BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024993
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 33/219 (15%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
+L++ L E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 219
IVA +QG LG +FHPELT D R F++M+
Sbjct: 153 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEMV 187
>pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|E Chain E, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|F Chain F, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 208
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 32/219 (14%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVL +QG EH+ AL +LGV+ + ++ P+QL V LI+PGGESTTM R+ + ++
Sbjct: 21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
L E + G PV+ TCAG+I LA + K QE +G LD TV RN +G Q++SFE
Sbjct: 81 DEKLVERINNGLPVFATCAGVILLAKRI---KNYSQEKLGVLDITVERNAYGRQVESFET 137
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
+ +PA+ G + FR +FIRAP +++ G +V++LA Y
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILATYDYDP---------------- 176
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 219
V V++GN+L FHPELT D R H YFL+M+
Sbjct: 177 --------VLVKEGNILACTFHPELTDDLRLHRYFLEMV 207
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 33/217 (15%)
Query: 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
+GVL LQG+ EH+ A++ G + V ++K +QL+ + L++PGGESTT RL + + L
Sbjct: 26 IGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTXRRLIDRYGLXE 85
Query: 63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
L++F GKP +GTCAGLI LA + VG + +G D TV RN FG Q +SFEAEL
Sbjct: 86 PLKQFAAAGKPXFGTCAGLILLAKRIVGYD---EPHLGLXDITVERNSFGRQRESFEAEL 142
Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
S+ + + F GVFIRAP +++ G VDVLA Y
Sbjct: 143 SIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY---------------------- 174
Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 219
IVA RQG LG +FHPELT D R YFL +
Sbjct: 175 --NDRIVAARQGQFLGCSFHPELTDDHRLXQYFLNXV 209
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 33/219 (15%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
+L++ L E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 219
IVA +QG LG +F+PELT D R F++M+
Sbjct: 153 ----NGRIVAAKQGQFLGCSFNPELTEDHRVTQLFVEMV 187
>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
pdb|1R9G|B Chain B, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
Length = 216
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 121/219 (55%), Gaps = 33/219 (15%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTT RL + +
Sbjct: 22 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTXRRLIDTYQF 81
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP +GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 82 XEPLREFAAQGKPXFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 138
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
+L++ L E F GVFIRAP +L+ G +V+VL+++
Sbjct: 139 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 172
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 219
IVA +QG LG +FHPELT D R F++ +
Sbjct: 173 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEXV 207
>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase
Length = 191
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 126/221 (57%), Gaps = 40/221 (18%)
Query: 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
VVGVLALQG F EH ALKRLG++ E+RK + L+ + +LI+PGGESTT+ +LA + +
Sbjct: 4 VVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIE 63
Query: 62 PALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
+R+ V+ G ++GTCAG I+LA + VG Q +G L+ V RN FG Q++SFE
Sbjct: 64 DEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFEE 121
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA---DYPVPSNKVLYSSSTVEIQ 177
+L V L S F GVFIRAP +G V+VLA D PV
Sbjct: 122 DLEVEGLGS-------FHGVFIRAPVFRRLGEGVEVLARLGDLPV--------------- 159
Query: 178 EENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKM 218
VRQG +L ++FHPELT D R H YFL++
Sbjct: 160 ------------LVRQGKVLASSFHPELTEDPRLHRYFLEL 188
>pdb|2ABW|A Chain A, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
pdb|2ABW|B Chain B, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
Length = 227
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 31/228 (13%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
+ +GVL+LQG F HI +L + +++R L L+IPGGESTT+ R Y
Sbjct: 4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63
Query: 58 HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
N L+ AL F+ + KP+WGTCAG I L+ KL G + GGLD T+ RNF
Sbjct: 64 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPSNKVLY 169
+GSQ SF L++ ++ + IRAP + ++ D V VLA +
Sbjct: 124 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATF--------- 172
Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 217
E+ P +I AV Q N LGT FHPEL T + YF +
Sbjct: 173 -------SHESYGP--NIIAAVEQNNCLGTVFHPELLPHTAFQQYFYE 211
>pdb|4ADS|G Chain G, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|H Chain H, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|I Chain I, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|J Chain J, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|K Chain K, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|L Chain L, Crystal Structure Of Plasmodial Plp Synthase Complex
Length = 217
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 113/228 (49%), Gaps = 31/228 (13%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
+ +GVL+LQG F HI +L + +++R L L+IPGGESTT+ R Y
Sbjct: 2 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 61
Query: 58 HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
N L+ AL F+ + KP+WGTCAG I L+ KL G + GGLD T+ RNF
Sbjct: 62 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 121
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPSNKVLY 169
+GSQ SF L++ ++ + IRAP + ++ D V VLA +
Sbjct: 122 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATF--------- 170
Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 217
E+ P +I AV Q N LGT F+PEL T + YF +
Sbjct: 171 -------SHESYGP--NIIAAVEQNNCLGTVFNPELLPHTAFQQYFYE 209
>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Methanocaldococcus Jannaschii
Length = 186
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 38/218 (17%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M++GVLA+QG EH A+K+ G + ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
++ P+ GTCAG++ L+ K G Q L+ +D TV RN +G Q+ SFE
Sbjct: 61 LEKIKN---SNLPILGTCAGMVLLS-KGTGI---NQILLELMDITVKRNAYGRQVDSFEK 113
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
E+ L GVFIRAP V +K+L S VE+ +
Sbjct: 114 EIEFKDLGK-------VYGVFIRAPVV-----------------DKIL--SDDVEVIARD 147
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWHSYFLK 217
IV V+QG + +FHPEL+ D + + YF++
Sbjct: 148 GDK----IVGVKQGKYMALSFHPELSEDGYKVYKYFVE 181
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 39 SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG--LIFLANKAVGQKL 93
+L++PGG S R F R+FV GKPV+ C G L+ A+ G+KL
Sbjct: 88 DALLLPGGHSPDYLRGDNRFVTF--TRDFVNSGKPVFAICHGPQLLISADVIRGRKL 142
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPGGESTTMARLAEY- 57
VV V+ ++ G+ A++ LG + ++ P + S LI+PG + +
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPG-----VGNYGHFV 60
Query: 58 HNLF-----PALREFVKMGKPVWGTCAGL 81
NLF +RE+++ GKP+ G C GL
Sbjct: 61 DNLFNRGFEKPIREYIESGKPIMGICVGL 89
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 43/170 (25%)
Query: 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGG 95
Q ++II GG ++ A A + + PA+ +GKPV G C G+ + NK G
Sbjct: 66 QGFRAIIISGGPNSVYAEDAPWFD--PAI---FTIGKPVLGICYGMQMM-NKVFGG---- 115
Query: 96 QELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155
TVH+ S + +SV S FRG+ +L G VD
Sbjct: 116 ---------TVHKK---SVREDGVFNISVDNTCS------LFRGLQKEEVVLLTHGDSVD 157
Query: 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPEL 205
+AD KV+ S + +A L G FHPE+
Sbjct: 158 KVAD----GFKVVARSGNIVAG-----------IANESKKLYGAQFHPEV 192
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 41/189 (21%)
Query: 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL 93
L L+IPGG + LA ++ ++EF + GKP+ G + LA
Sbjct: 86 DLSKYDGLVIPGGRAPEY--LALTASVVELVKEFSRSGKPIASIXHGQLILA-------- 135
Query: 94 GGQELVGGLDCTVHRNFFGSQIQS------------FEAELSVPALASQEGGPETFRGVF 141
+ V G CT + S + + + S+ A+ EG PE F +F
Sbjct: 136 -AADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPE-FIQLF 193
Query: 142 IRAPAVLDVGPDVDVL-------ADYPVPSNKVLYSS-STVEIQEENAMPEKKVIVAVRQ 193
++A G + +L DY V KV + S + Q + PEKK
Sbjct: 194 VKALGGKITGANKRILFLCGDYXEDYEV---KVPFQSLQALGCQVDAVCPEKKA------ 244
Query: 194 GNLLGTAFH 202
G+ TA H
Sbjct: 245 GDRCPTAIH 253
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90
Q ++II GG ++ A A + + PA+ +GKPV G C G+ + NK G
Sbjct: 71 QGFRAIIISGGPNSVYAEDAPWFD--PAI---FTIGKPVLGICYGMQMM-NKVFG 119
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 35 LQNVSSLIIPGG----ESTTMARLAE-YHNLFPALREFVKMGK-PVWGTCAGLIFLANKA 88
++++ ++ PGG + A++A+ ++NL +++ F PVWGTC G L+
Sbjct: 84 FKSINGILFPGGSVDLRRSDYAKVAKIFYNL--SIQSFDDGDYFPVWGTCLGFEELSLLI 141
Query: 89 VGQKLGGQELVGGLDCTVHRNFFGSQIQS 117
G+ L +D + NF G Q+ S
Sbjct: 142 SGECL--LTATDTVDVAMPLNFTGGQLHS 168
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPGGESTTMARLAEY- 57
VV V+ ++ G+ A++ LG + ++ P + S LI+PG + +
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPG-----VGNYGHFV 60
Query: 58 HNLF-----PALREFVKMGKPVWGTCAGL 81
NLF +RE+++ GKP+ G GL
Sbjct: 61 DNLFNRGFEKPIREYIESGKPIMGIXVGL 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,983,700
Number of Sequences: 62578
Number of extensions: 266436
Number of successful extensions: 631
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 18
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)