEEEEecCCC-CCCCCCCc-eEEEEeCHHHH
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS-EVLSWAHCDSSK-PGRSANSE-RWVLHSTADYA 157 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~-~~l~~~~~~~~k-~~~~~~~~-~~~~~~~~~~~ 157 (259)
.+ ..++.+.+.++++.|.+.+++++.|++++. +..+++++.+ ..+.++.+.+.+ |+++|.+. .+.++....|
T Consensus 262 ~~--~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~- 336 (425)
T 3ka7_A 262 SK--EADAAYFKMVGTLQPSAGIKICLAADEPLV--GHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP- 336 (425)
T ss_dssp CT--TTTHHHHHHHHHCCCBEEEEEEEEESSCSS--CSSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECG-
T ss_pred cc--cCCHHHHHHhhCcCCCceEEEEeecCCCcc--CcCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEecccc-
Confidence 10 015667788899999999999999998753 4455555433 235556656555 56665433 3334433222
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCC-CeeecCCCCEEEeecCCCC-
Q 024990 158 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE-RCLWDVKRRLAICGDFCVS- 235 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~-~~~~~~~~~l~laGD~~~g- 235 (259)
+..+ ..++.++.++++++++++. ..++...+++|+.+.|++.+++.. +....+.++|++||||+.+
T Consensus 337 -~~~~----------~~~~~~~~~~~~l~~~~p~-~~~~~~~v~~~~~~~P~~~~~~~~~~~~~~p~~gL~laG~~~~~~ 404 (425)
T 3ka7_A 337 -ENVK----------NLESEIEMGLEDLKEIFPG-KRYEVLLIQSYHDEWPVNRAASGTDPGNETPFSGLYVVGDGAKGK 404 (425)
T ss_dssp -GGGG----------GHHHHHHHHHHHHHHHSTT-CCEEEEEEEEEBTTBCSBSSCTTCCCCSBCSSBTEEECSTTSCCT
T ss_pred -cccc----------chHHHHHHHHHHHHHhCCC-CceEEEEEEEECCCccccccccCCCCCCCCCcCCeEEeCCccCCC
Confidence 1111 1234458888999988765 467778999999999999887632 2223445689999999987
Q ss_pred --CChhHHHHHHHHHHHHHH
Q 024990 236 --PNVEGAILSGLDAASKLT 253 (259)
Q Consensus 236 --~~ie~A~~SG~~aA~~l~ 253 (259)
.+|++|+.||+++|++|+
T Consensus 405 gg~gv~~~~~s~~~~~~~i~ 424 (425)
T 3ka7_A 405 GGIEVEGVALGVMSVMEKVL 424 (425)
T ss_dssp TCCHHHHHHHHHHHHHHC--
T ss_pred CCCccHHHHHHHHHHHHHhh
Confidence 699999999999999886
No 11
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.87 E-value=6.5e-22 Score=180.38 Aligned_cols=229 Identities=14% Similarity=0.067 Sum_probs=162.3
Q ss_pred ceecCCCchHHHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccCC---CccccccEEEecCCCCCCcchhhhcCCC
Q 024990 4 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASDKNVVSPRFRDVTGRP 79 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G---~~~~~~d~VIla~~~~p~~~a~~ll~~~ 79 (259)
.|..++||++|+++|++.++ .+|++|++|++|++ ++++|+|++.+| +. ..||+||+| +|+..+..++..
T Consensus 231 ~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~v~v~~~~g~~~~~-~~ad~vI~a---~p~~~l~~l~~~- 303 (489)
T 2jae_A 231 MFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKN--VSEGVTVEYTAGGSKKS-ITADYAICT---IPPHLVGRLQNN- 303 (489)
T ss_dssp EEEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEE--ETTEEEEEEEETTEEEE-EEESEEEEC---SCHHHHTTSEEC-
T ss_pred EEeecCCHHHHHHHHHHhcCCCeEEECCEEEEEEE--cCCeEEEEEecCCeEEE-EECCEEEEC---CCHHHHHhCccC-
Confidence 46789999999999999998 88999999999998 677899988776 34 389999999 999887777653
Q ss_pred CCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCC--CCcccee-ecCCCceEEEEecCCCCCCCCCCceEE-EEeCHH
Q 024990 80 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFS-FQDSEVLSWAHCDSSKPGRSANSERWV-LHSTAD 155 (259)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~g~~-~~~~~~l~~~~~~~~k~~~~~~~~~~~-~~~~~~ 155 (259)
+++...++++++.|.++.++++.|++++|. ....|.. ..+. .+..+.+.+.+.. .+ ...++ .++...
T Consensus 304 ------l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~-~~~~~~~~s~~~~-~~-~~~l~~~~~~g~ 374 (489)
T 2jae_A 304 ------LPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDK-DISQIMFPYDHYN-SD-RGVVVAYYSSGK 374 (489)
T ss_dssp ------CCHHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESS-TTCEEECCSSSTT-SS-CEEEEEEEEETH
T ss_pred ------CCHHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCCC-CceEEEeCCCCCC-CC-CCEEEEEeeCCc
Confidence 567788899999999999999999987653 2344322 3333 3445555554421 12 12333 344444
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCCceEeEeeccccCCC---CC---------cCCCC---Ce
Q 024990 156 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAFPA---AS---------IAKEE---RC 218 (259)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~a~p~---~~---------~g~~~---~~ 218 (259)
.+...... +++++.+.+++.+.++++. ..+|.....++|...... +. ++... +.
T Consensus 375 ~~~~~~~~---------~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 445 (489)
T 2jae_A 375 RQEAFESL---------THRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEK 445 (489)
T ss_dssp HHHHHHTS---------CHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHH
T ss_pred hhhhhhcC---------CHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHH
Confidence 44433322 4678888888898887664 356777788999865321 10 11000 01
Q ss_pred eecCCCCEEEeecCC--CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 219 LWDVKRRLAICGDFC--VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 219 ~~~~~~~l~laGD~~--~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..+.++|++||+++ .+++++||+.||+++|++|+..+.
T Consensus 446 l~~~~~~l~faG~~~~~~~~~v~gAi~sg~~aA~~i~~~l~ 486 (489)
T 2jae_A 446 LLEPVDKIYFAGDHLSNAIAWQHGALTSARDVVTHIHERVA 486 (489)
T ss_dssp HTSCBTTEEECSGGGBSSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCcEEEeEHHhccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 123567999999976 578999999999999999998764
No 12
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.86 E-value=3.4e-20 Score=168.42 Aligned_cols=227 Identities=16% Similarity=0.168 Sum_probs=157.9
Q ss_pred CCCchHHHHHHhcCC-----------CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhc
Q 024990 8 VPGMNSICKALCHQP-----------GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVT 76 (259)
Q Consensus 8 ~~Gm~~l~~~La~~l-----------~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll 76 (259)
.+||++|+++|++.+ +.+|+++++|.+|+. ++++|+|++.+|+.+ .+|+||+| +|+..+..++
T Consensus 202 ~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~vI~a---~~~~~l~~~~ 275 (472)
T 1b37_A 202 QRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKY--SPGGVTVKTEDNSVY-SADYVMVS---ASLGVLQSDL 275 (472)
T ss_dssp TTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEE--CSSCEEEEETTSCEE-EESEEEEC---SCHHHHHTTS
T ss_pred CCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEE--cCCcEEEEECCCCEE-EcCEEEEe---cCHHHhccCC
Confidence 789999999999886 468999999999998 778899999898764 89999999 9998887765
Q ss_pred CC-CCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCC-Cccceee-cC-C-C-ceEEEEecCCCCCCCCCCceEEE
Q 024990 77 GR-PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI-PVKGFSF-QD-S-E-VLSWAHCDSSKPGRSANSERWVL 150 (259)
Q Consensus 77 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~g~~~-~~-~-~-~l~~~~~~~~k~~~~~~~~~~~~ 150 (259)
.. .++ +++...++++.+.|.++.++++.|++++|.. +..++.+ .+ . . ...|...+...| +...+++
T Consensus 276 ~~~~p~----Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~l~~ 347 (472)
T 1b37_A 276 IQFKPK----LPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYP----DANVLLV 347 (472)
T ss_dssp SEEESC----CCHHHHHHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEECTTTST----TCCEEEE
T ss_pred eeECCC----CCHHHHHHHHhcCCcceeEEEEECCCcCCCCCCCcceEEecccCCccceeeecccCCCC----CCCEEEE
Confidence 32 122 5666788899999999999999999988742 1222322 11 1 1 112332222222 2234555
Q ss_pred EeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCCceEeEeeccc------cCCCCCcCCCC---Cee
Q 024990 151 HSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGS------AFPAASIAKEE---RCL 219 (259)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~------a~p~~~~g~~~---~~~ 219 (259)
......+...... +++++.+.+++.++++++. .++|+...+++|.. +.+.+.+|+.. +.+
T Consensus 348 ~~~~~~a~~~~~~---------~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l 418 (472)
T 1b37_A 348 TVTDEESRRIEQQ---------SDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQL 418 (472)
T ss_dssp EEEHHHHHHHHTS---------CHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHH
T ss_pred EechHHHHHHHhC---------CHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHH
Confidence 5544433322222 5688889999999988743 35788888899932 22223333321 122
Q ss_pred ecCCCCEEEeecCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 024990 220 WDVKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 220 ~~~~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..+.++|+|||+++. +++|+||++||++||++|++.+.
T Consensus 419 ~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~ 459 (472)
T 1b37_A 419 RAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQ 459 (472)
T ss_dssp HCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 345679999999985 56999999999999999998763
No 13
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.86 E-value=3.2e-20 Score=175.33 Aligned_cols=227 Identities=14% Similarity=0.157 Sum_probs=159.6
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC------CCccccccEEEecCCCCCCcchhhhcC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD------GQSLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~------G~~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
.|..++||++|+++|++++ +|++|++|++|++ ++++|+|++.+ |..+ +||+|||| +|...+.++..
T Consensus 393 ~~~~~gG~~~l~~~La~~l--~I~l~~~V~~I~~--~~~~v~V~~~~~~~~~~~~~~-~Ad~VI~t---vP~~vL~~l~~ 464 (662)
T 2z3y_A 393 HLTVRNGYSCVPVALAEGL--DIKLNTAVRQVRY--TASGCEVIAVNTRSTSQTFIY-KCDAVLCT---LPLGVLKQQPP 464 (662)
T ss_dssp CEEETTCTTHHHHHHTTTC--EEETTEEEEEEEE--ETTEEEEEEEESSCTTCEEEE-EESEEEEC---CCHHHHHCSSC
T ss_pred eeeecCcHHHHHHHHHhcC--ceecCCeEEEEEE--CCCcEEEEEeecccCCCCeEE-EeCEEEEC---CCHHHHhcccC
Confidence 4788999999999999976 6799999999998 67789998765 3343 89999999 99988776421
Q ss_pred C---CCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCC--ccceeecCC--CceEEEEecCCCCCCCCCCceEEE
Q 024990 78 R---PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDS--EVLSWAHCDSSKPGRSANSERWVL 150 (259)
Q Consensus 78 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~g~~~~~~--~~l~~~~~~~~k~~~~~~~~~~~~ 150 (259)
. .++ +++...++++.+.|.++.++++.|++++|..+ ..|+..+.. ....++++++.+ ...++.
T Consensus 465 ~i~f~P~----LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~~------~~vL~~ 534 (662)
T 2z3y_A 465 AVQFVPP----LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYK------APILLA 534 (662)
T ss_dssp SSEEESC----CCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCSS------SSEEEE
T ss_pred ceEEcCC----CCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeCCC------CCEEEE
Confidence 1 122 56667888999999999999999999988532 333332221 122345555431 235666
Q ss_pred EeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCCceEeEeeccccCCC------CCcCCCCC---ee
Q 024990 151 HSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAFPA------ASIAKEER---CL 219 (259)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~a~p~------~~~g~~~~---~~ 219 (259)
+.....+...... +++++.+.+++.|.++++. .++|....++||...... .++|.... .+
T Consensus 535 ~~~G~~a~~~~~l---------sdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l 605 (662)
T 2z3y_A 535 LVAGEAAGIMENI---------SDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLM 605 (662)
T ss_dssp EECTHHHHHHTTS---------CHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHH
T ss_pred EeccHhHHHHHhC---------CHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHH
Confidence 6665555543332 5688888888899887654 357999999999864211 12221100 01
Q ss_pred -------------ecCCCCEEEeecCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 024990 220 -------------WDVKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 220 -------------~~~~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..+.++|+|||+++. .++|+||++||++||++|++.+.
T Consensus 606 ~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~ 659 (662)
T 2z3y_A 606 AQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 659 (662)
T ss_dssp HCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred hCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHcc
Confidence 122378999999876 36999999999999999998763
No 14
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.84 E-value=5.2e-20 Score=177.10 Aligned_cols=225 Identities=14% Similarity=0.155 Sum_probs=159.6
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC------CCccccccEEEecCCCCCCcchhhhcC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD------GQSLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~------G~~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
.|..++||++|+++|++.+ +|++|++|++|++ ++++|+|++.+ |..+ .||+|||| +|...+.+++.
T Consensus 564 ~~~~~gG~~~L~~aLa~~l--~I~Lnt~V~~I~~--~~~gV~V~~~~~~~~~~g~~i-~AD~VIvT---vPl~vLk~l~~ 635 (852)
T 2xag_A 564 HLTVRNGYSCVPVALAEGL--DIKLNTAVRQVRY--TASGCEVIAVNTRSTSQTFIY-KCDAVLCT---LPLGVLKQQPP 635 (852)
T ss_dssp CEEETTCTTHHHHHHTTTC--CEECSEEEEEEEE--ETTEEEEEEEESSSTTCEEEE-EESEEEEC---CCHHHHHCSSC
T ss_pred eEEecCcHHHHHHHHHhCC--CEEeCCeEEEEEE--cCCcEEEEEeecccCCCCeEE-ECCEEEEC---CCHHHHHhhhc
Confidence 4688999999999999977 5699999999998 67789998754 3343 89999999 99988877432
Q ss_pred C---CCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCC--CccceeecC---CCceEEEEecCCCCCCCCCCceEE
Q 024990 78 R---PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQD---SEVLSWAHCDSSKPGRSANSERWV 149 (259)
Q Consensus 78 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~g~~~~~---~~~l~~~~~~~~k~~~~~~~~~~~ 149 (259)
. .++ +++...++++.+.|.++.++++.|++++|.. ...|+..+. ...+ ++++++.+ ...++
T Consensus 636 ~I~F~P~----LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l-~~~~~~~~------~pvLl 704 (852)
T 2xag_A 636 AVQFVPP----LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGEL-FLFWNLYK------APILL 704 (852)
T ss_dssp SSEEESC----CCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTT-CEEEECSS------SSEEE
T ss_pred ccccCCC----CCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCCCCce-EEEecCCC------CCEEE
Confidence 1 122 5566778899999999999999999998853 233433221 1122 34444431 13666
Q ss_pred EEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCCceEeEeeccccCC------CCCcCCCCCe---
Q 024990 150 LHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAFP------AASIAKEERC--- 218 (259)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~a~p------~~~~g~~~~~--- 218 (259)
.+.....+...... +++++.+.+++.|.++++. .++|..+.++||...-. ...+|.....
T Consensus 705 ~~v~G~~a~~l~~l---------sdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~ 775 (852)
T 2xag_A 705 ALVAGEAAGIMENI---------SDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDL 775 (852)
T ss_dssp EEECHHHHHHGGGS---------CHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHH
T ss_pred EEecCcCHHHHhcC---------CHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHH
Confidence 67766666543333 5788888888999887654 35799999999986321 1122221100
Q ss_pred -------------eecCCCCEEEeecCCC---CCChhHHHHHHHHHHHHHHhhh
Q 024990 219 -------------LWDVKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 219 -------------~~~~~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+....++|+|||+++. .++|+||++||++||++|+..+
T Consensus 776 L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l 829 (852)
T 2xag_A 776 MAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 829 (852)
T ss_dssp TTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 1123468999999875 4799999999999999999876
No 15
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.84 E-value=5.4e-21 Score=174.55 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=157.3
Q ss_pred ceecCCCchHHHHHHhcCC---C-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCC
Q 024990 4 KYVGVPGMNSICKALCHQP---G-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 79 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l---~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~ 79 (259)
.|..++||++|++.|++.+ + ++|+++++|.+|+. ++++|.|++.+|+.+ .+|+||+| +|++.+.+++..
T Consensus 247 ~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~vI~a---~~~~~l~~i~~~- 319 (495)
T 2vvm_A 247 SYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVN--ERDAARVTARDGREF-VAKRVVCT---IPLNVLSTIQFS- 319 (495)
T ss_dssp SEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEE--CSSSEEEEETTCCEE-EEEEEEEC---CCGGGGGGSEEE-
T ss_pred eEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEE--cCCEEEEEECCCCEE-EcCEEEEC---CCHHHHhheeeC-
Confidence 4678999999999998875 3 66999999999998 677899998888654 89999999 999998887633
Q ss_pred CCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHH
Q 024990 80 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYART 159 (259)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 159 (259)
++ +++...++++.+.|.++.++++.|+++++. ++.|+..++. .+.++..++..|+. ...++..... ..
T Consensus 320 p~----lp~~~~~ai~~~~~~~~~kv~l~~~~~~~~-~~~g~~~~~~-~~~~~~~~~~~~~~---~~vl~~~~~~-~~-- 387 (495)
T 2vvm_A 320 PA----LSTERISAMQAGHVSMCTKVHAEVDNKDMR-SWTGIAYPFN-KLCYAIGDGTTPAG---NTHLVCFGNS-AN-- 387 (495)
T ss_dssp SC----CCHHHHHHHHHCCCCCCEEEEEEESCGGGG-GEEEEECSSC-SSCEEEEEEECTTS---CEEEEEEECS-TT--
T ss_pred CC----CCHHHHHHHHhcCCCceeEEEEEECCccCC-CceeEecCCC-CcEEEecCCCCCCC---CeEEEEEeCc-cc--
Confidence 22 566778889999999999999999987652 4555444333 45555544433321 2344544432 11
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeecc---c---cCCCCCcCCC---CCeeecCCCCEEEee
Q 024990 160 VIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWG---S---AFPAASIAKE---ERCLWDVKRRLAICG 230 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~---~---a~p~~~~g~~---~~~~~~~~~~l~laG 230 (259)
.+. +++..+.+++.++++++...+|....+++|. | +.+.+.+|.. .+.+..+.++|+|||
T Consensus 388 ~~~-----------~~e~~~~~~~~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAG 456 (495)
T 2vvm_A 388 HIQ-----------PDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFAN 456 (495)
T ss_dssp CCC-----------TTTCHHHHHHHHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECC
T ss_pred cCC-----------CHHHHHHHHHHHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEec
Confidence 111 1223445567777776655678888899995 2 3333333321 112234567999999
Q ss_pred cCCC---CCChhHHHHHHHHHHHHHHhhhc
Q 024990 231 DFCV---SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 231 D~~~---g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
|++. .++||||++||++||++|++.+.
T Consensus 457 e~t~~~~~g~veGAi~SG~raA~~i~~~l~ 486 (495)
T 2vvm_A 457 SDWALGWRSFIDGAIEEGTRAARVVLEELG 486 (495)
T ss_dssp GGGCSSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhcCCceEEEhHHHHHHHHHHHHHHHhc
Confidence 9975 47899999999999999998774
No 16
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.84 E-value=3.6e-20 Score=165.73 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=146.1
Q ss_pred ceecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCC
Q 024990 4 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 80 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~ 80 (259)
.|.+.+||++|++.|++.+ +++|+++++|++|+. ++++| |++ +|+.+ .+|+||+| +|++.+.+|++..
T Consensus 181 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~v-V~~-~g~~~-~ad~Vv~a---~~~~~~~~ll~~~- 251 (421)
T 3nrn_A 181 PGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINI--EEKKV-YTR-DNEEY-SFDVAISN---VGVRETVKLIGRD- 251 (421)
T ss_dssp CEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEET--TTTEE-EET-TCCEE-ECSEEEEC---SCHHHHHHHHCGG-
T ss_pred cceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEE--ECCEE-EEe-CCcEE-EeCEEEEC---CCHHHHHHhcCcc-
Confidence 3678999999999998754 689999999999997 77788 754 56554 89999999 9999999999731
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCC-CCCCCCCc-eEEEEeCHHHHH
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK-PGRSANSE-RWVLHSTADYAR 158 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k-~~~~~~~~-~~~~~~~~~~~~ 158 (259)
.++++..+.+.+++|.+++++++.++++. .+..++++..+..+..+.+.+.+ |..+|.+. .+.++..
T Consensus 252 ----~~~~~~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~~~~~~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~----- 320 (421)
T 3nrn_A 252 ----YFDRDYLKQVDSIEPSEGIKFNLAVPGEP--RIGNTIVFTPGLMINGFNEPSALDKSLAREGYTLIMAHMA----- 320 (421)
T ss_dssp ----GSCHHHHHHHHTCCCCCEEEEEEEEESSC--SSCSSEEECTTSSSCEEECGGGTCGGGSCTTEEEEEEEEE-----
T ss_pred ----cCCHHHHHHHhCCCCCceEEEEEEEcCCc--ccCCeEEEcCCcceeeEeccCCCCCCcCCCCceEEEEEEe-----
Confidence 14556777889999999999999998863 23345555433224455555555 45555332 2333321
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCC-CCeeecCCCCEEEeecCCCCC-
Q 024990 159 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKE-ERCLWDVKRRLAICGDFCVSP- 236 (259)
Q Consensus 159 ~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~-~~~~~~~~~~l~laGD~~~g~- 236 (259)
... .+.++..+.+++++.++++ ......+++|+.+.|++..... ... ..+ ++|++||||+.++
T Consensus 321 --~~~--------~~~~~~~~~~~~~L~~~~p---~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~-~gl~laGd~~~~~~ 385 (421)
T 3nrn_A 321 --LKN--------GNVKKAIEKGWEELLEIFP---EGEPLLAQVYRDGNPVNRTRAGLHIE-WPL-NEVLVVGDGYRPPG 385 (421)
T ss_dssp --CTT--------CCHHHHHHHHHHHHHHHCT---TCEEEEEEEC-------------CCC-CCC-SSEEECSTTCCCTT
T ss_pred --ecc--------ccHHHHHHHHHHHHHHHcC---CCeEEEeeeccCCCCcccccCCCCCC-CCC-CcEEEECCcccCCC
Confidence 111 0223447888889988877 4456678999999998843221 111 455 8999999999988
Q ss_pred Ch--hHHHHHHHHHHHHH
Q 024990 237 NV--EGAILSGLDAASKL 252 (259)
Q Consensus 237 ~i--e~A~~SG~~aA~~l 252 (259)
++ |+|+.||++||++|
T Consensus 386 g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 386 GIEVDGIALGVMKALEKL 403 (421)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred ceeeehHHHHHHHHHHHh
Confidence 56 99999999999998
No 17
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.82 E-value=1.3e-19 Score=165.53 Aligned_cols=229 Identities=15% Similarity=0.108 Sum_probs=155.9
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCc---cccccEEEecCCCCCCcchhhhcCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS---LGQFNGVVASDKNVVSPRFRDVTGRPP 80 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~---~~~~d~VIla~~~~p~~~a~~ll~~~~ 80 (259)
.|...+||++|+++|++.++.+|++|++|.+|++ ++++|.|++.+|+. ...||+||+| +|...+..+... +
T Consensus 233 ~~~~~gG~~~l~~~l~~~l~~~i~~~~~V~~I~~--~~~~v~v~~~~~~~~~~~~~ad~vI~t---~p~~~~~~i~f~-p 306 (498)
T 2iid_A 233 FDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQ--NDQKVTVVYETLSKETPSVTADYVIVC---TTSRAVRLIKFN-P 306 (498)
T ss_dssp EEEETTCTTHHHHHHHHHTGGGEESSCEEEEEEE--CSSCEEEEEECSSSCCCEEEESEEEEC---SCHHHHTTSEEE-S
T ss_pred eEEeCCcHHHHHHHHHHhcccccccCCEEEEEEE--CCCeEEEEEecCCcccceEEeCEEEEC---CChHHHhheecC-C
Confidence 4577999999999999998778999999999998 77889998877753 1379999999 898877666432 2
Q ss_pred CCCCCcchhHHHHhccCCCcceeEEEEeccCCCCC-CCcc-ceeecCCCceEEEEecCCC-CCCCCCCceEEEEeCHHHH
Q 024990 81 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVK-GFSFQDSEVLSWAHCDSSK-PGRSANSERWVLHSTADYA 157 (259)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-g~~~~~~~~l~~~~~~~~k-~~~~~~~~~~~~~~~~~~~ 157 (259)
+ +++...++++.+.|.+..++++.|++++|. .... ++...+. ...++.+.+.. |.. ...++.+.....+
T Consensus 307 ~----Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~s~~~p~g---~~~L~~~~~g~~a 378 (498)
T 2iid_A 307 P----LLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDL-PSRFIYYPNHNFTNG---VGVIIAYGIGDDA 378 (498)
T ss_dssp C----CCHHHHHHHHHCCEECEEEEEEEESSCGGGGGTCCSSEEEESS-TTCEEECCSSCCTTS---CEEEEEEEEHHHH
T ss_pred C----CCHHHHHHHHhCCCcceeEEEEEeCCCCccCCCccCCcccCCC-CcceEEECCCCCCCC---CcEEEEEeCCccH
Confidence 2 667788899999999999999999998773 1222 2223222 22345544422 221 2344555444433
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCC-----CceEeEeeccccCCCCCcCCC---CC--------eeec
Q 024990 158 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPL-----PIFRKAHRWGSAFPAASIAKE---ER--------CLWD 221 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~-----p~~~~~~rW~~a~p~~~~g~~---~~--------~~~~ 221 (259)
...... +++++.+.+++.+.++++.... +....+++|... ++..|+- .+ .+..
T Consensus 379 ~~~~~~---------~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~~~~~~W~~~--p~~~G~~~~~~~~~~~~~~~~l~~ 447 (498)
T 2iid_A 379 NFFQAL---------DFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLD--KYAMGGITTFTPYQFQHFSDPLTA 447 (498)
T ss_dssp HTTTTS---------CHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGC--TTTCSSEECCCTTHHHHHHHHHHC
T ss_pred hhhhcC---------CHHHHHHHHHHHHHHHcCCChhhhhhhcCccEEEecCCC--CCCCceeeecCCcchHHHHHHHhC
Confidence 322222 5677888888888887542111 123667899862 2222221 01 1224
Q ss_pred CCCCEEEeecCCC--CCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~--g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+.++|+|||+++. .++|+||++||+++|++|+..++
T Consensus 448 p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~l~ 485 (498)
T 2iid_A 448 SQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASE 485 (498)
T ss_dssp CBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHHhc
Confidence 5679999999873 46899999999999999998763
No 18
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.81 E-value=1.9e-18 Score=165.07 Aligned_cols=227 Identities=15% Similarity=0.155 Sum_probs=158.8
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcC-CCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTG-RPPPL 82 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~-~~~~~ 82 (259)
.+...+||+.++++|++++ +|+++++|.+|++ ++++|+|++.+|+.+ .||+||+| +|...+..... ..++
T Consensus 526 ~~~~~~G~~~l~~aLa~gl--~I~l~t~V~~I~~--~~~~v~V~~~~G~~i-~Ad~VIvA---~P~~vL~~~~i~f~P~- 596 (776)
T 4gut_A 526 HTLLTPGYSVIIEKLAEGL--DIQLKSPVQCIDY--SGDEVQVTTTDGTGY-SAQKVLVT---VPLALLQKGAIQFNPP- 596 (776)
T ss_dssp EEECTTCTHHHHHHHHTTS--CEESSCCEEEEEC--SSSSEEEEETTCCEE-EESEEEEC---CCHHHHHTTCSEEESC-
T ss_pred eEEECChHHHHHHHHHhCC--cEEcCCeeEEEEE--cCCEEEEEECCCcEE-EcCEEEEC---CCHHHHhhcccccCCC-
Confidence 3567899999999999866 6799999999998 778899998888754 89999999 88877654211 1122
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCCC-----CccceeecC--CCceEEEEecCCCCCCCCCCceEEEEeCHH
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI-----PVKGFSFQD--SEVLSWAHCDSSKPGRSANSERWVLHSTAD 155 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~g~~~~~--~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~ 155 (259)
+++...++++.+.|.++.++.+.|++++|.. ++.|...+. ...+..++.+....+. ...++....+.
T Consensus 597 ---Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~---~~vL~~~i~G~ 670 (776)
T 4gut_A 597 ---LSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKK---HSVLMSVIAGE 670 (776)
T ss_dssp ---CCHHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSC---SCEEEEEECTH
T ss_pred ---CCHHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCCCCCC---ceEEEEEecch
Confidence 5667788899999999999999999998841 222222221 1123334445432221 23566666666
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCC--CCCCceEeEeeccccCCCC------CcCCCC---Ceee-cCC
Q 024990 156 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAFPAA------SIAKEE---RCLW-DVK 223 (259)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~--~~~p~~~~~~rW~~a~p~~------~~g~~~---~~~~-~~~ 223 (259)
.+...... +++++.+.+++.|.++++. .++|..+.+++|....... .+|... ..+. ...
T Consensus 671 ~a~~l~~l---------sdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~ 741 (776)
T 4gut_A 671 AVASVRTL---------DDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQ 741 (776)
T ss_dssp HHHHHHTS---------CHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBT
T ss_pred hHHHHHcC---------CHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCC
Confidence 55544333 5788999999999988764 4678999999998643221 111110 0111 235
Q ss_pred CCEEEeecCCC---CCChhHHHHHHHHHHHHHHh
Q 024990 224 RRLAICGDFCV---SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 224 ~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~ 254 (259)
++|+|||+++. .+.|+||++||+++|++|++
T Consensus 742 grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 742 GTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp TTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 79999999986 46899999999999999975
No 19
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=99.78 E-value=4.1e-19 Score=161.99 Aligned_cols=224 Identities=10% Similarity=0.073 Sum_probs=159.6
Q ss_pred ecCCCchHHHHHHhcCCCC-eeEcc--eEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGV-ESKFG--VGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~-~i~~~--~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
...+||++|+++|++.++. +|+++ ++|.+|+. ++++|++ .+|+.+ .||+||+| +|++++.+++....+
T Consensus 210 p~~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~--~~~~v~~--~~G~~~-~ad~VI~a---~p~~~~~~ll~~~~~- 280 (484)
T 4dsg_A 210 PQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDA--DAKTITF--SNGEVV-SYDYLIST---VPFDNLLRMTKGTGF- 280 (484)
T ss_dssp ESSSCTHHHHHHHHHHSCGGGEEECGGGCEEEEET--TTTEEEE--TTSCEE-ECSEEEEC---SCHHHHHHHEECSSC-
T ss_pred ecCCCHHHHHHHHHhhhhhCeEEECCCceeEEEEe--cCCEEEE--CCCCEE-ECCEEEEC---CCHHHHHHHhhccCC-
Confidence 3468999999999999975 78999 56999997 6667755 577654 89999999 999999999964110
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCC--CCccceeecCCC-ceEEEEecCCC-CCCCCCC-ceEEEEeCHHHH
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSE-VLSWAHCDSSK-PGRSANS-ERWVLHSTADYA 157 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~g~~~~~~~-~l~~~~~~~~k-~~~~~~~-~~~~~~~~~~~~ 157 (259)
..+++..+.+..+.|.++.++++.|+.+... .+..++++++.+ ...+++..+.+ |...+.+ ..+++..+..
T Consensus 281 --~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~-- 356 (484)
T 4dsg_A 281 --KGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES-- 356 (484)
T ss_dssp --TTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB--
T ss_pred --CCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC--
Confidence 1467788889999999999999999876321 345677776533 33456655555 5554432 2233333221
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCC-CCc-eEeEeeccccCCCCCcCCCCCe-----eecCCCCEEEee
Q 024990 158 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIP-LPI-FRKAHRWGSAFPAASIAKEERC-----LWDVKRRLAICG 230 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~-~p~-~~~~~rW~~a~p~~~~g~~~~~-----~~~~~~~l~laG 230 (259)
..... +++++++.+++++.+++...+ .++ ..+++||+++.|+|..++.... ..... +|+++|
T Consensus 357 -~~~~~---------~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~G 425 (484)
T 4dsg_A 357 -KYKPV---------NHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSR-CIYSRG 425 (484)
T ss_dssp -TTBCC---------CTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHT-TEEECS
T ss_pred -cCCcC---------CHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHhC-CcEeec
Confidence 11111 457888889999988754332 343 3578999999999998763211 11234 899999
Q ss_pred c---CCCCC-ChhHHHHHHHHHHHHHH
Q 024990 231 D---FCVSP-NVEGAILSGLDAASKLT 253 (259)
Q Consensus 231 D---~~~g~-~ie~A~~SG~~aA~~l~ 253 (259)
. |.++. ++++|+.||+.||+.|+
T Consensus 426 r~g~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 426 RFGAWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp TTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred CCcccccCCCChHHHHHHHHHHHHHHH
Confidence 7 77764 89999999999999998
No 20
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.69 E-value=1.1e-15 Score=140.15 Aligned_cols=229 Identities=13% Similarity=0.164 Sum_probs=142.1
Q ss_pred CCCchHHHHHHhcCCC-CeeEcceEEEEEEeecC-CCceEEEccCCCccccccEEEecCCCCCCcchhhhc---------
Q 024990 8 VPGMNSICKALCHQPG-VESKFGVGVGRFEWLED-KNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVT--------- 76 (259)
Q Consensus 8 ~~Gm~~l~~~La~~l~-~~i~~~~~V~~I~~~~~-~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll--------- 76 (259)
.+ |++|+++|++.++ .+|++|++|++|++ + +++|.|++.+|+.+ .||+||+| +|+..+...+
T Consensus 199 ~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~v~v~~~~g~~~-~ad~VI~t---~p~~~l~~~~~~~~~~~~~ 271 (516)
T 1rsg_A 199 LN-YDSVVQRIAQSFPQNWLKLSCEVKSITR--EPSKNVTVNCEDGTVY-NADYVIIT---VPQSVLNLSVQPEKNLRGR 271 (516)
T ss_dssp SC-HHHHHHHHHTTSCGGGEETTCCEEEEEE--CTTSCEEEEETTSCEE-EEEEEEEC---CCHHHHHGGGSSCSCSTTC
T ss_pred hC-HHHHHHHHHHhCCCCEEEECCEEEEEEE--cCCCeEEEEECCCcEE-ECCEEEEC---CCHHHhhhccccccccccc
Confidence 44 9999999999986 57999999999997 4 56799999898754 89999999 8887764321
Q ss_pred -CCCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceee-cCCC-ceE-----------------------
Q 024990 77 -GRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSF-QDSE-VLS----------------------- 130 (259)
Q Consensus 77 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~-~~~~-~l~----------------------- 130 (259)
.-.++ +++...++++.+.|.++.++++.|++++|..+..++.. .... .+.
T Consensus 272 i~f~P~----Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (516)
T 1rsg_A 272 IEFQPP----LKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQK 347 (516)
T ss_dssp CEEESC----CCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCSEEEECCCCCHHHHHHHHHCCSHHHHHHHC-------
T ss_pred eEecCC----CCHHHHHHHHhCCCCcceEEEEEeCCCCCCCCCCcEEEeCCCCccchhhcccCcccchhhhccccccccc
Confidence 11122 56778889999999999999999999988533222221 1100 000
Q ss_pred ------E----EEecCCCCCCCCCCceEEEEeCHHHHHHHHhhcCCCCCchhhHHHHHH---HHHHHHHhcCC------C
Q 024990 131 ------W----AHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAE---EMFQEFQGTGL------S 191 (259)
Q Consensus 131 ------~----~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~---~l~~~~~~~~~------~ 191 (259)
| .+.+...+ .+...++.......+...-... .+++++.+ .+++.+.++++ .
T Consensus 348 ~~~~~~~~~~~~~~~~~~~---~~~~~L~~~~~g~~a~~~~~l~-------~~~~~~~~~~~~~l~~l~~~~g~~~~~~~ 417 (516)
T 1rsg_A 348 HTSVTCWSQPLFFVNLSKS---TGVASFMMLMQAPLTNHIESIR-------EDKERLFSFFQPVLNKIMKCLDSEDVIDG 417 (516)
T ss_dssp --CCCTTSSCEEEEEHHHH---TSCSEEEEEECBTHHHHHHHTT-------TCHHHHHHHHHHHHHHHHHHTTCCCCEEC
T ss_pred ccccccccCceeEEEeeec---CCCcEEEEEecchHHHHHHhcC-------CCHHHHHHHHHHHHHHHHhhccccccccC
Confidence 0 00000010 1123556666555544321110 02345443 34555554332 2
Q ss_pred CC---------CCc--eEeEeeccccCCC------CCcCCCCCe----ee-cCCCCEEEeecCCC---CCChhHHHHHHH
Q 024990 192 IP---------LPI--FRKAHRWGSAFPA------ASIAKEERC----LW-DVKRRLAICGDFCV---SPNVEGAILSGL 246 (259)
Q Consensus 192 ~~---------~p~--~~~~~rW~~a~p~------~~~g~~~~~----~~-~~~~~l~laGD~~~---g~~ie~A~~SG~ 246 (259)
.+ .|. ...+++|...... ..+|..... +. ...++|+|||+.+. .++|+||++||+
T Consensus 418 ~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~~~~rl~FAGe~ts~~~~g~v~GA~~SG~ 497 (516)
T 1rsg_A 418 MRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGR 497 (516)
T ss_dssp CC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC----CHHHHHHHHCSSSSEEECSTTSCSTTBTSHHHHHHHHH
T ss_pred CCCcccccccCCCccceEEEecCCCCCCCCccCCCcCCCCCHHHHHHHhccCCCCcEEEeccccccCCCccchhHHHHHH
Confidence 21 154 6778899643211 112211111 11 35679999999873 479999999999
Q ss_pred HHHHHHHhhhc
Q 024990 247 DAASKLTEILS 257 (259)
Q Consensus 247 ~aA~~l~~~l~ 257 (259)
++|++|++.+.
T Consensus 498 raA~~i~~~~~ 508 (516)
T 1rsg_A 498 REATRISDLLK 508 (516)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 21
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=99.66 E-value=8.9e-17 Score=146.80 Aligned_cols=224 Identities=10% Similarity=0.131 Sum_probs=146.2
Q ss_pred eecCCCchHHHHHHhcCCC---CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCC
Q 024990 5 YVGVPGMNSICKALCHQPG---VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPP 81 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~l~---~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~ 81 (259)
|..++||++|+++|++.+. ++|+++++|.+|.. ++++ +++.+|+.+ .||+||+| +|.+.+.+++..
T Consensus 215 ~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~--~~~~--v~~~~G~~~-~ad~vI~t---~P~~~l~~~l~~--- 283 (513)
T 4gde_A 215 FPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNA--NNKT--VTLQDGTTI-GYKKLVST---MAVDFLAEAMND--- 283 (513)
T ss_dssp EESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEET--TTTE--EEETTSCEE-EEEEEEEC---SCHHHHHHHTTC---
T ss_pred ecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEc--cCCE--EEEcCCCEE-ECCEEEEC---CCHHHHHHhcCc---
Confidence 4457999999999998874 68999999999997 5544 456688764 89999999 999999999864
Q ss_pred CCCCcchhHHHHhccCCCcceeEEEEeccCCCCC--CCccceeecCCC-ceEEEE---------------------e-cC
Q 024990 82 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSE-VLSWAH---------------------C-DS 136 (259)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~g~~~~~~~-~l~~~~---------------------~-~~ 136 (259)
+........++|.++.++.+.++..... .+...+++++.. ...++. + ++
T Consensus 284 ------~~~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~ 357 (513)
T 4gde_A 284 ------QELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADG 357 (513)
T ss_dssp ------HHHHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTS
T ss_pred ------hhhHhhhhcccCCceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccC
Confidence 4556677889999999999998764321 122223332211 111121 1 11
Q ss_pred CCCCCCCCC-ceEEEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCC--CCCceEeEeeccccCCCCCcC
Q 024990 137 SKPGRSANS-ERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIA 213 (259)
Q Consensus 137 ~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~--~~p~~~~~~rW~~a~p~~~~g 213 (259)
..+.+.+.. ..+.............. .+++++++.+++++.++++.. ++++..+++||++|.|+|..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~ 428 (513)
T 4gde_A 358 SRPQSTEAKEGPYWSIMLEVSESSMKP---------VNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLE 428 (513)
T ss_dssp CCCSCCSEECCCEEEEEEEEEEBTTBC---------CCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTT
T ss_pred CCcccccCCcceEEEEEecccchhccC---------CCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHh
Confidence 112222110 11111111000001111 256788888899998875543 345678899999999999887
Q ss_pred CCCCe--ee--cCCCCEEEee---cCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 214 KEERC--LW--DVKRRLAICG---DFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 214 ~~~~~--~~--~~~~~l~laG---D~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+.... +. -...+|++|| .|-+. ++++.|+.||+.||+.|++
T Consensus 429 ~~~~~~~~~~~l~~~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 429 REGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp HHHHHHHHHHHHHHTTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence 63211 10 1125899999 55443 5899999999999999986
No 22
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.66 E-value=2e-15 Score=135.06 Aligned_cols=212 Identities=13% Similarity=0.124 Sum_probs=138.2
Q ss_pred ecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLT 85 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~ 85 (259)
...+||+.+++++++.++ +|++|++|++|++ ++++++|++.+|+.+ .+|+||+| +|.+.+..+... ++
T Consensus 201 ~~~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~vi~a---~~~~~l~~i~~~-p~---- 268 (431)
T 3k7m_X 201 VFSNGSADLVDAMSQEIP-EIRLQTVVTGIDQ--SGDVVNVTVKDGHAF-QAHSVIVA---TPMNTWRRIVFT-PA---- 268 (431)
T ss_dssp EETTCTHHHHHHHHTTCS-CEESSCCEEEEEC--SSSSEEEEETTSCCE-EEEEEEEC---SCGGGGGGSEEE-SC----
T ss_pred hcCCcHHHHHHHHHhhCC-ceEeCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEe---cCcchHhheeeC-CC----
Confidence 458999999999999998 9999999999998 777899998888754 89999999 898888776533 22
Q ss_pred cchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHhhcC
Q 024990 86 FAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTG 165 (259)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
+++...+++..+.|....++.+.|+++++ +++...+.....+. ++... . .+...++....... .+.
T Consensus 269 l~~~~~~~~~~~~~~~~~kv~~~~~~~~~-----~i~~~~d~~~~~~~-~~~~~-~-~~~~~l~~~~~g~~----~~~-- 334 (431)
T 3k7m_X 269 LPERRRSVIEEGHGGQGLKILIHVRGAEA-----GIECVGDGIFPTLY-DYCEV-S-ESERLLVAFTDSGS----FDP-- 334 (431)
T ss_dssp CCHHHHHHHHHCCCCCEEEEEEEEESCCT-----TEEEEBSSSSSEEE-EEEEC-S-SSEEEEEEEEETTT----CCT--
T ss_pred CCHHHHHHHHhCCCcceEEEEEEECCCCc-----CceEcCCCCEEEEE-eCcCC-C-CCCeEEEEEecccc----CCC--
Confidence 55666777888889999999999988753 22211222121121 11111 0 11223444433221 111
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCC------CCCcCCC---CCeeecCCCCEEEeecCCC--
Q 024990 166 LQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFP------AASIAKE---ERCLWDVKRRLAICGDFCV-- 234 (259)
Q Consensus 166 ~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p------~~~~g~~---~~~~~~~~~~l~laGD~~~-- 234 (259)
.+.+. +.+.++++++... |.....++|..... ..++|.. .+.+..+.++|+|||+.+.
T Consensus 335 ------~~~~~----~~~~l~~~~~~~~-~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~ 403 (431)
T 3k7m_X 335 ------TDIGA----VKDAVLYYLPEVE-VLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLE 403 (431)
T ss_dssp ------TCHHH----HHHHHHHHCTTCE-EEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSS
T ss_pred ------CCHHH----HHHHHHHhcCCCC-ccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhcc
Confidence 12333 3344555555433 67777899975221 1222321 1233456789999995432
Q ss_pred -CCChhHHHHHHHHHHHHHHh
Q 024990 235 -SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 235 -g~~ie~A~~SG~~aA~~l~~ 254 (259)
.+.|+||++||++||++|+-
T Consensus 404 ~~g~~~GA~~sg~raa~~i~~ 424 (431)
T 3k7m_X 404 FPGYIEGALETAECAVNAILH 424 (431)
T ss_dssp STTSHHHHHHHHHHHHHHHHH
T ss_pred CCeEehHHHHHHHHHHHHHHh
Confidence 46899999999999999975
No 23
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=99.62 E-value=1.8e-15 Score=137.95 Aligned_cols=234 Identities=13% Similarity=0.127 Sum_probs=114.4
Q ss_pred eecCCCchHHHHHHhcC---CCCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEecCCCCCCcchhh-hcCCC
Q 024990 5 YVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRP 79 (259)
Q Consensus 5 ~~~~~Gm~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla~~~~p~~~a~~-ll~~~ 79 (259)
|.+++||++|+++|++. .|++|++|++|++|.. ++++++ |+++||+++ .||+||++ ++++.+.. |++.
T Consensus 214 ~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~--~~~~~~gV~~~~g~~~-~ad~VV~~---a~~~~~~~~Ll~~- 286 (501)
T 4dgk_A 214 WFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMET--TGNKIEAVHLEDGRRF-LTQAVASN---ADVVHTYRDLLSQ- 286 (501)
T ss_dssp EEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEE--ETTEEEEEEETTSCEE-ECSCEEEC---CC------------
T ss_pred EEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEe--eCCeEEEEEecCCcEE-EcCEEEEC---CCHHHHHHHhccc-
Confidence 67899999999999875 5789999999999998 667775 788899875 89999999 77776554 5543
Q ss_pred CCCCCCcchhHHHHhccCCCc-ceeEEEEeccCCCCCCCccceeecCC----------------CceEEEEecCCC-CCC
Q 024990 80 PPLDLTFAPDLAVKLEEIPVN-PCFALMLAFSEPLSSIPVKGFSFQDS----------------EVLSWAHCDSSK-PGR 141 (259)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~g~~~~~~----------------~~l~~~~~~~~k-~~~ 141 (259)
.+ ......+.++..++. +.+++++.++.+...++...+.+..+ ....++...+.. |..
T Consensus 287 ~~----~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ 362 (501)
T 4dgk_A 287 HP----AAVKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSL 362 (501)
T ss_dssp --------------------CCEEEEEEEEESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGG
T ss_pred cc----cchhhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCc
Confidence 22 233444556666665 56777888877543222222222110 011123322222 333
Q ss_pred CCCC-ceEEEEeC-HHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhc-CCCCCC-CceEeE---eeccccCCCC----
Q 024990 142 SANS-ERWVLHST-ADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGT-GLSIPL-PIFRKA---HRWGSAFPAA---- 210 (259)
Q Consensus 142 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~-~~~~~~-p~~~~~---~rW~~a~p~~---- 210 (259)
+|.+ ..+.+... +.......+. +...+++.+.+++.+.+. .+.+.+ .+...+ ..|..-...+
T Consensus 363 ap~G~~~~~~~~~~p~~~~~~~~~-------~~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~ 435 (501)
T 4dgk_A 363 APEGCGSYYVLAPVPHLGTANLDW-------TVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSA 435 (501)
T ss_dssp SSTTCEEEEEEEEECCTTTSCCCH-------HHHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC----------
T ss_pred CCCCCceEEEEEecCccccccccH-------HHHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccc
Confidence 3322 23333221 1100000001 113466677777777653 343221 122211 1122111110
Q ss_pred -CcCC-------CCCee-ecCCCCEEEeecCCC-CCChhHHHHHHHHHHHHHHhhh
Q 024990 211 -SIAK-------EERCL-WDVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 211 -~~g~-------~~~~~-~~~~~~l~laGD~~~-g~~ie~A~~SG~~aA~~l~~~l 256 (259)
...+ .++.. .++-++||+||||+. |++|++|+.||+.||++|++.|
T Consensus 436 ~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL 491 (501)
T 4dgk_A 436 FSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDL 491 (501)
T ss_dssp --------------------CCTTEEECCCH------HHHHHHHHHHHHHHHHHHH
T ss_pred cChhcchhhccccCCCCCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 0000 01111 245679999999986 6789999999999999999987
No 24
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.62 E-value=3.3e-16 Score=139.98 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=132.4
Q ss_pred ceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCC
Q 024990 4 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 83 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~ 83 (259)
.|...+||++++++|++.++.+|+++++|.+|+. ++++|.|++.+|+ + .||+||+| +|++++.++++.
T Consensus 198 ~~~~~~g~~~l~~~l~~~l~~~v~~~~~V~~i~~--~~~~v~v~~~~g~-~-~ad~Vv~a---~~~~~~~~~l~~----- 265 (424)
T 2b9w_A 198 LWTWADGTQAMFEHLNATLEHPAERNVDITRITR--EDGKVHIHTTDWD-R-ESDVLVLT---VPLEKFLDYSDA----- 265 (424)
T ss_dssp CBCCTTCHHHHHHHHHHHSSSCCBCSCCEEEEEC--CTTCEEEEESSCE-E-EESEEEEC---SCHHHHTTSBCC-----
T ss_pred eEEeCChHHHHHHHHHHhhcceEEcCCEEEEEEE--ECCEEEEEECCCe-E-EcCEEEEC---CCHHHHhhccCC-----
Confidence 4567899999999999999888899999999998 6778999888885 3 89999999 999988777653
Q ss_pred CCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCC---CceEE-EEecCCCCCCCCCCceEEEEeCHHHHHH
Q 024990 84 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS---EVLSW-AHCDSSKPGRSANSERWVLHSTADYART 159 (259)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~---~~l~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 159 (259)
.+...+.+.++.|.+..+. +.+...++ .+.+ +++.. ....| ++++...+.. + ...++.+..... ..
T Consensus 266 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~l~~~~~~~~-~~ 335 (424)
T 2b9w_A 266 ---DDDEREYFSKIIHQQYMVD-ACLVKEYP--TISG-YVPDNMRPERLGHVMVYYHRWADD-P-HQIITTYLLRNH-PD 335 (424)
T ss_dssp ---CHHHHHHHTTCEEEEEEEE-EEEESSCC--SSEE-ECGGGGSGGGTTSCCEEEECCTTC-T-TSCEEEEEECCB-TT
T ss_pred ---CHHHHHHHhcCCcceeEEE-EEEeccCC--cccc-cccCCCCCcCCCcceEEeeecCCC-C-ceEEEEEeccCC-Cc
Confidence 3444556778887764432 22322221 1222 22221 01111 2222222221 1 123333322111 11
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCC-----CCcCCCCCe-eecCCCCEEEeecCC
Q 024990 160 VIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPA-----ASIAKEERC-LWDVKRRLAICGDFC 233 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~-----~~~g~~~~~-~~~~~~~l~laGD~~ 233 (259)
..+ .+++++.+.+++.+.+++.. .+......+|.+ .|. +..|+.++. .....+++++||+|+
T Consensus 336 ~~~---------~~~~~~~~~v~~~l~~l~~~--~~~~~~~~~w~~-~p~~~~~~~~~G~~~~~~~~~~~~~l~~aG~~~ 403 (424)
T 2b9w_A 336 YAD---------KTQEECRQMVLDDMETFGHP--VEKIIEEQTWYY-FPHVSSEDYKAGWYEKVEGMQGRRNTFYAGEIM 403 (424)
T ss_dssp BCC---------CCHHHHHHHHHHHHHHTTCC--EEEEEEEEEEEE-EEECCHHHHHTTHHHHHHHTTTGGGEEECSGGG
T ss_pred ccc---------cChHHHHHHHHHHHHHcCCc--ccccccccceee-eeccCHHHHhccHHHHHHHHhCCCCceEecccc
Confidence 111 14678888888888875432 222233456753 332 212211100 012346899999999
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 024990 234 VSPNVEGAILSGLDAASKLT 253 (259)
Q Consensus 234 ~g~~ie~A~~SG~~aA~~l~ 253 (259)
..+.+|+|++||+++|++|+
T Consensus 404 ~~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 404 SFGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp SCSSHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999875
No 25
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.50 E-value=1e-13 Score=130.67 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=142.8
Q ss_pred cceecCCCchHHHHHHhcCC--CCeeEcceEEE--EEEeecCCCc-------eEE-EccCCC--ccccccEEEecCCCCC
Q 024990 3 KKYVGVPGMNSICKALCHQP--GVESKFGVGVG--RFEWLEDKNL-------WSV-SGLDGQ--SLGQFNGVVASDKNVV 68 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l--~~~i~~~~~V~--~I~~~~~~~~-------~~v-~~~~G~--~~~~~d~VIla~~~~p 68 (259)
+-|...+||+.|+++|++.+ +..|+++++|+ +|++ ++++ ++| .+.+|+ . ..||+||+| +|
T Consensus 338 ~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~~I~~--~~~g~~~~~~~V~V~~~~~G~~~~-~~aD~VIvT---vP 411 (721)
T 3ayj_A 338 EYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVAN--ACHSGTASARAQLLSYDSHNAVHS-EAYDFVILA---VP 411 (721)
T ss_dssp EECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECEEEEE--EEECSSSSCCEEEEEEETTCCEEE-EEESEEEEC---SC
T ss_pred ceeEECCcHHHHHHHHHHhcccCCceEeCCEEEeeeEEE--CCCCCccccceEEEEEecCCceEE-EEcCEEEEC---CC
Confidence 34678999999999999997 56789999999 9997 3334 888 445665 3 389999999 89
Q ss_pred Ccchhhhc-----C-------C--------------CCCCCCCc-c-------hhHHHHhccCCCcceeEEEEec-----
Q 024990 69 SPRFRDVT-----G-------R--------------PPPLDLTF-A-------PDLAVKLEEIPVNPCFALMLAF----- 109 (259)
Q Consensus 69 ~~~a~~ll-----~-------~--------------~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~l~~----- 109 (259)
.+.+..++ . . .+|+ + + +...++++++.|.+..++.+.|
T Consensus 412 ~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ppl---Llp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~ 488 (721)
T 3ayj_A 412 HDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPL---LLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAAL 488 (721)
T ss_dssp HHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSS---CCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGG
T ss_pred HHHHhhccccccccccccccccccccccccccccccCCcc---cCCcccccccHHHHHHHHhcCcccceEEEEEEccccC
Confidence 88774311 1 0 0121 2 4 5778899999999999999999
Q ss_pred cCCCCCCC---ccceeecCCCce-EEEEecCC--CCCCCCCCceEE-EEeCHHHHHHHHhh---cCCCCCch--hhHHHH
Q 024990 110 SEPLSSIP---VKGFSFQDSEVL-SWAHCDSS--KPGRSANSERWV-LHSTADYARTVIAQ---TGLQKPSE--ATLKKV 177 (259)
Q Consensus 110 ~~~~~~~~---~~g~~~~~~~~l-~~~~~~~~--k~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~--~~~e~v 177 (259)
++++|... ..+..+.+.+.. .+++...+ ..+... ...+. .++...-+...... ..+. +.+ ...+.+
T Consensus 489 ~~~fW~~~~g~~i~~s~TD~~~r~~~~~p~p~~~d~~~~~-~gvlL~sYtwg~dA~~~~~~~g~~~~~-~~er~~~~~~~ 566 (721)
T 3ayj_A 489 DQPWVPQWRGEPIKAVVSDSGLAASYVVPSPIVEDGQAPE-YSSLLASYTWEDDSTRLRHDFGLYPQN-PATETGTADGM 566 (721)
T ss_dssp GSTTSCEETTEECCEEEETTTTEEEEEEECSCC----CCS-EEEEEEEEEETHHHHHHHTTCCSSSEE-SSSSSCCCHHH
T ss_pred CCCcccccCCCCceeeecCCCcceEEEeccCcccccCCCC-CcEEEEEEeCccchhhhhccccccCCC-hHHhhhhhhHH
Confidence 88888421 112233443332 12221000 001111 11222 23322223333100 1010 100 012344
Q ss_pred HHHHHHHHH--hcCCCCC--------------CCceEeEeeccccCCCCCcCC-----CC--------Ce-----eecCC
Q 024990 178 AEEMFQEFQ--GTGLSIP--------------LPIFRKAHRWGSAFPAASIAK-----EE--------RC-----LWDVK 223 (259)
Q Consensus 178 ~~~l~~~~~--~~~~~~~--------------~p~~~~~~rW~~a~p~~~~g~-----~~--------~~-----~~~~~ 223 (259)
.+.+++.+. .+.+... .+.....+.|...- ...+. .+ .+ +..+.
T Consensus 567 ~~~~l~~la~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp--s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~ 644 (721)
T 3ayj_A 567 YRTMVNRAYRYVKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNK--TAGGFKLDMTGDHHQSNLCFRYHTHALAASLD 644 (721)
T ss_dssp HHHHHHHTCCEECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGST--TSSSEECCBTTTHHHHHHHHHGGGGGGCTTTC
T ss_pred HHHHHHHHhhhccCccccccccchhhhhhhhcccCceEEEeCCCCC--CCCccccCCCccchhhhhhhhhhhhccccCCC
Confidence 677777777 5554322 13445789996533 21110 11 00 11246
Q ss_pred CCEEEeecCCC--CCChhHHHHHHHHHHHHHHhhhc
Q 024990 224 RRLAICGDFCV--SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 224 ~~l~laGD~~~--g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
++|+||||.+. ++.+|||++||.+||..|...+.
T Consensus 645 gri~fAGe~~S~~~GWieGAl~Sa~~Aa~~i~~~~~ 680 (721)
T 3ayj_A 645 NRFFIASDSYSHLGGWLEGAFMSALNAVAGLIVRAN 680 (721)
T ss_dssp CCEEECSGGGSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEeehhhccCCceehHHHHHHHHHHHHHHHHhc
Confidence 89999999764 56899999999999999988764
No 26
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.39 E-value=3e-10 Score=93.14 Aligned_cols=227 Identities=33% Similarity=0.609 Sum_probs=125.3
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCC
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 82 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~ 82 (259)
.++....++............. ........... ..+.+.+....+........++++ .........+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---- 169 (336)
T 3kkj_A 101 VRWVGKPGMSAITRAMRGDMPV--SFSCRITEVFR--GEEHWNLLDAEGQNHGPFSHVIIA---TPAPQASTLLAA---- 169 (336)
T ss_dssp CEEEESSSTHHHHHHHHTTCCE--ECSCCEEEEEE--CSSCEEEEETTSCEEEEESCEEEC---SCHHHHGGGGTT----
T ss_pred ceeecccccccchhccccccee--ecceeeccccc--ccccccccccccccccccccceec---cccchhhhhhcc----
Confidence 3456667777777777765544 56666666655 455566655555432234444444 333333333222
Q ss_pred CCCcchhHHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHh
Q 024990 83 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIA 162 (259)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
............+.........+...... ......... ....+...............................
T Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (336)
T 3kkj_A 170 ----APKLASVVAGVKMDPTWAVALAFETPLQT-PMQGCFVQD-SPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLD 243 (336)
T ss_dssp ----CHHHHHHHTTCCEEEEEEEEEEESSCCSC-CCCEEEECS-SSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTT
T ss_pred ----cccccccccccccccchhhhhcccccccc-ccccccccc-cccccccccccccccccccccceecccccccccccc
Confidence 22223333334444444444444443321 111111111 122222222222222211223344455444443332
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHhc-CCCCCCCceEeEeeccccCCCCCcCCCCCeeecCCCCEEEeecCCCCCChhHH
Q 024990 163 QTGLQKPSEATLKKVAEEMFQEFQGT-GLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGA 241 (259)
Q Consensus 163 ~~~~~~~~~~~~e~v~~~l~~~~~~~-~~~~~~p~~~~~~rW~~a~p~~~~g~~~~~~~~~~~~l~laGD~~~g~~ie~A 241 (259)
. ......+.....+... ....+.+.....+||+|+.|.... ..+..++..++|++|||++.|+++++|
T Consensus 244 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~a~~~~~~--~~~~~~~~~~~v~l~GDa~~g~gv~~A 312 (336)
T 3kkj_A 244 A---------SREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAH--EWGALSDADLGIYVCGDWCLSGRVEGA 312 (336)
T ss_dssp S---------CHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEEEEESSCC--CCSSEEETTTTEEECCGGGTTSSHHHH
T ss_pred c---------cchhhhhhhhhhhhhhccCCcCcchheeccceeeccccccc--CccceeeCCCCEEEEecccCCcCHHHH
Confidence 2 2334444555555544 334567899999999999987654 245566778899999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 024990 242 ILSGLDAASKLTEILS 257 (259)
Q Consensus 242 ~~SG~~aA~~l~~~l~ 257 (259)
+.||+.||++|++.|+
T Consensus 313 ~~sG~~aA~~I~~~L~ 328 (336)
T 3kkj_A 313 WLSGQEAARRLLEHLQ 328 (336)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999885
No 27
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=98.88 E-value=2.7e-09 Score=94.22 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=57.0
Q ss_pred ecCCCchHHHHHHhcCCCCeeEcceEEE-EEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGVESKFGVGVG-RFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDL 84 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~~i~~~~~V~-~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~ 84 (259)
.+++|+++|+++|++..+.+|++|++|. +|.. .||+||+| +|++++.+++
T Consensus 193 ~p~gG~~~l~~~l~~~~g~~I~l~~~V~~~i~~------------------~~d~VI~a---~p~~~~~~~~-------- 243 (384)
T 2bi7_A 193 MPKCGYTQMIKSILNHENIKVDLQREFIVEERT------------------HYDHVFYS---GPLDAFYGYQ-------- 243 (384)
T ss_dssp EETTHHHHHHHHHHCSTTEEEEESCCCCGGGGG------------------GSSEEEEC---SCHHHHTTTT--------
T ss_pred EECcCHHHHHHHHHhcCCCEEEECCeeehhhhc------------------cCCEEEEc---CCHHHHHHhh--------
Confidence 8899999999999998888999999998 7752 28999999 9999876652
Q ss_pred CcchhHHHHhccCCCcceeEEEEecc
Q 024990 85 TFAPDLAVKLEEIPVNPCFALMLAFS 110 (259)
Q Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~l~~~ 110 (259)
+.+++|.++..+.+.++
T Consensus 244 ---------lg~l~y~s~~~v~~~~d 260 (384)
T 2bi7_A 244 ---------YGRLGYRTLDFKKFTYQ 260 (384)
T ss_dssp ---------TCCCCEEEEEEEEEEEE
T ss_pred ---------cCCCCcceEEEEEEEeC
Confidence 34589999998888887
No 28
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.5e-09 Score=96.29 Aligned_cols=75 Identities=8% Similarity=-0.048 Sum_probs=60.4
Q ss_pred ecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLT 85 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~ 85 (259)
.+++||++|+++|++.++.+|++|++|.+|+. . | + .+..||+||+| +|++++.++.
T Consensus 199 ~p~gG~~~l~~~l~~~~g~~I~l~~~V~~I~~--~---v-----~--~~~~aD~VI~t---~p~~~l~~~~--------- 254 (399)
T 1v0j_A 199 LPTDGYTAWLQNMAADHRIEVRLNTDWFDVRG--Q---L-----R--PGSPAAPVVYT---GPLDRYFDYA--------- 254 (399)
T ss_dssp CBTTHHHHHHHHHTCSTTEEEECSCCHHHHHH--H---H-----T--TTSTTCCEEEC---SCHHHHTTTT---------
T ss_pred cccccHHHHHHHHHhcCCeEEEECCchhhhhh--h---h-----h--hcccCCEEEEC---CcHHHHHhhh---------
Confidence 78999999999999999999999999999975 2 3 1 21269999999 9998866542
Q ss_pred cchhHHHHhccCCCcceeEEEEeccCC
Q 024990 86 FAPDLAVKLEEIPVNPCFALMLAFSEP 112 (259)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~~~~l~~~~~ 112 (259)
+.+++|.++..+.+.++.+
T Consensus 255 --------l~~l~y~s~~~~~~~~~~~ 273 (399)
T 1v0j_A 255 --------EGRLGWRTLDFEVEVLPIG 273 (399)
T ss_dssp --------TCCCCEEEEEEEEEEESSS
T ss_pred --------hCCCCcceEEEEEEEEccc
Confidence 3458899988888888654
No 29
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=98.82 E-value=5.2e-09 Score=91.83 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=57.9
Q ss_pred ecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLT 85 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~ 85 (259)
.+++|+++|+++|++ +++|++|++|.+|+. +| . ..||+||+| +|++++..+.
T Consensus 189 ~p~gG~~~l~~~l~~--g~~i~l~~~V~~i~~-----~v--------~-~~~D~VV~a---~p~~~~~~~~--------- 240 (367)
T 1i8t_A 189 IPVGGYTKLIEKMLE--GVDVKLGIDFLKDKD-----SL--------A-SKAHRIIYT---GPIDQYFDYR--------- 240 (367)
T ss_dssp CBTTCHHHHHHHHHT--TSEEECSCCGGGSHH-----HH--------H-TTEEEEEEC---SCHHHHTTTT---------
T ss_pred ccCCCHHHHHHHHhc--CCEEEeCCceeeech-----hh--------h-ccCCEEEEe---ccHHHHHHHh---------
Confidence 789999999999998 478999999999864 23 1 279999999 9998765431
Q ss_pred cchhHHHHhccCCCcceeEEEEeccCC
Q 024990 86 FAPDLAVKLEEIPVNPCFALMLAFSEP 112 (259)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~~~~l~~~~~ 112 (259)
+.+++|.++..+.+.++.+
T Consensus 241 --------l~~l~y~s~~~v~~~~d~~ 259 (367)
T 1i8t_A 241 --------FGALEYRSLKFETERHEFP 259 (367)
T ss_dssp --------TCCCCEEEEEEEEEEESSS
T ss_pred --------hCCCCCceEEEEEEEeccc
Confidence 4558999999999998865
No 30
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.64 E-value=2.6e-08 Score=78.74 Aligned_cols=121 Identities=12% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHhcC-CCCCCCc-eE--eEee
Q 024990 127 EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTG-LSIPLPI-FR--KAHR 202 (259)
Q Consensus 127 ~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~l~~~~~~~~-~~~~~p~-~~--~~~r 202 (259)
.++.++...+...........++.+.....+...... +++++.+.+++.|.+++ +.. .+. .. ..++
T Consensus 18 ~pi~~i~d~S~~~~~~g~~~~L~~~~~g~~A~~~~~l---------~~~e~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~ 87 (181)
T 2e1m_C 18 NPNRFMYYPSHPVPGTQGGVVLAAYSWSDDAARWDSF---------DDAERYGYALENLQSVHGRRI-EVFYTGAGQTQS 87 (181)
T ss_dssp STTBEEECCSSCCTTCSCEEEEEEEEEHHHHHHHTTS---------CTTTTHHHHHHHHHHHHCGGG-GGTEEEEEEEEE
T ss_pred CCeEEEEECCCCcCCCCCCEEEEEEcCChHHHHHHcC---------CHHHHHHHHHHHHHHHhCCCc-HhhccCcceecc
Confidence 3566665444322111111244455555555443222 34566667777777665 333 444 46 7899
Q ss_pred ccccCCC------CCcCCC---CCeeecCCCCEEEeecCCC--CCChhHHHHHHHHHHHHHHhhhc
Q 024990 203 WGSAFPA------ASIAKE---ERCLWDVKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 203 W~~a~p~------~~~g~~---~~~~~~~~~~l~laGD~~~--g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
|...-.. ..+|.. .+.+..+.++|+|||+.+. .+.|+||++||+++|++|+..+.
T Consensus 88 W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~l~ 153 (181)
T 2e1m_C 88 WLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEAPV 153 (181)
T ss_dssp SSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 9653221 112210 0112345679999999876 77999999999999999998653
No 31
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=98.34 E-value=3.8e-06 Score=75.50 Aligned_cols=54 Identities=9% Similarity=0.138 Sum_probs=44.1
Q ss_pred ecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecC--CCce-EEEccCCCccccccEEEec
Q 024990 6 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLED--KNLW-SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~--~~~~-~v~~~~G~~~~~~d~VIla 63 (259)
.+.+||+.|+++|++.+ |++|+++++|.+|.. + ++++ .|.+ +|+.+ .+|+||+|
T Consensus 236 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~~~V~~-~g~~~-~ad~VV~a 295 (453)
T 2bcg_G 236 YPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLY--KKDTGKFEGVKT-KLGTF-KAPLVIAD 295 (453)
T ss_dssp EETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEE--ETTTTEEEEEEE-TTEEE-ECSCEEEC
T ss_pred eeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEE--ECCCCeEEEEEE-CCeEE-ECCEEEEC
Confidence 77999999999998664 789999999999997 4 5554 4555 56554 89999999
No 32
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=98.02 E-value=3.3e-05 Score=69.01 Aligned_cols=61 Identities=7% Similarity=0.037 Sum_probs=47.6
Q ss_pred ceecCCCchHHHHHHhcCC---CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCc
Q 024990 4 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 70 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~La~~l---~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~ 70 (259)
-|.+.+||+.|+++|++.+ +++|+++++|.+|.. +++++.....+|+.+ .+|+||+| +++.
T Consensus 226 ~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~--~~~~v~~v~~~g~~~-~ad~VV~a---~~~~ 289 (433)
T 1d5t_A 226 YLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSEGEVA-RCKQLICD---PSYV 289 (433)
T ss_dssp EEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEE--ETTEEEEEEETTEEE-ECSEEEEC---GGGC
T ss_pred EEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEE--eCCEEEEEEECCeEE-ECCEEEEC---CCCC
Confidence 3578999999999998654 788999999999997 556665323467654 89999999 6554
No 33
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=97.01 E-value=0.082 Score=49.36 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=44.8
Q ss_pred ceecCCCchHHHHHH---hcCCCCeeEcceEEEEEEeecCC--CceE-EEccCCCccccccEEEec
Q 024990 4 KYVGVPGMNSICKAL---CHQPGVESKFGVGVGRFEWLEDK--NLWS-VSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 4 ~~~~~~Gm~~l~~~L---a~~l~~~i~~~~~V~~I~~~~~~--~~~~-v~~~~G~~~~~~d~VIla 63 (259)
-+.+.+||++|+++| ++..|++|+++++|.+|.. ++ ++++ |.+.+|+.+ .+|+||++
T Consensus 370 ~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~--~~~~g~v~gV~~~~Ge~i-~A~~VVs~ 432 (650)
T 1vg0_A 370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVV--DKESRKCKAVIDQFGQRI-ISKHFIIE 432 (650)
T ss_dssp EEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEE--ETTTCCEEEEEETTSCEE-ECSEEEEE
T ss_pred eEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEE--eCCCCeEEEEEeCCCCEE-EcCEEEEC
Confidence 357789999999988 5556899999999999987 43 4443 445678765 89999987
No 34
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=97.00 E-value=0.0057 Score=52.86 Aligned_cols=193 Identities=14% Similarity=0.069 Sum_probs=98.5
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCCCcchh
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPD 89 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~~~~~ 89 (259)
.+.+.|.+ ..+++|+++++|.+|+. ++++|.|.+.+| . ..+|.||+| +.... ..+++. +.
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~--~~~~~~v~~~~g-~-~~a~~vV~A---~G~~s-~~l~~~-------~~-- 227 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-D-VWANHVVVA---SGVWS-GMFFKQ-------LG-- 227 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-E-EEEEEEEEC---CGGGT-HHHHHH-------TT--
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEEE--ECCEEEEEcCCc-e-EEcCEEEEC---CChhH-HHHHHh-------cC--
Confidence 34444433 34789999999999997 677888888777 4 389999999 44421 122221 00
Q ss_pred HHHHhccCCCcceeEEEEeccCCCCCCCccceeecCCCceEEEEecCCCCCCCCCCceEEEEeCHHHHHHHHhhcCCCCC
Q 024990 90 LAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKP 169 (259)
Q Consensus 90 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
..++..++...++.++.+.. ......+.+ ..|+. |.. + + .+.+-.+.++.. .+.
T Consensus 228 -----~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~---~~~~~-----p~~-~-g-~~~vG~~~~~~~--~~~------ 281 (382)
T 1ryi_A 228 -----LNNAFLPVKGECLSVWNDDI--PLTKTLYHD---HCYIV-----PRK-S-G-RLVVGATMKPGD--WSE------ 281 (382)
T ss_dssp -----CCCCCEEEEEEEEEEECCSS--CCCSEEEET---TEEEE-----ECT-T-S-EEEEECCCEETC--CCC------
T ss_pred -----CCCceeccceEEEEECCCCC--CccceEEcC---CEEEE-----EcC-C-C-eEEEeecccccC--CCC------
Confidence 01233344344444443211 111112211 12332 111 1 1 333333222110 000
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCCCCceEeEeeccccCCCCCcCCCCCeeec--CCCCEEEeecCCCCCChhHHHHHHHH
Q 024990 170 SEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWD--VKRRLAICGDFCVSPNVEGAILSGLD 247 (259)
Q Consensus 170 ~~~~~e~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~~~~g~~~~~~~~--~~~~l~laGD~~~g~~ie~A~~SG~~ 247 (259)
...++..+.+++.+.++++..... ...+.|....|..+.+ .+.+-. ..+++++|+- +.|.++.-|..+|+.
T Consensus 282 --~~~~~~~~~l~~~~~~~~p~l~~~--~~~~~w~g~~~~t~d~--~p~ig~~~~~~~l~~~~G-~~g~G~~~a~~~g~~ 354 (382)
T 1ryi_A 282 --TPDLGGLESVMKKAKTMLPAIQNM--KVDRFWAGLRPGTKDG--KPYIGRHPEDSRILFAAG-HFRNGILLAPATGAL 354 (382)
T ss_dssp --SCCHHHHHHHHHHHHHHCGGGGGS--EEEEEEEEEEEECSSS--CCEEEEETTEEEEEEEEC-CSSCTTTTHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhCCCcCCC--ceeeEEEEecccCCCC--CcEeccCCCcCCEEEEEc-CCcchHHHhHHHHHH
Confidence 012344566667777666543222 2345665444433221 233322 2357887765 456789999999999
Q ss_pred HHHHHHhh
Q 024990 248 AASKLTEI 255 (259)
Q Consensus 248 aA~~l~~~ 255 (259)
+|+.|...
T Consensus 355 la~~i~~~ 362 (382)
T 1ryi_A 355 ISDLIMNK 362 (382)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 99998754
No 35
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=96.77 E-value=0.02 Score=52.19 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=37.4
Q ss_pred CCCCeeEcceEEEEEEeecCCC----ceEEEccCC---CccccccEEEecCCCCCCcchhhhcC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKN----LWSVSGLDG---QSLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~----~~~v~~~~G---~~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
..+++|+++++|.+|+. +++ +|+++..++ .. ..+|.||.|+ =.....++.+.
T Consensus 132 ~~gv~i~~~~~v~~i~~--~~~~~~~~v~v~~~~~~~~~~-i~a~~vV~Ad--G~~S~vR~~lg 190 (535)
T 3ihg_A 132 KHGGAIRFGTRLLSFRQ--HDDDAGAGVTARLAGPDGEYD-LRAGYLVGAD--GNRSLVRESLG 190 (535)
T ss_dssp HTTCEEESSCEEEEEEE--ECGGGCSEEEEEEEETTEEEE-EEEEEEEECC--CTTCHHHHHTT
T ss_pred hCCCEEEeCCEEEEEEE--CCCCccccEEEEEEcCCCeEE-EEeCEEEECC--CCcchHHHHcC
Confidence 35899999999999998 666 888877665 33 4899999994 22234445553
No 36
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=96.68 E-value=0.0023 Score=57.74 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=45.3
Q ss_pred cceecCCCchHHHHHHhcC---CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 3 KKYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
+-+.+.+||+.|++.|++. .|++|+++++|.+|...+++..+.|++.+|+.+ .+|+||++
T Consensus 247 ~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i-~Ad~VI~a 309 (475)
T 3p1w_A 247 PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIA-YCDKVICD 309 (475)
T ss_dssp SEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEE-EEEEEEEC
T ss_pred ceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEE-ECCEEEEC
Confidence 3456789999999999665 478999999999998611222366888888764 89999999
No 37
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=96.64 E-value=0.0011 Score=57.93 Aligned_cols=59 Identities=10% Similarity=-0.056 Sum_probs=39.8
Q ss_pred cceecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 3 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 3 ~~~~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.-|...+||+.|+++|++.++.+|++|++|++|++ +++++.+...+... ..--+|+++|
T Consensus 311 ~~~~i~GG~~~l~~~l~~~l~~~i~l~~~V~~I~~--~~~gv~v~~~~~~~-~~g~~~~~~~ 369 (376)
T 2e1m_A 311 TYWEIEGGSRMLPETLAKDLRDQIVMGQRMVRLEY--YDPGRDGHHGELTG-PGGPAVAIQT 369 (376)
T ss_dssp CEEEETTCTTHHHHHHHHHGGGTEECSEEEEEEEE--CCCC--------------CCEEEEE
T ss_pred ceEEECCcHHHHHHHHHHhcCCcEEecCeEEEEEE--CCCceEEEeCCCcC-CCCCeeEEEe
Confidence 35788999999999999999888999999999998 66777665433221 2456677773
No 38
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=96.45 E-value=0.0015 Score=48.27 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=44.0
Q ss_pred cccEEEecCCCCCCcchhhhcCCCCCCCCCcchhHHHHhccCCCcceeEEEEeccCCCCC
Q 024990 56 QFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS 115 (259)
Q Consensus 56 ~~d~VIla~~~~p~~~a~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 115 (259)
+||+|||| +|...+..+.-. ++ +++...++++.+.|.+..++.+.|++++|.
T Consensus 7 ~Ad~VIvT---vP~~vL~~I~F~-P~----LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~ 58 (130)
T 2e1m_B 7 TGDLAIVT---IPFSSLRFVKVT-PP----FSYKKRRAVIETHYDQATKVLLEFSRRWWE 58 (130)
T ss_dssp EESEEEEC---SCHHHHTTSEEE-SC----CCHHHHHHHHHCCEECEEEEEEEESSCGGG
T ss_pred EcCEEEEc---CCHHHHhcCcCC-CC----CCHHHHHHHHhCCCcceeEEEEEECCCCCC
Confidence 79999999 999877665443 33 677888999999999999999999999984
No 39
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=96.43 E-value=0.0046 Score=54.47 Aligned_cols=71 Identities=8% Similarity=0.109 Sum_probs=56.1
Q ss_pred ecCCCchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCCCCCCcchhhhcCCCCCCCCC
Q 024990 6 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLT 85 (259)
Q Consensus 6 ~~~~Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~~~p~~~a~~ll~~~~~~~~~ 85 (259)
.+++|.++|.++|++..+++|++|++|.++ +.. ..+|+||.| +|.+.+...
T Consensus 217 ~P~gGy~~l~e~l~~~~g~~V~l~~~v~~~---------------~~~-~~~d~vI~T---~P~d~~~~~---------- 267 (397)
T 3hdq_A 217 MPLHGYTRMFQNMLSSPNIKVMLNTDYREI---------------ADF-IPFQHMIYT---GPVDAFFDF---------- 267 (397)
T ss_dssp EETTCHHHHHHHHTCSTTEEEEESCCGGGT---------------TTT-SCEEEEEEC---SCHHHHTTT----------
T ss_pred ccCCCHHHHHHHHHhccCCEEEECCeEEec---------------ccc-ccCCEEEEc---CCHHHHHHH----------
Confidence 589999999999999999999999988732 222 279999999 888765321
Q ss_pred cchhHHHHhccCCCcceeEEEEeccCC
Q 024990 86 FAPDLAVKLEEIPVNPCFALMLAFSEP 112 (259)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~~~~l~~~~~ 112 (259)
.+..+.|++...+.+.++.+
T Consensus 268 -------~~g~L~yrsl~~~~~~~~~~ 287 (397)
T 3hdq_A 268 -------CYGKLPYRSLEFRHETHDTE 287 (397)
T ss_dssp -------TTCCCCEEEEEEEEEEESSS
T ss_pred -------hcCCCCCceEEEEEEEeccc
Confidence 14558999999999999854
No 40
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=96.42 E-value=0.14 Score=46.32 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=39.1
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCC--ccccccEEEecCCCCCCcchhhhcC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~--~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
++..+++|+++++|.+|+. ++++|+|+..+|+ ....+|.||.|+ =..+..++.+.
T Consensus 117 ~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~~~a~~vVgAD--G~~S~VR~~lg 173 (499)
T 2qa2_A 117 ALGRGAELLRGHTVRALTD--EGDHVVVEVEGPDGPRSLTTRYVVGCD--GGRSTVRKAAG 173 (499)
T ss_dssp HHHTTCEEEESCEEEEEEE--CSSCEEEEEECSSCEEEEEEEEEEECC--CTTCHHHHHTT
T ss_pred HHhCCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCcEEEEeCEEEEcc--CcccHHHHHcC
Confidence 3445889999999999998 7778988877764 123899999994 22233445553
No 41
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=96.39 E-value=0.14 Score=46.32 Aligned_cols=55 Identities=16% Similarity=0.032 Sum_probs=38.7
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCC--ccccccEEEecCCCCCCcchhhhcC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~--~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
++..+++|+++++|.+|+. ++++|+|+..+|+ ....+|.||.|+ =..+..++.+.
T Consensus 116 ~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~~~a~~vVgAD--G~~S~VR~~lg 172 (500)
T 2qa1_A 116 ATGLGADIRRGHEVLSLTD--DGAGVTVEVRGPEGKHTLRAAYLVGCD--GGRSSVRKAAG 172 (500)
T ss_dssp HHHTTCEEEETCEEEEEEE--ETTEEEEEEEETTEEEEEEESEEEECC--CTTCHHHHHTT
T ss_pred HHHCCCEEECCcEEEEEEE--cCCeEEEEEEcCCCCEEEEeCEEEECC--CcchHHHHHcC
Confidence 3445889999999999998 6778888776663 123899999994 22233445554
No 42
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=96.27 E-value=0.045 Score=47.80 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCCeeEcceEEEEEEeecCCCce--EEEccCCCc-cccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLW--SVSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~--~v~~~~G~~-~~~~d~VIla~ 64 (259)
.+++|+++++|.+|+. +++++ .+.+.+|+. ...+|.||.|+
T Consensus 119 ~gv~i~~~~~v~~i~~--~~~~~~v~v~~~~g~~~~~~a~~vV~A~ 162 (421)
T 3nix_A 119 QGVDVEYEVGVTDIKF--FGTDSVTTIEDINGNKREIEARFIIDAS 162 (421)
T ss_dssp HTCEEECSEEEEEEEE--ETTEEEEEEEETTSCEEEEEEEEEEECC
T ss_pred CCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCCEEEEEcCEEEECC
Confidence 4889999999999998 55665 455677862 13899999993
No 43
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=96.15 E-value=0.047 Score=49.41 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCc---eEEEccCCC-ccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~-~~~~~d~VIla~ 64 (259)
..+++|+++++|.+|.. ++++ +++.+.+|+ ....+|.||.|+
T Consensus 123 ~~Gv~i~~~~~V~~v~~--~~~~v~gv~~~~~dG~~~~i~ad~VI~Ad 168 (512)
T 3e1t_A 123 RKGVDVRERHEVIDVLF--EGERAVGVRYRNTEGVELMAHARFIVDAS 168 (512)
T ss_dssp HTTCEEESSCEEEEEEE--ETTEEEEEEEECSSSCEEEEEEEEEEECC
T ss_pred hCCCEEEcCCEEEEEEE--ECCEEEEEEEEeCCCCEEEEEcCEEEECC
Confidence 36889999999999997 5553 566666775 124899999993
No 44
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=96.12 E-value=0.049 Score=50.14 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=37.8
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEc--cCC-CccccccEEEecCCCCCCcchhhhcC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSG--LDG-QSLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~--~~G-~~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
.+++|+++++|.+|+. ++++|+|+. .+| +. ..+|.||.|+ =..+..++.+.
T Consensus 161 ~gv~i~~~~~v~~l~~--~~~~v~v~~~~~~G~~~-~~a~~vV~AD--G~~S~vR~~lG 214 (570)
T 3fmw_A 161 AGAEIPRGHEVTRLRQ--DAEAVEVTVAGPSGPYP-VRARYGVGCD--GGRSTVRRLAA 214 (570)
T ss_dssp HTEECCBSCEEEECCB--CSSCEEEEEEETTEEEE-EEESEEEECS--CSSCHHHHHTT
T ss_pred CCCEEEeCCEEEEEEE--cCCeEEEEEEeCCCcEE-EEeCEEEEcC--CCCchHHHHcC
Confidence 4789999999999998 778888876 677 44 4899999994 22234445554
No 45
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=95.83 E-value=0.062 Score=49.72 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=33.3
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEcc-CC--CccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGL-DG--QSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-~G--~~~~~~d~VIla~ 64 (259)
++..+++|+++++|.+|+. .+++.|.|++. +| .. ..+|.||.|+
T Consensus 138 a~~~Gv~i~~g~~V~~v~~-~~g~~~~V~~~~~G~~~~-i~AdlVV~Ad 184 (591)
T 3i3l_A 138 ARSRGITVHEETPVTDVDL-SDPDRVVLTVRRGGESVT-VESDFVIDAG 184 (591)
T ss_dssp HHHTTCEEETTCCEEEEEC-CSTTCEEEEEEETTEEEE-EEESEEEECC
T ss_pred HHhCCCEEEeCCEEEEEEE-cCCCEEEEEEecCCceEE-EEcCEEEECC
Confidence 3346889999999999997 13567888776 66 33 3899999993
No 46
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=95.35 E-value=0.26 Score=42.36 Aligned_cols=40 Identities=10% Similarity=-0.088 Sum_probs=30.6
Q ss_pred CCCeeEcceEEEEEEeecCCCceE-EEcc---CCCccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWS-VSGL---DGQSLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~-v~~~---~G~~~~~~d~VIla~ 64 (259)
.+++|+++++|.+|+. ++++|. |++. ++.. ..+|.||.|+
T Consensus 115 ~gv~i~~~~~v~~i~~--~~~~v~gv~~~~~~~~~~-~~a~~vV~A~ 158 (397)
T 3cgv_A 115 AGADVWVKSPALGVIK--ENGKVAGAKIRHNNEIVD-VRAKMVIAAD 158 (397)
T ss_dssp HTCEEESSCCEEEEEE--ETTEEEEEEEEETTEEEE-EEEEEEEECC
T ss_pred CCCEEEECCEEEEEEE--eCCEEEEEEEEECCeEEE-EEcCEEEECC
Confidence 5789999999999998 566776 6552 3334 3899999993
No 47
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=95.00 E-value=1.5 Score=40.67 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhh
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.++|+++||.. .|.+++-|++.+..+|..|...
T Consensus 341 ~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~v 379 (639)
T 2dkh_A 341 LPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAV 379 (639)
T ss_dssp CCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHH
Confidence 67999999965 4678999999998888777653
No 48
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=94.88 E-value=0.25 Score=42.18 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++++++||.. .|.+++-|+++|..||+.|.+.+
T Consensus 276 ~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l 315 (397)
T 3oz2_A 276 MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAI 315 (397)
T ss_dssp ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 45899999963 56789999999999999887654
No 49
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=94.49 E-value=0.023 Score=48.76 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=33.5
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+++|+++++|.+|+. ++++|.|++.+| . ..+|+||+|
T Consensus 166 ~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~-i~a~~VV~A 204 (381)
T 3nyc_A 166 RNQGQVLCNHEALEIRR--VDGAWEVRCDAG-S-YRAAVLVNA 204 (381)
T ss_dssp HTTCEEESSCCCCEEEE--ETTEEEEECSSE-E-EEESEEEEC
T ss_pred HCCCEEEcCCEEEEEEE--eCCeEEEEeCCC-E-EEcCEEEEC
Confidence 35889999999999998 667799998888 4 389999999
No 50
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=94.47 E-value=0.021 Score=48.42 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=39.2
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla~ 64 (259)
....+.+++..++++++++.|.+|+. ++++|. |++++| .+ .||+||+|+
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~v~~~~g-~~-~~d~vV~At 128 (357)
T 4a9w_A 79 LAYLAQYEQKYALPVLRPIRVQRVSH--FGERLRVVARDGR-QW-LARAVISAT 128 (357)
T ss_dssp HHHHHHHHHHTTCCEECSCCEEEEEE--ETTEEEEEETTSC-EE-EEEEEEECC
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEE--CCCcEEEEEeCCC-EE-EeCEEEECC
Confidence 34444555667888999999999998 677899 998888 43 899999993
No 51
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=94.29 E-value=0.052 Score=51.09 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=37.5
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecCCCceEEEccCCC-ccccccEEEec
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~-~~~~~d~VIla 63 (259)
.+.+.|.+ ..+++|+++++|.+|+. ++++|.|.+.+|. .+ .+|+||+|
T Consensus 413 ~l~~aL~~~a~~~Gv~i~~~t~V~~l~~--~~~~v~V~t~~G~~~i-~Ad~VVlA 464 (689)
T 3pvc_A 413 DLTHALMMLAQQNGMTCHYQHELQRLKR--IDSQWQLTFGQSQAAK-HHATVILA 464 (689)
T ss_dssp HHHHHHHHHHHHTTCEEEESCCEEEEEE--CSSSEEEEEC-CCCCE-EESEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEeCCeEeEEEE--eCCeEEEEeCCCcEEE-ECCEEEEC
Confidence 44455443 35789999999999998 7778999988875 54 89999999
No 52
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=94.29 E-value=0.05 Score=47.90 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=34.3
Q ss_pred CCCCeeEcce---EEEEEEeecCCCceE-EEccCCCccccccEEEec
Q 024990 21 QPGVESKFGV---GVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~---~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla 63 (259)
..+++|++++ +|.+|.. ++++|. |.+.+|+.+ .+|+||+|
T Consensus 173 ~~Gv~i~~~t~~~~V~~i~~--~~~~v~gV~t~~G~~i-~Ad~VV~A 216 (438)
T 3dje_A 173 RMGVKFVTGTPQGRVVTLIF--ENNDVKGAVTADGKIW-RAERTFLC 216 (438)
T ss_dssp HTTCEEEESTTTTCEEEEEE--ETTEEEEEEETTTEEE-ECSEEEEC
T ss_pred hcCCEEEeCCcCceEEEEEe--cCCeEEEEEECCCCEE-ECCEEEEC
Confidence 4589999999 9999998 667888 888888554 89999999
No 53
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=94.21 E-value=0.047 Score=41.80 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=33.8
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..+++++++ +|.+|+. ++++|.|++++| .+ .+|.||+|+
T Consensus 66 ~~~~gv~v~~~-~v~~i~~--~~~~~~v~~~~g-~i-~ad~vI~A~ 106 (180)
T 2ywl_A 66 ARRYGAEVRPG-VVKGVRD--MGGVFEVETEEG-VE-KAERLLLCT 106 (180)
T ss_dssp HHHTTCEEEEC-CCCEEEE--CSSSEEEECSSC-EE-EEEEEEECC
T ss_pred HHHcCCEEEeC-EEEEEEE--cCCEEEEEECCC-EE-EECEEEECC
Confidence 34457899999 9999998 667899998888 43 899999993
No 54
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=94.21 E-value=0.044 Score=51.43 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=38.1
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+.+.|.+ ..+++|+++++|.+|.. ++++|.|++.+|..+ .+|.||+|
T Consensus 418 ~l~~aL~~~a~~~Gv~i~~~t~V~~l~~--~~~~v~V~t~~G~~i-~Ad~VVlA 468 (676)
T 3ps9_A 418 ELTRNVLELAQQQGLQIYYQYQLQNFSR--KDDCWLLNFAGDQQA-THSVVVLA 468 (676)
T ss_dssp HHHHHHHHHHHHTTCEEEESCCEEEEEE--ETTEEEEEETTSCEE-EESEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEE--eCCeEEEEECCCCEE-ECCEEEEC
Confidence 44444443 35789999999999998 677899998887654 89999999
No 55
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=94.13 E-value=0.058 Score=45.86 Aligned_cols=40 Identities=5% Similarity=-0.072 Sum_probs=33.1
Q ss_pred CCCCeeEcceEEEEEEeecCCCc-eEEEccCCC--ccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQ--SLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~--~~~~~d~VIla 63 (259)
..+++|+++++|.+|+. ++++ |.|.+.+|+ . ..+|.||+|
T Consensus 162 ~~Gv~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~~-~~a~~VV~A 204 (369)
T 3dme_A 162 SDGAQLVFHTPLIAGRV--RPEGGFELDFGGAEPMT-LSCRVLINA 204 (369)
T ss_dssp HTTCEEECSCCEEEEEE--CTTSSEEEEECTTSCEE-EEEEEEEEC
T ss_pred HCCCEEECCCEEEEEEE--cCCceEEEEECCCceeE-EEeCEEEEC
Confidence 35789999999999998 5555 999888883 3 389999999
No 56
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=93.93 E-value=0.042 Score=50.29 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=40.6
Q ss_pred chHHHHHHhcCCCC--eeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 11 MNSICKALCHQPGV--ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 11 m~~l~~~La~~l~~--~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+....+..++..++ +|+++++|.++++.+++++|.|++.+|+.+ .||.||+|+
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i-~ad~lV~At 143 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVY-RAKYVVNAV 143 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEE-EEEEEEECC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEE-EeCEEEECC
Confidence 34445556666666 799999999999843334899999899764 899999993
No 57
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=93.87 E-value=0.074 Score=45.40 Aligned_cols=46 Identities=4% Similarity=0.038 Sum_probs=37.2
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+.+++..+++|+++++|.+|+. ++++|.|.+.+|+ + .||+||+|+
T Consensus 94 l~~~~~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~-~-~~d~vVlAt 139 (369)
T 3d1c_A 94 LQVVANHYELNIFENTVVTNISA--DDAYYTIATTTET-Y-HADYIFVAT 139 (369)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEE--CSSSEEEEESSCC-E-EEEEEEECC
T ss_pred HHHHHHHcCCeEEeCCEEEEEEE--CCCeEEEEeCCCE-E-EeCEEEECC
Confidence 34455667889999999999998 6678999887774 3 899999993
No 58
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=93.79 E-value=0.042 Score=50.34 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=40.4
Q ss_pred chHHHHHHhcCCCC--eeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 11 MNSICKALCHQPGV--ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 11 m~~l~~~La~~l~~--~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+....+.+++..++ +|++++.|.++++.++.++|+|++++|+.+ .||.||+|+
T Consensus 101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i-~ad~lV~At 155 (549)
T 4ap3_A 101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEV-SARFLVVAA 155 (549)
T ss_dssp HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEE-EEEEEEECC
T ss_pred HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEE-EeCEEEECc
Confidence 33445556666665 789999999999843344799999999764 899999993
No 59
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=93.73 E-value=0.052 Score=48.14 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC---CC---ccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ---SLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~---G~---~~~~~d~VIla~ 64 (259)
.+.+++..+..|++++.|.+|+. .+++|.|++.+ |+ . ..||+||+|+
T Consensus 121 l~~~~~~~~~~i~~~t~V~~v~~--~~~~~~V~~~~~~~G~~~~~-~~~d~VVvAt 173 (447)
T 2gv8_A 121 QRIYAQPLLPFIKLATDVLDIEK--KDGSWVVTYKGTKAGSPISK-DIFDAVSICN 173 (447)
T ss_dssp HHHHHGGGGGGEECSEEEEEEEE--ETTEEEEEEEESSTTCCEEE-EEESEEEECC
T ss_pred HHHHHHHhhCeEEeCCEEEEEEe--CCCeEEEEEeecCCCCeeEE-EEeCEEEECC
Confidence 34445555667899999999998 66789998765 65 3 4899999993
No 60
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=93.66 E-value=0.097 Score=45.51 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHhcCC-CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQP-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l-~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.|.+.|.+.+ +++|+++++|.+|+. ++++|+|+..+|+.+ .+|.||.|+
T Consensus 129 ~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vV~Ad 178 (398)
T 2xdo_A 129 DLRAILLNSLENDTVIWDRKLVMLEP--GKKKWTLTFENKPSE-TADLVILAN 178 (398)
T ss_dssp HHHHHHHHTSCTTSEEESCCEEEEEE--CSSSEEEEETTSCCE-EESEEEECS
T ss_pred HHHHHHHhhcCCCEEEECCEEEEEEE--CCCEEEEEECCCcEE-ecCEEEECC
Confidence 4555666555 367899999999998 677899998888764 899999993
No 61
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=93.59 E-value=0.12 Score=44.26 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+++|+++++|.+|+. ++++|.|.+.+|+ ..+|+||+|
T Consensus 161 ~~G~~i~~~~~V~~i~~--~~~~~~v~~~~g~--~~a~~vV~a 199 (372)
T 2uzz_A 161 EAGCAQLFNCPVTAIRH--DDDGVTIETADGE--YQAKKAIVC 199 (372)
T ss_dssp HTTCEEECSCCEEEEEE--CSSSEEEEESSCE--EEEEEEEEC
T ss_pred HCCCEEEcCCEEEEEEE--cCCEEEEEECCCe--EEcCEEEEc
Confidence 35789999999999998 6678999887885 389999999
No 62
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=93.57 E-value=0.089 Score=45.64 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCeeEcceEEEEEEeecCCCce--EEEccCCCccccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLW--SVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~--~v~~~~G~~~~~~d~VIla~ 64 (259)
+++|+++++|.+|+. ++++| .|++.+|+.+ .+|.||.|+
T Consensus 122 gv~i~~~~~v~~i~~--~~~~v~g~v~~~~g~~~-~ad~vV~Ad 162 (399)
T 2x3n_A 122 TVEMLFETRIEAVQR--DERHAIDQVRLNDGRVL-RPRVVVGAD 162 (399)
T ss_dssp TEEEECSCCEEEEEE--CTTSCEEEEEETTSCEE-EEEEEEECC
T ss_pred CcEEEcCCEEEEEEE--cCCceEEEEEECCCCEE-ECCEEEECC
Confidence 688999999999998 77789 8988888754 899999993
No 63
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=93.13 E-value=0.11 Score=46.85 Aligned_cols=50 Identities=10% Similarity=-0.010 Sum_probs=38.9
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
........+..+++|+++++|.+|+. +++++.+++.+|+.+ .+|.||+|+
T Consensus 226 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~v~v~~~~g~~i-~aD~Vv~a~ 275 (499)
T 1xdi_A 226 ALVLEESFAERGVRLFKNARAASVTR--TGAGVLVTMTDGRTV-EGSHALMTI 275 (499)
T ss_dssp HHHHHHHHHHTTCEEETTCCEEEEEE--CSSSEEEEETTSCEE-EESEEEECC
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEE--eCCEEEEEECCCcEE-EcCEEEECC
Confidence 34444455567899999999999997 666788887788664 899999993
No 64
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=92.97 E-value=0.097 Score=46.47 Aligned_cols=50 Identities=26% Similarity=0.284 Sum_probs=37.4
Q ss_pred hHHHHHHhc---CCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecC
Q 024990 12 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+.+.|.+ ..+++|+++++|.+|.. ++++ |.|.+.+|+.+ .+|.||+|+
T Consensus 134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~--~~~~v~~V~~~~G~~i-~Ad~VVlAt 187 (447)
T 2i0z_A 134 QSVVDALLTRLKDLGVKIRTNTPVETIEY--ENGQTKAVILQTGEVL-ETNHVVIAV 187 (447)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEE--ETTEEEEEEETTCCEE-ECSCEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEe--cCCcEEEEEECCCCEE-ECCEEEECC
Confidence 344444433 35789999999999997 4555 88888888643 899999994
No 65
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=92.94 E-value=0.11 Score=45.09 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
......+..+++|++++.|.+|+. +++++.|.+.+|+.+ .+|.||+|
T Consensus 192 ~l~~~l~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~d~vv~a 238 (384)
T 2v3a_A 192 AVQAGLEGLGVRFHLGPVLASLKK--AGEGLEAHLSDGEVI-PCDLVVSA 238 (384)
T ss_dssp HHHHHHHTTTCEEEESCCEEEEEE--ETTEEEEEETTSCEE-EESEEEEC
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEe--cCCEEEEEECCCCEE-ECCEEEEC
Confidence 334444456899999999999997 566788888888764 89999999
No 66
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=92.93 E-value=0.09 Score=45.70 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=39.3
Q ss_pred hHHHHHHhcCC-CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQP-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l-~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..|.+.|.+.+ +++|+++++|.+|+. ++++|+|+..+|+.+ .+|.||.|
T Consensus 99 ~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vV~A 148 (397)
T 2vou_A 99 DSIYGGLYELFGPERYHTSKCLVGLSQ--DSETVQMRFSDGTKA-EANWVIGA 148 (397)
T ss_dssp HHHHHHHHHHHCSTTEETTCCEEEEEE--CSSCEEEEETTSCEE-EESEEEEC
T ss_pred HHHHHHHHHhCCCcEEEcCCEEEEEEe--cCCEEEEEECCCCEE-ECCEEEEC
Confidence 34555555543 578899999999998 778899998888754 89999999
No 67
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=92.89 E-value=0.094 Score=45.43 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=32.6
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+++|+++++|.+|+. ++++|.|.+.+|+ ..+|.||+|
T Consensus 165 ~~Gv~i~~~~~V~~i~~--~~~~v~v~t~~g~--i~a~~VV~A 203 (397)
T 2oln_A 165 AAGATLRAGETVTELVP--DADGVSVTTDRGT--YRAGKVVLA 203 (397)
T ss_dssp HTTCEEEESCCEEEEEE--ETTEEEEEESSCE--EEEEEEEEC
T ss_pred HcCCEEECCCEEEEEEE--cCCeEEEEECCCE--EEcCEEEEc
Confidence 35789999999999997 6668988876663 389999999
No 68
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=92.81 E-value=0.13 Score=45.00 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=38.0
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla 63 (259)
....+.+.+..+++|++++.|.+|+. +++++ .|.+.+|+.+ .+|.||+|
T Consensus 197 ~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~v~~v~l~dG~~i-~aD~Vv~a 246 (415)
T 3lxd_A 197 SEFYQAEHRAHGVDLRTGAAMDCIEG--DGTKVTGVRMQDGSVI-PADIVIVG 246 (415)
T ss_dssp HHHHHHHHHHTTCEEEETCCEEEEEE--SSSBEEEEEESSSCEE-ECSEEEEC
T ss_pred HHHHHHHHHhCCCEEEECCEEEEEEe--cCCcEEEEEeCCCCEE-EcCEEEEC
Confidence 44445555667899999999999997 55554 5777888764 89999999
No 69
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=92.81 E-value=0.066 Score=47.28 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=39.2
Q ss_pred hHHHHHHhcC---CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCC
Q 024990 12 NSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 65 (259)
Q Consensus 12 ~~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~ 65 (259)
..+.+.|.+. .+++|+++++|.+|+. ++++|.|.+.+| .+ .+|.||+|+-
T Consensus 132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~--~~~~~~V~~~~g-~i-~ad~VIlAtG 184 (417)
T 3v76_A 132 KDIIRMLMAEMKEAGVQLRLETSIGEVER--TASGFRVTTSAG-TV-DAASLVVASG 184 (417)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEE--ETTEEEEEETTE-EE-EESEEEECCC
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEE--eCCEEEEEECCc-EE-EeeEEEECCC
Confidence 4565555444 4789999999999997 667899998888 43 8999999943
No 70
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=92.57 E-value=0.045 Score=50.11 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=39.4
Q ss_pred hHHHHHHhcCCCC--eeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 12 NSICKALCHQPGV--ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~--~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
....+.+++..+. .|++++.|.++++.++++.|.|++++|+.+ .||.||+|+
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~-~ad~lV~At 143 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVV-TCRFLISAT 143 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEE-EEEEEEECC
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEE-EeCEEEECc
Confidence 3444555665554 789999999999843445799999898764 899999993
No 71
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=92.55 E-value=0.19 Score=43.30 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.|-+.|.+.++.+|+++++|.+++.. ++++++|+.+||+.. ++|.||-|+
T Consensus 113 ~L~~~L~~~~~~~v~~~~~v~~~~~~-~~~~v~v~~~dG~~~-~adlvVgAD 162 (412)
T 4hb9_A 113 ELKEILNKGLANTIQWNKTFVRYEHI-ENGGIKIFFADGSHE-NVDVLVGAD 162 (412)
T ss_dssp HHHHHHHTTCTTTEECSCCEEEEEEC-TTSCEEEEETTSCEE-EESEEEECC
T ss_pred HHHHHHHhhccceEEEEEEEEeeeEc-CCCeEEEEECCCCEE-EeeEEEECC
Confidence 46677888888889999999999872 445689999999864 899999884
No 72
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=92.54 E-value=0.12 Score=44.37 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+.+.|.+ ..+++|+++++|.+|+. ++++|.|++.+| . ..+|.||+|
T Consensus 151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~--~~~~~~v~~~~g-~-~~a~~vV~A 200 (389)
T 2gf3_A 151 NCIRAYRELAEARGAKVLTHTRVEDFDI--SPDSVKIETANG-S-YTADKLIVS 200 (389)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEE--CSSCEEEEETTE-E-EEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEe--cCCeEEEEeCCC-E-EEeCEEEEe
Confidence 34444433 34789999999999998 667899987776 3 389999999
No 73
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=92.48 E-value=0.12 Score=45.02 Aligned_cols=38 Identities=32% Similarity=0.240 Sum_probs=33.4
Q ss_pred CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 24 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++|+++++|.+|+. ++++|+|++.+|+.+ .+|.||.|+
T Consensus 140 ~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vV~Ad 177 (407)
T 3rp8_A 140 DSVQFGKRVTRCEE--DADGVTVWFTDGSSA-SGDLLIAAD 177 (407)
T ss_dssp GGEEESCCEEEEEE--ETTEEEEEETTSCEE-EESEEEECC
T ss_pred CEEEECCEEEEEEe--cCCcEEEEEcCCCEE-eeCEEEECC
Confidence 78899999999998 677899999899764 899999993
No 74
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=92.43 E-value=0.13 Score=45.82 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+...+..+++|+++++|.+|+. +++++.+...+|+.+ .+|.||+|+
T Consensus 206 ~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~aD~Vv~a~ 254 (472)
T 3iwa_A 206 QMLRHDLEKNDVVVHTGEKVVRLEG--ENGKVARVITDKRTL-DADLVILAA 254 (472)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEE--SSSBEEEEEESSCEE-ECSEEEECS
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEc--cCCeEEEEEeCCCEE-EcCEEEECC
Confidence 3344445557899999999999997 667777877888764 899999993
No 75
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=92.39 E-value=0.14 Score=46.71 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=37.9
Q ss_pred HHHHHHhcCCC--CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPG--VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~--~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+.+++..+ .+|+++++|.++++.++++.|+|++++|+.+ .+|.||+|+
T Consensus 98 ~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~-~ad~vV~At 150 (542)
T 1w4x_A 98 RYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRI-RARYLIMAS 150 (542)
T ss_dssp HHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEE-EEEEEEECC
T ss_pred HHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEE-EeCEEEECc
Confidence 33444555554 5789999999999832335799998888754 899999994
No 76
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.14 Score=43.89 Aligned_cols=39 Identities=21% Similarity=0.029 Sum_probs=33.0
Q ss_pred CCCCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla 63 (259)
..+++|+++++|.+|+. ++++|. |++.+| . ..+|.||+|
T Consensus 161 ~~Gv~i~~~~~v~~i~~--~~~~v~gv~~~~g-~-i~a~~VV~A 200 (382)
T 1y56_B 161 EYGAKLLEYTEVKGFLI--ENNEIKGVKTNKG-I-IKTGIVVNA 200 (382)
T ss_dssp HTTCEEECSCCEEEEEE--SSSBEEEEEETTE-E-EECSEEEEC
T ss_pred HCCCEEECCceEEEEEE--ECCEEEEEEECCc-E-EECCEEEEC
Confidence 35789999999999998 677887 887777 4 389999999
No 77
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=92.28 E-value=0.14 Score=45.89 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=36.2
Q ss_pred HhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 18 LCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 18 La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.++..+++|+++++|.+|+. +++++.|.+.+|+.+ .+|.||+|+
T Consensus 241 ~l~~~Gv~i~~~~~V~~i~~--~~~~v~v~~~~g~~i-~aD~Vi~A~ 284 (484)
T 3o0h_A 241 AMVAKGISIIYEATVSQVQS--TENCYNVVLTNGQTI-CADRVMLAT 284 (484)
T ss_dssp HHHHHTCEEESSCCEEEEEE--CSSSEEEEETTSCEE-EESEEEECC
T ss_pred HHHHCCCEEEeCCEEEEEEe--eCCEEEEEECCCcEE-EcCEEEEee
Confidence 33445889999999999998 677888888888654 899999993
No 78
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=92.16 E-value=0.18 Score=42.03 Aligned_cols=43 Identities=7% Similarity=-0.012 Sum_probs=35.0
Q ss_pred HhcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCCccccccEEEecC
Q 024990 18 LCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 18 La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.++..++++++++.|.+|+. .++ .|.|++.+|+ + .||+||+|+
T Consensus 76 ~~~~~~~~~~~~~~v~~i~~--~~~~~~~v~~~~g~-~-~~d~vVlAt 119 (332)
T 3lzw_A 76 QMAKFDQTICLEQAVESVEK--QADGVFKLVTNEET-H-YSKTVIITA 119 (332)
T ss_dssp HHTTSCCEEECSCCEEEEEE--CTTSCEEEEESSEE-E-EEEEEEECC
T ss_pred HHHHhCCcEEccCEEEEEEE--CCCCcEEEEECCCE-E-EeCEEEECC
Confidence 34456789999999999998 544 7999988886 3 899999993
No 79
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=92.04 E-value=0.24 Score=43.95 Aligned_cols=49 Identities=10% Similarity=-0.100 Sum_probs=37.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
....+...+..+++|+++++|.+|+. .++++.|.+++| . ..+|.||+|+
T Consensus 192 ~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~v~v~~~~g-~-i~aD~Vv~A~ 240 (452)
T 3oc4_A 192 VAEVQKSLEKQAVIFHFEETVLGIEE--TANGIVLETSEQ-E-ISCDSGIFAL 240 (452)
T ss_dssp HHHHHHHHHTTTEEEEETCCEEEEEE--CSSCEEEEESSC-E-EEESEEEECS
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEc--cCCeEEEEECCC-E-EEeCEEEECc
Confidence 34445555567899999999999997 566777877677 4 3899999994
No 80
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=92.02 E-value=0.12 Score=45.34 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=37.5
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
....+...+..+++|++++.|.+|+. +++...|++.+|+.+ .+|.||+|
T Consensus 188 ~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~dg~~i-~aD~Vv~a 236 (410)
T 3ef6_A 188 GAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSF-VADSALIC 236 (410)
T ss_dssp HHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETTSCEE-ECSEEEEC
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECCCCEE-EcCEEEEe
Confidence 33444445556899999999999987 555557888888764 89999999
No 81
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=91.60 E-value=5.3 Score=37.24 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=25.6
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhh
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.++|+++||.. .|.+++-+++.+..+|..|...
T Consensus 350 ~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~v 388 (665)
T 1pn0_A 350 DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLV 388 (665)
T ss_dssp TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHH
Confidence 47899999964 4668888888888887776543
No 82
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=91.57 E-value=0.2 Score=45.14 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=38.0
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
........+..+++|++++.|.+|+. +++++.|.+.+|+.+ .+|.||+|
T Consensus 229 ~~~~~~~l~~~GV~v~~~~~V~~i~~--~~~~~~v~l~dG~~i-~aD~Vv~a 277 (493)
T 1m6i_A 229 SNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGRKV-ETDHIVAA 277 (493)
T ss_dssp HHHHHHHHHTTTCEEECSCCEEEEEE--ETTEEEEEETTSCEE-EESEEEEC
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEe--cCCeEEEEECCCCEE-ECCEEEEC
Confidence 33444455667899999999999986 455677877888764 89999999
No 83
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=91.40 E-value=0.18 Score=44.72 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=37.1
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecC-CCce--EEEccCCC----ccccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLED-KNLW--SVSGLDGQ----SLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~-~~~~--~v~~~~G~----~~~~~d~VIla~ 64 (259)
....+.+++.++++|+++++|.+|++..+ ++.| +|++.+|+ . ..||+||+|+
T Consensus 130 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~-~~~d~lVlAt 188 (463)
T 3s5w_A 130 NDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELV-RTTRALVVSP 188 (463)
T ss_dssp HHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEE-EEESEEEECC
T ss_pred HHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEE-EEeCEEEECC
Confidence 34455667777888999999999997211 4445 67666664 4 3899999994
No 84
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=91.33 E-value=0.22 Score=41.80 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=34.0
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|.+|+. +++.|.|++.+|+.+ .||+||+|+
T Consensus 76 ~~~~~~~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~~~~lv~At 117 (335)
T 2zbw_A 76 APFNPVYSLGERAETLER--EGDLFKVTTSQGNAY-TAKAVIIAA 117 (335)
T ss_dssp GGGCCEEEESCCEEEEEE--ETTEEEEEETTSCEE-EEEEEEECC
T ss_pred HHcCCEEEeCCEEEEEEE--CCCEEEEEECCCCEE-EeCEEEECC
Confidence 345678899999999998 555899988888654 899999993
No 85
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=91.28 E-value=0.19 Score=43.85 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEec
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla 63 (259)
.....+.+..+++|++++.|.+|+. ++++. .|.+.+|+.+ .+|.||+|
T Consensus 188 ~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~v~~V~~~dG~~i-~aD~Vv~a 236 (404)
T 3fg2_P 188 SYFHDRHSGAGIRMHYGVRATEIAA--EGDRVTGVVLSDGNTL-PCDLVVVG 236 (404)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEE--ETTEEEEEEETTSCEE-ECSEEEEC
T ss_pred HHHHHHHHhCCcEEEECCEEEEEEe--cCCcEEEEEeCCCCEE-EcCEEEEC
Confidence 3344445567899999999999987 44443 4777888764 89999999
No 86
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=91.03 E-value=0.17 Score=44.88 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=33.7
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
+..+++|+++++|.+|+. +++++.+++.+|+.+ .+|.||+|
T Consensus 219 ~~~Gv~i~~~~~V~~i~~--~~~~v~v~~~~g~~i-~~D~vv~A 259 (455)
T 2yqu_A 219 KKQGLTIRTGVRVTAVVP--EAKGARVELEGGEVL-EADRVLVA 259 (455)
T ss_dssp HHHTCEEECSCCEEEEEE--ETTEEEEEETTSCEE-EESEEEEC
T ss_pred HHCCCEEEECCEEEEEEE--eCCEEEEEECCCeEE-EcCEEEEC
Confidence 345789999999999997 566788877777654 89999999
No 87
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=90.99 E-value=0.081 Score=44.74 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.2
Q ss_pred cCCCCEEEeecCCC--------CCChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCV--------SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~--------g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.|||-.. |+.+-+++.||++||+.|++.|+
T Consensus 281 t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la 325 (326)
T 3fpz_A 281 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 44678999998532 45677889999999999999885
No 88
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=90.94 E-value=0.19 Score=44.02 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=39.2
Q ss_pred chHHHHHHhcC---CCCeeEcceEEEEEEeecC----CCceEEEccCCCccccccEEEecCCCCC
Q 024990 11 MNSICKALCHQ---PGVESKFGVGVGRFEWLED----KNLWSVSGLDGQSLGQFNGVVASDKNVV 68 (259)
Q Consensus 11 m~~l~~~La~~---l~~~i~~~~~V~~I~~~~~----~~~~~v~~~~G~~~~~~d~VIla~~~~p 68 (259)
...+.+.|.+. .+++|+++++|.+|.. + +++|.|++.+| . ..+|+||+|+-..+
T Consensus 108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~--~~~g~~~~~~v~~~~g-~-i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 108 AEQIVEMLKSECDKYGAKILLRSEVSQVER--IQNDEKVRFVLQVNST-Q-WQCKNLIVATGGLS 168 (401)
T ss_dssp THHHHHHHHHHHHHHTCEEECSCCEEEEEE--CCSCSSCCEEEEETTE-E-EEESEEEECCCCSS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEc--ccCcCCCeEEEEECCC-E-EECCEEEECCCCcc
Confidence 34455555433 4789999999999997 5 56799988777 4 38999999953333
No 89
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=90.81 E-value=0.27 Score=44.99 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.9
Q ss_pred CCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+++|+++++|.+|.. ++++ +.|++.+|+.+ .+|.||+|+
T Consensus 233 ~Gv~I~~~t~V~~I~~--~~~~v~gV~l~~G~~i-~Ad~VVlA~ 273 (549)
T 3nlc_A 233 LGGEIRFSTRVDDLHM--EDGQITGVTLSNGEEI-KSRHVVLAV 273 (549)
T ss_dssp TTCEEESSCCEEEEEE--SSSBEEEEEETTSCEE-ECSCEEECC
T ss_pred cCCEEEeCCEEEEEEE--eCCEEEEEEECCCCEE-ECCEEEECC
Confidence 5789999999999997 5555 45888888764 899999993
No 90
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=90.62 E-value=0.32 Score=40.27 Aligned_cols=47 Identities=9% Similarity=0.069 Sum_probs=35.4
Q ss_pred HHhcCCCCeeEcceEEEEEEeecC-CCceEEEccCCCccccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLED-KNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~-~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..++..+++++++++|..|++..+ ++.|.|++++|+.+ .||+||+|+
T Consensus 64 ~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~-~~~~lv~At 111 (310)
T 1fl2_A 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVL-KARSIIVAT 111 (310)
T ss_dssp HHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEE-EEEEEEECC
T ss_pred HHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEE-EeCEEEECc
Confidence 344556889999999999986111 23799988888654 899999993
No 91
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=90.59 E-value=0.24 Score=44.90 Aligned_cols=45 Identities=22% Similarity=0.156 Sum_probs=35.3
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCc----eEEEccCCC-ccccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNL----WSVSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~----~~v~~~~G~-~~~~~d~VIla~ 64 (259)
...+..+++|+++++|.+|+. ++++ +.|++.+|+ .+ .+|.||+|+
T Consensus 263 ~~l~~~GV~i~~~~~V~~i~~--~~~~~v~~~~v~~~~G~~~i-~aD~Vv~A~ 312 (523)
T 1mo9_A 263 DRMKEQGMEIISGSNVTRIEE--DANGRVQAVVAMTPNGEMRI-ETDFVFLGL 312 (523)
T ss_dssp HHHHHTTCEEESSCEEEEEEE--CTTSBEEEEEEEETTEEEEE-ECSCEEECC
T ss_pred HHHHhCCcEEEECCEEEEEEE--cCCCceEEEEEEECCCcEEE-EcCEEEECc
Confidence 334456899999999999997 5555 778887885 43 899999994
No 92
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=90.54 E-value=0.36 Score=41.61 Aligned_cols=38 Identities=21% Similarity=0.097 Sum_probs=31.2
Q ss_pred CCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla 63 (259)
.+++|+++++|.+|+. ++++ |.|.+.+| . ..+|.||+|
T Consensus 187 ~g~~i~~~~~v~~i~~--~~~~~~~v~~~~g-~-~~a~~vV~a 225 (405)
T 2gag_B 187 MGVDIIQNCEVTGFIK--DGEKVTGVKTTRG-T-IHAGKVALA 225 (405)
T ss_dssp TTCEEECSCCEEEEEE--SSSBEEEEEETTC-C-EEEEEEEEC
T ss_pred CCCEEEcCCeEEEEEE--eCCEEEEEEeCCc-e-EECCEEEEC
Confidence 5789999999999997 5444 67887777 3 389999999
No 93
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=90.41 E-value=0.35 Score=42.76 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=33.0
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEcc---CCCc-cccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQS-LGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~---~G~~-~~~~d~VIla~ 64 (259)
.+++|++++.|.+|+. ++++|.|+.. +|+. ...+|.||+|+
T Consensus 329 ~~v~i~~~~~v~~v~~--~~~~~~v~~~~~~~g~~~~~~~D~Vv~At 373 (463)
T 3s5w_A 329 PRHAFRCMTTVERATA--TAQGIELALRDAGSGELSVETYDAVILAT 373 (463)
T ss_dssp CCSEEETTEEEEEEEE--ETTEEEEEEEETTTCCEEEEEESEEEECC
T ss_pred CCeEEEeCCEEEEEEe--cCCEEEEEEEEcCCCCeEEEECCEEEEee
Confidence 5789999999999998 6678888766 6653 23799999994
No 94
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=90.31 E-value=0.32 Score=43.72 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=36.1
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~~~~~~d~VIla~ 64 (259)
....++..+++|++++.|.+|+. +++ .+.|++.+|+.+ .+|.||+|+
T Consensus 237 l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~~v~~~~G~~i-~~D~vv~a~ 284 (490)
T 1fec_A 237 LTEQLRANGINVRTHENPAKVTK--NADGTRHVVFESGAEA-DYDVVMLAI 284 (490)
T ss_dssp HHHHHHHTTEEEEETCCEEEEEE--CTTSCEEEEETTSCEE-EESEEEECS
T ss_pred HHHHHHhCCCEEEeCCEEEEEEE--cCCCEEEEEECCCcEE-EcCEEEEcc
Confidence 33444456899999999999997 543 478888888654 899999993
No 95
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=90.26 E-value=0.44 Score=40.49 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=34.0
Q ss_pred cCCCCeeEcceEEEEEEeecCCC-ceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|.+|+. +++ .|.|++.+|+.+ .||.||+|+
T Consensus 85 ~~~~~~~~~~~~v~~i~~--~~~~~~~v~~~~g~~~-~~~~li~At 127 (360)
T 3ab1_A 85 ERYNPDVVLNETVTKYTK--LDDGTFETRTNTGNVY-RSRAVLIAA 127 (360)
T ss_dssp HTTCCEEECSCCEEEEEE--CTTSCEEEEETTSCEE-EEEEEEECC
T ss_pred HHhCCEEEcCCEEEEEEE--CCCceEEEEECCCcEE-EeeEEEEcc
Confidence 345788899999999998 444 799988888654 899999994
No 96
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=90.26 E-value=0.29 Score=43.63 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=36.2
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCC-ccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~-~~~~~d~VIla~ 64 (259)
....+..+++|++++.|.+|+. +++++.|++.+|+ .+ .+|.||+|+
T Consensus 214 ~~~l~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~G~~~i-~~D~vv~a~ 260 (463)
T 2r9z_A 214 AENMHAQGIETHLEFAVAALER--DAQGTTLVAQDGTRLE-GFDSVIWAV 260 (463)
T ss_dssp HHHHHHTTCEEESSCCEEEEEE--ETTEEEEEETTCCEEE-EESEEEECS
T ss_pred HHHHHHCCCEEEeCCEEEEEEE--eCCeEEEEEeCCcEEE-EcCEEEECC
Confidence 3334456899999999999997 5556888888887 54 899999993
No 97
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=90.11 E-value=0.37 Score=43.34 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=36.4
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~~~~~~d~VIla~ 64 (259)
......+..+++|++++.|.+|+. +++ .+.|++.+|+.+ .+|.||+|+
T Consensus 240 ~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~~v~~~~G~~i-~~D~vv~a~ 288 (495)
T 2wpf_A 240 EVTKQLTANGIEIMTNENPAKVSL--NTDGSKHVTFESGKTL-DVDVVMMAI 288 (495)
T ss_dssp HHHHHHHHTTCEEEESCCEEEEEE--CTTSCEEEEETTSCEE-EESEEEECS
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEE--cCCceEEEEECCCcEE-EcCEEEECC
Confidence 334444556899999999999997 443 477888888754 899999994
No 98
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=89.80 E-value=0.42 Score=39.58 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=33.0
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..++++++ +.|.+|+. +++.|.+.+.+|..+ .||+||+|+
T Consensus 80 ~~~~~v~~~~-~~v~~i~~--~~~~~~v~~~~g~~~-~~d~lvlAt 121 (323)
T 3f8d_A 80 IEKYEVPVLL-DIVEKIEN--RGDEFVVKTKRKGEF-KADSVILGI 121 (323)
T ss_dssp HHTTTCCEEE-SCEEEEEE--C--CEEEEESSSCEE-EEEEEEECC
T ss_pred HHHcCCEEEE-EEEEEEEe--cCCEEEEEECCCCEE-EcCEEEECc
Confidence 4456788888 99999998 777899998887664 899999993
No 99
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=89.77 E-value=0.33 Score=43.03 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=34.5
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEec
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla 63 (259)
...+..+++|++++.|.+|+. ++++ +.|++.+|+.+ .+|.||+|
T Consensus 216 ~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~v~~~~g~~i-~~D~vv~a 260 (450)
T 1ges_A 216 EVMNAEGPQLHTNAIPKAVVK--NTDGSLTLELEDGRSE-TVDCLIWA 260 (450)
T ss_dssp HHHHHHSCEEECSCCEEEEEE--CTTSCEEEEETTSCEE-EESEEEEC
T ss_pred HHHHHCCCEEEeCCEEEEEEE--eCCcEEEEEECCCcEE-EcCEEEEC
Confidence 334445789999999999997 5444 77888888754 89999999
No 100
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=89.47 E-value=0.42 Score=42.43 Aligned_cols=47 Identities=11% Similarity=-0.015 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCc-eEEE-ccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVS-GLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~-~~v~-~~~G~~~~~~d~VIla~ 64 (259)
.....++..+++|++++.|.+|+. ++++ +.|+ +.+|+ + .+|.||+|+
T Consensus 216 ~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~v~~~~~g~-i-~aD~Vv~a~ 264 (463)
T 4dna_A 216 GLHAAMEEKGIRILCEDIIQSVSA--DADGRRVATTMKHGE-I-VADQVMLAL 264 (463)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEE--CTTSCEEEEESSSCE-E-EESEEEECS
T ss_pred HHHHHHHHCCCEEECCCEEEEEEE--cCCCEEEEEEcCCCe-E-EeCEEEEee
Confidence 333444557899999999999997 5445 6788 88886 4 899999993
No 101
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=88.89 E-value=0.25 Score=44.03 Aligned_cols=35 Identities=6% Similarity=-0.205 Sum_probs=28.9
Q ss_pred cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
...++|+++||-..+..+.-|-..|+.+|+.|..+
T Consensus 305 t~~p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~ 339 (464)
T 2xve_A 305 EDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGR 339 (464)
T ss_dssp SSSTTEEECSCSCCSSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCcccccchHHHHHHHHHHHHHHcCC
Confidence 45689999999877778888889999998887654
No 102
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=88.69 E-value=0.52 Score=38.48 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=31.6
Q ss_pred cCCCCEEEeecCCC-CCChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~-g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
...++||.+||-.. ...+..|+..|+.||..|...|.
T Consensus 255 t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 292 (297)
T 3fbs_A 255 TTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSIL 292 (297)
T ss_dssp CSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHh
Confidence 34578999999887 56899999999999999988763
No 103
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=88.69 E-value=0.51 Score=41.96 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=35.1
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc-C--CC--ccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL-D--GQ--SLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-~--G~--~~~~~d~VIla~ 64 (259)
.+...+..+++|++++.|.+|+. +++++.++.. + |+ .+ .+|.||+|+
T Consensus 216 l~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i-~~D~vv~a~ 267 (464)
T 2eq6_A 216 LRRALEKEGIRVRTKTKAVGYEK--KKDGLHVRLEPAEGGEGEEV-VVDKVLVAV 267 (464)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEE--ETTEEEEEEEETTCCSCEEE-EESEEEECS
T ss_pred HHHHHHhcCCEEEcCCEEEEEEE--eCCEEEEEEeecCCCceeEE-EcCEEEECC
Confidence 33444456899999999999997 5566777665 5 75 43 899999993
No 104
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=88.67 E-value=0.5 Score=39.08 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=32.1
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhhcc
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
...++||.+||-..+ .....|+..|..||+.|...|..
T Consensus 271 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 310 (311)
T 2q0l_A 271 TNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEH 310 (311)
T ss_dssp CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 346789999999874 47999999999999999888754
No 105
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=88.52 E-value=0.39 Score=42.95 Aligned_cols=46 Identities=7% Similarity=-0.024 Sum_probs=34.4
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCc--eEEEccCC-CccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDG-QSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~--~~v~~~~G-~~~~~~d~VIla~ 64 (259)
....+..+++|++++.|.+|+. ++++ ..|++.+| +.+ .+|.||+|+
T Consensus 233 ~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~~v~~~~G~~~i-~~D~vv~a~ 281 (479)
T 2hqm_A 233 TDHYVKEGINVHKLSKIVKVEK--NVETDKLKIHMNDSKSID-DVDELIWTI 281 (479)
T ss_dssp HHHHHHHTCEEECSCCEEEEEE--CC-CCCEEEEETTSCEEE-EESEEEECS
T ss_pred HHHHHhCCeEEEeCCEEEEEEE--cCCCcEEEEEECCCcEEE-EcCEEEECC
Confidence 3334445899999999999987 5444 67777788 554 899999993
No 106
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=88.41 E-value=0.66 Score=41.70 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=35.7
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.....+..+++|++++.|.+|+. +++ .+.|+..+|+....+|.||+|+
T Consensus 223 l~~~l~~~gv~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~~~~D~vi~a~ 271 (500)
T 1onf_A 223 LENDMKKNNINIVTFADVVEIKK--VSDKNLSIHLSDGRIYEHFDHVIYCV 271 (500)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEE--SSTTCEEEEETTSCEEEEESEEEECC
T ss_pred HHHHHHhCCCEEEECCEEEEEEE--cCCceEEEEECCCcEEEECCEEEECC
Confidence 33444456899999999999987 443 3778777886513899999993
No 107
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=88.04 E-value=0.57 Score=40.32 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=34.7
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecC-CCceEEEc-cCCCc-cccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLED-KNLWSVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~-~~~~~v~~-~~G~~-~~~~d~VIla~ 64 (259)
|.+.+.+ .+++|+++++|.+|+. + +++|.|+. .+|+. ...+|.||.|+
T Consensus 109 L~~~~~~-~g~~i~~~~~v~~i~~--~~~~~~~v~~~~~g~~~~~~a~~vV~Ad 159 (394)
T 1k0i_A 109 LMEAREA-CGATTVYQAAEVRLHD--LQGERPYVTFERDGERLRLDCDYIAGCD 159 (394)
T ss_dssp HHHHHHH-TTCEEESSCEEEEEEC--TTSSSCEEEEEETTEEEEEECSEEEECC
T ss_pred HHHHHHh-cCCeEEeceeEEEEEE--ecCCceEEEEecCCcEEEEEeCEEEECC
Confidence 3344333 4789999999999986 4 35688876 68861 23899999994
No 108
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=87.86 E-value=0.49 Score=42.25 Aligned_cols=48 Identities=6% Similarity=-0.079 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC----CCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD----GQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~----G~~~~~~d~VIla~ 64 (259)
......+..+++|++++.|.+|+. ++++..|+..+ |+.+ .+|.||+|+
T Consensus 231 ~l~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~~~g~~~-~~D~vv~a~ 282 (482)
T 1ojt_A 231 VWQKQNEYRFDNIMVNTKTVAVEP--KEDGVYVTFEGANAPKEPQ-RYDAVLVAA 282 (482)
T ss_dssp HHHHHHGGGEEEEECSCEEEEEEE--ETTEEEEEEESSSCCSSCE-EESCEEECC
T ss_pred HHHHHHHhcCCEEEECCEEEEEEE--cCCeEEEEEeccCCCceEE-EcCEEEECc
Confidence 334444556789999999999997 55566676655 6554 799999993
No 109
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=87.81 E-value=0.76 Score=40.86 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCc-eEEEc-----cCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSG-----LDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~-----~~G~~~~~~d~VIla~ 64 (259)
......+..+++|++++.|.+|+. ++++ +.++. .+|+.+ .+|.||+|+
T Consensus 225 ~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~v~~~~~~~~~~~~i-~~D~vv~a~ 278 (474)
T 1zmd_A 225 NFQRILQKQGFKFKLNTKVTGATK--KSDGKIDVSIEAASGGKAEVI-TCDVLLVCI 278 (474)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEEE--CTTSCEEEEEEETTSCCCEEE-EESEEEECS
T ss_pred HHHHHHHHCCCEEEeCceEEEEEE--cCCceEEEEEEecCCCCceEE-EcCEEEECc
Confidence 344444556899999999999997 5555 77763 455444 899999993
No 110
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=87.44 E-value=0.64 Score=41.28 Aligned_cols=47 Identities=9% Similarity=-0.074 Sum_probs=33.7
Q ss_pred HHHHh-cCCCCeeEcceEEEEEEeecCCCceEEEcc--CC--CccccccEEEecC
Q 024990 15 CKALC-HQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DG--QSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La-~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~--~G--~~~~~~d~VIla~ 64 (259)
..... +..+++|++++.|.+|+. +++++.+... +| +. ..+|.||+|+
T Consensus 221 l~~~l~~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~-i~~D~vv~a~ 272 (468)
T 2qae_A 221 LVGALAKNEKMKFMTSTKVVGGTN--NGDSVSLEVEGKNGKRET-VTCEALLVSV 272 (468)
T ss_dssp HHHHHHHHTCCEEECSCEEEEEEE--CSSSEEEEEECC---EEE-EEESEEEECS
T ss_pred HHHHHhhcCCcEEEeCCEEEEEEE--cCCeEEEEEEcCCCceEE-EECCEEEECC
Confidence 33334 556899999999999997 6666777654 66 34 3899999993
No 111
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=87.43 E-value=0.44 Score=41.38 Aligned_cols=39 Identities=5% Similarity=0.128 Sum_probs=31.2
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+++++++++|.+|++ +++ +|++++|+.+ .||+||+||
T Consensus 74 ~~~i~~~~~~~V~~id~--~~~--~v~~~~g~~~-~yd~lvlAt 112 (385)
T 3klj_A 74 KNNIKVITSEFATSIDP--NNK--LVTLKSGEKI-KYEKLIIAS 112 (385)
T ss_dssp HTTCEEECSCCEEEEET--TTT--EEEETTSCEE-ECSEEEECC
T ss_pred HCCCEEEeCCEEEEEEC--CCC--EEEECCCCEE-ECCEEEEec
Confidence 45788999999999997 443 5666788764 899999993
No 112
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=86.97 E-value=0.77 Score=38.23 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=35.9
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceE-EEccC---C--CccccccEEEec
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLD---G--QSLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~---G--~~~~~~d~VIla 63 (259)
...+.+.|.+..+++|++++.|.+|+. ++++.. |+..+ | .. ..+|.||+|
T Consensus 211 ~~~~~~~l~~~~gv~i~~~~~v~~i~~--~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a 266 (338)
T 3itj_A 211 STIMQKRAEKNEKIEILYNTVALEAKG--DGKLLNALRIKNTKKNEETD-LPVSGLFYA 266 (338)
T ss_dssp CHHHHHHHHHCTTEEEECSEEEEEEEE--SSSSEEEEEEEETTTTEEEE-EECSEEEEC
T ss_pred CHHHHHHHHhcCCeEEeecceeEEEEc--ccCcEEEEEEEECCCCceEE-EEeCEEEEE
Confidence 456777777766899999999999997 554332 44333 3 33 379999999
No 113
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=86.67 E-value=0.97 Score=37.28 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=36.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC---CCc-cccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQS-LGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~---G~~-~~~~d~VIla 63 (259)
..+.+.+.+..++++++++.|.+|+. +++...|+..+ |+. ...+|.||++
T Consensus 193 ~~~~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~~~~D~vv~a 246 (323)
T 3f8d_A 193 PIYVETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIE 246 (323)
T ss_dssp HHHHHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEec--cCceeEEEEEECCCCceEEEEcCEEEEE
Confidence 46777888777899999999999997 54433454443 651 2389999999
No 114
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=86.57 E-value=0.77 Score=40.54 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=34.0
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla~ 64 (259)
......+..+++|+++++|.+|+. +++++. +.. +|+.+ .+|.||+|+
T Consensus 196 ~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~v~~v~~-~g~~i-~~D~vv~a~ 243 (452)
T 2cdu_A 196 ILAKDYEAHGVNLVLGSKVAAFEE--VDDEIITKTL-DGKEI-KSDIAILCI 243 (452)
T ss_dssp HHHHHHHHTTCEEEESSCEEEEEE--ETTEEEEEET-TSCEE-EESEEEECC
T ss_pred HHHHHHHHCCCEEEcCCeeEEEEc--CCCeEEEEEe-CCCEE-ECCEEEECc
Confidence 334444556899999999999986 445554 554 67654 899999993
No 115
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=86.54 E-value=1 Score=35.88 Aligned_cols=37 Identities=16% Similarity=0.013 Sum_probs=30.5
Q ss_pred cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-...+....|+++|+.+|+.|.+.|.
T Consensus 196 t~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~~l~ 232 (232)
T 2cul_A 196 KRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHELG 232 (232)
T ss_dssp TTSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHHHC-
T ss_pred cccccceeeeecccCccHHHHHHHHHHHHHHHHhhcC
Confidence 3567899999987445788889999999999998763
No 116
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=86.35 E-value=0.75 Score=40.90 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCC---CccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G---~~~~~~d~VIla~ 64 (259)
...+...+..+++|++++.|.+|+. ++++..+...++ +. ..+|.||+|+
T Consensus 225 ~~l~~~l~~~Gv~v~~~~~v~~i~~--~~~~~~v~~~~~~g~~~-~~~D~vi~a~ 276 (476)
T 3lad_A 225 KEAQKILTKQGLKILLGARVTGTEV--KNKQVTVKFVDAEGEKS-QAFDKLIVAV 276 (476)
T ss_dssp HHHHHHHHHTTEEEEETCEEEEEEE--CSSCEEEEEESSSEEEE-EEESEEEECS
T ss_pred HHHHHHHHhCCCEEEECCEEEEEEE--cCCEEEEEEEeCCCcEE-EECCEEEEee
Confidence 3334444556889999999999997 666777766544 33 3899999993
No 117
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=86.33 E-value=0.38 Score=41.91 Aligned_cols=39 Identities=8% Similarity=-0.025 Sum_probs=26.7
Q ss_pred CCCCeeEcceEEE---------EEEeecCCCceEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVG---------RFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~---------~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+++|+++++|. +|+. ++++|.|.+.+| . ..+|.||+|
T Consensus 184 ~~Gv~i~~~~~v~~~~g~~~~~~i~~--~~~~v~v~~~~g-~-i~a~~VV~A 231 (405)
T 3c4n_A 184 GQGAGLLLNTRAELVPGGVRLHRLTV--TNTHQIVVHETR-Q-IRAGVIIVA 231 (405)
T ss_dssp TTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-E-EEEEEEEEC
T ss_pred HCCCEEEcCCEEEeccccccccceEe--eCCeEEEEECCc-E-EECCEEEEC
Confidence 3578999999999 8987 666788877777 3 389999999
No 118
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=86.01 E-value=1 Score=37.51 Aligned_cols=37 Identities=22% Similarity=0.068 Sum_probs=31.8
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-... ..+..|+.+|..||..|...|.
T Consensus 297 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 335 (338)
T 3itj_A 297 TSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLT 335 (338)
T ss_dssp CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHh
Confidence 446799999998854 5899999999999999998875
No 119
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=85.07 E-value=1.1 Score=36.89 Aligned_cols=51 Identities=18% Similarity=0.030 Sum_probs=37.0
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCc---eEEEccCCC-ccccccEEEec
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~-~~~~~d~VIla 63 (259)
...+.+.+.+..+++|++++.|.+|+. ++++ +.+...+|+ ....+|.||+|
T Consensus 185 ~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~~v~~~~~~g~~~~~~~D~vv~a 239 (315)
T 3r9u_A 185 APSTVEKVKKNEKIELITSASVDEVYG--DKMGVAGVKVKLKDGSIRDLNVPGIFTF 239 (315)
T ss_dssp CHHHHHHHHHCTTEEEECSCEEEEEEE--ETTEEEEEEEECTTSCEEEECCSCEEEC
T ss_pred CHHHHHHHHhcCCeEEEeCcEEEEEEc--CCCcEEEEEEEcCCCCeEEeecCeEEEE
Confidence 345677777778999999999999987 4433 344444775 12379999999
No 120
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=84.58 E-value=0.9 Score=40.24 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=34.2
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc-CC--CccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL-DG--QSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-~G--~~~~~~d~VIla~ 64 (259)
.....+..+++|++++.|.+|+. +++++.+... +| +. ..+|.||+|+
T Consensus 218 l~~~l~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~~g~~~~-~~~D~vv~a~ 267 (464)
T 2a8x_A 218 IEKQFKKLGVTILTATKVESIAD--GGSQVTVTVTKDGVAQE-LKAEKVLQAI 267 (464)
T ss_dssp HHHHHHHHTCEEECSCEEEEEEE--CSSCEEEEEESSSCEEE-EEESEEEECS
T ss_pred HHHHHHHcCCEEEeCcEEEEEEE--cCCeEEEEEEcCCceEE-EEcCEEEECC
Confidence 33344455889999999999997 5556777654 56 34 3899999993
No 121
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=84.26 E-value=1 Score=39.85 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=33.9
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc---CC--CccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL---DG--QSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~---~G--~~~~~~d~VIla~ 64 (259)
.....+..+++|++++.|.+|+. +++++.++.. +| +. ..+|.||+|+
T Consensus 224 l~~~l~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~ 275 (470)
T 1dxl_A 224 FQRSLEKQGMKFKLKTKVVGVDT--SGDGVKLTVEPSAGGEQTI-IEADVVLVSA 275 (470)
T ss_dssp HHHHHHHSSCCEECSEEEEEEEC--SSSSEEEEEEESSSCCCEE-EEESEEECCC
T ss_pred HHHHHHHcCCEEEeCCEEEEEEE--cCCeEEEEEEecCCCcceE-EECCEEEECC
Confidence 33444456889999999999997 5556766643 44 33 3899999993
No 122
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=84.23 E-value=0.79 Score=38.27 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=31.1
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-... .....|+..|..||..|...|.
T Consensus 285 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 323 (333)
T 1vdc_A 285 TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQ 323 (333)
T ss_dssp CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHHH
Confidence 346789999998765 5788999999999999988763
No 123
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=84.16 E-value=1.2 Score=40.25 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=34.6
Q ss_pred hcCCCCeeEcceEEEEEEeecC-CCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLED-KNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~-~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..+++++++++|.+|.+..+ ++.|.|++++|..+ .+|+||+|+
T Consensus 277 ~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~-~~d~vVlAt 322 (521)
T 1hyu_A 277 VSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVL-KARSIIIAT 322 (521)
T ss_dssp HHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEE-EEEEEEECC
T ss_pred HHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEE-EcCEEEECC
Confidence 4456889999999999986111 33799988888664 899999993
No 124
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=83.80 E-value=1.3 Score=39.02 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCCEEEeecC------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++++++||. +.|.++.-|+++|..+|+.|...+
T Consensus 281 ~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l 320 (453)
T 3atr_A 281 WNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAF 320 (453)
T ss_dssp ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 4689999985 457799999999999999987643
No 125
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=83.42 E-value=0.84 Score=40.35 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=33.1
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc---CCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~---~G~~~~~~d~VIla~ 64 (259)
....+..+++|++++.|.+|+. +++++.++.. +|+.+ .+|.||+|+
T Consensus 218 ~~~l~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~~g~~~~~-~~D~vv~a~ 266 (455)
T 1ebd_A 218 KKRLKKKGVEVVTNALAKGAEE--REDGVTVTYEANGETKTI-DADYVLVTV 266 (455)
T ss_dssp HHHHHHTTCEEEESEEEEEEEE--ETTEEEEEEEETTEEEEE-EESEEEECS
T ss_pred HHHHHHCCCEEEeCCEEEEEEE--eCCeEEEEEEeCCceeEE-EcCEEEECc
Confidence 3334456899999999999997 5556766543 34443 899999993
No 126
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=83.40 E-value=2.6 Score=34.96 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=35.4
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc---CCC-ccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~---~G~-~~~~~d~VIla 63 (259)
..+.+.+.+..+++|++++.|.+|.. ++....|... +|+ ....+|.||+|
T Consensus 191 ~~~~~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~~~g~~~~i~~D~vi~a 244 (325)
T 2q7v_A 191 KVAQARAFANPKMKFIWDTAVEEIQG--ADSVSGVKLRNLKTGEVSELATDGVFIF 244 (325)
T ss_dssp HHHHHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred hHHHHHHHhcCCceEecCCceEEEcc--CCcEEEEEEEECCCCcEEEEEcCEEEEc
Confidence 45677777767899999999999987 4332234332 564 12389999999
No 127
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=83.38 E-value=1.1 Score=40.61 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeec-----------------CCCceEEEccCCCccccccEEEecCCCCCC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLE-----------------DKNLWSVSGLDGQSLGQFNGVVASDKNVVS 69 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~-----------------~~~~~~v~~~~G~~~~~~d~VIla~~~~p~ 69 (259)
.......+..+++|++++.|.+|+... .++++.+...+|+.+ .+|.||+|+-..|.
T Consensus 196 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~ 268 (565)
T 3ntd_A 196 GFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELL-ETDLLIMAIGVRPE 268 (565)
T ss_dssp HHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEE-EESEEEECSCEEEC
T ss_pred HHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEE-EcCEEEECcCCccc
Confidence 334444556789999999999998610 144567777788764 89999999543344
No 128
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=83.35 E-value=1.4 Score=39.38 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=31.4
Q ss_pred CCCCeeEcceEEEEEEeecCCCc--eEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~--~~v~~~~G~~~~~~d~VIla 63 (259)
..+++++++ +|.+|+. ++++ +.|++.+|+.+ .+|.||.|
T Consensus 185 ~~gv~~~~~-~v~~i~~--~~~~~~~~v~~~~g~~~-~ad~vV~A 225 (511)
T 2weu_A 185 ARGVRHVVD-DVQHVGQ--DERGWISGVHTKQHGEI-SGDLFVDC 225 (511)
T ss_dssp HTTCEEEEC-CEEEEEE--CTTSCEEEEEESSSCEE-ECSEEEEC
T ss_pred HCCCEEEEC-eEeEEEE--cCCCCEEEEEECCCCEE-EcCEEEEC
Confidence 368899999 9999987 5555 66777788654 89999999
No 129
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=83.27 E-value=1.6 Score=35.99 Aligned_cols=42 Identities=10% Similarity=-0.038 Sum_probs=29.0
Q ss_pred cCCCCeeEcceEEEEEEeecCCCce-EEEccC----CC-ccccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLW-SVSGLD----GQ-SLGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~----G~-~~~~~d~VIla 63 (259)
+..+++|++++.|.+|+. ++++. .|...+ |+ ....+|.||+|
T Consensus 195 ~~~gv~i~~~~~v~~i~~--~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a 242 (320)
T 1trb_A 195 ENGNIILHTNRTLEEVTG--DQMGVTGVRLRDTQNSDNIESLDVAGLFVA 242 (320)
T ss_dssp HTSSEEEECSCEEEEEEE--CSSSEEEEEEECCTTCCCCEEEECSEEEEC
T ss_pred ccCCeEEEcCceeEEEEc--CCCceEEEEEEeccCCCceEEEEcCEEEEE
Confidence 346899999999999997 54442 243333 42 22489999999
No 130
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=83.25 E-value=0.34 Score=41.98 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=33.1
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
..+++|++++.|..++. +++...+.+++|+.+ .+|.||++
T Consensus 214 ~~gi~v~~~~~v~~v~~--~~~~~~v~~~~g~~i-~~D~vi~~ 253 (401)
T 3vrd_B 214 NALIEWHPGPDAAVVKT--DTEAMTVETSFGETF-KAAVINLI 253 (401)
T ss_dssp TCSEEEECTTTTCEEEE--ETTTTEEEETTSCEE-ECSEEEEC
T ss_pred hcCcEEEeCceEEEEEe--cccceEEEcCCCcEE-EeeEEEEe
Confidence 34678999999999987 556667888899865 89999999
No 131
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=83.17 E-value=0.93 Score=40.21 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=33.7
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
....+..+++|++++.|.+|+. +++.+.|.++++ .+ .+|.||+|+
T Consensus 223 ~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~v~~~~~-~i-~aD~Vv~a~ 267 (467)
T 1zk7_A 223 TAAFRAEGIEVLEHTQASQVAH--MDGEFVLTTTHG-EL-RADKLLVAT 267 (467)
T ss_dssp HHHHHHTTCEEETTCCEEEEEE--ETTEEEEEETTE-EE-EESEEEECS
T ss_pred HHHHHhCCCEEEcCCEEEEEEE--eCCEEEEEECCc-EE-EcCEEEECC
Confidence 3334456899999999999997 556677776544 43 899999993
No 132
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=83.05 E-value=1.4 Score=39.45 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEcc---CCCc-cccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQS-LGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~---~G~~-~~~~d~VIla 63 (259)
.+++|+++++|.+|.. +++.|.|++. +|+. ...+|.||+|
T Consensus 162 ~Gv~i~~~~~V~~l~~--~~~~~~V~~~d~~~G~~~~i~A~~VV~A 205 (501)
T 2qcu_A 162 KGGEVLTRTRATSARR--ENGLWIVEAEDIDTGKKYSWQARGLVNA 205 (501)
T ss_dssp TTCEEECSEEEEEEEE--ETTEEEEEEEETTTCCEEEEEESCEEEC
T ss_pred cCCEEEcCcEEEEEEE--eCCEEEEEEEECCCCCEEEEECCEEEEC
Confidence 5789999999999997 5566777763 5641 2389999999
No 133
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=82.96 E-value=1.3 Score=36.53 Aligned_cols=37 Identities=16% Similarity=0.032 Sum_probs=31.2
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.+||-... ..+..|+.+|..||..|...|.
T Consensus 276 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 314 (320)
T 1trb_A 276 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 314 (320)
T ss_dssp CSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHH
Confidence 345789999998765 3788999999999999998874
No 134
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=82.55 E-value=1.7 Score=39.68 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=30.7
Q ss_pred CCCCeeEcceEEEEEEeecCC-Cc---eEEEccCCCc-cccccEEEecCC
Q 024990 21 QPGVESKFGVGVGRFEWLEDK-NL---WSVSGLDGQS-LGQFNGVVASDK 65 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~-~~---~~v~~~~G~~-~~~~d~VIla~~ 65 (259)
..+++|+++++|.+|.. ++ ++ +.+.+.+|+. ...+|.||+|+-
T Consensus 262 ~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtG 309 (566)
T 1qo8_A 262 EQGIDTRLNSRVVKLVV--NDDHSVVGAVVHGKHTGYYMIGAKSVVLATG 309 (566)
T ss_dssp HTTCCEECSEEEEEEEE--CTTSBEEEEEEEETTTEEEEEEEEEEEECCC
T ss_pred hcCCEEEeCCEEEEEEE--CCCCcEEEEEEEeCCCcEEEEEcCEEEEecC
Confidence 35789999999999987 54 43 4444446742 237999999953
No 135
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=82.52 E-value=2.4 Score=34.88 Aligned_cols=50 Identities=12% Similarity=-0.129 Sum_probs=35.3
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCce-EEEcc---CCCc-cccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLW-SVSGL---DGQS-LGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~---~G~~-~~~~d~VIla 63 (259)
..+.+.|.+..+++|++++.|.+|+. ++++. .|... +|+. ...+|.||+|
T Consensus 182 ~~~~~~l~~~~gv~v~~~~~v~~i~~--~~~~v~~v~~~~~~~g~~~~i~~D~vi~a 236 (311)
T 2q0l_A 182 PITLEHAKNNDKIEFLTPYVVEEIKG--DASGVSSLSIKNTATNEKRELVVPGFFIF 236 (311)
T ss_dssp HHHHHHHHTCTTEEEETTEEEEEEEE--ETTEEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred HHHHHHHhhCCCeEEEeCCEEEEEEC--CCCcEeEEEEEecCCCceEEEecCEEEEE
Confidence 45667777667899999999999987 43432 34333 5651 2389999999
No 136
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=82.46 E-value=1.7 Score=38.67 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCC-ceEEEccCCC----ccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQ----SLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~-~~~v~~~~G~----~~~~~d~VIla~ 64 (259)
......+..+++|++++.|.+|+. +++ ...|+..+|. ....+|.||+|+
T Consensus 232 ~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~ 285 (483)
T 3dgh_A 232 LVAASMEERGIPFLRKTVPLSVEK--QDDGKLLVKYKNVETGEESEDVYDTVLWAI 285 (483)
T ss_dssp HHHHHHHHTTCCEEETEEEEEEEE--CTTSCEEEEEEETTTCCEEEEEESEEEECS
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEE--cCCCcEEEEEecCCCCceeEEEcCEEEECc
Confidence 334444556889999999999997 443 4566655543 123799999993
No 137
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=82.36 E-value=1.3 Score=35.21 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=28.0
Q ss_pred CCeeEcceEEEEEEeecCCCc-eEEEccCCCccccccEEEec
Q 024990 23 GVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~-~~v~~~~G~~~~~~d~VIla 63 (259)
+++++ +++|.+|.. ++++ |.|.+.+|+.+ .+|.||+|
T Consensus 83 gv~i~-~~~v~~i~~--~~~~v~~v~~~~g~~i-~a~~VV~A 120 (232)
T 2cul_A 83 PLHLF-QATATGLLL--EGNRVVGVRTWEGPPA-RGEKVVLA 120 (232)
T ss_dssp TEEEE-ECCEEEEEE--ETTEEEEEEETTSCCE-ECSEEEEC
T ss_pred CcEEE-EeEEEEEEE--eCCEEEEEEECCCCEE-ECCEEEEC
Confidence 67777 679999987 4455 45777778654 89999999
No 138
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=82.21 E-value=1.4 Score=39.56 Aligned_cols=51 Identities=14% Similarity=0.026 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCC------CceEEEccCCC----ccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDK------NLWSVSGLDGQ----SLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~------~~~~v~~~~G~----~~~~~d~VIla~ 64 (259)
-.+..|+.++..|++++.|.+|++...+ +.|+|++.++. ....+++||+|+
T Consensus 150 Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlat 210 (501)
T 4b63_A 150 YMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAI 210 (501)
T ss_dssp HHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECC
T ss_pred HHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECc
Confidence 3445577777778999999999973222 24999876543 123799999994
No 139
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=82.11 E-value=1.2 Score=39.77 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC---CC-ccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~---G~-~~~~~d~VIla~ 64 (259)
...+...+..+++|++++.|.+|+. +++++.+...+ |+ ....+|.||+|+
T Consensus 243 ~~l~~~l~~~gV~v~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~ 296 (491)
T 3urh_A 243 KQLQRMLTKQGIDFKLGAKVTGAVK--SGDGAKVTFEPVKGGEATTLDAEVVLIAT 296 (491)
T ss_dssp HHHHHHHHHTTCEEECSEEEEEEEE--ETTEEEEEEEETTSCCCEEEEESEEEECC
T ss_pred HHHHHHHHhCCCEEEECCeEEEEEE--eCCEEEEEEEecCCCceEEEEcCEEEEee
Confidence 3344444556899999999999997 56676665542 52 223899999994
No 140
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=81.85 E-value=0.95 Score=38.33 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=32.6
Q ss_pred hcCCC-CeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 19 CHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 19 a~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
.+..+ ++|++++.|.+|+. +++++.|+..+|+.+..+|.||+|
T Consensus 224 l~~~g~v~~~~~~~v~~i~~--~~~~~~v~~~~g~~~~~~d~vi~a 267 (369)
T 3d1c_A 224 IKQGARIEMNVHYTVKDIDF--NNGQYHISFDSGQSVHTPHEPILA 267 (369)
T ss_dssp HHTTCCEEEECSCCEEEEEE--ETTEEEEEESSSCCEEESSCCEEC
T ss_pred HhhCCcEEEecCcEEEEEEe--cCCceEEEecCCeEeccCCceEEe
Confidence 33454 89999999999986 456677877888754346999999
No 141
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=81.79 E-value=2.3 Score=38.05 Aligned_cols=38 Identities=16% Similarity=0.008 Sum_probs=30.6
Q ss_pred CeeEcceEEEEEEeecCCCceEEEcc--CC--CccccccEEEecC
Q 024990 24 VESKFGVGVGRFEWLEDKNLWSVSGL--DG--QSLGQFNGVVASD 64 (259)
Q Consensus 24 ~~i~~~~~V~~I~~~~~~~~~~v~~~--~G--~~~~~~d~VIla~ 64 (259)
++|++++.|.+|+. +++++.++.. +| .. ..+|.||+|+
T Consensus 229 V~i~~~~~v~~i~~--~~~~v~v~~~~~~G~~~~-i~~D~Vi~a~ 270 (492)
T 3ic9_A 229 FYFDAKARVISTIE--KEDAVEVIYFDKSGQKTT-ESFQYVLAAT 270 (492)
T ss_dssp SEEETTCEEEEEEE--CSSSEEEEEECTTCCEEE-EEESEEEECS
T ss_pred cEEEECCEEEEEEE--cCCEEEEEEEeCCCceEE-EECCEEEEee
Confidence 88999999999997 6667777664 66 34 3899999994
No 142
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=81.72 E-value=1.4 Score=40.03 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCeeEcceEEEEEEeecCCCc--eEEEccCCCccccccEEEec
Q 024990 23 GVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~--~~v~~~~G~~~~~~d~VIla 63 (259)
+++|+++ +|.+|+. ++++ +.|.+.+|+.+ .+|.||.|
T Consensus 209 Gv~i~~~-~V~~i~~--~~~g~~~~v~~~~G~~i-~ad~vI~A 247 (550)
T 2e4g_A 209 GVRHVED-RVEHVQR--DANGNIESVRTATGRVF-DADLFVDC 247 (550)
T ss_dssp CCEEEEC-CEEEEEE--CTTSCEEEEEETTSCEE-ECSEEEEC
T ss_pred CcEEEEC-eEeEEEE--cCCCCEEEEEECCCCEE-ECCEEEEC
Confidence 7899999 9999987 5455 56777788654 89999999
No 143
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=81.54 E-value=2.3 Score=38.81 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=30.0
Q ss_pred CCCCeeEcceEEEEEEeecCC-Cc---eEEEccCCCc-cccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDK-NL---WSVSGLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~-~~---~~v~~~~G~~-~~~~d~VIla~ 64 (259)
..+++|+++++|.+|.. ++ ++ +.+...+|+. ...+|.||+|+
T Consensus 267 ~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAt 313 (571)
T 1y0p_A 267 KRNIDLRMNTRGIEVLK--DDKGTVKGILVKGMYKGYYWVKADAVILAT 313 (571)
T ss_dssp HTTCEEESSEEEEEEEE--CTTSCEEEEEEEETTTEEEEEECSEEEECC
T ss_pred hcCCEEEeCCEeeEeEE--cCCCeEEEEEEEeCCCcEEEEECCeEEEeC
Confidence 35799999999999987 44 43 3444336641 23799999994
No 144
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=81.32 E-value=1.4 Score=39.49 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=31.5
Q ss_pred CCCCeeEcceEEEEEEeec-CCCceEEEc--c-CC--CccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLE-DKNLWSVSG--L-DG--QSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~-~~~~~~v~~--~-~G--~~~~~~d~VIla~ 64 (259)
..+++|++++.|.+|+... ++++|.|+. . +| .. ..+|.||+|+
T Consensus 178 ~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~-i~ad~VV~A~ 226 (497)
T 2bry_A 178 LLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLAS-YEFDVLISAA 226 (497)
T ss_dssp HTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHT-CCBSEEEECC
T ss_pred hCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEE-EEcCEEEECC
Confidence 3678999999999998610 245688776 3 55 33 3899999993
No 145
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=81.31 E-value=1.7 Score=36.04 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=30.7
Q ss_pred CCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||-... .....|+..|..||+.|...|.
T Consensus 275 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 312 (325)
T 2q7v_A 275 NIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLA 312 (325)
T ss_dssp SSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999998764 4789999999999999988764
No 146
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=81.25 E-value=1.5 Score=39.22 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=36.5
Q ss_pred CchHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 10 GMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 10 Gm~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|...+-+ .++..+++|++++.|.+|+. +++...+.+.+|+.+ .+|.||+|+
T Consensus 259 G~~gle~-~l~~~GV~v~~~~~v~~i~~--~~~v~~v~~~~g~~i-~aD~Vv~a~ 309 (493)
T 1y56_A 259 KADEVIQ-ELERWGIDYVHIPNVKRVEG--NEKVERVIDMNNHEY-KVDALIFAD 309 (493)
T ss_dssp THHHHHH-HHHHHTCEEEECSSEEEEEC--SSSCCEEEETTCCEE-ECSEEEECC
T ss_pred CHHHHHH-HHHhCCcEEEeCCeeEEEec--CCceEEEEeCCCeEE-EeCEEEECC
Confidence 3434433 34456899999999999986 544455667788664 899999993
No 147
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=81.04 E-value=1.9 Score=37.86 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.......+..+++|++++.|.+|+. +++.+.+.+ +|..+ .+|.||+|+
T Consensus 195 ~~l~~~l~~~gv~i~~~~~v~~i~~--~~~v~~v~~-~~~~i-~~d~vi~a~ 242 (447)
T 1nhp_A 195 DVLTEEMEANNITIATGETVERYEG--DGRVQKVVT-DKNAY-DADLVVVAV 242 (447)
T ss_dssp HHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEE-SSCEE-ECSEEEECS
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEc--cCcEEEEEE-CCCEE-ECCEEEECc
Confidence 3344445557899999999999986 433335655 45443 899999993
No 148
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=80.91 E-value=1.6 Score=39.79 Aligned_cols=46 Identities=20% Similarity=0.073 Sum_probs=36.2
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+...+..++++++++.|.+++. .+++..|...++..+ .+|.|++|+
T Consensus 270 ~~~l~~~gi~~~~~~~v~~~~~--~~~~~~v~~~~~~~~-~~D~vLvAv 315 (542)
T 4b1b_A 270 KLYMEEQGVMFKNGILPKKLTK--MDDKILVEFSDKTSE-LYDTVLYAI 315 (542)
T ss_dssp HHHHHHTTCEEEETCCEEEEEE--ETTEEEEEETTSCEE-EESEEEECS
T ss_pred HHHHHhhcceeecceEEEEEEe--cCCeEEEEEcCCCeE-EEEEEEEcc
Confidence 3334445789999999999998 677888887777654 799999993
No 149
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=80.90 E-value=2.2 Score=37.98 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc-cCCC--ccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQ--SLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~-~~G~--~~~~~d~VIla~ 64 (259)
.+.+.+..++++++++.|..|+. +++.+.+.+ .+|+ . ..||+||+||
T Consensus 99 ~~~~~~~~gv~~~~~~~v~~i~~--~~~~v~v~~~~~g~~~~-~~~d~lviAt 148 (480)
T 3cgb_A 99 VKTFRDKYGIDAKVRHEVTKVDT--EKKIVYAEHTKTKDVFE-FSYDRLLIAT 148 (480)
T ss_dssp HHHHHHTTCCEEESSEEEEEEET--TTTEEEEEETTTCCEEE-EECSEEEECC
T ss_pred HHHHHhhcCCEEEeCCEEEEEEC--CCCEEEEEEcCCCceEE-EEcCEEEECC
Confidence 34455556788999999999987 666777765 4565 3 3899999994
No 150
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=80.68 E-value=1.2 Score=40.13 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=35.0
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCc---cccccEEEecC
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS---LGQFNGVVASD 64 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~---~~~~d~VIla~ 64 (259)
++..++...+..+++|++|+.|.+|+. ++........||+. .+.+|.||.|+
T Consensus 274 ~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~ 328 (502)
T 4g6h_A 274 LSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWAT 328 (502)
T ss_dssp HHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECC
T ss_pred HHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEcc
Confidence 344555566677999999999999975 32222334456641 23799999984
No 151
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=80.41 E-value=1.3 Score=38.90 Aligned_cols=47 Identities=30% Similarity=0.356 Sum_probs=33.5
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEec
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla 63 (259)
....+..+++|++++.|.+|+...+++++ .|.+.+|+.+ .+|.||+|
T Consensus 198 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i-~~D~Vv~a 245 (431)
T 1q1r_A 198 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRL-PADLVIAG 245 (431)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEE-ECSEEEEC
T ss_pred HHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEE-EcCEEEEC
Confidence 33444568899999999999851012344 6777788764 89999999
No 152
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=80.29 E-value=2.4 Score=38.77 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=29.8
Q ss_pred CCCCeeEcceEEEEEEeecCC-Cc---eEEEccCCCc-cccccEEEecCC
Q 024990 21 QPGVESKFGVGVGRFEWLEDK-NL---WSVSGLDGQS-LGQFNGVVASDK 65 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~-~~---~~v~~~~G~~-~~~~d~VIla~~ 65 (259)
..+++|+++++|.+|.. ++ ++ +.+.+.+|+. ...+|.||+|+-
T Consensus 267 ~~gv~i~~~t~v~~l~~--~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtG 314 (572)
T 1d4d_A 267 KRGTDIRLNSRVVRILE--DASGKVTGVLVKGEYTGYYVIKADAVVIAAG 314 (572)
T ss_dssp HTTCEEESSEEEEEEEE--C--CCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred HcCCeEEecCEEEEEEE--CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCC
Confidence 35899999999999986 44 43 3444336642 237999999953
No 153
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=80.28 E-value=1.4 Score=42.35 Aligned_cols=38 Identities=24% Similarity=0.125 Sum_probs=31.0
Q ss_pred CCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla 63 (259)
.+++|+++++|.+|+. +++++ .|.+.+| . ..+|+||+|
T Consensus 164 ~Gv~i~~~t~V~~i~~--~~~~v~~V~t~~G-~-i~Ad~VV~A 202 (830)
T 1pj5_A 164 AGVTYRGSTTVTGIEQ--SGGRVTGVQTADG-V-IPADIVVSC 202 (830)
T ss_dssp TTCEEECSCCEEEEEE--ETTEEEEEEETTE-E-EECSEEEEC
T ss_pred cCCEEECCceEEEEEE--eCCEEEEEEECCc-E-EECCEEEEC
Confidence 5789999999999997 55565 5777777 3 389999999
No 154
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=79.98 E-value=1.2 Score=39.60 Aligned_cols=51 Identities=24% Similarity=0.149 Sum_probs=37.2
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCC-CceEEEcc--CCCc-cccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDK-NLWSVSGL--DGQS-LGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~-~~~~v~~~--~G~~-~~~~d~VIla~ 64 (259)
..+.+.+.+.+.++|++++.|.+|+. ++ +++.+... +|+. ...+|.||+|+
T Consensus 214 ~~~~~~l~~~l~v~i~~~~~v~~i~~--~~~~~v~v~~~~~~G~~~~i~~D~vi~a~ 268 (466)
T 3l8k_A 214 QDIVNTLLSILKLNIKFNSPVTEVKK--IKDDEYEVIYSTKDGSKKSIFTNSVVLAA 268 (466)
T ss_dssp HHHHHHHHHHHCCCEECSCCEEEEEE--EETTEEEEEECCTTSCCEEEEESCEEECC
T ss_pred HHHHHHHHhcCEEEEEECCEEEEEEE--cCCCcEEEEEEecCCceEEEEcCEEEECc
Confidence 45566666555588899999999997 44 67777766 6651 23899999993
No 155
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=79.92 E-value=2.2 Score=35.52 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=29.2
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEcc---CCC-ccccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~---~G~-~~~~~d~VIla 63 (259)
+..++++++++.|.+|+. +++...|... +|+ ....+|.||+|
T Consensus 202 ~~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a 247 (335)
T 2zbw_A 202 EEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELALEVDAVLIL 247 (335)
T ss_dssp HTTSSEEETTEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred ccCCeEEecCCcceeEcc--CCCeeEEEEEECCCCceEEEecCEEEEe
Confidence 345889999999999997 5432234433 563 22389999999
No 156
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=79.83 E-value=2.3 Score=34.91 Aligned_cols=49 Identities=18% Similarity=0.056 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCce---EEEc-----c--CC---C-ccccccEEEec
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSG-----L--DG---Q-SLGQFNGVVAS 63 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~---~v~~-----~--~G---~-~~~~~d~VIla 63 (259)
.|.+++.+..+++|++++.|.+|.. +++++ .+.. . +| + ....+|.||+|
T Consensus 124 ~l~~~~~~~~gv~i~~~~~V~~i~~--~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~A 186 (284)
T 1rp0_A 124 TIMSKLLARPNVKLFNAVAAEDLIV--KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS 186 (284)
T ss_dssp HHHHHHHTSTTEEEEETEEEEEEEE--ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCEEEcCcEEEEEEe--cCCeEEEEEEeccccccccCccccCceEEEECCEEEEC
Confidence 4555555556789999999999987 44443 3321 1 22 1 22379999999
No 157
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=79.76 E-value=0.97 Score=39.19 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=31.5
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
...+.+..++++++++.|.+|+. + + |..++|+++ .+|.||++
T Consensus 224 ~~~~l~~~gV~~~~~~~v~~i~~--~--~--v~~~~g~~~-~~D~vi~a 265 (409)
T 3h8l_A 224 VASIYNQLGIKLVHNFKIKEIRE--H--E--IVDEKGNTI-PADITILL 265 (409)
T ss_dssp HHHHHHHHTCEEECSCCEEEECS--S--E--EEETTSCEE-ECSEEEEE
T ss_pred HHHHHHHCCCEEEcCCceEEECC--C--e--EEECCCCEE-eeeEEEEC
Confidence 33444456899999999999975 2 3 555678764 89999999
No 158
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=79.73 E-value=1.8 Score=37.04 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
|.+.+.+ .+++|+++++|.+|+. + + .|++.+|+.+ .+|.||.|+
T Consensus 113 L~~~~~~-~gv~i~~~~~v~~i~~--~--~-~v~~~~g~~~-~ad~vV~Ad 156 (379)
T 3alj_A 113 LVNRARA-LGVDISVNSEAVAADP--V--G-RLTLQTGEVL-EADLIVGAD 156 (379)
T ss_dssp HHHHHHH-TTCEEESSCCEEEEET--T--T-EEEETTSCEE-ECSEEEECC
T ss_pred HHHHHHh-cCCEEEeCCEEEEEEe--C--C-EEEECCCCEE-EcCEEEECC
Confidence 3444433 5789999999999985 3 4 7777788754 899999993
No 159
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=79.72 E-value=1.5 Score=36.33 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=30.2
Q ss_pred cCCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.|||-...+ .+..|+..|+.||+.|...|+
T Consensus 268 Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~ 306 (312)
T 4gcm_A 268 TSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIE 306 (312)
T ss_dssp CSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999987543 578899999999999977764
No 160
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=79.72 E-value=2.2 Score=38.37 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=33.3
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecC-CCce---EEEccCCC-cccccc-EEEecCCC
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLED-KNLW---SVSGLDGQ-SLGQFN-GVVASDKN 66 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~-~~~~---~v~~~~G~-~~~~~d-~VIla~~~ 66 (259)
.+.+.|.+ ..+++|+++++|.+|.. + ++++ .+.. +|+ ....+| .||+|+-+
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~--~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtGG 262 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVT--DDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGS 262 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEE--CTTCCEEEEEEEE-TTEEEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEE--CCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCCC
Confidence 56655544 35899999999999997 5 3433 3333 332 223796 99999543
No 161
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=79.69 E-value=2.6 Score=37.58 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla~ 64 (259)
.......+..+++|++++.|.+|+. ++ ++ .+.. +|+.+ .+|.||+|+
T Consensus 240 ~~l~~~l~~~GV~i~~~~~v~~i~~--~~-~v~~v~~-~g~~i-~~D~Vi~a~ 287 (490)
T 2bc0_A 240 DLMAKNMEEHGIQLAFGETVKEVAG--NG-KVEKIIT-DKNEY-DVDMVILAV 287 (490)
T ss_dssp HHHHHHHHTTTCEEEETCCEEEEEC--SS-SCCEEEE-SSCEE-ECSEEEECC
T ss_pred HHHHHHHHhCCeEEEeCCEEEEEEc--CC-cEEEEEE-CCcEE-ECCEEEECC
Confidence 3344445567899999999999985 43 33 3554 66554 899999993
No 162
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=78.81 E-value=2.3 Score=34.51 Aligned_cols=38 Identities=8% Similarity=-0.129 Sum_probs=30.1
Q ss_pred CCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 23 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++++. ++.|.+|++ ++++|.|++.+|+.+ .||+||+|+
T Consensus 71 ~v~~~-~~~v~~i~~--~~~~~~v~~~~g~~~-~~d~vviAt 108 (297)
T 3fbs_A 71 TIHWV-EGRVTDAKG--SFGEFIVEIDGGRRE-TAGRLILAM 108 (297)
T ss_dssp TEEEE-ESCEEEEEE--ETTEEEEEETTSCEE-EEEEEEECC
T ss_pred CeEEE-EeEEEEEEE--cCCeEEEEECCCCEE-EcCEEEECC
Confidence 45544 569999998 667899998888754 899999993
No 163
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=78.71 E-value=2.6 Score=38.03 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=30.7
Q ss_pred CCCCeeEcceEEEEEEeecCCCc--eEEEccCCCccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~--~~v~~~~G~~~~~~d~VIla 63 (259)
..+++++.+ .|.+|+. ++++ +.|++.+|+.+ .+|.||.|
T Consensus 177 ~~gv~~~~~-~v~~i~~--~~~g~~~~v~~~~g~~i-~ad~vV~A 217 (538)
T 2aqj_A 177 ERGVNRVVD-EVVDVRL--NNRGYISNLLTKEGRTL-EADLFIDC 217 (538)
T ss_dssp HTTCEEEEC-CEEEEEE--CTTSCEEEEEETTSCEE-CCSEEEEC
T ss_pred HCCCEEEEe-eEeEEEE--cCCCcEEEEEECCCcEE-EeCEEEEC
Confidence 357899999 8999987 5444 56777788654 89999999
No 164
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=77.73 E-value=1.9 Score=37.49 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=31.9
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+..+++++++++|..|+. + .++|++.+|+.+ .||+||+||
T Consensus 69 ~~~~~v~~~~~~~v~~i~~--~--~~~v~~~~g~~~-~~d~lviAt 109 (408)
T 2gqw_A 69 KRAPEVEWLLGVTAQSFDP--Q--AHTVALSDGRTL-PYGTLVLAT 109 (408)
T ss_dssp TTSCSCEEEETCCEEEEET--T--TTEEEETTSCEE-ECSEEEECC
T ss_pred HHHCCCEEEcCCEEEEEEC--C--CCEEEECCCCEE-ECCEEEECC
Confidence 3455788999999999986 3 356777778654 899999994
No 165
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=77.70 E-value=3.4 Score=37.20 Aligned_cols=38 Identities=8% Similarity=-0.143 Sum_probs=29.7
Q ss_pred CCCeeEcceEEEEEEeecCCCce--EEEccCCCccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLW--SVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~--~v~~~~G~~~~~~d~VIla 63 (259)
.+++|+++ .|.+|+. +++++ .|++.+|.. ..+|.||.|
T Consensus 189 ~Gv~i~~~-~v~~i~~--~~~g~~~~v~~~~g~~-i~ad~vV~A 228 (526)
T 2pyx_A 189 LGVTHIRD-HVSQIIN--NQHGDIEKLITKQNGE-ISGQLFIDC 228 (526)
T ss_dssp SCCEEEEC-CEEEEEE--CTTSCEEEEEESSSCE-EECSEEEEC
T ss_pred CCCEEEEe-EEEEEEe--cCCCcEEEEEECCCCE-EEcCEEEEC
Confidence 68899999 5999987 54554 566777765 489999999
No 166
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=77.63 E-value=3.7 Score=36.35 Aligned_cols=48 Identities=13% Similarity=-0.098 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCc--eEEEccC---C----CccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLD---G----QSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~--~~v~~~~---G----~~~~~~d~VIla~ 64 (259)
......+..+++|++++.|.+|+. ++++ +.+...+ | .. ..+|.||+|+
T Consensus 233 ~~~~~l~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~~~~g~~~g~~-~~~D~vi~a~ 289 (478)
T 3dk9_A 233 NCTEELENAGVEVLKFSQVKEVKK--TLSGLEVSMVTAVPGRLPVMTMI-PDVDCLLWAI 289 (478)
T ss_dssp HHHHHHHHTTCEEETTEEEEEEEE--CSSSEEEEEEECCTTSCCEEEEE-EEESEEEECS
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEE--cCCCcEEEEEEccCCCCcccceE-EEcCEEEEee
Confidence 344444556899999999999997 5555 5565554 2 33 3799999993
No 167
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=77.40 E-value=2.7 Score=35.14 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=30.2
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l 256 (259)
+..++||.+||-... .....|+.+|..||..|...|
T Consensus 278 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 278 TSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp CSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHh
Confidence 346789999998765 468899999999999988765
No 168
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=77.30 E-value=2.3 Score=37.65 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc-----CCCccccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL-----DGQSLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-----~G~~~~~~d~VIla~ 64 (259)
......+..+++|++++.|.+|+...+++++.++.. +|+. ..+|.||+|+
T Consensus 229 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~ 283 (478)
T 1v59_A 229 ATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQEN-LEAEVLLVAV 283 (478)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE-EEESEEEECS
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceE-EECCEEEECC
Confidence 334444556899999999999985112344666554 3344 3899999993
No 169
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=77.27 E-value=2.1 Score=37.22 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=33.4
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
........+..+++|++++.|.+|+ ++ .|++.+|+.+ .+|.||+|
T Consensus 190 ~~~l~~~l~~~GV~i~~~~~v~~i~---~~---~v~~~~g~~i-~~D~vi~a 234 (408)
T 2gqw_A 190 ADFVARYHAAQGVDLRFERSVTGSV---DG---VVLLDDGTRI-AADMVVVG 234 (408)
T ss_dssp HHHHHHHHHHTTCEEEESCCEEEEE---TT---EEEETTSCEE-ECSEEEEC
T ss_pred HHHHHHHHHHcCcEEEeCCEEEEEE---CC---EEEECCCCEE-EcCEEEEC
Confidence 3344444556789999999999997 22 5666788664 89999999
No 170
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=76.89 E-value=2 Score=39.25 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=34.1
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecCC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 65 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~~ 65 (259)
......+..+++|++++.|.+|+. ++++ |...+|+.+ .+|.||+|+-
T Consensus 233 ~l~~~l~~~GV~i~~~~~v~~i~~--~~~~--v~~~~g~~i-~~D~Vi~a~G 279 (588)
T 3ics_A 233 YVHEHMKNHDVELVFEDGVDALEE--NGAV--VRLKSGSVI-QTDMLILAIG 279 (588)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEG--GGTE--EEETTSCEE-ECSEEEECSC
T ss_pred HHHHHHHHcCCEEEECCeEEEEec--CCCE--EEECCCCEE-EcCEEEEccC
Confidence 334444556899999999999986 4444 555677664 8999999943
No 171
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=76.78 E-value=2.9 Score=37.91 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=33.7
Q ss_pred eEcceEEEEEEeecCCCceEEEccC---CC-ccccccEEEecCCCCCCcchhhhcC
Q 024990 26 SKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVASDKNVVSPRFRDVTG 77 (259)
Q Consensus 26 i~~~~~V~~I~~~~~~~~~~v~~~~---G~-~~~~~d~VIla~~~~p~~~a~~ll~ 77 (259)
|+++++|.+|+. ++++|+++..+ |+ ....+|.||.|+ =.....++.+.
T Consensus 152 v~~~~~v~~~~~--~~~~v~v~~~~~~~G~~~~i~a~~vVgAD--G~~S~vR~~lg 203 (549)
T 2r0c_A 152 LRTRSRLDSFEQ--RDDHVRATITDLRTGATRAVHARYLVACD--GASSPTRKALG 203 (549)
T ss_dssp EECSEEEEEEEE--CSSCEEEEEEETTTCCEEEEEEEEEEECC--CTTCHHHHHHT
T ss_pred cccCcEEEEEEE--eCCEEEEEEEECCCCCEEEEEeCEEEECC--CCCcHHHHHcC
Confidence 799999999998 77788887654 63 224899999994 22233445553
No 172
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=76.69 E-value=2.4 Score=37.11 Aligned_cols=73 Identities=5% Similarity=-0.041 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCCCCCceEeEeeccccCCC-CCcCCCCCeeecCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhh
Q 024990 178 AEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPA-ASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 178 ~~~l~~~~~~~~~~~~~p~~~~~~rW~~a~p~-~~~g~~~~~~~~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.+.+++.+.++++.+.... ..+.|.--.|. .+.+ .+.+-...++|+++. .+.+.++--|...|+.+|+.|...
T Consensus 345 ~~~l~~~~~~~~P~l~~~~--~~~~w~G~r~~~t~d~--~p~ig~~~~~l~~a~-G~~g~G~~~ap~~g~~la~~i~~~ 418 (448)
T 3axb_A 345 SLAILPILSLYLPQFQDAY--PSGGWAGHYDISFDAN--PVVFEPWESGIVVAA-GTSGSGIMKSDSIGRVAAAVALGM 418 (448)
T ss_dssp HHHTHHHHHHHCGGGTTCC--CSEEEEEEEEEETTSS--CEEECGGGCSEEEEE-CCTTCCGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcCcccCC--cccceEEEeccccCCC--CcEeeecCCCEEEEE-CCCchhHhHhHHHHHHHHHHHcCC
Confidence 4566666666655432211 12345322232 2211 222211126787764 344568888999999999988653
No 173
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=76.29 E-value=3.2 Score=34.26 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=31.6
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
...++||.+||-... ..+..|+..|..||..|...|.
T Consensus 278 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 278 TSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhh
Confidence 346789999998875 5789999999999999988874
No 174
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=76.28 E-value=1.4 Score=38.46 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=26.8
Q ss_pred cCCCCEEEeecC------CCCCChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDF------CVSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~ 254 (259)
..-++||+||+. ++|=.+..||.||..|++.+..
T Consensus 361 ~~~~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~~ 400 (401)
T 2gqf_A 361 NQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400 (401)
T ss_dssp SSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 357899999953 3334799999999999998743
No 175
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=76.21 E-value=3 Score=38.08 Aligned_cols=48 Identities=4% Similarity=0.120 Sum_probs=35.5
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc-cCCCc-cccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~-~~G~~-~~~~d~VIla~ 64 (259)
.+.+++..++++++++.|.+|+. +++.+.+.. .+|+. ...||+||+||
T Consensus 99 ~~~~~~~~gi~v~~~~~V~~id~--~~~~v~v~~~~~g~~~~~~~d~lviAt 148 (588)
T 3ics_A 99 VERMSKRFNLDIRVLSEVVKINK--EEKTITIKNVTTNETYNEAYDVLILSP 148 (588)
T ss_dssp HHHHHHHTTCEEECSEEEEEEET--TTTEEEEEETTTCCEEEEECSEEEECC
T ss_pred HHHHHHhcCcEEEECCEEEEEEC--CCCEEEEeecCCCCEEEEeCCEEEECC
Confidence 45555667888999999999998 667777764 34541 23799999993
No 176
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=75.76 E-value=1.7 Score=38.12 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.2
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
+..+++++.+ .|++|+. +++ +|++++|+.+ .||++|+|
T Consensus 67 ~~~gv~~i~~-~v~~Id~--~~~--~V~~~~g~~i-~YD~LViA 104 (430)
T 3hyw_A 67 PKFNIEFINE-KAESIDP--DAN--TVTTQSGKKI-EYDYLVIA 104 (430)
T ss_dssp GGGTEEEECS-CEEEEET--TTT--EEEETTCCEE-ECSEEEEC
T ss_pred HHCCcEEEEe-EEEEEEC--CCC--EEEECCCCEE-ECCEEEEe
Confidence 3446676655 7899987 554 5667788765 89999999
No 177
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=75.73 E-value=3.2 Score=34.04 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||-.... .+..|+.+|..||..|...|.
T Consensus 268 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 305 (310)
T 1fl2_A 268 NVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLI 305 (310)
T ss_dssp SSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHH
Confidence 357899999988754 789999999999999988763
No 178
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=75.60 E-value=2 Score=36.25 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=28.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCc---eEEEccCCC-ccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~-~~~~~d~VIla 63 (259)
..+++|++++.|.+|+. ++++ +.+...+|+ ....+|.||+|
T Consensus 214 ~~gv~i~~~~~v~~i~~--~~~~v~~v~~~~~~g~~~~i~~D~vi~a 258 (360)
T 3ab1_A 214 NGTIDVYLETEVASIEE--SNGVLTRVHLRSSDGSKWTVEADRLLIL 258 (360)
T ss_dssp HTSEEEESSEEEEEEEE--ETTEEEEEEEEETTCCEEEEECSEEEEC
T ss_pred cCceEEEcCcCHHHhcc--CCCceEEEEEEecCCCeEEEeCCEEEEC
Confidence 34689999999999997 4443 334333663 22489999999
No 179
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=75.49 E-value=1.5 Score=37.61 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=29.4
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..++++++++.|..|+. + .+.|+ .+|+.+ .||++|+||
T Consensus 72 ~~~v~~~~g~~v~~id~--~--~~~V~-~~g~~~-~~d~lViAT 109 (367)
T 1xhc_A 72 KRGIEIRLAEEAKLIDR--G--RKVVI-TEKGEV-PYDTLVLAT 109 (367)
T ss_dssp HHTEEEECSCCEEEEET--T--TTEEE-ESSCEE-ECSEEEECC
T ss_pred hCCcEEEECCEEEEEEC--C--CCEEE-ECCcEE-ECCEEEECC
Confidence 35678899999999986 3 35676 567654 899999994
No 180
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=75.35 E-value=3.2 Score=33.90 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=31.2
Q ss_pred cCCCCEEEeecCCC--CCChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~--g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
...++||.+||-.. ...+..|+..|+.||..|.+.|.
T Consensus 274 t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 312 (315)
T 3r9u_A 274 TSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYIE 312 (315)
T ss_dssp CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHHH
Confidence 35679999999864 35899999999999999998774
No 181
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=75.19 E-value=3.2 Score=34.30 Aligned_cols=41 Identities=7% Similarity=0.036 Sum_probs=31.0
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..++++++ ..|.+|+. ++++|.|.+ +|..+ .+|.||+|+
T Consensus 82 ~~~~~v~~~~-~~v~~i~~--~~~~~~v~~-~~~~~-~~~~li~At 122 (319)
T 3cty_A 82 AANYAKIREG-VEVRSIKK--TQGGFDIET-NDDTY-HAKYVIITT 122 (319)
T ss_dssp HHTTSEEEET-CCEEEEEE--ETTEEEEEE-SSSEE-EEEEEEECC
T ss_pred HHHcCCEEEE-eeEEEEEE--eCCEEEEEE-CCCEE-EeCEEEECC
Confidence 4456778888 78999987 566788876 55443 899999993
No 182
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=74.99 E-value=3 Score=37.04 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=31.1
Q ss_pred HHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
...+..+++|++++.|.+|+. +++.+.+.++++ . ..+|.||+|+
T Consensus 235 ~~l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~~~-~-i~~D~vi~a~ 278 (480)
T 3cgb_A 235 KEADKHHIEILTNENVKAFKG--NERVEAVETDKG-T-YKADLVLVSV 278 (480)
T ss_dssp HHHHHTTCEEECSCCEEEEEE--SSBEEEEEETTE-E-EECSEEEECS
T ss_pred HHHHHcCcEEEcCCEEEEEEc--CCcEEEEEECCC-E-EEcCEEEECc
Confidence 334456899999999999987 533334555444 4 3899999993
No 183
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=74.28 E-value=3.2 Score=36.70 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=29.6
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc-cCCC--ccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQ--SLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~-~~G~--~~~~~d~VIla~ 64 (259)
.+.+.+..++++++++.|.+|+. +++.|.+.+ .+|+ . ..||++|+||
T Consensus 72 ~~~~~~~~gi~~~~~~~V~~id~--~~~~v~~~~~~~g~~~~-~~~d~lviAt 121 (472)
T 3iwa_A 72 PEFFRINKDVEALVETRAHAIDR--AAHTVEIENLRTGERRT-LKYDKLVLAL 121 (472)
T ss_dssp ---------CEEECSEEEEEEET--TTTEEEEEETTTCCEEE-EECSEEEECC
T ss_pred HHHHhhhcCcEEEECCEEEEEEC--CCCEEEEeecCCCCEEE-EECCEEEEeC
Confidence 34445556788899999999997 666777764 3354 3 3899999993
No 184
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=74.17 E-value=4.2 Score=33.51 Aligned_cols=50 Identities=6% Similarity=0.044 Sum_probs=33.1
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC---CC-ccccccEEEec
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~---G~-~~~~~d~VIla 63 (259)
.....+.| +..++++++++.|.+|+. +++...|+..+ |+ ....+|.||+|
T Consensus 192 ~~~~~~~l-~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~~~~D~vv~a 245 (332)
T 3lzw_A 192 HEHSVENL-HASKVNVLTPFVPAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVN 245 (332)
T ss_dssp CHHHHHHH-HHSSCEEETTEEEEEEEC--SSSCCEEEEEETTSCCEEEEECSEEEEC
T ss_pred cHHHHHHH-hcCCeEEEeCceeeEEec--CCceEEEEEEecCCCceEEEECCEEEEe
Confidence 34444554 346889999999999987 44444454433 22 22379999999
No 185
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=74.14 E-value=4 Score=37.95 Aligned_cols=46 Identities=17% Similarity=-0.024 Sum_probs=32.6
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla~ 64 (259)
.+.+.+..+++| +++.|..|.. +++++ .|.+.+|..+ .+|.||+||
T Consensus 130 ~~~Le~~~GVeI-~~~~Vt~L~~--e~g~V~GV~t~dG~~i-~AdaVVLAT 176 (637)
T 2zxi_A 130 KKVCENQENLYI-KQEEVVDIIV--KNNQVVGVRTNLGVEY-KTKAVVVTT 176 (637)
T ss_dssp HHHHHTCTTEEE-EESCEEEEEE--SSSBEEEEEETTSCEE-ECSEEEECC
T ss_pred HHHHHhCCCCEE-EEeEEEEEEe--cCCEEEEEEECCCcEE-EeCEEEEcc
Confidence 333333347787 6789999987 55554 4777788664 899999994
No 186
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=74.08 E-value=2.2 Score=37.02 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+++++++++|..|+. +. ..|++.+|+.+ .||++|+||
T Consensus 69 ~~~i~~~~~~~v~~id~--~~--~~v~~~~g~~~-~~d~lvlAt 107 (410)
T 3ef6_A 69 EARIDMLTGPEVTALDV--QT--RTISLDDGTTL-SADAIVIAT 107 (410)
T ss_dssp HTTCEEEESCCEEEEET--TT--TEEEETTSCEE-ECSEEEECC
T ss_pred HCCCEEEeCCEEEEEEC--CC--CEEEECCCCEE-ECCEEEEcc
Confidence 35788999999999987 43 46777788764 899999993
No 187
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=74.04 E-value=2.2 Score=38.67 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=33.6
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEc-cCCCc-cccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~-~~G~~-~~~~d~VIla~ 64 (259)
+.+++..++++++++.|.+|+. +++.+.+.. .+|+. ...||+||+||
T Consensus 65 ~~~~~~~~i~~~~~~~V~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAt 113 (565)
T 3ntd_A 65 ESFKARFNVEVRVKHEVVAIDR--AAKLVTVRRLLDGSEYQESYDTLLLSP 113 (565)
T ss_dssp HHHHHHHCCEEETTEEEEEEET--TTTEEEEEETTTCCEEEEECSEEEECC
T ss_pred HHHHHhcCcEEEECCEEEEEEC--CCCEEEEEecCCCCeEEEECCEEEECC
Confidence 4445546788899999999998 666777764 23431 23899999993
No 188
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=73.22 E-value=4.5 Score=30.29 Aligned_cols=36 Identities=17% Similarity=-0.055 Sum_probs=30.0
Q ss_pred cCCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l 256 (259)
...++||.+||-.... ....|+..|..||+.|...+
T Consensus 133 t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 133 TSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp CSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHh
Confidence 3457899999987654 77899999999999998765
No 189
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=73.22 E-value=2.3 Score=36.82 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=27.0
Q ss_pred CCCEEEeecC------CCCCChhHHHHHHHHHHHHHHh
Q 024990 223 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 223 ~~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~ 254 (259)
.++|+++||. +.|.+++-|+++|..+|+.|..
T Consensus 302 ~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~ 339 (410)
T 3c96_A 302 RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR 339 (410)
T ss_dssp BTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhc
Confidence 3689999984 4577999999999999998864
No 190
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=72.90 E-value=1.6 Score=38.35 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=32.2
Q ss_pred HhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 18 LCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 18 La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+++..++++++++.|.+|+. +.+.|.+.+|.....||+||+||
T Consensus 68 ~~~~~gi~v~~~~~v~~i~~----~~~~v~~~~g~~~~~~d~lviAt 110 (449)
T 3kd9_A 68 FIKKRGIDLHLNAEVIEVDT----GYVRVRENGGEKSYEWDYLVFAN 110 (449)
T ss_dssp HHHHTTCEEETTCEEEEECS----SEEEEECSSSEEEEECSEEEECC
T ss_pred HHHhcCcEEEecCEEEEEec----CCCEEEECCceEEEEcCEEEECC
Confidence 33456789999999999975 35778777764224899999994
No 191
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=72.55 E-value=2.6 Score=36.88 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=31.1
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|..|+. +++ .|++.+|+.+ .||+||+||
T Consensus 71 ~~~gv~~~~~~~v~~i~~--~~~--~v~~~~g~~~-~~d~lviAt 110 (431)
T 1q1r_A 71 AAQNIQLLGGTQVTAINR--DRQ--QVILSDGRAL-DYDRLVLAT 110 (431)
T ss_dssp HHTTEEEECSCCEEEEET--TTT--EEEETTSCEE-ECSEEEECC
T ss_pred HhCCCEEEeCCEEEEEEC--CCC--EEEECCCCEE-ECCEEEEcC
Confidence 346788999999999987 443 5666677654 899999994
No 192
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=71.96 E-value=2.1 Score=38.37 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.++++++++.|.+|+. +. ++|++++|+.+ .||+||+||
T Consensus 103 ~gv~~~~g~~v~~id~--~~--~~V~~~~g~~i-~yd~lviAT 140 (493)
T 1m6i_A 103 GGVAVLTGKKVVQLDV--RD--NMVKLNDGSQI-TYEKCLIAT 140 (493)
T ss_dssp CEEEEEETCCEEEEEG--GG--TEEEETTSCEE-EEEEEEECC
T ss_pred CCeEEEcCCEEEEEEC--CC--CEEEECCCCEE-ECCEEEECC
Confidence 4678899999999987 33 46777788764 899999994
No 193
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=71.70 E-value=4 Score=33.78 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=32.3
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++..++++++++ |..|+. ++++|+|++ +|..+ .+|.||+|+
T Consensus 80 ~~~~gv~~~~~~-v~~i~~--~~~~~~v~~-~~~~~-~~~~vv~A~ 120 (333)
T 1vdc_A 80 SERFGTTIFTET-VTKVDF--SSKPFKLFT-DSKAI-LADAVILAI 120 (333)
T ss_dssp HHHTTCEEECCC-CCEEEC--SSSSEEEEC-SSEEE-EEEEEEECC
T ss_pred HHHCCCEEEEeE-EEEEEE--cCCEEEEEE-CCcEE-EcCEEEECC
Confidence 334578889987 999987 677899987 66554 899999993
No 194
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=71.29 E-value=2.3 Score=37.89 Aligned_cols=42 Identities=7% Similarity=0.144 Sum_probs=30.8
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEE-ccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVS-GLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~-~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|..|+. +++.|.+. +.++.. ..||+||+||
T Consensus 103 ~~~gv~v~~~~~v~~i~~--~~~~v~v~~~g~~~~-~~~d~lviAt 145 (490)
T 2bc0_A 103 ESLGAKVYMESPVQSIDY--DAKTVTALVDGKNHV-ETYDKLIFAT 145 (490)
T ss_dssp HHTTCEEETTCCEEEEET--TTTEEEEEETTEEEE-EECSEEEECC
T ss_pred HhCCCEEEeCCEEEEEEC--CCCEEEEEeCCcEEE-EECCEEEECC
Confidence 346788899999999987 66667775 322333 3899999993
No 195
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=71.04 E-value=2.8 Score=36.32 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=31.3
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+..++++++++.|..|+. +. +.|++.+|+.+ .||++|+||
T Consensus 76 ~~~~i~~~~~~~v~~id~--~~--~~v~~~~g~~~-~~d~lvlAt 115 (415)
T 3lxd_A 76 EDKAVEMKLGAEVVSLDP--AA--HTVKLGDGSAI-EYGKLIWAT 115 (415)
T ss_dssp HHTTEEEEETCCEEEEET--TT--TEEEETTSCEE-EEEEEEECC
T ss_pred HHCCcEEEeCCEEEEEEC--CC--CEEEECCCCEE-EeeEEEEcc
Confidence 346788999999999986 43 46777788764 899999994
No 196
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=70.98 E-value=7.1 Score=31.99 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=30.1
Q ss_pred ecCCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 024990 220 WDVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 220 ~~~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.+..++||.|||-...+ .+--|+.+|..||..|...|.
T Consensus 261 ~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~ 300 (304)
T 4fk1_A 261 RTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDIT 300 (304)
T ss_dssp BCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999976432 477899999999999988774
No 197
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=70.22 E-value=4.4 Score=35.37 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=34.9
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCC-ccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~-~~~~~d~VIla 63 (259)
..+.+.+.+..++++++++.|.+|+. ++..+++.+|+ ....+|.||++
T Consensus 203 ~~~l~~~l~~~GV~~~~~~~v~~v~~----~~~~~~~~~g~~~~i~~d~vi~~ 251 (430)
T 3hyw_A 203 KRLVEDLFAERNIDWIANVAVKAIEP----DKVIYEDLNGNTHEVPAKFTMFM 251 (430)
T ss_dssp HHHHHHHHHHTTCEEECSCEEEEECS----SEEEEECTTSCEEEEECSEEEEE
T ss_pred HHHHHHHHHhCCeEEEeCceEEEEeC----CceEEEeeCCCceEeecceEEEe
Confidence 34556666667999999999999975 45666665553 12389999999
No 198
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=69.37 E-value=13 Score=33.83 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=30.8
Q ss_pred CCCCEEEeecCCC-CCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~-g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.-.+||.|||..+ .++|-.|.-+|.++|+.|+.++.
T Consensus 507 ~~~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~~~~~ 543 (549)
T 3nlc_A 507 NLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIV 543 (549)
T ss_dssp TCBTEEECHHHHTSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCEEEccccCChhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999875 36899999999999999998763
No 199
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=69.19 E-value=4 Score=37.27 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=29.6
Q ss_pred cCCCCeeEcceEEEEEEeecCCCc-eEEEcc---CCCc-cccccEEEec
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNL-WSVSGL---DGQS-LGQFNGVVAS 63 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~---~G~~-~~~~d~VIla 63 (259)
...|++|+++++|.+|.. ++++ |.|+.. +|+. ...+|.||+|
T Consensus 199 ~~~Ga~i~~~t~V~~l~~--~~~~v~gV~~~d~~tg~~~~i~A~~VV~A 245 (571)
T 2rgh_A 199 AEDGAYLVSKMKAVGFLY--EGDQIVGVKARDLLTDEVIEIKAKLVINT 245 (571)
T ss_dssp HHTTCEEESSEEEEEEEE--ETTEEEEEEEEETTTCCEEEEEBSCEEEC
T ss_pred HHcCCeEEeccEEEEEEE--eCCEEEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 346889999999999997 4444 445532 3431 2489999999
No 200
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=69.06 E-value=6.4 Score=36.04 Aligned_cols=34 Identities=21% Similarity=-0.023 Sum_probs=28.7
Q ss_pred CCCEEEeecCCC------CCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++++++||... |.+++-|+++|..+|+.|...+
T Consensus 346 ~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~ 385 (584)
T 2gmh_A 346 FPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQL 385 (584)
T ss_dssp ETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHH
Confidence 368999999653 6699999999999999998754
No 201
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=68.41 E-value=5.9 Score=32.37 Aligned_cols=37 Identities=27% Similarity=0.230 Sum_probs=30.0
Q ss_pred cCCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 024990 221 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+..++||.|||-..++ .+--|+.+|..||..+.+.|+
T Consensus 274 Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~ 312 (314)
T 4a5l_A 274 TSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQ 312 (314)
T ss_dssp CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4467899999988765 466789999999999888774
No 202
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=68.19 E-value=4.5 Score=33.62 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=31.0
Q ss_pred eecCCCCEEEee--cCCC--CCChhHHHHHHHHHHHHHHhhhc
Q 024990 219 LWDVKRRLAICG--DFCV--SPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 219 ~~~~~~~l~laG--D~~~--g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
+....++||.+| |... ...+..|+..|+.+|+.|.+.|.
T Consensus 310 ~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~ 352 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCA 352 (357)
T ss_dssp BBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 345577999999 5553 34788999999999999998774
No 203
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=67.67 E-value=7.2 Score=34.63 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC---CCc-cccccEEEecC
Q 024990 13 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~---G~~-~~~~d~VIla~ 64 (259)
.......+..+++|++++.|.+|+.. +++.+.++..+ |+. ...+|.||+|+
T Consensus 229 ~~l~~~l~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~~~~g~~~~~~~D~vi~a~ 283 (488)
T 3dgz_A 229 SLVTEHMESHGTQFLKGCVPSHIKKL-PTNQLQVTWEDHASGKEDTGTFDTVLWAI 283 (488)
T ss_dssp HHHHHHHHHTTCEEEETEEEEEEEEC-TTSCEEEEEEETTTTEEEEEEESEEEECS
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEEeCCCCeeEEEECCEEEEcc
Confidence 33344445568999999999999861 23445565443 542 13799999993
No 204
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=67.64 E-value=5.9 Score=36.93 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=28.1
Q ss_pred CCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
..++||+||...+..+.|-|+.+|+.|+......
T Consensus 383 ~~~gLf~AGqinGttGYeEAaaqGl~AG~nAa~~ 416 (651)
T 3ces_A 383 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARL 416 (651)
T ss_dssp SSBTEEECSGGGTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEecCCcChHHHHHHHHHHHHHHHHH
Confidence 4579999999988889999999999987655443
No 205
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=67.55 E-value=3.6 Score=35.88 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=32.8
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC--CCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD--GQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~--G~~~~~~d~VIla 63 (259)
....+...+..+++|++++.|.+|+. ++.+++..+ |+++ .+|.||++
T Consensus 203 ~~~l~~~l~~~GV~i~~~~~v~~v~~----~~v~~~~~~~~g~~i-~~D~vv~a 251 (430)
T 3h28_A 203 KRLVEDLFAERNIDWIANVAVKAIEP----DKVIYEDLNGNTHEV-PAKFTMFM 251 (430)
T ss_dssp HHHHHHHHHHTTCEEECSCEEEEECS----SEEEEECTTSCEEEE-ECSEEEEE
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEeC----CeEEEEecCCCceEE-eeeEEEEC
Confidence 34444555567899999999999975 345555322 4443 89999999
No 206
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=67.48 E-value=5.2 Score=35.42 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=30.8
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l 256 (259)
+..++||.+||-..+. .+-.|+..|+.||+.|...|
T Consensus 407 Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~~L 443 (456)
T 2vdc_G 407 TNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYA 443 (456)
T ss_dssp CSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999987765 68999999999999998876
No 207
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=67.25 E-value=6.2 Score=32.80 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=31.6
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEE-EccCCCccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v-~~~~G~~~~~~d~VIla~ 64 (259)
++..++++++++ |.+|+. ++.|+| .+.+|+.+ .||+||+|+
T Consensus 81 ~~~~~v~~~~~~-v~~i~~---~~~~~v~~~~~g~~~-~~d~lviAt 122 (335)
T 2a87_A 81 ALRFGADLRMED-VESVSL---HGPLKSVVTADGQTH-RARAVILAM 122 (335)
T ss_dssp HHHTTCEEECCC-EEEEEC---SSSSEEEEETTSCEE-EEEEEEECC
T ss_pred HHHcCCEEEEee-EEEEEe---CCcEEEEEeCCCCEE-EeCEEEECC
Confidence 444678889987 888986 356888 77777654 899999993
No 208
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=67.15 E-value=5.6 Score=37.00 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=29.0
Q ss_pred CCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
..++||+||+..+..+.+-|+.+|..|+..+...
T Consensus 377 ~~~gLf~AGqi~g~~Gy~eA~a~G~~AG~naa~~ 410 (641)
T 3cp8_A 377 PVENLFFAGQINGTSGYEEAAAQGLMAGINAVRK 410 (641)
T ss_dssp SSBTEEECSGGGTBCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCEEEEEeecCCccHHHHHHHHHHHHHHHHHH
Confidence 4679999999998889999999999998766554
No 209
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=66.86 E-value=4.4 Score=36.93 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=29.5
Q ss_pred CCCCeeEcceEEEEEEeecCCCc-eEEEccC---CC-ccccccEEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLD---GQ-SLGQFNGVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~-~~v~~~~---G~-~~~~~d~VIla 63 (259)
..|++|+++++|.+|.. ++++ |.|+..+ |+ ....+|.||+|
T Consensus 182 ~~G~~i~~~~~V~~l~~--~~g~v~gV~~~d~~tg~~~~i~A~~VV~A 227 (561)
T 3da1_A 182 ARGAVALNYMKVESFIY--DQGKVVGVVAKDRLTDTTHTIYAKKVVNA 227 (561)
T ss_dssp HTTCEEEESEEEEEEEE--ETTEEEEEEEEETTTCCEEEEEEEEEEEC
T ss_pred HcCCEEEcCCEEEEEEE--cCCeEEEEEEEEcCCCceEEEECCEEEEC
Confidence 35899999999999998 5555 4455432 42 12389999999
No 210
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=66.85 E-value=5.2 Score=35.27 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=30.0
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEccCC--CccccccEEEecC
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--QSLGQFNGVVASD 64 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G--~~~~~~d~VIla~ 64 (259)
.+..+++|++++.|.+|+. +++.++..+| +. ..+|.||+|+
T Consensus 222 l~~~gv~i~~~~~v~~i~~----~~v~v~~~~G~~~~-i~~D~vv~a~ 264 (458)
T 1lvl_A 222 LKKLGIALHLGHSVEGYEN----GCLLANDGKGGQLR-LEADRVLVAV 264 (458)
T ss_dssp HHHHTCEEETTCEEEEEET----TEEEEECSSSCCCE-ECCSCEEECC
T ss_pred HHHCCCEEEECCEEEEEEe----CCEEEEECCCceEE-EECCEEEECc
Confidence 3445789999999999974 2366764456 34 3899999993
No 211
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=66.74 E-value=6.5 Score=34.41 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=30.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEc-cCCCc-cccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~-~~G~~-~~~~d~VIla~ 64 (259)
..++++++++.|..|+. +++.+.+.+ .+|+. ...||++|+||
T Consensus 68 ~~gv~~~~~~~v~~i~~--~~~~v~~~~~~~g~~~~~~~d~lviAt 111 (447)
T 1nhp_A 68 SRGVNVFSNTEITAIQP--KEHQVTVKDLVSGEERVENYDKLIISP 111 (447)
T ss_dssp HTTCEEEETEEEEEEET--TTTEEEEEETTTCCEEEEECSEEEECC
T ss_pred HCCCEEEECCEEEEEeC--CCCEEEEEecCCCceEEEeCCEEEEcC
Confidence 35788899999999987 666666654 34642 13799999993
No 212
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=66.63 E-value=3.4 Score=36.74 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=31.5
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCce---EEEccCCCccccccEEEecC
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~---~v~~~~G~~~~~~d~VIla~ 64 (259)
..|.+++ +..+++|++++.| +|.. +++++ .+.+.+|+ + .+|.||+||
T Consensus 123 ~~L~~~~-~~~gv~i~~~~~v-~l~~--~~~~v~Gv~v~~~~g~-~-~a~~VVlAt 172 (472)
T 2e5v_A 123 NFLLKLA-REEGIPIIEDRLV-EIRV--KDGKVTGFVTEKRGLV-E-DVDKLVLAT 172 (472)
T ss_dssp HHHHHHH-HHTTCCEECCCEE-EEEE--ETTEEEEEEETTTEEE-C-CCSEEEECC
T ss_pred HHHHHHH-HhCCCEEEECcEE-EEEE--eCCEEEEEEEEeCCCe-E-EeeeEEECC
Confidence 3344444 4567899999999 9986 44443 44444454 3 699999994
No 213
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=65.24 E-value=7.7 Score=33.98 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=34.6
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+........+..++++++++.|.+++. + .++..+|+.+ .+|.||+|+
T Consensus 190 ~~~~~~~~l~~~gV~i~~~~~v~~~~~----~--~v~~~~g~~~-~~D~vl~a~ 236 (437)
T 4eqs_A 190 MNQPILDELDKREIPYRLNEEINAING----N--EITFKSGKVE-HYDMIIEGV 236 (437)
T ss_dssp GGHHHHHHHHHTTCCEEESCCEEEEET----T--EEEETTSCEE-ECSEEEECC
T ss_pred hHHHHHHHhhccceEEEeccEEEEecC----C--eeeecCCeEE-eeeeEEEEe
Confidence 344555555567889999999998874 2 3556788764 899999993
No 214
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=64.57 E-value=3.9 Score=35.95 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=28.1
Q ss_pred CCCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFC------VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.-++||+||+.+ +|-++..||.||+.|++.+.+...
T Consensus 403 ~i~GLy~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa~~~~ 444 (447)
T 2i0z_A 403 FTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENAK 444 (447)
T ss_dssp SSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 577999999533 233799999999999998876543
No 215
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=62.91 E-value=12 Score=34.27 Aligned_cols=41 Identities=5% Similarity=-0.210 Sum_probs=28.7
Q ss_pred CCCeeEcceEEEEEEeecC-CCce---EEEc-cCCCc-cccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLED-KNLW---SVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~-~~~~---~v~~-~~G~~-~~~~d~VIla~ 64 (259)
.+++|++++.|.+|.. + ++++ .+.+ .+|+. ...++.||+|+
T Consensus 156 ~gv~i~~~~~v~~L~~--~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAt 202 (588)
T 2wdq_A 156 NHTTIFSEWYALDLVK--NQDGAVVGCTALCIETGEVVYFKARATVLAT 202 (588)
T ss_dssp TTCEEEETEEEEEEEE--CTTSCEEEEEEEETTTCCEEEEEEEEEEECC
T ss_pred CCCEEEeCcEEEEEEE--CCCCEEEEEEEEEcCCCeEEEEEcCEEEECC
Confidence 4899999999999987 4 3433 3332 46652 23799999993
No 216
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=62.88 E-value=5 Score=37.54 Aligned_cols=47 Identities=13% Similarity=-0.083 Sum_probs=32.0
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc---cCCCccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~---~~G~~~~~~d~VIla 63 (259)
.......++..+++|+++++|.+|+. + +..+.. .+++. ..+|.||+|
T Consensus 570 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~--~~~v~~~~~~~~~~-i~aD~VV~A 619 (690)
T 3k30_A 570 VNRIQRRLIENGVARVTDHAVVAVGA--G--GVTVRDTYASIERE-LECDAVVMV 619 (690)
T ss_dssp HHHHHHHHHHTTCEEEESEEEEEEET--T--EEEEEETTTCCEEE-EECSEEEEE
T ss_pred HHHHHHHHHHCCCEEEcCcEEEEEEC--C--eEEEEEccCCeEEE-EECCEEEEC
Confidence 33444445567899999999999985 3 344432 23434 389999999
No 217
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=62.62 E-value=4.5 Score=33.27 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=25.4
Q ss_pred EcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 27 KFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 27 ~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+..|..+... +.+.+++.+.+|+.+ .||+||+||
T Consensus 78 ~~~~~~~~~~~~-~~~~~~v~~~~g~~~-~a~~liiAT 113 (304)
T 4fk1_A 78 YYEKTVVMITKQ-STGLFEIVTKDHTKY-LAERVLLAT 113 (304)
T ss_dssp EEECCEEEEEEC-TTSCEEEEETTCCEE-EEEEEEECC
T ss_pred EEeeEEEEeeec-CCCcEEEEECCCCEE-EeCEEEEcc
Confidence 444555556552 455688888888775 899999993
No 218
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=61.46 E-value=3.3 Score=36.25 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=23.9
Q ss_pred cCCCCEEEeecCC-----CCC-ChhHHHHHHHHHHHH
Q 024990 221 DVKRRLAICGDFC-----VSP-NVEGAILSGLDAASK 251 (259)
Q Consensus 221 ~~~~~l~laGD~~-----~g~-~ie~A~~SG~~aA~~ 251 (259)
..-++||+||+.+ .|+ .+.-||.||..|++.
T Consensus 380 k~~~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~ 416 (417)
T 3v76_A 380 KEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQD 416 (417)
T ss_dssp TTSTTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCc
Confidence 3567999999432 344 799999999988875
No 219
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=60.93 E-value=12 Score=34.50 Aligned_cols=50 Identities=10% Similarity=-0.110 Sum_probs=32.8
Q ss_pred HHHHHHhc---CCCCeeEcceEEEEEEeecCCCc---eEEEc-cCCCc-cccccEEEecC
Q 024990 13 SICKALCH---QPGVESKFGVGVGRFEWLEDKNL---WSVSG-LDGQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~---~l~~~i~~~~~V~~I~~~~~~~~---~~v~~-~~G~~-~~~~d~VIla~ 64 (259)
.+.+.|.+ ..+++|++++.|.+|.. ++++ +.+.+ .+|+. ...+++||+||
T Consensus 156 ~l~~~L~~~~~~~gv~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAT 213 (621)
T 2h88_A 156 SLLHTLYGRSLRYDTSYFVEYFALDLLM--ENGECRGVIALCIEDGTIHRFRAKNTVIAT 213 (621)
T ss_dssp HHHHHHHHHHTTSCCEEEETEEEEEEEE--ETTEEEEEEEEETTTCCEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCCEEEEceEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCeEEECC
Confidence 44444433 35789999999999986 4443 33333 46652 23799999993
No 220
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=60.85 E-value=9.3 Score=33.29 Aligned_cols=36 Identities=11% Similarity=-0.126 Sum_probs=29.8
Q ss_pred CCCCEEEeecCCCCC-------------ChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVSP-------------NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-------------~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||-.... ....|...|..+|+.|.+.|.
T Consensus 296 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~ 344 (437)
T 3sx6_A 296 KYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLE 344 (437)
T ss_dssp SCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999976532 577899999999999998763
No 221
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=60.74 E-value=7.9 Score=33.85 Aligned_cols=45 Identities=9% Similarity=-0.035 Sum_probs=30.3
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
.+...+.. +++++++.|.+|+. ++ ++.....+|+.+ .+|.||+|+
T Consensus 196 l~~~l~~~-v~i~~~~~v~~i~~--~~-~v~~v~~~g~~i-~~D~Vv~a~ 240 (449)
T 3kd9_A 196 LEEKLKKH-VNLRLQEITMKIEG--EE-RVEKVVTDAGEY-KAELVILAT 240 (449)
T ss_dssp HHHHHTTT-SEEEESCCEEEEEC--SS-SCCEEEETTEEE-ECSEEEECS
T ss_pred HHHHHHhC-cEEEeCCeEEEEec--cC-cEEEEEeCCCEE-ECCEEEEee
Confidence 33333444 89999999999986 43 443223456554 899999994
No 222
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=60.37 E-value=6.1 Score=34.65 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=30.7
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEE-ccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVS-GLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~-~~~G~~~~~~d~VIla~ 64 (259)
..++++++++.|.+|+. +++.|.+. ..++.. ..||++|+||
T Consensus 70 ~~gi~~~~~~~V~~id~--~~~~v~v~~~~~~~~-~~~d~lviAt 111 (452)
T 3oc4_A 70 RQKIQLLLNREVVAMDV--ENQLIAWTRKEEQQW-YSYDKLILAT 111 (452)
T ss_dssp HTTEEEECSCEEEEEET--TTTEEEEEETTEEEE-EECSEEEECC
T ss_pred HCCCEEEECCEEEEEEC--CCCEEEEEecCceEE-EEcCEEEECC
Confidence 35678899999999998 66777775 223434 3899999993
No 223
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=58.91 E-value=11 Score=34.72 Aligned_cols=41 Identities=15% Similarity=-0.083 Sum_probs=28.9
Q ss_pred CC-CeeEcceEEEEEEeecCCCc---eEEE-ccCCCc-cccccEEEecC
Q 024990 22 PG-VESKFGVGVGRFEWLEDKNL---WSVS-GLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 22 l~-~~i~~~~~V~~I~~~~~~~~---~~v~-~~~G~~-~~~~d~VIla~ 64 (259)
.+ ++|++++.|.+|.. ++++ +.+. ..+|+. ...++.||+|+
T Consensus 147 ~gnv~i~~~~~v~~l~~--~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAt 193 (602)
T 1kf6_A 147 FPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMAT 193 (602)
T ss_dssp CTTEEEEETEEEEEEEE--ETTEEEEEEEEETTTTEEEEEECSCEEECC
T ss_pred CCCcEEEeCCEEEEEEE--eCCEEEEEEEEEcCCCcEEEEEcCeEEECC
Confidence 45 89999999999987 4443 3333 356751 23799999993
No 224
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=58.18 E-value=9.4 Score=35.48 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=33.3
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCC-ccccccEEEec
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVAS 63 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~-~~~~~d~VIla 63 (259)
+.+.+...+..+++|++++.|.+|+. +++.++ .+|+ ....+|.||+|
T Consensus 576 ~~~~~~~l~~~GV~v~~~~~v~~i~~----~~v~~~-~~G~~~~i~~D~Vi~a 623 (671)
T 1ps9_A 576 GWIHRTTLLSRGVKMIPGVSYQKIDD----DGLHVV-INGETQVLAVDNVVIC 623 (671)
T ss_dssp HHHHHHHHHHTTCEEECSCEEEEEET----TEEEEE-ETTEEEEECCSEEEEC
T ss_pred HHHHHHHHHhcCCEEEeCcEEEEEeC----CeEEEe-cCCeEEEEeCCEEEEC
Confidence 34445555567899999999999974 356664 4663 22489999999
No 225
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=57.86 E-value=6.8 Score=31.99 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=29.5
Q ss_pred CCEEEeecCC--------CCCChhHHHHHHHHHHHHHHhhhcc
Q 024990 224 RRLAICGDFC--------VSPNVEGAILSGLDAASKLTEILSC 258 (259)
Q Consensus 224 ~~l~laGD~~--------~g~~ie~A~~SG~~aA~~l~~~l~~ 258 (259)
++++.+|+.. .++.+.+++.||..+|..+.++|++
T Consensus 234 p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~ 276 (284)
T 1rp0_A 234 PGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGL 276 (284)
T ss_dssp TTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhh
Confidence 6899999643 3578999999999999999998854
No 226
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=57.12 E-value=10 Score=33.05 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=33.1
Q ss_pred chHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEc--cCC-----CccccccEEEec
Q 024990 11 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDG-----QSLGQFNGVVAS 63 (259)
Q Consensus 11 m~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~--~~G-----~~~~~~d~VIla 63 (259)
+....+...+..++++++++.|.+|+. ++..++. .+| .+ ..+|.||++
T Consensus 210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~----~~v~~~~~~~~g~~~~~~~-i~~D~vv~~ 264 (437)
T 3sx6_A 210 SKGILTKGLKEEGIEAYTNCKVTKVED----NKMYVTQVDEKGETIKEMV-LPVKFGMMI 264 (437)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEET----TEEEEEEECTTSCEEEEEE-EECSEEEEE
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEC----CeEEEEecccCCccccceE-EEEeEEEEc
Confidence 344555555667899999999999975 3455543 343 33 389999999
No 227
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=57.09 E-value=11 Score=33.91 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||-.... .+..|+.+|..||..|...|.
T Consensus 479 s~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L~ 516 (521)
T 1hyu_A 479 SVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLI 516 (521)
T ss_dssp SSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHHH
Confidence 457899999988754 689999999999999988764
No 228
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=56.96 E-value=7.5 Score=34.04 Aligned_cols=42 Identities=10% Similarity=0.205 Sum_probs=30.6
Q ss_pred cCCCCeeEcceEEEEEEeecCCCceEEEcc-C--CCccccccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKNLWSVSGL-D--GQSLGQFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-~--G~~~~~~d~VIla~ 64 (259)
+..++++++++.|..|+. +++.+.+.+. + +.. ..||++|+|+
T Consensus 69 ~~~gv~~~~~~~v~~i~~--~~~~v~v~~~~~g~~~~-~~~d~lviAt 113 (452)
T 2cdu_A 69 SNLGANVQMRHQVTNVDP--ETKTIKVKDLITNEEKT-EAYDKLIMTT 113 (452)
T ss_dssp HHTTCEEEESEEEEEEEG--GGTEEEEEETTTCCEEE-EECSEEEECC
T ss_pred HHcCCEEEeCCEEEEEEc--CCCEEEEEecCCCceEE-EECCEEEEcc
Confidence 346788899999999987 5566777542 2 233 3899999993
No 229
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=56.59 E-value=10 Score=33.86 Aligned_cols=35 Identities=3% Similarity=-0.109 Sum_probs=24.7
Q ss_pred CCCCEEEeecCCC-----CCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFCV-----SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~~-----g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.-.+|++++-.+. +-..--.+-=|+++|+.|+++.
T Consensus 461 Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~ 500 (504)
T 1n4w_A 461 GYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500 (504)
T ss_dssp TCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEeeccccCCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence 4568999986543 2245667778889999998754
No 230
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=55.51 E-value=10 Score=34.01 Aligned_cols=40 Identities=8% Similarity=-0.089 Sum_probs=27.0
Q ss_pred CCCeeEcceEEEEEEeecCC-Cc--eEEEc--cCCC----ccccccEEEec
Q 024990 22 PGVESKFGVGVGRFEWLEDK-NL--WSVSG--LDGQ----SLGQFNGVVAS 63 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~-~~--~~v~~--~~G~----~~~~~d~VIla 63 (259)
-+++|++++.|.+|.. ++ ++ +-|.. .+|. ....++.||||
T Consensus 240 ~n~~i~~~~~v~~i~~--~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIla 288 (507)
T 1coy_A 240 GKLTITTLHRVTKVAP--ATGSGYSVTMEQIDEQGNVVATKVVTADRVFFA 288 (507)
T ss_dssp TCEEEECSEEEEEEEE--CSSSSEEEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred CCcEEEeCCEEEEEEE--CCCCCEEEEEEEeCCCCcccccEEEEeCEEEEc
Confidence 3589999999999998 44 22 22333 2552 22378999999
No 231
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=54.44 E-value=15 Score=32.31 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.0
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~~ 255 (259)
...++||.+||-... .....|+..|+.||+.|...
T Consensus 298 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 298 TNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp CSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 346789999998875 46788999999999999753
No 232
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=54.42 E-value=6.2 Score=33.68 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEec
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 63 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla 63 (259)
......+..+++|++++.|.+|+. ++ |+.++|+ + .+|.||+|
T Consensus 188 ~l~~~l~~~gV~i~~~~~v~~i~~----~~--v~~~~g~-i-~~D~vi~a 229 (367)
T 1xhc_A 188 MIKDMLEETGVKFFLNSELLEANE----EG--VLTNSGF-I-EGKVKICA 229 (367)
T ss_dssp HHHHHHHHTTEEEECSCCEEEECS----SE--EEETTEE-E-ECSCEEEE
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEe----eE--EEECCCE-E-EcCEEEEC
Confidence 334444556899999999999973 23 5556776 4 89999999
No 233
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=54.29 E-value=8.4 Score=34.89 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.2
Q ss_pred cCCCCEEEeecCCC----------CCChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCV----------SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~----------g~~ie~A~~SG~~aA~~l~~~l 256 (259)
..-++||.||+-.. |.++-.|+-.|+.|++.+.+.+
T Consensus 365 t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 410 (540)
T 1chu_A 365 TDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRM 410 (540)
T ss_dssp CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHhc
Confidence 45679999998542 2268889999999999886643
No 234
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=53.12 E-value=17 Score=33.90 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=32.8
Q ss_pred HHHHHHhcC---CCCeeEcceEEEEEEeecCCCc---eEEE-ccCCCc-cccccEEEecC
Q 024990 13 SICKALCHQ---PGVESKFGVGVGRFEWLEDKNL---WSVS-GLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~---l~~~i~~~~~V~~I~~~~~~~~---~~v~-~~~G~~-~~~~d~VIla~ 64 (259)
.|.+.|.+. .+++|+.++.|.+|.. ++++ +.+. +.+|+. ...+++||+||
T Consensus 159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~--~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAT 216 (660)
T 2bs2_A 159 TMLFAVANECLKLGVSIQDRKEAIALIH--QDGKCYGAVVRDLVTGDIIAYVAKGTLIAT 216 (660)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEE--ETTEEEEEEEEETTTCCEEEEECSEEEECC
T ss_pred HHHHHHHHHHHhCCCEEEECcEEEEEEe--cCCEEEEEEEEECCCCcEEEEEcCEEEEcc
Confidence 444544433 4789999999999986 4443 3333 256652 13799999994
No 235
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=52.44 E-value=13 Score=32.56 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=27.9
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ...-|+..|+.||+.|..
T Consensus 298 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 298 TSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAG 332 (455)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTS
T ss_pred cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 3467899999988754 467899999999999864
No 236
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=52.09 E-value=16 Score=31.30 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=30.0
Q ss_pred CCCCEEEeecCCC---CCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~~l 256 (259)
..++||.+||-.. ......|...|..+|+.|...+
T Consensus 298 ~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 298 KYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp SCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999875 3467899999999999998877
No 237
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=51.85 E-value=11 Score=32.49 Aligned_cols=38 Identities=8% Similarity=0.136 Sum_probs=29.1
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..++++++ ++|.+|+. ++. .|++.+|+.+ .||++|+||
T Consensus 69 ~~~i~~~~-~~v~~id~--~~~--~v~~~~g~~~-~~d~lvlAt 106 (404)
T 3fg2_P 69 DQAIELIS-DRMVSIDR--EGR--KLLLASGTAI-EYGHLVLAT 106 (404)
T ss_dssp HTTEEEEC-CCEEEEET--TTT--EEEESSSCEE-ECSEEEECC
T ss_pred hCCCEEEE-EEEEEEEC--CCC--EEEECCCCEE-ECCEEEEee
Confidence 35678888 99999987 443 5666788664 899999993
No 238
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=50.68 E-value=15 Score=32.13 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=30.8
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccC-CC-ccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQ-SLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~-G~-~~~~~d~VIla~ 64 (259)
+.+.+..++++++++.|.+|+. ......+.... ++ ....||++|+||
T Consensus 64 ~~~~~~~~i~~~~~~~V~~id~--~~~~~~~~~~~~~~~~~~~yd~lVIAT 112 (437)
T 4eqs_A 64 EKFYDRKQITVKTYHEVIAIND--ERQTVSVLNRKTNEQFEESYDKLILSP 112 (437)
T ss_dssp HHHHHHHCCEEEETEEEEEEET--TTTEEEEEETTTTEEEEEECSEEEECC
T ss_pred HHHHHhcCCEEEeCCeEEEEEc--cCcEEEEEeccCCceEEEEcCEEEECC
Confidence 3444455778899999999987 55555554322 21 113799999993
No 239
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=49.34 E-value=18 Score=32.10 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=30.5
Q ss_pred CCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 223 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 223 ~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
.++||.+||-.....+..|+..|+.||+.|...++
T Consensus 343 ~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~lg 377 (493)
T 1y56_A 343 KDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEFG 377 (493)
T ss_dssp ETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHcC
Confidence 45799999988777899999999999999987653
No 240
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=49.00 E-value=15 Score=32.27 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=28.2
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ....|++.|+.||+.|..
T Consensus 299 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 299 TNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 3467899999987654 467899999999999875
No 241
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=48.09 E-value=8.1 Score=32.98 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=30.9
Q ss_pred HHHhcCCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 16 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 16 ~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
+.+++..++++++++.|..|+. ++ +.|+..++ .+ .||++|+||
T Consensus 67 ~~~~~~~~v~~~~~~~v~~i~~--~~--~~v~~~~~-~~-~~d~lviAt 109 (384)
T 2v3a_A 67 GAMAEQLNARILTHTRVTGIDP--GH--QRIWIGEE-EV-RYRDLVLAW 109 (384)
T ss_dssp HHHHHHTTCEEECSCCCCEEEG--GG--TEEEETTE-EE-ECSEEEECC
T ss_pred HHHHHhCCcEEEeCCEEEEEEC--CC--CEEEECCc-EE-ECCEEEEeC
Confidence 4445556788899999999986 33 45655554 33 899999993
No 242
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=47.85 E-value=9 Score=35.78 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++||.+||......+..|+..|..||+.|...|
T Consensus 641 ~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l 674 (690)
T 3k30_A 641 IASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVL 674 (690)
T ss_dssp CSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence 4789999999988899999999999999998764
No 243
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=46.68 E-value=20 Score=31.26 Aligned_cols=40 Identities=13% Similarity=-0.092 Sum_probs=29.8
Q ss_pred CCCeeEcceEEEEEEeecCCCceE-EEc--c-CCC--ccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLWS-VSG--L-DGQ--SLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~~-v~~--~-~G~--~~~~~d~VIla~ 64 (259)
.+++|+++++|.+|.. +++++. |+. . +|+ . ..+|.||.|+
T Consensus 113 ~gv~i~~~~~v~~i~~--~~~~v~gv~~~~~~~G~~~~-~~ad~VV~Ad 158 (453)
T 3atr_A 113 RGVEIWDLTTAMKPIF--EDGYVKGAVLFNRRTNEELT-VYSKVVVEAT 158 (453)
T ss_dssp TTCEEESSEEEEEEEE--ETTEEEEEEEEETTTTEEEE-EECSEEEECC
T ss_pred cCCEEEeCcEEEEEEE--ECCEEEEEEEEEcCCCceEE-EEcCEEEECc
Confidence 5789999999999997 555643 433 2 664 3 3899999994
No 244
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=46.37 E-value=21 Score=31.28 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ....|+..|+.||+.|..
T Consensus 315 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 315 SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 4467899999988754 577899999999999875
No 245
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=46.08 E-value=12 Score=32.87 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=28.0
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-.... ...-|+..|+.||+.|..
T Consensus 307 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 307 TNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp CSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 3467899999988654 467799999999999875
No 246
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=44.19 E-value=25 Score=30.33 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=30.0
Q ss_pred CCCCEEEeecCCCCC-------------ChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVSP-------------NVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-------------~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||-.... ....|+..|..+|+.|...|.
T Consensus 285 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~ 333 (430)
T 3h28_A 285 TYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp SSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 578999999977532 578899999999999998763
No 247
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=43.11 E-value=19 Score=33.46 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCCCceE-EEccCCCccccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~-v~~~~G~~~~~~d~VIla~ 64 (259)
.+.+.+..+++| ++..|..|.. +++++. |.+.+|..+ .+|.||+||
T Consensus 124 ~~~l~~~~GV~I-~~~~V~~L~~--d~g~V~GV~t~~G~~i-~Ad~VVLAT 170 (641)
T 3cp8_A 124 RRIVEHEPNIDL-LQDTVIGVSA--NSGKFSSVTVRSGRAI-QAKAAILAC 170 (641)
T ss_dssp HHHHHTCTTEEE-EECCEEEEEE--ETTEEEEEEETTSCEE-EEEEEEECC
T ss_pred HHHHHhCCCCEE-EeeEEEEEEe--cCCEEEEEEECCCcEE-EeCEEEECc
Confidence 333333247787 4568999887 556665 777788664 899999994
No 248
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=42.94 E-value=24 Score=29.71 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCCEEEeec---CC-----CCCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGD---FC-----VSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD---~~-----~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++|+++|- ++ .|+.+-+-+.||.+||+.|+++|.
T Consensus 282 ~~~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 282 GVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHHHhh
Confidence 5678999993 22 345789999999999999999874
No 249
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=42.31 E-value=23 Score=32.22 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=29.7
Q ss_pred CCCCeeEcceEEEEEEeecCCCc-eE-EEcc------CC---------CccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNL-WS-VSGL------DG---------QSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~-~~-v~~~------~G---------~~~~~~d~VIla~ 64 (259)
..+++|++++.|.+|.. ++++ +. |.+. +| .. ..+|.||+|+
T Consensus 156 ~~Gv~i~~g~~v~~l~~--~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~-i~Ad~VV~Ad 213 (584)
T 2gmh_A 156 ALGVEVYPGYAAAEILF--HEDGSVKGIATNDVGIQKDGAPKTTFERGLE-LHAKVTIFAE 213 (584)
T ss_dssp HTTCEEETTCCEEEEEE--CTTSSEEEEEECCEEECTTSCEEEEEECCCE-EECSEEEECC
T ss_pred HcCCEEEcCCEEEEEEE--cCCCCEEEEEeCCccccCCCCcccccCCceE-EECCEEEEee
Confidence 35899999999999997 5433 43 6544 34 34 3899999993
No 250
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=42.25 E-value=18 Score=29.23 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=25.3
Q ss_pred CchHHHHHHhcCCCCeeEcceEEEEEEee---cCCCceEEEccCCCc
Q 024990 10 GMNSICKALCHQPGVESKFGVGVGRFEWL---EDKNLWSVSGLDGQS 53 (259)
Q Consensus 10 Gm~~l~~~La~~l~~~i~~~~~V~~I~~~---~~~~~~~v~~~~G~~ 53 (259)
||++++.++.+-+|. +|.+|++. ..+.-|+|+++||+.
T Consensus 1 g~~~v~a~~~~l~G~------~v~~v~~~g~G~~~~vyrv~l~DG~~ 41 (288)
T 3f7w_A 1 GVNSVAARVTELTGR------EVAAVAERGHSHRWHLYRVELADGTP 41 (288)
T ss_dssp CCHHHHHHHHHHHCC------CEEEEEEEEEETTEEEEEEEETTSCE
T ss_pred ChHHHHHHHHHhcCC------CeEEEEecCCCCCeEEEEEEECCCCE
Confidence 899999999975554 44555541 122238898888853
No 251
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=42.10 E-value=29 Score=30.95 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=31.3
Q ss_pred HHHHhcCCCCeeEcceEEEEEEeecCC--CceEEE--ccCCCc--cccccEEEecC
Q 024990 15 CKALCHQPGVESKFGVGVGRFEWLEDK--NLWSVS--GLDGQS--LGQFNGVVASD 64 (259)
Q Consensus 15 ~~~La~~l~~~i~~~~~V~~I~~~~~~--~~~~v~--~~~G~~--~~~~d~VIla~ 64 (259)
.....+..+++|++++.|.+|+...++ +++.++ ..+|.. ...+|.||+|+
T Consensus 256 ~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~ 311 (519)
T 3qfa_A 256 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAI 311 (519)
T ss_dssp HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECS
T ss_pred HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEec
Confidence 333445568899999999888752111 344443 345532 13699999993
No 252
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=41.94 E-value=16 Score=32.84 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=32.1
Q ss_pred HHHHHhcCCCCeeEcceEEEEEEeecCCCce-EEEcc---CCCc----cccccEEEecC
Q 024990 14 ICKALCHQPGVESKFGVGVGRFEWLEDKNLW-SVSGL---DGQS----LGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~-~v~~~---~G~~----~~~~d~VIla~ 64 (259)
+.+.+.+..+++|++++.|.+|.. ++++. -|... +|+. +..++.||+|+
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~--~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaa 257 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVR--NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSA 257 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEE--ETTEEEEEEESCTTSSGGGEEEEEEEEEEEECS
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEE--eCCEEEEEEEEecCCCceeEEEEEeCCEEEEcC
Confidence 555555556789999999999997 44432 23333 3542 11579999993
No 253
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=41.83 E-value=24 Score=34.40 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++||.+||-.....+..|+..|..||..|...++
T Consensus 409 s~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~~~lg 444 (965)
T 2gag_A 409 AVANQHLAGAMTGRLDTASALSTGAATGAAAATAAG 444 (965)
T ss_dssp CCTTEEECGGGGTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEecCCchhHHHHHHHHHHHHHHHHHHcC
Confidence 457899999988777788999999999999988764
No 254
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=39.52 E-value=28 Score=29.52 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.7
Q ss_pred cCCCCEEEeecCCCCC----ChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVSP----NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~----~ie~A~~SG~~aA~~l~~~l 256 (259)
...++||.+||-..+. ....|...|..+|+.|+..|
T Consensus 284 t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l 323 (401)
T 3vrd_B 284 SLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALL 323 (401)
T ss_dssp SSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 4567999999987542 56789999999999998876
No 255
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=39.14 E-value=27 Score=29.88 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=32.6
Q ss_pred HHHHHhcCCC-CeeEcceEEEEEEeecCCCceEEEccC---CC-ccccccEEEecC
Q 024990 14 ICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVASD 64 (259)
Q Consensus 14 l~~~La~~l~-~~i~~~~~V~~I~~~~~~~~~~v~~~~---G~-~~~~~d~VIla~ 64 (259)
|.+++.+..+ ++|+++++|.+|+. +++|+|+..+ |+ ....+|.||.|+
T Consensus 113 L~~~~~~~~g~~~v~~~~~v~~i~~---~~~v~v~~~~~~~g~~~~~~ad~vV~Ad 165 (410)
T 3c96_A 113 LLAAVRERLGQQAVRTGLGVERIEE---RDGRVLIGARDGHGKPQALGADVLVGAD 165 (410)
T ss_dssp HHHHHHHHHCTTSEEESEEEEEEEE---ETTEEEEEEEETTSCEEEEEESEEEECC
T ss_pred HHHHHHhhCCCcEEEECCEEEEEec---CCccEEEEecCCCCCceEEecCEEEECC
Confidence 3344433234 47899999999986 3578887654 63 124899999993
No 256
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=39.01 E-value=1.1e+02 Score=28.37 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred CCCeeEcceEEEEEEeecCCCce-EEEccCCCccccccEEEecC
Q 024990 22 PGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 22 l~~~i~~~~~V~~I~~~~~~~~~-~v~~~~G~~~~~~d~VIla~ 64 (259)
.+++| +++.|..|.. +++++ .|.+.+|..+ .+|.||+||
T Consensus 138 ~GV~I-~~~~V~~L~~--e~g~V~GV~t~dG~~I-~Ad~VVLAT 177 (651)
T 3ces_A 138 PNLMI-FQQAVEDLIV--ENDRVVGAVTQMGLKF-RAKAVVLTV 177 (651)
T ss_dssp TTEEE-EECCEEEEEE--SSSBEEEEEETTSEEE-EEEEEEECC
T ss_pred CCCEE-EEEEEEEEEe--cCCEEEEEEECCCCEE-ECCEEEEcC
Confidence 57887 6789999987 55554 5777788654 899999994
No 257
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=38.92 E-value=21 Score=30.54 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=28.8
Q ss_pred cCCCCEEEeecCCC-----CCChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCV-----SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~-----g~~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-.. ......|+.+|+.||+.|...
T Consensus 255 t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 294 (385)
T 3klj_A 255 TSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGE 294 (385)
T ss_dssp CSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCC
Confidence 45789999999764 357899999999999998753
No 258
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=38.79 E-value=74 Score=22.07 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=34.0
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEEEcc-----CCCccccccEE-EecCCCCCCc
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL-----DGQSLGQFNGV-VASDKNVVSP 70 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v~~~-----~G~~~~~~d~V-Ila~~~~p~~ 70 (259)
.++.+.|++...-+..+.-.+..-+. .++-|+.... .++.....|.| ||| +.+.
T Consensus 41 ksi~~aL~~~vksk~sfKG~L~tYrf--cDnVWTf~lkd~~fk~~~~~~~~d~vKIVA---C~~~ 100 (108)
T 1nvp_D 41 KAINAALAQRVRNRVNFRGSLNTYRF--CDNVWTFVLNDVEFREVTELIKVDKVKIVA---CDGK 100 (108)
T ss_dssp HHHHHHHHHTCCCEEEEEEEEEEEEE--ETTEEEEEEEEEEEECSSCEEEEEEEEEEE---EC--
T ss_pred HHHHHHHHHHhccCCeEeeccCCccc--cCcEEEEEEeceEEEeccceeecCeEEEEE---eCCC
Confidence 36778888877665566666666677 5678975322 12222478999 999 7664
No 259
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=38.67 E-value=18 Score=32.67 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=27.3
Q ss_pred CCCCeeEcceEEEEEEeecCC-Cc---eEEEccC-CCc-ccccc-EEEec
Q 024990 21 QPGVESKFGVGVGRFEWLEDK-NL---WSVSGLD-GQS-LGQFN-GVVAS 63 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~-~~---~~v~~~~-G~~-~~~~d-~VIla 63 (259)
..+++|++++.|.+|.. ++ ++ +.+...+ |+. ...++ .||+|
T Consensus 221 ~~~~~i~~~~~V~~i~~--~~~~~~~GV~~~~~~~g~~~~i~A~k~VIla 268 (546)
T 2jbv_A 221 QENFTLLTGLRARQLVF--DADRRCTGVDIVDSAFGHTHRLTARNEVVLS 268 (546)
T ss_dssp CTTEEEECSCEEEEEEE--CTTSBEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred CCCcEEEeCCEEEEEEE--CCCCeEEEEEEEECCCCcEEEEEeCccEEEe
Confidence 45789999999999997 54 33 3333221 531 23687 89999
No 260
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=38.32 E-value=13 Score=34.39 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=33.2
Q ss_pred CCeeEcceEEEEEEeecCCC-----ceEEEc-cCCCc-cccccEEEecCCCCCCcchhhh
Q 024990 23 GVESKFGVGVGRFEWLEDKN-----LWSVSG-LDGQS-LGQFNGVVASDKNVVSPRFRDV 75 (259)
Q Consensus 23 ~~~i~~~~~V~~I~~~~~~~-----~~~v~~-~~G~~-~~~~d~VIla~~~~p~~~a~~l 75 (259)
+++|++++.|.+|.. +++ ++++.. .+|+. ...+|.||+++-..|.++.+.+
T Consensus 274 nv~v~~~~~V~~i~~--~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~ 331 (623)
T 3pl8_A 274 RFNLFPAVACERVVR--NALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN 331 (623)
T ss_dssp EEEEECSEEEEEEEE--CTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHT
T ss_pred CEEEEeCCEEEEEEE--ECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHh
Confidence 688999999999987 432 234443 34542 2379999999544455554444
No 261
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=37.58 E-value=25 Score=29.60 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCCEEEeecC------CCCCChhHHHHHHHHHHHHHHhh
Q 024990 223 KRRLAICGDF------CVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 223 ~~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.++|+++||. +.|.+++-|++.+..+|+.|...
T Consensus 310 ~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~ 348 (412)
T 4hb9_A 310 SSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASV 348 (412)
T ss_dssp CCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4689999994 45678999999999999888654
No 262
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=37.21 E-value=25 Score=29.92 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=29.0
Q ss_pred CCCCEEEeec--------CCCCCChhHHHHHHHHHHHHHHhhhc
Q 024990 222 VKRRLAICGD--------FCVSPNVEGAILSGLDAASKLTEILS 257 (259)
Q Consensus 222 ~~~~l~laGD--------~~~g~~ie~A~~SG~~aA~~l~~~l~ 257 (259)
..++|++||= .-.|+.+-+=+.||++||+.|+++|.
T Consensus 292 v~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~~~~~~~ 335 (344)
T 3jsk_A 292 IVPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIRVFD 335 (344)
T ss_dssp EETTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCEEEechhhHhhcCCCCCCcccceeeecCHHHHHHHHHHHH
Confidence 3579999992 12367899999999999999999874
No 263
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=36.60 E-value=32 Score=30.44 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
...++||.+||-..+. ....|+..|+.||+.|..
T Consensus 303 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 303 TSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp CSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 3457899999988765 456999999999999876
No 264
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=36.05 E-value=17 Score=34.18 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCEEEeecCCCCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++||.+||-.....+..|+..|..||+.|...+
T Consensus 666 ~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 666 IKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp CCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence 4689999998877789999999999999887654
No 265
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=35.81 E-value=34 Score=29.89 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
...++||.+||-.... ....|+..|+.+|+.|..
T Consensus 299 t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 299 TSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTG 333 (467)
T ss_dssp CSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 3467899999987654 588899999999998864
No 266
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=35.61 E-value=28 Score=30.79 Aligned_cols=35 Identities=14% Similarity=-0.032 Sum_probs=28.5
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
...++||.+||-..+. ...-|+..|+.||+.|...
T Consensus 307 t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 307 TLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp CSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 4567899999988764 4678999999999998753
No 267
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=35.55 E-value=47 Score=30.11 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHhcCCCCeeEcceEEEEEEee-----cC--CCceEEE--ccCCCcc-ccccEEEecC
Q 024990 17 ALCHQPGVESKFGVGVGRFEWL-----ED--KNLWSVS--GLDGQSL-GQFNGVVASD 64 (259)
Q Consensus 17 ~La~~l~~~i~~~~~V~~I~~~-----~~--~~~~~v~--~~~G~~~-~~~d~VIla~ 64 (259)
...+..+++|++++.|.+|+.. .+ .+++.++ ..+|+.+ ..+|.||+|+
T Consensus 334 ~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~ 391 (598)
T 2x8g_A 334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV 391 (598)
T ss_dssp HHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred HHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence 3344468899999988888641 11 1345443 3567543 1499999993
No 268
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=35.20 E-value=34 Score=33.60 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=30.1
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~l 256 (259)
+..++||.+||-..+. .+-.|+..|+.||+.|...|
T Consensus 471 Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~~L 507 (1025)
T 1gte_A 471 TSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYI 507 (1025)
T ss_dssp CSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999988754 68889999999999998755
No 269
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=34.91 E-value=22 Score=31.37 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-.... ....|+..|+.||+.|..
T Consensus 314 t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 314 TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAG 348 (482)
T ss_dssp CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcC
Confidence 3467899999988754 577899999999999875
No 270
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=34.83 E-value=27 Score=29.63 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
.++++++||.. .|.+++-|+++|..+|+.|...+
T Consensus 285 ~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~ 324 (399)
T 2x3n_A 285 ADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLAL 324 (399)
T ss_dssp ETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 36899999964 46789999999999999987653
No 271
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=34.69 E-value=19 Score=31.69 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=28.5
Q ss_pred CCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDFCVSP--NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l 256 (259)
.++||.+||-..+. .+..|+..|..+|+.|...+
T Consensus 359 ~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~~l 394 (460)
T 1cjc_A 359 VPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDL 394 (460)
T ss_dssp CTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 47999999977654 37789999999999998765
No 272
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=34.15 E-value=36 Score=30.01 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=28.9
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+. ....|+..|+.||+.|...
T Consensus 328 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 363 (491)
T 3urh_A 328 TSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQ 363 (491)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCC
Confidence 4567899999988544 6889999999999998754
No 273
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=33.88 E-value=31 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=26.2
Q ss_pred CEEEeecC------CCCCChhHHHHHHHHHHHHHHh
Q 024990 225 RLAICGDF------CVSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 225 ~l~laGD~------~~g~~ie~A~~SG~~aA~~l~~ 254 (259)
+|+++||. +.|.+++-|+++|..+|+.|..
T Consensus 315 rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~ 350 (398)
T 2xdo_A 315 PITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 350 (398)
T ss_dssp CEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHS
T ss_pred cEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHh
Confidence 89999985 4677999999999999998864
No 274
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=33.33 E-value=43 Score=29.29 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=28.9
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+. ....|+..|+.||+.|...
T Consensus 308 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (476)
T 3lad_A 308 TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGH 343 (476)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 4567899999988554 6788999999999998754
No 275
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=33.29 E-value=33 Score=32.19 Aligned_cols=41 Identities=22% Similarity=0.112 Sum_probs=27.8
Q ss_pred hcCCCCeeEcceEEEEEEeecCCCceEEEc--cCCCcc------------------ccccEEEec
Q 024990 19 CHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSL------------------GQFNGVVAS 63 (259)
Q Consensus 19 a~~l~~~i~~~~~V~~I~~~~~~~~~~v~~--~~G~~~------------------~~~d~VIla 63 (259)
.+..+++|++++.|.+|+. + +..++. .+|... ..+|.||+|
T Consensus 581 l~~~GV~i~~~~~v~~i~~--~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a 641 (729)
T 1o94_A 581 LHELHVEELGDHFCSRIEP--G--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLV 641 (729)
T ss_dssp HHHTTCEEECSEEEEEEET--T--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEE
T ss_pred HHhCCCEEEcCcEEEEEEC--C--eEEEEEecCCceEEecccccccccccCCcceeeeCCEEEEC
Confidence 3456899999999999974 2 444432 233211 379999999
No 276
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=33.23 E-value=44 Score=29.36 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=28.5
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+ .....|+..|+.||+.|...
T Consensus 316 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 316 TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 456789999998743 36888999999999998753
No 277
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=32.96 E-value=1.5e+02 Score=27.41 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=27.6
Q ss_pred cCCCCEEEeecCCCCCChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~ 254 (259)
...++||+||...+..+.+-|..+|+.|+-....
T Consensus 387 k~~~gLf~AGqinGt~GyeEAaaqGl~AG~nAa~ 420 (637)
T 2zxi_A 387 KKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAAL 420 (637)
T ss_dssp SSSBTEEECGGGGTBCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeecCCcchHHHHHHHHHHHHHHHHH
Confidence 3467999999999888889999999988765443
No 278
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=31.83 E-value=39 Score=29.50 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=28.2
Q ss_pred cCCCCEEEeecCCC-C-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCV-S-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~-g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-.. + .....|+..|+.||+.|..
T Consensus 304 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 304 TSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAG 339 (468)
T ss_dssp CSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcC
Confidence 34678999999887 4 4678899999999999875
No 279
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=31.79 E-value=47 Score=29.18 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+ .....|++.|+.||+.|..
T Consensus 312 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 312 TNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFG 346 (479)
T ss_dssp CSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcC
Confidence 356799999998754 3688999999999999874
No 280
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=31.29 E-value=45 Score=29.20 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=28.6
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+. ....|+..|+.||+.|...
T Consensus 321 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 321 TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 4467899999988543 6888999999999998754
No 281
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=31.27 E-value=27 Score=31.48 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=25.7
Q ss_pred CCeeEc--ceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 23 GVESKF--GVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~--~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++++.. +.+|.+|+. ++ |.+.||+.+ .+|.||+||
T Consensus 344 nV~lv~~~~~~I~~it~----~g--v~~~dG~~~-~~DvIV~AT 380 (540)
T 3gwf_A 344 NVEAVAIKENPIREVTA----KG--VVTEDGVLH-ELDVLVFAT 380 (540)
T ss_dssp TEEEEETTTSCEEEECS----SE--EEETTCCEE-ECSEEEECC
T ss_pred CEEEEeCCCCCccEEec----Ce--EEcCCCCEE-ECCEEEECC
Confidence 566664 678888875 34 556789765 899999993
No 282
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=31.14 E-value=36 Score=30.56 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=28.3
Q ss_pred cCCCCeeEcceEEEEEEeecCCC---c---eEEEccCCCcc-c---cccEEEecC
Q 024990 20 HQPGVESKFGVGVGRFEWLEDKN---L---WSVSGLDGQSL-G---QFNGVVASD 64 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~~---~---~~v~~~~G~~~-~---~~d~VIla~ 64 (259)
+..+++|++++.|.+|.. +++ + +.+...+|+.. . .++.||+|+
T Consensus 205 ~~~~~~v~~~~~v~~i~~--~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaa 257 (536)
T 1ju2_A 205 NSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSA 257 (536)
T ss_dssp CTTTEEEEESCEEEEEEE--CCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECC
T ss_pred cCCCcEEEeCCEEEEEEE--CCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcC
Confidence 455789999999999997 432 2 33333356531 1 358999993
No 283
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=30.86 E-value=47 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~ 255 (259)
...++||.+||-..+ .....|+..|+.||+.|...
T Consensus 316 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 316 TSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 456789999998743 36788999999999998753
No 284
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=30.63 E-value=39 Score=28.53 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.3
Q ss_pred CCEEEeecCCC------CCChhHHHHHHHHHHHHHHh
Q 024990 224 RRLAICGDFCV------SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 224 ~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~ 254 (259)
++|+++||... |.+++-|+++|..+|+.|..
T Consensus 262 grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~ 298 (381)
T 3c4a_A 262 GKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCT 298 (381)
T ss_dssp TTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhc
Confidence 68999999654 66899999999999998854
No 285
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=30.41 E-value=47 Score=28.92 Aligned_cols=35 Identities=11% Similarity=-0.089 Sum_probs=28.8
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+. ....|+..|+.+|+.|...
T Consensus 296 t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 296 TSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp CSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 4567999999987754 5678999999999998753
No 286
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=29.62 E-value=24 Score=30.99 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=28.1
Q ss_pred CCCCEEEeecCCCCC--ChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~~g~--~ie~A~~SG~~aA~~l~~~l 256 (259)
..++||.+||-..+. .+..|+..|..+|+.|+..+
T Consensus 350 ~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 350 GSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp TCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 357899999987554 36679999999999998765
No 287
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=29.57 E-value=38 Score=28.74 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=26.8
Q ss_pred CCCEEEeecCCC------CCChhHHHHHHHHHHHHHHh
Q 024990 223 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 223 ~~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~ 254 (259)
.++++++||... |.+++-|+++|..+|+.|..
T Consensus 300 ~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~ 337 (407)
T 3rp8_A 300 RGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQ 337 (407)
T ss_dssp ETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHS
T ss_pred cCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 358999999654 56899999999999998864
No 288
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=29.29 E-value=68 Score=25.75 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=25.9
Q ss_pred CCCCeeEcceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 21 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
..+.++..+ .|..+.. ..+...+.+.++..+ .||+||+||
T Consensus 78 ~~~~~~~~~-~v~~~~~--~~~~~~~~~~~~~~~-~~~~liiAT 117 (314)
T 4a5l_A 78 KYGTTIITE-TIDHVDF--STQPFKLFTEEGKEV-LTKSVIIAT 117 (314)
T ss_dssp HTTCEEECC-CEEEEEC--SSSSEEEEETTCCEE-EEEEEEECC
T ss_pred hcCcEEEEe-EEEEeec--CCCceEEEECCCeEE-EEeEEEEcc
Confidence 345665544 4555555 455566666677664 899999994
No 289
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=29.27 E-value=40 Score=28.57 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCEEEeecCCC------CCChhHHHHHHHHHHHHHHh
Q 024990 224 RRLAICGDFCV------SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 224 ~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~ 254 (259)
++|+++||... |.+++-|++++..+|+.|..
T Consensus 299 grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~ 335 (397)
T 2vou_A 299 GRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK 335 (397)
T ss_dssp TTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhc
Confidence 58999999654 66899999999999988753
No 290
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=29.03 E-value=51 Score=28.92 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+. ....|+..|+.+|+.|...
T Consensus 316 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 316 TNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 4567899999988744 5678999999999998753
No 291
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=28.93 E-value=70 Score=29.46 Aligned_cols=40 Identities=13% Similarity=-0.120 Sum_probs=28.1
Q ss_pred CC-eeEcceEEEEEEeecCCC---ce---EEE-ccCCCc-cccccEEEecC
Q 024990 23 GV-ESKFGVGVGRFEWLEDKN---LW---SVS-GLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 23 ~~-~i~~~~~V~~I~~~~~~~---~~---~v~-~~~G~~-~~~~d~VIla~ 64 (259)
++ +|++++.|.+|.. +++ ++ .+. ..+|+. ...++.||+||
T Consensus 166 gv~~i~~~~~v~~L~~--~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAt 214 (643)
T 1jnr_A 166 GEENIYERVFIFELLK--DNNDPNAVAGAVGFSVREPKFYVFKAKAVILAT 214 (643)
T ss_dssp CGGGEECSEEEEEEEE--CTTCTTBEEEEEEEESSSSCEEEEECSEEEECC
T ss_pred CCcEEEecCEEEEEEE--cCCccceeEEEEEEEecCCcEEEEEcCEEEECC
Confidence 78 8999999999987 444 43 222 245642 23799999994
No 292
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=28.71 E-value=53 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+ .....|+..|+.||+.|...
T Consensus 423 ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 423 TTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence 356789999998543 36889999999999998753
No 293
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=28.68 E-value=52 Score=28.58 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=28.2
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+ .....|++.|+.+|+.|..
T Consensus 293 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 293 TNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFN 327 (450)
T ss_dssp CSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 356789999998764 3678899999999999875
No 294
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=28.23 E-value=55 Score=29.14 Aligned_cols=34 Identities=21% Similarity=0.068 Sum_probs=27.9
Q ss_pred cCCCCEEEeecCCCC--CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g--~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+ .....|+..|+.||+.|..
T Consensus 344 Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g 379 (519)
T 3qfa_A 344 TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 379 (519)
T ss_dssp CSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 446789999998733 4678999999999999874
No 295
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=28.12 E-value=35 Score=30.76 Aligned_cols=34 Identities=6% Similarity=0.019 Sum_probs=24.9
Q ss_pred CCeeEc--ceEEEEEEeecCCCceEEEccCCCccccccEEEecC
Q 024990 23 GVESKF--GVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 23 ~~~i~~--~~~V~~I~~~~~~~~~~v~~~~G~~~~~~d~VIla~ 64 (259)
++++.. +++|..|+. ++ |.+.|| .+ .+|.||+||
T Consensus 352 nV~lv~~~~~~I~~it~----~g--v~~~dG-~~-~~D~IV~AT 387 (545)
T 3uox_A 352 NVHLVDIREAPIQEVTP----EG--IKTADA-AY-DLDVIIYAT 387 (545)
T ss_dssp TEEEEETTTSCEEEEET----TE--EEESSC-EE-ECSEEEECC
T ss_pred CEEEEecCCCCceEEcc----Ce--EEeCCC-ee-ecCEEEECC
Confidence 566664 788988875 34 555688 64 899999993
No 296
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=27.18 E-value=56 Score=28.52 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=28.6
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHhh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~~ 255 (259)
+..++||.+||-..+. ....|+..|+.||+.|...
T Consensus 310 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 310 TKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 4567899999987654 5688999999999998753
No 297
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=26.97 E-value=1.2e+02 Score=21.56 Aligned_cols=33 Identities=6% Similarity=0.280 Sum_probs=22.7
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEeecCCCceEE
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSV 46 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~~~~~~~~~v 46 (259)
.++.+.|++.+.-+..+.-.+..-+. .++-|++
T Consensus 45 ksi~~aL~~~vksk~sfKG~L~tYrf--cDnVWtf 77 (121)
T 1nh2_D 45 KVVAETLKDNTQSKLTVKGNLDTYGF--CDDVWTF 77 (121)
T ss_dssp HHHHHHHHHSCCCEEEEEEEEEEEEE--ETTEEEE
T ss_pred HHHHHHHHHHhccCCeEEeeeccccc--cCcEEEE
Confidence 35678888877665566666666666 5678874
No 298
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=26.83 E-value=61 Score=28.54 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=28.5
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+ .....|+..|+.||+.|..
T Consensus 316 t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 316 TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFA 350 (490)
T ss_dssp CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcC
Confidence 356789999998864 3688999999999999875
No 299
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=26.55 E-value=60 Score=28.35 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=27.9
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||...+. ....|+..|+.+|+.|..
T Consensus 292 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 292 TNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFD 326 (463)
T ss_dssp CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 3467899999987643 678899999999998874
No 300
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=26.42 E-value=39 Score=29.89 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=30.2
Q ss_pred HhcCCCCeeEcceEEEEEEeecCCCc---eEEEccCCCccccccEEEecC
Q 024990 18 LCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQSLGQFNGVVASD 64 (259)
Q Consensus 18 La~~l~~~i~~~~~V~~I~~~~~~~~---~~v~~~~G~~~~~~d~VIla~ 64 (259)
+...-+.+|.+++.|.+|.. ++++ +.+...++.....++.|||+.
T Consensus 220 ~~~r~nl~v~~~~~v~~i~~--~~~~a~gv~~~~~~~~~~~~a~~VILsA 267 (526)
T 3t37_A 220 VRGRKNLTILTGSRVRRLKL--EGNQVRSLEVVGRQGSAEVFADQIVLCA 267 (526)
T ss_dssp HHTCTTEEEECSCEEEEEEE--ETTEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCCeEEEeCCEEEEEEe--cCCeEEEEEEEecCceEEEeecceEEcc
Confidence 34445678999999999997 4443 334444444334789999993
No 301
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=26.23 E-value=45 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=27.5
Q ss_pred CCCEEEeecCC------CCCChhHHHHHHHHHHHHHHhh
Q 024990 223 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 223 ~~~l~laGD~~------~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.++++++||.. .|.+++-|++++..+|+.|...
T Consensus 278 ~grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~ 316 (394)
T 1k0i_A 278 HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKA 316 (394)
T ss_dssp ETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 36899999964 4678999999999999988654
No 302
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=26.17 E-value=64 Score=28.48 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=28.3
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ....|+..|+.||+.|..
T Consensus 320 t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 320 TNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFG 354 (495)
T ss_dssp CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcC
Confidence 3567899999988643 678899999999999875
No 303
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=25.96 E-value=69 Score=27.74 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=27.5
Q ss_pred CCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
..++||.+||-..+. ....|...|+.+|+.|..
T Consensus 293 ~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 293 RVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVR 326 (455)
T ss_dssp SSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcC
Confidence 467899999988765 466799999999999875
No 304
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=25.11 E-value=64 Score=28.13 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=27.9
Q ss_pred cCCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+. ....|+..|+.||+.|..
T Consensus 299 t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 299 TSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAG 333 (464)
T ss_dssp CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcC
Confidence 3457899999988654 577899999999999875
No 305
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=24.95 E-value=33 Score=31.03 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=26.6
Q ss_pred CCCCEEEeecC---------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDF---------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~---------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+- +.|.++-.|+.+|+.|++.+.+..
T Consensus 525 ~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~~ 568 (571)
T 1y0p_A 525 VIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568 (571)
T ss_dssp EEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 35689999863 334468889999999999887653
No 306
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=24.95 E-value=36 Score=30.73 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=26.7
Q ss_pred CCCCEEEeecCCC---------CCChhHHHHHHHHHHHHHHhhh
Q 024990 222 VKRRLAICGDFCV---------SPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 222 ~~~~l~laGD~~~---------g~~ie~A~~SG~~aA~~l~~~l 256 (259)
+-++||.||+-.. |.++-.|+.+|+.|++.+.+..
T Consensus 520 ~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~~ 563 (566)
T 1qo8_A 520 PIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHA 563 (566)
T ss_dssp EEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 4568999996432 3368889999999999887654
No 307
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=24.57 E-value=34 Score=31.04 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.4
Q ss_pred CCCEEEeecC---------CCCCChhHHHHHHHHHHHHHHhhh
Q 024990 223 KRRLAICGDF---------CVSPNVEGAILSGLDAASKLTEIL 256 (259)
Q Consensus 223 ~~~l~laGD~---------~~g~~ie~A~~SG~~aA~~l~~~l 256 (259)
-++||.||+- +.|.++-.|+.+|+.|++.+.+..
T Consensus 527 I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~~ 569 (572)
T 1d4d_A 527 ITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFA 569 (572)
T ss_dssp EEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 4589999964 334478899999999999887654
No 308
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=24.44 E-value=60 Score=28.88 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=28.4
Q ss_pred cCCCCEEEeecCCCC-CChhHHHHHHHHHHHHHHh
Q 024990 221 DVKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 221 ~~~~~l~laGD~~~g-~~ie~A~~SG~~aA~~l~~ 254 (259)
+..++||.+||-..+ .....|+..|+.||+.|..
T Consensus 343 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 343 TSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMG 377 (523)
T ss_dssp CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 356789999998875 4678899999999999875
No 309
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=24.25 E-value=37 Score=30.95 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=32.2
Q ss_pred cCCCCeeEcceEEEEEEeecCC--C---ceEEEccCCCc-cccc-cEEEecCCCCCCcchh
Q 024990 20 HQPGVESKFGVGVGRFEWLEDK--N---LWSVSGLDGQS-LGQF-NGVVASDKNVVSPRFR 73 (259)
Q Consensus 20 ~~l~~~i~~~~~V~~I~~~~~~--~---~~~v~~~~G~~-~~~~-d~VIla~~~~p~~~a~ 73 (259)
+..+++|++++.|++|....++ + ++.+...+|+. ...+ +.||||+-..-.|+++
T Consensus 242 ~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL 302 (587)
T 1gpe_A 242 QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL 302 (587)
T ss_dssp TCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred cCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence 3457899999999999872111 1 12333245642 2357 8899995444444443
No 310
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=23.81 E-value=69 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCCCEEEeecCCCCC-ChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~~g~-~ie~A~~SG~~aA~~l~~ 254 (259)
..++||.+||-..+. ....|+..|+.+|+.|..
T Consensus 296 ~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 296 SMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAG 329 (458)
T ss_dssp SSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcC
Confidence 457899999987654 577899999999999874
No 311
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=23.59 E-value=49 Score=28.07 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=19.1
Q ss_pred hHHHHHHhcCCCCeeEcceEEEEEEe
Q 024990 12 NSICKALCHQPGVESKFGVGVGRFEW 37 (259)
Q Consensus 12 ~~l~~~La~~l~~~i~~~~~V~~I~~ 37 (259)
..|.+++.+..+++|++++.|..+..
T Consensus 164 ~~L~~~a~~~~gV~i~~~~~V~dLi~ 189 (344)
T 3jsk_A 164 STVLSKVLQRPNVKLFNATTVEDLIT 189 (344)
T ss_dssp HHHHHHHHTCTTEEEEETEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEeCCEEEEEEe
Confidence 44555555445789999999999986
No 312
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=23.07 E-value=34 Score=28.79 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=25.4
Q ss_pred CCEEEeecC------CCCCChhHHHHHHHHHHHHHH
Q 024990 224 RRLAICGDF------CVSPNVEGAILSGLDAASKLT 253 (259)
Q Consensus 224 ~~l~laGD~------~~g~~ie~A~~SG~~aA~~l~ 253 (259)
++++++||. +.|.+++-|+++|..+|+.|.
T Consensus 281 ~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~ 316 (379)
T 3alj_A 281 GKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLE 316 (379)
T ss_dssp TTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhc
Confidence 589999985 346789999999999998875
No 313
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=22.95 E-value=58 Score=30.26 Aligned_cols=50 Identities=12% Similarity=-0.093 Sum_probs=31.7
Q ss_pred HHHHHHhcCC-CCeeEcceEEEEEEeecCCC---ce---EEE-ccCCCc-cccccEEEecC
Q 024990 13 SICKALCHQP-GVESKFGVGVGRFEWLEDKN---LW---SVS-GLDGQS-LGQFNGVVASD 64 (259)
Q Consensus 13 ~l~~~La~~l-~~~i~~~~~V~~I~~~~~~~---~~---~v~-~~~G~~-~~~~d~VIla~ 64 (259)
.|.+++.+.. +++|+.++.|..|.. +++ ++ .+. ..+|+. ...+++||+||
T Consensus 171 ~L~~~a~~~~~gV~i~~~~~v~dLi~--~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLAT 229 (662)
T 3gyx_A 171 IVAEAAKNALGQDRIIERIFIVKLLL--DKNTPNRIAGAVGFNLRANEVHIFKANAMVVAC 229 (662)
T ss_dssp HHHHHHHHHHCTTTEECSEEECCCEE--CSSSTTBEEEEEEEESSSSCEEEEECSEEEECC
T ss_pred HHHHHHHhcCCCcEEEEceEEEEEEE--eCCccceEEEEEEEEcCCCcEEEEEeCEEEECC
Confidence 4444444422 788999999999887 444 33 222 235542 23799999994
No 314
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=22.85 E-value=57 Score=28.69 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=27.9
Q ss_pred CCCCEEEeecCCCCCChhHHHHHHHHHHHHHHhh
Q 024990 222 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 222 ~~~~l~laGD~~~g~~ie~A~~SG~~aA~~l~~~ 255 (259)
..++||+||+..+-.+.+-|..+|..|+......
T Consensus 327 ~~~~Lf~AGqi~G~~Gy~eAaa~Gl~AG~naa~~ 360 (443)
T 3g5s_A 327 EAEGLYAAGVLAGVEGYLESAATGFLAGLNAARK 360 (443)
T ss_dssp TEEEEEECGGGGTBCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEECccccccHHHHHHHHhHHHHHHHHHHH
Confidence 4568999999998888999999999988655443
No 315
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=22.78 E-value=72 Score=29.12 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=33.3
Q ss_pred CCCCeeEcceEEEEEEeecC--CC---ceEEEccCCCc-ccccc-EEEecCCCCCCcchhhh
Q 024990 21 QPGVESKFGVGVGRFEWLED--KN---LWSVSGLDGQS-LGQFN-GVVASDKNVVSPRFRDV 75 (259)
Q Consensus 21 ~l~~~i~~~~~V~~I~~~~~--~~---~~~v~~~~G~~-~~~~d-~VIla~~~~p~~~a~~l 75 (259)
..+.+|.+++.|++|..... ++ |+.+...+|+. ...++ .|||++-..-.||++.+
T Consensus 239 r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~l 300 (583)
T 3qvp_A 239 RPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEY 300 (583)
T ss_dssp CTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHH
T ss_pred CCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHH
Confidence 44689999999999987211 22 23444345652 23565 59999544555555444
No 316
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=22.73 E-value=32 Score=30.62 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=25.1
Q ss_pred CCCCEEEeecCC---------CCCChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFC---------VSPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~---------~g~~ie~A~~SG~~aA~~l~~ 254 (259)
+-++||.||+-. .|.++-.|+.+|+.|++.+.+
T Consensus 467 ~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~ 508 (510)
T 4at0_A 467 PIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK 508 (510)
T ss_dssp EEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence 346899999633 334688999999999998754
No 317
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=21.68 E-value=89 Score=27.27 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=32.3
Q ss_pred HhcCCCCe--eEcceEEEEEEeecCCCceEEEccC---CC-ccccccEEEecC
Q 024990 18 LCHQPGVE--SKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVASD 64 (259)
Q Consensus 18 La~~l~~~--i~~~~~V~~I~~~~~~~~~~v~~~~---G~-~~~~~d~VIla~ 64 (259)
.++..+++ |++++.|.+|++..++++|.|+..+ |+ ....||+||+|+
T Consensus 110 ~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 110 RVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp HHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred HHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 34444565 8999999999983222379887754 31 123899999994
No 318
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=21.22 E-value=45 Score=29.96 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=25.8
Q ss_pred CCCEEEeecCCC------CCChhHHHHHHHHHHHHHHhh
Q 024990 223 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTEI 255 (259)
Q Consensus 223 ~~~l~laGD~~~------g~~ie~A~~SG~~aA~~l~~~ 255 (259)
.++|+++||... |.+++-+++.+..+|..|...
T Consensus 308 ~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~ 346 (549)
T 2r0c_A 308 AGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAAT 346 (549)
T ss_dssp ETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEccccccCCCccCCccccccHHHHHHHHHHHHH
Confidence 468999999653 557888899888888877654
No 319
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=20.00 E-value=74 Score=28.26 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=26.7
Q ss_pred CCCCEEEeecCCC---CCChhHHHHHHHHHHHHHHh
Q 024990 222 VKRRLAICGDFCV---SPNVEGAILSGLDAASKLTE 254 (259)
Q Consensus 222 ~~~~l~laGD~~~---g~~ie~A~~SG~~aA~~l~~ 254 (259)
..++||.+||-.. ...-.-|.+.|.-+|+.|..
T Consensus 363 ~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 363 GSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp TCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHH
Confidence 4679999999543 24788999999999998865
Done!