Query 024993
Match_columns 259
No_of_seqs 170 out of 1722
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02832 glutamine amidotransf 100.0 3.1E-42 6.7E-47 300.8 24.5 247 1-259 2-248 (248)
2 COG0118 HisH Glutamine amidotr 100.0 3E-42 6.4E-47 288.2 19.4 195 1-219 2-203 (204)
3 CHL00188 hisH imidazole glycer 100.0 1.3E-34 2.8E-39 248.8 20.4 201 1-218 2-209 (210)
4 PRK13142 hisH imidazole glycer 100.0 2.4E-34 5.3E-39 243.0 19.6 181 2-217 1-186 (192)
5 PRK14004 hisH imidazole glycer 100.0 2.2E-32 4.7E-37 235.0 20.6 198 2-218 1-209 (210)
6 PRK13525 glutamine amidotransf 100.0 1.5E-31 3.4E-36 226.4 21.5 186 1-221 2-189 (189)
7 PRK13146 hisH imidazole glycer 100.0 1.2E-31 2.7E-36 230.4 20.4 195 1-218 2-207 (209)
8 PRK13170 hisH imidazole glycer 100.0 2.1E-31 4.5E-36 226.8 19.4 188 1-217 1-195 (196)
9 PRK13181 hisH imidazole glycer 100.0 9.2E-31 2E-35 223.2 21.0 191 2-217 1-198 (199)
10 PRK13152 hisH imidazole glycer 100.0 3.6E-30 7.8E-35 220.0 18.8 192 2-217 1-200 (201)
11 PRK13143 hisH imidazole glycer 100.0 1.7E-29 3.7E-34 215.7 19.7 193 1-220 1-199 (200)
12 COG0311 PDX2 Predicted glutami 100.0 1.8E-28 4E-33 201.7 18.7 191 1-221 1-192 (194)
13 PRK13141 hisH imidazole glycer 100.0 2.5E-28 5.4E-33 209.1 20.3 196 2-220 1-203 (205)
14 cd01748 GATase1_IGP_Synthase T 100.0 1E-28 2.2E-33 210.3 17.3 191 3-216 1-198 (198)
15 TIGR03800 PLP_synth_Pdx2 pyrid 100.0 2.4E-28 5.2E-33 206.0 19.3 183 2-216 1-183 (184)
16 PLN02617 imidazole glycerol ph 100.0 3.3E-28 7.2E-33 233.7 21.6 199 2-221 8-212 (538)
17 PRK13526 glutamine amidotransf 100.0 3.5E-28 7.6E-33 202.6 18.7 176 1-217 3-178 (179)
18 PRK13527 glutamine amidotransf 100.0 1.1E-27 2.3E-32 204.6 21.0 188 1-220 1-198 (200)
19 TIGR01855 IMP_synth_hisH imida 100.0 5.4E-28 1.2E-32 205.8 18.8 188 3-217 1-195 (196)
20 cd01749 GATase1_PB Glutamine A 100.0 2E-27 4.3E-32 200.3 18.3 180 3-216 1-183 (183)
21 PF01174 SNO: SNO glutamine am 100.0 4.5E-27 9.7E-32 195.4 16.7 183 5-220 1-187 (188)
22 PRK06895 putative anthranilate 99.9 8.8E-27 1.9E-31 197.4 16.4 173 1-217 2-187 (190)
23 COG0512 PabA Anthranilate/para 99.9 2.9E-26 6.3E-31 191.0 18.1 171 1-218 2-190 (191)
24 KOG0623 Glutamine amidotransfe 99.9 6.1E-26 1.3E-30 201.8 15.4 194 3-217 4-206 (541)
25 PRK00758 GMP synthase subunit 99.9 5E-26 1.1E-30 191.6 13.7 171 3-222 2-184 (184)
26 PRK06774 para-aminobenzoate sy 99.9 4.5E-25 9.9E-30 187.0 17.2 174 2-217 1-190 (191)
27 TIGR00888 guaA_Nterm GMP synth 99.9 2.4E-25 5.2E-30 188.1 14.2 170 3-218 1-183 (188)
28 cd01742 GATase1_GMP_Synthase T 99.9 3.7E-25 8E-30 185.5 14.3 168 3-216 1-181 (181)
29 PRK07649 para-aminobenzoate/an 99.9 2.2E-24 4.7E-29 183.5 17.3 171 3-220 2-189 (195)
30 PRK08007 para-aminobenzoate sy 99.9 2E-24 4.4E-29 182.6 16.5 168 3-217 2-186 (187)
31 CHL00101 trpG anthranilate syn 99.9 2.4E-24 5.1E-29 182.6 16.8 170 3-218 2-188 (190)
32 PRK05670 anthranilate synthase 99.9 3.4E-24 7.4E-29 181.3 16.9 172 3-220 2-189 (189)
33 COG0518 GuaA GMP synthase - Gl 99.9 7.8E-25 1.7E-29 186.3 11.5 177 1-217 2-191 (198)
34 PRK06490 glutamine amidotransf 99.9 2.8E-24 6.1E-29 188.2 15.3 172 1-217 8-191 (239)
35 PRK07765 para-aminobenzoate sy 99.9 1E-23 2.3E-28 181.8 18.0 178 1-223 1-196 (214)
36 cd01743 GATase1_Anthranilate_S 99.9 7.1E-24 1.5E-28 178.5 16.0 168 3-216 1-184 (184)
37 PLN02347 GMP synthetase 99.9 4.2E-24 9E-29 205.7 16.2 173 2-217 12-200 (536)
38 TIGR00566 trpG_papA glutamine 99.9 8.5E-24 1.8E-28 178.9 16.2 170 3-217 2-187 (188)
39 PRK05637 anthranilate synthase 99.9 1.7E-23 3.7E-28 179.7 17.6 178 2-219 3-205 (208)
40 PLN02335 anthranilate synthase 99.9 2.8E-23 6E-28 180.1 17.9 185 1-226 19-220 (222)
41 PRK08857 para-aminobenzoate sy 99.9 4.4E-23 9.6E-28 175.2 17.8 176 2-218 1-192 (193)
42 PRK09065 glutamine amidotransf 99.9 1.1E-23 2.5E-28 184.2 12.4 178 1-217 1-198 (237)
43 PF00117 GATase: Glutamine ami 99.9 1.7E-23 3.8E-28 176.7 12.2 174 4-218 1-191 (192)
44 PRK00074 guaA GMP synthase; Re 99.9 5.3E-23 1.1E-27 197.9 14.5 170 2-217 5-187 (511)
45 PRK05665 amidotransferase; Pro 99.9 2.5E-22 5.3E-27 176.0 16.5 165 1-208 3-191 (240)
46 TIGR01815 TrpE-clade3 anthrani 99.9 2E-22 4.3E-27 199.5 17.8 174 1-220 517-709 (717)
47 PRK08250 glutamine amidotransf 99.9 2.5E-22 5.5E-27 175.5 16.3 176 1-218 1-193 (235)
48 PRK09522 bifunctional glutamin 99.9 7.1E-22 1.5E-26 190.3 17.7 178 1-225 2-196 (531)
49 PRK07053 glutamine amidotransf 99.9 4E-22 8.7E-27 174.1 13.6 172 1-217 3-190 (234)
50 PRK13566 anthranilate synthase 99.9 1.2E-21 2.6E-26 194.2 18.1 174 1-220 527-719 (720)
51 cd01741 GATase1_1 Subgroup of 99.9 1.3E-21 2.8E-26 165.0 12.2 171 2-216 1-188 (188)
52 PLN02889 oxo-acid-lyase/anthra 99.9 6E-21 1.3E-25 191.5 19.1 187 1-225 82-341 (918)
53 cd01744 GATase1_CPSase Small c 99.9 8E-21 1.7E-25 159.3 16.3 162 3-216 1-178 (178)
54 COG0505 CarA Carbamoylphosphat 99.9 9.4E-21 2E-25 170.4 17.5 172 2-224 181-367 (368)
55 PRK07567 glutamine amidotransf 99.9 3.1E-21 6.6E-26 169.4 14.2 170 1-208 1-195 (242)
56 TIGR01368 CPSaseIIsmall carbam 99.9 2E-20 4.3E-25 172.1 18.3 167 2-220 175-357 (358)
57 PRK12564 carbamoyl phosphate s 99.9 2.2E-20 4.9E-25 172.0 18.6 168 1-219 178-360 (360)
58 PRK12838 carbamoyl phosphate s 99.9 4.5E-20 9.7E-25 169.5 19.4 169 1-221 168-352 (354)
59 CHL00197 carA carbamoyl-phosph 99.9 5.9E-20 1.3E-24 169.9 19.8 171 1-224 193-379 (382)
60 TIGR01823 PabB-fungal aminodeo 99.8 4.2E-20 9.1E-25 184.2 18.6 181 1-225 6-210 (742)
61 PRK14607 bifunctional glutamin 99.8 5.7E-20 1.2E-24 177.8 17.0 172 3-220 2-190 (534)
62 TIGR01737 FGAM_synth_I phospho 99.8 2.8E-20 6E-25 161.9 12.1 87 1-87 1-94 (227)
63 KOG3210 Imidazoleglycerol-phos 99.8 4.7E-19 1E-23 143.8 12.4 194 3-218 14-218 (226)
64 PLN02771 carbamoyl-phosphate s 99.8 6.8E-19 1.5E-23 163.6 15.2 156 2-209 242-408 (415)
65 cd03130 GATase1_CobB Type 1 gl 99.8 1.4E-18 3E-23 148.2 15.3 181 11-216 12-198 (198)
66 PRK03619 phosphoribosylformylg 99.8 2.5E-18 5.3E-23 148.9 15.2 187 1-217 1-218 (219)
67 cd01745 GATase1_2 Subgroup of 99.8 5.1E-19 1.1E-23 149.8 10.3 139 14-216 23-189 (189)
68 PRK11366 puuD gamma-glutamyl-g 99.8 1.1E-18 2.5E-23 154.2 12.2 185 14-227 30-252 (254)
69 PRK06186 hypothetical protein; 99.8 1.3E-18 2.7E-23 150.5 9.5 190 2-220 3-227 (229)
70 cd01747 GATase1_Glutamyl_Hydro 99.7 1.7E-17 3.8E-22 148.0 12.1 160 14-207 24-216 (273)
71 COG2071 Predicted glutamine am 99.7 9.2E-18 2E-22 144.4 9.8 180 15-222 31-241 (243)
72 PRK05380 pyrG CTP synthetase; 99.7 2.1E-17 4.7E-22 157.3 11.8 200 2-225 290-532 (533)
73 COG0047 PurL Phosphoribosylfor 99.7 9E-17 1.9E-21 137.0 11.8 98 1-110 3-108 (231)
74 cd01750 GATase1_CobQ Type 1 gl 99.7 3.2E-16 6.9E-21 133.2 13.8 106 3-109 1-114 (194)
75 KOG0026 Anthranilate synthase, 99.7 4.7E-16 1E-20 126.2 13.7 175 3-220 21-215 (223)
76 PRK01175 phosphoribosylformylg 99.7 1.9E-16 4E-21 140.3 11.2 85 1-87 4-105 (261)
77 KOG1622 GMP synthase [Nucleoti 99.7 4.2E-17 9E-22 149.9 6.2 169 2-216 18-201 (552)
78 PRK01077 cobyrinic acid a,c-di 99.7 5.3E-15 1.1E-19 140.8 20.4 195 2-222 247-451 (451)
79 COG1797 CobB Cobyrinic acid a, 99.7 7.4E-16 1.6E-20 142.6 14.0 194 2-220 247-451 (451)
80 TIGR00337 PyrG CTP synthase. C 99.7 5.5E-16 1.2E-20 147.7 13.3 192 2-217 291-524 (525)
81 TIGR00379 cobB cobyrinic acid 99.7 8.8E-15 1.9E-19 139.2 21.2 195 2-221 246-449 (449)
82 COG0504 PyrG CTP synthase (UTP 99.6 3.7E-15 8.1E-20 138.9 14.1 206 2-225 290-532 (533)
83 PF07722 Peptidase_C26: Peptid 99.6 1.6E-15 3.4E-20 131.2 10.5 77 14-90 28-125 (217)
84 PLN02327 CTP synthase 99.6 6.1E-15 1.3E-19 140.9 14.1 203 2-222 299-549 (557)
85 KOG3179 Predicted glutamine sy 99.6 5.1E-15 1.1E-19 123.8 10.1 160 9-208 23-197 (245)
86 PRK13896 cobyrinic acid a,c-di 99.6 2.8E-14 6E-19 134.5 16.4 189 2-218 235-432 (433)
87 PRK00784 cobyric acid synthase 99.6 3.4E-14 7.4E-19 136.4 17.2 184 2-221 253-448 (488)
88 cd01746 GATase1_CTP_Synthase T 99.6 1.7E-14 3.6E-19 126.2 13.3 84 2-90 2-103 (235)
89 KOG0370 Multifunctional pyrimi 99.6 1.2E-13 2.5E-18 136.1 19.5 174 2-227 174-360 (1435)
90 PRK05368 homoserine O-succinyl 99.5 5.2E-13 1.1E-17 120.2 17.0 142 36-220 98-252 (302)
91 PRK06278 cobyrinic acid a,c-di 99.5 1.4E-13 3.1E-18 131.1 13.9 97 1-106 1-104 (476)
92 cd01740 GATase1_FGAR_AT Type 1 99.5 1E-13 2.2E-18 121.5 11.0 84 3-87 1-98 (238)
93 KOG1224 Para-aminobenzoate (PA 99.5 2.9E-13 6.3E-18 126.9 14.4 179 2-223 16-221 (767)
94 PF13507 GATase_5: CobB/CobQ-l 99.5 1.3E-13 2.8E-18 122.0 11.5 87 1-87 2-106 (259)
95 COG3442 Predicted glutamine am 99.5 1.4E-12 3.1E-17 110.4 13.4 185 11-220 22-216 (250)
96 PF07685 GATase_3: CobB/CobQ-l 99.4 1.9E-12 4.1E-17 106.6 12.1 77 33-109 3-85 (158)
97 TIGR00313 cobQ cobyric acid sy 99.4 1.2E-11 2.7E-16 118.4 16.4 105 2-109 249-362 (475)
98 TIGR01857 FGAM-synthase phosph 99.3 2E-11 4.3E-16 126.6 14.9 87 1-87 978-1090(1239)
99 KOG2387 CTP synthase (UTP-ammo 99.3 1.5E-11 3.2E-16 113.4 11.0 96 2-108 300-423 (585)
100 COG1492 CobQ Cobyric acid synt 99.2 1.4E-09 2.9E-14 102.8 16.9 105 2-108 253-367 (486)
101 PLN03206 phosphoribosylformylg 99.1 4.8E-10 1E-14 117.3 13.4 87 1-87 1038-1142(1307)
102 TIGR01735 FGAM_synt phosphorib 99.1 9.6E-10 2.1E-14 115.5 13.4 88 1-88 1056-1161(1310)
103 PRK05297 phosphoribosylformylg 99.1 4.2E-10 9.1E-15 118.4 9.0 87 1-87 1036-1140(1290)
104 PHA03366 FGAM-synthase; Provis 99.0 8.9E-09 1.9E-13 108.5 14.9 87 1-87 1029-1133(1304)
105 cd03146 GAT1_Peptidase_E Type 98.9 4.3E-09 9.4E-14 90.6 9.1 106 2-108 33-157 (212)
106 TIGR01739 tegu_FGAM_synt herpe 98.7 7.4E-08 1.6E-12 101.1 12.1 86 2-87 931-1034(1202)
107 KOG1559 Gamma-glutamyl hydrola 98.7 3.1E-08 6.8E-13 85.5 6.7 74 14-89 81-165 (340)
108 PF09825 BPL_N: Biotin-protein 98.7 7.4E-07 1.6E-11 82.5 16.3 193 1-207 1-218 (367)
109 PRK11780 isoprenoid biosynthes 98.7 1.5E-07 3.2E-12 81.5 9.7 87 2-88 3-145 (217)
110 PRK05282 (alpha)-aspartyl dipe 98.6 5.5E-07 1.2E-11 78.7 11.3 105 2-107 33-155 (233)
111 TIGR01382 PfpI intracellular p 98.5 1E-06 2.2E-11 72.4 9.0 84 2-87 1-108 (166)
112 cd03132 GATase1_catalase Type 98.5 1.6E-06 3.5E-11 69.5 10.0 86 1-87 2-111 (142)
113 cd03144 GATase1_ScBLP_like Typ 98.4 1.5E-06 3.3E-11 67.6 8.1 80 2-84 1-90 (114)
114 cd01653 GATase1 Type 1 glutami 98.4 2.3E-06 4.9E-11 63.0 8.4 80 4-84 2-92 (115)
115 COG0693 ThiJ Putative intracel 98.4 2.4E-06 5.1E-11 71.8 9.2 86 1-88 3-116 (188)
116 cd03134 GATase1_PfpI_like A ty 98.3 2.7E-06 5.8E-11 69.8 8.5 84 2-87 1-110 (165)
117 cd03169 GATase1_PfpI_1 Type 1 98.3 3.5E-06 7.6E-11 70.4 9.2 84 2-87 1-124 (180)
118 PRK04155 chaperone protein Hch 98.3 8.1E-06 1.8E-10 73.5 10.6 51 36-87 146-196 (287)
119 cd03147 GATase1_Ydr533c_like T 98.2 4.8E-06 1E-10 72.8 7.9 51 36-87 93-143 (231)
120 cd03128 GAT_1 Type 1 glutamine 98.2 6.1E-06 1.3E-10 58.0 6.4 71 13-84 15-92 (92)
121 PRK11574 oxidative-stress-resi 98.2 1.9E-05 4E-10 66.8 10.4 85 1-86 3-114 (196)
122 cd03133 GATase1_ES1 Type 1 glu 98.1 1E-05 2.3E-10 69.8 8.4 75 14-88 21-142 (213)
123 cd03135 GATase1_DJ-1 Type 1 gl 98.1 2.1E-05 4.5E-10 64.1 9.2 84 3-87 1-109 (163)
124 PF04204 HTS: Homoserine O-suc 98.1 5.9E-05 1.3E-09 67.9 12.5 180 1-222 35-253 (298)
125 TIGR01383 not_thiJ DJ-1 family 98.1 2.6E-05 5.7E-10 64.6 9.1 85 2-87 1-112 (179)
126 cd03129 GAT1_Peptidase_E_like 98.1 4.5E-05 9.8E-10 65.4 10.8 105 2-107 31-157 (210)
127 cd03148 GATase1_EcHsp31_like T 98.0 2E-05 4.4E-10 68.8 7.5 51 36-87 95-145 (232)
128 PRK11249 katE hydroperoxidase 97.9 7E-05 1.5E-09 75.1 10.1 86 1-87 598-707 (752)
129 cd03138 GATase1_AraC_2 AraC tr 97.9 8.3E-05 1.8E-09 62.6 9.1 53 35-87 67-120 (195)
130 cd03137 GATase1_AraC_1 AraC tr 97.9 4.6E-05 9.9E-10 63.7 7.5 83 3-87 1-112 (187)
131 cd03140 GATase1_PfpI_3 Type 1 97.8 4.7E-05 1E-09 63.0 6.6 82 3-87 1-107 (170)
132 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.8 2E-05 4.4E-10 63.7 3.6 52 36-88 36-88 (147)
133 cd03139 GATase1_PfpI_2 Type 1 97.7 0.0001 2.2E-09 61.3 6.6 83 3-87 1-110 (183)
134 cd03141 GATase1_Hsp31_like Typ 97.6 0.00013 2.8E-09 63.3 6.5 51 37-88 90-140 (221)
135 cd03136 GATase1_AraC_ArgR_like 97.6 0.00023 4.9E-09 59.5 7.3 50 35-87 62-111 (185)
136 TIGR01001 metA homoserine O-su 97.5 0.0015 3.3E-08 58.7 11.3 144 36-220 98-251 (300)
137 PF03575 Peptidase_S51: Peptid 97.5 0.00033 7.2E-09 57.1 6.6 93 14-107 4-111 (154)
138 COG4285 Uncharacterized conser 97.5 0.0033 7.1E-08 53.9 12.6 105 1-107 1-123 (253)
139 cd03131 GATase1_HTS Type 1 glu 97.4 0.00019 4.2E-09 60.0 4.0 52 36-90 61-117 (175)
140 KOG1907 Phosphoribosylformylgl 97.3 0.0024 5.1E-08 64.5 11.1 86 2-87 1060-1163(1320)
141 KOG2764 Putative transcription 97.3 0.0012 2.7E-08 56.9 7.9 69 16-85 25-114 (247)
142 PF13278 DUF4066: Putative ami 97.1 0.00065 1.4E-08 55.7 4.8 52 34-87 58-109 (166)
143 PRK09393 ftrA transcriptional 97.1 0.0024 5.2E-08 58.1 8.6 50 35-87 73-122 (322)
144 cd03145 GAT1_cyanophycinase Ty 96.8 0.0073 1.6E-07 52.2 8.8 86 2-88 31-134 (217)
145 TIGR02069 cyanophycinase cyano 96.8 0.01 2.2E-07 52.5 9.4 105 2-107 30-162 (250)
146 COG3340 PepE Peptidase E [Amin 96.0 0.024 5.2E-07 48.7 6.8 74 15-89 54-136 (224)
147 PF03698 UPF0180: Uncharacteri 95.8 0.02 4.4E-07 41.6 4.9 42 2-46 3-44 (80)
148 COG3155 ElbB Uncharacterized p 95.3 0.13 2.7E-06 42.5 8.1 55 36-90 84-147 (217)
149 PRK01911 ppnK inorganic polyph 94.7 0.2 4.2E-06 45.4 8.7 71 1-81 1-98 (292)
150 COG1897 MetA Homoserine trans- 94.5 0.23 5E-06 43.9 8.3 61 143-208 176-241 (307)
151 PRK03708 ppnK inorganic polyph 94.5 0.23 5E-06 44.6 8.6 70 1-81 1-90 (277)
152 PRK03094 hypothetical protein; 94.3 0.14 3.1E-06 37.2 5.5 41 3-46 4-44 (80)
153 COG4977 Transcriptional regula 94.1 0.11 2.3E-06 47.8 5.6 49 36-87 75-124 (328)
154 PRK02649 ppnK inorganic polyph 92.6 0.61 1.3E-05 42.5 8.2 71 1-81 1-102 (305)
155 PRK14077 pnk inorganic polypho 91.1 1.3 2.8E-05 40.0 8.5 71 1-81 11-98 (287)
156 PRK04539 ppnK inorganic polyph 90.9 1.8 4E-05 39.2 9.3 70 2-81 7-102 (296)
157 PRK03378 ppnK inorganic polyph 90.7 1.7 3.7E-05 39.3 8.8 70 2-81 7-97 (292)
158 PRK04885 ppnK inorganic polyph 90.6 1.3 2.8E-05 39.5 7.9 63 1-81 1-71 (265)
159 PF06283 ThuA: Trehalose utili 90.6 0.86 1.9E-05 38.9 6.6 61 16-81 25-91 (217)
160 PRK02155 ppnK NAD(+)/NADH kina 90.4 1.7 3.7E-05 39.3 8.5 70 2-81 7-97 (291)
161 PRK03372 ppnK inorganic polyph 90.2 1.8 4E-05 39.4 8.7 70 2-81 7-106 (306)
162 PRK14076 pnk inorganic polypho 89.3 2 4.3E-05 42.5 8.8 71 1-81 291-382 (569)
163 PRK02645 ppnK inorganic polyph 88.4 3.3 7.2E-05 37.6 8.9 70 2-81 5-92 (305)
164 PRK14075 pnk inorganic polypho 88.1 3.1 6.8E-05 36.8 8.4 68 1-81 1-72 (256)
165 cd03143 A4_beta-galactosidase_ 88.0 1.9 4.1E-05 34.6 6.5 56 14-76 30-85 (154)
166 PF08532 Glyco_hydro_42M: Beta 87.6 1.1 2.4E-05 38.1 5.1 58 14-78 34-91 (207)
167 COG4635 HemG Flavodoxin [Energ 87.1 2.9 6.3E-05 34.5 6.9 78 1-82 1-90 (175)
168 PRK01185 ppnK inorganic polyph 86.3 5.4 0.00012 35.7 8.9 66 1-81 1-83 (271)
169 PRK11104 hemG protoporphyrinog 85.9 3.8 8.3E-05 34.0 7.4 73 1-80 1-87 (177)
170 PRK00561 ppnK inorganic polyph 85.2 3.8 8.3E-05 36.5 7.3 61 1-81 1-67 (259)
171 PRK01231 ppnK inorganic polyph 85.1 5 0.00011 36.4 8.2 70 2-81 6-96 (295)
172 COG0771 MurD UDP-N-acetylmuram 84.6 4.7 0.0001 38.7 8.1 30 1-30 8-37 (448)
173 COG4242 CphB Cyanophycinase an 82.8 0.98 2.1E-05 39.8 2.5 93 15-108 72-187 (293)
174 PF09198 T4-Gluco-transf: Bact 82.8 2.2 4.9E-05 25.6 3.2 26 1-26 1-37 (38)
175 PLN02929 NADH kinase 80.2 6.6 0.00014 35.7 7.0 57 14-81 38-97 (301)
176 PRK09271 flavodoxin; Provision 79.2 19 0.00042 29.1 9.0 45 1-45 1-59 (160)
177 COG2910 Putative NADH-flavin r 77.9 12 0.00026 31.9 7.3 79 1-82 1-107 (211)
178 TIGR00200 cinA_nterm competenc 75.7 7.7 0.00017 36.9 6.3 47 1-47 1-69 (413)
179 PRK00421 murC UDP-N-acetylmura 75.2 15 0.00033 35.0 8.3 79 1-80 8-115 (461)
180 PRK13015 3-dehydroquinate dehy 74.9 15 0.00032 29.9 6.8 48 1-48 2-79 (146)
181 COG1058 CinA Predicted nucleot 72.4 16 0.00034 32.5 7.0 47 1-47 2-70 (255)
182 PRK02231 ppnK inorganic polyph 72.0 14 0.00029 33.2 6.7 58 13-80 3-75 (272)
183 PF01220 DHquinase_II: Dehydro 70.8 6.6 0.00014 31.6 3.9 49 1-49 1-79 (140)
184 PRK03673 hypothetical protein; 70.2 11 0.00023 35.8 5.8 47 1-47 2-70 (396)
185 cd05014 SIS_Kpsf KpsF-like pro 70.1 26 0.00057 26.6 7.2 70 2-80 2-83 (128)
186 PF09822 ABC_transp_aux: ABC-t 69.7 24 0.00053 31.0 7.8 58 12-76 171-230 (271)
187 PRK03670 competence damage-ind 69.6 13 0.00029 32.8 6.0 47 1-47 1-70 (252)
188 PRK03501 ppnK inorganic polyph 68.0 27 0.00059 31.1 7.7 64 2-80 4-74 (264)
189 PRK06703 flavodoxin; Provision 67.5 22 0.00047 28.3 6.5 43 1-43 2-54 (151)
190 PF01513 NAD_kinase: ATP-NAD k 67.4 8.9 0.00019 34.3 4.5 70 2-81 1-110 (285)
191 PRK06756 flavodoxin; Provision 66.5 22 0.00049 28.1 6.3 45 1-45 2-57 (148)
192 PLN02935 Bifunctional NADH kin 66.3 33 0.00073 33.5 8.4 70 2-81 196-296 (508)
193 PRK00549 competence damage-ind 66.3 14 0.0003 35.1 5.8 47 1-47 1-69 (414)
194 cd00885 cinA Competence-damage 64.3 25 0.00053 29.1 6.3 68 14-88 23-102 (170)
195 PRK14571 D-alanyl-alanine synt 64.0 17 0.00037 32.5 5.7 42 1-43 1-59 (299)
196 KOG1467 Translation initiation 64.0 13 0.00028 36.0 5.0 79 1-83 386-473 (556)
197 PF00056 Ldh_1_N: lactate/mala 63.8 24 0.00051 28.1 5.9 47 1-47 1-79 (141)
198 PRK05395 3-dehydroquinate dehy 63.4 39 0.00085 27.4 7.0 48 1-48 2-79 (146)
199 TIGR00177 molyb_syn molybdenum 62.8 22 0.00047 28.4 5.5 35 14-48 31-77 (144)
200 PRK03815 murD UDP-N-acetylmura 62.5 42 0.00091 31.6 8.3 29 1-30 1-29 (401)
201 PF02601 Exonuc_VII_L: Exonucl 62.4 43 0.00093 30.3 8.1 77 1-82 15-117 (319)
202 COG4090 Uncharacterized protei 62.0 11 0.00023 30.2 3.4 43 33-79 81-124 (154)
203 PRK06444 prephenate dehydrogen 61.1 21 0.00046 30.3 5.5 39 1-46 1-40 (197)
204 TIGR02667 moaB_proteo molybden 60.1 34 0.00073 28.0 6.3 48 1-48 5-74 (163)
205 PRK01215 competence damage-ind 60.1 33 0.00072 30.5 6.7 48 1-48 4-73 (264)
206 TIGR00147 lipid kinase, YegS/R 59.4 66 0.0014 28.5 8.7 78 2-89 3-102 (293)
207 PRK10446 ribosomal protein S6 57.6 21 0.00046 31.9 5.2 31 1-31 1-34 (300)
208 PLN02727 NAD kinase 57.0 38 0.00081 35.6 7.2 71 2-82 680-778 (986)
209 PRK06242 flavodoxin; Provision 56.4 50 0.0011 25.9 6.7 45 1-45 1-51 (150)
210 TIGR01754 flav_RNR ribonucleot 56.0 67 0.0015 25.1 7.3 45 1-45 1-58 (140)
211 COG0745 OmpR Response regulato 55.5 61 0.0013 28.1 7.5 74 1-81 1-82 (229)
212 PRK09417 mogA molybdenum cofac 55.4 42 0.0009 28.5 6.3 68 1-73 4-97 (193)
213 cd00886 MogA_MoaB MogA_MoaB fa 55.1 34 0.00073 27.5 5.5 35 14-48 24-72 (152)
214 PRK03767 NAD(P)H:quinone oxido 54.5 19 0.00041 30.3 4.1 30 1-30 2-38 (200)
215 PRK04761 ppnK inorganic polyph 54.2 18 0.00039 32.0 4.0 38 34-81 22-59 (246)
216 TIGR01755 flav_wrbA NAD(P)H:qu 54.2 36 0.00078 28.6 5.7 30 1-30 1-37 (197)
217 COG1184 GCD2 Translation initi 53.3 28 0.0006 31.7 5.1 80 2-82 147-232 (301)
218 COG0061 nadF NAD kinase [Coenz 53.3 67 0.0015 28.7 7.6 71 1-81 1-89 (281)
219 PRK04690 murD UDP-N-acetylmura 52.9 67 0.0015 30.8 8.0 29 2-30 10-38 (468)
220 PRK01390 murD UDP-N-acetylmura 52.6 60 0.0013 30.8 7.7 29 2-30 11-39 (460)
221 PF13689 DUF4154: Domain of un 52.4 92 0.002 24.7 7.6 70 1-82 28-102 (145)
222 TIGR01082 murC UDP-N-acetylmur 52.3 41 0.00089 31.9 6.4 78 2-80 1-107 (448)
223 PRK04308 murD UDP-N-acetylmura 51.2 63 0.0014 30.5 7.5 29 2-30 7-35 (445)
224 PRK03369 murD UDP-N-acetylmura 51.2 50 0.0011 31.9 6.9 29 2-30 14-42 (488)
225 PRK01710 murD UDP-N-acetylmura 50.1 52 0.0011 31.4 6.8 29 2-30 16-44 (458)
226 COG5426 Uncharacterized membra 50.1 31 0.00068 29.5 4.5 65 14-78 36-117 (254)
227 PF00885 DMRL_synthase: 6,7-di 48.9 62 0.0013 26.1 6.0 73 1-74 4-102 (144)
228 cd03142 GATase1_ThuA Type 1 gl 48.8 57 0.0012 28.1 6.2 61 15-81 28-98 (215)
229 PRK11914 diacylglycerol kinase 48.4 1.1E+02 0.0024 27.3 8.3 50 1-50 9-77 (306)
230 PRK13054 lipid kinase; Reviewe 47.8 1.2E+02 0.0027 27.0 8.5 50 1-50 4-69 (300)
231 cd00758 MoCF_BD MoCF_BD: molyb 47.7 46 0.001 26.0 5.1 35 14-48 23-69 (133)
232 TIGR01088 aroQ 3-dehydroquinat 47.1 93 0.002 25.1 6.6 38 11-48 25-77 (141)
233 PRK00141 murD UDP-N-acetylmura 46.7 64 0.0014 31.0 6.8 29 2-30 17-45 (473)
234 TIGR00237 xseA exodeoxyribonuc 44.8 1.4E+02 0.003 28.5 8.7 72 1-76 130-224 (432)
235 COG1570 XseA Exonuclease VII, 44.3 1.1E+02 0.0025 29.3 7.9 71 2-76 137-230 (440)
236 PRK06455 riboflavin synthase; 43.8 1.5E+02 0.0032 24.4 7.4 45 1-45 2-64 (155)
237 PRK09189 uroporphyrinogen-III 43.8 66 0.0014 27.6 5.9 81 1-88 1-92 (240)
238 PRK13055 putative lipid kinase 43.6 1.4E+02 0.0031 27.1 8.4 50 1-50 3-72 (334)
239 TIGR02990 ectoine_eutA ectoine 43.6 1.8E+02 0.0038 25.5 8.6 66 2-76 122-211 (239)
240 TIGR02336 1,3-beta-galactosyl- 43.3 77 0.0017 32.2 6.7 54 24-79 482-544 (719)
241 PRK10569 NAD(P)H-dependent FMN 43.0 1.3E+02 0.0028 25.2 7.4 29 1-29 1-37 (191)
242 PLN02404 6,7-dimethyl-8-ribity 42.7 1.6E+02 0.0034 23.8 7.4 73 1-74 8-106 (141)
243 PRK06975 bifunctional uroporph 42.7 1.1E+02 0.0024 31.0 8.0 78 1-88 4-98 (656)
244 PRK01368 murD UDP-N-acetylmura 42.4 90 0.0019 29.9 7.1 28 2-30 8-35 (454)
245 TIGR00114 lumazine-synth 6,7-d 42.2 1.8E+02 0.0039 23.3 7.7 74 1-75 1-100 (138)
246 KOG4180 Predicted kinase [Gene 42.1 43 0.00094 30.9 4.5 54 15-78 80-136 (395)
247 COG1031 Uncharacterized Fe-S o 41.8 46 0.001 32.2 4.8 46 1-46 1-71 (560)
248 PF09897 DUF2124: Uncharacteri 41.8 5.2 0.00011 32.4 -1.2 40 37-79 80-119 (147)
249 PRK00286 xseA exodeoxyribonucl 40.8 1.6E+02 0.0035 27.9 8.5 71 2-76 137-229 (438)
250 PRK09273 hypothetical protein; 39.9 41 0.00088 29.0 3.8 30 1-30 1-37 (211)
251 TIGR03521 GldG gliding-associa 39.9 1.2E+02 0.0026 29.9 7.7 68 2-76 185-267 (552)
252 PRK08622 galactose-6-phosphate 39.7 87 0.0019 26.1 5.6 31 1-31 1-34 (171)
253 TIGR01118 lacA galactose-6-pho 39.6 74 0.0016 25.7 5.1 31 1-31 1-34 (141)
254 PRK05928 hemD uroporphyrinogen 39.2 55 0.0012 27.7 4.7 47 1-47 2-62 (249)
255 cd06300 PBP1_ABC_sugar_binding 39.2 2.1E+02 0.0046 24.2 8.5 67 2-77 1-91 (272)
256 TIGR03127 RuMP_HxlB 6-phospho 38.3 2.1E+02 0.0046 23.1 8.0 69 2-79 32-107 (179)
257 COG1597 LCB5 Sphingosine kinas 38.2 2E+02 0.0043 26.0 8.3 49 1-49 3-70 (301)
258 PRK05569 flavodoxin; Provision 37.9 70 0.0015 24.8 4.7 44 2-45 3-56 (141)
259 KOG1314 DHHC-type Zn-finger pr 37.6 20 0.00044 33.3 1.7 32 196-228 75-106 (414)
260 COG0303 MoeA Molybdopterin bio 37.6 80 0.0017 30.0 5.8 34 15-48 208-253 (404)
261 cd06309 PBP1_YtfQ_like Peripla 37.1 1.6E+02 0.0036 24.9 7.4 33 14-46 20-64 (273)
262 PTZ00393 protein tyrosine phos 36.7 2.6E+02 0.0055 24.7 8.3 75 1-79 92-178 (241)
263 PRK08621 galactose-6-phosphate 36.3 83 0.0018 25.4 4.9 31 1-31 1-34 (142)
264 PF04016 DUF364: Domain of unk 36.2 20 0.00043 28.9 1.3 43 1-46 12-71 (147)
265 TIGR01087 murD UDP-N-acetylmur 36.1 1.4E+02 0.0031 27.9 7.3 28 2-29 1-28 (433)
266 PF01975 SurE: Survival protei 35.6 39 0.00085 28.6 3.1 31 1-31 1-35 (196)
267 PF10727 Rossmann-like: Rossma 35.5 62 0.0014 25.4 4.0 29 1-30 11-40 (127)
268 PRK00683 murD UDP-N-acetylmura 35.5 1.7E+02 0.0036 27.5 7.7 29 2-30 5-33 (418)
269 PRK14573 bifunctional D-alanyl 35.4 1.4E+02 0.0031 30.7 7.7 28 3-30 7-35 (809)
270 PRK12615 galactose-6-phosphate 35.4 1.1E+02 0.0023 25.6 5.5 31 1-31 1-34 (171)
271 PF09075 STb_secrete: Heat-sta 35.1 11 0.00024 23.6 -0.3 14 74-87 32-45 (48)
272 PRK13337 putative lipid kinase 35.1 2.6E+02 0.0056 24.9 8.5 50 1-50 2-70 (304)
273 TIGR02853 spore_dpaA dipicolin 34.9 1.1E+02 0.0023 27.5 6.0 43 1-45 2-62 (287)
274 PRK12419 riboflavin synthase s 34.8 2.5E+02 0.0055 23.0 7.6 74 1-75 11-110 (158)
275 cd07388 MPP_Tt1561 Thermus the 34.7 2E+02 0.0044 24.8 7.4 35 1-46 5-40 (224)
276 PRK10017 colanic acid biosynth 33.9 1.7E+02 0.0036 28.0 7.4 30 1-30 1-40 (426)
277 cd06305 PBP1_methylthioribose_ 33.8 2.4E+02 0.0052 23.8 7.9 54 15-77 21-86 (273)
278 PF07090 DUF1355: Protein of u 33.4 79 0.0017 26.4 4.5 68 12-82 29-111 (177)
279 PRK00061 ribH 6,7-dimethyl-8-r 33.1 2.7E+02 0.0058 22.7 7.5 74 1-75 13-112 (154)
280 TIGR01119 lacB galactose-6-pho 32.8 1.3E+02 0.0029 25.0 5.7 31 1-31 1-34 (171)
281 PRK05568 flavodoxin; Provision 32.6 1.1E+02 0.0024 23.7 5.1 46 1-46 1-57 (142)
282 cd05005 SIS_PHI Hexulose-6-pho 32.5 2.7E+02 0.0059 22.5 8.5 69 2-79 35-110 (179)
283 PRK12359 flavodoxin FldB; Prov 32.5 1.3E+02 0.0028 25.0 5.6 45 1-45 1-53 (172)
284 PF04007 DUF354: Protein of un 31.5 3E+02 0.0064 25.4 8.4 81 1-85 1-96 (335)
285 PRK13059 putative lipid kinase 31.2 3.6E+02 0.0078 23.9 8.8 50 1-50 2-69 (295)
286 PRK07116 flavodoxin; Provision 31.1 1.8E+02 0.0038 23.3 6.2 26 1-26 3-31 (160)
287 PF12850 Metallophos_2: Calcin 31.1 67 0.0014 24.9 3.6 33 1-46 1-34 (156)
288 cd06318 PBP1_ABC_sugar_binding 31.0 2E+02 0.0043 24.5 6.9 32 15-46 21-64 (282)
289 PRK03957 V-type ATP synthase s 30.9 75 0.0016 23.8 3.7 21 1-25 1-21 (100)
290 PF12641 Flavodoxin_3: Flavodo 30.5 1.1E+02 0.0025 24.9 5.0 67 8-80 7-78 (160)
291 cd06316 PBP1_ABC_sugar_binding 30.0 3.2E+02 0.007 23.5 8.2 67 2-77 1-87 (294)
292 TIGR00768 rimK_fam alpha-L-glu 29.5 95 0.0021 26.7 4.7 44 2-45 1-56 (277)
293 PRK14690 molybdopterin biosynt 29.5 1.4E+02 0.0031 28.4 6.1 34 15-48 225-270 (419)
294 PF09508 Lact_bio_phlase: Lact 29.3 86 0.0019 31.7 4.6 62 15-78 470-540 (716)
295 PRK14619 NAD(P)H-dependent gly 29.0 81 0.0018 28.3 4.2 44 1-45 5-55 (308)
296 PLN02522 ATP citrate (pro-S)-l 28.7 1.6E+02 0.0034 29.7 6.4 73 2-83 169-262 (608)
297 KOG2452 Formyltetrahydrofolate 28.5 1.8E+02 0.004 28.3 6.5 78 1-79 1-87 (881)
298 PF14086 DUF4266: Domain of un 28.3 66 0.0014 21.2 2.5 34 202-236 11-45 (50)
299 PRK09267 flavodoxin FldA; Vali 28.3 1.9E+02 0.0041 23.2 5.9 45 1-45 2-54 (169)
300 cd05008 SIS_GlmS_GlmD_1 SIS (S 28.0 2.4E+02 0.0053 21.0 6.3 70 2-80 1-82 (126)
301 PRK15029 arginine decarboxylas 27.8 95 0.0021 32.0 4.8 43 1-43 1-59 (755)
302 TIGR01819 F420_cofD LPPG:FO 2- 27.7 55 0.0012 29.8 2.8 38 35-78 180-219 (297)
303 cd06312 PBP1_ABC_sugar_binding 27.6 3.8E+02 0.0082 22.7 8.8 55 15-78 22-89 (271)
304 smart00852 MoCF_biosynth Proba 27.6 81 0.0018 24.5 3.5 36 13-48 21-68 (135)
305 PF14359 DUF4406: Domain of un 27.5 1.9E+02 0.0042 21.3 5.3 37 12-48 18-70 (92)
306 PRK01395 V-type ATP synthase s 27.5 1.1E+02 0.0024 23.1 4.1 28 1-32 4-31 (104)
307 PF10087 DUF2325: Uncharacteri 26.9 2.5E+02 0.0055 20.4 8.5 79 2-88 1-93 (97)
308 COG0655 WrbA Multimeric flavod 26.7 1.4E+02 0.0031 25.0 5.1 30 1-30 1-38 (207)
309 PF01820 Dala_Dala_lig_N: D-al 26.7 43 0.00093 25.7 1.7 28 1-29 1-38 (117)
310 PRK02006 murD UDP-N-acetylmura 26.7 2.6E+02 0.0057 26.8 7.6 29 2-30 9-37 (498)
311 PRK05571 ribose-5-phosphate is 26.5 2E+02 0.0043 23.3 5.6 75 1-88 1-79 (148)
312 PF14403 CP_ATPgrasp_2: Circul 25.3 3.3E+02 0.007 26.3 7.7 85 2-88 187-284 (445)
313 PRK08811 uroporphyrinogen-III 25.2 1.1E+02 0.0024 27.1 4.3 78 1-88 19-112 (266)
314 cd06299 PBP1_LacI_like_13 Liga 24.9 3.1E+02 0.0066 23.0 7.0 32 15-46 21-64 (265)
315 cd06282 PBP1_GntR_like_2 Ligan 24.8 3.3E+02 0.0072 22.7 7.2 54 15-78 21-86 (266)
316 PRK10816 DNA-binding transcrip 24.7 1E+02 0.0022 25.2 3.9 44 1-44 1-51 (223)
317 COG0698 RpiB Ribose 5-phosphat 24.6 1.1E+02 0.0025 24.9 3.8 29 1-29 1-32 (151)
318 PRK03806 murD UDP-N-acetylmura 24.4 3.4E+02 0.0073 25.5 7.7 29 2-30 8-36 (438)
319 PF03358 FMN_red: NADPH-depend 24.3 1.5E+02 0.0032 23.1 4.5 30 1-30 1-38 (152)
320 cd06320 PBP1_allose_binding Pe 24.3 4.3E+02 0.0094 22.2 9.1 67 2-77 1-88 (275)
321 cd06301 PBP1_rhizopine_binding 24.0 4.3E+02 0.0094 22.1 8.7 54 15-77 21-87 (272)
322 COG1587 HemD Uroporphyrinogen- 24.0 1.4E+02 0.003 25.9 4.6 82 1-89 2-97 (248)
323 PF13407 Peripla_BP_4: Peripla 23.9 3.9E+02 0.0085 22.3 7.5 57 15-80 20-89 (257)
324 PRK04663 murD UDP-N-acetylmura 23.8 2.4E+02 0.0052 26.6 6.6 28 2-29 9-38 (438)
325 PRK10333 5-formyltetrahydrofol 23.6 39 0.00085 28.1 1.0 49 37-85 109-159 (182)
326 PRK05752 uroporphyrinogen-III 23.6 1.1E+02 0.0024 26.5 4.0 45 2-46 5-64 (255)
327 PRK02228 V-type ATP synthase s 23.5 1.3E+02 0.0029 22.4 3.9 24 1-28 1-24 (100)
328 COG2129 Predicted phosphoester 23.4 2.8E+02 0.0061 24.2 6.2 71 1-86 4-82 (226)
329 PRK01372 ddl D-alanine--D-alan 23.3 1.6E+02 0.0035 26.0 5.0 43 1-44 5-63 (304)
330 PRK03803 murD UDP-N-acetylmura 23.2 3.3E+02 0.0072 25.7 7.4 28 3-30 9-36 (448)
331 PRK13302 putative L-aspartate 23.0 5.3E+02 0.011 22.7 8.3 69 1-80 7-100 (271)
332 cd06319 PBP1_ABC_sugar_binding 22.9 4.5E+02 0.0097 22.1 7.7 32 15-46 21-64 (277)
333 cd01538 PBP1_ABC_xylose_bindin 22.7 4.7E+02 0.01 22.5 7.9 54 15-77 21-86 (288)
334 PRK02705 murD UDP-N-acetylmura 22.5 3.2E+02 0.007 25.7 7.2 28 2-29 2-29 (459)
335 COG3199 Predicted inorganic po 22.4 88 0.0019 29.1 3.1 38 37-85 100-137 (355)
336 cd06273 PBP1_GntR_like_1 This 22.3 3.8E+02 0.0081 22.4 7.0 32 15-46 21-64 (268)
337 PF12724 Flavodoxin_5: Flavodo 22.3 2.1E+02 0.0046 22.3 5.1 38 9-46 8-52 (143)
338 cd06310 PBP1_ABC_sugar_binding 22.2 4.7E+02 0.01 21.9 9.1 67 2-77 1-88 (273)
339 TIGR00288 conserved hypothetic 21.9 1.5E+02 0.0032 24.5 4.1 30 3-32 109-138 (160)
340 cd06267 PBP1_LacI_sugar_bindin 21.8 4.1E+02 0.0089 21.8 7.1 52 15-77 21-84 (264)
341 COG0391 Uncharacterized conser 21.8 84 0.0018 28.9 2.9 41 35-79 187-229 (323)
342 cd00887 MoeA MoeA family. Memb 21.6 2.2E+02 0.0047 26.8 5.7 34 15-48 200-245 (394)
343 COG2185 Sbm Methylmalonyl-CoA 21.6 2.8E+02 0.0061 22.4 5.5 31 15-45 32-71 (143)
344 cd06292 PBP1_LacI_like_10 Liga 21.5 4.1E+02 0.0088 22.4 7.1 57 15-77 21-89 (273)
345 PRK15408 autoinducer 2-binding 21.4 6.1E+02 0.013 22.9 9.0 54 15-77 45-111 (336)
346 TIGR00284 dihydropteroate synt 21.4 2.5E+02 0.0054 27.5 6.2 45 1-45 1-68 (499)
347 TIGR02727 MTHFS_bact 5,10-meth 21.3 54 0.0012 27.1 1.4 49 37-86 115-165 (181)
348 cd05710 SIS_1 A subgroup of th 21.2 3.1E+02 0.0067 20.7 5.6 69 3-80 2-83 (120)
349 TIGR02634 xylF D-xylose ABC tr 21.0 5.2E+02 0.011 22.6 7.9 33 14-46 19-63 (302)
350 PF13241 NAD_binding_7: Putati 20.9 3.5E+02 0.0075 19.9 5.7 47 2-49 9-72 (103)
351 PRK00048 dihydrodipicolinate r 20.6 5.7E+02 0.012 22.2 8.7 28 1-28 2-31 (257)
352 TIGR00393 kpsF KpsF/GutQ famil 20.6 3.8E+02 0.0082 23.0 6.8 71 2-81 2-84 (268)
353 COG0054 RibH Riboflavin syntha 20.2 4.8E+02 0.01 21.3 6.6 73 2-75 14-112 (152)
354 cd01575 PBP1_GntR Ligand-bindi 20.1 5.1E+02 0.011 21.5 7.7 32 15-46 21-64 (268)
No 1
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=100.00 E-value=3.1e-42 Score=300.83 Aligned_cols=247 Identities=73% Similarity=1.152 Sum_probs=203.1
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
|||+||.++|++.+..++|+++|++++++++++++.++|+||||||+++.+..+....++.+.|++++++|+|+||||+|
T Consensus 2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~G 81 (248)
T PLN02832 2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAG 81 (248)
T ss_pred cEEEEEeCCCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChh
Confidence 89999999999999999999999999999998889999999999999888877765457889999999999999999999
Q ss_pred HHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEEEEee
Q 024993 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (259)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~ 160 (259)
||+|++...+...+..+.+|.+|.++.|+.+|+++.||...+++|++||+.+.+..++++|.+.|.+...++.+|++|||
T Consensus 82 mqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy 161 (248)
T PLN02832 82 LIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEY 161 (248)
T ss_pred HHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCCccccccccccccceEEecCCceEeCCCcEEEEEEe
Confidence 99999988542122356799999999999999999999877899999999876556788898888776667789999999
Q ss_pred ecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHhcCCCccCCCCCccceeEEE
Q 024993 161 PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVGEGTSSGGKGTSSGIVVV 240 (259)
Q Consensus 161 ~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (259)
.++..+.. ..+|+++|+ ...++++++.+|++|+|||||++.+.+|+++|++++..-++-++++ -..|.
T Consensus 162 ~~~~~~~~--~~~a~~~y~----~~~~~~aV~qgnvlatqFHPEls~d~rih~~Fl~~~~~~~~~~~~~------~~~~~ 229 (248)
T PLN02832 162 PLPSEKAL--YSSSTDAEG----RDKVIVAVKQGNLLATAFHPELTADTRWHSYFVKMVSESEEYASSS------ELAVA 229 (248)
T ss_pred cccccccc--ccccccccc----CCceEEEEEeCCEEEEEccCccCCccHHHHHHHHHHHHhhhccccc------ccccc
Confidence 86544332 456777775 2368999999999999999999999899999999998755544444 12222
Q ss_pred cccccCCCCCCcCCCCCCC
Q 024993 241 GGENLGFNQQPKIDLPIFQ 259 (259)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ 259 (259)
-=..-...-.|.-||||||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ 248 (248)
T PLN02832 230 KVDESSISLEPPKDLPIFQ 248 (248)
T ss_pred ccccccccccCcccCCCcC
Confidence 2223344557888999998
No 2
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-42 Score=288.18 Aligned_cols=195 Identities=28% Similarity=0.429 Sum_probs=166.8
Q ss_pred CEEEEEec-CCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcC-C-chhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 1 mki~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~G-G-~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|+|+||++ .||+.|+.++|++.|+++++.++++++.++|.||+|| | +++.|+.|++ .++.+.|+++++.++|+|||
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~-~gl~~~i~~~~~~~kP~LGI 80 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRE-RGLIEAIKEAVESGKPFLGI 80 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHh-cchHHHHHHHHhcCCCEEEE
Confidence 78999998 4799999999999999999999999999999999999 7 5778888876 58899999999999999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEE
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (259)
|+|||+|....++ .+..++||+++++|.+.+. ..+++||+|||.++.. .++|+|.++++ .+|
T Consensus 81 ClGMQlLfe~SeE--~~~~~GLg~i~G~V~r~~~--------~~~kvPHMGWN~l~~~------~~~~l~~gi~~~~~~Y 144 (204)
T COG0118 81 CLGMQLLFERSEE--GGGVKGLGLIPGKVVRFPA--------EDLKVPHMGWNQVEFV------RGHPLFKGIPDGAYFY 144 (204)
T ss_pred eHhHHhhhhcccc--cCCCCCcceecceEEEcCC--------CCCCCCccccceeecc------CCChhhcCCCCCCEEE
Confidence 9999999988764 2345899999999998521 2279999999998652 26899999964 799
Q ss_pred EEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHHH
Q 024993 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMM 219 (259)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~~ 219 (259)
|+|||++...++. .++++++|+ ..+.+++.++|++|+|||||++++. ++++||++++
T Consensus 145 FVHSY~~~~~~~~--~v~~~~~YG-----~~f~AaV~k~N~~g~QFHPEKSg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 145 FVHSYYVPPGNPE--TVVATTDYG-----EPFPAAVAKDNVFGTQFHPEKSGKAGLKLLKNFLEWI 203 (204)
T ss_pred EEEEEeecCCCCc--eEEEeccCC-----CeeEEEEEeCCEEEEecCcccchHHHHHHHHHHHhhc
Confidence 9999998763332 577888996 4589999999999999999999876 8999999875
No 3
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=100.00 E-value=1.3e-34 Score=248.82 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=154.4
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcC-Cc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 1 mki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~G-G~-~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|||+|+++. ||+.++.++|+++|++++++++++++.++|+||+|| |. ...+..+++ ..+.+.|++++++++|+|||
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGI 80 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGI 80 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEE
Confidence 899999997 899999999999999999998888888999999999 53 345666654 56778899999999999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEE
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (259)
|+|||+|++..++ +..+++|++++++.+.+. ...+++||+||+.++.+.-..-..++++|.++++ .++
T Consensus 81 ClG~Qll~~~~~~---~~~~glg~~~G~v~~~~~-------~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~ 150 (210)
T CHL00188 81 CLGLHLLFETSEE---GKEEGLGIYKGQVKRLKH-------SPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAY 150 (210)
T ss_pred CHHHHHHhhcccc---CCcCCccceeEEEEECCC-------CCCCccCccCCccceecCCcccccCChhhcCCCCCCEEE
Confidence 9999999998764 467899999999987421 1346899999999875320000001468888865 478
Q ss_pred EEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHH
Q 024993 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKM 218 (259)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~ 218 (259)
++|||.+.+.... .+.+++.++ .+.++++++++++||+|||||++... ++++||+++
T Consensus 151 ~~HS~~v~p~~~~--~l~~t~~~~----~~~~v~a~~~~~i~GvQFHPE~s~~~G~~il~nfl~~ 209 (210)
T CHL00188 151 FVHSYGVMPKSQA--CATTTTFYG----KQQMVAAIEYDNIFAMQFHPEKSGEFGLWLLREFMKK 209 (210)
T ss_pred EeCccEecCCCCc--eEEEEEecC----CcceEEEEecCCEEEEecCCccccHhHHHHHHHHHhh
Confidence 8999987533221 233444442 13578999989999999999998543 899999875
No 4
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=2.4e-34 Score=243.04 Aligned_cols=181 Identities=20% Similarity=0.318 Sum_probs=147.7
Q ss_pred EEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCC-c-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 2 ki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG-~-~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
.|+|+++. ||+.++.++|++.|++++++++++++.++|+||+||+ . .+++..+++ .++.+.|++ ..++|+||||
T Consensus 1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC 77 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC 77 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence 08999985 6899999999999999999998888999999999995 4 556667765 577888887 4699999999
Q ss_pred hhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEEEE
Q 024993 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158 (259)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~H 158 (259)
+|||+|++...+ +..++||++|++|.+. ...+++||+||+.+.. ..+++. ..+||+|
T Consensus 78 lGmQlL~~~~~e---g~~~GLgll~~~V~rf---------~~~~~vph~GWn~~~~--------~~~l~~---~~~yFVh 134 (192)
T PRK13142 78 LGMQLMYEHSDE---GDASGLGFIPGNISRI---------QTEYPVPHLGWNNLVS--------KHPMLN---QDVYFVH 134 (192)
T ss_pred HHHHHHhhhccc---CCcCccCceeEEEEEC---------CCCCCCCcccccccCC--------CCcccc---cEEEEEC
Confidence 999999999843 4568999999999883 2446899999998742 345553 5789999
Q ss_pred eeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHH
Q 024993 159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 217 (259)
Q Consensus 159 s~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~ 217 (259)
||.+. . .. .+++.++|+ ..+.++++++|++|+|||||++++. ++++||++
T Consensus 135 Sy~v~-~-~~--~v~~~~~yg-----~~~~~~v~~~n~~g~QFHPEkS~~~G~~ll~nf~~ 186 (192)
T PRK13142 135 SYQAP-M-SE--NVIAYAQYG-----ADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQ 186 (192)
T ss_pred CCeEC-C-CC--CEEEEEECC-----CeEEEEEEcCCEEEEecCcccCcHhHHHHHHHHHh
Confidence 99883 2 11 577888885 3578889999999999999999875 89999975
No 5
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=2.2e-32 Score=235.02 Aligned_cols=198 Identities=19% Similarity=0.306 Sum_probs=150.5
Q ss_pred EEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 2 ki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
.|+|+++. ||..++.++|+..+.++..++.++++.++|+||+||+- ...+.++++ .++.+.|++++++++|+||||
T Consensus 1 ~i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pilGiC 79 (210)
T PRK14004 1 MIAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNS-TGLRSTIDKHVESGKPLFGIC 79 (210)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHcCCCEEEEC
Confidence 08999984 68999999999999999999998888999999999953 456666754 578899999999999999999
Q ss_pred hhHHHHHHhhcccc----CCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--
Q 024993 79 AGLIFLANKAVGQK----LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 79 ~G~QlL~~~~~~~~----~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
+|+|+|++++++.. .+..++||++++++.+.+. ...++||+||+.++..+. .++++|.++++
T Consensus 80 ~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~--------~~~~~ph~Gw~~v~~~~~----~~~~lf~~l~~~~ 147 (210)
T PRK14004 80 IGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEG--------KDFKVPHIGWNRLQIRRK----DKSKLLKGIGDQS 147 (210)
T ss_pred HhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCC--------CCCcCCccCcccceeccC----CCCccccCCCCCC
Confidence 99999999997531 1237899999999987421 235789999999864210 25678888865
Q ss_pred CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHH
Q 024993 153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKM 218 (259)
Q Consensus 153 ~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~ 218 (259)
.++++|||....... ..+++.++++ +..+.+++.++++||+|||||++.+. +|++||++.
T Consensus 148 ~v~~~HS~~~~~~~~--l~~sa~~~~~----g~~~~a~~~~~~i~GvQFHPE~s~~~G~~iL~nfl~~ 209 (210)
T PRK14004 148 FFYFIHSYRPTGAEG--NAITGLCDYY----QEKFPAVVEKENIFGTQFHPEKSHTHGLKLLENFIEF 209 (210)
T ss_pred EEEEeceeecCCCCc--ceEEEeeeEC----CEEEEEEEecCCEEEEeCCcccCchhHHHHHHHHHhh
Confidence 578899986532211 1344555442 12334555678999999999998853 899999875
No 6
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=100.00 E-value=1.5e-31 Score=226.41 Aligned_cols=186 Identities=47% Similarity=0.716 Sum_probs=146.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
|||+|+.+.|++.+..++|+..|++++.++++++++++|+||+|||....++.+.+...+.+.|+++.++++|+||||+|
T Consensus 2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G 81 (189)
T PRK13525 2 MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAG 81 (189)
T ss_pred CEEEEEEcccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHH
Confidence 89999999999999999999999999999988888899999999997665555544456678999999999999999999
Q ss_pred HHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEEEEE
Q 024993 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVLA 158 (259)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~H 158 (259)
+|+|++++++ +..+++|++|+++.+++++++ .++. ...+++.++++ .+++.|
T Consensus 82 ~QlL~~~~gg---~~~~~lg~~~~~v~~~~~g~~------------~g~~-----------~~~~~~~~~~~~~~~~~~H 135 (189)
T PRK13525 82 MILLAKEIEG---YEQEHLGLLDITVRRNAFGRQ------------VDSF-----------EAELDIKGLGEPFPAVFIR 135 (189)
T ss_pred HHHHHhhccc---CCCCceeeEEEEEEEccCCCc------------eeeE-----------EecccccCCCCCeEEEEEe
Confidence 9999999975 257899999999987644321 1211 12344555533 456778
Q ss_pred eeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHh
Q 024993 159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 221 (259)
Q Consensus 159 s~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~ 221 (259)
++.+...+... .++|+++. ..++++.+++||+|||||++.+.+|++||+++|++
T Consensus 136 ~d~v~~lp~~~-~vlA~~~~--------~~~~~~~~~~~g~QfHPE~~~~~~~~~~f~~~~~~ 189 (189)
T PRK13525 136 APYIEEVGPGV-EVLATVGG--------RIVAVRQGNILATSFHPELTDDTRVHRYFLEMVKE 189 (189)
T ss_pred CceeeccCCCc-EEEEEcCC--------EEEEEEeCCEEEEEeCCccCCCchHHHHHHHHhhC
Confidence 87775444432 68888753 34567788999999999999888999999999864
No 7
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=1.2e-31 Score=230.35 Aligned_cols=195 Identities=23% Similarity=0.325 Sum_probs=147.6
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCC--eEEEeCCCCCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHH-HHcCCcE
Q 024993 1 MVVGVLALQ-GSFNEHIAALKRLGV--KGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREF-VKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~-G~~~~~~~~L~~~G~--~v~~~~~~~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~-~~~g~Pi 74 (259)
|||+|+++. ||..++.++|++.|+ ++.+++++++++++|+||+||+. .+.+..+++ ..+.+.+++. .++++|+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~Pv 80 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRA-VGLGEAVIEAVLAAGRPF 80 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHH-CCcHHHHHHHHHhCCCcE
Confidence 899999985 578899999999999 88888888889999999999963 233445554 3445555444 4689999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEee-ccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC-
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~- 152 (259)
||||+|+|+|+.+..+ .+...++|++++++.++ +.+ ...++|++||+.+... .++|+|.++++
T Consensus 81 lGiC~G~q~l~~~~~e--~~~~~glg~l~g~v~~~~~~~-------~~~~~p~~G~~~v~~~------~~~~lf~~~~~~ 145 (209)
T PRK13146 81 LGICVGMQLLFERGLE--HGDTPGLGLIPGEVVRFQPDG-------PALKVPHMGWNTVDQT------RDHPLFAGIPDG 145 (209)
T ss_pred EEECHHHHHHhhcccc--cCCCCCcceEeEEEEEcCCCC-------CCCccCccChHHeeeC------CCChhccCCCCC
Confidence 9999999999997432 23578999999999875 211 2246889999987642 25789988864
Q ss_pred -CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHH
Q 024993 153 -DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKM 218 (259)
Q Consensus 153 -~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~ 218 (259)
.++++||+.+...+.. .++|+++++ ..+++++.++++||+|||||++... ++++||++.
T Consensus 146 ~~v~~~Hs~~v~~~~~~--~~la~s~~~-----~~~~a~~~~~~i~GvQFHPE~s~~~G~~ll~nfl~~ 207 (209)
T PRK13146 146 ARFYFVHSYYAQPANPA--DVVAWTDYG-----GPFTAAVARDNLFATQFHPEKSQDAGLALLRNFLAW 207 (209)
T ss_pred CEEEEEeEEEEEcCCCC--cEEEEEcCC-----CEEEEEEecCCEEEEEcCCcccHHHHHHHHHHHHhh
Confidence 5778999988654432 688888764 2345555677999999999998543 899999876
No 8
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=2.1e-31 Score=226.82 Aligned_cols=188 Identities=23% Similarity=0.428 Sum_probs=145.2
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcC-Cc-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 1 mki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~G-G~-~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|||+|+++. ||+.++.++|++.|++++++++++++.++|+||+|| |. .+.+..+++ ..+.+.|++ .++|+|||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~-~~l~~~i~~---~~~PilGI 76 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRE-RELIDLIKA---CTQPVLGI 76 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHH-cChHHHHHH---cCCCEEEE
Confidence 999999975 578899999999999999999888888999999999 64 345556644 455666654 48999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEE
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (259)
|+|+|+|+.++++. +...+||++++++.+.+. ...++|++||+.+... .+++++.++++ .++
T Consensus 77 ClG~Qll~~~~~~~--~~~~~lg~~~g~v~~~~~--------~~~~~p~~G~~~v~~~------~~~~l~~~l~~~~~v~ 140 (196)
T PRK13170 77 CLGMQLLGERSEES--GGVDCLGIIDGPVKKMTD--------FGLPLPHMGWNQVTPQ------AGHPLFQGIEDGSYFY 140 (196)
T ss_pred CHHHHHHhhhcccC--CCCCCcccccEEEEECCC--------CCCCCCccccceeEeC------CCChhhhCCCcCCEEE
Confidence 99999999998642 236789999999987421 1247889999987542 25678888754 577
Q ss_pred EEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHH
Q 024993 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 217 (259)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~ 217 (259)
++|+|.+.+ . ..++|+++++ ..+++.++.+++||+|||||++... +|++||++
T Consensus 141 ~~Hs~~lp~--~--~~~la~s~~~-----~~~~~~~~~~~i~G~QFHPE~~~~~G~~~l~nfl~ 195 (196)
T PRK13170 141 FVHSYAMPV--N--EYTIAQCNYG-----EPFSAAIQKDNFFGVQFHPERSGAAGAQLLKNFLE 195 (196)
T ss_pred EECeeecCC--C--CcEEEEecCC-----CeEEEEEEcCCEEEEECCCCCcccccHHHHHHHhh
Confidence 889987532 1 2577887764 3566677788999999999998654 89999985
No 9
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=9.2e-31 Score=223.23 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=149.1
Q ss_pred EEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 2 ki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+|+|+++. ||+.++.++|+++|++++++++++++.++|+||+||+. ...+.++.. .++.+.|+++++.++|+||||
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PvlGiC 79 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVLGIC 79 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHH-CChHHHHHHHHHCCCCEEEEC
Confidence 19999985 57888999999999999999888888899999999953 233444443 467788999999999999999
Q ss_pred hhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEEE
Q 024993 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDV 156 (259)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~ 156 (259)
+|+|+|+.++++ +...+||++++++.+.+.+ ..+.+++||+.++.. .++|+|.++++ .++.
T Consensus 80 ~G~Qll~~~~~~---~~~~glg~l~~~v~~~~~~--------~~~~~~~G~~~v~~~------~~~~lf~~l~~~~~~~~ 142 (199)
T PRK13181 80 LGMQLLFESSEE---GNVKGLGLIPGDVKRFRSE--------PLKVPQMGWNSVKPL------KESPLFKGIEEGSYFYF 142 (199)
T ss_pred HhHHHhhhhccc---CCcCCcceEEEEEEEcCCC--------CCCCCccCccccccC------CCChhHcCCCCCCEEEE
Confidence 999999999864 4678999999999875311 124678899887642 25788888865 4678
Q ss_pred EEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHH
Q 024993 157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 217 (259)
Q Consensus 157 ~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~ 217 (259)
+|++++...+.. .++|+++++ +.++++++.+++||+|||||++... .+++||++
T Consensus 143 ~Hs~~v~~~~~~--~~lA~s~~~-----~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~nfl~ 198 (199)
T PRK13181 143 VHSYYVPCEDPE--DVLATTEYG-----VPFCSAVAKDNIYAVQFHPEKSGKAGLKLLKNFAE 198 (199)
T ss_pred eCeeEeccCCcc--cEEEEEcCC-----CEEEEEEECCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 899988655432 678888763 3566777788999999999988543 89999985
No 10
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=3.6e-30 Score=219.96 Aligned_cols=192 Identities=21% Similarity=0.366 Sum_probs=144.9
Q ss_pred EEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHH-HHcCCcEEEE
Q 024993 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREF-VKMGKPVWGT 77 (259)
Q Consensus 2 ki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~-~~~g~PiLGI 77 (259)
.|+|+++. ||..++.++|++.|++++++++++++.++|+||+||+. .+.+..+++ .++.+.|+++ +++++|+|||
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~-~~~~~~l~~~~~~~~~pvlGi 79 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKE-LGFIEALKEQVLVQKKPILGI 79 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHhCCCcEEEE
Confidence 08999985 57889999999999999999988888899999999953 344555543 4556677665 4789999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEE
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (259)
|+|+|+|+.+..+ .+..++||++++++.+.+. ....++++.||+.++.. .++++|.++++ .++
T Consensus 80 C~G~Q~l~~~~~~--~~~~~~lg~~~g~v~~~~~-------~~~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~ 144 (201)
T PRK13152 80 CLGMQLFLERGYE--GGVCEGLGFIEGEVVKFEE-------DLNLKIPHMGWNELEIL------KQSPLYQGIPEKSDFY 144 (201)
T ss_pred CHhHHHHhhcccc--cCCcCCcccccEEEEECCC-------CCCCcCCccCeEEEEEC------CCChhhhCCCCCCeEE
Confidence 9999999997321 1357889999999976320 01235778999987532 25678888765 578
Q ss_pred EEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHH
Q 024993 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 217 (259)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~ 217 (259)
++||+++...+. .+.|++.++ ...+++++.+++||+|||||++.+. ++++||++
T Consensus 145 ~vHS~~v~~~~~---~v~a~~~~g-----~~~~~a~~~~~i~GvQFHPE~~~~~g~~ll~~Fl~ 200 (201)
T PRK13152 145 FVHSFYVKCKDE---FVSAKAQYG-----HKFVASLQKDNIFATQFHPEKSQNLGLKLLENFAR 200 (201)
T ss_pred EEcccEeecCCC---cEEEEECCC-----CEEEEEEecCCEEEEeCCCeecChhhHHHHHHHHh
Confidence 899999865432 456776664 3466788888999999999998653 89999985
No 11
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=1.7e-29 Score=215.69 Aligned_cols=193 Identities=22% Similarity=0.342 Sum_probs=145.3
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 1 mki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|||+||++. |+..++.++|+++|+++++++++++++++|+||+|||. ++..+++. .+.+.|++++++++|+|||
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~---~~~~~i~~~~~~~~PilgI 77 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLS---PLRDVILEAARSGKPFLGI 77 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHH---HHHHHHHHHHHcCCCEEEE
Confidence 999999986 45668889999999999999877778899999999952 33344443 4578899999999999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC-CEEE
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDV 156 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-~~~~ 156 (259)
|+|+|+|++++.+ +...+++|++++++.+.+ ...+.++.||..+... .++|++.+++. .+++
T Consensus 78 C~G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~---------~~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~ 140 (200)
T PRK13143 78 CLGMQLLFESSEE--GGGVRGLGLFPGRVVRFP---------AGVKVPHMGWNTVKVV------KDCPLFEGIDGEYVYF 140 (200)
T ss_pred CHHHHHHhhhhcc--CCCCCCcceeeEEEEEcC---------CCCCCCeecceEEEEc------CCChhhccCCCcEEEE
Confidence 9999999998753 245788999999987642 1123456788776432 25678777743 3567
Q ss_pred EEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHHHH
Q 024993 157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMS 220 (259)
Q Consensus 157 ~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~~~ 220 (259)
+|++++...+. ..++|+++++ ...++++..+++||+|||||++.+. +|+++|++.++
T Consensus 141 ~Hs~~~~~~~~--~~~la~~~~~-----~~~~~~~~~~~~~gvQfHPE~~~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 141 VHSYYAYPDDE--DYVVATTDYG-----IEFPAAVCNDNVFGTQFHPEKSGETGLKILENFVELIK 199 (200)
T ss_pred EeeeeeCCCCc--ceEEEEEcCC-----CEEEEEEEcCCEEEEeCCCccchHHHHHHHHHHHHHHh
Confidence 89998865433 2678887753 2455666677999999999998654 89999998774
No 12
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.96 E-value=1.8e-28 Score=201.70 Aligned_cols=191 Identities=51% Similarity=0.823 Sum_probs=157.0
Q ss_pred CEEEEEecCCChHHHHHHHHhCC-CeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 1 MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G-~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
|||+||.++|++.+-.++|++++ +++..++.+++++..|++|||||.++.+..|..+.++.+.|++++.+|+|++|.|+
T Consensus 1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCA 80 (194)
T COG0311 1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCA 80 (194)
T ss_pred CeEEEEEecccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEech
Confidence 99999999999999999999994 99999999999999999999999998888877767889999999999999999999
Q ss_pred hHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEEEEe
Q 024993 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD 159 (259)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs 159 (259)
|+-+|++...+ +...+.||++|.+|.||.||++..||+..+.+...+-. ..+.++|++.|++...++.+
T Consensus 81 GlIlLakei~~--~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~----~~~~avFIRAP~I~~vg~~V----- 149 (194)
T COG0311 81 GLILLAKEILD--GPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLP----FPFPAVFIRAPVIEEVGDGV----- 149 (194)
T ss_pred hhhhhhhhhcC--CCCCcccceEEEEEEccccccccccceeeEEeecccCC----CcceEEEEEcceeehhcCcc-----
Confidence 99999988753 14568899999999999999999999865555433311 01345677777765543333
Q ss_pred eecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHh
Q 024993 160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 221 (259)
Q Consensus 160 ~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~ 221 (259)
+++|+-++ .+.+++.+|++|+.||||+|.+.++.+.|++.+..
T Consensus 150 -----------~vLa~l~~--------~iVav~qgn~LatsFHPELT~D~r~Heyf~~~v~~ 192 (194)
T COG0311 150 -----------EVLATLDG--------RIVAVKQGNILATSFHPELTDDTRLHEYFLDMVLG 192 (194)
T ss_pred -----------eEeeeeCC--------EEEEEEeCCEEEEecCccccCCccHHHHHHHHhhc
Confidence 45565433 57788888999999999999988888888877653
No 13
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=2.5e-28 Score=209.09 Aligned_cols=196 Identities=23% Similarity=0.352 Sum_probs=146.0
Q ss_pred EEEEEecCC-ChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 2 VVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 2 ki~vl~~~G-~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+|+|+++.+ +..++.++|++.|+++.++++++++.++|+||+|||. .+....+. .+++.++|++++++++|+||||
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~-~~~~~~~i~~~~~~~~pvlGIC 79 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLR-ERGLDEVIKEAVASGKPLLGIC 79 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHH-HcChHHHHHHHHHCCCcEEEEC
Confidence 588999865 4557889999999999999888888899999999963 22333332 2467889999999999999999
Q ss_pred hhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEEE
Q 024993 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDV 156 (259)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~ 156 (259)
+|+|+|+.++.+ .+...+||++++++.+.+.+ ....+++.||..+..+ .+++++..++. .++.
T Consensus 80 ~G~Qll~~~~~~--~~~~~~lg~l~g~v~~~~~~-------~~~~~~~~g~~~i~~~------~~~~l~~~l~~~~~v~~ 144 (205)
T PRK13141 80 LGMQLLFESSEE--FGETEGLGLLPGRVRRFPPE-------EGLKVPHMGWNQLELK------KESPLLKGIPDGAYVYF 144 (205)
T ss_pred HHHHHhhhcccc--CCCCCccceEEEEEEEcCCC-------CCCcccEecCccceeC------CCChhhhCCCCCCEEEE
Confidence 999999998743 24678999999999875311 1134668888877542 25788888765 4667
Q ss_pred EEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHHHH
Q 024993 157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMS 220 (259)
Q Consensus 157 ~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~~~ 220 (259)
+|++++...+. ..++|+++++ ..+++....+++||+|||||+.... .+++||++.|+
T Consensus 145 ~Hs~~v~~~~~--~~v~a~~~~~-----~~~~a~~~~~~i~GvQfHPE~~~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 145 VHSYYADPCDE--EYVAATTDYG-----VEFPAAVGKDNVFGAQFHPEKSGDVGLKILKNFVEMVE 203 (205)
T ss_pred ECeeEeccCCc--CeEEEEEeCC-----cEEEEEEecCCEEEEeCCCccchHHHHHHHHHHHHHhh
Confidence 89998864433 2677876643 2344444567899999999987643 89999998874
No 14
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=1e-28 Score=210.33 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=141.6
Q ss_pred EEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc-h-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 3 VGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE-S-TTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 3 i~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~-~-~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
|+|+++. |+..++.++|+++|++++++++.++++++|+||+||+. . ..++.+. ...+.+.|++++++++|+||||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~~-~~~~~~~i~~~~~~~~pilGiC~ 79 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLR-ERGLIEALKEAIASGKPFLGICL 79 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHHH-HcChHHHHHHHHHCCCcEEEECH
Confidence 5789885 45667889999999999999987788899999999953 2 2233342 24568999999999999999999
Q ss_pred hHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEEEE
Q 024993 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL 157 (259)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~ 157 (259)
|+|+|+.++.+ .+..+++|++++++.+.+.+ ...+.+++||..+... .++++|.++++ .++.+
T Consensus 80 G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~~~-------~~~~~~~~G~~~v~~~------~~~~lf~~l~~~~~v~~~ 144 (198)
T cd01748 80 GMQLLFESSEE--GGGTKGLGLIPGKVVRFPAS-------EGLKVPHMGWNQLEIT------KESPLFKGIPDGSYFYFV 144 (198)
T ss_pred HHHHhcccccc--CCCCCCCCCcceEEEECCCC-------CCceEEEeccceEEEC------CCChhhhCCCCCCeEEEE
Confidence 99999998743 23478899999999874210 0123568899876532 25678888865 46778
Q ss_pred EeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHH
Q 024993 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFL 216 (259)
Q Consensus 158 Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl 216 (259)
|++++..++. ..++|+++++ ..+++....+++||+|||||++.+. .+++||+
T Consensus 145 Hs~~v~~~~~--~~~la~s~~~-----~~~~~~~~~~~i~GvQFHPE~~~~~g~~~~~nf~ 198 (198)
T cd01748 145 HSYYAPPDDP--DYILATTDYG-----GKFPAAVEKDNIFGTQFHPEKSGKAGLKLLKNFL 198 (198)
T ss_pred eEEEEecCCc--ceEEEEecCC-----CeEEEEEEcCCEEEEECCCccccHhHHHHHHhhC
Confidence 9998865443 2678887654 2344555677899999999998643 7888884
No 15
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.96 E-value=2.4e-28 Score=206.02 Aligned_cols=183 Identities=48% Similarity=0.770 Sum_probs=137.0
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
||+|+.++|++.+..++|+++|+++++++++++++++|+||+|||+...+..+.+...+.+.|++++++++|+||||+|+
T Consensus 1 ~igvl~~qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 1 KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred CEEEEEccCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 69999999999999999999999999999888889999999999977665555444567889999999999999999999
Q ss_pred HHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEEEEeee
Q 024993 82 IFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161 (259)
Q Consensus 82 QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~ 161 (259)
|+|++++.+.. ...+|++++++.++++|+++.++...+..... .++|+. ..+.|...
T Consensus 81 qlL~~~~~~~~---~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~--------------~~~~~~------~~~~h~~~ 137 (184)
T TIGR03800 81 IMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAEVDIKGV--------------GDDPIT------GVFIRAPK 137 (184)
T ss_pred HHHHhhhccCC---CCccCcEEEEEEeeccCCccccEEEEeecccC--------------CCCcce------EEEEcCCC
Confidence 99999985422 13599999999987766544443211111000 011221 12566665
Q ss_pred cCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHH
Q 024993 162 VPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFL 216 (259)
Q Consensus 162 ~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl 216 (259)
+...+.+. .++|+++. .+.+++.+++||+|||||++.+.++++.|+
T Consensus 138 v~~lp~~~-~vla~~~~--------~~~a~~~~~~~gvQfHPE~~~~~~~~~~f~ 183 (184)
T TIGR03800 138 IVSVGNGV-EILAKVGN--------RIVAVRQGNILVSSFHPELTDDHRVHEYFL 183 (184)
T ss_pred cccCCCCe-EEEEEeCC--------eeEEEEeCCEEEEEeCCccCCCchHHHHhh
Confidence 55444443 67888654 345668789999999999998778999887
No 16
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.96 E-value=3.3e-28 Score=233.68 Aligned_cols=199 Identities=25% Similarity=0.332 Sum_probs=154.0
Q ss_pred EEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 2 ki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
||+|+++. ||..++.++|+++|+++.++++++++.++|+||+||+. ...+..+.. .++.+.|+++++.++|+||||
T Consensus 8 ~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~-~gl~~~i~~~i~~g~PvLGIC 86 (538)
T PLN02617 8 EVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNN-RGMAEALREYIQNDRPFLGIC 86 (538)
T ss_pred eEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHH-cCHHHHHHHHHHcCCCEEEEC
Confidence 68999974 68899999999999999999888888999999999953 344556654 467889999999999999999
Q ss_pred hhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC-CEEEE
Q 024993 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDVL 157 (259)
Q Consensus 79 ~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-~~~~~ 157 (259)
+|+|+|+.++.+ .+...+||++++++.+.+. ...+++||+||+.+... .++|++.++++ .++++
T Consensus 87 ~G~QlLa~~~~E--~g~~~glg~l~G~v~~~~~-------~~~~~vp~iGw~~V~~~------~~spL~~~l~~~~vy~v 151 (538)
T PLN02617 87 LGLQLLFESSEE--NGPVEGLGVIPGVVGRFDS-------SNGLRVPHIGWNALQIT------KDSELLDGVGGRHVYFV 151 (538)
T ss_pred HHHHHHhhhhhh--cCCccCcccccceEEECCc-------cCCCCCCeecceEEEec------CCChhHhcCCCcEEEEE
Confidence 999999998743 2457899999999887421 02357899999987542 25788877743 57889
Q ss_pred EeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHHHHh
Q 024993 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMSE 221 (259)
Q Consensus 158 Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~~~~ 221 (259)
|||++...+.....+.++++++ ..++++++++++||+|||||++... +++++|++.+..
T Consensus 152 HSy~v~~~p~~~~~v~a~~~~g-----~~~IaAI~~gnI~GVQFHPE~s~~~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 152 HSYRATPSDENKDWVLATCNYG-----GEFIASVRKGNVHAVQFHPEKSGATGLSILRRFLEPKSS 212 (538)
T ss_pred eEEEEEecCCCCcEEEEEEccC-----CCcEEEEEeCCEEEEEcCCccCchhHHHHHHHHHHhhhh
Confidence 9998643332211345665553 3578899999999999999998743 899999987763
No 17
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.96 E-value=3.5e-28 Score=202.58 Aligned_cols=176 Identities=44% Similarity=0.746 Sum_probs=143.6
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
|||+||.++|++.+..++|++.|+++.+++.+++++++|+||+|||....+..+.++.++.+.|+++++ ++|++|||+|
T Consensus 3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG 81 (179)
T PRK13526 3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAG 81 (179)
T ss_pred cEEEEEECCccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHH
Confidence 799999999999999999999999999999988899999999999965443333333578899999885 7899999999
Q ss_pred HHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEEEEee
Q 024993 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (259)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~ 160 (259)
+|+|++.. .+||++|+++.++.+|++..||...+.++ .. +++++|++.|.+...++++.++.+|
T Consensus 82 ~qlL~~~s--------~~Lg~idg~V~Rn~~Grq~~sf~~~~~~~-----~~---~~~~vFiRAP~i~~~~~~v~vla~~ 145 (179)
T PRK13526 82 SIILSKGE--------GYLNLLDLEVQRNAYGRQVDSFVADISFN-----DK---NITGVFIRAPKFIVVGNQVDILSKY 145 (179)
T ss_pred HHHHHccC--------CCCCCccEEEEEcCCCCccceeeeecCcC-----Cc---eEEEEEEcCceEeEcCCCcEEEEEE
Confidence 99999853 47999999999999999888876544433 22 2678888888887666666554443
Q ss_pred ecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHH
Q 024993 161 PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 217 (259)
Q Consensus 161 ~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~ 217 (259)
+ ..+.+++.+|++|+-||||+|.+.+|.+.|++
T Consensus 146 ----------------~--------~~~v~v~q~~~l~~~FHPElt~d~r~h~~f~~ 178 (179)
T PRK13526 146 ----------------Q--------NSPVLLRQANILVSSFHPELTQDPTVHEYFLA 178 (179)
T ss_pred ----------------C--------CEEEEEEECCEEEEEeCCccCCCchHHHHHhc
Confidence 2 24678999999999999999999899998885
No 18
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.96 E-value=1.1e-27 Score=204.56 Aligned_cols=188 Identities=41% Similarity=0.637 Sum_probs=136.3
Q ss_pred CEEEEEecCCChHH----HHHHHHhCCCeEEEe--CCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSFNE----HIAALKRLGVKGVEI--RKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~~----~~~~L~~~G~~v~~~--~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
|||+|+.+.|+..+ +.++|++.|+++.++ +.++++.++|+||+|||+....+++.+...+.+.|++++++++|+
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi 80 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI 80 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence 99999999998774 446788889866654 445567899999999997665544444456789999999999999
Q ss_pred EEEchhHHHHHHhhccc--cCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC
Q 024993 75 WGTCAGLIFLANKAVGQ--KLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~--~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~ 152 (259)
||||+|+|+|+.++++. .....+++|+++.++.+++.| |.... +...+++.++++
T Consensus 81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g----------------~~~~~-------~~~~~~~~~~~~ 137 (200)
T PRK13527 81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFG----------------RQRDS-------FEAEIDLSGLDG 137 (200)
T ss_pred EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeecccc----------------Ccccc-------EEEeEeccccCC
Confidence 99999999999998752 223456799999988764322 11100 012344555544
Q ss_pred C--EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHH
Q 024993 153 D--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 220 (259)
Q Consensus 153 ~--~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~ 220 (259)
. ++++|++.+...+.. ..++|+++++ .++++.+++||+|||||++.+.+|+++|+..+.
T Consensus 138 ~~~~~~~H~~~v~~lp~~-~~~la~~~~~--------~~a~~~~~~~g~QfHPE~~~~~~l~~~f~~~~~ 198 (200)
T PRK13527 138 PFHAVFIRAPAITKVGGD-VEVLAKLDDR--------IVAVEQGNVLATAFHPELTDDTRIHEYFLKKVK 198 (200)
T ss_pred cceEEEEccccccccCCC-eEEEEEECCE--------EEEEEECCEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 4 456788776543433 2788877653 346677899999999999988899999998763
No 19
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.96 E-value=5.4e-28 Score=205.82 Aligned_cols=188 Identities=27% Similarity=0.396 Sum_probs=141.7
Q ss_pred EEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCC-c-hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 3 VGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 3 i~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG-~-~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
|+|+++. ||...+.++|+++|+++++++++++++++|+||+||+ . .+.++++.+. .....++++++.++|+||||+
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~-~~~~l~~~~~~~~~pvlGiC~ 79 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLREN-GLDLFVELVVRLGKPVLGICL 79 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHc-CcHHHHHHHHhCCCCEEEECH
Confidence 5788874 6788899999999999999998777889999999994 3 2345566542 233444888889999999999
Q ss_pred hHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEEEE
Q 024993 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL 157 (259)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~ 157 (259)
|+|+|++++.+ .+..++||++++++.+.+. .+.+++||..+... .++|+|.++++ .++.+
T Consensus 80 G~Qll~~~~~~--~~~~~glg~~~~~v~~~~~----------~~~~~~g~~~~~~~------~~~~l~~~l~~~~~v~~~ 141 (196)
T TIGR01855 80 GMQLLFERSEE--GGGVPGLGLIKGNVVKLEA----------RKVPHMGWNEVHPV------KESPLLNGIDEGAYFYFV 141 (196)
T ss_pred HHHHhhhcccc--CCCCCCcceeeEEEEECCC----------CCCCcccCeeeeeC------CCChHHhCCCCCCEEEEE
Confidence 99999999743 3567899999999987421 14668888876431 25678888865 46678
Q ss_pred EeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHH
Q 024993 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 217 (259)
Q Consensus 158 Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~ 217 (259)
|++.+...+ . .++|.++++ ..+++.++.+++||+|||||++... ++++||++
T Consensus 142 Hs~~v~~~~-~--~~~a~~~~g-----~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~~f~~ 195 (196)
T TIGR01855 142 HSYYAVCEE-E--AVLAYADYG-----EKFPAAVQKGNIFGTQFHPEKSGKTGLKLLENFLE 195 (196)
T ss_pred CeeEecCCC-C--cEEEEEcCC-----cEEEEEEecCCEEEEECCCccCcHhHHHHHHHHHh
Confidence 998876443 2 456666543 3566777788999999999988643 89999985
No 20
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.96 E-value=2e-27 Score=200.30 Aligned_cols=180 Identities=52% Similarity=0.807 Sum_probs=137.0
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHH
Q 024993 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (259)
Q Consensus 3 i~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~Q 82 (259)
|+|+.++|++.+..++|++.|++++.+++.++++++|+||++||....++.+.+...+.+.|++++++++|+||||+|+|
T Consensus 1 igvl~~qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q 80 (183)
T cd01749 1 IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI 80 (183)
T ss_pred CEEEEecCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH
Confidence 57888899999999999999999999998888899999999999766555444445678889999999999999999999
Q ss_pred HHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccC---CCCEEEEEe
Q 024993 83 FLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV---GPDVDVLAD 159 (259)
Q Consensus 83 lL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~---~~~~~~~Hs 159 (259)
+|++++++. +..+++|++|.++.++++|++..++... ..+.+. +...++.|.
T Consensus 81 lL~~~~~~~--~~~~glG~~~~~v~~~~~g~~~g~~~~~-----------------------l~~~~~~~~~~~~~~~h~ 135 (183)
T cd01749 81 LLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEAD-----------------------LDIPGLGLGPFPAVFIRA 135 (183)
T ss_pred HHHHHhccc--CCCCccCceeEEEEeeccccccceEEEc-----------------------CCCCcCCCCccEEEEEEC
Confidence 999999754 4678999999999887655433322111 111121 123456777
Q ss_pred eecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHH
Q 024993 160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFL 216 (259)
Q Consensus 160 ~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl 216 (259)
..+...++. .+++|+++. .+++++.+++||+|||||++.+.++++.|+
T Consensus 136 ~~v~~~p~~-~~~la~~~~--------~~~a~~~~~~~g~qfHPE~~~~~~~~~~f~ 183 (183)
T cd01749 136 PVIEEVGPG-VEVLAEYDG--------KIVAVRQGNVLATSFHPELTDDTRIHEYFL 183 (183)
T ss_pred cEEEEcCCC-cEEEEecCC--------EEEEEEECCEEEEEcCCccCCCcchhhhhC
Confidence 766433333 278888754 345788789999999999998778888874
No 21
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.95 E-value=4.5e-27 Score=195.40 Aligned_cols=183 Identities=58% Similarity=0.976 Sum_probs=145.1
Q ss_pred EEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcC-CcEEEEchhHHH
Q 024993 5 VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIF 83 (259)
Q Consensus 5 vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g-~PiLGIC~G~Ql 83 (259)
||+++|++.+-.++|+++|++...++.+++|+++|+||+|||.++.+..+....++.+.|+++++.| +|+||.|+|+-+
T Consensus 1 VLALQG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 1 VLALQGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp EESSSSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred CCccccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 6889999999999999999999999999999999999999999988888777688999999999998 999999999999
Q ss_pred HHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCC--CCEEEEEeee
Q 024993 84 LANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG--PDVDVLADYP 161 (259)
Q Consensus 84 L~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~--~~~~~~Hs~~ 161 (259)
|++...+ .....||++|.+|.||.||++..||...+.++..+ .+++++|++.|.+..+. +.+.
T Consensus 81 La~~v~~---~~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~------~~~~avFIRAP~I~~v~~~~~v~------ 145 (188)
T PF01174_consen 81 LAKEVEG---QGQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLG------EPFPAVFIRAPVIEEVGSPEGVE------ 145 (188)
T ss_dssp HEEEECS---SCCTSS--EEEEEETTTTCSSSCEEEEEEEETTTE------SEEEEEESS--EEEEE--TTTEE------
T ss_pred hhhhhhh---cccccccceeEEEEccccccchhcEEEEEEeecCC------CcEEEEEcCCcEEEEeecccccc------
Confidence 9998864 35678999999999999999999998777666554 23678888888776553 2332
Q ss_pred cCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCc-hHHHHHHHHHHH
Q 024993 162 VPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWHSYFLKMMS 220 (259)
Q Consensus 162 ~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~-~~i~~nfl~~~~ 220 (259)
++|+.+ ..+.+++.+|++++-||||+|.+ .+|.+.|++++.
T Consensus 146 ----------vla~~~--------g~iVav~qgn~latsFHPELT~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 146 ----------VLAELD--------GKIVAVRQGNILATSFHPELTDDDTRIHEYFLEMVV 187 (188)
T ss_dssp ----------EEEEET--------TEEEEEEETTEEEESS-GGGSSTHCHHHHHHHHHHC
T ss_pred ----------cccccc--------cceEEEEecCEEEEEeCCcccCchhHHHHHHHHHhh
Confidence 334322 24667889999999999999999 799999999874
No 22
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.95 E-value=8.8e-27 Score=197.36 Aligned_cols=173 Identities=18% Similarity=0.253 Sum_probs=118.7
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCC----CCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRK----PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~----~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|||+|+++.++|.. +.++|+++|+++.+++. +++++++|+||++||+... ++. ..+.++|++ +++++|+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~-~~~---~~~~~~i~~-~~~~~PiL 76 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVP-RAY---PQLFAMLER-YHQHKSIL 76 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCCh-HHh---hHHHHHHHH-hcCCCCEE
Confidence 89999999999885 56899999999998873 2356789999998876432 111 123566765 56799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (259)
|||+|+|+|+.++|+ ++.+.+ +.++.+|+.+... .++++|.++++.
T Consensus 77 GIClG~Qlla~~~Gg--------------~V~~~~------------~~~~g~~~~v~~~------~~~~l~~~~~~~~~ 124 (190)
T PRK06895 77 GVCLGHQTLCEFFGG--------------ELYNLN------------NVRHGQQRPLKVR------SNSPLFDGLPEEFN 124 (190)
T ss_pred EEcHHHHHHHHHhCC--------------eEeecC------------CCccCceEEEEEC------CCChhhhcCCCceE
Confidence 999999999999963 444321 2334445443211 256888888664
Q ss_pred EEEEEeeecCCcc-cCCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHHH
Q 024993 154 VDVLADYPVPSNK-VLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 154 ~~~~Hs~~~~~~~-~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
++++|++.+.... +....++|.++ ...+++++++ ++||+|||||....+ .+++||++
T Consensus 125 v~~~Hs~~v~~~~lp~~l~~~a~~~-------~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 125 IGLYHSWAVSEENFPTPLEITAVCD-------ENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred EEcchhheecccccCCCeEEEEECC-------CCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHHHh
Confidence 5567998875322 11113444432 2467888765 499999999964332 89999986
No 23
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=2.9e-26 Score=190.97 Aligned_cols=171 Identities=22% Similarity=0.285 Sum_probs=121.0
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CC--CCcCEEEEcCC--chhHHHHHHhhCCHHHHHHHHHHcC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l--~~~d~iil~GG--~~~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
|+|+++++.++|.. +.++|++.|+++.++++++ .+ .++|+||++-| .+.... -..+.|+++ ...
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G------~~~~~i~~~-~~~ 74 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAG------ISLELIRRF-AGR 74 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcc------hHHHHHHHh-cCC
Confidence 67999999999995 6699999999999988752 12 36899999554 443221 145778877 567
Q ss_pred CcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeee-cCcccccC
Q 024993 72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFI-RAPAVLDV 150 (259)
Q Consensus 72 ~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~pl~~~~ 150 (259)
+|+||||+|||.|+.++|+ ++.+.+ .+.+|-.+. +.+ ...+|.++
T Consensus 75 ~PiLGVCLGHQai~~~fGg--------------~V~~a~-------------~~~HGK~s~-------i~h~g~~iF~gl 120 (191)
T COG0512 75 IPILGVCLGHQAIAEAFGG--------------KVVRAK-------------EPMHGKTSI-------ITHDGSGLFAGL 120 (191)
T ss_pred CCEEEECccHHHHHHHhCC--------------EEEecC-------------CCcCCeeee-------eecCCcccccCC
Confidence 9999999999999999963 555421 112232211 112 35789999
Q ss_pred CCC--EEEEEeeecCCcc-cCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCc--h-HHHHHHHHH
Q 024993 151 GPD--VDVLADYPVPSNK-VLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD--T-RWHSYFLKM 218 (259)
Q Consensus 151 ~~~--~~~~Hs~~~~~~~-~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~--~-~i~~nfl~~ 218 (259)
++. +..+||..+.... +..++++|+++++ ..++++++ .+++|+|||||.--+ . +|++||+++
T Consensus 121 p~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~------~~IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 121 PNPFTVTRYHSLVVDPETLPEELEVTAESEDG------GVIMAVRHKKLPIYGVQFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred CCCCEEEeeEEEEecCCCCCCceEEEEEeCCC------CEEEEEeeCCCCEEEEecCCccccccchHHHHHHHHhh
Confidence 775 4568999876531 2234788888653 47999984 479999999995433 3 899999976
No 24
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.94 E-value=6.1e-26 Score=201.80 Aligned_cols=194 Identities=24% Similarity=0.324 Sum_probs=154.1
Q ss_pred EEEEec-CCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcC-C-chhHHHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 3 i~vl~~-~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~G-G-~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
|-+|++ .||..++.++|+.+|+++..+..+.++.++|.+|+|| | +...++.|.. .++.+.|+++++.|+|++|||.
T Consensus 4 v~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~-~Gf~eplr~YiesgkPfmgicv 82 (541)
T KOG0623|consen 4 VTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNR-TGFAEPLRKYIESGKPFMGICV 82 (541)
T ss_pred EEEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhh-hhhHHHHHHHHhcCCCeEeehh
Confidence 567775 4899999999999999999999998999999999999 6 5666777755 6889999999999999999999
Q ss_pred hHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC-CEEEEE
Q 024993 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDVLA 158 (259)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-~~~~~H 158 (259)
|.|+|.....+ .+..++||++|+.+.+.+. ....+||+||+...+.+ ++.+|...|. .+||+|
T Consensus 83 GlQaLF~gSvE--~p~skGLgvipg~v~RFD~--------s~k~VPhIGWNsc~v~s------d~effg~~p~~~~YFVH 146 (541)
T KOG0623|consen 83 GLQALFDGSVE--NPPSKGLGVIPGIVGRFDA--------SAKIVPHIGWNSCQVGS------DSEFFGDVPNRHVYFVH 146 (541)
T ss_pred hHHHHhccccc--CCCcCcccccccceecccC--------CCCcCCcccccccccCC------cccccccCCCceEEEEe
Confidence 99999876543 3567899999999887421 22469999999876422 3334444443 689999
Q ss_pred eeecCCccc---CCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHH
Q 024993 159 DYPVPSNKV---LYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLK 217 (259)
Q Consensus 159 s~~~~~~~~---~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~ 217 (259)
||.....+. ...+.+|++.|+ ++.++.+++++|++++|||||.+.+. ..+++|++
T Consensus 147 Syl~~ek~~~len~~wkiat~kYG----~E~Fi~ai~knN~~AtQFHPEKSG~aGL~vl~~FL~ 206 (541)
T KOG0623|consen 147 SYLNREKPKSLENKDWKIATCKYG----SESFISAIRKNNVHATQFHPEKSGEAGLSVLRRFLH 206 (541)
T ss_pred eecccccccCCCCCCceEeeeccC----cHHHHHHHhcCceeeEecccccccchhHHHHHHHHh
Confidence 996532221 112788999987 35788999999999999999999875 78999997
No 25
>PRK00758 GMP synthase subunit A; Validated
Probab=99.94 E-value=5e-26 Score=191.65 Aligned_cols=171 Identities=21% Similarity=0.273 Sum_probs=119.0
Q ss_pred EEEEecCCChHH-HHHHHHhCCCeEEEeCCC---CCCCCc-CEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKP---DQLQNV-SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 3 i~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---~~l~~~-d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|+|+++.+.|.. +.++|+++|+++.+++.. +++.++ |+||++||+. ..+. ..+.++++ +.++|+|||
T Consensus 2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~--~~~~---~~~~~~l~---~~~~PilGI 73 (184)
T PRK00758 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD--IERA---GNCPEYLK---ELDVPILGI 73 (184)
T ss_pred EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC--hhhc---cccHHHHH---hCCCCEEEE
Confidence 899998888775 568899999999887743 356677 9999999973 2222 12334454 468999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--EE
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VD 155 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~--~~ 155 (259)
|+|||+|+.++++ ++.+. +.++.||..+..+ ..+++|.++++. ++
T Consensus 74 C~G~Q~L~~a~Gg--------------~v~~~-------------~~~~~g~~~i~~~------~~~~l~~~~~~~~~~~ 120 (184)
T PRK00758 74 CLGHQLIAKAFGG--------------EVGRG-------------EYGEYALVEVEIL------DEDDILKGLPPEIRVW 120 (184)
T ss_pred eHHHHHHHHhcCc--------------EEecC-------------CCceeeeEEEEEc------CCChhhhCCCCCcEEE
Confidence 9999999999852 44432 1224455444321 135667776554 55
Q ss_pred EEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch---HHHHHHHHHHHhc
Q 024993 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKMMSEV 222 (259)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~---~i~~nfl~~~~~~ 222 (259)
.+|++.+...+.. ..++|+++++ .+++++. .++||+|||||++.+. +|++||++.|.+|
T Consensus 121 ~~H~~~v~~l~~~-~~~la~~~~~-------~v~a~~~~~~~~~g~QfHPE~~~~~~g~~l~~~f~~~~~~~ 184 (184)
T PRK00758 121 ASHADEVKELPDG-FEILARSDIC-------EVEAMKHKEKPIYGVQFHPEVAHTEYGEEIFKNFLEICGKY 184 (184)
T ss_pred eehhhhhhhCCCC-CEEEEECCCC-------CEEEEEECCCCEEEEEcCCccCCCchHHHHHHHHHHHHccC
Confidence 6788876544433 2678887764 4677764 4599999999987642 8999999988775
No 26
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=4.5e-25 Score=186.98 Aligned_cols=174 Identities=19% Similarity=0.174 Sum_probs=118.8
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
+|+|+++.++|.. +.+.|+++|+++.++++.+ ++. ++|+||++||+.+..+. ......++. .++++|+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~----~~~~~~i~~-~~~~~Pi 75 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA----GISLAVIRH-FADKLPI 75 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC----CCchHHHHH-hcCCCCE
Confidence 1899999999996 6689999999999987642 232 58999999997654322 112455554 4679999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
||||+|+|+|+.++| +++.+.+ ....||..+.. ...+++|.+++.
T Consensus 76 LGIC~G~Qlla~~~G--------------G~v~~~~-------------~~~~G~~~~~~------~~~~~lf~~l~~~~ 122 (191)
T PRK06774 76 LGVCLGHQALGQAFG--------------ARVVRAR-------------QVMHGKTSAIC------HSGQGVFRGLNQPL 122 (191)
T ss_pred EEECHHHHHHHHHhC--------------CEEEeCC-------------cceecceEEEE------ecCchhhcCCCCCc
Confidence 999999999999996 3454421 12346654321 024567777644
Q ss_pred CEEEEEeeecC--CcccCCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHHH
Q 024993 153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 153 ~~~~~Hs~~~~--~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
.++++|++++. ..+.. ..++|++.+++ ....++++++. ++||+|||||...+. +|++||++
T Consensus 123 ~v~~~Hs~~v~~~~lp~~-~~vlA~s~~d~---~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 123 TVTRYHSLVIAADSLPGC-FELTAWSERGG---EMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred EEEEeCcceeeccCCCCC-eEEEEEeCCCC---CcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 57788999874 22222 36888877541 12345666654 899999999985443 89999985
No 27
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.93 E-value=2.4e-25 Score=188.12 Aligned_cols=170 Identities=19% Similarity=0.231 Sum_probs=118.7
Q ss_pred EEEEecCCChH-HHHHHHHhCCCeEEEeCCC---CCCCC--cCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 3 VGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQN--VSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 3 i~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~---~~l~~--~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
|+|+++...+. ++.++|++.|+++++++.. +++.+ +|+||++||..+.... ...++++.++++++|+||
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~-----~~~~~i~~~~~~~~PilG 75 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE-----NAPRADEKIFELGVPVLG 75 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC-----CchHHHHHHHhCCCCEEE
Confidence 57898865555 5779999999999887543 33444 4599999996543221 124667888889999999
Q ss_pred EchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--E
Q 024993 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V 154 (259)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~--~ 154 (259)
||+|||+|+.+++ +++.+. +.+++||..+... ..+++|.++++. +
T Consensus 76 IC~G~Qll~~~lg--------------g~v~~~-------------~~~~~g~~~v~~~------~~~~l~~~~~~~~~~ 122 (188)
T TIGR00888 76 ICYGMQLMAKQLG--------------GEVGRA-------------EKREYGKAELEIL------DEDDLFRGLPDESTV 122 (188)
T ss_pred ECHHHHHHHHhcC--------------ceEecC-------------CCccceeEEEEEe------cCCHhhcCCCCCcEE
Confidence 9999999999985 244432 1235677665431 245777776544 5
Q ss_pred EEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHHHH
Q 024993 155 DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLKM 218 (259)
Q Consensus 155 ~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl~~ 218 (259)
+.+|++.+...+.. ..++|+++++ .+++++.+ ++||+|||||++.+. +|++||++.
T Consensus 123 ~~~H~~~v~~l~~~-~~vla~~~~~-------~v~a~~~~~~~~~g~QfHPE~~~~~~g~~i~~~f~~~ 183 (188)
T TIGR00888 123 WMSHGDKVKELPEG-FKVLATSDNC-------PVAAMAHEEKPIYGVQFHPEVTHTEYGNELLENFVYD 183 (188)
T ss_pred EeEccceeecCCCC-CEEEEECCCC-------CeEEEEECCCCEEEEeeCCccCCChhhHHHHHHHHHH
Confidence 56799887544433 2677876643 56777633 899999999998752 899999983
No 28
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.93 E-value=3.7e-25 Score=185.47 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=115.8
Q ss_pred EEEEecCCChH-HHHHHHHhCCCeEEEeCCCC-----CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 3 VGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 3 i~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-----~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
|+|+++..++. ++.++|++.|+++++++... ++.++|+||+|||.....+.. .....+...+.++|+||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~-----~~~~~~~~~~~~~PilG 75 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED-----APRVDPEIFELGVPVLG 75 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc-----cchhhHHHHhcCCCEEE
Confidence 57898865555 56789999999999887542 467899999999865332210 01223344456999999
Q ss_pred EchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--E
Q 024993 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V 154 (259)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~--~ 154 (259)
||+|||+|+.+++ +++.+. ..++.||+.+... ..+++|.+++.. +
T Consensus 76 IC~G~Qll~~~~g--------------g~v~~~-------------~~~~~G~~~v~~~------~~~~l~~~~~~~~~~ 122 (181)
T cd01742 76 ICYGMQLIAKALG--------------GKVERG-------------DKREYGKAEIEID------DSSPLFEGLPDEQTV 122 (181)
T ss_pred EcHHHHHHHHhcC--------------CeEEeC-------------CCCcceEEEEEec------CCChhhcCCCCceEE
Confidence 9999999999985 244432 1235677765321 246788777654 4
Q ss_pred EEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch---HHHHHHH
Q 024993 155 DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFL 216 (259)
Q Consensus 155 ~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~---~i~~nfl 216 (259)
+.+|++.+...+... .++|+++++ .+++++. .++||+|||||++.+. ++++||+
T Consensus 123 ~~~H~~~v~~l~~~~-~~la~~~~~-------~i~a~~~~~~~~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 123 WMSHGDEVVKLPEGF-KVIASSDNC-------PVAAIANEEKKIYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred EcchhhhhhhcCCCc-EEEEeCCCC-------CEEEEEeCCCcEEEEEcCCccccCcChHHHHHhhC
Confidence 567888775444332 678887653 4677764 3899999999998752 8999984
No 29
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.92 E-value=2.2e-24 Score=183.53 Aligned_cols=171 Identities=19% Similarity=0.173 Sum_probs=117.6
Q ss_pred EEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 3 i~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|+|++++++|.. +.++|+++|.++.+++..+ ++ .++|+||++||+.+..+. ......++.+ +.++|+|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~----~~~~~~i~~~-~~~~PvL 76 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA----GISMEVIRYF-AGKIPIF 76 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC----CCchHHHHHh-cCCCCEE
Confidence 899999999996 6689999999999987652 11 368999999997544321 1234555543 5789999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccC-CCCccceeeeecCcccccCCCC-
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-GGPETFRGVFIRAPAVLDVGPD- 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~pl~~~~~~~- 153 (259)
|||+|+|+|+.++| +++.+.+ ..+.|+.. +.. ...++|.++++.
T Consensus 77 GIClG~Qlla~~lG--------------g~V~~~~-------------~~~~G~~~~i~~-------~~~~lf~~~~~~~ 122 (195)
T PRK07649 77 GVCLGHQSIAQVFG--------------GEVVRAE-------------RLMHGKTSLMHH-------DGKTIFSDIPNPF 122 (195)
T ss_pred EEcHHHHHHHHHcC--------------CEEeeCC-------------CcccCCeEEEEE-------CCChhhcCCCCCC
Confidence 99999999999996 3554421 11223322 110 245788888664
Q ss_pred -EEEEEeeecC--CcccCCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHHHHHH
Q 024993 154 -VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLKMMS 220 (259)
Q Consensus 154 -~~~~Hs~~~~--~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl~~~~ 220 (259)
++.+|++.+. ..+.+ ..++|+++++ .++++++. ++||+|||||...+. .+++||++.+.
T Consensus 123 ~v~~~H~~~v~~~~lp~~-~~~~a~s~~~-------~v~a~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl~~~~ 189 (195)
T PRK07649 123 TATRYHSLIVKKETLPDC-LEVTSWTEEG-------EIMAIRHKTLPIEGVQFHPESIMTSHGKELLQNFIRKYS 189 (195)
T ss_pred EEEEechheEecccCCCC-eEEEEEcCCC-------cEEEEEECCCCEEEEEECCCCCCCccHHHHHHHHHHHhH
Confidence 5667888763 22332 3678887654 46788754 599999999965432 89999998654
No 30
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=2e-24 Score=182.60 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=114.9
Q ss_pred EEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 3 i~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|+|+++.++|.. +.+.|+++|+++.++++.+ ++ .++|+||++||+.+..+. ....+.++. +++++|+|
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~----~~~~~~~~~-~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEA----GISLDVIRH-YAGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHC----CccHHHHHH-hcCCCCEE
Confidence 899999999996 6689999999999987653 22 268999999987554321 112455555 46789999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCccccc-CCCCccceeeeecCcccccCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-EGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
|||+|+|+|+.++|+ ++.+.+ .++.|+. .+. ....++|.+++.
T Consensus 77 GIClG~Q~la~a~Gg--------------~v~~~~-------------~~~~g~~~~v~-------~~~~~l~~~~~~~~ 122 (187)
T PRK08007 77 GVCLGHQAMAQAFGG--------------KVVRAA-------------KVMHGKTSPIT-------HNGEGVFRGLANPL 122 (187)
T ss_pred EECHHHHHHHHHcCC--------------EEEeCC-------------CcccCCceEEE-------ECCCCcccCCCCCc
Confidence 999999999999963 554421 1122321 111 023457766654
Q ss_pred CEEEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHHH
Q 024993 153 DVDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 153 ~~~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
.+..+|++.++. .+.. ..++|+++++ .+++++ ..++||+|||||...+. .|++||++
T Consensus 123 ~v~~~H~~~v~~~~lp~~-~~v~a~~~~~-------~i~a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 123 TVTRYHSLVVEPDSLPAC-FEVTAWSETR-------EIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred EEEEcchhEEccCCCCCC-eEEEEEeCCC-------cEEEEEeCCCCEEEEEeCCcccCCcchHHHHHHHhh
Confidence 456789988742 2222 3678887654 577776 45799999999974432 89999985
No 31
>CHL00101 trpG anthranilate synthase component 2
Probab=99.92 E-value=2.4e-24 Score=182.58 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=116.4
Q ss_pred EEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 3 i~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|+|+++.++|.. +.++|+++|+++.+++..+ ++ .++|+||++||+....+ ......+.+++++++|+|
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~-----~~~~~~i~~~~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRD-----SGISLDVISSYAPYIPIL 76 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHH-----CcchHHHHHHhcCCCcEE
Confidence 899999999996 5689999999999876432 22 46899999998754322 112334445667899999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (259)
|||+|+|+|+.++| +++.+.+ .++.|+..... . ..+++|.++++.
T Consensus 77 GIClG~Qlla~~~G--------------g~V~~~~-------------~~~~g~~~~~~---~---~~~~l~~~~~~~~~ 123 (190)
T CHL00101 77 GVCLGHQSIGYLFG--------------GKIIKAP-------------KPMHGKTSKIY---H---NHDDLFQGLPNPFT 123 (190)
T ss_pred EEchhHHHHHHHhC--------------CEEEECC-------------CcccCceeeEe---e---CCcHhhccCCCceE
Confidence 99999999999996 3555421 11233332111 0 245678777654
Q ss_pred EEEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEE--eCC-EEEEEECccCCCch---HHHHHHHHH
Q 024993 154 VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVR--QGN-LLGTAFHPELTADT---RWHSYFLKM 218 (259)
Q Consensus 154 ~~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~-v~gvQfHPE~~~~~---~i~~nfl~~ 218 (259)
++.+|++.+.. .+.+ +.++|+++++ .+++++ ..+ +||+|||||...+. +|++||++.
T Consensus 124 v~~~H~~~v~~~~lp~~-~~vla~s~~~-------~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 124 ATRYHSLIIDPLNLPSP-LEITAWTEDG-------LIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred EEcchhheeecccCCCc-eEEEEEcCCC-------cEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence 45678888742 2222 3678887664 466766 346 99999999986433 899999874
No 32
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.92 E-value=3.4e-24 Score=181.33 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=115.6
Q ss_pred EEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 3 i~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|+||++.++|.. +.++|+++|+++++++... ++ .++|+||++||+.+..+. ....+++++ +..++|+|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~----~~~~~~l~~-~~~~~PvL 76 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEA----GISLELIRE-FAGKVPIL 76 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHc----chHHHHHHH-hcCCCCEE
Confidence 899999999985 6799999999999886532 12 248999999886443221 123355654 45789999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (259)
|||+|||+|+.++|+ ++.+.+ .++.|+... .+ -..+++|.++++.
T Consensus 77 GIClG~Qlla~alGg--------------~v~~~~-------------~~~~g~~~~----v~--~~~~~l~~~~~~~~~ 123 (189)
T PRK05670 77 GVCLGHQAIGEAFGG--------------KVVRAK-------------EIMHGKTSP----IE--HDGSGIFAGLPNPFT 123 (189)
T ss_pred EECHHHHHHHHHhCC--------------EEEecC-------------CcccCceeE----EE--eCCCchhccCCCCcE
Confidence 999999999999963 444321 112233211 00 0245677666553
Q ss_pred EEEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch---HHHHHHHHHHH
Q 024993 154 VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKMMS 220 (259)
Q Consensus 154 ~~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~---~i~~nfl~~~~ 220 (259)
++.+|++.+.. .+.. ..++|+++++ .+++++. .++||+|||||..... .|+++|+++++
T Consensus 124 v~~~H~~~v~~~~lp~~-~~~la~s~~~-------~i~a~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~~~~~ 189 (189)
T PRK05670 124 VTRYHSLVVDRESLPDC-LEVTAWTDDG-------EIMGVRHKELPIYGVQFHPESILTEHGHKLLENFLELAR 189 (189)
T ss_pred EEcchhheeccccCCCc-eEEEEEeCCC-------cEEEEEECCCCEEEEeeCCCcCCCcchHHHHHHHHHhhC
Confidence 45678888742 2333 3678887543 5788874 4799999999986332 89999998763
No 33
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.92 E-value=7.8e-25 Score=186.27 Aligned_cols=177 Identities=20% Similarity=0.167 Sum_probs=122.6
Q ss_pred CEEEEEecCCChHHHH-HHHHhCC-CeEEEeCCC---CCC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFNEHI-AALKRLG-VKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~~~~-~~L~~~G-~~v~~~~~~---~~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
+||+|+++.+.|..++ +++++.| ...+++... +.+ .++|+||++||+.+..+.-.+.....++|++....++|
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~p 81 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKP 81 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCC
Confidence 4799999999998755 8899999 555554322 223 35699999999754422210113456788887767788
Q ss_pred EEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC
Q 024993 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~ 153 (259)
+||||+|||+|+.++| ++|.+++ ..++||..++... .++++|.+++..
T Consensus 82 vLGIC~G~Ql~A~~lG--------------g~V~~~~-------------~~E~G~~~v~~~~-----~~~~l~~gl~~~ 129 (198)
T COG0518 82 VLGICLGHQLLAKALG--------------GKVERGP-------------KREIGWTPVELTE-----GDDPLFAGLPDL 129 (198)
T ss_pred EEEEChhHHHHHHHhC--------------CEEeccC-------------CCccceEEEEEec-----CccccccCCccc
Confidence 9999999999999996 3555431 1456777665421 123678776432
Q ss_pred ---EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe-CCEEEEEECccCCCch--HHHHHHHH
Q 024993 154 ---VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTADT--RWHSYFLK 217 (259)
Q Consensus 154 ---~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~-~~v~gvQfHPE~~~~~--~i~~nfl~ 217 (259)
++..|.+.+...+.++ .++|+|+.+ ..+++++ +++||+|||||+++.. +|++||..
T Consensus 130 ~~~v~~sH~D~v~~lP~g~-~vlA~s~~c-------p~qa~~~~~~~~gvQFHpEv~~~~~~~~l~nf~~ 191 (198)
T COG0518 130 FTTVFMSHGDTVVELPEGA-VVLASSETC-------PNQAFRYGKRAYGVQFHPEVTHEYGEALLENFAH 191 (198)
T ss_pred cCccccchhCccccCCCCC-EEEecCCCC-------hhhheecCCcEEEEeeeeEEeHHHHHHHHHHhhh
Confidence 5667777776555554 789998764 3566664 5899999999999854 79999985
No 34
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.92 E-value=2.8e-24 Score=188.24 Aligned_cols=172 Identities=19% Similarity=0.103 Sum_probs=118.4
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCCCeEEEeCC------CCCCCCcCEEEEcCCchhH---HHHHHhhCCHHHHHHHHHH
Q 024993 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT---MARLAEYHNLFPALREFVK 69 (259)
Q Consensus 1 mki~vl~~~G--~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~iil~GG~~~~---~~~l~~~~~~~~~i~~~~~ 69 (259)
|||+||+..+ ....+.++|++.|.++.++++ +++++++|++|++||+.+. ..++. .+.++|+++++
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~---~~~~~i~~~~~ 84 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIR---REIDWISVPLK 84 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHH---HHHHHHHHHHH
Confidence 8899997543 455677899999999988753 2356789999999986432 23443 24688999999
Q ss_pred cCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCccccc
Q 024993 70 MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD 149 (259)
Q Consensus 70 ~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~ 149 (259)
+++|+||||+|+|+|+.++|+ +|.+++. ..+++||..++.+. ..+++..
T Consensus 85 ~~~PvLGIC~G~Qlla~alGG--------------~V~~~~~-----------G~~e~G~~~i~~~~------~~~~~~~ 133 (239)
T PRK06490 85 ENKPFLGICLGAQMLARHLGA--------------RVAPHPD-----------GRVEIGYYPLRPTE------AGRALMH 133 (239)
T ss_pred CCCCEEEECHhHHHHHHHcCC--------------EeecCCC-----------CCCccceEEeEECC------CcccccC
Confidence 999999999999999999963 5544311 11255666554321 2334444
Q ss_pred CCCCEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe-CCEEEEEECccCCCchHHHHHHHH
Q 024993 150 VGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTADTRWHSYFLK 217 (259)
Q Consensus 150 ~~~~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~-~~v~gvQfHPE~~~~~~i~~nfl~ 217 (259)
.+..++.+|++....+ .+ ..++|+++.+ .+++++. +++||+|||||++. +++++|+.
T Consensus 134 ~~~~~~~~H~d~~~lP-~~-~~~LA~s~~~-------~~qa~~~~~~v~g~QfHPE~~~--~~~~~~i~ 191 (239)
T PRK06490 134 WPEMVYHWHREGFDLP-AG-AELLATGDDF-------PNQAFRYGDNAWGLQFHPEVTR--AMMHRWVV 191 (239)
T ss_pred CCCEEEEECCccccCC-CC-CEEEEeCCCC-------CeEEEEeCCCEEEEeeCccCCH--HHHHHHHH
Confidence 4555677788764333 32 3788887764 4567764 48999999999985 66777764
No 35
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=1e-23 Score=181.80 Aligned_cols=178 Identities=19% Similarity=0.200 Sum_probs=120.7
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----C----CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----Q----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~----l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
|+|.|+++.+.+.. +.++|+++|+++++++... + +.++|+||++||+.+..+ . ....++++++++++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~-~---~~~~~~i~~~~~~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPER-A---GASIDMVRACAAAG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhh-c---chHHHHHHHHHhCC
Confidence 89999999888775 4578999999998876431 1 347999999998754321 1 12357888988899
Q ss_pred CcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCC
Q 024993 72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (259)
Q Consensus 72 ~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~ 151 (259)
+|+||||+|+|+|+.++|+ ++.+.+ .++.|+... ......++|.+++
T Consensus 77 ~PiLGIC~G~Qlla~a~GG--------------~v~~~~-------------~~~~g~~~~------v~~~~~~~~~~~~ 123 (214)
T PRK07765 77 TPLLGVCLGHQAIGVAFGA--------------TVDRAP-------------ELLHGKTSS------VHHTGVGVLAGLP 123 (214)
T ss_pred CCEEEEccCHHHHHHHhCC--------------EEeeCC-------------CCccCceeE------EEECCCccccCCC
Confidence 9999999999999999963 444321 111222110 0001334566655
Q ss_pred CC--EEEEEeeecC--CcccCCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCc---hHHHHHHHHHHHhc
Q 024993 152 PD--VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTAD---TRWHSYFLKMMSEV 222 (259)
Q Consensus 152 ~~--~~~~Hs~~~~--~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~---~~i~~nfl~~~~~~ 222 (259)
.. ++.+|++.+. ..+.+ ..++|++.++ .+++++.+ ++||+|||||...+ .++++||+..|.-.
T Consensus 124 ~~~~v~~~H~~~v~~~~lp~~-~~vla~s~~~-------~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~~~~~~ 195 (214)
T PRK07765 124 DPFTATRYHSLTILPETLPAE-LEVTARTDSG-------VIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLTVCGWA 195 (214)
T ss_pred CccEEEecchheEecccCCCc-eEEEEEcCCC-------cEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHHHhccc
Confidence 43 5567999874 22323 2678887664 57888754 69999999996532 28999999888543
Q ss_pred C
Q 024993 223 G 223 (259)
Q Consensus 223 ~ 223 (259)
+
T Consensus 196 ~ 196 (214)
T PRK07765 196 P 196 (214)
T ss_pred c
Confidence 3
No 36
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.92 E-value=7.1e-24 Score=178.48 Aligned_cols=168 Identities=21% Similarity=0.279 Sum_probs=114.3
Q ss_pred EEEEecCCChHHH-HHHHHhCCCeEEEeCCCC------CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 3 VGVLALQGSFNEH-IAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 3 i~vl~~~G~~~~~-~~~L~~~G~~v~~~~~~~------~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|+|+++.++|.+. .++|+++|+++++++... ++.++|+||++||.....+. .....+++++++++|+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~-----~~~~~i~~~~~~~~Pvl 75 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDA-----GISLEIIRALAGKVPIL 75 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccc-----hhHHHHHHHHhcCCCEE
Confidence 5789999999965 589999999999986532 35689999998876443221 12345556667899999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccc-cCCCCccceeeeecCcccccCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
|||+|+|+|+.++|+ ++.+.+ ....+| ..+.. .++++|.++++
T Consensus 76 GIC~G~Qlla~~~Gg--------------~v~~~~-------------~~~~g~~~~v~~-------~~~~~~~~~~~~~ 121 (184)
T cd01743 76 GVCLGHQAIAEAFGG--------------KVVRAP-------------EPMHGKTSEIHH-------DGSGLFKGLPQPF 121 (184)
T ss_pred EECHhHHHHHHHhCC--------------EEEeCC-------------CCCcCceeEEEE-------CCCccccCCCCCc
Confidence 999999999999963 444321 112222 22211 24567777754
Q ss_pred CEEEEEeeecCCcccC-CCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHH
Q 024993 153 DVDVLADYPVPSNKVL-YSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFL 216 (259)
Q Consensus 153 ~~~~~Hs~~~~~~~~~-~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl 216 (259)
.++..|++++...+.. ...++|+++++ .+++++.+ ++||+|||||+...+ +|++||+
T Consensus 122 ~~~~~H~~~v~~~~~~~~~~~la~~~~~-------~v~a~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 122 TVGRYHSLVVDPDPLPDLLEVTASTEDG-------VIMALRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEEeCcEEEEecCCCCceEEEEEeCCCC-------eEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 3566799987654432 12567776553 68888754 599999999985543 8999984
No 37
>PLN02347 GMP synthetase
Probab=99.92 E-value=4.2e-24 Score=205.67 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=120.9
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCC---CCCC--CcCEEEEcCCchhHHHHHHhhCCHH-HHHHHHHHcCCcE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLF-PALREFVKMGKPV 74 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---~~l~--~~d~iil~GG~~~~~~~l~~~~~~~-~~i~~~~~~g~Pi 74 (259)
||+||++.+.|.. +.++|+++|+.+++++.. +++. ++|+||+|||+.+..+. ....+. ..++.+.+.++|+
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~--~~p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVE--GAPTVPEGFFDYCRERGVPV 89 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCccccc--CCchhhHHHHHHHHhcCCcE
Confidence 6999999888874 568999999999887543 3333 68999999996543211 001112 2333334579999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
||||+|||+|+.++| +++.+. ..+++||+.+... .++++|.++++
T Consensus 90 LGIClG~QlLa~alG--------------G~V~~~-------------~~~e~G~~~v~i~------~~~~Lf~~l~~~~ 136 (536)
T PLN02347 90 LGICYGMQLIVQKLG--------------GEVKPG-------------EKQEYGRMEIRVV------CGSQLFGDLPSGE 136 (536)
T ss_pred EEECHHHHHHHHHcC--------------CEEEec-------------CCcccceEEEEEc------CCChhhhcCCCCc
Confidence 999999999999996 355442 1234677765421 25678887754
Q ss_pred --CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHHH
Q 024993 153 --DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 153 --~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
.++++|++.+...+.+. .++|+++++ .+++++ ..++||+|||||+++++ +|++||+.
T Consensus 137 ~~~v~~~Hsd~V~~lP~g~-~vlA~s~~~-------~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~ 200 (536)
T PLN02347 137 TQTVWMSHGDEAVKLPEGF-EVVAKSVQG-------AVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLF 200 (536)
T ss_pred eEEEEEEEEEEeeeCCCCC-EEEEEeCCC-------cEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHH
Confidence 46778998875544443 688888765 367776 56899999999998754 89999984
No 38
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.92 E-value=8.5e-24 Score=178.91 Aligned_cols=170 Identities=22% Similarity=0.198 Sum_probs=114.2
Q ss_pred EEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 3 i~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|+|+++.++|.. +.+.|+++|+++.++++.+ ++. ++|+||++||+.+..+. . ...+.++++ ++++|+|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~-~---~~~~~i~~~-~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEA-G---ISLEAIRHF-AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---hhHHHHHHh-ccCCCEE
Confidence 899999999995 6789999999998877432 232 58999999987543221 1 124667766 6799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--C
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~ 153 (259)
|||+|||+|+.++|+ ++.+.+ +..+-+|..+.. ...+++.++++ .
T Consensus 77 GIC~G~Qll~~~~GG--------------~v~~~~------------~~~~g~~~~v~~-------~~~~~~~~l~~~~~ 123 (188)
T TIGR00566 77 GVCLGHQAMGQAFGG--------------DVVRAN------------TVMHGKTSEIEH-------NGAGIFRGLFNPLT 123 (188)
T ss_pred EECHHHHHHHHHcCC--------------EEeeCC------------CccccceEEEEE-------CCCccccCCCCCcE
Confidence 999999999999963 444321 112222333211 13345556543 4
Q ss_pred EEEEEeeecC--CcccCCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHHH
Q 024993 154 VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 154 ~~~~Hs~~~~--~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
++.+|++.+. ..+.. ..++|+++++ ..+++++.. ++||+|||||...+. .|++||++
T Consensus 124 v~~~H~~~v~~~~l~~~-~~v~a~s~~~------~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 124 ATRYHSLVVEPETLPTC-FPVTAWEEEN------IEIMAIRHRDLPLEGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred EEEcccceEecccCCCc-eEEEEEcCCC------CEEEEEEeCCCCEEEEEeCCCccCCcccHHHHHHHHh
Confidence 5668998874 22222 3677876542 367788643 799999999975443 89999985
No 39
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.91 E-value=1.7e-23 Score=179.69 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=111.7
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCC---CCC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---~~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
||+|+++.++|.. +.++|+++|+++++++.. +++ .++|+||++||+.+..+.- ...+.++.+. .++|+|
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~----~~~~li~~~~-~~~PiL 77 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAG----NMMALIDRTL-GQIPLL 77 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhh----HHHHHHHHHh-CCCCEE
Confidence 4999999888885 679999999999998763 223 3689999988875543221 1234555443 579999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCC----
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG---- 151 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~---- 151 (259)
|||+|+|+|+.++|+.-......-|. ... +.....+. .+|+|.+++
T Consensus 78 GIClG~Qlla~alGG~V~~~~~~~G~----~~~-------------i~~~~~~~-------------~~~l~~~~~~~~~ 127 (208)
T PRK05637 78 GICLGFQALLEHHGGKVEPCGPVHGT----TDN-------------MILTDAGV-------------QSPVFAGLATDVE 127 (208)
T ss_pred EEcHHHHHHHHHcCCeeccCCcccce----EEE-------------eEECCCCC-------------CCcccCCCCcccc
Confidence 99999999999996421000000000 000 00000010 122332221
Q ss_pred ----------CCEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHH
Q 024993 152 ----------PDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFL 216 (259)
Q Consensus 152 ----------~~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl 216 (259)
..++.+|++.+...+... .++|+++.+ ...++++++ ..++||+|||||...++ .|++||+
T Consensus 128 ~~~~~~~g~~~~V~~~H~~~v~~lp~~~-~vlA~s~~~----~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl 202 (208)
T PRK05637 128 PDHPEIPGRKVPIARYHSLGCVVAPDGM-ESLGTCSSE----IGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCV 202 (208)
T ss_pred cccccccCCceEEEEechhhhhcCCCCe-EEEEEecCC----CCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHH
Confidence 236678888775544443 788887542 124567755 56899999999987764 8999999
Q ss_pred HHH
Q 024993 217 KMM 219 (259)
Q Consensus 217 ~~~ 219 (259)
+..
T Consensus 203 ~~~ 205 (208)
T PRK05637 203 EQL 205 (208)
T ss_pred HHH
Confidence 754
No 40
>PLN02335 anthranilate synthase
Probab=99.91 E-value=2.8e-23 Score=180.11 Aligned_cols=185 Identities=19% Similarity=0.209 Sum_probs=120.5
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC-C---C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-Q---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~-~---l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
+||+||++.++|.. +.++|+++|+++++++... + + .++|+||++||+.+..+. ....+.+++ ...++|
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~----~~~~~~~~~-~~~~~P 93 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDS----GISLQTVLE-LGPLVP 93 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc----cchHHHHHH-hCCCCC
Confidence 47999999999995 5689999999999987532 1 2 258999999987544221 112344443 346799
Q ss_pred EEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC-
Q 024993 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP- 152 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~- 152 (259)
+||||+|+|+|+.++|+ ++.+.+.+ ..+-+|..+.... . .++++|.+++.
T Consensus 94 iLGIClG~QlLa~alGg--------------~v~~~~~~-----------~~~G~~~~v~~~~-~---~~~~Lf~~l~~~ 144 (222)
T PLN02335 94 LFGVCMGLQCIGEAFGG--------------KIVRSPFG-----------VMHGKSSPVHYDE-K---GEEGLFSGLPNP 144 (222)
T ss_pred EEEecHHHHHHHHHhCC--------------EEEeCCCc-----------cccCceeeeEECC-C---CCChhhhCCCCC
Confidence 99999999999999963 44332110 1111232221110 0 13478888765
Q ss_pred -CEEEEEeeecCCc--ccCCCcceeeeecccCCCCCceEEEEEeC---CEEEEEECccCCCch---HHHHHHHHHHHhcC
Q 024993 153 -DVDVLADYPVPSN--KVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPELTADT---RWHSYFLKMMSEVG 223 (259)
Q Consensus 153 -~~~~~Hs~~~~~~--~~~~~~~lA~s~~~~~~~~~~~~~~~~~~---~v~gvQfHPE~~~~~---~i~~nfl~~~~~~~ 223 (259)
.++.+|++++... +.....++|+++++ .+++++.. ++||+|||||..... .|++||++.+++++
T Consensus 145 ~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~-------~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~~~~ 217 (222)
T PLN02335 145 FTAGRYHSLVIEKDTFPSDELEVTAWTEDG-------LIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIEKKE 217 (222)
T ss_pred CEEEechhheEecccCCCCceEEEEEcCCC-------CEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHHhhc
Confidence 3566788877532 22213667776543 57777744 499999999977543 89999999887665
Q ss_pred CCc
Q 024993 224 EGT 226 (259)
Q Consensus 224 ~~~ 226 (259)
..+
T Consensus 218 ~~~ 220 (222)
T PLN02335 218 SEK 220 (222)
T ss_pred ccc
Confidence 443
No 41
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.91 E-value=4.4e-23 Score=175.15 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=115.6
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC-CC-----CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-QL-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~-~l-----~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
+|+|+++.++|.. +.++|+++|+++.+++..+ ++ .++|++|++||+.+..+. ....+.++. +++++|+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~----~~~~~~i~~-~~~~~Pi 75 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEA----GISLQAIEH-FAGKLPI 75 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHC----cchHHHHHH-hcCCCCE
Confidence 1899999999995 6799999999999887541 21 258999999987544221 112455654 5689999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
||||+|+|+|+.++|+ ++.+.+ .++.||... .. ...+++|.++++
T Consensus 76 LGIClG~Qlia~a~Gg--------------~v~~~~-------------~~~~G~~~~----~~--~~~~~l~~~~~~~~ 122 (193)
T PRK08857 76 LGVCLGHQAIAQVFGG--------------QVVRAR-------------QVMHGKTSP----IR--HTGRSVFKGLNNPL 122 (193)
T ss_pred EEEcHHHHHHHHHhCC--------------EEEeCC-------------CceeCceEE----EE--ECCCcccccCCCcc
Confidence 9999999999999963 444321 112344210 00 013457776654
Q ss_pred CEEEEEeeecC--CcccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch---HHHHHHHHH
Q 024993 153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKM 218 (259)
Q Consensus 153 ~~~~~Hs~~~~--~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~---~i~~nfl~~ 218 (259)
.+..+|++.+. ..+.. .+++|++.+.. .....++++++ .++||+|||||...+. .|++||+++
T Consensus 123 ~v~~~H~~~v~~~~lp~~-~~v~a~s~~~~--~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 123 TVTRYHSLVVKNDTLPEC-FELTAWTELED--GSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred EEEEccEEEEEcCCCCCC-eEEEEEecCcC--CCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 45667888764 22222 36788775310 01245777764 4899999999977433 899999864
No 42
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.90 E-value=1.1e-23 Score=184.24 Aligned_cols=178 Identities=20% Similarity=0.175 Sum_probs=114.5
Q ss_pred CE-EEEEec----------CCChHHHH-HHHHhCCCeEEEeCCC-----CCCCCcCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 1 MV-VGVLAL----------QGSFNEHI-AALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 1 mk-i~vl~~----------~G~~~~~~-~~L~~~G~~v~~~~~~-----~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
|| |+||.. .|+|.++. +.|...|+++.+++.. .++.++|+||++||+.+..+...+...+.++
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~ 80 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSERTADW 80 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHHHHHHH
Confidence 66 999963 24555554 3456678888876532 2456899999999865432221111235788
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeec
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIR 143 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (259)
|+++++.++|+||||+|+|+|+.++|+ ++.+++. ..+.||..++.+. .+ ..
T Consensus 81 i~~~~~~~~PvlGIC~G~Qlla~alGg--------------~V~~~~~------------g~e~G~~~v~~~~-~~--~~ 131 (237)
T PRK09065 81 LRQAAAAGMPLLGICYGHQLLAHALGG--------------EVGYNPA------------GRESGTVTVELHP-AA--AD 131 (237)
T ss_pred HHHHHHCCCCEEEEChhHHHHHHHcCC--------------ccccCCC------------CCccceEEEEEcc-cc--cc
Confidence 999999999999999999999999963 3333211 1233444433211 00 13
Q ss_pred CcccccCCCC--EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe-CCEEEEEECccCCCchHHHHHHHH
Q 024993 144 APAVLDVGPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTADTRWHSYFLK 217 (259)
Q Consensus 144 ~pl~~~~~~~--~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~-~~v~gvQfHPE~~~~~~i~~nfl~ 217 (259)
+|+|.++++. ++.+|++.+...+.+. .++|+++++ .+++++. +++||+|||||++. .++++|+.
T Consensus 132 ~~l~~~~~~~~~v~~~H~d~v~~lp~~~-~~la~s~~~-------~iqa~~~~~~i~gvQfHPE~~~--~~~~~~~~ 198 (237)
T PRK09065 132 DPLFAGLPAQFPAHLTHLQSVLRLPPGA-VVLARSAQD-------PHQAFRYGPHAWGVQFHPEFTA--HIMRAYLR 198 (237)
T ss_pred ChhhhcCCccCcEeeehhhhhhhCCCCC-EEEEcCCCC-------CeeEEEeCCCEEEEEeCCcCCH--HHHHHHHH
Confidence 5678777654 4567887765444432 788887764 3677765 47999999999976 45555554
No 43
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.90 E-value=1.7e-23 Score=176.68 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=118.1
Q ss_pred EEEecCCChH-HHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 4 GVLALQGSFN-EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 4 ~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
+|+++++++. ++.++|+++|+++++++... ++.++|+||++||+.+..+ +. ...+.++++.+.++|+|
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~---~~~~~i~~~~~~~~Pil 76 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IE---GLIELIREARERKIPIL 76 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HH---HHHHHHHHHHHTTSEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-cc---ccccccccccccceEEE
Confidence 5788877766 56799999999998886432 2678999999998754432 21 23577888888899999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (259)
|||+|||+|+.++|+ ++.+.+ +.++.||+..... . ..+++|.+.++.
T Consensus 77 GIC~G~Q~la~~~G~--------------~v~~~~------------~~~~~g~~~~~~~--~---~~~~~~~~~~~~~~ 125 (192)
T PF00117_consen 77 GICLGHQILAHALGG--------------KVVPSP------------EKPHHGGNIPISE--T---PEDPLFYGLPESFK 125 (192)
T ss_dssp EETHHHHHHHHHTTH--------------EEEEEE------------SEEEEEEEEEEEE--E---EEHGGGTTSTSEEE
T ss_pred EEeehhhhhHHhcCC--------------cccccc------------ccccccccccccc--c---cccccccccccccc
Confidence 999999999999963 443321 1234454432100 0 123777777654
Q ss_pred EEEEEeeecCC---cccCCCcceeeeecccCCCCCceEEEEEeC-CEEEEEECccCCCch---HHHHHHHHH
Q 024993 154 VDVLADYPVPS---NKVLYSSSTVEIQEENAMPEKKVIVAVRQG-NLLGTAFHPELTADT---RWHSYFLKM 218 (259)
Q Consensus 154 ~~~~Hs~~~~~---~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~-~v~gvQfHPE~~~~~---~i~~nfl~~ 218 (259)
++.+|++.+.. .+... .++|++.++ +..++....+ ++||+|||||++.+. .+++||+.+
T Consensus 126 ~~~~H~~~v~~~~~~p~~~-~~la~s~~~-----~~~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 126 AYQYHSDAVNPDDLLPEGF-EVLASSSDG-----CPIQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp EEEEECEEEEEGHHHHTTE-EEEEEETTT-----TEEEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred cccccceeeeccccccccc-ccccccccc-----cccccccccccEEEEEecCCcCCCCCCcchhhhheeEe
Confidence 55679988775 34332 678887542 1233334444 499999999998765 799999754
No 44
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.89 E-value=5.3e-23 Score=197.85 Aligned_cols=170 Identities=21% Similarity=0.320 Sum_probs=119.1
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCC---CCCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---~~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
+|+||++.++|.. +.++|+++|+.+++++.. +++. ++|+||+|||+.+.++.-. .. ..+..++.++|+|
T Consensus 5 ~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~--p~---~~~~i~~~~~PvL 79 (511)
T PRK00074 5 KILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGA--PR---ADPEIFELGVPVL 79 (511)
T ss_pred EEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCC--cc---ccHHHHhCCCCEE
Confidence 5999999888885 558999999988887432 3444 3599999999764432110 11 2234456799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--C
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~ 153 (259)
|||+|||+|+.++|+ ++.+. ..++.||..++.. .++++|.+++. .
T Consensus 80 GIC~G~QlLa~~lGG--------------~V~~~-------------~~~e~G~~~i~i~------~~~~Lf~~l~~~~~ 126 (511)
T PRK00074 80 GICYGMQLMAHQLGG--------------KVERA-------------GKREYGRAELEVD------NDSPLFKGLPEEQD 126 (511)
T ss_pred EECHHHHHHHHHhCC--------------eEEec-------------CCcccceEEEEEc------CCChhhhcCCCceE
Confidence 999999999999963 44432 1234566655421 24578877754 4
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHHH
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
+++.|++.+...+.+. .++|+++++ .+++++ .+++||+|||||++.++ .|++||+.
T Consensus 127 v~~~H~d~V~~lp~g~-~vlA~s~~~-------~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~ 187 (511)
T PRK00074 127 VWMSHGDKVTELPEGF-KVIASTENC-------PIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVF 187 (511)
T ss_pred EEEECCeEEEecCCCc-EEEEEeCCC-------CEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHH
Confidence 6778998876544443 788887653 467775 46899999999998764 89999993
No 45
>PRK05665 amidotransferase; Provisional
Probab=99.89 E-value=2.5e-22 Score=175.99 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=107.2
Q ss_pred CEEEEEecC----------CChHHHH-HHHHhCCC--eEEEeCC-----CCCCCCcCEEEEcCCchhH---HHHHHhhCC
Q 024993 1 MVVGVLALQ----------GSFNEHI-AALKRLGV--KGVEIRK-----PDQLQNVSSLIIPGGESTT---MARLAEYHN 59 (259)
Q Consensus 1 mki~vl~~~----------G~~~~~~-~~L~~~G~--~v~~~~~-----~~~l~~~d~iil~GG~~~~---~~~l~~~~~ 59 (259)
|||+||... |+|..+. +.|...+. ++.++.. +.+++++|++|++||+.+. ..|+. .
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~---~ 79 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQ---T 79 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHH---H
Confidence 899999732 4566644 45666664 4455432 3356789999999996443 23443 3
Q ss_pred HHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCcccee
Q 024993 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRG 139 (259)
Q Consensus 60 ~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 139 (259)
+.++|++++++++|+||||+|+|+|++++|+ +|.+++.| .+.|+..++..
T Consensus 80 l~~~i~~~~~~~~PilGIC~GhQlla~AlGG--------------~V~~~~~G------------~e~G~~~~~~~---- 129 (240)
T PRK05665 80 LKTYLLKLYERGDKLLGVCFGHQLLALLLGG--------------KAERASQG------------WGVGIHRYQLA---- 129 (240)
T ss_pred HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCC--------------EEEeCCCC------------cccceEEEEec----
Confidence 5789999999999999999999999999963 45443211 12233222211
Q ss_pred eeecCcccccCCCCEE--EEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE-eCCEEEEEECccCCCc
Q 024993 140 VFIRAPAVLDVGPDVD--VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTAD 208 (259)
Q Consensus 140 ~~~~~pl~~~~~~~~~--~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~-~~~v~gvQfHPE~~~~ 208 (259)
...+++...+..+. ..|.+.+...+.+. .++|+++.+ .+++++ .+++||+|||||++.+
T Consensus 130 --~~~~~~~~~~~~~~~~~~H~D~V~~LP~ga-~~La~s~~~-------~~q~~~~~~~~~g~QfHPE~~~~ 191 (240)
T PRK05665 130 --AHAPWMSPAVTELTLLISHQDQVTALPEGA-TVIASSDFC-------PFAAYHIGDQVLCFQGHPEFVHD 191 (240)
T ss_pred --CCCccccCCCCceEEEEEcCCeeeeCCCCc-EEEEeCCCC-------cEEEEEeCCCEEEEecCCcCcHH
Confidence 13456666555443 45666654444443 788988765 356665 4579999999999875
No 46
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.89 E-value=2e-22 Score=199.49 Aligned_cols=174 Identities=16% Similarity=0.178 Sum_probs=123.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCC--CCC---CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP--DQL---QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~--~~l---~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
+||+||++.+++. ++.++|++.|+++.+++.. +++ .++|+||++||+....+ .+..+.|+++++.++|+
T Consensus 517 ~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d-----~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 517 RRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPAD-----FDVAGTIDAALARGLPV 591 (717)
T ss_pred CEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchh-----cccHHHHHHHHHCCCCE
Confidence 5799999876555 6779999999999888643 222 46999999887654322 12357788888899999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccc-cCCCCccceeeeecCcccccCCC-
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGP- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~pl~~~~~~- 152 (259)
||||+|||+|+.++| +++.+ .+.+++|| +.+... ..+++|.+++.
T Consensus 592 LGICLG~QlLa~a~G--------------G~V~~-------------~~~p~~G~~~~V~~~------~~~~Lf~~lp~~ 638 (717)
T TIGR01815 592 FGVCLGLQGMVEAFG--------------GALDV-------------LPEPVHGKASRIRVL------GPDALFAGLPER 638 (717)
T ss_pred EEECHHHHHHhhhhC--------------CEEEE-------------CCCCeeCcceEEEEC------CCChhhhcCCCC
Confidence 999999999999995 34544 23456674 333211 24678888765
Q ss_pred -CEEEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccC--CCc----hHHHHHHHHHHH
Q 024993 153 -DVDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPEL--TAD----TRWHSYFLKMMS 220 (259)
Q Consensus 153 -~~~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~--~~~----~~i~~nfl~~~~ 220 (259)
.++++|||.+.. .+.. ..++|+++++ .++++++ .++||+|||||. +.. .+|++||+..+.
T Consensus 639 ~~v~~~HS~~~~~~~LP~~-~~vlA~s~d~-------~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 639 LTVGRYHSLFARRDRLPAE-LTVTAESADG-------LIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLA 709 (717)
T ss_pred CEEEEECCCCcccccCCCC-eEEEEEeCCC-------cEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHh
Confidence 467789986532 2222 3677877653 5788874 579999999997 321 389999999885
No 47
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.89 E-value=2.5e-22 Score=175.52 Aligned_cols=176 Identities=14% Similarity=0.118 Sum_probs=114.6
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCCCeEEEeCCC------CCCCCcCEEEEcCCchhH------HHHHHhhCCHHHHHHH
Q 024993 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT------MARLAEYHNLFPALRE 66 (259)
Q Consensus 1 mki~vl~~~G--~~~~~~~~L~~~G~~v~~~~~~------~~l~~~d~iil~GG~~~~------~~~l~~~~~~~~~i~~ 66 (259)
|||+|+.... ....+..++++.|+++.++... .+++++|+||++||+... ..++.. ....++|++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~-~~~~~~i~~ 79 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDS-KAEQRLINQ 79 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccch-HHHHHHHHH
Confidence 9999997432 2234567888999988875421 135689999999995432 112200 123578999
Q ss_pred HHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcc
Q 024993 67 FVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPA 146 (259)
Q Consensus 67 ~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl 146 (259)
++++++|+||||+|+|+|++++|+ +|.+++ .+++||..++.+. .+ ..+|+
T Consensus 80 ~~~~~~PvlGIC~G~Qlla~alGg--------------~V~~~~-------------~~e~G~~~v~lt~-~g--~~d~l 129 (235)
T PRK08250 80 AIKAGKAVIGVCLGAQLIGEALGA--------------KYEHSP-------------EKEIGYFPITLTE-AG--LKDPL 129 (235)
T ss_pred HHHcCCCEEEEChhHHHHHHHhCc--------------eeccCC-------------CCceeEEEEEEcc-cc--ccCch
Confidence 999999999999999999999963 443321 1345665544321 11 24678
Q ss_pred cccCCCCEEEE--EeeecCCcccCCCcceeeeecccCCCCCceEEEEE-eCCEEEEEECccCCCchHHHHHHHHH
Q 024993 147 VLDVGPDVDVL--ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTADTRWHSYFLKM 218 (259)
Q Consensus 147 ~~~~~~~~~~~--Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~-~~~v~gvQfHPE~~~~~~i~~nfl~~ 218 (259)
|.++++.+.+. |++....++ + ..++|+++.+ ..++++ ..++||+|||||++. .++++|++.
T Consensus 130 ~~~~~~~~~v~~~H~d~~~lP~-~-a~~LA~s~~~-------~~qa~~~~~~~~g~QfHPE~~~--~~~~~~~~~ 193 (235)
T PRK08250 130 LSHFGSTLTVGHWHNDMPGLTD-Q-AKVLATSEGC-------PRQIVQYSNLVYGFQCHMEFTV--EAVELLIAH 193 (235)
T ss_pred hhcCCCCcEEEEEecceecCCC-C-CEEEECCCCC-------CceEEEeCCCEEEEeecCcCCH--HHHHHHHHh
Confidence 87777665554 544433322 2 3788988764 356666 457999999999987 456666543
No 48
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=7.1e-22 Score=190.33 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=117.4
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC-------CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHc
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~-------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~ 70 (259)
|||+|++++++|.. +.++|+++|+++.++++.. ++ .++|+||++||+.+..+. .....+.+.+..
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-----~~~~~i~~~~~~ 76 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEA-----GCMPELLTRLRG 76 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhC-----CCCHHHHHHHhc
Confidence 58999999999996 5589999999999987531 12 247899999987554221 112233343456
Q ss_pred CCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccC
Q 024993 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (259)
Q Consensus 71 g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~ 150 (259)
++||||||+|||+|+.++|+ ++.+.+ .+..|+... .. ....++|.++
T Consensus 77 ~iPILGIClG~QlLa~a~GG--------------~V~~~~-------------~~~~G~~~~----i~--~~~~~lf~~~ 123 (531)
T PRK09522 77 KLPIIGICLGHQAIVEAYGG--------------YVGQAG-------------EILHGKASS----IE--HDGQAMFAGL 123 (531)
T ss_pred CCCEEEEcHHHHHHHHhcCC--------------EEEeCC-------------ceeeeeEEE----Ee--ecCCccccCC
Confidence 89999999999999999963 333321 011122110 00 0134567666
Q ss_pred CC--CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch---HHHHHHHHHHHhcC
Q 024993 151 GP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKMMSEVG 223 (259)
Q Consensus 151 ~~--~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~---~i~~nfl~~~~~~~ 223 (259)
+. .++.+|++.+...+.. .+++|+++ ..++++++ .++||+|||||...++ .|++||++.|...+
T Consensus 124 ~~~~~v~~~Hs~~v~~lP~~-l~vlA~sd--------~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~ 194 (531)
T PRK09522 124 TNPLPVARYHSLVGSNIPAG-LTINAHFN--------GMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKL 194 (531)
T ss_pred CCCcEEEEehheecccCCCC-cEEEEecC--------CCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcC
Confidence 54 4566899887544443 36778643 24666664 6899999999976554 89999999886544
Q ss_pred CC
Q 024993 224 EG 225 (259)
Q Consensus 224 ~~ 225 (259)
+.
T Consensus 195 ~~ 196 (531)
T PRK09522 195 EP 196 (531)
T ss_pred CC
Confidence 43
No 49
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.88 E-value=4e-22 Score=174.09 Aligned_cols=172 Identities=16% Similarity=0.114 Sum_probs=113.3
Q ss_pred CEEEEEecC--CChHHHHHHHHhCCCeEEEeCCC------CCCCCcCEEEEcCCchhH-----HHHHHhhCCHHHHHHHH
Q 024993 1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREF 67 (259)
Q Consensus 1 mki~vl~~~--G~~~~~~~~L~~~G~~v~~~~~~------~~l~~~d~iil~GG~~~~-----~~~l~~~~~~~~~i~~~ 67 (259)
|+|+||+.. -+...+.++|++.|+++++++.. .++.++|+||++||+... ..++. ...+.|+++
T Consensus 3 ~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~---~~~~~i~~~ 79 (234)
T PRK07053 3 KTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLA---PEIALLRQR 79 (234)
T ss_pred ceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHH---HHHHHHHHH
Confidence 349999853 35667889999999999887542 234679999999985322 23443 356889999
Q ss_pred HHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCccc
Q 024993 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (259)
Q Consensus 68 ~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~ 147 (259)
++.++|+||||+|+|+|+.++|+ +|.+. +..++||..+..+. .+ ..+|+.
T Consensus 80 ~~~~~PvlGIC~G~Qlla~alGg--------------~V~~~-------------~~~e~G~~~i~~t~-~g--~~~pl~ 129 (234)
T PRK07053 80 LAAGLPTLGICLGAQLIARALGA--------------RVYPG-------------GQKEIGWAPLTLTD-AG--RASPLR 129 (234)
T ss_pred HHCCCCEEEECccHHHHHHHcCC--------------cEecC-------------CCCeEeEEEEEEec-cc--cCChhh
Confidence 99999999999999999999964 33221 12244555443211 01 134443
Q ss_pred ccCCCC--EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe-CCEEEEEECccCCCchHHHHHHHH
Q 024993 148 LDVGPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTADTRWHSYFLK 217 (259)
Q Consensus 148 ~~~~~~--~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~-~~v~gvQfHPE~~~~~~i~~nfl~ 217 (259)
+++.. +..+|++.+..++.. .++|+++.+ ..++++. +++||+|||||++. .+++.|+.
T Consensus 130 -~~~~~~~~~~~H~d~~~lP~ga--~~La~s~~~-------~~qaf~~g~~~~g~QfHpE~~~--~~~~~w~~ 190 (234)
T PRK07053 130 -HLGAGTPVLHWHGDTFDLPEGA--TLLASTPAC-------RHQAFAWGNHVLALQFHPEARE--DRFEAWLI 190 (234)
T ss_pred -cCCCcceEEEEeCCEEecCCCC--EEEEcCCCC-------CeeEEEeCCCEEEEeeCccCCH--HHHHHHHH
Confidence 34333 445577666543332 688887764 3466664 57999999999987 45666653
No 50
>PRK13566 anthranilate synthase; Provisional
Probab=99.88 E-value=1.2e-21 Score=194.21 Aligned_cols=174 Identities=15% Similarity=0.168 Sum_probs=122.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCC-----CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~-----~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
|||+|+++.+++. .+.++|++.|+++++++... +..++|+||++||+....+ ....+.|++++++++||
T Consensus 527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d-----~~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD-----FDCKATIDAALARNLPI 601 (720)
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh-----CCcHHHHHHHHHCCCcE
Confidence 7999999876666 46689999999999987542 2247899999887644321 23468888888999999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccc-cCCCCccceeeeecCcccccCCCC
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGPD 153 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~pl~~~~~~~ 153 (259)
||||+|||+|+.++|+ ++.+. +.++.|+ +.+... .++++|.+++..
T Consensus 602 LGIClG~QlLa~alGG--------------~V~~~-------------~~~~~G~~~~V~v~------~~~~Lf~~lp~~ 648 (720)
T PRK13566 602 FGVCLGLQAIVEAFGG--------------ELGQL-------------AYPMHGKPSRIRVR------GPGRLFSGLPEE 648 (720)
T ss_pred EEEehhHHHHHHHcCC--------------EEEEC-------------CCCccCCceEEEEC------CCCchhhcCCCC
Confidence 9999999999999963 44332 1233332 223211 235778777654
Q ss_pred --EEEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCC----c--hHHHHHHHHHHH
Q 024993 154 --VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTA----D--TRWHSYFLKMMS 220 (259)
Q Consensus 154 --~~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~----~--~~i~~nfl~~~~ 220 (259)
++.+|++++.. .+.. ..++|.++++ .++++++ .++||+|||||... + .+|++||++.|.
T Consensus 649 ~~v~~~Hs~~v~~~~Lp~~-~~vlA~s~dg-------~V~ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 649 FTVGRYHSLFADPETLPDE-LLVTAETEDG-------VIMAIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred CEEEEecceeEeeccCCCc-eEEEEEeCCC-------cEEEEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 56788876542 2222 3678887654 6888875 48999999999732 2 289999999874
No 51
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.87 E-value=1.3e-21 Score=165.02 Aligned_cols=171 Identities=23% Similarity=0.190 Sum_probs=113.9
Q ss_pred EEEEEecCCC--hHHHHHHHHhCC---CeEEEeCCC-----CCCCCcCEEEEcCCchhH----HHHHHhhCCHHHHHHHH
Q 024993 2 VVGVLALQGS--FNEHIAALKRLG---VKGVEIRKP-----DQLQNVSSLIIPGGESTT----MARLAEYHNLFPALREF 67 (259)
Q Consensus 2 ki~vl~~~G~--~~~~~~~L~~~G---~~v~~~~~~-----~~l~~~d~iil~GG~~~~----~~~l~~~~~~~~~i~~~ 67 (259)
||+|+..... ...+.++|+++| +++++++.. .+++++|+||++||..+. ..++. .+.+.|+.+
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~---~~~~~i~~~ 77 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLK---KLKELIRQA 77 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHH---HHHHHHHHH
Confidence 5788875433 346778889888 678776532 246799999999986433 22332 357888998
Q ss_pred HHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCccc
Q 024993 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (259)
Q Consensus 68 ~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~ 147 (259)
+++++|+||||+|+|+|+.++++ ++.+.+. .++.||..+..+. .+ ...+++
T Consensus 78 ~~~~~pilgiC~G~q~l~~~lGG--------------~v~~~~~------------~~~~g~~~v~~~~-~~--~~~~l~ 128 (188)
T cd01741 78 LAAGKPVLGICLGHQLLARALGG--------------KVGRNPK------------GWEIGWFPVTLTE-AG--KADPLF 128 (188)
T ss_pred HHCCCCEEEECccHHHHHHHhCC--------------EEecCCC------------cceeEEEEEEecc-cc--ccCchh
Confidence 89999999999999999999953 4443211 1234554443211 00 124556
Q ss_pred ccCCC--CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE-eCCEEEEEECccCCCchHHHHHHH
Q 024993 148 LDVGP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTADTRWHSYFL 216 (259)
Q Consensus 148 ~~~~~--~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~-~~~v~gvQfHPE~~~~~~i~~nfl 216 (259)
.++++ .++.+|++.+...+... .++|+++++ .+++++ ..++||+||||| ..+++||+
T Consensus 129 ~~~~~~~~v~~~H~~~v~~lp~~~-~~la~~~~~-------~v~~~~~~~~~~g~QfHPE----~~~~~~f~ 188 (188)
T cd01741 129 AGLPDEFPVFHWHGDTVVELPPGA-VLLASSEAC-------PNQAFRYGDRALGLQFHPE----ERLLRNFL 188 (188)
T ss_pred hcCCCcceEEEEeccChhhCCCCC-EEeecCCCC-------CcceEEecCCEEEEccCch----HHHHhhhC
Confidence 55544 35678888876444432 788887654 356665 468999999999 57888874
No 52
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.87 E-value=6e-21 Score=191.47 Aligned_cols=187 Identities=14% Similarity=0.163 Sum_probs=122.1
Q ss_pred CEEEEEecCCChHH-HHHHHHhC-CCeEEEeCCCC----C-------CCCcCEEEEcCCchhH--HHHHHhhCCHHHHHH
Q 024993 1 MVVGVLALQGSFNE-HIAALKRL-GVKGVEIRKPD----Q-------LQNVSSLIIPGGESTT--MARLAEYHNLFPALR 65 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~-G~~v~~~~~~~----~-------l~~~d~iil~GG~~~~--~~~l~~~~~~~~~i~ 65 (259)
|+|++|+++++|.. +.++|++. |.+++++++++ + +..+|+|||++|+... ..++.. ..+.|+
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi---~~~~i~ 158 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGI---CLRLLL 158 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHH---HHHHHH
Confidence 89999999999995 56889887 99988887653 1 2468999998876422 122211 234554
Q ss_pred HHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCc
Q 024993 66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP 145 (259)
Q Consensus 66 ~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 145 (259)
++ .++||||||+|||+|+.++|+ ++.+. +.+.+|+... +. .....
T Consensus 159 ~~--~~iPILGICLGhQ~i~~~~Gg--------------~V~~~-------------~~~~HG~~s~----I~--h~~~~ 203 (918)
T PLN02889 159 EC--RDIPILGVCLGHQALGYVHGA--------------RIVHA-------------PEPVHGRLSE----IE--HNGCR 203 (918)
T ss_pred Hh--CCCcEEEEcHHHHHHHHhcCc--------------eEEeC-------------CCceeeeeee----Ee--ecCch
Confidence 43 479999999999999999963 44442 1222332210 00 01345
Q ss_pred ccccCCC------CEEEEEeeecCCcc-cCCCcceeeeeccc---------------------------------CCC--
Q 024993 146 AVLDVGP------DVDVLADYPVPSNK-VLYSSSTVEIQEEN---------------------------------AMP-- 183 (259)
Q Consensus 146 l~~~~~~------~~~~~Hs~~~~~~~-~~~~~~lA~s~~~~---------------------------------~~~-- 183 (259)
+|.+++. .+..+||.+++... +..++++|++++.. ..+
T Consensus 204 lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 283 (918)
T PLN02889 204 LFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGT 283 (918)
T ss_pred hhcCCCcCCCCCceEEeCCCcccccCCCCCceEEEEEECCCccccccccccccccccccccccccccccccccccccccc
Confidence 7777754 45568998875322 12236778765410 000
Q ss_pred -----------CCceEEEEEe--CCEEEEEECccCCCch---HHHHHHHHHHHhcCCC
Q 024993 184 -----------EKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFLKMMSEVGEG 225 (259)
Q Consensus 184 -----------~~~~~~~~~~--~~v~gvQfHPE~~~~~---~i~~nfl~~~~~~~~~ 225 (259)
+...+|++++ .++||+|||||...++ +|++||++.+++|.+.
T Consensus 284 ~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi~t~~G~~l~~nF~~~~~~~~~~ 341 (918)
T PLN02889 284 SWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESIATCYGRQIFKNFREITQDYWLR 341 (918)
T ss_pred ccccccccccCCCCeeEEEEECCCceEEEEeCCccccCchhHHHHHHHHHHHHHHhhc
Confidence 0147899874 4899999999965443 8999999999988643
No 53
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.86 E-value=8e-21 Score=159.29 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=104.8
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEeCCCC-----CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 3 i~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~-----~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|+|+++.+.| ++.++|+++|+++++++... +..++|+||++||+.+..+ .. ...+.+++++++++|+|||
T Consensus 1 i~i~d~g~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~-~~---~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 1 VVVIDFGVKH-NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPAL-LD---EAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CEEEecCcHH-HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhH-hH---HHHHHHHHHHhCCCCEEEE
Confidence 6899986666 67899999999999886542 2247999999998643221 11 2357788888899999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC---E
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD---V 154 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~---~ 154 (259)
|+|+|+|+.++|+ ++.+.+ .++.+. .+++....... +
T Consensus 76 C~G~Q~l~~~~Gg--------------~v~~~~-------------~~~~g~-------------~~~v~~~~~~~~~~v 115 (178)
T cd01744 76 CLGHQLLALALGA--------------KTYKMK-------------FGHRGS-------------NHPVKDLITGRVYIT 115 (178)
T ss_pred CHHHHHHHHHcCC--------------ceecCC-------------CCCCCC-------------ceeeEEcCCCCcEEE
Confidence 9999999999963 232211 111111 01111111111 2
Q ss_pred EEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch----HHHHHHH
Q 024993 155 DVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT----RWHSYFL 216 (259)
Q Consensus 155 ~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~----~i~~nfl 216 (259)
..+|++.+.. .+.. ..++|++... ..+++++. .++||+|||||....+ .+|++|+
T Consensus 116 ~~~H~~~v~~~~lp~~-~~v~a~s~~~------~~i~a~~~~~~~i~GvQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 116 SQNHGYAVDPDSLPGG-LEVTHVNLND------GTVEGIRHKDLPVFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred EcCceEEEcccccCCc-eEEEEEECCC------CcEEEEEECCCCeEEEeeCCCCCCCCCCchHhHhhhC
Confidence 2368887642 2222 3677876321 35777764 4799999999987542 6888884
No 54
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.86 E-value=9.4e-21 Score=170.40 Aligned_cols=172 Identities=16% Similarity=0.255 Sum_probs=123.7
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeCCC---CCC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~---~~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
+|+++++ |-..++++.|..+|+++++++.. +++ -++|+|+|+.|+.+. ..+. ...+.|+++++..+|++|
T Consensus 181 ~Vv~iD~-GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP-~~~~---~~i~~ik~l~~~~iPifG 255 (368)
T COG0505 181 HVVVIDF-GVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP-APLD---YAIETIKELLGTKIPIFG 255 (368)
T ss_pred EEEEEEc-CccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh-hHHH---HHHHHHHHHhccCCCeEE
Confidence 5888886 88889999999999999998753 333 379999999987543 1221 235788999888889999
Q ss_pred EchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEE
Q 024993 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDV 156 (259)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~ 156 (259)
||+|+|+|+.++|. ++.+ ++..|.|. ++|+.+....++++
T Consensus 256 ICLGHQllalA~Ga--------------~T~K-------------mkFGHrG~-------------NhPV~dl~tgrv~I 295 (368)
T COG0505 256 ICLGHQLLALALGA--------------KTYK-------------MKFGHRGA-------------NHPVKDLDTGRVYI 295 (368)
T ss_pred EcHHHHHHHHhcCC--------------ceee-------------cccCCCCC-------------CcCcccccCCeEEE
Confidence 99999999999963 4443 34556663 34554443556665
Q ss_pred ---EEeeecCCcccCCC-cceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch----HHHHHHHHHHHhcCC
Q 024993 157 ---LADYPVPSNKVLYS-SSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT----RWHSYFLKMMSEVGE 224 (259)
Q Consensus 157 ---~Hs~~~~~~~~~~~-~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~----~i~~nfl~~~~~~~~ 224 (259)
.|.|+++....... .++-.+- ++..+++++ ..+++.+|||||.++.+ .+|++|+++++.++.
T Consensus 296 TSQNHGyaVd~~s~~~~~~vth~nl------nDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 296 TSQNHGYAVDEDSLVETLKVTHVNL------NDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELMEAAKK 367 (368)
T ss_pred EecCCceecChhhcCCCceeEEEeC------CCCCccceecCCCceEEEccCCCCCCCCcccHHHHHHHHHHHHHhhc
Confidence 49999876532210 1222221 134677776 45799999999999876 799999999998764
No 55
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.86 E-value=3.1e-21 Score=169.37 Aligned_cols=170 Identities=22% Similarity=0.199 Sum_probs=106.3
Q ss_pred CE-EEEEecCCC----hHHHHHHHHhCCCe---EEEeCC--C----CCCCCcCEEEEcCCchhH-------HHHHHhh-C
Q 024993 1 MV-VGVLALQGS----FNEHIAALKRLGVK---GVEIRK--P----DQLQNVSSLIIPGGESTT-------MARLAEY-H 58 (259)
Q Consensus 1 mk-i~vl~~~G~----~~~~~~~L~~~G~~---v~~~~~--~----~~l~~~d~iil~GG~~~~-------~~~l~~~-~ 58 (259)
|| |+|++.... -.++.++|++.|+. +.+++. . .+++++|+||++||+.+. ..|+... .
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~ 80 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEA 80 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHH
Confidence 77 999985322 12456677777754 554432 1 246789999999985322 2333221 1
Q ss_pred CHHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccce
Q 024993 59 NLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFR 138 (259)
Q Consensus 59 ~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 138 (259)
.+.+.++.++++++|+||||+|+|+|+.++|+ ++.+ +. -.+.||..++.+. .
T Consensus 81 ~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG--------------~V~~-~~------------g~e~G~~~v~l~~-~ 132 (242)
T PRK07567 81 ELSGLLDEVVARDFPFLGACYGVGTLGHHQGG--------------VVDR-TY------------GEPVGAVTVSLTD-A 132 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEchhHHHHHHHcCC--------------EEec-CC------------CCcCccEEEEECC-c
Confidence 12345555568999999999999999999963 4433 11 1134554443211 0
Q ss_pred eeeecCcccccCCCCEE--EEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe-CCEEEEEECccCCCc
Q 024993 139 GVFIRAPAVLDVGPDVD--VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTAD 208 (259)
Q Consensus 139 ~~~~~~pl~~~~~~~~~--~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~-~~v~gvQfHPE~~~~ 208 (259)
+ ..+|+|.+++..+. .+|++.+...+.+. .++|+++.+ .+++++. +++||+|||||++.+
T Consensus 133 g--~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~-~vlA~s~~~-------~vqa~~~~~~~~gvQfHPE~~~~ 195 (242)
T PRK07567 133 G--RADPLLAGLPDTFTAFVGHKEAVSALPPGA-VLLATSPTC-------PVQMFRVGENVYATQFHPELDAD 195 (242)
T ss_pred c--CCChhhcCCCCceEEEeehhhhhhhCCCCC-EEEEeCCCC-------CEEEEEeCCCEEEEEeCCcCCHH
Confidence 1 24678877766554 45777765444432 788887654 4677774 579999999999874
No 56
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.86 E-value=2e-20 Score=172.13 Aligned_cols=167 Identities=14% Similarity=0.237 Sum_probs=111.1
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeCCCC---CCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
||+|+++ |...++.++|+++|+++++++... ++. .+|+||++||+.+.. .+. ...+.++++++ ++|+||
T Consensus 175 ~i~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~-~~~---~~i~~i~~~~~-~~PILG 248 (358)
T TIGR01368 175 RVVVIDF-GVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA-AVE---PAIETIRKLLE-KIPIFG 248 (358)
T ss_pred EEEEEeC-CcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH-HHH---HHHHHHHHHHc-CCCEEE
Confidence 6999997 777789999999999999986532 222 459999999875432 121 23567888876 999999
Q ss_pred EchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEE
Q 024993 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDV 156 (259)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~ 156 (259)
||+|+|+|+.++|+ ++.+. +..|.|.+ +|+......++++
T Consensus 249 IClG~QlLa~a~Gg--------------~v~kl-------------~~gh~G~n-------------hpV~~~~~~~v~i 288 (358)
T TIGR01368 249 ICLGHQLLALAFGA--------------KTYKM-------------KFGHRGGN-------------HPVKDLITGRVEI 288 (358)
T ss_pred ECHHHHHHHHHhCC--------------ceecc-------------CcCcCCCc-------------eeeEECCCCcEEE
Confidence 99999999999963 33221 22233321 2221111123333
Q ss_pred ---EEeeecCCcc-c-CCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch----HHHHHHHHHHH
Q 024993 157 ---LADYPVPSNK-V-LYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT----RWHSYFLKMMS 220 (259)
Q Consensus 157 ---~Hs~~~~~~~-~-~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~----~i~~nfl~~~~ 220 (259)
.|+|++.... . ....+++++.. +..+++++ +.++||+|||||....+ .||++|++.++
T Consensus 289 tsqnH~~aV~~~~l~~~~l~vta~~~n------Dg~Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 289 TSQNHGYAVDPDSLPAGDLEVTHVNLN------DGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred eecCCCcEEcccccCCCceEEEEEECC------CCcEEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 5888875422 1 11356676532 23578887 44799999999987643 69999998875
No 57
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.86 E-value=2.2e-20 Score=171.99 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=111.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCC---CCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
.||+|+++ |...++.++|+++|+++++++... ++. ++|+||++||+.+..+ +. ...+.+++++++++|+|
T Consensus 178 ~~I~viD~-G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~-~~---~~~~~i~~~~~~~~Pil 252 (360)
T PRK12564 178 YKVVAIDF-GVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAA-LD---YAIEMIRELLEKKIPIF 252 (360)
T ss_pred CEEEEEeC-CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHH-HH---HHHHHHHHHHHcCCeEE
Confidence 47999997 777789999999999999987542 222 6899999998643322 11 23577888888899999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCE-
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV- 154 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~- 154 (259)
|||+|+|+|+.++|+ ++.+. +..+.|.+ +|+......+.
T Consensus 253 GIClG~QlLa~a~Gg--------------~v~kl-------------~~gh~G~~-------------~pv~~~~~~~~~ 292 (360)
T PRK12564 253 GICLGHQLLALALGA--------------KTYKM-------------KFGHRGAN-------------HPVKDLETGKVE 292 (360)
T ss_pred EECHHHHHHHHHhCC--------------cEecc-------------CCCccCCc-------------eeeEECCCCcEE
Confidence 999999999999963 33321 12222221 12211111122
Q ss_pred --EEEEeeecCCccc-CCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch----HHHHHHHHHH
Q 024993 155 --DVLADYPVPSNKV-LYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT----RWHSYFLKMM 219 (259)
Q Consensus 155 --~~~Hs~~~~~~~~-~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~----~i~~nfl~~~ 219 (259)
..+|+|++..... ....++|++.. +..+++++. .++||+|||||....+ .+|++|++++
T Consensus 293 its~~H~~~V~~~~lp~~l~v~a~~~~------Dg~iegi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~ 360 (360)
T PRK12564 293 ITSQNHGFAVDEDSLPANLEVTHVNLN------DGTVEGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFVELM 360 (360)
T ss_pred EEecCcccEEcccccCCceEEEEEeCC------CCcEEEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHHHhC
Confidence 2368888752221 11256676532 135788874 4799999999987643 6999999763
No 58
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.85 E-value=4.5e-20 Score=169.54 Aligned_cols=169 Identities=17% Similarity=0.246 Sum_probs=110.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCC---CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
.||+|+++ |-..++.++|+++|+++++++... ++ .++|+||++||+.+..+.. ...+.+++++++ +|+|
T Consensus 168 ~~V~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~----~~~~~i~~~~~~-~Pvl 241 (354)
T PRK12838 168 KHVALIDF-GYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ----PYLPEIKKLISS-YPIL 241 (354)
T ss_pred CEEEEECC-CHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH----HHHHHHHHHhcC-CCEE
Confidence 37999987 777789999999999999986532 23 2689999999875432211 235677777766 9999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEE
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~ 155 (259)
|||+|+|+|+.++|+ ++.+. +..|.|.+ +|+......+++
T Consensus 242 GIClG~QlLa~a~Gg--------------~v~kl-------------~~gh~G~~-------------hpV~~~~~~~~~ 281 (354)
T PRK12838 242 GICLGHQLIALALGA--------------DTEKL-------------PFGHRGAN-------------HPVIDLTTGRVW 281 (354)
T ss_pred EECHHHHHHHHHhCC--------------EEecC-------------CCCccCCc-------------eEEEECCCCeEE
Confidence 999999999999963 44332 12233321 122111112222
Q ss_pred ---EEEeeecCCccc--CCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch----HHHHHHHHHHHh
Q 024993 156 ---VLADYPVPSNKV--LYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT----RWHSYFLKMMSE 221 (259)
Q Consensus 156 ---~~Hs~~~~~~~~--~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~----~i~~nfl~~~~~ 221 (259)
.+|+|++..... ....+.+.+.. +..++++++ .++||+|||||....+ .||++|++++++
T Consensus 282 ~ts~~H~~aV~~~sl~~~~l~v~a~~~~------Dg~Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 282 MTSQNHGYVVDEDSLDGTPLSVRFFNVN------DGSIEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EeccchheEecccccCCCCcEEEEEECC------CCeEEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 258887754221 11245554322 246888874 4799999999986543 799999999864
No 59
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.85 E-value=5.9e-20 Score=169.93 Aligned_cols=171 Identities=13% Similarity=0.261 Sum_probs=110.0
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCC---CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
+||+|+++ |.-.++.++|+++|+++++++... ++ .++|+||++||+.+... +. .+.+.+++++++++|+|
T Consensus 193 ~~I~viD~-g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~-~~---~~i~~i~~~~~~~~Pil 267 (382)
T CHL00197 193 LKIIVIDF-GVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSA-IH---YGIKTVKKLLKYNIPIF 267 (382)
T ss_pred CEEEEEEC-CcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhH-HH---HHHHHHHHHHhCCCCEE
Confidence 57999998 655678999999999999986532 22 26899999998654321 11 13466777777799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEE
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~ 155 (259)
|||+|||+|+.++|+ ++.+.++ .+.+- .+|+ .....++
T Consensus 268 GIClGhQlLa~a~Gg--------------~v~k~~~-------------Gh~g~-------------n~pv--~~~~~v~ 305 (382)
T CHL00197 268 GICMGHQILSLALEA--------------KTFKLKF-------------GHRGL-------------NHPS--GLNQQVE 305 (382)
T ss_pred EEcHHHHHHHHHhCC--------------EEeccCC-------------CCCCC-------------CEec--CCCCceE
Confidence 999999999999963 3433211 11111 1111 1122222
Q ss_pred ---EEEeeecCCcccC--CCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch----HHHHHHHHHHHhcCC
Q 024993 156 ---VLADYPVPSNKVL--YSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT----RWHSYFLKMMSEVGE 224 (259)
Q Consensus 156 ---~~Hs~~~~~~~~~--~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~----~i~~nfl~~~~~~~~ 224 (259)
.+|+|.+...... ...+++.+.. +..++++++ .++||+|||||....+ .+|++|++.+++.+.
T Consensus 306 itsq~H~~~v~~~sv~~~~~~vt~~~~n------Dgtvegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~~~ 379 (382)
T CHL00197 306 ITSQNHGFAVNLESLAKNKFYITHFNLN------DGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIIKHSKS 379 (382)
T ss_pred EeecchheEeeccccCCCCcEEEEEECC------CCCEEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 3577766432211 1244454321 235678764 4799999999987643 599999999976443
No 60
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.85 E-value=4.2e-20 Score=184.17 Aligned_cols=181 Identities=15% Similarity=0.177 Sum_probs=114.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-C--CeEEEeCCCC-------CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHH
Q 024993 1 MVVGVLALQGSFN-EHIAALKRL-G--VKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~-G--~~v~~~~~~~-------~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~ 69 (259)
|||+||+++++|. ++.+.|++. | ++++++++.. ++.++|+||++||+...... . ....++++.+
T Consensus 6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~--~---~~~i~~~i~~ 80 (742)
T TIGR01823 6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNA--Q---DMGIISELWE 80 (742)
T ss_pred ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccch--h---hhHHHHHHHH
Confidence 7899999999998 466888876 3 5667765431 24579999998876432110 0 0123333333
Q ss_pred c----CCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCc
Q 024993 70 M----GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP 145 (259)
Q Consensus 70 ~----g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 145 (259)
. ++|+||||+|+|+|+.++|+ ++.+. +.+++|+... ++ ....+
T Consensus 81 ~~~~~~iPvLGIClG~QlLa~a~GG--------------~v~~~-------------~~~~hG~~~~----v~--~~~~~ 127 (742)
T TIGR01823 81 LANLDEVPVLGICLGFQSLCLAQGA--------------DISRL-------------PTPKHGQVYE----MH--TNDAA 127 (742)
T ss_pred hcccCCCcEEEEchhhHHHHhhcCC--------------EEEEC-------------CCCCcCeEEE----EE--ECCcc
Confidence 2 59999999999999999963 44432 1223343210 00 01345
Q ss_pred ccccCCC-CEEEEEeeecCCcccCC--CcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCc----hHHHHHHH
Q 024993 146 AVLDVGP-DVDVLADYPVPSNKVLY--SSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD----TRWHSYFL 216 (259)
Q Consensus 146 l~~~~~~-~~~~~Hs~~~~~~~~~~--~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~----~~i~~nfl 216 (259)
+|.+++. .++.+|++.+....... ..+++.+.+ +..+++++ +.++||+|||||.... .+|++||+
T Consensus 128 lf~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~------~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl 201 (742)
T TIGR01823 128 IFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEE------GIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFL 201 (742)
T ss_pred ccCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCC------CCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHH
Confidence 6666643 56778999875432221 123333332 24677776 5689999999998543 37999999
Q ss_pred HHHHhcCCC
Q 024993 217 KMMSEVGEG 225 (259)
Q Consensus 217 ~~~~~~~~~ 225 (259)
+++..+++.
T Consensus 202 ~~~~~~~~~ 210 (742)
T TIGR01823 202 KLAFINNVK 210 (742)
T ss_pred HHHHHhhhh
Confidence 999888743
No 61
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=5.7e-20 Score=177.79 Aligned_cols=172 Identities=16% Similarity=0.150 Sum_probs=114.5
Q ss_pred EEEEecCCChHH-HHHHHHhCCCe-EEEeCCCC----CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 3 VGVLALQGSFNE-HIAALKRLGVK-GVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 3 i~vl~~~G~~~~-~~~~L~~~G~~-v~~~~~~~----~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
|+|++++++|.. +.+.|+++|.+ +.++.+.+ ++ .++|+||++||+.+..+. ....+.++. ++.++|+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~----~~~~~li~~-~~~~~Pv 76 (534)
T PRK14607 2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEA----GISVEVIRH-FSGKVPI 76 (534)
T ss_pred EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhC----CccHHHHHH-hhcCCCE
Confidence 899999999995 56899999985 66664332 22 257999999997654321 112355554 4678999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
||||+|||+|+.++|+ ++.+.+ ..+.|+.... .....++|.++++
T Consensus 77 LGIClG~QlLa~a~Gg--------------~V~~~~-------------~~~~G~~~~v------~~~~~~lf~~~~~~~ 123 (534)
T PRK14607 77 LGVCLGHQAIGYAFGG--------------KIVHAK-------------RILHGKTSPI------DHNGKGLFRGIPNPT 123 (534)
T ss_pred EEEcHHHHHHHHHcCC--------------eEecCC-------------ccccCCceeE------EECCCcchhcCCCCc
Confidence 9999999999999963 343321 1123332210 0023456766654
Q ss_pred CEEEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHHHHHH
Q 024993 153 DVDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLKMMS 220 (259)
Q Consensus 153 ~~~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl~~~~ 220 (259)
.++.+|++.+.. .+.. ..++|+++++ .+++++.+ ++||+|||||...+. +|++||++.+.
T Consensus 124 ~v~~~Hs~~v~~~~lp~~-~~vlA~s~d~-------~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 124 VATRYHSLVVEEASLPEC-LEVTAKSDDG-------EIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred EEeeccchheecccCCCC-eEEEEEcCCC-------CEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhh
Confidence 356678887642 2222 3678887654 57888743 699999999976543 89999998774
No 62
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.83 E-value=2.8e-20 Score=161.89 Aligned_cols=87 Identities=29% Similarity=0.526 Sum_probs=68.0
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEeCCC-CCCCCcCEEEEcCCchhH--H--HHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~-~~l~~~d~iil~GG~~~~--~--~~l~~~~~~~~~i~~~~~~g~P 73 (259)
|||+|+.++|.+. ++.++|+++|++++++... ..++++|+||+|||.+.. . ..+.....+.++|++++++++|
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p 80 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP 80 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence 9999999998765 5789999999998887543 347899999999986421 0 1121112356789999999999
Q ss_pred EEEEchhHHHHHHh
Q 024993 74 VWGTCAGLIFLANK 87 (259)
Q Consensus 74 iLGIC~G~QlL~~~ 87 (259)
++|||.|+|+|+.+
T Consensus 81 vlgIC~G~QlLa~~ 94 (227)
T TIGR01737 81 VLGICNGFQILVEA 94 (227)
T ss_pred EEEECHHHHHHHHc
Confidence 99999999999985
No 63
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=99.80 E-value=4.7e-19 Score=143.78 Aligned_cols=194 Identities=37% Similarity=0.634 Sum_probs=129.1
Q ss_pred EEEEecCCChHHHHHHHHhC------CCeE--EEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcC-Cc
Q 024993 3 VGVLALQGSFNEHIAALKRL------GVKG--VEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KP 73 (259)
Q Consensus 3 i~vl~~~G~~~~~~~~L~~~------G~~v--~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g-~P 73 (259)
|+||.+.|.|.+-...++++ ++.+ ..+..++++.++|++|+|||.+..+..+....++.+.+-.++.++ +|
T Consensus 14 IGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~ 93 (226)
T KOG3210|consen 14 IGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKV 93 (226)
T ss_pred EeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCcc
Confidence 89999999999877666643 3333 335667889999999999999888877766567888899999887 99
Q ss_pred EEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC
Q 024993 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~ 153 (259)
++|.|+||-+|++.+..+. --...|++++.+|.|+.||++.+||...-....+- .+-+.|..-|.+.|++..+-+.
T Consensus 94 ~WGTCAGmI~LS~ql~nek-~~~~tL~~lkv~V~RN~FG~QaqSFT~~~~~snfi---~~~~~FpATFIRAPVie~ILD~ 169 (226)
T KOG3210|consen 94 TWGTCAGMIYLSQQLSNEK-KLVKTLNLLKVKVKRNAFGRQAQSFTRICDFSNFI---PHCNDFPATFIRAPVIEEILDP 169 (226)
T ss_pred ceeechhhhhhhhhhcCCc-chhhhhhheeEEEeeccccchhhhheehhcccccc---cCcccCchhheechhHHHhcCc
Confidence 9999999999999886421 13568899999999999999999886321111110 0001122233444444333222
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEE-EEeCCEEEEEECccCCC-chHHHHHHHHH
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVA-VRQGNLLGTAFHPELTA-DTRWHSYFLKM 218 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~-~~~~~v~gvQfHPE~~~-~~~i~~nfl~~ 218 (259)
+.+...|.. .+ ++...+.+ -+++|++++.||||++. +.+|.++|++.
T Consensus 170 I~V~~l~~~---------------~~---nG~~~iVAa~Q~~~iL~TSFHPELa~~D~R~HdW~ire 218 (226)
T KOG3210|consen 170 IHVQVLYKL---------------DG---NGQELIVAAKQKNNILATSFHPELAENDIRFHDWFIRE 218 (226)
T ss_pred hhheEEEEe---------------cC---CCcEEEEEEeccCCEeeeecChhhhcccchHHHHHHHH
Confidence 111111110 11 12334444 45789999999999984 45788888763
No 64
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.80 E-value=6.8e-19 Score=163.58 Aligned_cols=156 Identities=14% Similarity=0.174 Sum_probs=102.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeCCCC---CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
||+++++ |+..++.+.|+++|+++++++... ++ .++|+||++||+.+.. .+. ...+.+++++ .++|+||
T Consensus 242 ~IvviD~-G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~---~~ie~ik~l~-~~iPIlG 315 (415)
T PLN02771 242 HVIAYDF-GIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVP---YAVETVKELL-GKVPVFG 315 (415)
T ss_pred EEEEECC-ChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-Hhh---HHHHHHHHHH-hCCCEEE
Confidence 6888886 899999999999999999987542 22 3689999999865432 111 1345666665 4899999
Q ss_pred EchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEE-
Q 024993 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD- 155 (259)
Q Consensus 77 IC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~- 155 (259)
||+|||+|+.++| +++.+. +..|.|- .+|+......+++
T Consensus 316 ICLGhQlLa~AlG--------------Gkv~K~-------------~~Gh~G~-------------n~pV~~~~~~~v~i 355 (415)
T PLN02771 316 ICMGHQLLGQALG--------------GKTFKM-------------KFGHHGG-------------NHPVRNNRTGRVEI 355 (415)
T ss_pred EcHHHHHHHHhcC--------------CeEEEC-------------CCCcccc-------------eEEEEECCCCCEEE
Confidence 9999999999996 355442 2223332 2333322223444
Q ss_pred --EEEeeecCCcccC-CCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch
Q 024993 156 --VLADYPVPSNKVL-YSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT 209 (259)
Q Consensus 156 --~~Hs~~~~~~~~~-~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~ 209 (259)
.+|+|.++....+ ..++++.+.. +..+++++ ..++||+|||||..+.+
T Consensus 356 tsqnHg~aVd~~sLp~~~~vt~~nln------Dgtvegi~~~~~pi~gVQFHPEa~pgp 408 (415)
T PLN02771 356 SAQNHNYAVDPASLPEGVEVTHVNLN------DGSCAGLAFPALNVMSLQYHPEASPGP 408 (415)
T ss_pred EecCHHHhhccccCCCceEEEEEeCC------CCcEEEEEECCCCEEEEEcCCCCCCCC
Confidence 4688887432221 1256665422 23567776 45899999999998764
No 65
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.80 E-value=1.4e-18 Score=148.23 Aligned_cols=181 Identities=15% Similarity=0.214 Sum_probs=120.2
Q ss_pred ChHHHHHHHHhCCCeEEEeCCC--CCCCCcCEEEEcCCchh-HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 11 SFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~~~~~--~~l~~~d~iil~GG~~~-~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
-|.+..++|++.|++++++++. +++.++|+||||||.+. .+++|.++..+.+.|++++++|+|++|||.|+|+|++.
T Consensus 12 ~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 12 YYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred ccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHH
Confidence 3778999999999999999874 56777999999999754 35667554567899999999999999999999999999
Q ss_pred hccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC---CEEEEEeeecCC
Q 024993 88 AVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP---DVDVLADYPVPS 164 (259)
Q Consensus 88 ~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~---~~~~~Hs~~~~~ 164 (259)
+.+.++...++||++|+++.+.+ +. ++||+.++.. .+.++.. .+. .++++++-.. .
T Consensus 92 ~~d~~g~~~~glGll~~~~~~~~------------~~-~~g~~~~~~~------~~~~~~~-~g~~v~G~E~H~g~t~-~ 150 (198)
T cd03130 92 LDDEEGQSYPMAGVLPGDARMTK------------RL-GLGYREAEAL------GDTLLGK-KGTTLRGHEFHYSRLE-P 150 (198)
T ss_pred hhccCCCEeccccccceeeEEcC------------CC-cccCEEEEee------cCccccC-CCCEEEEEeccCcEee-c
Confidence 97543345789999999998731 23 7888865321 1223211 111 1233333221 1
Q ss_pred cccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHH
Q 024993 165 NKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFL 216 (259)
Q Consensus 165 ~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl 216 (259)
.+.. ........+.. +.....++.+++++|++.|-.+.+++.++++|+
T Consensus 151 ~~~~--~~~~~~~~~~~--~~~~~dG~~~~nv~gtY~Hg~f~~n~~~~~~~~ 198 (198)
T cd03130 151 PPEP--DFAATVRRGRG--IDGGEDGYVYGNVLASYLHLHWASNPDLAERFV 198 (198)
T ss_pred CCCc--ceEEEeccCCC--CCCcccEEEECCEEEEEeeeecccCHHHHHHhC
Confidence 1110 00111111100 011235777789999999998887778888774
No 66
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.79 E-value=2.5e-18 Score=148.87 Aligned_cols=187 Identities=25% Similarity=0.344 Sum_probs=113.7
Q ss_pred CEEEEEecCCChH--HHHHHHH-hCCCeEEEeCC-CCCCCCcCEEEEcCCchhH--H--HHHHhhCCHHHHHHHHHHcCC
Q 024993 1 MVVGVLALQGSFN--EHIAALK-RLGVKGVEIRK-PDQLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~-~~G~~v~~~~~-~~~l~~~d~iil~GG~~~~--~--~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|||+||.++|..+ ++.++|+ ..|+++..+.. ..+++++|+||+|||++.. . ..+.....+.++|++++++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~ 80 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence 8999999999885 4678998 89998877743 3478899999999986421 1 111111345788999999999
Q ss_pred cEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCC-
Q 024993 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG- 151 (259)
Q Consensus 73 PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~- 151 (259)
|++|||.|+|+|+++ |++++++.+++.+. +. ..|..+++.+ .+++++.++.
T Consensus 81 ~ilgIC~G~qlLa~~------------GLL~g~l~~n~~~~----~~-------~~~v~v~i~~-----~~~~~~~~~~~ 132 (219)
T PRK03619 81 PVLGICNGFQILTEA------------GLLPGALTRNASLK----FI-------CRDVHLRVEN-----NDTPFTSGYEK 132 (219)
T ss_pred EEEEECHHHHHHHHc------------CCCCCeEEEcCCCc----EE-------EEEEEEEECC-----CCChhhcCCCC
Confidence 999999999999985 35556666543211 11 1333322211 2456665552
Q ss_pred CCE-E--EE---EeeecCCcc-----cCCCcceeeeecccCCCC-CceEEEEE--eCCEEEEEECccCCCc-------h-
Q 024993 152 PDV-D--VL---ADYPVPSNK-----VLYSSSTVEIQEENAMPE-KKVIVAVR--QGNLLGTAFHPELTAD-------T- 209 (259)
Q Consensus 152 ~~~-~--~~---Hs~~~~~~~-----~~~~~~lA~s~~~~~~~~-~~~~~~~~--~~~v~gvQfHPE~~~~-------~- 209 (259)
... . .. |+|...... .....++..+. .++++ ...++++. +++++|+|||||.... .
T Consensus 133 g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~--~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~ 210 (219)
T PRK03619 133 GEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCD--ENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGL 210 (219)
T ss_pred CCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcC--CCCCCCHHHhcccCCCCCCEEEEeCCCCccccCccCCCcCH
Confidence 222 1 22 333332110 11001112221 12222 23466665 5689999999997632 2
Q ss_pred HHHHHHHH
Q 024993 210 RWHSYFLK 217 (259)
Q Consensus 210 ~i~~nfl~ 217 (259)
.||++|++
T Consensus 211 ~lf~~~v~ 218 (219)
T PRK03619 211 KLFESLLK 218 (219)
T ss_pred HHHHHHhh
Confidence 79999985
No 67
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.79 E-value=5.1e-19 Score=149.77 Aligned_cols=139 Identities=23% Similarity=0.328 Sum_probs=92.2
Q ss_pred HHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEEcCCchhHHH--------H-----HHhhCCHHHHHHHHHHcCCc
Q 024993 14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMA--------R-----LAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil~GG~~~~~~--------~-----l~~~~~~~~~i~~~~~~g~P 73 (259)
++.++|+.+|+.+++++... .+.++|+||+|||.+.... + ........+.++++++.++|
T Consensus 23 ~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~P 102 (189)
T cd01745 23 YYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKP 102 (189)
T ss_pred HHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCC
Confidence 46789999999998887542 2467999999998532110 0 01000125778888889999
Q ss_pred EEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC
Q 024993 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~ 153 (259)
+||||+|+|+|+.++|+ ++.+. + .
T Consensus 103 ilgiC~G~Q~l~~~~Gg--------------~v~~~-------------~-----------------------------~ 126 (189)
T cd01745 103 ILGICRGMQLLNVALGG--------------TLYQD-------------I-----------------------------R 126 (189)
T ss_pred EEEEcchHHHHHHHhCC--------------eEEcC-------------C-----------------------------c
Confidence 99999999999999963 33221 0 1
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe---CCEEEEEECccCCCc--h---HHHHHHH
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ---GNLLGTAFHPELTAD--T---RWHSYFL 216 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~---~~v~gvQfHPE~~~~--~---~i~~nfl 216 (259)
+..+|++.+...+.. .+++|+++++ .+++++. .+++|+|||||.+.. . +||++|+
T Consensus 127 v~~~H~~~v~~~~~~-~~vla~~~d~-------~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 127 VNSLHHQAIKRLADG-LRVEARAPDG-------VIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred eechHHHHHhhcCCC-CEEEEECCCC-------cEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 123455444322222 2567776543 5777764 379999999998765 2 7898884
No 68
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.78 E-value=1.1e-18 Score=154.15 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=103.6
Q ss_pred HHHHHHHhCCCeEEEeCCC----CC----CCCcCEEEEcCCchhH----H------HHHHhhC--CHHHHHHHHHHcCCc
Q 024993 14 EHIAALKRLGVKGVEIRKP----DQ----LQNVSSLIIPGGESTT----M------ARLAEYH--NLFPALREFVKMGKP 73 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~----~~----l~~~d~iil~GG~~~~----~------~~l~~~~--~~~~~i~~~~~~g~P 73 (259)
.+.+++..+|...+.+... +. ++.+|+||++||..+. + .+....+ ...++|+.++++++|
T Consensus 30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~P 109 (254)
T PRK11366 30 KYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIP 109 (254)
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCC
Confidence 3667888888876666532 11 3569999999974211 0 0000001 124778888899999
Q ss_pred EEEEchhHHHHHHhhccccCCCcccccceeeeEEee--ccCCcccc-cccccCC--CcccccCCCCccceeeeecCcccc
Q 024993 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN--FFGSQIQS-FEAELSV--PALASQEGGPETFRGVFIRAPAVL 148 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~--~~~~~~~~-~~~~~~~--~~~g~~~~~~~~~~~~~~~~pl~~ 148 (259)
+||||+|+|+|+.++|+. +.+. .......+ -....+. ....++.++. .++.++.
T Consensus 110 ILGICrG~Qllnva~GGt--------------l~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~-------~~~s~l~ 168 (254)
T PRK11366 110 IFAICRGLQELVVATGGS--------------LHRKLCEQPELLEHREDPELPVEQQYAPSHEVQV-------EEGGLLS 168 (254)
T ss_pred EEEECHhHHHHHHHhCCe--------------EeecccccccccccccCCccccccccCCceEEEE-------CCCCcHH
Confidence 999999999999999742 2211 00000000 0000000 0001111111 1233343
Q ss_pred cC-C--CCEEE--EEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeC--C-EEEEEECccCCCc-----hHHHHHH
Q 024993 149 DV-G--PDVDV--LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--N-LLGTAFHPELTAD-----TRWHSYF 215 (259)
Q Consensus 149 ~~-~--~~~~~--~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~-v~gvQfHPE~~~~-----~~i~~nf 215 (259)
.+ + +.+.+ +|++.+...+.+ +.++|+++++ .+++++.. + ++|+|||||...+ ..+|++|
T Consensus 169 ~i~~~~~~~~Vns~H~q~V~~l~~g-l~v~A~s~dg-------~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~f 240 (254)
T PRK11366 169 ALLPECSNFWVNSLHGQGAKVVSPR-LRVEARSPDG-------LVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGF 240 (254)
T ss_pred HhcCCCceEEeehHHHHHHhhcccc-eEEEEEcCCC-------cEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHH
Confidence 33 2 23332 244434333333 3788887664 68888743 3 7999999997643 2799999
Q ss_pred HHHHHhcCCCcc
Q 024993 216 LKMMSEVGEGTS 227 (259)
Q Consensus 216 l~~~~~~~~~~~ 227 (259)
++.|+.+++.|+
T Consensus 241 v~~~~~~~~~~~ 252 (254)
T PRK11366 241 ITACQHHIAEKQ 252 (254)
T ss_pred HHHHHHHHHhcC
Confidence 999988776543
No 69
>PRK06186 hypothetical protein; Validated
Probab=99.77 E-value=1.3e-18 Score=150.52 Aligned_cols=190 Identities=17% Similarity=0.150 Sum_probs=109.0
Q ss_pred EEEEEe----cCCChHHHHHHHHhCC----CeEEE--eCCC-----CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHH
Q 024993 2 VVGVLA----LQGSFNEHIAALKRLG----VKGVE--IRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (259)
Q Consensus 2 ki~vl~----~~G~~~~~~~~L~~~G----~~v~~--~~~~-----~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~ 66 (259)
|||++- +.++|.|+.++|+..+ .++.+ +... +.|.++|+|++|||++.. .. .+....++.
T Consensus 3 ~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~r-g~----~Gki~ai~~ 77 (229)
T PRK06186 3 RIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYR-ND----DGALTAIRF 77 (229)
T ss_pred EEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcc-cH----hHHHHHHHH
Confidence 677774 3478999999998764 34443 4321 246789999999997642 11 234678888
Q ss_pred HHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeec-cC-CcccccccccC--CCcccccCCCCccceeeee
Q 024993 67 FVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF-FG-SQIQSFEAELS--VPALASQEGGPETFRGVFI 142 (259)
Q Consensus 67 ~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~-~~-~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~ 142 (259)
+.++++|+||||+|||++.-.+. ...+|+-|....... .. .++. ..++ +...+ +.+. ..
T Consensus 78 Are~~iP~LGIClGmQ~avIe~a------rnv~g~~dA~s~E~~~~~~~pvi---~~~~~~~~~~~-h~v~-------l~ 140 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYA------RNVLGWADAAHAETDPEGDRPVI---APLSCSLVEKT-GDIR-------LR 140 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHHH------hhhcCCcCCCcCCCCCCCCCCEE---EECccccccCc-eEEE-------EC
Confidence 89999999999999998665552 123444444332210 00 0000 0000 00001 1111 12
Q ss_pred cCcccccC-CCC-EE--EEEeeecCC-----cccCCCcceeeeecccCCCCCceEEEEE---eCCEEEEEECccCCCch-
Q 024993 143 RAPAVLDV-GPD-VD--VLADYPVPS-----NKVLYSSSTVEIQEENAMPEKKVIVAVR---QGNLLGTAFHPELTADT- 209 (259)
Q Consensus 143 ~~pl~~~~-~~~-~~--~~Hs~~~~~-----~~~~~~~~lA~s~~~~~~~~~~~~~~~~---~~~v~gvQfHPE~~~~~- 209 (259)
++.++..+ +.. +. ..|+|.+.+ .....+.+.|++.++ .+++++ +..++|+|||||+...+
T Consensus 141 ~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG-------~iEaiE~~~hpf~lGVQwHPE~~s~~~ 213 (229)
T PRK06186 141 PGSLIARAYGTLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDG-------DVRAVELPGHPFFVATLFQPERAALAG 213 (229)
T ss_pred CCCHHHHHhCCCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCC-------CEEEEEeCCCCcEEEEeCCCCccCCCC
Confidence 33343333 222 21 235565432 222223677777654 578887 34699999999976532
Q ss_pred ---HHHHHHHHHHH
Q 024993 210 ---RWHSYFLKMMS 220 (259)
Q Consensus 210 ---~i~~nfl~~~~ 220 (259)
.+|+.|++.|.
T Consensus 214 ~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 214 RPPPLVRAFLRAAR 227 (229)
T ss_pred CCCHHHHHHHHHHh
Confidence 79999998875
No 70
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.74 E-value=1.7e-17 Score=147.96 Aligned_cols=160 Identities=17% Similarity=0.241 Sum_probs=90.8
Q ss_pred HHHHHHHhCCCeEEEeCCC---CC----CCCcCEEEEcCCchhH--HHHHHhhCCHHHHHHHHHHc---C--CcEEEEch
Q 024993 14 EHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKM---G--KPVWGTCA 79 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~---~~----l~~~d~iil~GG~~~~--~~~l~~~~~~~~~i~~~~~~---g--~PiLGIC~ 79 (259)
++.+++++.|+.++.+..+ +. ++.+|+|++|||..+. ..+++. ...+++.+++. | +|+||||+
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~---~~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 24 SYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYART---AKIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchH---HHHHHHHHHHhhhcCCCCcEEEEcH
Confidence 5789999999997776433 22 5688999999985321 122221 23344444443 3 89999999
Q ss_pred hHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC-------
Q 024993 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP------- 152 (259)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~------- 152 (259)
|+|+|+.++++. ...+ . .... +..+..++. +....++++|.+++.
T Consensus 101 G~QlL~~~~gg~----~~~~---~-~~~~-----------------~~~~~~l~~---t~~~~~s~lF~~~p~~l~~~l~ 152 (273)
T cd01747 101 GFELLTYLTSGE----TLLL---E-ATEA-----------------TNSALPLNF---TEDALQSRLFKRFPPDLLKSLA 152 (273)
T ss_pred HHHHHHHHhCCC----cccc---C-CCcc-----------------ccceEEEEE---ccccccChhhhcCCHHHHHHHh
Confidence 999999998631 0000 0 0000 000000100 000012344444432
Q ss_pred ---CEEEEEeeecCCccc-------CCCcceeeeecccCCCCCceEEEEEeC--CEEEEEECccCCC
Q 024993 153 ---DVDVLADYPVPSNKV-------LYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA 207 (259)
Q Consensus 153 ---~~~~~Hs~~~~~~~~-------~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~ 207 (259)
.++++|+|++.+... ....++|++.+. ++..++++++.+ ++||+|||||++.
T Consensus 153 ~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~---~g~~fis~ie~~~~pi~gvQFHPEks~ 216 (273)
T cd01747 153 TEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDW---NGVEFISTVEAYKYPIYGVQWHPEKNA 216 (273)
T ss_pred cccHHHhhcccccCHhhcccccccccceEEEEEEecC---CCceEEEEEEecCCceEEEecCCCccc
Confidence 356789998853221 111466776552 124678888866 8999999999543
No 71
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.74 E-value=9.2e-18 Score=144.38 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=105.1
Q ss_pred HHHHHHhCCCeEEEeCCC---C----CCCCcCEEEEcCCch---hH--------HHHHHhhCC--HHHHHHHHHHcCCcE
Q 024993 15 HIAALKRLGVKGVEIRKP---D----QLQNVSSLIIPGGES---TT--------MARLAEYHN--LFPALREFVKMGKPV 74 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~---~----~l~~~d~iil~GG~~---~~--------~~~l~~~~~--~~~~i~~~~~~g~Pi 74 (259)
+.++....|.-..+++.. + .++..|+||++||.+ .. ......+++ -..+||.++++++||
T Consensus 31 yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPI 110 (243)
T COG2071 31 YVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPI 110 (243)
T ss_pred HHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCE
Confidence 456666677766666522 2 246789999999931 10 000001122 257899999999999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccC-CCC
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPD 153 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~-~~~ 153 (259)
||||.|+|+|+.++|++.....+ ...+...+ ++ -...+...+.+.. ..+..+..+ ++.
T Consensus 111 LgICRG~QllNVa~GGtL~q~i~---~~~~~~~H----~~-------~~~~~~~~H~V~i-------~~~s~La~i~g~~ 169 (243)
T COG2071 111 LGICRGLQLLNVALGGTLYQDIS---EQPGHIDH----RQ-------PNPVHIESHEVHI-------EPGSKLAKILGES 169 (243)
T ss_pred EEEccchHHHHHHhcCeeehhhh---cccccccc----cC-------CCCcccceeEEEe-------cCCccHHHhcCcc
Confidence 99999999999999753211110 00011100 00 0011111222211 123333333 322
Q ss_pred EEEEEeeecCCccc--CCCcceeeeecccCCCCCceEEEEEe---CCEEEEEECccCCCch-----HHHHHHHHHHHhc
Q 024993 154 VDVLADYPVPSNKV--LYSSSTVEIQEENAMPEKKVIVAVRQ---GNLLGTAFHPELTADT-----RWHSYFLKMMSEV 222 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~--~~~~~lA~s~~~~~~~~~~~~~~~~~---~~v~gvQfHPE~~~~~-----~i~~nfl~~~~~~ 222 (259)
-..++|+|++..+. ..+.+.|+++++ .++|++. .+++|||||||...+. .+|+.|++.++.+
T Consensus 170 ~~~VNS~HhQaIk~La~~L~V~A~a~DG-------~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 170 EFMVNSFHHQAIKKLAPGLVVEARAPDG-------TVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred ceeecchHHHHHHHhCCCcEEEEECCCC-------cEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 14678887765432 123778887764 7888863 4699999999976542 7999999999876
No 72
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.73 E-value=2.1e-17 Score=157.32 Aligned_cols=200 Identities=17% Similarity=0.228 Sum_probs=113.5
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCC----eEEE--eCCC--------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 2 VVGVLA----LQGSFNEHIAALKRLGV----KGVE--IRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~----~~G~~~~~~~~L~~~G~----~v~~--~~~~--------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
+||++- +.++|.|+.++|+.+|+ ++.+ +... +.+.++|+||+|||+.... . .+....
T Consensus 290 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~--~---~g~i~~ 364 (533)
T PRK05380 290 TIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG--I---EGKILA 364 (533)
T ss_pred EEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc--c---ccHHHH
Confidence 577775 34678899999988764 3333 3221 2467899999999975421 1 234677
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccC--Ccc-cccccccCCC------cccccCCCC
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG--SQI-QSFEAELSVP------ALASQEGGP 134 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~--~~~-~~~~~~~~~~------~~g~~~~~~ 134 (259)
++.+.++++|+||||+|||+|+.+++.. .+|+-|......+.. ..+ ..+....... ..|.+.+.
T Consensus 365 i~~a~e~~iPiLGIClGmQll~va~Ggn------v~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~- 437 (533)
T PRK05380 365 IRYARENNIPFLGICLGMQLAVIEFARN------VLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCK- 437 (533)
T ss_pred HHHHHHCCCcEEEEchHHHHHHHHhccc------ccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEE-
Confidence 8888889999999999999999998641 223333321110000 000 0000000011 11222211
Q ss_pred ccceeeeecCcccccCC-CC-EE--EEEeeecCC-----cccCCCcceeeeecccCCCCCceEEEEEe---CCEEEEEEC
Q 024993 135 ETFRGVFIRAPAVLDVG-PD-VD--VLADYPVPS-----NKVLYSSSTVEIQEENAMPEKKVIVAVRQ---GNLLGTAFH 202 (259)
Q Consensus 135 ~~~~~~~~~~pl~~~~~-~~-~~--~~Hs~~~~~-----~~~~~~~~lA~s~~~~~~~~~~~~~~~~~---~~v~gvQfH 202 (259)
+.++.++..+. .. +. ..|+|.+.+ .....+.+.|++.++ ..+++++. ..++|+|||
T Consensus 438 ------i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~Dg------glVEaIEl~~hpfflGVQwH 505 (533)
T PRK05380 438 ------LKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDG------RLVEIVELPDHPWFVGVQFH 505 (533)
T ss_pred ------ECCCChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEcCCC------CcEEEEEeCCCCEEEEEeCC
Confidence 12333444442 21 21 135555432 111123567776542 36778763 246799999
Q ss_pred ccCCCch----HHHHHHHHHHHhcCCC
Q 024993 203 PELTADT----RWHSYFLKMMSEVGEG 225 (259)
Q Consensus 203 PE~~~~~----~i~~nfl~~~~~~~~~ 225 (259)
||+.+.+ .+|++|+++|.++++.
T Consensus 506 PE~~s~p~~~~pLF~~FV~Aa~~~~~~ 532 (533)
T PRK05380 506 PEFKSRPRRPHPLFAGFVKAALENKKR 532 (533)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhc
Confidence 9987643 7999999999887654
No 73
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.71 E-value=9e-17 Score=137.00 Aligned_cols=98 Identities=31% Similarity=0.514 Sum_probs=76.2
Q ss_pred CEEEEEecCCChHH--HHHHHHhCCCeEEEeCCCC-CCC-CcCEEEEcCCchhH----HHHHHhhCCHHHHHHHHHHcCC
Q 024993 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKPD-QLQ-NVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~G~~v~~~~~~~-~l~-~~d~iil~GG~~~~----~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|||||+.++|+.++ ...+++++|.+++.+.-.+ .+. ++|+|++|||++.. ..++.....+++.++++++.|+
T Consensus 3 ~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~ 82 (231)
T COG0047 3 PKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGK 82 (231)
T ss_pred ceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCC
Confidence 89999999998774 5688999999888876443 345 69999999997532 2233333456788999999999
Q ss_pred cEEEEchhHHHHHHhhccccCCCcccccceeeeEEeec
Q 024993 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF 110 (259)
Q Consensus 73 PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~ 110 (259)
|+||||.|+|+|..+ |++|+...++.
T Consensus 83 ~vLGICNGfQiL~e~------------gLlPGal~~N~ 108 (231)
T COG0047 83 PVLGICNGFQILSEA------------GLLPGALTRNE 108 (231)
T ss_pred eEEEEcchhHHHHHc------------CcCCcceecCC
Confidence 999999999999943 56777777653
No 74
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.70 E-value=3.2e-16 Score=133.23 Aligned_cols=106 Identities=25% Similarity=0.434 Sum_probs=85.9
Q ss_pred EEEEecC--CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhH--HHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 3 VGVLALQ--GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 3 i~vl~~~--G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~--~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
|+|+.++ ||+.++.+++++.|++++++++.++++++|+||||||.... +.++. +..+.+.|++++++|+|+||||
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~-~~~~~~~i~~~~~~g~pvlgiC 79 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLR-KRGLAEAIKNYARAGGPVLGIC 79 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHH-HcCHHHHHHHHHHCCCcEEEEC
Confidence 4677763 79999999999999999999988778899999999986432 33332 2467899999999999999999
Q ss_pred hhHHHHHHhhccccC----CCcccccceeeeEEee
Q 024993 79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHRN 109 (259)
Q Consensus 79 ~G~QlL~~~~~~~~~----g~~~~lG~~~~~v~~~ 109 (259)
.|+|+|++.+.+.++ +..++||++|+++.+.
T Consensus 80 ~G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~~ 114 (194)
T cd01750 80 GGYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEFG 114 (194)
T ss_pred HHHHHhhhhccCCCCcccCCCcccccccceEEEec
Confidence 999999999965322 1268999999998753
No 75
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.70 E-value=4.7e-16 Score=126.21 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=111.6
Q ss_pred EEEEecCCChH-HHHHHH-HhCCCeEEEeCCCC----CC--CCcCEEEE-cC-CchhHHHHHHhhCCHHHHHHHHHHcCC
Q 024993 3 VGVLALQGSFN-EHIAAL-KRLGVKGVEIRKPD----QL--QNVSSLII-PG-GESTTMARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 3 i~vl~~~G~~~-~~~~~L-~~~G~~v~~~~~~~----~l--~~~d~iil-~G-G~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|.+++++++|. ++.++| .+.|+.+.++++++ +| .+++.+++ || |.+.+ .-+ ..+.|+++ .-.+
T Consensus 21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~D-sGI-----s~~~i~~f-~~~i 93 (223)
T KOG0026|consen 21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQD-SGI-----SLQTVLEL-GPLV 93 (223)
T ss_pred EEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCcc-ccc-----hHHHHHHh-CCCC
Confidence 67888889988 466888 67899999998764 33 26788777 44 43321 111 13556655 3579
Q ss_pred cEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC
Q 024993 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (259)
Q Consensus 73 PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~ 152 (259)
|+||||.|.|.|..++|+.- ...+.+++.+++. ++.+-+ ++ ...+|.++++
T Consensus 94 P~fGvCMGlQCi~e~fGGkv--~~a~~~i~HGK~S---------------~i~~D~---------~~---~~G~f~g~~q 144 (223)
T KOG0026|consen 94 PLFGVCMGLQCIGEAFGGKI--VRSPFGVMHGKSS---------------MVHYDE---------KG---EEGLFSGLSN 144 (223)
T ss_pred ceeeeehhhhhhhhhhCcEE--eccCcceeecccc---------------ccccCC---------cc---ccccccCCCC
Confidence 99999999999999996310 0112222222211 122211 11 2346777766
Q ss_pred C--EEEEEeeecCCc--ccCCCcceeeeecccCCCCCceEEEEEeC---CEEEEEECccCC--Cch-HHHHHHHHHHH
Q 024993 153 D--VDVLADYPVPSN--KVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPELT--ADT-RWHSYFLKMMS 220 (259)
Q Consensus 153 ~--~~~~Hs~~~~~~--~~~~~~~lA~s~~~~~~~~~~~~~~~~~~---~v~gvQfHPE~~--~~~-~i~~nfl~~~~ 220 (259)
. +..+||.+-... +..+++++||++++ .+++.|++ ++-|+|||||.- ... .+++||++...
T Consensus 145 ~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG-------~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni~~ 215 (223)
T KOG0026|consen 145 PFIVGRYHSLVIEKDSFPSDELEVTAWTEDG-------LVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVE 215 (223)
T ss_pred CeEEEeeeeeeeecccCCccceeeeEeccCc-------EEEeeeccccccccceeecchhhhhhhhHHHHHHHHHhcc
Confidence 5 456899875433 22345788998764 78888743 589999999943 333 79999998654
No 76
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.69 E-value=1.9e-16 Score=140.30 Aligned_cols=85 Identities=33% Similarity=0.571 Sum_probs=65.3
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEeCCC------CCCCCcCEEEEcCCchh--HH-------HHHHhhCCHHHH
Q 024993 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGEST--TM-------ARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~------~~l~~~d~iil~GG~~~--~~-------~~l~~~~~~~~~ 63 (259)
||||||.++|... +..++|+++|+++.++... .+++++|+||+|||++. .. ..+. ..+.+.
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~--~~l~~~ 81 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLK--AVLRKD 81 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHH--HHHHHH
Confidence 7999999999765 5678999999988876532 24678999999998531 11 1121 123477
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHh
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
|++++++++|+||||.|+|+|+++
T Consensus 82 Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 82 IEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHCCCeEEEECHHHHHHHHC
Confidence 899999999999999999999985
No 77
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.68 E-value=4.2e-17 Score=149.88 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=111.0
Q ss_pred EEEEEecCCChHHHH-HHHHhCCCeEEEeCCC---CCC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFNEHI-AALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~~~~-~~L~~~G~~v~~~~~~---~~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
+|+||++...|..++ +.++++.+..++++-. ..+ ..+.+||++||+.+.++..+ +.+...|-+ -++|+|
T Consensus 18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dA--P~~dp~if~---~~vpvL 92 (552)
T KOG1622|consen 18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDA--PSFDPAIFE---LGVPVL 92 (552)
T ss_pred eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcC--CCCChhHhc---cCCcce
Confidence 589999988899877 6899988776666532 233 36889999999876543322 334455544 589999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC---
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--- 152 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--- 152 (259)
|||+|||+|+...|+ .|.+.. -+++ |-.++..+ ...++|.++..
T Consensus 93 GICYGmQ~i~~~~Gg--------------~V~~~~-~RE~------------G~~eI~v~------~~~~lF~~~~~~~~ 139 (552)
T KOG1622|consen 93 GICYGMQLINKLNGG--------------TVVKGM-VRED------------GEDEIEVD------DSVDLFSGLHKTEF 139 (552)
T ss_pred eehhHHHHHHHHhCC--------------cccccc-ccCC------------CCceEEcC------chhhhhhhhcccce
Confidence 999999999999864 222210 0111 11111110 12346666522
Q ss_pred -CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEE--EeCCEEEEEECccCCCch---HHHHHHH
Q 024993 153 -DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAV--RQGNLLGTAFHPELTADT---RWHSYFL 216 (259)
Q Consensus 153 -~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~--~~~~v~gvQfHPE~~~~~---~i~~nfl 216 (259)
.++..|++.+...+.++ .+.|++.. ...+++ +.+++||+|||||++.+. ++++||+
T Consensus 140 ~~VlltHgdsl~~v~~g~-kv~a~s~n-------~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl 201 (552)
T KOG1622|consen 140 MTVLLTHGDSLSKVPEGF-KVVAFSGN-------KPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFL 201 (552)
T ss_pred eeeeeccccchhhccccc-eeEEeecC-------cceeeehhhhhhhhcCCCCCcccccCchhHHHHHHH
Confidence 26778988776555553 78888754 223444 467899999999988765 8999999
No 78
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.67 E-value=5.3e-15 Score=140.76 Aligned_cols=195 Identities=17% Similarity=0.213 Sum_probs=125.5
Q ss_pred EEEEEecCC---ChHHHHHHHHhCCCeEEEeCC--CCCCCCcCEEEEcCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQG---SFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G---~~~~~~~~L~~~G~~v~~~~~--~~~l~~~d~iil~GG~~~~-~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
||||...+- .|.+.++.|++.|++++.+++ +++++++|+||+|||.+.. ...+..+..+.+.|++++++|+|++
T Consensus 247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~ 326 (451)
T PRK01077 247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIY 326 (451)
T ss_pred eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEE
Confidence 688887541 255778899999999999986 3567899999999998653 2345455678899999999999999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC---
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--- 152 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--- 152 (259)
|||.|+|+|++.+.+.++...+++|++|.++.... +...+|+...+. . .+.++.. .+.
T Consensus 327 aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~~~------------~~~~~g~~~~~~---~---~~~~~~~-~g~~i~ 387 (451)
T PRK01077 327 AECGGLMYLGESLEDADGERHPMVGLLPGEASMTK------------RLQALGYREAEA---L---EDTLLGK-AGERLR 387 (451)
T ss_pred EEcHHHHHHHhhhcCCCCCeeecccccceeEEEcC------------CcccccceEEEe---e---cCCcCCC-CCCEEE
Confidence 99999999999997654445789999999887531 010122221110 0 0111111 111
Q ss_pred CEEEEEeeecCCcccCCCcceeeee-cccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHhc
Q 024993 153 DVDVLADYPVPSNKVLYSSSTVEIQ-EENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEV 222 (259)
Q Consensus 153 ~~~~~Hs~~~~~~~~~~~~~lA~s~-~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~~ 222 (259)
.++++++..... +.. ....... .+. +. ...++.+++++|++.|..+..++.+.++|++.|+.|
T Consensus 388 G~E~H~g~~~~~-~~~--~~~~~~~~~g~---~~-~~dG~~~~nv~gtY~H~~f~~n~~~~~~~l~~~~~~ 451 (451)
T PRK01077 388 GHEFHYSTLETP-EEA--PLYRVRDADGR---PL-GEEGYRRGNVLASYLHLHFASNPDAAARFLAACRRF 451 (451)
T ss_pred EECCCceEeeCC-CCC--ccEEEEeCCCC---CC-cCCeEEeCCEEEEEeEeecccCHHHHHHHHHHHhhC
Confidence 123333322111 111 1111111 110 00 125677789999999999877889999999998754
No 79
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.67 E-value=7.4e-16 Score=142.58 Aligned_cols=194 Identities=17% Similarity=0.303 Sum_probs=135.2
Q ss_pred EEEEEecCC----ChHHHHHHHHhCCCeEEEeCCC--CCCC-CcCEEEEcCCchhH-HHHHHhhCCHHHHHHHHHHcCCc
Q 024993 2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP--DQLQ-NVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 2 ki~vl~~~G----~~~~~~~~L~~~G~~v~~~~~~--~~l~-~~d~iil~GG~~~~-~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
||||-. +- -|.++++.|+++|++++.+++. ++++ ++|+|+|+||+++. .++|..++.+++.|+++++.|+|
T Consensus 247 rIAVA~-D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~p 325 (451)
T COG1797 247 RIAVAR-DAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKP 325 (451)
T ss_pred eEEEEe-cchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCc
Confidence 678775 12 2678999999999999999874 3576 69999999999875 46677766788999999999999
Q ss_pred EEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC
Q 024993 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~ 153 (259)
++|.|.|++.|++.+++.++..++++|++|+.+.+.. ++...|+...+.. .++++. ..++.
T Consensus 326 iyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~------------Rl~~lGY~~~~~~------~d~~~~-~~G~~ 386 (451)
T COG1797 326 IYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTK------------RLQALGYREAEAV------DDTLLL-RAGEK 386 (451)
T ss_pred eEEecccceeehhheeccCCceeeeeeeeccchhhhh------------hhhccceeEEEec------CCcccc-cCCce
Confidence 9999999999999998766667899999999886531 1234565554321 123332 22222
Q ss_pred ---EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHH
Q 024993 154 ---VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 220 (259)
Q Consensus 154 ---~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~ 220 (259)
.+|++|......+. +.......+.. ......+++.+|++|.+.|-...+++.++++|++.|+
T Consensus 387 irGHEFHyS~~~~~~~~---~~a~~~~~g~g--~~~~~~G~~~gnv~asY~H~H~~s~~~~~~~~v~~~~ 451 (451)
T COG1797 387 IRGHEFHYSRLITEEDA---EPAFRVRRGDG--IDNGRDGYRSGNVLASYLHLHFASNPAFAARFVAAAR 451 (451)
T ss_pred eeeeeeeeeecccCCcC---ceeeeeecccC--ccccccceeeCCeEEEEEeeecccCHHHHHHHHHhhC
Confidence 23444432221111 11222221100 0123567889999999999999999999999998773
No 80
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.67 E-value=5.5e-16 Score=147.68 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=108.4
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCC----eEEEe--CCC-------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHH
Q 024993 2 VVGVLA----LQGSFNEHIAALKRLGV----KGVEI--RKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (259)
Q Consensus 2 ki~vl~----~~G~~~~~~~~L~~~G~----~v~~~--~~~-------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i 64 (259)
+||++- +.++|.++.++|+.+|+ .+.+. ... +.+.++|+|++|||+++.. . ......+
T Consensus 291 ~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~--~---~g~i~ai 365 (525)
T TIGR00337 291 TIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG--V---EGKILAI 365 (525)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh--h---cChHHHH
Confidence 567764 23578899999999886 33332 211 1256799999999985431 1 2345678
Q ss_pred HHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccC--Ccccc-cccccCCCc------ccccCCCCc
Q 024993 65 REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG--SQIQS-FEAELSVPA------LASQEGGPE 135 (259)
Q Consensus 65 ~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~--~~~~~-~~~~~~~~~------~g~~~~~~~ 135 (259)
+.+.++++|+||||+|||+|+.+++. +-+|+.++......-+ .++.. ++....+.. .|.+.+.
T Consensus 366 ~~a~e~~iP~LGIClG~Qll~i~~gr------nv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~-- 437 (525)
T TIGR00337 366 KYARENNIPFLGICLGMQLAVIEFAR------NVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCI-- 437 (525)
T ss_pred HHHHHcCCCEEEEcHHHHHHHHHHHH------HhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEE--
Confidence 88888999999999999999999853 2334444433221000 00000 000000111 1222221
Q ss_pred cceeeeecCcccccC-CCC-EE--EEEeeecCCc-----ccCCCcceeeeecccCCCCCceEEEEEe--C-CEEEEEECc
Q 024993 136 TFRGVFIRAPAVLDV-GPD-VD--VLADYPVPSN-----KVLYSSSTVEIQEENAMPEKKVIVAVRQ--G-NLLGTAFHP 203 (259)
Q Consensus 136 ~~~~~~~~~pl~~~~-~~~-~~--~~Hs~~~~~~-----~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~-~v~gvQfHP 203 (259)
...+.++..+ +.. +. ..|+|.+.+. ....+.+.|++.++ ..+++++. . .++|+||||
T Consensus 438 -----i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dg------g~VEaIE~~~hpfflGVQwHP 506 (525)
T TIGR00337 438 -----LKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDG------RLVEIIELPDHPFFVACQFHP 506 (525)
T ss_pred -----ECCCChHHHHhCCCceeecccceEEECHHHHHhhhhCCeEEEEEECCC------CEEEEEEECCCCeEEEEecCC
Confidence 1233333333 221 11 2466665421 11223677777653 47888873 2 366999999
Q ss_pred cCCCch----HHHHHHHH
Q 024993 204 ELTADT----RWHSYFLK 217 (259)
Q Consensus 204 E~~~~~----~i~~nfl~ 217 (259)
|+.+.+ .+|+.|++
T Consensus 507 E~~s~p~~~~~LF~~FV~ 524 (525)
T TIGR00337 507 EFTSRPNRPHPLFLGFVK 524 (525)
T ss_pred CCCCCCCchhHHHHHHHh
Confidence 987543 79999985
No 81
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.67 E-value=8.8e-15 Score=139.16 Aligned_cols=195 Identities=16% Similarity=0.252 Sum_probs=125.2
Q ss_pred EEEEEecCC-C--hHHHHHHHHhCCCeEEEeCCC--CCCCCcCEEEEcCCchhHH-HHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQG-S--FNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G-~--~~~~~~~L~~~G~~v~~~~~~--~~l~~~d~iil~GG~~~~~-~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
+|||+...- | |.+.++.|++.|++++.+++. ++++++|+|+||||+++.. ..+..+..+.+.|++++++|+|++
T Consensus 246 ~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~ 325 (449)
T TIGR00379 246 RIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIY 325 (449)
T ss_pred EEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEE
Confidence 688886431 1 457788999999999999873 5678999999999987653 345445678899999999999999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEE
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~ 155 (259)
|||.|+|+|++.+.+.+ +..+++|++|.+++..+ +...+|+...+. . .+.++.. .+.. .
T Consensus 326 g~CgG~~~L~~~i~~~~-g~~~~~Gllp~~t~~~~------------~~~~~gy~~~~~---~---~~~~~~~-~g~~-~ 384 (449)
T TIGR00379 326 GECGGLMYLSQSLDNFE-GQIFMVGMLPTAATMTG------------RVQGLGYVQAEV---V---NDCLILW-QGEK-F 384 (449)
T ss_pred EEcHHHHHHHhhhcCCC-CceeceeeeeeEEEEcC------------CcccccceEEEE---e---cCccccC-CCCE-E
Confidence 99999999999996533 33599999999987631 111233322110 0 0112211 1111 1
Q ss_pred EEEeeec---CCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHh
Q 024993 156 VLADYPV---PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 221 (259)
Q Consensus 156 ~~Hs~~~---~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~ 221 (259)
.-|.+|. ...+.. ........+.. ......++.+++++|++.|-.+..++++.++|++.|++
T Consensus 385 ~GhEfH~~~~~~~~~~--~~~~~~~~g~g--~~~~~dG~~~~nv~gsY~H~~~~~np~~~~~~l~~~~~ 449 (449)
T TIGR00379 385 RGHEFHYSRMTKLPNA--QFAYRVERGRG--IIDQLDGICVGSVLASYLHLHAGSVPKFAAAFVAFAKK 449 (449)
T ss_pred EEEecCCccCcCCCCc--ceEEEeccCCC--CCCceeEEEeCCEEEEeeeeeCCcCHHHHHHHHHHhhC
Confidence 2233332 111110 11122221110 01123677789999999999987788999999988763
No 82
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.63 E-value=3.7e-15 Score=138.94 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=113.8
Q ss_pred EEEEEe----cCCChHHHHHHHHhCCC------eEEEeCCC-------CCCCC-cCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRKP-------DQLQN-VSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~----~~G~~~~~~~~L~~~G~------~v~~~~~~-------~~l~~-~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
|||++- +.++|.|+.++|+..|+ ++..+... +.+.. +|+|++|||+... .. .+....
T Consensus 290 ~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R-G~----eGkI~A 364 (533)
T COG0504 290 TIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR-GV----EGKIAA 364 (533)
T ss_pred EEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC-ch----HHHHHH
Confidence 467664 56789999999998774 33334321 11222 8999999998632 11 123567
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeecc-C-Ccccccc-cccCCCcccccCCCCccceee
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFF-G-SQIQSFE-AELSVPALASQEGGPETFRGV 140 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~-~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 140 (259)
++.+.++++|+||||+|||++.-.+- .+-+|+-++.....+. . .++..+- .......+|- .++...+.+.
T Consensus 365 i~yAREn~iP~lGIClGmQ~aviE~A------Rnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGG-TmRLG~y~~~ 437 (533)
T COG0504 365 IRYARENNIPFLGICLGMQLAVIEFA------RNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGG-TMRLGAYPCR 437 (533)
T ss_pred HHHHHhcCCCEEEEchhHHHHHHHHH------HHhcCCccCcccccCCCCCCceEEeccccccCCcCCc-eeeccceeee
Confidence 88888899999999999999876552 2334444444332110 0 0000000 0001111110 0111111111
Q ss_pred eecCcccccCCC--CEEEE--EeeecCCc-----ccCCCcceeeeecccCCCCCceEEEEE---eCCEEEEEECccCCCc
Q 024993 141 FIRAPAVLDVGP--DVDVL--ADYPVPSN-----KVLYSSSTVEIQEENAMPEKKVIVAVR---QGNLLGTAFHPELTAD 208 (259)
Q Consensus 141 ~~~~pl~~~~~~--~~~~~--Hs~~~~~~-----~~~~~~~lA~s~~~~~~~~~~~~~~~~---~~~v~gvQfHPE~~~~ 208 (259)
..++.+...+.. .++-- |+|.+... ....+.+.+++.++ ..+..++ +...+|+|||||+++.
T Consensus 438 l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~------~lvEivE~~~hpfFv~~QfHPEf~Sr 511 (533)
T COG0504 438 LKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDG------GLVEIVELPDHPFFVATQFHPEFKSR 511 (533)
T ss_pred cCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCC------CeEEEEEcCCCceEEEEcccccccCC
Confidence 223444444432 33333 55544321 11112455666553 4566665 4458899999999886
Q ss_pred h----HHHHHHHHHHHhcCCC
Q 024993 209 T----RWHSYFLKMMSEVGEG 225 (259)
Q Consensus 209 ~----~i~~nfl~~~~~~~~~ 225 (259)
+ .+|..|++++.++++.
T Consensus 512 P~~phPlf~~fv~Aa~~~~~~ 532 (533)
T COG0504 512 PLRPHPLFVGFVKAALEYKKD 532 (533)
T ss_pred CCCCCccHHHHHHHHHHhhcc
Confidence 5 7999999999887754
No 83
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.63 E-value=1.6e-15 Score=131.21 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEEcCCc-hh-----------HHHHHHhhCCH--HHHHHHHHHcCC
Q 024993 14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGE-ST-----------TMARLAEYHNL--FPALREFVKMGK 72 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil~GG~-~~-----------~~~~l~~~~~~--~~~i~~~~~~g~ 72 (259)
++.++++.+|+.++++.... .++.+|+||+|||. +- ........++. ..+++.+.++++
T Consensus 28 ~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~ 107 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGK 107 (217)
T ss_dssp HHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCC
Confidence 57899999999999887541 24689999999986 21 00111111111 356777777899
Q ss_pred cEEEEchhHHHHHHhhcc
Q 024993 73 PVWGTCAGLIFLANKAVG 90 (259)
Q Consensus 73 PiLGIC~G~QlL~~~~~~ 90 (259)
||||||.|||+|+.++++
T Consensus 108 PilGICrG~Q~lnv~~GG 125 (217)
T PF07722_consen 108 PILGICRGMQLLNVAFGG 125 (217)
T ss_dssp -EEEETHHHHHHHHHCCS
T ss_pred CEEEEcHHHHHHHHHhCC
Confidence 999999999999999975
No 84
>PLN02327 CTP synthase
Probab=99.62 E-value=6.1e-15 Score=140.94 Aligned_cols=203 Identities=17% Similarity=0.133 Sum_probs=109.0
Q ss_pred EEEEEe----cCCChHHHHHHHHhCC----CeEE--EeCCC------------------CCCCCcCEEEEcCCchhHHHH
Q 024993 2 VVGVLA----LQGSFNEHIAALKRLG----VKGV--EIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (259)
Q Consensus 2 ki~vl~----~~G~~~~~~~~L~~~G----~~v~--~~~~~------------------~~l~~~d~iil~GG~~~~~~~ 53 (259)
+||++- +.++|.++.++|+.+| .++. .+... +.+.++|+|++|||+.+..
T Consensus 299 ~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~-- 376 (557)
T PLN02327 299 RIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRG-- 376 (557)
T ss_pred EEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcc--
Confidence 567764 3467889999998765 3333 33211 1256899999999975321
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeec-c-CCcccccccccCCCcccccC
Q 024993 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF-F-GSQIQSFEAELSVPALASQE 131 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~-~-~~~~~~~~~~~~~~~~g~~~ 131 (259)
. .+....++.+.+.++|+||||+|||+++..++. +-+|+-|+...... . ..++..+-.......+|-.
T Consensus 377 ~---~G~i~ai~~are~~iP~LGIClGmQl~viefaR------nvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGt- 446 (557)
T PLN02327 377 V---EGKILAAKYARENKVPYLGICLGMQIAVIEFAR------SVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGT- 446 (557)
T ss_pred c---ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHH------hhcCCcCCCccccCCCCCCCEEEEehhcccccCCce-
Confidence 1 133456777778999999999999999998852 34555555443211 0 0000000000011111100
Q ss_pred CCCccceeeee-cCcccccCCC-C--EE--EEEeeecCCcc-----cCCCcceeeeecccCCCCCceEEEEE--eCC-EE
Q 024993 132 GGPETFRGVFI-RAPAVLDVGP-D--VD--VLADYPVPSNK-----VLYSSSTVEIQEENAMPEKKVIVAVR--QGN-LL 197 (259)
Q Consensus 132 ~~~~~~~~~~~-~~pl~~~~~~-~--~~--~~Hs~~~~~~~-----~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~-v~ 197 (259)
++.....+.+. .+.++..+.. . +. ..|+|.+...- ...+.+.|++.++ ..+++++ ..+ ++
T Consensus 447 MRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg------~~IEaiE~~~~pffv 520 (557)
T PLN02327 447 MRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETG------RRMEIVELPSHPFFV 520 (557)
T ss_pred EECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCC------CEEEEEEeCCCCEEE
Confidence 00000000011 2223333311 1 22 23666654321 1113566766543 3577875 334 55
Q ss_pred EEEECccCCCch----HHHHHHHHHHHhc
Q 024993 198 GTAFHPELTADT----RWHSYFLKMMSEV 222 (259)
Q Consensus 198 gvQfHPE~~~~~----~i~~nfl~~~~~~ 222 (259)
|+|||||+.+.+ .+|..|++.|.+.
T Consensus 521 GVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~ 549 (557)
T PLN02327 521 GVQFHPEFKSRPGKPSPLFLGLIAAASGQ 549 (557)
T ss_pred EEEcCCCCCCCCCCchHHHHHHHHHHHHh
Confidence 999999986542 8999999988653
No 85
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.60 E-value=5.1e-15 Score=123.77 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=100.0
Q ss_pred CCChHHHH-HHHHhCCCeEEEeCC-------CCCCCCcCEEEEcCCchhH---HHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 9 QGSFNEHI-AALKRLGVKGVEIRK-------PDQLQNVSSLIIPGGESTT---MARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 9 ~G~~~~~~-~~L~~~G~~v~~~~~-------~~~l~~~d~iil~GG~~~~---~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
.|+|.++. ..|...|..+.+++. .+++++||+++|+|+..++ .+|+. .+.+.+++.....++|+||
T Consensus 23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~---KLcs~~kkld~mkkkvlGI 99 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIK---KLCSFVKKLDFMKKKVLGI 99 (245)
T ss_pred hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHH---HHHHHHHHHHhhccceEEE
Confidence 46777765 567778876665431 2478899999999984332 45654 3678888888889999999
Q ss_pred chhHHHHHHhhccccCCCccc--ccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--C
Q 024993 78 CAGLIFLANKAVGQKLGGQEL--VGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~--lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~ 153 (259)
|+|||+++++.|+.-....+| +++-..+++.. ... ....|..++. +
T Consensus 100 CFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~---------------~~~---------------~~~yFG~~~~~l~ 149 (245)
T KOG3179|consen 100 CFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKD---------------AEK---------------PEKYFGEIPKSLN 149 (245)
T ss_pred eccHHHHHHhhCCccccCCCCCcccccceEEEEe---------------ccc---------------chhhcccchhhhh
Confidence 999999999997421111111 11111111110 000 0112221222 2
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCc
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD 208 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~ 208 (259)
+.-.|++.+...|.+. +++|.|+.+ .+.+....++++++|=|||+..+
T Consensus 150 IikcHqDevle~PE~a-~llasSe~c------eve~fs~~~~~l~fQGHPEyn~e 197 (245)
T KOG3179|consen 150 IIKCHQDEVLELPEGA-ELLASSEKC------EVEMFSIEDHLLCFQGHPEYNKE 197 (245)
T ss_pred HHhhcccceecCCchh-hhhcccccc------ceEEEEecceEEEecCCchhhHH
Confidence 2346888876555543 788988765 45555567789999999998765
No 86
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.60 E-value=2.8e-14 Score=134.53 Aligned_cols=189 Identities=19% Similarity=0.201 Sum_probs=120.7
Q ss_pred EEEEEec---CCChHHHHHHHHhCCCeEEEeCC--CCCCCCcCEEEEcCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~---~G~~~~~~~~L~~~G~~v~~~~~--~~~l~~~d~iil~GG~~~~-~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
||||-.- .=-|.++++.|+++ ++++.+++ ++.++++|+|+||||+++. ..++..+ ...+.|++++++|+|++
T Consensus 235 ~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~~~L~~n-~~~~~i~~~~~~G~pi~ 312 (433)
T PRK13896 235 TVAVARDAAFCFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHADALADS-PALDELADRAADGLPVL 312 (433)
T ss_pred eEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHHHHHHhC-CcHHHHHHHHHCCCcEE
Confidence 5777641 11277899999999 99999987 4567899999999998754 3456553 34489999999999999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC---
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--- 152 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--- 152 (259)
|||.|+|+|++.+.+.++..++++|++|.++...+ +...+|+...+.. .++++.. .+.
T Consensus 313 aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m~~------------r~~~lGy~~~~~~------~~~~~~~-~G~~i~ 373 (433)
T PRK13896 313 GECGGLMALAESLTTTDGDTHEMAGVLPADVTMQD------------RYQALDHVELRAT------DDTLTAG-AGETLR 373 (433)
T ss_pred EEehHHHHhhccccCCCCCEecccceeeEEEEEcc------------ceeEEEeEEEEEc------cCccccC-CCCeEE
Confidence 99999999999997654456899999999987642 1112343322110 0122221 111
Q ss_pred CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHH
Q 024993 153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKM 218 (259)
Q Consensus 153 ~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~ 218 (259)
.+++++|... ..... ........+..+ ...+ +++.++|++|++.|-.+.++ ++++|++.
T Consensus 374 GhEfHys~~~-~~~~~--~~~~~~~~g~g~-~~~~-dG~~~~nv~asY~H~hf~~~--~~~~f~~~ 432 (433)
T PRK13896 374 GHEFHYSSAT-VGSDA--RFAFDVERGDGI-DGEH-DGLTEYRTLGTYAHVHPESG--AFDRFLEA 432 (433)
T ss_pred EEeeeCeEEE-CCCCC--ceEEEeccCCCC-CCcc-cEEEECCEEEEehhhcCCch--HHHHHHhh
Confidence 2334434322 11111 112222211100 0112 67778999999999998775 88888764
No 87
>PRK00784 cobyric acid synthase; Provisional
Probab=99.60 E-value=3.4e-14 Score=136.44 Aligned_cols=184 Identities=20% Similarity=0.280 Sum_probs=119.0
Q ss_pred EEEEEecC--CChHHHHHHHHh-CCCeEEEeCCCCCCCCcCEEEEcCCchhH--HHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 2 VVGVLALQ--GSFNEHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 2 ki~vl~~~--G~~~~~~~~L~~-~G~~v~~~~~~~~l~~~d~iil~GG~~~~--~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
||+|+.++ -+| +.++.|++ .|++++++++.++++++|+||||||.+.. ++++ ++..+.+.|++++++|+|+||
T Consensus 253 ~i~v~~~~~a~~f-~nl~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~-~~~~l~~~i~~~~~~g~pilg 330 (488)
T PRK00784 253 RIAVIRLPRISNF-TDFDPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWL-RESGWDEAIRAHARRGGPVLG 330 (488)
T ss_pred EEEEEeCCCcCCc-cChHHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHH-HHcCHHHHHHHHHHcCCeEEE
Confidence 79999854 345 67788887 99999999988888899999999987643 2333 346788999999999999999
Q ss_pred EchhHHHHHHhhccccC-----CCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCC
Q 024993 77 TCAGLIFLANKAVGQKL-----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (259)
Q Consensus 77 IC~G~QlL~~~~~~~~~-----g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~ 151 (259)
||.|+|+|++.+.+.++ +..+++|++|+++...+. . ..++...... .....+
T Consensus 331 ~C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~~~~------------~-~~g~~~~~~~------~~g~~~---- 387 (488)
T PRK00784 331 ICGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVFEPE------------K-TLRQVTGLLL------GSGAPV---- 387 (488)
T ss_pred ECHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEecCc------------e-EEccEEEEEc------CCCceE----
Confidence 99999999999954321 224899999999875320 0 1121110000 000000
Q ss_pred CCEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCchHHHHHHHHHHHh
Q 024993 152 PDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADTRWHSYFLKMMSE 221 (259)
Q Consensus 152 ~~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~~i~~nfl~~~~~ 221 (259)
..+++++|......... . +.....+ . ..++.+ +|++|++.|-.+.. +.|.++|++.|+.
T Consensus 388 ~GhEfH~s~~~~~~~~~--~-~~~~~~g------~-~~G~~~~~~nv~atY~H~~~~n-p~~~~~~l~~~~~ 448 (488)
T PRK00784 388 SGYEIHMGRTTGPALAR--P-FLRLDDG------R-PDGAVSADGRVFGTYLHGLFDN-DAFRRALLNWLGA 448 (488)
T ss_pred EEEEecCcEeeCCCCCc--C-cEEecCC------C-cCceEecCCCEEEEeeeeccCC-HHHHHHHHHHHHH
Confidence 01233333211110000 1 1111111 1 255666 89999999998765 7999999999864
No 88
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.59 E-value=1.7e-14 Score=126.16 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=56.6
Q ss_pred EEEEEec----CCChHHHHHHHHh----CCCeEEE--eCCC--------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 2 VVGVLAL----QGSFNEHIAALKR----LGVKGVE--IRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~~----~G~~~~~~~~L~~----~G~~v~~--~~~~--------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
+||++-- ..+|.++.++|.. .+.++.+ +... +.+.++|+||++||+... .+ ......
T Consensus 2 ~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~--~~---~~~~~~ 76 (235)
T cd01746 2 RIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR--GV---EGKILA 76 (235)
T ss_pred EEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc--ch---hhHHHH
Confidence 5666642 2356666666654 4444544 3221 235689999999987432 11 123567
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHhhcc
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANKAVG 90 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~~~~ 90 (259)
++.+.+.++|+||||+|+|+|+.+++.
T Consensus 77 i~~~~~~~~PvlGIClG~Q~l~~~~g~ 103 (235)
T cd01746 77 IKYARENNIPFLGICLGMQLAVIEFAR 103 (235)
T ss_pred HHHHHHCCceEEEEEhHHHHHHHHHHH
Confidence 888888999999999999999999964
No 89
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=136.14 Aligned_cols=174 Identities=16% Similarity=0.214 Sum_probs=112.5
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCC--CCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQL--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l--~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
||++++ .|-..+.++.|..+|+++.+++...++ .+||+|++++|+. +..+.+ ..-+++.++.++|++||
T Consensus 174 ~I~aiD-cG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~~~------v~~vr~lL~~~~PvfGI 246 (1435)
T KOG0370|consen 174 RILAID-CGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCPLL------VQNVRELLESNVPVFGI 246 (1435)
T ss_pred EEEEcc-cCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhHHH------HHHHHHHHhCCCCeEEE
Confidence 567775 488888999999999999999765444 3899999998764 333332 34455666667999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEE-
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDV- 156 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~- 156 (259)
|+|||+|+.+.|. ++.+. +..+.|- +.|.......+++.
T Consensus 247 ClGHQllA~AaGa--------------kT~Km-------------KyGNRGh-------------NiP~~~~~tGrc~IT 286 (1435)
T KOG0370|consen 247 CLGHQLLALAAGA--------------KTYKM-------------KYGNRGH-------------NIPCTCRATGRCFIT 286 (1435)
T ss_pred ehhhHHHHHhhCC--------------ceEEe-------------eccccCC-------------CccceeccCceEEEE
Confidence 9999999999962 33332 2222231 22333233344443
Q ss_pred --EEeeecCCcccCC--CcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch----HHHHHHHHHHHhcCCCcc
Q 024993 157 --LADYPVPSNKVLY--SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT----RWHSYFLKMMSEVGEGTS 227 (259)
Q Consensus 157 --~Hs~~~~~~~~~~--~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~----~i~~nfl~~~~~~~~~~~ 227 (259)
.|.|.++.+.... .+.....+++ ......+...|++.+|||||.+..+ .+|+.|+....+++-...
T Consensus 287 SQNHGYAVD~~tLp~gWk~lFvN~NDg-----SNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~t 360 (1435)
T KOG0370|consen 287 SQNHGYAVDPATLPAGWKPLFVNANDG-----SNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPT 360 (1435)
T ss_pred ecCCceeeccccccCCCchheeecccC-----CCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCc
Confidence 4888876432111 0111111121 1223334456999999999998765 689999999988876655
No 90
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.53 E-value=5.2e-13 Score=120.23 Aligned_cols=142 Identities=14% Similarity=0.079 Sum_probs=82.6
Q ss_pred CCcCEEEEcCCchh--H---HHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhcccc--CCCcccccceeeeEEe
Q 024993 36 QNVSSLIIPGGEST--T---MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQK--LGGQELVGGLDCTVHR 108 (259)
Q Consensus 36 ~~~d~iil~GG~~~--~---~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~--~g~~~~lG~~~~~v~~ 108 (259)
.++||+|++|++-+ . ..+..+...+.++++ +..+|+||||.|+|+++.++++.. ..+.++.|+...++.
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~- 173 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVL- 173 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEc-
Confidence 47999999998633 1 122211112334444 468999999999999999997521 011122222111110
Q ss_pred eccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEEEEeeecCC----c-ccCCCcceeeeecccCCC
Q 024993 109 NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPS----N-KVLYSSSTVEIQEENAMP 183 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~----~-~~~~~~~lA~s~~~~~~~ 183 (259)
. ..+||+.++++.+..-||..... . ....+.++|.++.+
T Consensus 174 ------------------------------~--~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~---- 217 (302)
T PRK05368 174 ------------------------------D--PHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEA---- 217 (302)
T ss_pred ------------------------------C--CCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecCCCC----
Confidence 0 24578888887777777753221 1 11224788888764
Q ss_pred CCceEEEEE-eCCEEEEEECccCCCchHHHHHHHHHHH
Q 024993 184 EKKVIVAVR-QGNLLGTAFHPELTADTRWHSYFLKMMS 220 (259)
Q Consensus 184 ~~~~~~~~~-~~~v~gvQfHPE~~~~~~i~~nfl~~~~ 220 (259)
++.+... ..+++++|+|||+..+ .+.+...+.++
T Consensus 218 --gv~~~~~~~~r~~~vQgHPEYd~~-tL~~EY~RD~~ 252 (302)
T PRK05368 218 --GVYLFASKDKREVFVTGHPEYDAD-TLAQEYFRDLG 252 (302)
T ss_pred --CeEEEEeCCCCEEEEECCCCCCHH-HHHHHHHHHHh
Confidence 3333333 5579999999999875 45555554444
No 91
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.52 E-value=1.4e-13 Score=131.10 Aligned_cols=97 Identities=25% Similarity=0.400 Sum_probs=68.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCC-eEEE--eCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGV-KGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~-~v~~--~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|||+||++.|.+. +++..|. ++.+ ++.++++.++|+||+|||.......+. ..+.+.|+++ |+|+|||
T Consensus 1 m~iGvlal~sv~~----al~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~~~l~--~~l~~~i~~~---g~pvlGI 71 (476)
T PRK06278 1 MEIGLLDIKGSLP----CFENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVESGSLT--DELKKEILNF---DGYIIGI 71 (476)
T ss_pred CEEEEEehhhHHH----HHHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhcchHH--HHHHHHHHHc---CCeEEEE
Confidence 9999999765554 5655554 4444 677788999999999998532222221 2344555554 9999999
Q ss_pred chhHHHHHHhhccccC----CCcccccceeeeE
Q 024993 78 CAGLIFLANKAVGQKL----GGQELVGGLDCTV 106 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~----g~~~~lG~~~~~v 106 (259)
|+|||+|++.+.+... +..++||++|.+.
T Consensus 72 CgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~~ 104 (476)
T PRK06278 72 CSGFQILSEKIDIGRKSPVPIIKEGLGLLDVEF 104 (476)
T ss_pred cHHHHhcccccccCcccccccccCccceeeeee
Confidence 9999999998853211 2378999999874
No 92
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.51 E-value=1e-13 Score=121.48 Aligned_cols=84 Identities=27% Similarity=0.458 Sum_probs=65.0
Q ss_pred EEEEecCCChH--HHHHHHHhCCCeEEEeCCCC------CCCCcCEEEEcCCchhHHHHHH-----hhCC-HHHHHHHHH
Q 024993 3 VGVLALQGSFN--EHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLA-----EYHN-LFPALREFV 68 (259)
Q Consensus 3 i~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~------~l~~~d~iil~GG~~~~~~~l~-----~~~~-~~~~i~~~~ 68 (259)
||||.++|+.. ++.++|++.|+++++++..+ +++++|+||+|||+... +.+. ..+. +.+.|++++
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~-d~l~~~~~~~~~~~~~~~l~~~~ 79 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYG-DYLRAGAIAAASPLLMEEVKEFA 79 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcc-cccccccccccChhHHHHHHHHH
Confidence 68999999765 67899999999998876432 46789999999996421 1111 1122 568899999
Q ss_pred HcCCcEEEEchhHHHHHHh
Q 024993 69 KMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 69 ~~g~PiLGIC~G~QlL~~~ 87 (259)
++++|+||||.|+|+|+++
T Consensus 80 ~~g~pvlGIC~G~QlL~~~ 98 (238)
T cd01740 80 ERGGLVLGICNGFQILVEL 98 (238)
T ss_pred hCCCeEEEECcHHHHHHHc
Confidence 9999999999999999986
No 93
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.9e-13 Score=126.86 Aligned_cols=179 Identities=18% Similarity=0.222 Sum_probs=104.1
Q ss_pred EEEEEecCCChH-HHHHHHHhC-CCeEE-EeCCC-------C---CCCCcCEEEE-cC-CchhHHHHHHhhCCHHHHHHH
Q 024993 2 VVGVLALQGSFN-EHIAALKRL-GVKGV-EIRKP-------D---QLQNVSSLII-PG-GESTTMARLAEYHNLFPALRE 66 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~-G~~v~-~~~~~-------~---~l~~~d~iil-~G-G~~~~~~~l~~~~~~~~~i~~ 66 (259)
+++.|+.+++|+ ++.++|... |+..+ ++... + +...+|+||+ || |.+...+++.. +.+.+..
T Consensus 16 ~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI---~~rl~~~ 92 (767)
T KOG1224|consen 16 RTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGI---CLRLLLE 92 (767)
T ss_pred eEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHH---HHHHHHh
Confidence 578899889998 566888654 54333 33321 1 2235899988 44 43322233221 1233332
Q ss_pred HHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeee-ecCc
Q 024993 67 FVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVF-IRAP 145 (259)
Q Consensus 67 ~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p 145 (259)
+ +.+||||||+|+|.|+.+-| ++|.+.+ .|.+|- +.++. .+.-
T Consensus 93 ~--~~iPilGICLGfQal~l~hG--------------A~v~~~n-------------~p~HGr-------vs~i~~~~~~ 136 (767)
T KOG1224|consen 93 C--RDIPILGICLGFQALGLVHG--------------AHVVHAN-------------EPVHGR-------VSGIEHDGNI 136 (767)
T ss_pred c--CCCceeeeehhhHhHhhhcc--------------cceecCC-------------Ccccce-------eeeEEecCcE
Confidence 2 47999999999999998875 2333321 111120 00110 1223
Q ss_pred ccccCC----C--CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHH
Q 024993 146 AVLDVG----P--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSY 214 (259)
Q Consensus 146 l~~~~~----~--~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~n 214 (259)
+|.+++ . +...+||.++.+.+...+..++++++.+ ....+.+. +.+.||+|||||.-... .+++|
T Consensus 137 ~f~gi~sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddn----g~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkN 212 (767)
T KOG1224|consen 137 LFSGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDN----GHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKN 212 (767)
T ss_pred EEccCCCCCcccceeEEeEEEEecCCchhhhcceeEeecCC----ceEEEEeeccCCCccceeeChHHhhhhhhHHHHHH
Confidence 455553 2 3567899988766554445666665531 13556665 45899999999965433 89999
Q ss_pred HHHHHHhcC
Q 024993 215 FLKMMSEVG 223 (259)
Q Consensus 215 fl~~~~~~~ 223 (259)
|+...-.+-
T Consensus 213 Fl~lt~~~n 221 (767)
T KOG1224|consen 213 FLDLTVNYN 221 (767)
T ss_pred HHHhhccCc
Confidence 997664443
No 94
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.51 E-value=1.3e-13 Score=122.02 Aligned_cols=87 Identities=33% Similarity=0.470 Sum_probs=61.0
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEeCC------CCCCCCcCEEEEcCCchhH--------H-HHHHhhCCHHHH
Q 024993 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT--------M-ARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~------~~~l~~~d~iil~GG~~~~--------~-~~l~~~~~~~~~ 63 (259)
.||+|+.++|+.+ ++..+|+..|++++.+.. ...++++|+|++|||++.. . ..+..+..+.+.
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~ 81 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA 81 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence 4899999999866 467899999998887642 2467899999999986421 1 122112456899
Q ss_pred HHHHHHc-CCcEEEEchhHHHHHHh
Q 024993 64 LREFVKM-GKPVWGTCAGLIFLANK 87 (259)
Q Consensus 64 i~~~~~~-g~PiLGIC~G~QlL~~~ 87 (259)
|++++++ |+++||||.|+|+|.+.
T Consensus 82 i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 82 IREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred HHHHHhcCCCeEEEEchHhHHHHHh
Confidence 9999998 99999999999999865
No 95
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.46 E-value=1.4e-12 Score=110.45 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=111.8
Q ss_pred ChHHHHHHHHhCCCeEEEe--CCCCC--CCCcCEEEEcCCchhHHHHHHhh-CCHHHHHHHHHHcCCcEEEEchhHHHHH
Q 024993 11 SFNEHIAALKRLGVKGVEI--RKPDQ--LQNVSSLIIPGGESTTMARLAEY-HNLFPALREFVKMGKPVWGTCAGLIFLA 85 (259)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~~--~~~~~--l~~~d~iil~GG~~~~~~~l~~~-~~~~~~i~~~~~~g~PiLGIC~G~QlL~ 85 (259)
|..-+.++.+.+|+.+.+. +..+. .+.+|.+++.||.+...+-..++ ....+.|++++++++|+|+||.|+|+|+
T Consensus 22 Nil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG 101 (250)
T COG3442 22 NILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLG 101 (250)
T ss_pred ceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhcc
Confidence 3444567888999877764 33332 25799999999976442211111 2235789999999999999999999999
Q ss_pred HhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCccccc--CCCCEE-E-EEeee
Q 024993 86 NKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD--VGPDVD-V-LADYP 161 (259)
Q Consensus 86 ~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~--~~~~~~-~-~Hs~~ 161 (259)
+++....+....+||++|..+.... ..++...+++. +...+ +.+.++ | .|+=.
T Consensus 102 ~yY~~a~G~ri~GlGiLd~~T~~~~----~~R~IGdiv~~-------------------~~~~~e~~~et~~GFENH~Gr 158 (250)
T COG3442 102 QYYETASGTRIDGLGILDHYTENPQ----TKRFIGDIVIE-------------------NTLAGEEFGETLVGFENHGGR 158 (250)
T ss_pred ceeecCCCcEeecccceeeeecccc----ccceeeeEEee-------------------cccchHHhCCeeeeeecCCCc
Confidence 9998666667899999998775310 00111111110 10000 111111 1 23211
Q ss_pred cCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEEC-ccCCCchHHHHHHHHHHH
Q 024993 162 VPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFH-PELTADTRWHSYFLKMMS 220 (259)
Q Consensus 162 ~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfH-PE~~~~~~i~~nfl~~~~ 220 (259)
....+. ...+....++..++...-..+..+++++|++|| |-++.++++..++++.+=
T Consensus 159 T~L~~d--~~pLG~Vv~G~GNn~eD~~eG~~ykn~~aTY~HGP~L~rNp~LAd~Ll~tAl 216 (250)
T COG3442 159 TYLGPD--VKPLGKVVYGYGNNGEDGTEGAHYKNVIATYFHGPILSRNPELADRLLTTAL 216 (250)
T ss_pred eecCCC--CccceeEEEccCCCccccccceeeeeeEEEeecCccccCCHHHHHHHHHHHH
Confidence 111111 023445445444444455677888999999999 667778888898887654
No 96
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=99.43 E-value=1.9e-12 Score=106.62 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=63.0
Q ss_pred CCCCCcCEEEEcCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhc-----cccCCCcccccceeeeE
Q 024993 33 DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV-----GQKLGGQELVGGLDCTV 106 (259)
Q Consensus 33 ~~l~~~d~iil~GG~~~~-~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~-----~~~~g~~~~lG~~~~~v 106 (259)
+.++++|+|+||||.++. ...+.++..+.+.|++++++|+||+|||.|+|+|++.+. +.....++++|++|..+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t 82 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT 82 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence 456799999999998754 234545578899999999999999999999999999997 33333589999999998
Q ss_pred Eee
Q 024993 107 HRN 109 (259)
Q Consensus 107 ~~~ 109 (259)
...
T Consensus 83 ~~~ 85 (158)
T PF07685_consen 83 TME 85 (158)
T ss_pred EEc
Confidence 763
No 97
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.39 E-value=1.2e-11 Score=118.39 Aligned_cols=105 Identities=26% Similarity=0.391 Sum_probs=78.3
Q ss_pred EEEEEecCC--ChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhH--HHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 2 VVGVLALQG--SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 2 ki~vl~~~G--~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~--~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+|||+.++- ||. .+++|+..- .+...+.+++++++|+||+|||.+.. +.+++ +..+.+.|++++++|+||+||
T Consensus 249 ~Iav~~~~~~~nf~-~~~~L~~~~-~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~-~~~~~~~i~~~~~~G~pvlgi 325 (475)
T TIGR00313 249 RIGVVRLPRISNFT-DFEPLRYEA-FVKFLDLDDSLTGCDAVIIPGSKSTIADLYALK-QSGFAEEILDFAKEGGIVIGI 325 (475)
T ss_pred EEEEEcCCcccCcc-ChHHHhhCC-CeEEeCCccccccCCEEEECCcchHHHHHHHHH-hcChHHHHHHHHHcCCcEEEE
Confidence 688988543 344 566777662 34444555678899999999997643 33333 367889999999999999999
Q ss_pred chhHHHHHHhhcccc-----CCCcccccceeeeEEee
Q 024993 78 CAGLIFLANKAVGQK-----LGGQELVGGLDCTVHRN 109 (259)
Q Consensus 78 C~G~QlL~~~~~~~~-----~g~~~~lG~~~~~v~~~ 109 (259)
|.|+|+|++.+.+.+ .+..+++|++|.+++..
T Consensus 326 CgG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~~ 362 (475)
T TIGR00313 326 CGGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYFG 362 (475)
T ss_pred cHHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEEc
Confidence 999999999986532 23568999999988753
No 98
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.33 E-value=2e-11 Score=126.64 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=66.8
Q ss_pred CEEEEEecCCChHH--HHHHHHhCCCeEEEeC--CC-------------CCCCCcCEEEEcCCchh--HH----H---HH
Q 024993 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--KP-------------DQLQNVSSLIIPGGEST--TM----A---RL 54 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~G~~v~~~~--~~-------------~~l~~~d~iil~GG~~~--~~----~---~l 54 (259)
|||+|+.++|+.++ ...+|+++|+++..+. +. ..|.++++|++|||++. .. . .+
T Consensus 978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857 978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence 69999999998875 5688999998776653 21 24678999999999742 11 1 22
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+..+.+.++++++.++++||||.|+|+|++.
T Consensus 1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred hhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 223457788999999999999999999999975
No 99
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.30 E-value=1.5e-11 Score=113.45 Aligned_cols=96 Identities=18% Similarity=0.305 Sum_probs=62.0
Q ss_pred EEEEEe----cCCChHHHHHHHHhCC------CeEEEeCCC--C----------------CCCCcCEEEEcCCchhHHHH
Q 024993 2 VVGVLA----LQGSFNEHIAALKRLG------VKGVEIRKP--D----------------QLQNVSSLIIPGGESTTMAR 53 (259)
Q Consensus 2 ki~vl~----~~G~~~~~~~~L~~~G------~~v~~~~~~--~----------------~l~~~d~iil~GG~~~~~~~ 53 (259)
+||++- +.++|.++.++|+.+. .++..+... + .+..+|+|++|||+...-
T Consensus 300 ~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RG-- 377 (585)
T KOG2387|consen 300 RIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRG-- 377 (585)
T ss_pred EEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccc--
Confidence 466664 3468999999998654 244444321 0 245799999999986421
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEe
Q 024993 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~ 108 (259)
. .+....++-+.++++|+||||+|||+-.-.+- .+.||+-|+..+.
T Consensus 378 v---eG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfa------RnvLg~~dAnStE 423 (585)
T KOG2387|consen 378 V---EGKILAAKWARENKIPFLGICLGMQLAVIEFA------RNVLGLKDANSTE 423 (585)
T ss_pred h---hHHHHHHHHHHhcCCCeEeeehhhhHHHHHHH------HHhhCCCCCCccc
Confidence 0 12344556666789999999999998765542 3455665655443
No 100
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.17 E-value=1.4e-09 Score=102.82 Aligned_cols=105 Identities=22% Similarity=0.387 Sum_probs=82.8
Q ss_pred EEEEEecC--CChHHHHHHHHh-CCCeEEEeCCCCCCCCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 2 VVGVLALQ--GSFNEHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 2 ki~vl~~~--G~~~~~~~~L~~-~G~~v~~~~~~~~l~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
+|+|+.++ .||.+ ...|+. .++++.++++.+++.++|++||||... ..+.++++ ..+.+.|.++++.+.||+|
T Consensus 253 ~Iav~~lp~isNFtD-~dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~-~g~d~~i~~~~~~~~~viG 330 (486)
T COG1492 253 RIAVIRLPRISNFTD-FDPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILRE-GGMDEKILEYARKGGDVIG 330 (486)
T ss_pred EEEEecCCCcccccc-chhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHH-cCHHHHHHHHHhCCCCEEE
Confidence 68888875 24554 445554 489999999999999999999999854 34566765 6788899999989999999
Q ss_pred EchhHHHHHHhhcccc-----CCCcccccceeeeEEe
Q 024993 77 TCAGLIFLANKAVGQK-----LGGQELVGGLDCTVHR 108 (259)
Q Consensus 77 IC~G~QlL~~~~~~~~-----~g~~~~lG~~~~~v~~ 108 (259)
||.|+|+|++.+-+.. .+...|||++|.++..
T Consensus 331 ICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~~ 367 (486)
T COG1492 331 ICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETCF 367 (486)
T ss_pred EcchHHhhhhhhcCcccccCcccccCCccceEEEEEe
Confidence 9999999999997631 1236799999998764
No 101
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.13 E-value=4.8e-10 Score=117.26 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=66.5
Q ss_pred CEEEEEecCCChHH--HHHHHHhCCCeEEEeCCC------CCCCCcCEEEEcCCchh--H-------HHHHHhhCCHHHH
Q 024993 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGEST--T-------MARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~G~~v~~~~~~------~~l~~~d~iil~GG~~~--~-------~~~l~~~~~~~~~ 63 (259)
|||+|+.++|+.++ ...+|+.+|+++..+... ..|+++++|++|||++. . ...+..+..+.+.
T Consensus 1038 pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~ 1117 (1307)
T PLN03206 1038 PKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQ 1117 (1307)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHH
Confidence 68999999998774 668999999877665421 34789999999999742 1 1123333456788
Q ss_pred HHHHHH-cCCcEEEEchhHHHHHHh
Q 024993 64 LREFVK-MGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 64 i~~~~~-~g~PiLGIC~G~QlL~~~ 87 (259)
++++++ .+.++||||.|+|+|++.
T Consensus 1118 ~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1118 FQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHc
Confidence 999994 599999999999999975
No 102
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.09 E-value=9.6e-10 Score=115.53 Aligned_cols=88 Identities=23% Similarity=0.275 Sum_probs=66.6
Q ss_pred CEEEEEecCCChHH--HHHHHHhCCCeEEEeCCC------CCCCCcCEEEEcCCchh--H----H---HHHHhhCCHHHH
Q 024993 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGEST--T----M---ARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~G~~v~~~~~~------~~l~~~d~iil~GG~~~--~----~---~~l~~~~~~~~~ 63 (259)
+||||+.++|..++ ...+|+..|+++..+... ..|+++++|++|||++. . . ..+..+..+.+.
T Consensus 1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735 1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence 58999999998774 668999999877665421 24789999999999642 1 1 113233456788
Q ss_pred HHHHH-HcCCcEEEEchhHHHHHHhh
Q 024993 64 LREFV-KMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 64 i~~~~-~~g~PiLGIC~G~QlL~~~~ 88 (259)
+++++ +.+.++||||.|+|+|++.+
T Consensus 1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~~ 1161 (1310)
T TIGR01735 1136 FQAFFKRPDTFSLGVCNGCQMLSNLL 1161 (1310)
T ss_pred HHHHHhCCCceEEEecHHHHHHHHHh
Confidence 99999 78999999999999999544
No 103
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.06 E-value=4.2e-10 Score=118.37 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=65.7
Q ss_pred CEEEEEecCCChHH--HHHHHHhCCCeEEEeC--C----CCCCCCcCEEEEcCCchh--H----H---HHHHhhCCHHHH
Q 024993 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--T----M---ARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~G~~v~~~~--~----~~~l~~~d~iil~GG~~~--~----~---~~l~~~~~~~~~ 63 (259)
+||+|+.++|+.++ ...+|+.+|+++..+. + ...|+++++|++|||++. . . ..+..+..+.+.
T Consensus 1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~ 1115 (1290)
T PRK05297 1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQ 1115 (1290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHH
Confidence 68999999998774 6689999998876654 2 134789999999999642 1 1 111122356788
Q ss_pred HHHHH-HcCCcEEEEchhHHHHHHh
Q 024993 64 LREFV-KMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 64 i~~~~-~~g~PiLGIC~G~QlL~~~ 87 (259)
+++++ +.+.++||||.|+|+|.+.
T Consensus 1116 ~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1116 FEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHh
Confidence 88877 6789999999999999986
No 104
>PHA03366 FGAM-synthase; Provisional
Probab=98.97 E-value=8.9e-09 Score=108.46 Aligned_cols=87 Identities=24% Similarity=0.262 Sum_probs=65.6
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEeC--C---CCCCCCcCEEEEcCCchh--H-------HHHHHhhCCHHHHH
Q 024993 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--K---PDQLQNVSSLIIPGGEST--T-------MARLAEYHNLFPAL 64 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~~~G~~v~~~~--~---~~~l~~~d~iil~GG~~~--~-------~~~l~~~~~~~~~i 64 (259)
.||||+.++|... +...+|.++|+++..+. + ...++++++|+++||++. . ...+..+..+.+.+
T Consensus 1029 prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~ 1108 (1304)
T PHA03366 1029 HRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDAL 1108 (1304)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHH
Confidence 4899999999877 46789999999877654 2 123889999999998642 1 11222234567888
Q ss_pred HHHHH-cCCcEEEEch-hHHHHHHh
Q 024993 65 REFVK-MGKPVWGTCA-GLIFLANK 87 (259)
Q Consensus 65 ~~~~~-~g~PiLGIC~-G~QlL~~~ 87 (259)
+++.+ .+.++||||. |+|+|++.
T Consensus 1109 ~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1109 LRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 89884 5999999998 99999974
No 105
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.94 E-value=4.3e-09 Score=90.65 Aligned_cols=106 Identities=21% Similarity=0.213 Sum_probs=76.8
Q ss_pred EEEEEecCC-ChH----HHHHHHHhC-CCeEEEeC-----C-CCCCCCcCEEEEcCCch-hHHHHHHhhCCHHHHHHHHH
Q 024993 2 VVGVLALQG-SFN----EHIAALKRL-GVKGVEIR-----K-PDQLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFV 68 (259)
Q Consensus 2 ki~vl~~~G-~~~----~~~~~L~~~-G~~v~~~~-----~-~~~l~~~d~iil~GG~~-~~~~~l~~~~~~~~~i~~~~ 68 (259)
||++|-... .+. ++.++++++ |++++.+. . .+.+.++|+|++|||.. ..+..+++ ..+.+.|++++
T Consensus 33 ~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~-~~l~~~l~~~~ 111 (212)
T cd03146 33 KVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWRE-HGLDAILKAAL 111 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHH-cCHHHHHHHHH
Confidence 577776433 222 456788999 99888875 2 23567999999999843 44666765 57888999988
Q ss_pred HcCCcEEEEchhHHHHHHhhccc-----cC-CCcccccceeeeEEe
Q 024993 69 KMGKPVWGTCAGLIFLANKAVGQ-----KL-GGQELVGGLDCTVHR 108 (259)
Q Consensus 69 ~~g~PiLGIC~G~QlL~~~~~~~-----~~-g~~~~lG~~~~~v~~ 108 (259)
++|+|++|+|+|+|+|+..+... +. ...++||++|..+..
T Consensus 112 ~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~p 157 (212)
T cd03146 112 ERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQICP 157 (212)
T ss_pred HCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCccccC
Confidence 89999999999999999853211 11 246789999876543
No 106
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.74 E-value=7.4e-08 Score=101.12 Aligned_cols=86 Identities=28% Similarity=0.291 Sum_probs=64.6
Q ss_pred EEEEEecCCChH--HHHHHHHhCCCeEEEeCCC-----CCCCCcCEEEEcCCchh--H-------HHHHHhhCCHHHHHH
Q 024993 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGEST--T-------MARLAEYHNLFPALR 65 (259)
Q Consensus 2 ki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~-----~~l~~~d~iil~GG~~~--~-------~~~l~~~~~~~~~i~ 65 (259)
||||+.++|... +...+|+++|+++..+... ..++++++|+++||++. . ...+..+..+.+.++
T Consensus 931 ~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~ 1010 (1202)
T TIGR01739 931 QVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLL 1010 (1202)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHH
Confidence 699999999877 4678999999987766421 24678999999998641 1 112222345678888
Q ss_pred HHHH-cCCcEEEEch-hHHHHHHh
Q 024993 66 EFVK-MGKPVWGTCA-GLIFLANK 87 (259)
Q Consensus 66 ~~~~-~g~PiLGIC~-G~QlL~~~ 87 (259)
++++ .+.++||||. |+|+|++.
T Consensus 1011 ~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1011 TFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHhCCCceEEEeCcHHHHHHHHc
Confidence 9984 5999999998 99999974
No 107
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=98.71 E-value=3.1e-08 Score=85.52 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCeEEEeCC--CC-----CCCCcCEEEEcCCchhH--HHHHHhhCCHHHHHHHHHHcC--CcEEEEchhHH
Q 024993 14 EHIAALKRLGVKGVEIRK--PD-----QLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMG--KPVWGTCAGLI 82 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~--~~-----~l~~~d~iil~GG~~~~--~~~l~~~~~~~~~i~~~~~~g--~PiLGIC~G~Q 82 (259)
++++.++..|++|+.+.. ++ .++-.++||++||.... +-.+.+ +-+...|. ..++| .|+.|||+|+.
T Consensus 81 SYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvk-kifnk~le-~nDaGehFPvyg~CLGFE 158 (340)
T KOG1559|consen 81 SYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVK-KIFNKVLE-RNDAGEHFPVYGICLGFE 158 (340)
T ss_pred HHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHH-HHHHHHHh-ccCCccccchhhhhhhHH
Confidence 678889999999987643 33 24568999999995321 112211 01122232 22334 89999999999
Q ss_pred HHHHhhc
Q 024993 83 FLANKAV 89 (259)
Q Consensus 83 lL~~~~~ 89 (259)
+|.-.+.
T Consensus 159 ~lsmiIS 165 (340)
T KOG1559|consen 159 LLSMIIS 165 (340)
T ss_pred HHHHHHh
Confidence 9998774
No 108
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=98.71 E-value=7.4e-07 Score=82.51 Aligned_cols=193 Identities=21% Similarity=0.280 Sum_probs=110.1
Q ss_pred CEEEEEecCCC----hHHHHHHHHhC---CCeEEEeCCC----CC-CCCcCEEEEcCCchhHH-HHHHhhCCHHHHHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRL---GVKGVEIRKP----DQ-LQNVSSLIIPGGESTTM-ARLAEYHNLFPALREF 67 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~---G~~v~~~~~~----~~-l~~~d~iil~GG~~~~~-~~l~~~~~~~~~i~~~ 67 (259)
|+|+|-+-.|. ....++.|++. .+.|..+... +. ..+++.+|+|||.+..+ ..+.. .-.+.||+|
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~--~g~~~Ir~f 78 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLNG--EGNRRIRQF 78 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhCh--HHHHHHHHH
Confidence 89999876663 33445566542 3566655421 22 35789999999975332 22321 236789999
Q ss_pred HHcCCcEEEEchhHHHHHHhhccccCC------CcccccceeeeEEeecc-CCcccccccccCCCcccccC--CCCccce
Q 024993 68 VKMGKPVWGTCAGLIFLANKAVGQKLG------GQELVGGLDCTVHRNFF-GSQIQSFEAELSVPALASQE--GGPETFR 138 (259)
Q Consensus 68 ~~~g~PiLGIC~G~QlL~~~~~~~~~g------~~~~lG~~~~~v~~~~~-~~~~~~~~~~~~~~~~g~~~--~~~~~~~ 138 (259)
+++|.-+||||+|..+-+..+....+. +.+.|+++++.+.-..+ |..+.+... .+....-|.. .....+.
T Consensus 79 V~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~~gf~Y~se~G-ara~~l~~~~~~~~~~~~~ 157 (367)
T PF09825_consen 79 VENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAFPGFQYNSESG-ARAVKLKVNDSQAVPSEFS 157 (367)
T ss_pred HHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccccCCccCCCCC-eEeEEEEecCCCCCCceeE
Confidence 999999999999999888766432111 24578888887654321 112111100 0001111221 1123355
Q ss_pred eeeecCcccccCC---CCEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCC
Q 024993 139 GVFIRAPAVLDVG---PDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTA 207 (259)
Q Consensus 139 ~~~~~~pl~~~~~---~~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~ 207 (259)
.+|+..+.|.+.. .++.++.+|.....-+......| .+.+-+.++.++-+-+|||+++
T Consensus 158 ~yynGG~~Fv~~~~~~~~v~vLA~Y~~~~~v~~~~~~aA-----------vV~c~vGkG~aiLsG~HpE~~~ 218 (367)
T PF09825_consen 158 SYYNGGGVFVDADKYDKNVEVLARYEDDLDVPGGEGKAA-----------VVYCKVGKGRAILSGPHPEFSP 218 (367)
T ss_pred EEECCceEEeCccccCCCeEEEEEEecCCCCCCCCCCcE-----------EEEEEeCCceEEEEecccccCh
Confidence 6777778876652 46788888865322111000001 1223344778999999999864
No 109
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.66 E-value=1.5e-07 Score=81.47 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=62.7
Q ss_pred EEEEEec-----CCCh----HHHHHHHHhCCCeEEEeCCC---------------------------------C---C--
Q 024993 2 VVGVLAL-----QGSF----NEHIAALKRLGVKGVEIRKP---------------------------------D---Q-- 34 (259)
Q Consensus 2 ki~vl~~-----~G~~----~~~~~~L~~~G~~v~~~~~~---------------------------------~---~-- 34 (259)
||+|+-. .|.. ....++|++.|++++++++. . +
T Consensus 3 kVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ 82 (217)
T PRK11780 3 KIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEAD 82 (217)
T ss_pred EEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCC
Confidence 7998864 4432 24568899999988886420 0 1
Q ss_pred CCCcCEEEEcCCchhH--H-------HHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 35 LQNVSSLIIPGGESTT--M-------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 35 l~~~d~iil~GG~~~~--~-------~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
.++||+||+|||.... + +.++.+..+.+.++++.++|+|+.+||.|.++|+.++
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 2379999999995421 1 2233334577899999999999999999999999875
No 110
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=98.59 E-value=5.5e-07 Score=78.71 Aligned_cols=105 Identities=22% Similarity=0.358 Sum_probs=77.7
Q ss_pred EEEEEecCC---ChHH----HHHHHHhCCCeEEEeCCCCC----CCCcCEEEEcCCchhH-HHHHHhhCCHHHHHHHHHH
Q 024993 2 VVGVLALQG---SFNE----HIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVK 69 (259)
Q Consensus 2 ki~vl~~~G---~~~~----~~~~L~~~G~~v~~~~~~~~----l~~~d~iil~GG~~~~-~~~l~~~~~~~~~i~~~~~ 69 (259)
||++|-.-+ ++.. ..++++++|++++.++..++ +.++|+|+++||.... +..++. .++.+.|+++++
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~-~gl~~~l~~~~~ 111 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYE-RGLLAPIREAVK 111 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHH-CCcHHHHHHHHH
Confidence 577776433 3333 45678889999888876655 7899999999997644 344543 678899999999
Q ss_pred cCCcEEEEchhHHHHHHhhcccc------CCCcccccceeeeEE
Q 024993 70 MGKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVH 107 (259)
Q Consensus 70 ~g~PiLGIC~G~QlL~~~~~~~~------~g~~~~lG~~~~~v~ 107 (259)
+|+|++|+|+|+.+++..+.... .....+||+++..+.
T Consensus 112 ~G~~~~G~SAGAii~~~~i~~~~~~~~~~~~~~~gLglv~~~i~ 155 (233)
T PRK05282 112 NGTPYIGWSAGANVAGPTIRTTNDMPIVDPPSFDALGLFPFQIN 155 (233)
T ss_pred CCCEEEEECHHHHhhhccceecCCCCcccccCCCcccceeeeec
Confidence 99999999999999998775321 112568888886554
No 111
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.46 E-value=1e-06 Score=72.40 Aligned_cols=84 Identities=27% Similarity=0.411 Sum_probs=61.4
Q ss_pred EEEEEecCCChH----HHHHHHHhCCCeEEEeCCC------------------CCCC--CcCEEEEcCCchhHHHHHHhh
Q 024993 2 VVGVLALQGSFN----EHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAEY 57 (259)
Q Consensus 2 ki~vl~~~G~~~----~~~~~L~~~G~~v~~~~~~------------------~~l~--~~d~iil~GG~~~~~~~l~~~ 57 (259)
||+|+.++|-.. ...+.|++.|+++.+++.. ++++ ++|+|++|||... ..+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~--~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP--EYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH--HHhccC
Confidence 688988766422 4567888899988776421 1122 5899999998542 222222
Q ss_pred CCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 58 ~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 356789999999999999999999999975
No 112
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.46 E-value=1.6e-06 Score=69.49 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=63.7
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC------------------CCCC--CcCEEEEcCCchhHHHHHHh
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l~--~~d~iil~GG~~~~~~~l~~ 56 (259)
+||+|+.++|. +..+.+.|+..|+++.+++.. ++.. ++|+||+|||.... ..+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~-~~~~~ 80 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA-FALAP 80 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH-HHHcc
Confidence 58999988774 334678889999998887531 1122 58999999985432 11222
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+..+.++|+++.++++|+.+||.|..+|+.+
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 2457899999999999999999999999986
No 113
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.40 E-value=1.5e-06 Score=67.63 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=52.9
Q ss_pred EEEEEecCCChHH----HHHHHHhCCCeEEEeCCC----CCC-CCcCEEEEcCCc-hhHHHHHHhhCCHHHHHHHHHHcC
Q 024993 2 VVGVLALQGSFNE----HIAALKRLGVKGVEIRKP----DQL-QNVSSLIIPGGE-STTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 2 ki~vl~~~G~~~~----~~~~L~~~G~~v~~~~~~----~~l-~~~d~iil~GG~-~~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
+|+|-+-.|.... +.+.|+..- .+..++.. ..+ .++|.||+|||. ...+..|.. .+ .+.|++++++|
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~I~~~~~~~~ad~lVlPGGa~~~~~~~L~~-~g-~~~i~~~v~~g 77 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADELAVGPWESKTALLVVPGGADLPYCRALNG-KG-NRRIRNFVRNG 77 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHHHhcCchhhCCCEEEECCCChHHHHHHHHh-hC-cHHHHHHHHCC
Confidence 3566665564443 333444322 34444321 223 389999999984 556777765 35 78999999999
Q ss_pred CcEEEEchhHHHH
Q 024993 72 KPVWGTCAGLIFL 84 (259)
Q Consensus 72 ~PiLGIC~G~QlL 84 (259)
+|+||||+|..+-
T Consensus 78 ~p~LGIClGAy~a 90 (114)
T cd03144 78 GNYLGICAGAYLA 90 (114)
T ss_pred CcEEEEecCccce
Confidence 9999999999875
No 114
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.38 E-value=2.3e-06 Score=63.03 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=57.1
Q ss_pred EEEecCCCh----HHHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 024993 4 GVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 4 ~vl~~~G~~----~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
+|+...+.. ....+.|+..++++.+++... ...++|++|+|||........ ......+.+++..++++
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~-~~~~~~~~i~~~~~~~~ 80 (115)
T cd01653 2 AVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-RDEALLALLREAAAAGK 80 (115)
T ss_pred EEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc-cCHHHHHHHHHHHHcCC
Confidence 455544443 467789999999999886532 256899999999854321110 11234678888888899
Q ss_pred cEEEEchhHHHH
Q 024993 73 PVWGTCAGLIFL 84 (259)
Q Consensus 73 PiLGIC~G~QlL 84 (259)
|++++|.|+|++
T Consensus 81 ~i~~~c~g~~~l 92 (115)
T cd01653 81 PILGICLGAQLL 92 (115)
T ss_pred EEEEECchhHhH
Confidence 999999999999
No 115
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.36 E-value=2.4e-06 Score=71.79 Aligned_cols=86 Identities=27% Similarity=0.419 Sum_probs=63.2
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC---------------------CCC--CCcCEEEEcCC-chhHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP---------------------DQL--QNVSSLIIPGG-ESTTMA 52 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~---------------------~~l--~~~d~iil~GG-~~~~~~ 52 (259)
|||+|+...|. +....+.|++.|.++.+.... +++ ++||+|++||| .....
T Consensus 3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~- 81 (188)
T COG0693 3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY- 81 (188)
T ss_pred ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh-
Confidence 57999988774 345678999999977764311 123 38999999999 43321
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+.....+.++++++.+.++||.+||.|.++|+.+-
T Consensus 82 -~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 82 -LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred -ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 11113467999999999999999999999999764
No 116
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.33 E-value=2.7e-06 Score=69.76 Aligned_cols=84 Identities=26% Similarity=0.445 Sum_probs=60.7
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC-C-------------------CC--CCcCEEEEcCCchhHHHHHH
Q 024993 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-D-------------------QL--QNVSSLIIPGGESTTMARLA 55 (259)
Q Consensus 2 ki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-~-------------------~l--~~~d~iil~GG~~~~~~~l~ 55 (259)
||+|+..+|- +....+.|++.|+++.+++.. . +. .++|+|++|||... ..+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~--~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP--DKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh--hhhc
Confidence 6888887663 224567788899988886432 1 11 25799999999632 1222
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+..+.++|+++.++++++.+||.|.++|+++
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 22346789999999999999999999999975
No 117
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.32 E-value=3.5e-06 Score=70.36 Aligned_cols=84 Identities=24% Similarity=0.357 Sum_probs=60.1
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC----------------------------------CCCC--CcCEE
Q 024993 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP----------------------------------DQLQ--NVSSL 41 (259)
Q Consensus 2 ki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~----------------------------------~~l~--~~d~i 41 (259)
||+|+..+|. +....+.|++.|+++.+++.. +++. ++|+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 6888877664 224567888899888876421 0112 57999
Q ss_pred EEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 42 il~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
++|||.... .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 81 iv~GG~~~~--~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 81 VIPGGRAPE--YLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred EEcCCCChh--hhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 999986321 12122346789999999999999999999999986
No 118
>PRK04155 chaperone protein HchA; Provisional
Probab=98.26 E-value=8.1e-06 Score=73.50 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=41.3
Q ss_pred CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 36 ~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
++||+|++|||.... ..+..+..+.++|+.+.++++||.+||.|.++|..+
T Consensus 146 ~dYDaV~iPGG~g~~-~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGAL-IGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchH-HHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 589999999996432 345554567899999999999999999999987764
No 119
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.21 E-value=4.8e-06 Score=72.77 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=41.0
Q ss_pred CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 36 ~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
++||+|++|||.... .++..+..+.+.|+++.++++|+.+||.|.++|+.+
T Consensus 93 ~dYDav~iPGG~g~~-~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTL-FDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 479999999996432 233333457789999999999999999999999986
No 120
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.17 E-value=6.1e-06 Score=57.99 Aligned_cols=71 Identities=31% Similarity=0.467 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHH
Q 024993 13 NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84 (259)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL 84 (259)
....+.+++.++.+.++.... ...++|++|+|||........ +.....+.++++.++++|++|+|.|.|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 467788999999888876432 256899999999864331110 11234677888888899999999999864
No 121
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.16 E-value=1.9e-05 Score=66.82 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=59.4
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCC------C-----------C----CC--CCcCEEEEcCCchhHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK------P-----------D----QL--QNVSSLIIPGGESTTMAR 53 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~------~-----------~----~l--~~~d~iil~GG~~~~~~~ 53 (259)
|||+|+..+|- +....+.|++.|+++.+.+. + + ++ +++|.|++|||.... ..
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~-~~ 81 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA-EC 81 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh-hh
Confidence 58999987663 33466788888887776431 0 1 12 368999999985321 11
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHH
Q 024993 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~ 86 (259)
+..+..+.++|+++.++++++.+||.|..+|..
T Consensus 82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 222224678999999999999999999997554
No 122
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.14 E-value=1e-05 Score=69.75 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCeEEEeCCC---------------------------------C---C--CCCcCEEEEcCCchh--HHHH
Q 024993 14 EHIAALKRLGVKGVEIRKP---------------------------------D---Q--LQNVSSLIIPGGEST--TMAR 53 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~---------------------------------~---~--l~~~d~iil~GG~~~--~~~~ 53 (259)
...+.|++.|+++++.++. . + +++||+|++|||... .+.+
T Consensus 21 ~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D 100 (213)
T cd03133 21 LTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSD 100 (213)
T ss_pred HHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhh
Confidence 4567899999999886531 0 1 236999999999642 1211
Q ss_pred H-------HhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 54 L-------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 54 l-------~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+ +.+..+.+.++++.++++|+.+||.|.++|+.+.
T Consensus 101 ~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 101 FAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred hcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 1 1123467899999999999999999999999875
No 123
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.11 E-value=2.1e-05 Score=64.06 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=60.0
Q ss_pred EEEEecCCC----hHHHHHHHHhCCCeEEEeCCC-------------------CCC--CCcCEEEEcCCchhHHHHHHhh
Q 024993 3 VGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (259)
Q Consensus 3 i~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~l~~~ 57 (259)
|+|+.++|- +....+.|+..|+++.+++.. ++. .++|.||+|||.... ..+..+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~-~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA-QNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH-HHHHhC
Confidence 467766653 234567888899888775421 122 479999999986211 122223
Q ss_pred CCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 58 ~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+.++|+++.++++++.+||.|..+|+++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 457899999999999999999999999986
No 124
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.09 E-value=5.9e-05 Score=67.89 Aligned_cols=180 Identities=18% Similarity=0.125 Sum_probs=84.6
Q ss_pred CEEEEEecCCChHHHH-HHHHhCC-----CeEEEeCCC-------------------CCC--CCcCEEEEcCCchhHH--
Q 024993 1 MVVGVLALQGSFNEHI-AALKRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTM-- 51 (259)
Q Consensus 1 mki~vl~~~G~~~~~~-~~L~~~G-----~~v~~~~~~-------------------~~l--~~~d~iil~GG~~~~~-- 51 (259)
+||+||++=-+..... +.++.++ ++++.+... +++ ..+||+|++|.+-+.+
T Consensus 35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F 114 (298)
T PF04204_consen 35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF 114 (298)
T ss_dssp EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence 5899998755555554 3445444 344444321 123 4799999999753221
Q ss_pred ---HHHHhhCCHHHHHHHHHHcCCcEEEEchhHHH-HHHhhccccC-CCcccccceeeeEEeeccCCcccccccccCCCc
Q 024993 52 ---ARLAEYHNLFPALREFVKMGKPVWGTCAGLIF-LANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA 126 (259)
Q Consensus 52 ---~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~Ql-L~~~~~~~~~-g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~ 126 (259)
++..+ +.+.+.-+.+.-.+.|.||.|+|. |.+.+|-... -..+..|+++.++.
T Consensus 115 e~V~YW~E---l~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~------------------- 172 (298)
T PF04204_consen 115 EEVDYWDE---LTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVL------------------- 172 (298)
T ss_dssp GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES-------------------
T ss_pred ccCCcHHH---HHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeecc-------------------
Confidence 12211 223332222356899999999998 5555531100 00111121111110
Q ss_pred ccccCCCCccceeeeecCcccccCCCCEEEEEeeecCCc-----ccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEE
Q 024993 127 LASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSN-----KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAF 201 (259)
Q Consensus 127 ~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~~-----~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQf 201 (259)
-..+|++.++++.+..=||-..... ....+.++|.++..+ ..+..-+.++-+=+|-
T Consensus 173 --------------~~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G-----~~l~~~~d~r~vfi~G 233 (298)
T PF04204_consen 173 --------------DPDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAG-----VFLVASKDGRQVFITG 233 (298)
T ss_dssp ---------------SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTE-----EEEEEECCCTEEEE-S
T ss_pred --------------CCCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcc-----eEEEEcCCCCEEEEeC
Confidence 0257899998877777677543221 112246888876531 2233334667788899
Q ss_pred CccCCCchHHHHHHHHHHHhc
Q 024993 202 HPELTADTRWHSYFLKMMSEV 222 (259)
Q Consensus 202 HPE~~~~~~i~~nfl~~~~~~ 222 (259)
|||...+ .+.+.+.+.+...
T Consensus 234 H~EYd~~-TL~~EY~RD~~~g 253 (298)
T PF04204_consen 234 HPEYDAD-TLAKEYRRDLAKG 253 (298)
T ss_dssp -TT--TT-HHHHHHHHHHHCT
T ss_pred CCccChh-HHHHHHHHHHhCC
Confidence 9999876 5666666555443
No 125
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=98.06 E-value=2.6e-05 Score=64.65 Aligned_cols=85 Identities=26% Similarity=0.351 Sum_probs=59.7
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEE--eCC----C-----------C----C--CCCcCEEEEcCCchhHHHHH
Q 024993 2 VVGVLALQGS----FNEHIAALKRLGVKGVE--IRK----P-----------D----Q--LQNVSSLIIPGGESTTMARL 54 (259)
Q Consensus 2 ki~vl~~~G~----~~~~~~~L~~~G~~v~~--~~~----~-----------~----~--l~~~d~iil~GG~~~~~~~l 54 (259)
||+|+-++|- +....+.|+..|.++.+ ++. + + + ..++|.|++|||.... ..+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~-~~~ 79 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGA-ENL 79 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHH-HHH
Confidence 7888887763 22456788888876654 431 1 0 1 3469999999985321 112
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+..+.++|+++.++++++.+||.|..+|+.+
T Consensus 80 ~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 80 RNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 222346789999999999999999999999986
No 126
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=98.06 E-value=4.5e-05 Score=65.39 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=71.5
Q ss_pred EEEEEecCC-----ChHHHHHHHHhCCCeEEEeCCC---------CCCCCcCEEEEcCCchh-HHHHHHhhCCHHHHHHH
Q 024993 2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKP---------DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALRE 66 (259)
Q Consensus 2 ki~vl~~~G-----~~~~~~~~L~~~G~~v~~~~~~---------~~l~~~d~iil~GG~~~-~~~~l~~~~~~~~~i~~ 66 (259)
||+++.... ....+.+++++.|++++.+... +.+.++|+|+++||... .+..++. ..+.+.|++
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~-t~~~~~i~~ 109 (210)
T cd03129 31 RVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRE-TPLLDAILK 109 (210)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHh-CChHHHHHH
Confidence 577776433 2334668899999977754321 13678999999999654 3445544 446677777
Q ss_pred HHHcCCcEEEEchhHHHHHHh-hcc-ccCC-----CcccccceeeeEE
Q 024993 67 FVKMGKPVWGTCAGLIFLANK-AVG-QKLG-----GQELVGGLDCTVH 107 (259)
Q Consensus 67 ~~~~g~PiLGIC~G~QlL~~~-~~~-~~~g-----~~~~lG~~~~~v~ 107 (259)
.+.+|+|+.|+|+|+.+++.. ... .+.+ ...+||+++..+.
T Consensus 110 ~~~~G~v~~G~SAGA~~~~~~~~~~~~~~~~~~~~~~~GLgl~~~~i~ 157 (210)
T cd03129 110 RVARGVVIGGTSAGAAVMGETGIGTTPSEPEVTPPMAPGLGLLPGIID 157 (210)
T ss_pred HHHcCCeEEEcCHHHHHhhhccccCCCCccccccccccCCCCcceeEC
Confidence 777899999999999999986 322 1111 3568888866554
No 127
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.99 E-value=2e-05 Score=68.85 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=40.4
Q ss_pred CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 36 ~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
++||+|++|||... +.++..+..+.+.++++.++|+|+.+||.|.++|..+
T Consensus 95 ~dYDav~iPGG~g~-~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGA-LIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCC-hhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 37999999999543 2334444457789999999999999999999987765
No 128
>PRK11249 katE hydroperoxidase II; Provisional
Probab=97.89 E-value=7e-05 Score=75.07 Aligned_cols=86 Identities=24% Similarity=0.206 Sum_probs=64.5
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC------------------CCC--CCcCEEEEcCCchhHHHHHHh
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~iil~GG~~~~~~~l~~ 56 (259)
|||+||...|. +..+.++|+..|+.+.++... +.. ..+|+|++|||.... ..+..
T Consensus 598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~-~~L~~ 676 (752)
T PRK11249 598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANI-ADLAD 676 (752)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhH-HHHhh
Confidence 68999988774 335678899999988887531 011 258999999985432 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+..+.++|+++.+.+++|.+||.|.++|+.+
T Consensus 677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 677 NGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 3346789999999999999999999999975
No 129
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.88 E-value=8.3e-05 Score=62.62 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=40.2
Q ss_pred CCCcCEEEEcCCchhHHH-HHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 35 LQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 35 l~~~d~iil~GG~~~~~~-~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+++|.|++|||...... .+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 457999999997432111 22223456789999999999999999999999985
No 130
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.88 E-value=4.6e-05 Score=63.71 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=56.6
Q ss_pred EEEEecCCC----hHHHHHHHHhCC-------CeEEEeCCC------------------CCCCCcCEEEEcCCchhHHHH
Q 024993 3 VGVLALQGS----FNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (259)
Q Consensus 3 i~vl~~~G~----~~~~~~~L~~~G-------~~v~~~~~~------------------~~l~~~d~iil~GG~~~~~~~ 53 (259)
|+|+.++|- +....+.|+..+ +++.+++.. ++..++|.|++|||.... .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~~~~--~ 78 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVD--G 78 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCceeecCCcEEEcCcCccccCCCCEEEECCCcccc--c
Confidence 456656553 334556676655 676665421 124579999999985422 1
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+..+..+.++|+++.++++++.+||.|.++|+++
T Consensus 79 ~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 79 RPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 1222346789999999999999999999999986
No 131
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.83 E-value=4.7e-05 Score=62.97 Aligned_cols=82 Identities=28% Similarity=0.375 Sum_probs=55.8
Q ss_pred EEEEecCCC----hHHHHHHHHhC-CCeEEEeCCC------------------CCC--CCcCEEEEcCCchhHHHHHHhh
Q 024993 3 VGVLALQGS----FNEHIAALKRL-GVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (259)
Q Consensus 3 i~vl~~~G~----~~~~~~~L~~~-G~~v~~~~~~------------------~~l--~~~d~iil~GG~~~~~~~l~~~ 57 (259)
|||+-.+|- +......|++. ++++.+++.. +++ .++|.|++|||...... .+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~---~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNP---EA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccC---Cc
Confidence 466755542 22345667765 6777765421 123 46899999999532111 11
Q ss_pred CCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 58 ~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+.++|+++.++++++.+||.|.++|+++
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 236789999999999999999999999986
No 132
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.78 E-value=2e-05 Score=63.69 Aligned_cols=52 Identities=33% Similarity=0.615 Sum_probs=39.1
Q ss_pred CCcCEEEEcCCchhHHHHHHhh-CCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 36 QNVSSLIIPGGESTTMARLAEY-HNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 36 ~~~d~iil~GG~~~~~~~l~~~-~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
.+||+||+|||.... ..++.+ ..+.++++++.++++|+.+||.|..+|+.+-
T Consensus 36 ~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~g 88 (147)
T PF01965_consen 36 SDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAAG 88 (147)
T ss_dssp GGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHTT
T ss_pred hhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhccC
Confidence 479999999997532 234311 3478999999999999999999999998763
No 133
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.69 E-value=0.0001 Score=61.29 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=57.6
Q ss_pred EEEEecCCC----hHHHHHHHHhCC-----CeEEEeCCC------------------CCCCCcCEEEEcCCchhHHHHHH
Q 024993 3 VGVLALQGS----FNEHIAALKRLG-----VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLA 55 (259)
Q Consensus 3 i~vl~~~G~----~~~~~~~L~~~G-----~~v~~~~~~------------------~~l~~~d~iil~GG~~~~~~~l~ 55 (259)
|+|+-++|- +....+.|+..+ +++.+++.. ++..++|+||+|||.... .+.
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~--~~~ 78 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTR--ALV 78 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchh--hhc
Confidence 456655552 334567777776 788776421 123479999999985322 122
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+..+.++|+++.++++++.+||.|..+|+.+
T Consensus 79 ~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 79 NDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred cCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 22346789999999999999999999999875
No 134
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.63 E-value=0.00013 Score=63.25 Aligned_cols=51 Identities=33% Similarity=0.505 Sum_probs=39.6
Q ss_pred CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 37 ~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
++|+|++|||.... ..+..+..+.++|+++.++++++.+||.|..+|+.+-
T Consensus 90 ~~dal~ipGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag 140 (221)
T cd03141 90 DYDAIFIPGGHGPM-FDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140 (221)
T ss_pred HceEEEECCCcccc-cccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence 78999999986321 1122223467999999999999999999999999864
No 135
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=97.59 E-value=0.00023 Score=59.49 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=39.5
Q ss_pred CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 35 l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..++|.||+|||.... +..+..+.++|+++.++++.+.+||.|..+|+.+
T Consensus 62 ~~~~D~liipgg~~~~---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLGAR---RAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCCcc---ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 3578999999985422 2222346789999999999999999999999975
No 136
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.48 E-value=0.0015 Score=58.69 Aligned_cols=144 Identities=14% Similarity=0.000 Sum_probs=74.8
Q ss_pred CCcCEEEEcCCchhHH-----HHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeec
Q 024993 36 QNVSSLIIPGGESTTM-----ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF 110 (259)
Q Consensus 36 ~~~d~iil~GG~~~~~-----~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~ 110 (259)
..+||+|++|.+-+.+ +...+ +.+.+.-.-+.-...|.||.|+|.-...+-+.. + ..
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~E---l~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~--K-----------~~-- 159 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEE---LTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIP--K-----------YT-- 159 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHH---HHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCC--c-----------cc--
Confidence 4799999999753221 12211 222232222356889999999998554442210 0 00
Q ss_pred cCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCEEEEEeeecCCc-----ccCCCcceeeeecccCCCCC
Q 024993 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSN-----KVLYSSSTVEIQEENAMPEK 185 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~~-----~~~~~~~lA~s~~~~~~~~~ 185 (259)
++-+.+|...... . ..+|++.++++.++.=||-+.... ....+.++|.++..+
T Consensus 160 -----------l~~KlfGVf~h~~-----~-~~~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G----- 217 (300)
T TIGR01001 160 -----------LPEKLSGVYKHDI-----A-PDSLLLRGFDDFFLAPHSRYADFDAEDIDKVTDLEILAESDEAG----- 217 (300)
T ss_pred -----------cCCceEEeecCcc-----C-CCCccccCCCCccccCCCCCCCCCHHHHhcCCCCeEEecCCCcc-----
Confidence 1111223211111 0 246888888777777677543221 112246777776431
Q ss_pred ceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHH
Q 024993 186 KVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 220 (259)
Q Consensus 186 ~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~ 220 (259)
..+..-..++-+=++=|||...+ .+.+...+.++
T Consensus 218 ~~l~~s~d~r~vfi~GH~EYd~~-TL~~EY~RD~~ 251 (300)
T TIGR01001 218 VYLAANKDERNIFVTGHPEYDAY-TLHQEYVRDIG 251 (300)
T ss_pred eEEEEcCCCCEEEEcCCCccChh-HHHHHHHHHHH
Confidence 12222234455558889999875 55555555444
No 137
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=97.47 E-value=0.00033 Score=57.13 Aligned_cols=93 Identities=22% Similarity=0.348 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCeEEEeCCCC--------CCCCcCEEEEcCCchh-HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHH
Q 024993 14 EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~--------~l~~~d~iil~GG~~~-~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL 84 (259)
...++|++.|+++..+...+ .+.++|+|++.||... .+..++. .++.+.|++++++|+++.|+.+|+.++
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~-t~l~~~i~~~~~~G~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKE-TGLDEAIREAYRKGGVIIGTSAGAMIL 82 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHH-TTHHHHHHHHHHTTSEEEEETHHHHCT
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHh-CCHHHHHHHHHHCCCEEEEEChHHhhc
Confidence 45689999999988875432 2468999999999654 3555654 688999999999999999999999998
Q ss_pred HHhhcccc-CC-----CcccccceeeeEE
Q 024993 85 ANKAVGQK-LG-----GQELVGGLDCTVH 107 (259)
Q Consensus 85 ~~~~~~~~-~g-----~~~~lG~~~~~v~ 107 (259)
+..+.... .. ...+||+++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~gLgl~~~~i~ 111 (154)
T PF03575_consen 83 GPSIETDSDSDDVELTNYDGLGLLPFVII 111 (154)
T ss_dssp SSBSCCGTTCCGCCECESB---SSSSEEE
T ss_pred cCceeecCcCCcccCCCCCcCCCCCCEeE
Confidence 76654321 11 1347777776654
No 138
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0033 Score=53.93 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=62.5
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCC---CeEEEeCC----CCCC-CCcCEEEEcCCchhHH-HHHHhhCCHHHHHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLG---VKGVEIRK----PDQL-QNVSSLIIPGGESTTM-ARLAEYHNLFPALREF 67 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G---~~v~~~~~----~~~l-~~~d~iil~GG~~~~~-~~l~~~~~~~~~i~~~ 67 (259)
|+|+|-.-.|. +...++.|+..- .++..+.. .+.. +...++|+|||.+..+ +.+.. -..+.|..+
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~EpW~~~T~lLV~pGGaDlpY~~~l~g--~g~a~i~~y 78 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKEPWEETTLLLVFPGGADLPYVQVLQG--LGTARIKNY 78 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeheeecCcchhceEEEEecCCCCchHHHHhcc--hhhhhHHHH
Confidence 88988876563 223445555432 23443332 1223 3567899999965332 22221 124678889
Q ss_pred HHcCCcEEEEchhHHHHHHhhccccCC-----CcccccceeeeEE
Q 024993 68 VKMGKPVWGTCAGLIFLANKAVGQKLG-----GQELVGGLDCTVH 107 (259)
Q Consensus 68 ~~~g~PiLGIC~G~QlL~~~~~~~~~g-----~~~~lG~~~~~v~ 107 (259)
+++|.-+||||+|...=+...+..++. +...|+++++++.
T Consensus 79 vk~GG~fLGiCAG~YFg~~~veF~~p~~~~vvgkRdL~fFpGT~~ 123 (253)
T COG4285 79 VKEGGNFLGICAGGYFGSAYVEFAEPTGIEVVGKRDLGFFPGTAR 123 (253)
T ss_pred HhcCCeEEEEeccccccceEEEEecCCCceeeecccccccCCccC
Confidence 999999999999988755554332221 2456777777664
No 139
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.37 E-value=0.00019 Score=60.03 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=34.5
Q ss_pred CCcCEEEEcCCchhHH-----HHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhcc
Q 024993 36 QNVSSLIIPGGESTTM-----ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (259)
Q Consensus 36 ~~~d~iil~GG~~~~~-----~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~ 90 (259)
.++||+|++|.+-+.+ .+..+-..+.++.+ ++..|+|+||.|+|+...++++
T Consensus 61 ~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~---~~v~stl~iCWgaqaal~~~yG 117 (175)
T cd03131 61 AKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAK---THVTSTLFSCWAAMAALYYFYG 117 (175)
T ss_pred cCCCEEEEeCCCcccCCccccchHHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHcC
Confidence 5799999999853211 11211112334444 4689999999999998888853
No 140
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.0024 Score=64.46 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=57.1
Q ss_pred EEEEEecCCC--hHHHHHHHHhCCCeEEEeCCC------CCCCCcCEEEEcCCchhH------HHHHH---hhCCHHHHH
Q 024993 2 VVGVLALQGS--FNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT------MARLA---EYHNLFPAL 64 (259)
Q Consensus 2 ki~vl~~~G~--~~~~~~~L~~~G~~v~~~~~~------~~l~~~d~iil~GG~~~~------~~~l~---~~~~~~~~i 64 (259)
|||||...|. ..++..++..+|++..-++-. ..++++-+|+++||+++. ..|-. -+..++...
T Consensus 1060 kVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF 1139 (1320)
T KOG1907|consen 1060 KVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQF 1139 (1320)
T ss_pred ceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHH
Confidence 7999998875 446777889999865544322 246789999999997643 11211 112334444
Q ss_pred HHHHH-cCCcEEEEchhHHHHHHh
Q 024993 65 REFVK-MGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 65 ~~~~~-~g~PiLGIC~G~QlL~~~ 87 (259)
.+|.. .+.--||||.|-|+|+..
T Consensus 1140 ~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1140 EAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred HHHhcCCCceeeecccHhHHHHHh
Confidence 44443 456789999999999974
No 141
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=97.27 E-value=0.0012 Score=56.95 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=49.5
Q ss_pred HHHHHhCCCeEEEeCCC---------------C----C--CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 16 IAALKRLGVKGVEIRKP---------------D----Q--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 16 ~~~L~~~G~~v~~~~~~---------------~----~--l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
.+.|++.|++|++.... + + -+.||.||||||.+-. +.|.....+.++++++.+.|+++
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~-e~L~~~~~v~~lvK~q~~~gkLI 103 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGA-ETLSECEKVVDLVKEQAESGKLI 103 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhh-hhhhhcHHHHHHHHHHHhcCCeE
Confidence 67899999999987531 0 1 1579999999994321 22333234568899999999999
Q ss_pred EEEchhHHHHH
Q 024993 75 WGTCAGLIFLA 85 (259)
Q Consensus 75 LGIC~G~QlL~ 85 (259)
.+||.|.-++.
T Consensus 104 aaICaap~~al 114 (247)
T KOG2764|consen 104 AAICAAPLTAL 114 (247)
T ss_pred EEeecchHHHH
Confidence 99999984433
No 142
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=97.14 E-value=0.00065 Score=55.67 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=38.6
Q ss_pred CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 34 ~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+..++|.||+|||.... ....+..+.++|++..++++++.+||.|..+|+++
T Consensus 58 ~~~~~D~lvvpg~~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGFD--AAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSCCSEEEEE-STTHH--HHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hcccCCEEEeCCCCCch--hcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 34679999999987611 11111235788888888999999999999999987
No 143
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.10 E-value=0.0024 Score=58.10 Aligned_cols=50 Identities=26% Similarity=0.443 Sum_probs=39.0
Q ss_pred CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 35 l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+++|.||+|||...... .+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 73 ~~~~D~livpGg~~~~~~---~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAP---VPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred cCCCCEEEECCCCccccc---CCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 468999999998532111 12346789999999999999999999999976
No 144
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=96.83 E-value=0.0073 Score=52.16 Aligned_cols=86 Identities=21% Similarity=0.319 Sum_probs=62.0
Q ss_pred EEEEEecCCC-----hHHHHHHHHhCCCe-EEEeCCC-----------CCCCCcCEEEEcCCchhH-HHHHHhhCCHHHH
Q 024993 2 VVGVLALQGS-----FNEHIAALKRLGVK-GVEIRKP-----------DQLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~~~G~-----~~~~~~~L~~~G~~-v~~~~~~-----------~~l~~~d~iil~GG~~~~-~~~l~~~~~~~~~ 63 (259)
||+++...+. ...+.+++++.|++ +.++... +.+.++|+|++.||.... ++.++. ..+.+.
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~-t~l~~~ 109 (217)
T cd03145 31 RIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGG-TPLLDA 109 (217)
T ss_pred cEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcC-ChHHHH
Confidence 5778865431 33466788889984 4444221 125689999999996543 444543 567888
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
|++.+++|.|+.|+.+|..+++..+
T Consensus 110 l~~~~~~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred HHHHHHcCCEEEEccHHHHhhhhcc
Confidence 9999999999999999999999864
No 145
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=96.77 E-value=0.01 Score=52.54 Aligned_cols=105 Identities=21% Similarity=0.243 Sum_probs=70.1
Q ss_pred EEEEEecC-CChH----HHHHHHHhCCCe-EEEeCC--C---------CCCCCcCEEEEcCCchhH-HHHHHhhCCHHHH
Q 024993 2 VVGVLALQ-GSFN----EHIAALKRLGVK-GVEIRK--P---------DQLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~~~-G~~~----~~~~~L~~~G~~-v~~~~~--~---------~~l~~~d~iil~GG~~~~-~~~l~~~~~~~~~ 63 (259)
||+||-.. +... .+.++|+++|++ +.++.. . +.+.++|+|++.||.... .+.++ ...+.+.
T Consensus 30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~-~t~l~~~ 108 (250)
T TIGR02069 30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLG-DTPLLDR 108 (250)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHc-CCcHHHH
Confidence 67888643 2222 345678899984 554432 1 125689999999996533 34454 3677889
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHhhccc---c--C--C---CcccccceeeeEE
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANKAVGQ---K--L--G---GQELVGGLDCTVH 107 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~~~~~---~--~--g---~~~~lG~~~~~v~ 107 (259)
|++++++|.|+.|+.+|+.+|+..+... + + + -..+||+++..+.
T Consensus 109 l~~~~~~G~vi~G~SAGA~i~~~~~~~~g~~~~~p~~~~~~~~~GLgll~~~vi 162 (250)
T TIGR02069 109 LRKRVHEGIILGGTSAGAAVMSDTMIVGGDSEESPRKETVDMAPGLGLLPNVLI 162 (250)
T ss_pred HHHHHHcCCeEEEccHHHHhcccceEecCCCcCCccccceecccCccccCCcee
Confidence 9999999999999999999998766321 0 0 1 1246777776543
No 146
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=95.99 E-value=0.024 Score=48.69 Aligned_cols=74 Identities=28% Similarity=0.391 Sum_probs=56.3
Q ss_pred HHHHHHhCCCeEEEeCC---C-C----CCCCcCEEEEcCCch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHH
Q 024993 15 HIAALKRLGVKGVEIRK---P-D----QLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~---~-~----~l~~~d~iil~GG~~-~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~ 85 (259)
..++|+..|++++-++- + + .+.+.|.|++.||.- ..+..+++ .++.+.|++.+++|+|+.|+.+|.-+-+
T Consensus 54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke-~gld~iIr~~vk~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKE-TGLDDIIRERVKAGTPYIGWSAGANIAG 132 (224)
T ss_pred HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHH-hCcHHHHHHHHHcCCceEEeccCceeec
Confidence 45688899998876542 2 2 245699999999954 23444544 6889999999999999999999998877
Q ss_pred Hhhc
Q 024993 86 NKAV 89 (259)
Q Consensus 86 ~~~~ 89 (259)
..+.
T Consensus 133 p~I~ 136 (224)
T COG3340 133 PTIE 136 (224)
T ss_pred Ccee
Confidence 7664
No 147
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=95.84 E-value=0.02 Score=41.64 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=36.5
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG 46 (259)
||||= .++.++.++|+..|++|+.+....++..+|++|++|-
T Consensus 3 kIAVE---~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~ 44 (80)
T PF03698_consen 3 KIAVE---EGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQ 44 (80)
T ss_pred eEEec---CCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECC
Confidence 37764 5688999999999999999988878899999999994
No 148
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.25 E-value=0.13 Score=42.48 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=41.4
Q ss_pred CCcCEEEEcCCchhH--HHHH-------HhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhcc
Q 024993 36 QNVSSLIIPGGESTT--MARL-------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (259)
Q Consensus 36 ~~~d~iil~GG~~~~--~~~l-------~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~ 90 (259)
+.+|++|+|||+..+ +.+. +-++++..+.+.+.++|+|+--||....++.+.++.
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~ 147 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF 147 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC
Confidence 368999999997532 1111 112456778888889999999999999999998864
No 149
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.70 E-value=0.2 Score=45.40 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=48.1
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEeCC-------------------C-CCC-CCcCEEEEcCCchhHHHH
Q 024993 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-------------------P-DQL-QNVSSLIIPGGESTTMAR 53 (259)
Q Consensus 1 mki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~-------------------~-~~l-~~~d~iil~GG~~~~~~~ 53 (259)
|||+|+...+. ...+.++|++.|+++.+... . +++ +.+|.+|.-||..+.+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L-- 78 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFL-- 78 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHH--
Confidence 99999976654 22456678889998877431 0 122 2589999999866543
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 54 LAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
...+.+...++|+|||=.|.
T Consensus 79 --------~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 79 --------RTATYVGNSNIPILGINTGR 98 (292)
T ss_pred --------HHHHHhcCCCCCEEEEecCC
Confidence 23344444689999999886
No 150
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=94.52 E-value=0.23 Score=43.87 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=34.6
Q ss_pred cCcccccCCCCEEEEEeeecCCcc-----cCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCc
Q 024993 143 RAPAVLDVGPDVDVLADYPVPSNK-----VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD 208 (259)
Q Consensus 143 ~~pl~~~~~~~~~~~Hs~~~~~~~-----~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~ 208 (259)
.++++.|+.+.++.=||-+.+... ...+++++.|+..+ .++.+-+.++-+=+--|||...+
T Consensus 176 ~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G-----~~l~a~k~~r~ifv~gH~EYD~~ 241 (307)
T COG1897 176 HSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAG-----VYLLASKDGRNIFVTGHPEYDAT 241 (307)
T ss_pred cchhhccCCccccCcccccccCCHHHHhhCCCceeeecccccc-----eEEEecCCCCeEEEeCCcchhhh
Confidence 346677777777766775543221 12347788776531 23333344554455569998765
No 151
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.45 E-value=0.23 Score=44.57 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=48.1
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEeCC-----C-------CCC--CCcCEEEEcCCchhHHHHHHhhCCH
Q 024993 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P-------DQL--QNVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 1 mki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~-----~-------~~l--~~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
|||+|+...+. ...+.++|++.|+++.+... . ..+ .++|.+|.-||..+.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL--------- 71 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTIL--------- 71 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHH---------
Confidence 99999987765 22456788889998887521 0 011 2689999999866543
Q ss_pred HHHHHHHHHcCCcEEEEchhH
Q 024993 61 FPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+.++ ....++|++||=.|.
T Consensus 72 -~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 72 -RIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -HHHH-hcCCCCeEEEEeCCC
Confidence 2333 334589999999886
No 152
>PRK03094 hypothetical protein; Provisional
Probab=94.25 E-value=0.14 Score=37.19 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=35.1
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCC
Q 024993 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (259)
Q Consensus 3 i~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG 46 (259)
|||= -++.++.++|++.|++|+-++...+...+|++|++|-
T Consensus 4 IaVE---~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~ 44 (80)
T PRK03094 4 IGVE---QSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ 44 (80)
T ss_pred EEee---cCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence 7765 4588899999999999999887767788999999993
No 153
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=94.06 E-value=0.11 Score=47.83 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=35.7
Q ss_pred CCcCEEEEcCCch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 36 QNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 36 ~~~d~iil~GG~~-~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+|.++.++|.. ...... ..+..+|++..+.|.++.|||.|.-+|+.+
T Consensus 75 ~~~~~v~v~~g~~~~~~~~~---~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 75 PPIDILPVCGGLGPERPVNA---PALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred CcceEEEEecCCCcccccch---HHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 4578888866532 111110 125789999999999999999999999986
No 154
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.64 E-value=0.61 Score=42.48 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=46.9
Q ss_pred CE-EEEEecCCC------hHHHHHHHHhCCCeEEEeCCC-----------------------CCC-CCcCEEEEcCCchh
Q 024993 1 MV-VGVLALQGS------FNEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGEST 49 (259)
Q Consensus 1 mk-i~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~-----------------------~~l-~~~d~iil~GG~~~ 49 (259)
|| |+|+...+. ...+.++|++.|+++.+.... .++ .++|.+|.-||..+
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT 80 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGT 80 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCcHH
Confidence 55 999977654 224566788899988764320 112 25799999998665
Q ss_pred HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 50 TMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 50 ~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
.+ ...+.+...++|+|||=.|.
T Consensus 81 lL----------~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 81 VL----------SAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred HH----------HHHHHhcCCCCcEEEEeCCC
Confidence 43 33344445689999998774
No 155
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.13 E-value=1.3 Score=39.98 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=46.4
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEeCCC-----------CCC-CCcCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKP-----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~-----------~~l-~~~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
|||+|+...+. ...+.++|++.|+++.+.... +++ .++|.+|.-||..+.+ ..
T Consensus 11 ~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L----------~a 80 (287)
T PRK14077 11 KKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLI----------SL 80 (287)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCHHHH----------HH
Confidence 35999976653 113456788889888774311 122 3589999988866543 33
Q ss_pred HHHHHHcCCcEEEEchhH
Q 024993 64 LREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~ 81 (259)
.+.+...++|+|||=.|.
T Consensus 81 a~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 81 CRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHHhcCCCCcEEEEeCCC
Confidence 344445689999999886
No 156
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.90 E-value=1.8 Score=39.20 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=46.2
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEeCCC-------------------CCCC-CcCEEEEcCCchhHHHHHH
Q 024993 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-------------------DQLQ-NVSSLIIPGGESTTMARLA 55 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~-------------------~~l~-~~d~iil~GG~~~~~~~l~ 55 (259)
||+|+...+. ...+.++|++.|+++.+.... +++. ++|.+|.-||..+.+.
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~--- 83 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLS--- 83 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHHH---
Confidence 5999976654 224566788899988774210 1222 5899999998665432
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 56 EYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
..+.+...++|+|||=.|.
T Consensus 84 -------aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 84 -------VAREIAPRAVPIIGINQGH 102 (296)
T ss_pred -------HHHHhcccCCCEEEEecCC
Confidence 2333434689999999886
No 157
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.68 E-value=1.7 Score=39.32 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=46.4
Q ss_pred EEEEEecCCCh------HHHHHHHHhCCCeEEEeCCC--------------CCC-CCcCEEEEcCCchhHHHHHHhhCCH
Q 024993 2 VVGVLALQGSF------NEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G~~------~~~~~~L~~~G~~v~~~~~~--------------~~l-~~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
+|+|+...+.- ..+.++|++.|+++.+.... +++ .++|.+|.-||..+.+.
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~-------- 78 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLG-------- 78 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHHH--------
Confidence 49999776542 24566788899888764310 122 25899999998765432
Q ss_pred HHHHHHHHHcCCcEEEEchhH
Q 024993 61 FPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~ 81 (259)
..+.+...++|+|||-.|.
T Consensus 79 --aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 79 --AARVLARYDIKVIGINRGN 97 (292)
T ss_pred --HHHHhcCCCCeEEEEECCC
Confidence 2333434579999999887
No 158
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.60 E-value=1.3 Score=39.54 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=41.9
Q ss_pred CEEEEEecCCChH------HHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHH--cCC
Q 024993 1 MVVGVLALQGSFN------EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGK 72 (259)
Q Consensus 1 mki~vl~~~G~~~------~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~--~g~ 72 (259)
|||+|+.. ..-. .+.++|+..|+++ . ..++|.+|.-||..+.+. .++.+.. .++
T Consensus 1 M~i~Ii~~-~~~~~~~~~~~l~~~l~~~g~~~---~----~~~~Dlvi~iGGDGT~L~----------a~~~~~~~~~~i 62 (265)
T PRK04885 1 MKVAIISN-GDPKSKRVASKLKKYLKDFGFIL---D----EKNPDIVISVGGDGTLLS----------AFHRYENQLDKV 62 (265)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHHHcCCcc---C----CcCCCEEEEECCcHHHHH----------HHHHhcccCCCC
Confidence 99999965 4311 2445677788762 1 146899999998665432 3334433 589
Q ss_pred cEEEEchhH
Q 024993 73 PVWGTCAGL 81 (259)
Q Consensus 73 PiLGIC~G~ 81 (259)
|++||=.|.
T Consensus 63 PilGIN~G~ 71 (265)
T PRK04885 63 RFVGVHTGH 71 (265)
T ss_pred eEEEEeCCC
Confidence 999998885
No 159
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=90.58 E-value=0.86 Score=38.95 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHHHH-hCCCeEEEeCCCC-----CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 16 IAALK-RLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 16 ~~~L~-~~G~~v~~~~~~~-----~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
.+.|+ ..++++++..+++ .|+++|.||+.......+.. ...+.|++++++|++++++..+.
T Consensus 25 ~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-----~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 25 AQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-----EQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-----HHHHHHHHHHHTT-EEEEEGGGG
T ss_pred HHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-----HHHHHHHHHHHcCCCEEEEcccc
Confidence 34556 5688888876532 56899999986533211111 12577889999999999999443
No 160
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=90.36 E-value=1.7 Score=39.31 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=46.6
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEeCCC--------------CCC-CCcCEEEEcCCchhHHHHHHhhCCH
Q 024993 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~--------------~~l-~~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
||+|+...+. ...+.++|++.|+++.+.... +++ ..+|.+|.-||....+
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l--------- 77 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTML--------- 77 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHH---------
Confidence 4899876654 234667888899887764310 122 2589999999866543
Q ss_pred HHHHHHHHHcCCcEEEEchhH
Q 024993 61 FPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+.++.+...++|+|||=.|.
T Consensus 78 -~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 78 -GIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred -HHHHHhcCCCCCEEEEcCCC
Confidence 33344444689999999886
No 161
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.24 E-value=1.8 Score=39.39 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=46.2
Q ss_pred EEEEEecCCCh------HHHHHHHHhCCCeEEEeCCC-----------------------CCC-CCcCEEEEcCCchhHH
Q 024993 2 VVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM 51 (259)
Q Consensus 2 ki~vl~~~G~~------~~~~~~L~~~G~~v~~~~~~-----------------------~~l-~~~d~iil~GG~~~~~ 51 (259)
||+|+...+.- ..+.++|++.|+++.+.... +.+ .++|.+|.-||..+.+
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L 86 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTIL 86 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHH
Confidence 49999776542 24566788899888764310 112 2579999999866543
Q ss_pred HHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 52 ~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
. ..+.+...++|+|||=.|.
T Consensus 87 ~----------aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 87 R----------AAELARAADVPVLGVNLGH 106 (306)
T ss_pred H----------HHHHhccCCCcEEEEecCC
Confidence 2 3334445689999998875
No 162
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.33 E-value=2 Score=42.50 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=47.3
Q ss_pred CEEEEEecCCC------hHHHHHHHHhCCCeEEEeCC-----C----------CCCCCcCEEEEcCCchhHHHHHHhhCC
Q 024993 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P----------DQLQNVSSLIIPGGESTTMARLAEYHN 59 (259)
Q Consensus 1 mki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~-----~----------~~l~~~d~iil~GG~~~~~~~l~~~~~ 59 (259)
|||+|+...+. ...+.++|++.|+++.+... . .++.++|.+|.-||..+.+
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L-------- 362 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVL-------- 362 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHH--------
Confidence 79999977554 22355678888988776421 0 1233679999999866543
Q ss_pred HHHHHHHHHHcCCcEEEEchhH
Q 024993 60 LFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 60 ~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
...+.+...++|||||=.|.
T Consensus 363 --~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 363 --RASKLVNGEEIPIICINMGT 382 (569)
T ss_pred --HHHHHhcCCCCCEEEEcCCC
Confidence 23344444689999998875
No 163
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.35 E-value=3.3 Score=37.63 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=45.7
Q ss_pred EEEEEecCCChH------HHHHHHHhCCCeEEEeCCC----------CCC-CCcCEEEEcCCchhHHHHHHhhCCHHHHH
Q 024993 2 VVGVLALQGSFN------EHIAALKRLGVKGVEIRKP----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (259)
Q Consensus 2 ki~vl~~~G~~~------~~~~~L~~~G~~v~~~~~~----------~~l-~~~d~iil~GG~~~~~~~l~~~~~~~~~i 64 (259)
||+++.+++.-. .+.++|++.|+++.+.... ... ..+|.+|.-||..+.+. .+
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~----------~~ 74 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLA----------AA 74 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHH----------HH
Confidence 488888776422 3456788889988775321 111 25899999998765532 23
Q ss_pred HHHHHcCCcEEEEch-hH
Q 024993 65 REFVKMGKPVWGTCA-GL 81 (259)
Q Consensus 65 ~~~~~~g~PiLGIC~-G~ 81 (259)
+.+...++|++||=. |.
T Consensus 75 ~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 75 RHLAPHDIPILSVNVGGH 92 (305)
T ss_pred HHhccCCCCEEEEecCCc
Confidence 333346899999987 53
No 164
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.07 E-value=3.1 Score=36.83 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=44.5
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCCCC-CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
||++|..-+..-. .+.+.|.+.|.++....... ...++|.+|.-||....+. .++.+ ++|++|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L~----------a~~~~---~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVLK----------AAKKV---GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHHHH----------HHHHc---CCCEEE
Confidence 9999996544322 34556777887666543222 2347899999998665432 22332 899999
Q ss_pred EchhH
Q 024993 77 TCAGL 81 (259)
Q Consensus 77 IC~G~ 81 (259)
|=.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 98885
No 165
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=87.98 E-value=1.9 Score=34.63 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
...++|.+.|+.+.+++...++.+|+.||+|.-.... + ...+.|++++++|.-+++
T Consensus 30 ~~~~~l~~~gi~~d~v~~~~~l~~y~~vi~P~~~~~~-~------~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 30 ALYRALRELGIPVDVVPPDADLSGYKLVVLPDLYLLS-D------ATAAALRAYVENGGTLVA 85 (154)
T ss_pred HHHHHHHHCCCCEEEECCCCCcccCCEEEECchhcCC-H------HHHHHHHHHHHCCCEEEE
Confidence 4567899999999999877788899999999853211 1 135778899988875554
No 166
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=87.56 E-value=1.1 Score=38.10 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
.+.++|+++|+.+.+++..+++++|..||+|.-.-.. + .+.+.|++++++|..++.-+
T Consensus 34 ~~y~al~~~gi~vDvv~~~~dL~~Ykllv~P~~~~l~-~------~~~~~L~~yV~~GG~li~~~ 91 (207)
T PF08532_consen 34 GWYRALRELGIPVDVVSPDDDLSGYKLLVLPSLYILS-P------EFAERLRAYVENGGTLILTP 91 (207)
T ss_dssp HHHHHHHTTT--EEEE-TTS--TT-SEEEES--SC---H------HH---HHHHHT-SS-EEE-T
T ss_pred HHHHHHHHcCCceEEecCcCCcccCcEEEEeeEEEEC-h------HHHHHHHHHHHCCCEEEEEc
Confidence 3567899999999999988899999999999853211 1 12466888888887666443
No 167
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=87.11 E-value=2.9 Score=34.54 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=49.6
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEeCCC----CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHH-
Q 024993 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRKP----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK- 69 (259)
Q Consensus 1 mki~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~~----~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~- 69 (259)
||++|+-. .|+=.. +...|++.|+++.+.+.. .++.+||.||+.-+-... ... +.+.+.+++..+
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~~--h~~--~~~~~Fv~k~~e~ 76 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRYG--HFH--EAVQSFVKKHAEA 76 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhhh--hhH--HHHHHHHHHHHHH
Confidence 89999953 354333 345678899999987542 257799999997763221 111 123455555554
Q ss_pred -cCCcEEEEchhHH
Q 024993 70 -MGKPVWGTCAGLI 82 (259)
Q Consensus 70 -~g~PiLGIC~G~Q 82 (259)
+.+|...+|.+.-
T Consensus 77 L~~kP~A~f~vnl~ 90 (175)
T COG4635 77 LSTKPSAFFSVNLT 90 (175)
T ss_pred HhcCCceEEEeehh
Confidence 5899988887653
No 168
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.32 E-value=5.4 Score=35.72 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=41.2
Q ss_pred CEEEEEecCCChH------HHHHHHHhCCCeEEEeCCC-----------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 1 MVVGVLALQGSFN------EHIAALKRLGVKGVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~~~------~~~~~L~~~G~~v~~~~~~-----------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
|||+|+...+.-. .+.++| ..|+++.+.... +++ ++|.+|.-||..+.+..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~a---------- 68 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGTILRT---------- 68 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHHHHHH----------
Confidence 9999997765422 344556 468877764321 112 68999999986654322
Q ss_pred HHHHHHcCCcEEEEchhH
Q 024993 64 LREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~ 81 (259)
.+. ...|+|||=.|.
T Consensus 69 ~~~---~~~PilGIN~G~ 83 (271)
T PRK01185 69 LQR---AKGPILGINMGG 83 (271)
T ss_pred HHH---cCCCEEEEECCC
Confidence 222 246999998873
No 169
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=85.92 E-value=3.8 Score=34.05 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=41.5
Q ss_pred CEEEEEec--CCChHHHHHHH----HhCCCeEEEeCCC----CCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHHHHHHH
Q 024993 1 MVVGVLAL--QGSFNEHIAAL----KRLGVKGVEIRKP----DQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFV 68 (259)
Q Consensus 1 mki~vl~~--~G~~~~~~~~L----~~~G~~v~~~~~~----~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~i~~~~ 68 (259)
||++|+-. .|+=..+.+++ .. |+++.++... .++.+||.||+.++. ...... +.+.+++..
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~------~~~fl~~~~ 73 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSA------LYKFVKKHA 73 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHH------HHHHHHHHH
Confidence 89999864 35544444444 33 6677765432 256789999987752 111111 122332221
Q ss_pred --HcCCcEEEEchh
Q 024993 69 --KMGKPVWGTCAG 80 (259)
Q Consensus 69 --~~g~PiLGIC~G 80 (259)
-.++|+.-+|.|
T Consensus 74 ~~l~~K~v~~F~v~ 87 (177)
T PRK11104 74 TQLNQMPSAFFSVN 87 (177)
T ss_pred HHhCCCeEEEEEec
Confidence 158898888877
No 170
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.18 E-value=3.8 Score=36.45 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=38.8
Q ss_pred CEEEEEecCCChH--HHHHHHHh----CCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSFN--EHIAALKR----LGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~~----~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
||.+|+.. ++-. ++.+.|++ .+. ..+++|.+|.-||..+.+ ..++.+...++|+
T Consensus 1 ~~~~i~~~-~~~~s~~~~~~l~~~~~~~~~---------~~~~~D~vi~iGGDGT~L----------~a~~~~~~~~iPi 60 (259)
T PRK00561 1 MKYKIFAS-TTPQTEPVLPKLKKVLKKKLA---------VEDGADYLFVLGGDGFFV----------STAANYNCAGCKV 60 (259)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHhhCCC---------ccCCCCEEEEECCcHHHH----------HHHHHhcCCCCcE
Confidence 99999975 4433 23333432 221 235689999999866543 3334444568999
Q ss_pred EEEchhH
Q 024993 75 WGTCAGL 81 (259)
Q Consensus 75 LGIC~G~ 81 (259)
+||=.|.
T Consensus 61 lGIN~G~ 67 (259)
T PRK00561 61 VGINTGH 67 (259)
T ss_pred EEEecCC
Confidence 9999885
No 171
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.06 E-value=5 Score=36.37 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=45.7
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEeCC-----C---------CCCC-CcCEEEEcCCchhHHHHHHhhCCH
Q 024993 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P---------DQLQ-NVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~-----~---------~~l~-~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
||+|+...+. ...+.++|++.|+++.+... + .++. .+|.+|.-||..+.+.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~-------- 77 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLG-------- 77 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHH--------
Confidence 5999976654 22455678888998877531 1 1122 5889999998665432
Q ss_pred HHHHHHHHHcCCcEEEEchhH
Q 024993 61 FPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~ 81 (259)
.++.+...++|+|||=.|.
T Consensus 78 --~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 78 --AARALARHNVPVLGINRGR 96 (295)
T ss_pred --HHHHhcCCCCCEEEEeCCc
Confidence 2233334689999998886
No 172
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.61 E-value=4.7 Score=38.73 Aligned_cols=30 Identities=27% Similarity=0.051 Sum_probs=26.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
|||+|+-+..+-.+..+.|.+.|+++.+.+
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSD 37 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence 789999987788899999999999998875
No 173
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=82.82 E-value=0.98 Score=39.84 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=61.8
Q ss_pred HHHHHHhCCC-eEEEe--CCCC---------CCCCcCEEEEcCCchhH-HHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 15 HIAALKRLGV-KGVEI--RKPD---------QLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 15 ~~~~L~~~G~-~v~~~--~~~~---------~l~~~d~iil~GG~~~~-~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+.+.++.+|+ ++.++ ++.+ .+.++++|++.||.... ..-++ +..+++.|++....|..+-|..+|.
T Consensus 72 y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~lk-dTpl~~~ir~r~r~G~avgGTSAGA 150 (293)
T COG4242 72 YIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGSLK-DTPLMAAIRQRVRRGIAVGGTSAGA 150 (293)
T ss_pred hhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeeecc-CCHHHHHHHHHHhcCceecccccch
Confidence 3456777776 44443 3322 24689999999995422 12222 3567889999999999999999999
Q ss_pred HHHHHhhccc-cCCC---------cccccceeeeEEe
Q 024993 82 IFLANKAVGQ-KLGG---------QELVGGLDCTVHR 108 (259)
Q Consensus 82 QlL~~~~~~~-~~g~---------~~~lG~~~~~v~~ 108 (259)
.+|...+... +.+. -.+||++++.+..
T Consensus 151 avM~~~mi~~g~s~~~pn~~~v~m~~glg~lp~~ivD 187 (293)
T COG4242 151 AVMSDHMIVAGDSGEYPNRELVDMGFGLGFLPGVIVD 187 (293)
T ss_pred hhcCCceEeccCCCCCCCcchhhhccccccccceeee
Confidence 9999876431 1011 3478888887764
No 174
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=82.81 E-value=2.2 Score=25.62 Aligned_cols=26 Identities=8% Similarity=0.314 Sum_probs=15.7
Q ss_pred CEEEEEecCCChH-----------HHHHHHHhCCCeE
Q 024993 1 MVVGVLALQGSFN-----------EHIAALKRLGVKG 26 (259)
Q Consensus 1 mki~vl~~~G~~~-----------~~~~~L~~~G~~v 26 (259)
|||||++...|.. .+.+.+.++|.+|
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~v 37 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNV 37 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCC
Confidence 9999998744321 2346778888776
No 175
>PLN02929 NADH kinase
Probab=80.22 E-value=6.6 Score=35.72 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCeEEEeCCC---CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 14 EHIAALKRLGVKGVEIRKP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~---~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
.+.++|++.|+++..+... +.+.++|.+|.-||..+.+. ..+.+ +.++|||||=.|.
T Consensus 38 ~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L~----------aa~~~-~~~iPvlGIN~Gp 97 (301)
T PLN02929 38 FCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLLQ----------ASHFL-DDSIPVLGVNSDP 97 (301)
T ss_pred HHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHHH----------HHHHc-CCCCcEEEEECCC
Confidence 3567889999988665322 24568999999998665432 22333 5689999999883
No 176
>PRK09271 flavodoxin; Provisional
Probab=79.25 E-value=19 Score=29.09 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=28.4
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEeCC--------CCCCCCcCEEEEcC
Q 024993 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK--------PDQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~--------~~~l~~~d~iil~G 45 (259)
|||+|+-. .||-.. +.+.|+..|+++.+... ..++.++|+|+++-
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 99999863 355333 34566778888876432 12345789988844
No 177
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=77.90 E-value=12 Score=31.89 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=47.1
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEe-CCC-----------------------CCCCCcCEEEEcCCc--hhHHHH
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEI-RKP-----------------------DQLQNVSSLIIPGGE--STTMAR 53 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~-~~~-----------------------~~l~~~d~iil~GG~--~~~~~~ 53 (259)
||||||-..|...+ +.+....+|.+|+-+ +++ +++...|+||..=|. +.....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~ 80 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDEL 80 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHH
Confidence 99999999998776 557777789888753 332 134567888873322 222111
Q ss_pred HHhhCCHHHHHHHHHH-cCCcEEEEchhHH
Q 024993 54 LAEYHNLFPALREFVK-MGKPVWGTCAGLI 82 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~-~g~PiLGIC~G~Q 82 (259)
.. ...+.|...++ ++.|-|=+-.|.-
T Consensus 81 ~~---k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 81 HS---KSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred HH---HHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 11 11334444444 4888777766654
No 178
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=75.70 E-value=7.7 Score=36.89 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=31.7
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEEe---CCC-C--------CCCCcCEEEEcCCc
Q 024993 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~-----G-----~~~~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~iil~GG~ 47 (259)
||++|+... | |-..+.++|++.|+++... .+. + .+.++|.||++||.
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGl 69 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGL 69 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999743 2 2224557889999987643 332 1 13579999999973
No 179
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=75.15 E-value=15 Score=35.04 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=47.5
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCC---------------------CCCCCcCEEEEcCCchhH---HHHHH
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGESTT---MARLA 55 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~iil~GG~~~~---~~~l~ 55 (259)
+||+|+-..++-.+ +.+.|.+.|++|...+.. +.+.++|.||.+-|.+.. ....+
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 46899988888788 689999999998876421 013468988886663321 22211
Q ss_pred h-hC---CHHHHHHHHHHcCCcEEEEchh
Q 024993 56 E-YH---NLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 56 ~-~~---~~~~~i~~~~~~g~PiLGIC~G 80 (259)
+ .. .-.+++.++. ...|+.||..-
T Consensus 88 ~~~i~i~~~~e~~~~~~-~~~~~I~ITGT 115 (461)
T PRK00421 88 ELGIPVVRRAEMLAELM-RFRTSIAVAGT 115 (461)
T ss_pred HCCCcEEeHHHHHHHHH-ccCcEEEEECC
Confidence 1 01 1123443333 24588888753
No 180
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=74.93 E-value=15 Score=29.89 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=30.5
Q ss_pred CEEEEEec-------------CC--ChHHHHHHHH----hCCCeEEEeCC-CC---------CCCCcCEEEE-cCCch
Q 024993 1 MVVGVLAL-------------QG--SFNEHIAALK----RLGVKGVEIRK-PD---------QLQNVSSLII-PGGES 48 (259)
Q Consensus 1 mki~vl~~-------------~G--~~~~~~~~L~----~~G~~v~~~~~-~~---------~l~~~d~iil-~GG~~ 48 (259)
|||+||+= +| ++.++.+.++ ..|++++.+.. .+ ..+++|+||+ ||++.
T Consensus 2 ~~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 79 (146)
T PRK13015 2 GKILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYT 79 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHh
Confidence 78999871 23 3555555554 45888888743 21 1246899888 88764
No 181
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=72.39 E-value=16 Score=32.50 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=31.2
Q ss_pred CEEEEEec-----CC-----ChHHHHHHHHhCCCeEEEeC---CC-CC--------CCCcCEEEEcCCc
Q 024993 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVKGVEIR---KP-DQ--------LQNVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~-----~G-----~~~~~~~~L~~~G~~v~~~~---~~-~~--------l~~~d~iil~GG~ 47 (259)
||++||.. .| |..-+.+.|.+.|+++..+. +. ++ .+++|.||++||-
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGL 70 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGL 70 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCc
Confidence 67888873 23 23346688899999776542 22 11 2579999999974
No 182
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.00 E-value=14 Score=33.17 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCeEEEeCCC--------------CCC-CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 13 NEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 13 ~~~~~~L~~~G~~v~~~~~~--------------~~l-~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
..+.++|++.|+++.+-... +++ .++|.+|.-||..+.+ ...+.+...++|+|||
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L----------~aa~~~~~~~~PilgI 72 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDGNML----------GRARVLAKYDIPLIGI 72 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcHHHH----------HHHHHhccCCCcEEEE
Confidence 34667899999988774321 122 2589999999866543 2333444468999999
Q ss_pred chh
Q 024993 78 CAG 80 (259)
Q Consensus 78 C~G 80 (259)
=.|
T Consensus 73 n~G 75 (272)
T PRK02231 73 NRG 75 (272)
T ss_pred eCC
Confidence 877
No 183
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=70.79 E-value=6.6 Score=31.65 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=29.7
Q ss_pred CEEEEEecC-------------CC--hHHHHHHH----HhCCCeEEEeCCC-C---------CCCCcCEEEE-cCCchh
Q 024993 1 MVVGVLALQ-------------GS--FNEHIAAL----KRLGVKGVEIRKP-D---------QLQNVSSLII-PGGEST 49 (259)
Q Consensus 1 mki~vl~~~-------------G~--~~~~~~~L----~~~G~~v~~~~~~-~---------~l~~~d~iil-~GG~~~ 49 (259)
|||+||+=+ |+ +.++.+.+ .+.|+++..+... + ...++|++|+ ||++..
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~th 79 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTH 79 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGH
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhcc
Confidence 899999722 22 33444444 4578888887433 2 2346999988 888753
No 184
>PRK03673 hypothetical protein; Provisional
Probab=70.23 E-value=11 Score=35.77 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=30.9
Q ss_pred CEEEEEecCC----------ChHHHHHHHHhCCCeEEEe---CCC-C--------CCCCcCEEEEcCCc
Q 024993 1 MVVGVLALQG----------SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G----------~~~~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~iil~GG~ 47 (259)
||++|+.... |-..+.+.|...|+++... .+. + .+.++|.||++||.
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGl 70 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGL 70 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCC
Confidence 7899997422 1223456788999987653 232 1 23579999999973
No 185
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=70.05 E-value=26 Score=26.60 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=41.4
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEEcC--CchhHHHHHHhhCCHHHHHHHHHH
Q 024993 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 2 ki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil~G--G~~~~~~~l~~~~~~~~~i~~~~~ 69 (259)
||.|+-..+++. .+...|...|..+..+.+.+ .+.+-|.+|+-. |.... +.+.++.+.+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~---------~~~~~~~a~~ 72 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDE---------LLNLLPHLKR 72 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHH---------HHHHHHHHHH
Confidence 466665544444 23345667788777764321 234557776644 33221 2355666677
Q ss_pred cCCcEEEEchh
Q 024993 70 MGKPVWGTCAG 80 (259)
Q Consensus 70 ~g~PiLGIC~G 80 (259)
+|.|+++|+..
T Consensus 73 ~g~~vi~iT~~ 83 (128)
T cd05014 73 RGAPIIAITGN 83 (128)
T ss_pred CCCeEEEEeCC
Confidence 89999999964
No 186
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=69.72 E-value=24 Score=31.01 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCCCeEEEeCC-CCCC-CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 12 FNEHIAALKRLGVKGVEIRK-PDQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~-~~~l-~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
+..+.+.|++. ++|..+.. ...+ +++|.+|+.|....-.+. -...|.+|+.+|.++|-
T Consensus 171 ~~~l~~~L~~~-y~V~~~~l~~~~IP~~~d~Lvi~~P~~~ls~~------e~~~l~~yl~~GG~ll~ 230 (271)
T PF09822_consen 171 YSSLKSLLEKN-YDVEELNLANEEIPDDADVLVIAGPKTDLSEE------ELYALDQYLMNGGKLLI 230 (271)
T ss_pred HHHHHHHHHhc-CceeecCCcccccCCCCCEEEEECCCCCCCHH------HHHHHHHHHHcCCeEEE
Confidence 34567888888 88888765 4456 689999998853311111 14678888888887543
No 187
>PRK03670 competence damage-inducible protein A; Provisional
Probab=69.58 E-value=13 Score=32.81 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=30.6
Q ss_pred CEEEEEecCC----------ChHHHHHHHHhCCCeEEEe---CCC-C-------C-CC-CcCEEEEcCCc
Q 024993 1 MVVGVLALQG----------SFNEHIAALKRLGVKGVEI---RKP-D-------Q-LQ-NVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G----------~~~~~~~~L~~~G~~v~~~---~~~-~-------~-l~-~~d~iil~GG~ 47 (259)
||++||...+ |...+.++|...|+++..+ .+. + . +. .+|.||++||.
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 8988887422 2234567899999987653 332 1 1 23 47999999974
No 188
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.04 E-value=27 Score=31.11 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=39.9
Q ss_pred EEEEEecCCC-----hHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHH-cCCcEE
Q 024993 2 VVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK-MGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~-~g~PiL 75 (259)
+|+|+..... ...+.++|++.|+++..- ..++|.+|.-||..+.+. .++.+.. ...|++
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~-----~~~~D~vi~lGGDGT~L~----------a~~~~~~~~~~pil 68 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH-----PKNANIIVSIGGDGTFLQ----------AVRKTGFREDCLYA 68 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC-----CCCccEEEEECCcHHHHH----------HHHHhcccCCCeEE
Confidence 4677755433 112445678889877642 246899999998665432 2333322 278999
Q ss_pred EEch-h
Q 024993 76 GTCA-G 80 (259)
Q Consensus 76 GIC~-G 80 (259)
||=. |
T Consensus 69 gIn~~G 74 (264)
T PRK03501 69 GISTKD 74 (264)
T ss_pred eEecCC
Confidence 9998 6
No 189
>PRK06703 flavodoxin; Provisional
Probab=67.48 E-value=22 Score=28.26 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=27.5
Q ss_pred CEEEEEecC--CChHHH----HHHHHhCCCeEEEeCCC----CCCCCcCEEEE
Q 024993 1 MVVGVLALQ--GSFNEH----IAALKRLGVKGVEIRKP----DQLQNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~--G~~~~~----~~~L~~~G~~v~~~~~~----~~l~~~d~iil 43 (259)
|||.|+-.. |+=..+ .+.|+..|+++.+.... .++.++|.|++
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEE
Confidence 788888643 443333 34566678887775432 35678999888
No 190
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=67.42 E-value=8.9 Score=34.32 Aligned_cols=70 Identities=26% Similarity=0.322 Sum_probs=43.4
Q ss_pred EEEEEecCCC------hHHHHHHHHhC-CCeEEEeCC-------------------------------CC--CCCCcCEE
Q 024993 2 VVGVLALQGS------FNEHIAALKRL-GVKGVEIRK-------------------------------PD--QLQNVSSL 41 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~~~-G~~v~~~~~-------------------------------~~--~l~~~d~i 41 (259)
||+|+.++.. ...+.++|++. +..+.+-.. .. ...++|.+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 7899988763 22567888888 655544210 00 12589999
Q ss_pred EEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 42 il~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
|.-||..+.+ ...+.+.+.++|+|||=.|.
T Consensus 81 i~lGGDGT~L----------~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 81 IVLGGDGTFL----------RAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp EEEESHHHHH----------HHHHHCTTST-EEEEEESSS
T ss_pred EEECCCHHHH----------HHHHHhccCCCcEEeecCCC
Confidence 9999866543 22333333589999998874
No 191
>PRK06756 flavodoxin; Provisional
Probab=66.50 E-value=22 Score=28.09 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=29.0
Q ss_pred CEEEEEecC--CChHHH----HHHHHhCCCeEEEeCCC-----CCCCCcCEEEEcC
Q 024993 1 MVVGVLALQ--GSFNEH----IAALKRLGVKGVEIRKP-----DQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~--G~~~~~----~~~L~~~G~~v~~~~~~-----~~l~~~d~iil~G 45 (259)
|||+|+-.. |+=..+ .+.|+..|+++.+.+.. .++.++|.|++.-
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gs 57 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGA 57 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEe
Confidence 789999643 443333 34566678888775421 2456899998853
No 192
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=66.29 E-value=33 Score=33.47 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=43.9
Q ss_pred EEEEEecCCC------hHHHHHHHH-hCCCeEEEeCC-------------------C-CC---C-CCcCEEEEcCCchhH
Q 024993 2 VVGVLALQGS------FNEHIAALK-RLGVKGVEIRK-------------------P-DQ---L-QNVSSLIIPGGESTT 50 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~-~~G~~v~~~~~-------------------~-~~---l-~~~d~iil~GG~~~~ 50 (259)
+|+|+...+. ...+.++|+ ..|+++.+-.. . .+ + .++|.+|.-||..+.
T Consensus 196 ~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDGTl 275 (508)
T PLN02935 196 TVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDGTV 275 (508)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcHHH
Confidence 5888876554 223556777 47887776321 0 11 2 258999999987655
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 51 MARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 51 ~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+. ..+.+....+|||||=.|.
T Consensus 276 L~----------Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 276 LW----------AASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred HH----------HHHHhccCCCcEEEEeCCC
Confidence 32 2334444679999998774
No 193
>PRK00549 competence damage-inducible protein A; Provisional
Probab=66.27 E-value=14 Score=35.09 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=31.4
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEEe---CCC-C--------CCCCcCEEEEcCCc
Q 024993 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~-----G-----~~~~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~iil~GG~ 47 (259)
||++||... | |...+.+.|.+.|+++... .+. + ...++|.||++||.
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGl 69 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGL 69 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCC
Confidence 899998742 2 1224567889999977653 332 1 13578999999973
No 194
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=64.27 E-value=25 Score=29.09 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCeEEEe---CCC-C--------CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
.+.++|++.|+++..+ .+. + .++++|.||.+||.....+++ ..+.++++. ++++.+.=--.
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~-----t~ea~~~~~--~~~l~~~~e~~ 95 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDL-----TREAVAKAF--GRPLVLDEEAL 95 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCCh-----HHHHHHHHh--CCCcccCHHHH
Confidence 4567889999977643 332 1 124789999999854322221 235565554 67777766666
Q ss_pred HHHHHhh
Q 024993 82 IFLANKA 88 (259)
Q Consensus 82 QlL~~~~ 88 (259)
+.|-..+
T Consensus 96 ~~i~~~~ 102 (170)
T cd00885 96 ERIEARF 102 (170)
T ss_pred HHHHHHH
Confidence 6666555
No 195
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=63.97 E-value=17 Score=32.47 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=29.7
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEE
Q 024993 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEIRKPD-------QLQNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~----------~~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil 43 (259)
|||+||- .|. -..+.++|++.|++++.+.... .+.++|.++.
T Consensus 1 ~~v~v~~-gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALLM-GGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEEe-CCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 9999994 441 2246789999999998886432 2346897765
No 196
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=63.97 E-value=13 Score=35.97 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=46.7
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEeCCC--CC-CCCcCEEEEcCCc----hhHHHHHHhhCCHHHHHHHHHHcC
Q 024993 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKP--DQ-LQNVSSLIIPGGE----STTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~--~~-l~~~d~iil~GG~----~~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
|||.|++.+-++. .+++.|...|+.+.++... .- +.+.+-|++++.. ...+.... .....++. ...+
T Consensus 386 frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~G--Ta~valvA--na~n 461 (556)
T KOG1467|consen 386 FRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVG--TACVALVA--NAFN 461 (556)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcc--hHHHHHHh--cccC
Confidence 6888998766555 5788999999988886533 21 2355666665531 12222211 11122222 2368
Q ss_pred CcEEEEchhHHH
Q 024993 72 KPVWGTCAGLIF 83 (259)
Q Consensus 72 ~PiLGIC~G~Ql 83 (259)
+|||..|--+-.
T Consensus 462 VPVlVCCE~yKF 473 (556)
T KOG1467|consen 462 VPVLVCCEAYKF 473 (556)
T ss_pred CCEEEEechhhh
Confidence 999999976643
No 197
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=63.77 E-value=24 Score=28.08 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=31.6
Q ss_pred CEEEEEecCCChHHH-HHHHHhCCC--eEEEeCCC-----------------------------CCCCCcCEEEEcCCc
Q 024993 1 MVVGVLALQGSFNEH-IAALKRLGV--KGVEIRKP-----------------------------DQLQNVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G~~~~~-~~~L~~~G~--~v~~~~~~-----------------------------~~l~~~d~iil~GG~ 47 (259)
|||+|+-..|+..+. ...|...+. ++..++.. +++.++|.||++.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 899999776777753 345554443 66655321 245789999999884
No 198
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=63.40 E-value=39 Score=27.41 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=30.3
Q ss_pred CEEEEEec-------------CC--ChHHHHHHH----HhCCCeEEEeCCC-C---------CCCCcCEEEE-cCCch
Q 024993 1 MVVGVLAL-------------QG--SFNEHIAAL----KRLGVKGVEIRKP-D---------QLQNVSSLII-PGGES 48 (259)
Q Consensus 1 mki~vl~~-------------~G--~~~~~~~~L----~~~G~~v~~~~~~-~---------~l~~~d~iil-~GG~~ 48 (259)
|||+||+= +| ++.++.+.+ ...|++++.+... + ...++|+||+ ||++.
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T 79 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT 79 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH
Confidence 78899872 12 344555554 3468888887432 1 2246899988 88864
No 199
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=62.76 E-value=22 Score=28.37 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCeEEEeC---CC-C--------CCCCcCEEEEcCCch
Q 024993 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~---~~-~--------~l~~~d~iil~GG~~ 48 (259)
.+...|++.|+++.... +. + .++++|.||.+||.+
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45678899999887542 22 1 124799999999854
No 200
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.48 E-value=42 Score=31.64 Aligned_cols=29 Identities=10% Similarity=-0.109 Sum_probs=25.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
|||+|+-+.++-.++.+.|+ .|++|.+.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEc
Confidence 89999998877779999999 999988865
No 201
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=62.37 E-value=43 Score=30.27 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=43.8
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCC--CeEEEeCCC-----------------CCC---CCcCEEEE--cCCchhHHHHH
Q 024993 1 MVVGVLALQG--SFNEHIAALKRLG--VKGVEIRKP-----------------DQL---QNVSSLII--PGGESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G--~~~~~~~~L~~~G--~~v~~~~~~-----------------~~l---~~~d~iil--~GG~~~~~~~l 54 (259)
.||||+.... .+.++.+.+++++ +++.+++.. +.. ..+|.||+ +||.-+++...
T Consensus 15 ~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~F 94 (319)
T PF02601_consen 15 KRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAF 94 (319)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhccc
Confidence 3799998643 3667777787665 455555431 011 25899888 55644333222
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEchhHH
Q 024993 55 AEYHNLFPALREFVKMGKPVWGTCAGLI 82 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiLGIC~G~Q 82 (259)
.. ....+...+...||+. .-||.
T Consensus 95 N~----e~varai~~~~~Pvis-aIGHe 117 (319)
T PF02601_consen 95 ND----EEVARAIAASPIPVIS-AIGHE 117 (319)
T ss_pred Ch----HHHHHHHHhCCCCEEE-ecCCC
Confidence 11 2455555567899764 33444
No 202
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.01 E-value=11 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCCCcCEEEEcCCchhHHHHHHhh-CCHHHHHHHHHHcCCcEEEEch
Q 024993 33 DQLQNVSSLIIPGGESTTMARLAEY-HNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 33 ~~l~~~d~iil~GG~~~~~~~l~~~-~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
+++..+|.+++-||.... .+... .+..+.+.+ ..++|+.|+|+
T Consensus 81 e~~n~aDvvVLlGGLaMP--~~gv~~d~~kel~ee--~~~kkliGvCf 124 (154)
T COG4090 81 EELNSADVVVLLGGLAMP--KIGVTPDDAKELLEE--LGNKKLIGVCF 124 (154)
T ss_pred cccccccEEEEEcccccC--cCCCCHHHHHHHHHh--cCCCceEEeeH
Confidence 456679999999984211 00000 011233332 14678999995
No 203
>PRK06444 prephenate dehydrogenase; Provisional
Probab=61.08 E-value=21 Score=30.31 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=30.6
Q ss_pred CEEEEEecCCChHHHH-HHHHhCCCeEEEeCCCCCCCCcCEEEEcCC
Q 024993 1 MVVGVLALQGSFNEHI-AALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~G~~~~~~-~~L~~~G~~v~~~~~~~~l~~~d~iil~GG 46 (259)
|||+|+--.|....+. +.|++.|+.|. +.++|.||++=-
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------~~~~DlVilavP 40 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------IKKADHAFLSVP 40 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------ECCCCEEEEeCC
Confidence 8999997667777655 67889999876 367899998653
No 204
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=60.06 E-value=34 Score=28.02 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=30.2
Q ss_pred CEEEEEecCC--------ChHHHHHHHHhCCCeEEEe---CCC-C-------C---CCCcCEEEEcCCch
Q 024993 1 MVVGVLALQG--------SFNEHIAALKRLGVKGVEI---RKP-D-------Q---LQNVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~G--------~~~~~~~~L~~~G~~v~~~---~~~-~-------~---l~~~d~iil~GG~~ 48 (259)
+||+|+...+ |-..+..+|++.|+++..+ .+. + + ..++|.||.+||.+
T Consensus 5 ~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 5 LRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred cEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 4677775422 2224556789999987754 332 1 1 23699999999853
No 205
>PRK01215 competence damage-inducible protein A; Provisional
Probab=60.06 E-value=33 Score=30.53 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=30.3
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHhCCCeEEEe---CCC-C--------CCCCcCEEEEcCCch
Q 024993 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~-----G-----~~~~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~iil~GG~~ 48 (259)
+|++|+... | |-..+.+.|.+.|+++... .+. + -+.++|.||.+||..
T Consensus 4 ~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 4 WFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred CEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 478888642 2 1224557789999987643 332 1 124689999999743
No 206
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=59.42 E-value=66 Score=28.49 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=44.3
Q ss_pred EEEEEecC--CC------hHHHHHHHHhCCCeEEEeCC--CC-------CC--CCcCEEEEcCCchhHHHHHHhhCCHHH
Q 024993 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PD-------QL--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (259)
Q Consensus 2 ki~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~-------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~ 62 (259)
|++|+.++ |+ +..+.+.|++.|.++.++.. .. .. ..+|.||+.||..+..+-
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v--------- 73 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEV--------- 73 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHH---------
Confidence 68888877 54 22456678888988776432 21 11 357899999986554221
Q ss_pred HHHHHHH-cCCcEEE-EchhHH-HHHHhhc
Q 024993 63 ALREFVK-MGKPVWG-TCAGLI-FLANKAV 89 (259)
Q Consensus 63 ~i~~~~~-~g~PiLG-IC~G~Q-lL~~~~~ 89 (259)
++...+ ...|.+| |=.|-- .+++.++
T Consensus 74 -~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~ 102 (293)
T TIGR00147 74 -VNALIQLDDIPALGILPLGTANDFARSLG 102 (293)
T ss_pred -HHHHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence 222222 3456677 544433 4566554
No 207
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=57.63 E-value=21 Score=31.91 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.3
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
||++||....+.. .+.++++++|+++..+..
T Consensus 1 m~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~ 34 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDP 34 (300)
T ss_pred CeEEEEecCCcchhHHHHHHHHHHcCCeEEEEeh
Confidence 9999998555433 577899999999988753
No 208
>PLN02727 NAD kinase
Probab=56.98 E-value=38 Score=35.60 Aligned_cols=71 Identities=20% Similarity=0.148 Sum_probs=44.7
Q ss_pred EEEEEecCCC-----hHHHHHHHHhC-CCeEEEeCCC---------------------CCC-CCcCEEEEcCCchhHHHH
Q 024993 2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIRKP---------------------DQL-QNVSSLIIPGGESTTMAR 53 (259)
Q Consensus 2 ki~vl~~~G~-----~~~~~~~L~~~-G~~v~~~~~~---------------------~~l-~~~d~iil~GG~~~~~~~ 53 (259)
+|+|+.-.+. ...+.++|... |+++.+-... +++ ..+|.+|.-||..+.+
T Consensus 680 tVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlL-- 757 (986)
T PLN02727 680 TVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVIL-- 757 (986)
T ss_pred EEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHH--
Confidence 5888875544 12356778776 8877653210 012 2589999999866543
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEchhHH
Q 024993 54 LAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PiLGIC~G~Q 82 (259)
...+.+....+|||||=+|.-
T Consensus 758 --------rAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 758 --------HASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred --------HHHHHhcCCCCCEEEEeCCCc
Confidence 233444456899999998853
No 209
>PRK06242 flavodoxin; Provisional
Probab=56.44 E-value=50 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=28.5
Q ss_pred CEEEEEecC---CChHHHHHHHH-hCCCeEEEeCC--CCCCCCcCEEEEcC
Q 024993 1 MVVGVLALQ---GSFNEHIAALK-RLGVKGVEIRK--PDQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~---G~~~~~~~~L~-~~G~~v~~~~~--~~~l~~~d~iil~G 45 (259)
||++|+-+. |+=..+.+.+. ..+.++.-+.. .+++.++|.||+..
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~i~~~~~~~~~~~d~ii~g~ 51 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAEVIDPGDVNPEDLSEYDLIGFGS 51 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcEEecHHHCCcccHhHCCEEEEeC
Confidence 899888753 45455666653 44655544332 24567899999865
No 210
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=56.04 E-value=67 Score=25.12 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=27.0
Q ss_pred CEEEEEec--CCChHHHH----HHHHhCCCeEE-EeCCC------CCCCCcCEEEEcC
Q 024993 1 MVVGVLAL--QGSFNEHI----AALKRLGVKGV-EIRKP------DQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~--~G~~~~~~----~~L~~~G~~v~-~~~~~------~~l~~~d~iil~G 45 (259)
||++|+-. .|+=..+. +.|...|+++. +.+.. .++.++|.||+..
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs 58 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGT 58 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEc
Confidence 89999863 35544443 44555687776 22211 2455789988855
No 211
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=55.52 E-value=61 Score=28.05 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=46.2
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCCC----CC-CcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHcCC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ----LQ-NVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~----l~-~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|||+|++-.-.... +..+|+..|+++....+.++ +. .+|.||+==+.+ +..+ +...||+......
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlviLD~~lP~~dG~~-------~~~~iR~~~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQPDLVLLDLMLPDLDGLE-------LCRRLRAKKGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCEEEEECCCCCCCHHH-------HHHHHHhhcCCCC
Confidence 89999975444444 45789999999999876421 11 199998822221 1111 2355554333568
Q ss_pred cEEEEchhH
Q 024993 73 PVWGTCAGL 81 (259)
Q Consensus 73 PiLGIC~G~ 81 (259)
||+-+.+--
T Consensus 74 PIi~Lta~~ 82 (229)
T COG0745 74 PIIVLTARD 82 (229)
T ss_pred cEEEEECCC
Confidence 899988653
No 212
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=55.37 E-value=42 Score=28.47 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=35.9
Q ss_pred CEEEEEecCC----------ChHHHHHHHHhCCCe---EE--EeCCC-C-------C-CC--CcCEEEEcCCchhHHHHH
Q 024993 1 MVVGVLALQG----------SFNEHIAALKRLGVK---GV--EIRKP-D-------Q-LQ--NVSSLIIPGGESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G----------~~~~~~~~L~~~G~~---v~--~~~~~-~-------~-l~--~~d~iil~GG~~~~~~~l 54 (259)
||++||...+ |-..+..+|++.|.+ +. ++++. + . ++ ++|.||.+||.+....+
T Consensus 4 ~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rD- 82 (193)
T PRK09417 4 LKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRD- 82 (193)
T ss_pred cEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCC-
Confidence 6788886432 122355778888643 32 33332 1 1 22 69999999985322111
Q ss_pred HhhCCHHHHHHHHHHcCCc
Q 024993 55 AEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~P 73 (259)
-..+.+++..+...|
T Consensus 83 ----vTpeAv~~l~~keip 97 (193)
T PRK09417 83 ----VTPEATLAVADKEMP 97 (193)
T ss_pred ----cHHHHHHHHhCCcCC
Confidence 123455555544444
No 213
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=55.09 E-value=34 Score=27.52 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCeEEEe---CCC-C--------CCC--CcCEEEEcCCch
Q 024993 14 EHIAALKRLGVKGVEI---RKP-D--------QLQ--NVSSLIIPGGES 48 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~--------~l~--~~d~iil~GG~~ 48 (259)
-+.++|++.|+++... ++. + .++ .+|.||.+||.+
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3557789999887654 332 1 123 699999999854
No 214
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=54.47 E-value=19 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=18.7
Q ss_pred CEEEEEecC--CChHH----HHHHHHh-CCCeEEEeC
Q 024993 1 MVVGVLALQ--GSFNE----HIAALKR-LGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~--G~~~~----~~~~L~~-~G~~v~~~~ 30 (259)
|||+|+... |+-.. +.+.+++ .|+++++++
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~ 38 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKR 38 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 589999643 33222 3345555 788888764
No 215
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=54.24 E-value=18 Score=31.96 Aligned_cols=38 Identities=24% Similarity=0.601 Sum_probs=27.7
Q ss_pred CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 34 ~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+++++|.+|.-||..+.+ ..++.+.+.++|+|||=.|.
T Consensus 22 ~~~~~Dlvi~iGGDGTlL----------~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDGFML----------QTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCHHHH----------HHHHHhcCCCCeEEEEeCCC
Confidence 445789999999866543 33445555689999998886
No 216
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=54.16 E-value=36 Score=28.64 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=18.2
Q ss_pred CEEEEEecC--CChHHHH----HHHHhC-CCeEEEeC
Q 024993 1 MVVGVLALQ--GSFNEHI----AALKRL-GVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~--G~~~~~~----~~L~~~-G~~v~~~~ 30 (259)
|||+|+-.. |+-..+. +.+++. |+++++++
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~ 37 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKR 37 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 799999642 3333333 345554 88888764
No 217
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=53.28 E-value=28 Score=31.71 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=45.9
Q ss_pred EEEEEecCCChH--HHHHHHHhCCCeEEEeCCCC---CCCCcCEEEEcC-CchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRKPD---QLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~---~l~~~d~iil~G-G~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
||.|....-.+. ...+.|++.|++++++.+.. -+++.|.++++. +.-.. ..+-...+...+...+.+.++|++
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~n-G~lvnkiGT~~lA~~A~e~~~Pf~ 225 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILAN-GALVNKIGTSPLALAARELRVPFY 225 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecC-CcEEeccchHHHHHHHHHhCCCEE
Confidence 455555433333 46789999999999887653 245788887765 31100 001001233333444556899999
Q ss_pred EEchhHH
Q 024993 76 GTCAGLI 82 (259)
Q Consensus 76 GIC~G~Q 82 (259)
..|--+=
T Consensus 226 v~aesyK 232 (301)
T COG1184 226 VVAESYK 232 (301)
T ss_pred EEeeeec
Confidence 9885443
No 218
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=53.26 E-value=67 Score=28.72 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=43.6
Q ss_pred CEEEEEecCCCh------HHHHHHHHhCCCeEEEeCCC-C-----------CCCCcCEEEEcCCchhHHHHHHhhCCHHH
Q 024993 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-D-----------QLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (259)
Q Consensus 1 mki~vl~~~G~~------~~~~~~L~~~G~~v~~~~~~-~-----------~l~~~d~iil~GG~~~~~~~l~~~~~~~~ 62 (259)
|+|+|+...+.- ..+..++...+.++.+.... + +.+.+|.++.-||....+ .
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL----------~ 70 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDGTLL----------R 70 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcHHHH----------H
Confidence 688888765542 23445666677766664321 0 114678888888755443 2
Q ss_pred HHHHHHHcCCcEEEEchhH
Q 024993 63 ALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 63 ~i~~~~~~g~PiLGIC~G~ 81 (259)
..+.+.+.++|++||=.|.
T Consensus 71 ~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 71 AARLLARLDIPVLGINLGH 89 (281)
T ss_pred HHHHhccCCCCEEEEeCCC
Confidence 3334444679999999993
No 219
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.85 E-value=67 Score=30.81 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=22.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-+.-+-.+..+.|.+.|+++.+..
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTL 38 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEc
Confidence 68888764356678889999999888765
No 220
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.61 E-value=60 Score=30.83 Aligned_cols=29 Identities=28% Similarity=0.197 Sum_probs=24.4
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||.|+-..++-.+..+.|.+.|++|...+
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D 39 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWD 39 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEC
Confidence 68899888777788899999999888765
No 221
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=52.37 E-value=92 Score=24.66 Aligned_cols=70 Identities=26% Similarity=0.393 Sum_probs=40.9
Q ss_pred CEEEEEecCCChHHHHHHHHhC---CC--eEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRL---GV--KGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~---G~--~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
++|||+.. ..+...++.+... |- .+..+....++.+||.++++.+...... +.++.. .+.|+|
T Consensus 28 ~~icv~g~-~~~~~~L~~l~~~~~~~~~i~v~~~~~~~~~~~C~ilyi~~~~~~~~~---------~i~~~~--~~~~vL 95 (145)
T PF13689_consen 28 FRICVLGD-DPFAEALSTLAGKQVGGRPIRVRRLSSPNEISGCHILYISSSESSQLP---------EILRKL--PGKPVL 95 (145)
T ss_pred eEEEEECC-hHHHHHHHHhhhcccCCCcEEEEECCCCcccccccEEEECCCChHHHH---------HHHHhc--CCCceE
Confidence 46888854 3344444444321 33 3444455567789999999887643322 222222 489999
Q ss_pred EEchhHH
Q 024993 76 GTCAGLI 82 (259)
Q Consensus 76 GIC~G~Q 82 (259)
-||-+-.
T Consensus 96 tIsd~~~ 102 (145)
T PF13689_consen 96 TISDGEG 102 (145)
T ss_pred EEECCCC
Confidence 9986644
No 222
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=52.32 E-value=41 Score=31.93 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=42.1
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCC---------------------CCCCCcCEEEEcCCchhH---HHHHHh
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGESTT---MARLAE 56 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~iil~GG~~~~---~~~l~~ 56 (259)
+|.++-..|+-.+ +.+.|.+.|++|...+.. +.+.++|.||.+-|.+.. ....++
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 3556666666665 777888888877765421 113468989886663321 111111
Q ss_pred -hC---CHHHHHHHHHHcCCcEEEEchh
Q 024993 57 -YH---NLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 57 -~~---~~~~~i~~~~~~g~PiLGIC~G 80 (259)
.. .-.+++.++.+ ..|+.||..-
T Consensus 81 ~~i~v~~~~el~~~~~~-~~~~IaITGT 107 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMR-FRHSIAVAGT 107 (448)
T ss_pred cCCceEeHHHHHHHHHh-cCcEEEEECC
Confidence 01 11344444432 4578888753
No 223
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.21 E-value=63 Score=30.55 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-..+.-.+..+.|.+.|+.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 68888765555667888888998877653
No 224
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.17 E-value=50 Score=31.89 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-...+-.+..+.|...|+++.+..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCD 42 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 57777654444556677888888777654
No 225
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.10 E-value=52 Score=31.39 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-..++-..+.+.|...|++|....
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEEC
Confidence 68888776555577788888888877754
No 226
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=50.06 E-value=31 Score=29.52 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCeEEEeCC-------C---CCCCCcCEEEEcC-Cchh------HHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 024993 14 EHIAALKRLGVKGVEIRK-------P---DQLQNVSSLIIPG-GEST------TMARLAEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~-------~---~~l~~~d~iil~G-G~~~------~~~~l~~~~~~~~~i~~~~~~g~PiLG 76 (259)
.++++|+.-++++.+.+. + +.|+.||+||++- |..+ ..-..+..++..+.|++++++|.-+|=
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLM 115 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLM 115 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEE
Confidence 467888888888887542 2 3567899999976 5321 100111123457899999998876665
Q ss_pred Ec
Q 024993 77 TC 78 (259)
Q Consensus 77 IC 78 (259)
|.
T Consensus 116 iG 117 (254)
T COG5426 116 IG 117 (254)
T ss_pred Ec
Confidence 54
No 227
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=48.92 E-value=62 Score=26.06 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=38.3
Q ss_pred CEEEEEecCCChH-------HHHHHHHhCCC---eEEEeCCCC------------CCCCcCEEEEcC----CchhHHHHH
Q 024993 1 MVVGVLALQGSFN-------EHIAALKRLGV---KGVEIRKPD------------QLQNVSSLIIPG----GESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G~~~-------~~~~~L~~~G~---~v~~~~~~~------------~l~~~d~iil~G----G~~~~~~~l 54 (259)
+||+|+...=|.. ...+.|++.|+ .+.+++.|. +-.++|++|.-| |.....+.+
T Consensus 4 ~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v 83 (144)
T PF00885_consen 4 LRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYV 83 (144)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHH
T ss_pred CEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHH
Confidence 5899997543211 23456778887 566655431 114799998877 322222332
Q ss_pred HhhCCHHHHHHHHHHcCCcE
Q 024993 55 AEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~Pi 74 (259)
... -....++-.++.++||
T Consensus 84 ~~~-v~~gl~~lsl~~~~PV 102 (144)
T PF00885_consen 84 ANA-VSRGLMDLSLEYGIPV 102 (144)
T ss_dssp HHH-HHHHHHHHHHHHTSEE
T ss_pred HHH-HHHHHHHHhccCCccE
Confidence 211 1123333335668884
No 228
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=48.81 E-value=57 Score=28.14 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHHhCCCeEEEeC--CCC------CCCCcCEEEEcC--CchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 15 HIAALKRLGVKGVEIR--KPD------QLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~--~~~------~l~~~d~iil~G--G~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+.+.|++.|++|++.. +++ .|+++|.||+-+ +.+...+. ..+.+.+++++|+=++|+=.|+
T Consensus 28 ~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~e------q~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 28 IAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKDE------IVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCHH------HHHHHHHHHHcCCCEEEECCCc
Confidence 4467899999988543 322 478999999833 21111111 2456778888999988887766
No 229
>PRK11914 diacylglycerol kinase; Reviewed
Probab=48.35 E-value=1.1e+02 Score=27.33 Aligned_cols=50 Identities=30% Similarity=0.383 Sum_probs=31.8
Q ss_pred CEEEEEecC--CC------hHHHHHHHHhCCCeEEEeCC--CC-------C--CCCcCEEEEcCCchhH
Q 024993 1 MVVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PD-------Q--LQNVSSLIIPGGESTT 50 (259)
Q Consensus 1 mki~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~-------~--l~~~d~iil~GG~~~~ 50 (259)
||++||.++ |+ +..+.+.|++.|+++.++.. .. + ...+|.||+.||..+.
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 467888764 32 22466788889988765422 11 1 1467999999986544
No 230
>PRK13054 lipid kinase; Reviewed
Probab=47.85 E-value=1.2e+02 Score=26.98 Aligned_cols=50 Identities=18% Similarity=0.146 Sum_probs=31.1
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEeC--CCCC---------CCCcCEEEEcCCchhH
Q 024993 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIR--KPDQ---------LQNVSSLIIPGGESTT 50 (259)
Q Consensus 1 mki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~--~~~~---------l~~~d~iil~GG~~~~ 50 (259)
||++|+.++.. +..+.+.|++.|.++.+.. .+.+ .+.+|.||..||..+.
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHH
Confidence 36777766432 3356677888898876542 2211 1468999999986543
No 231
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=47.71 E-value=46 Score=25.96 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCeEEEeC---CC-C--------CCCCcCEEEEcCCch
Q 024993 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~---~~-~--------~l~~~d~iil~GG~~ 48 (259)
.+..+|++.|+++.... +. + .++++|.||.+||.+
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 45577899998877642 22 1 124699999999854
No 232
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=47.10 E-value=93 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=23.9
Q ss_pred ChHHHHHHHH----hCCCeEEEeCC-CC---------CCCCcCEEEE-cCCch
Q 024993 11 SFNEHIAALK----RLGVKGVEIRK-PD---------QLQNVSSLII-PGGES 48 (259)
Q Consensus 11 ~~~~~~~~L~----~~G~~v~~~~~-~~---------~l~~~d~iil-~GG~~ 48 (259)
++.++.+.++ +.|+++..+.. .+ ..+++|+||+ ||++.
T Consensus 25 tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 77 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALT 77 (141)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHh
Confidence 3555555544 45888888743 21 1246899888 88865
No 233
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.73 E-value=64 Score=31.01 Aligned_cols=29 Identities=28% Similarity=0.027 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-..++-.++.++|.+.|+++.+..
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVAD 45 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 57777766666677788888888766654
No 234
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=44.82 E-value=1.4e+02 Score=28.55 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=41.8
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCC--CeEEEeCCC-----------------CCCCCcCEEEE--cCCchhHHHHHHhh
Q 024993 1 MVVGVLALQG--SFNEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLII--PGGESTTMARLAEY 57 (259)
Q Consensus 1 mki~vl~~~G--~~~~~~~~L~~~G--~~v~~~~~~-----------------~~l~~~d~iil--~GG~~~~~~~l~~~ 57 (259)
.||+|+.... .+.++.+.+.++. +++.+++.. +...++|.||+ +||.-+++.....
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~- 208 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFND- 208 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCc-
Confidence 3799997643 3667888887664 566665432 11235898888 4554333322211
Q ss_pred CCHHHHHHHHHHcCCcEEE
Q 024993 58 HNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 58 ~~~~~~i~~~~~~g~PiLG 76 (259)
....+...+..+||+-
T Consensus 209 ---e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 209 ---EKVARAIFLSKIPIIS 224 (432)
T ss_pred ---HHHHHHHHcCCCCEEE
Confidence 2445555567899764
No 235
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=44.28 E-value=1.1e+02 Score=29.31 Aligned_cols=71 Identities=21% Similarity=0.307 Sum_probs=41.2
Q ss_pred EEEEEecC-CC-hHHHHHHHHhC--CCeEEEeCCC-----------------CCCCCcCEEEE--cCCchhHHHHHHhhC
Q 024993 2 VVGVLALQ-GS-FNEHIAALKRL--GVKGVEIRKP-----------------DQLQNVSSLII--PGGESTTMARLAEYH 58 (259)
Q Consensus 2 ki~vl~~~-G~-~~~~~~~L~~~--G~~v~~~~~~-----------------~~l~~~d~iil--~GG~~~~~~~l~~~~ 58 (259)
+|+|+.-+ |. ..++.+.++++ .+++.+++.. +...++|.||+ +||.-+++-...+
T Consensus 137 ~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNd-- 214 (440)
T COG1570 137 KIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFND-- 214 (440)
T ss_pred eEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccCh--
Confidence 68888754 32 55777888765 4566666431 13457999888 4443233211111
Q ss_pred CHHHHHHHHHHcCCcEEE
Q 024993 59 NLFPALREFVKMGKPVWG 76 (259)
Q Consensus 59 ~~~~~i~~~~~~g~PiLG 76 (259)
....|...+..+||..
T Consensus 215 --E~vaRAi~~s~iPvIS 230 (440)
T COG1570 215 --EIVARAIAASRIPVIS 230 (440)
T ss_pred --HHHHHHHHhCCCCeEe
Confidence 2455666678899764
No 236
>PRK06455 riboflavin synthase; Provisional
Probab=43.84 E-value=1.5e+02 Score=24.39 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=27.7
Q ss_pred CEEEEEecCCChH----HHHHHHHhCC--CeEEEeCCCC---------CC---CCcCEEEEcC
Q 024993 1 MVVGVLALQGSFN----EHIAALKRLG--VKGVEIRKPD---------QL---QNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~----~~~~~L~~~G--~~v~~~~~~~---------~l---~~~d~iil~G 45 (259)
|||+|+...=|.. ...+.|++.| ..+.+++.|- .+ .+||++|.-|
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG 64 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALG 64 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 7899997432211 2346677744 6666665542 11 4799999988
No 237
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=43.80 E-value=66 Score=27.58 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=48.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC------CC----CCC-CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHH
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------PD----QLQ-NVSSLIIPGGESTTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~~----~l~-~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~ 69 (259)
|+|+|..-.+.-..+.+.|++.|+++..++. ++ .+. .+|.||++.... .+.+.. . ...++..
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~na--V~~~~~-~--~~~~~~~-- 73 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEA--VRHLAA-L--GERLLPH-- 73 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHH--HHHHHh-c--chhhHHh--
Confidence 8999998777777888999999998887531 11 122 478998876321 111111 0 0112211
Q ss_pred cCCcEEEEchhHHHHHHhh
Q 024993 70 MGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 70 ~g~PiLGIC~G~QlL~~~~ 88 (259)
.+.|+++|.-+-.-..+.+
T Consensus 74 ~~~~~~aVG~~Ta~~l~~~ 92 (240)
T PRK09189 74 LALPLFAVGEATAEAAREL 92 (240)
T ss_pred cCCeEEEEcHHHHHHHHHc
Confidence 3678877776555444444
No 238
>PRK13055 putative lipid kinase; Reviewed
Probab=43.61 E-value=1.4e+02 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=31.0
Q ss_pred CEEEEEecC--CC------hHHHHHHHHhCCCeEEEe--C-CC-C------C--CCCcCEEEEcCCchhH
Q 024993 1 MVVGVLALQ--GS------FNEHIAALKRLGVKGVEI--R-KP-D------Q--LQNVSSLIIPGGESTT 50 (259)
Q Consensus 1 mki~vl~~~--G~------~~~~~~~L~~~G~~v~~~--~-~~-~------~--l~~~d~iil~GG~~~~ 50 (259)
||++||.++ |+ +..+.+.|++.|+++.++ . .. + + ...+|.||+.||..+.
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 368888775 33 224567788889876653 1 11 1 1 1367999998886543
No 239
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.58 E-value=1.8e+02 Score=25.45 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=38.0
Q ss_pred EEEEEecC-CChH-HHHHHHHhCCCeEEEeCC-------------CC---------CCCCcCEEEEcCCchhHHHHHHhh
Q 024993 2 VVGVLALQ-GSFN-EHIAALKRLGVKGVEIRK-------------PD---------QLQNVSSLIIPGGESTTMARLAEY 57 (259)
Q Consensus 2 ki~vl~~~-G~~~-~~~~~L~~~G~~v~~~~~-------------~~---------~l~~~d~iil~GG~~~~~~~l~~~ 57 (259)
||+|+.-+ .... .+.++|++.|++|.-+.. ++ +-+++|+|++++..-...+.
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~v---- 197 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAATC---- 197 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHH----
Confidence 58888632 2222 245788999999876521 00 12478999998743222222
Q ss_pred CCHHHHHHHHHHcCCcEEE
Q 024993 58 HNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 58 ~~~~~~i~~~~~~g~PiLG 76 (259)
.+.|.+. -|+||+-
T Consensus 198 ---i~~lE~~--lGkPVls 211 (239)
T TIGR02990 198 ---AQRIEQA--IGKPVVT 211 (239)
T ss_pred ---HHHHHHH--HCCCEEE
Confidence 2334333 3999986
No 240
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=43.33 E-value=77 Score=32.16 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=35.5
Q ss_pred CeEEEeCCC-----CCCCCcCEEEEcCCchhH----HHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 24 VKGVEIRKP-----DQLQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 24 ~~v~~~~~~-----~~l~~~d~iil~GG~~~~----~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
++|+.++-. ..+++.|.||-.|...++ ..|. +..+.+.|++++++|.-++|++-
T Consensus 482 ~dV~FisFdDi~~~gi~~didViIN~G~a~ta~SGG~~W~--d~~~~~aLr~fV~~GGglIGVgD 544 (719)
T TIGR02336 482 VEVEFISFDDILEHGIDSDIDVIINGGDADTAWSGGDVWT--NPKLVETVRAWVRGGGGFVGVGE 544 (719)
T ss_pred eeEEEecHHHHhhcCCCcCCcEEEecCcccccccCccccC--CHHHHHHHHHHHHcCCeEEEEEC
Confidence 466666532 235688999988843221 1222 13467899999999999998884
No 241
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=42.97 E-value=1.3e+02 Score=25.23 Aligned_cols=29 Identities=31% Similarity=0.032 Sum_probs=18.5
Q ss_pred CEEEEEec---CCChH-----HHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLAL---QGSFN-----EHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~---~G~~~-----~~~~~L~~~G~~v~~~ 29 (259)
|||++|.- .+++. .+.+.+.+.|++++.+
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~i 37 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHW 37 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999962 13333 2335566679888875
No 242
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=42.74 E-value=1.6e+02 Score=23.76 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=37.9
Q ss_pred CEEEEEecCCC--hH-----HHHHHHHhCCCe---EEEeCCCC---------C---CCCcCEEEEcC----CchhHHHHH
Q 024993 1 MVVGVLALQGS--FN-----EHIAALKRLGVK---GVEIRKPD---------Q---LQNVSSLIIPG----GESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G~--~~-----~~~~~L~~~G~~---v~~~~~~~---------~---l~~~d~iil~G----G~~~~~~~l 54 (259)
+||+|+...=| .. ...+.|++.|++ +.+++.|- . -.+||++|..| |..+..+.+
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V 87 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAV 87 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHH
Confidence 58888864311 11 124567778874 45555431 1 14799998877 322223333
Q ss_pred HhhCCHHHHHHHHHHcCCcE
Q 024993 55 AEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~Pi 74 (259)
... -.....+-.++.++||
T Consensus 88 ~~~-v~~gl~~vsl~~~~PV 106 (141)
T PLN02404 88 ANS-AASGVLSAGLNSGVPC 106 (141)
T ss_pred HHH-HHHHHHHHHhccCCCE
Confidence 221 1123344445678885
No 243
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=42.71 E-value=1.1e+02 Score=30.98 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=49.6
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC------C---------CCCCCcCEEEEcCCc--hhHHHHHHhhCCHHHH
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------P---------DQLQNVSSLIIPGGE--STTMARLAEYHNLFPA 63 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~---------~~l~~~d~iil~GG~--~~~~~~l~~~~~~~~~ 63 (259)
|+|+|..-.+.-..+.+.|+..|+++..++. . .++.+||.||++... ...++.+.
T Consensus 4 ~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~-------- 75 (656)
T PRK06975 4 FTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLD-------- 75 (656)
T ss_pred CEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHH--------
Confidence 7899998666677788999999998877531 1 245789999997743 22222221
Q ss_pred HHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 64 LREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 64 i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
...-.+.|+++|.-+-.-....+
T Consensus 76 --~~~~~~~~i~AVG~~Ta~aL~~~ 98 (656)
T PRK06975 76 --AIWPHALPVAVVGPGSVAALARH 98 (656)
T ss_pred --hhCccCCeEEEECHHHHHHHHHc
Confidence 11114678888876655433333
No 244
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.39 E-value=90 Score=29.91 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-+.-+-.+..+.|.. |+++.+.+
T Consensus 8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D 35 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQN-KYDVIVYD 35 (454)
T ss_pred EEEEEeecHHHHHHHHHHhC-CCEEEEEC
Confidence 68888764455577888884 99888875
No 245
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=42.24 E-value=1.8e+02 Score=23.29 Aligned_cols=74 Identities=26% Similarity=0.314 Sum_probs=38.2
Q ss_pred CEEEEEecC--CChH-----HHHHHHHhCCCe---EEEeCCCC---------CC---CCcCEEEEcC----CchhHHHHH
Q 024993 1 MVVGVLALQ--GSFN-----EHIAALKRLGVK---GVEIRKPD---------QL---QNVSSLIIPG----GESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~--G~~~-----~~~~~L~~~G~~---v~~~~~~~---------~l---~~~d~iil~G----G~~~~~~~l 54 (259)
|||+|+..+ .... ...+.|++.|+. +.+++.|- .+ .+||++|.-| |..+..+.+
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v 80 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYV 80 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHH
Confidence 789999732 1111 234567777874 34554431 11 4799998877 322222333
Q ss_pred HhhCCHHHHHHHHHHcCCcEE
Q 024993 55 AEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiL 75 (259)
... -....++-.++.++|+.
T Consensus 81 ~~~-v~~gl~~~sl~~~~PV~ 100 (138)
T TIGR00114 81 ADE-AAKGIADLALDYDKPVI 100 (138)
T ss_pred HHH-HHHHHHHHHhhhCCCEE
Confidence 221 11233444456688853
No 246
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=42.15 E-value=43 Score=30.93 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=35.3
Q ss_pred HHHHHHhCCCeEEEeC-C--CCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIR-K--PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~-~--~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.+.|...|++..+++ . ..+++.+|.||--||..+-+- +. -+.++..+||+||=
T Consensus 80 ~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~--Aa--------srv~~~~~PViGvN 136 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLL--AA--------SRVIDDSKPVIGVN 136 (395)
T ss_pred HHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceee--hh--------hhhhccCCceeeec
Confidence 4456777888877764 2 345788999999998654311 00 12345789999983
No 247
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=41.80 E-value=46 Score=32.22 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=29.0
Q ss_pred CEEEEEecC-------------CChHHH-HHHHHhCCC--eEEEeCCC---------CCCCCcCEEEEcCC
Q 024993 1 MVVGVLALQ-------------GSFNEH-IAALKRLGV--KGVEIRKP---------DQLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~-------------G~~~~~-~~~L~~~G~--~v~~~~~~---------~~l~~~d~iil~GG 46 (259)
||++|++-+ |-|.-+ .-+|+..|. ++.+++.+ +.+.++|.+++-+|
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~l~k~d~~V~I~G 71 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEILNKYDLVVFIAG 71 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHHcCCCceeEEEEHHHhhccchhhhhhhcCCEEEEEec
Confidence 899999821 234433 357888864 44444321 24678999888666
No 248
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=41.79 E-value=5.2 Score=32.45 Aligned_cols=40 Identities=13% Similarity=0.331 Sum_probs=20.9
Q ss_pred CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 37 ~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
++|.||+.||.......... .+..+.|.+.. .+.+.|||+
T Consensus 80 ~~D~vVlmGGLAMP~~~v~~-e~v~~li~ki~--~~~iiGiCF 119 (147)
T PF09897_consen 80 HPDVVVLMGGLAMPKSGVTP-EDVNELIKKIS--PKKIIGICF 119 (147)
T ss_dssp -EEEEEEEGGGGSTTTS--H-HHHHHHHHHHE--EEEEEEEEE
T ss_pred CCCEEEEEcccccCCCCCCH-HHHHHHHHHhC--cCCEEEEeh
Confidence 38999999984311000000 01234555542 344999996
No 249
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.83 E-value=1.6e+02 Score=27.89 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=40.7
Q ss_pred EEEEEecCC--ChHHHHHHHHhCC--CeEEEeCCC-------C-------CCC--CcCEEEE--cCCchhHHHHHHhhCC
Q 024993 2 VVGVLALQG--SFNEHIAALKRLG--VKGVEIRKP-------D-------QLQ--NVSSLII--PGGESTTMARLAEYHN 59 (259)
Q Consensus 2 ki~vl~~~G--~~~~~~~~L~~~G--~~v~~~~~~-------~-------~l~--~~d~iil--~GG~~~~~~~l~~~~~ 59 (259)
||||+.... .+.++.+.+.++. +++.+++.. . .++ .+|.||+ +||.-+++....
T Consensus 137 ~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn---- 212 (438)
T PRK00286 137 RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFN---- 212 (438)
T ss_pred EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccC----
Confidence 799997543 3667777776653 567766532 0 122 2798888 556433332221
Q ss_pred HHHHHHHHHHcCCcEEE
Q 024993 60 LFPALREFVKMGKPVWG 76 (259)
Q Consensus 60 ~~~~i~~~~~~g~PiLG 76 (259)
-...++...+..+||+.
T Consensus 213 ~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 213 DEAVARAIAASRIPVIS 229 (438)
T ss_pred cHHHHHHHHcCCCCEEE
Confidence 13455555567899764
No 250
>PRK09273 hypothetical protein; Provisional
Probab=39.92 E-value=41 Score=29.03 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=22.7
Q ss_pred CEEEEEecCCC-------hHHHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGS-------FNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~-------~~~~~~~L~~~G~~v~~~~ 30 (259)
||||+|+.... +..+.++|+..|++|.-+.
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G 37 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYG 37 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeC
Confidence 99999985442 4456778899999887664
No 251
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=39.85 E-value=1.2e+02 Score=29.87 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=41.9
Q ss_pred EEEEEecCCCh-----HHHHHHHHhCCCeEEEeCC----------CCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHH
Q 024993 2 VVGVLALQGSF-----NEHIAALKRLGVKGVEIRK----------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (259)
Q Consensus 2 ki~vl~~~G~~-----~~~~~~L~~~G~~v~~~~~----------~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~ 66 (259)
||+++.-+|.. ..+.+.|+ .++++..+.. +++|.++|++|+.+-..+-.+. ....|.+
T Consensus 185 ~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~ls~~------e~~~Ldq 257 (552)
T TIGR03521 185 RIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEAFSER------EKYILDQ 257 (552)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCccCCHH------HHHHHHH
Confidence 58888877643 34556666 6677765432 1234589999998853211111 1467888
Q ss_pred HHHcCCcEEE
Q 024993 67 FVKMGKPVWG 76 (259)
Q Consensus 67 ~~~~g~PiLG 76 (259)
|+++|.++|-
T Consensus 258 fl~~GG~ll~ 267 (552)
T TIGR03521 258 YIMNGGKALF 267 (552)
T ss_pred HHHcCCeEEE
Confidence 8888887654
No 252
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=39.66 E-value=87 Score=26.12 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=23.8
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|=+-+..+. .+.++|++.|++|+-+..
T Consensus 1 MkI~IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T PRK08622 1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGT 34 (171)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8999877665544 577899999998877654
No 253
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=39.56 E-value=74 Score=25.66 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=23.4
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|=.-+..+. .+.++|++.|++|+-+..
T Consensus 1 MkI~IgsDh~G~~lK~~i~~~L~~~G~eV~D~G~ 34 (141)
T TIGR01118 1 MAIIIGSDLAGKRLKDVIKNFLVDNGFEVIDVTE 34 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8999887666554 467899999998876544
No 254
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=39.23 E-value=55 Score=27.69 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=33.0
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC------C--------CCCCCcCEEEEcCCc
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------P--------DQLQNVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~--------~~l~~~d~iil~GG~ 47 (259)
|||+|......-..+.+.|++.|+++..++. + ..+..+|.||++...
T Consensus 2 ~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~ 62 (249)
T PRK05928 2 MKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKN 62 (249)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHH
Confidence 6788886544455677899999998876431 1 134689999998753
No 255
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=39.18 E-value=2.1e+02 Score=24.16 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=34.9
Q ss_pred EEEEEecC--CChH-H----HHHHHHhC---CC--eEEEeCCCC----------C-C-CCcCEEEEcCCchhHHHHHHhh
Q 024993 2 VVGVLALQ--GSFN-E----HIAALKRL---GV--KGVEIRKPD----------Q-L-QNVSSLIIPGGESTTMARLAEY 57 (259)
Q Consensus 2 ki~vl~~~--G~~~-~----~~~~L~~~---G~--~v~~~~~~~----------~-l-~~~d~iil~GG~~~~~~~l~~~ 57 (259)
||+|+... ..|. . +.+++++. |. ++.+..... . + .++|+||+........
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~------ 74 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTAL------ 74 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh------
Confidence 67777522 2232 2 34566777 87 445554321 1 1 3799999966432211
Q ss_pred CCHHHHHHHHHHcCCcEEEE
Q 024993 58 HNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 58 ~~~~~~i~~~~~~g~PiLGI 77 (259)
.+.+..+.+.++|++.+
T Consensus 75 ---~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 75 ---NPVIEEACEAGIPVVSF 91 (272)
T ss_pred ---HHHHHHHHHCCCeEEEE
Confidence 12233344567787764
No 256
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=38.33 E-value=2.1e+02 Score=23.10 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=39.6
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEeCCC--CCCCCcCEEEEcC--CchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 2 ki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~--~~l~~~d~iil~G--G~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
+|.|+-..++.. .....|...|..+....+. ..+.+-|.+|+-. |.... +.+.++.+.++|.|+
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~---------~i~~~~~ak~~g~~i 102 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETES---------LVTVAKKAKEIGATV 102 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHH---------HHHHHHHHHHCCCeE
Confidence 355554443433 2334566778877776543 2345567766533 33221 234555666789999
Q ss_pred EEEch
Q 024993 75 WGTCA 79 (259)
Q Consensus 75 LGIC~ 79 (259)
++|+.
T Consensus 103 i~IT~ 107 (179)
T TIGR03127 103 AAITT 107 (179)
T ss_pred EEEEC
Confidence 99995
No 257
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=38.16 E-value=2e+02 Score=25.97 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=30.6
Q ss_pred CEEEEEecC--CC------hHHHHHHHHhCCCeEEEeC--CC-C------C--CCCcCEEEEcCCchh
Q 024993 1 MVVGVLALQ--GS------FNEHIAALKRLGVKGVEIR--KP-D------Q--LQNVSSLIIPGGEST 49 (259)
Q Consensus 1 mki~vl~~~--G~------~~~~~~~L~~~G~~v~~~~--~~-~------~--l~~~d~iil~GG~~~ 49 (259)
||+.++.++ |. +..+.+.|++.|.++.... .. + + ...+|.||..||...
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT 70 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT 70 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch
Confidence 456666553 31 3356778899998877642 22 1 1 136999999998543
No 258
>PRK05569 flavodoxin; Provisional
Probab=37.87 E-value=70 Score=24.83 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=27.3
Q ss_pred EEEEEecC--CChHHHH----HHHHhCCCeEEEeCCC----CCCCCcCEEEEcC
Q 024993 2 VVGVLALQ--GSFNEHI----AALKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (259)
Q Consensus 2 ki~vl~~~--G~~~~~~----~~L~~~G~~v~~~~~~----~~l~~~d~iil~G 45 (259)
||+|+-.. ||=..+. +.+++.|+++.+.+.. .++.++|+|++.-
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgs 56 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGS 56 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEEC
Confidence 67777653 3333333 4455578888776532 2556899999854
No 259
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=37.64 E-value=20 Score=33.29 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=27.5
Q ss_pred EEEEEECccCCCchHHHHHHHHHHHhcCCCccC
Q 024993 196 LLGTAFHPELTADTRWHSYFLKMMSEVGEGTSS 228 (259)
Q Consensus 196 v~gvQfHPE~~~~~~i~~nfl~~~~~~~~~~~~ 228 (259)
..-.+||||.+.+ .++.+|.+.|..||--||-
T Consensus 75 ~vp~~wkPe~~~D-~~~lqfCk~CqgYKapRSH 106 (414)
T KOG1314|consen 75 FVPLGWKPENPKD-EMFLQFCKKCQGYKAPRSH 106 (414)
T ss_pred CCCCCCCCCCChh-HHHHHHHhhccCcCCCccc
Confidence 5567899999887 7889999999999998874
No 260
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=37.58 E-value=80 Score=30.00 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEeC---CC-C--------CCCCcCEEEEcCCch
Q 024993 15 HIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~---~~-~--------~l~~~d~iil~GG~~ 48 (259)
+..+|++.|+++.... ++ + .++++|.||.+||.+
T Consensus 208 l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~S 253 (404)
T COG0303 208 LAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVS 253 (404)
T ss_pred HHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCcc
Confidence 4567889999887653 22 1 235799999999864
No 261
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=37.08 E-value=1.6e+02 Score=24.95 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCC
Q 024993 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG 46 (259)
.+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 20 SIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 355677889999998753211 1 36899999664
No 262
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=36.69 E-value=2.6e+02 Score=24.71 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=44.7
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCCCeEEEeC-C----CCCCC--Cc--CEEEEcCC-chhHHHHHHhhCCHHHHHHHHH
Q 024993 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIR-K----PDQLQ--NV--SSLIIPGG-ESTTMARLAEYHNLFPALREFV 68 (259)
Q Consensus 1 mki~vl~~~G--~~~~~~~~L~~~G~~v~~~~-~----~~~l~--~~--d~iil~GG-~~~~~~~l~~~~~~~~~i~~~~ 68 (259)
||++|++.+. ++...++.|++.|+...+.- . ++++. .. --+-++.+ .++. +.+. .+.+++.+.+
T Consensus 92 ~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~---~~l~~i~~~l 167 (241)
T PTZ00393 92 IKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVS---NWLTIVNNVI 167 (241)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHH---HHHHHHHHHH
Confidence 7899998765 46677899999998665532 1 11221 11 22445554 3322 2221 2456666667
Q ss_pred HcCCcEEEEch
Q 024993 69 KMGKPVWGTCA 79 (259)
Q Consensus 69 ~~g~PiLGIC~ 79 (259)
+.|.+|+-=|.
T Consensus 168 ~~g~~VaVHC~ 178 (241)
T PTZ00393 168 KNNRAVAVHCV 178 (241)
T ss_pred hcCCeEEEECC
Confidence 78999998884
No 263
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=36.28 E-value=83 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=23.2
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|=+-+..+. .+.++|+..|++|+-+..
T Consensus 1 mkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (142)
T PRK08621 1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTE 34 (142)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEECCC
Confidence 8988877666544 467899999998876544
No 264
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=36.25 E-value=20 Score=28.94 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=29.9
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC-C-----C-----------CCCCcCEEEEcCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK-P-----D-----------QLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~-~-----~-----------~l~~~d~iil~GG 46 (259)
+||+++ |.+..+.+.|+..+.++.++.- + . .++++|.++++|.
T Consensus 12 ~~V~~V---G~f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 12 DKVGMV---GYFQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp SEEEEE---S--HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH
T ss_pred CEEEEE---cCcHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee
Confidence 478888 6677788889888899988742 1 0 2468999999995
No 265
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=36.11 E-value=1.4e+02 Score=27.95 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEe
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEI 29 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~ 29 (259)
||.|+-..|+-..+.+.|.+.|++|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~s 28 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVT 28 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEE
Confidence 4666666665557777777777766654
No 266
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=35.56 E-value=39 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=22.3
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|-+-+|- ...+.++|++.|.+|.++.+
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP 35 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAP 35 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEE
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeC
Confidence 99999975552 44677888878899998754
No 267
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=35.52 E-value=62 Score=25.43 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=22.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~ 30 (259)
|||+||-. |+.. .+.++|.+.|+.+.-+.
T Consensus 11 l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 11 LKIGIIGA-GRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp -EEEEECT-SCCCCHHHHHHHHTTSEEEEES
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCCeEEEEE
Confidence 79999964 6665 57789999999887653
No 268
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.51 E-value=1.7e+02 Score=27.51 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=23.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-..+.-.++.++|++.|++|...+
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D 33 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVD 33 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEe
Confidence 58999887777788999999999877654
No 269
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=35.45 E-value=1.4e+02 Score=30.75 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=22.9
Q ss_pred EEEEecCCChHHH-HHHHHhCCCeEEEeC
Q 024993 3 VGVLALQGSFNEH-IAALKRLGVKGVEIR 30 (259)
Q Consensus 3 i~vl~~~G~~~~~-~~~L~~~G~~v~~~~ 30 (259)
|.|+-..++-.+. .+.|.+.|++|...+
T Consensus 7 i~viG~G~sG~salA~~L~~~G~~V~~sD 35 (809)
T PRK14573 7 YHFIGIGGIGMSALAHILLDRGYSVSGSD 35 (809)
T ss_pred EEEEEecHHhHHHHHHHHHHCCCeEEEEC
Confidence 8888887777775 789999999888764
No 270
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=35.35 E-value=1.1e+02 Score=25.58 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=23.5
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|=+-+..|. .+.++|+..|++|+-+..
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T PRK12615 1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGT 34 (171)
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8988877666554 467899999998876643
No 271
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=35.12 E-value=11 Score=23.55 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.1
Q ss_pred EEEEchhHHHHHHh
Q 024993 74 VWGTCAGLIFLANK 87 (259)
Q Consensus 74 iLGIC~G~QlL~~~ 87 (259)
..|-|+|.|+|..+
T Consensus 32 tagacfgaqimvaa 45 (48)
T PF09075_consen 32 TAGACFGAQIMVAA 45 (48)
T ss_dssp S--TTTTTHHHHTT
T ss_pred ccccccchhhhhhc
Confidence 46889999999865
No 272
>PRK13337 putative lipid kinase; Reviewed
Probab=35.07 E-value=2.6e+02 Score=24.95 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=31.1
Q ss_pred CEEEEEecC--CC------hHHHHHHHHhCCCeEEEeC--CCC-------CC--CCcCEEEEcCCchhH
Q 024993 1 MVVGVLALQ--GS------FNEHIAALKRLGVKGVEIR--KPD-------QL--QNVSSLIIPGGESTT 50 (259)
Q Consensus 1 mki~vl~~~--G~------~~~~~~~L~~~G~~v~~~~--~~~-------~l--~~~d~iil~GG~~~~ 50 (259)
||++|+.++ |+ +..+.+.|++.|.++.++. ... ++ +.+|.||+.||..+.
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 457777764 33 2245667888998876542 221 11 357899998886543
No 273
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=34.89 E-value=1.1e+02 Score=27.47 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=30.9
Q ss_pred CEEEEEecCCChHH--HHHHHHhCCCeEEEeCCC---------------C-CCCCcCEEEEcC
Q 024993 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKP---------------D-QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~G~~v~~~~~~---------------~-~l~~~d~iil~G 45 (259)
++++|| .|+... +.+.|.+.|++|.++-.+ + .+.+.|.||+|=
T Consensus 2 ~~~~v~--ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 2 IHIAVI--GGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred cEEEEE--cccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECC
Confidence 578888 577664 568999999998876321 1 246799999954
No 274
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=34.80 E-value=2.5e+02 Score=23.05 Aligned_cols=74 Identities=11% Similarity=0.143 Sum_probs=38.3
Q ss_pred CEEEEEecC--CChHH-----HHHHHHhCCC---eEEEeCCCC------------CCCCcCEEEEcC----CchhHHHHH
Q 024993 1 MVVGVLALQ--GSFNE-----HIAALKRLGV---KGVEIRKPD------------QLQNVSSLIIPG----GESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~--G~~~~-----~~~~L~~~G~---~v~~~~~~~------------~l~~~d~iil~G----G~~~~~~~l 54 (259)
+||+|+..+ ....+ ..+.|++.|+ ++.+++.|- .-.+||++|.-| |.....+.+
T Consensus 11 ~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V 90 (158)
T PRK12419 11 QRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFV 90 (158)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHH
Confidence 478888632 22222 2456777884 355555441 114799998887 322223333
Q ss_pred HhhCCHHHHHHHHHHcCCcEE
Q 024993 55 AEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiL 75 (259)
... -.....+-.++.++||.
T Consensus 91 ~~~-v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 91 AQA-VIDGLMRVQLDTEVPVF 110 (158)
T ss_pred HHH-HHHHHHHHHhccCCCEE
Confidence 321 11233444456788853
No 275
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=34.72 E-value=2e+02 Score=24.83 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=21.9
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCC
Q 024993 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG 46 (259)
|||++++ .+|++..+.+.++..- -.++|.||+.|-
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~-----------~~~~D~vv~~GD 40 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAP-----------ETGADAIVLIGN 40 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHh-----------hcCCCEEEECCC
Confidence 7877776 5788776666555320 024677777773
No 276
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.94 E-value=1.7e+02 Score=27.97 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=20.8
Q ss_pred CEEEEEecCCC--------hHHHHHHHHhCC--CeEEEeC
Q 024993 1 MVVGVLALQGS--------FNEHIAALKRLG--VKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~--------~~~~~~~L~~~G--~~v~~~~ 30 (259)
|||+|.-++|. +.++++.|++.. +++++++
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S 40 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMS 40 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 89999987653 345677887654 6777654
No 277
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.85 E-value=2.4e+02 Score=23.77 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=31.0
Q ss_pred HHHHHHhCCCeEEEeCCCCC-----------C-CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 15 HIAALKRLGVKGVEIRKPDQ-----------L-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~-----------l-~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+.+++++.|+.+.++....+ + .++|+||+....+... .+.++++.++++|+..+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~---------~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 21 TKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVL---------KPWVKRALDAGIPVVAF 86 (273)
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhh---------HHHHHHHHHcCCCEEEe
Confidence 45677888999888643211 1 3799999965432111 12334444567776544
No 278
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=33.45 E-value=79 Score=26.42 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=38.6
Q ss_pred hHHHHHHHHhCCCeEEEeCC----------C---CCCCCcCEEEEcC-CchhHHHHH-HhhCCHHHHHHHHHHcCCcEEE
Q 024993 12 FNEHIAALKRLGVKGVEIRK----------P---DQLQNVSSLIIPG-GESTTMARL-AEYHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~----------~---~~l~~~d~iil~G-G~~~~~~~l-~~~~~~~~~i~~~~~~g~PiLG 76 (259)
...+...|.+.+.++..+.. . ++|.+||.||+.. +....+... . ....+.|++++++|.-++-
T Consensus 29 v~~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~--~~~~~~l~~yV~~GGgLlm 106 (177)
T PF07090_consen 29 VDLLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRS--PNQLELLADYVRDGGGLLM 106 (177)
T ss_dssp SHHHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT------HHHHHHHHHHHHTT-EEEE
T ss_pred hHHHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCC--HHHHHHHHHHHHhCCEEEE
Confidence 44567888889998877642 1 2467999999988 433321000 1 1235788999988776544
Q ss_pred EchhHH
Q 024993 77 TCAGLI 82 (259)
Q Consensus 77 IC~G~Q 82 (259)
| .|.+
T Consensus 107 i-gG~~ 111 (177)
T PF07090_consen 107 I-GGPR 111 (177)
T ss_dssp E--STT
T ss_pred E-eChh
Confidence 4 3443
No 279
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=33.08 E-value=2.7e+02 Score=22.69 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=38.0
Q ss_pred CEEEEEecCCC--hH-----HHHHHHHhCC---CeEEEeCCCC---------CC---CCcCEEEEcC----CchhHHHHH
Q 024993 1 MVVGVLALQGS--FN-----EHIAALKRLG---VKGVEIRKPD---------QL---QNVSSLIIPG----GESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G~--~~-----~~~~~L~~~G---~~v~~~~~~~---------~l---~~~d~iil~G----G~~~~~~~l 54 (259)
+||+|+...=+ .. ...+.|++.| ..+.+++.|- .+ .+||++|..| |..+..+.+
T Consensus 13 ~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V 92 (154)
T PRK00061 13 LRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYV 92 (154)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHH
Confidence 48899874311 11 2345677778 3455555441 11 4699998877 322222333
Q ss_pred HhhCCHHHHHHHHHHcCCcEE
Q 024993 55 AEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiL 75 (259)
... -....++-.++.++||.
T Consensus 93 ~~~-v~~gl~~v~l~~~~PV~ 112 (154)
T PRK00061 93 ANE-VAKGLADVSLETGVPVG 112 (154)
T ss_pred HHH-HHHHHHHHHhccCCCEE
Confidence 221 11233444456788853
No 280
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=32.77 E-value=1.3e+02 Score=25.00 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=23.7
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|=+-+..+. .+.++|++.|++|+-+..
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T TIGR01119 1 MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGT 34 (171)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEeCC
Confidence 8998877665544 577899999998877654
No 281
>PRK05568 flavodoxin; Provisional
Probab=32.59 E-value=1.1e+02 Score=23.67 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=28.1
Q ss_pred CE-EEEEecC--CChHHH----HHHHHhCCCeEEEeCCC----CCCCCcCEEEEcCC
Q 024993 1 MV-VGVLALQ--GSFNEH----IAALKRLGVKGVEIRKP----DQLQNVSSLIIPGG 46 (259)
Q Consensus 1 mk-i~vl~~~--G~~~~~----~~~L~~~G~~v~~~~~~----~~l~~~d~iil~GG 46 (259)
|| ++|+-.. ||=..+ .+.++..|++++++... .++.++|+|++.-.
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp 57 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSP 57 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECC
Confidence 44 6777543 443333 34456678888876533 24678999988553
No 282
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=32.47 E-value=2.7e+02 Score=22.54 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=40.7
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEeCCC--CCCCCcCEEEEcC--CchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 2 ki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~--~~l~~~d~iil~G--G~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
||.|+-.++++. .....|...|..+....+. ..+.+-|.+|+-. |.... +.+.++.+.+.|.|+
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~---------~i~~~~~ak~~g~~i 105 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSS---------VVNAAEKAKKAGAKV 105 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHH---------HHHHHHHHHHCCCeE
Confidence 466666544443 2334566678888776543 2344567766533 43222 235556666789999
Q ss_pred EEEch
Q 024993 75 WGTCA 79 (259)
Q Consensus 75 LGIC~ 79 (259)
++|+.
T Consensus 106 I~IT~ 110 (179)
T cd05005 106 VLITS 110 (179)
T ss_pred EEEEC
Confidence 99984
No 283
>PRK12359 flavodoxin FldB; Provisional
Probab=32.47 E-value=1.3e+02 Score=24.95 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=27.7
Q ss_pred CEEEEEecC--CChHHHHHHHH-hCCCe-EEEeC--C--CCCCCCcCEEEEcC
Q 024993 1 MVVGVLALQ--GSFNEHIAALK-RLGVK-GVEIR--K--PDQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~--G~~~~~~~~L~-~~G~~-v~~~~--~--~~~l~~~d~iil~G 45 (259)
|||+|+-.. ||=..+.+.+. ..|.+ +.+.. . ++++.++|.||+.-
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~~yD~iIlG~ 53 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILGI 53 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHccCCEEEEEe
Confidence 999999643 55556666664 45653 33332 2 23567899988843
No 284
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=31.50 E-value=3e+02 Score=25.42 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=47.7
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEe-CCCCC------CCCcCEEEEcC-Cchh---HHHHHHhhCCHHHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEI-RKPDQ------LQNVSSLIIPG-GEST---TMARLAEYHNLFPALR 65 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~-~~~~~------l~~~d~iil~G-G~~~---~~~~l~~~~~~~~~i~ 65 (259)
|||.|=..+-. |..+++.|++.|.+|.++ ++.+. +-+++.+.++. |... ....+.. ...+-
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R----~~~l~ 76 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIER----QYKLL 76 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHH----HHHHH
Confidence 88877653322 557788999999999885 34321 23678888876 4221 1112211 12223
Q ss_pred HHHHcCCcEEEEchhHHHHH
Q 024993 66 EFVKMGKPVWGTCAGLIFLA 85 (259)
Q Consensus 66 ~~~~~g~PiLGIC~G~QlL~ 85 (259)
+.+.+-+|=+.||.|---.+
T Consensus 77 ~~~~~~~pDv~is~~s~~a~ 96 (335)
T PF04007_consen 77 KLIKKFKPDVAISFGSPEAA 96 (335)
T ss_pred HHHHhhCCCEEEecCcHHHH
Confidence 33445689888887765555
No 285
>PRK13059 putative lipid kinase; Reviewed
Probab=31.20 E-value=3.6e+02 Score=23.95 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=30.9
Q ss_pred CEEEEEecC--CC------hHHHHHHHHhCCCeEEEeCC--CC-------C-CCCcCEEEEcCCchhH
Q 024993 1 MVVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PD-------Q-LQNVSSLIIPGGESTT 50 (259)
Q Consensus 1 mki~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~-------~-l~~~d~iil~GG~~~~ 50 (259)
||+.++-++ |+ +..+.+.|++.|.++.++.. .. . -..+|.||..||..+.
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTV 69 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHH
Confidence 467777664 32 22456678889988776432 11 1 1367999998886543
No 286
>PRK07116 flavodoxin; Provisional
Probab=31.11 E-value=1.8e+02 Score=23.34 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=15.7
Q ss_pred CEEEEEecC--CChHHHHHHHH-hCCCeE
Q 024993 1 MVVGVLALQ--GSFNEHIAALK-RLGVKG 26 (259)
Q Consensus 1 mki~vl~~~--G~~~~~~~~L~-~~G~~v 26 (259)
||++|+-+. |+=..+.+.+. ..+.++
T Consensus 3 ~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~ 31 (160)
T PRK07116 3 NKTLVAYFSATGTTKKVAEKLAEVTGADL 31 (160)
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhcCCe
Confidence 788888764 55555566553 345544
No 287
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=31.05 E-value=67 Score=24.86 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=23.1
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCC
Q 024993 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG 46 (259)
|||+++. .+++...+.++++.. .++|.||+.|-
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~-------------~~~d~vi~~GD 34 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI-------------NEPDFVIILGD 34 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH-------------TTESEEEEES-
T ss_pred CEEEEEeCCCCChhHHHHHHHHh-------------cCCCEEEECCC
Confidence 9999997 467777666666654 23788888885
No 288
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.02 E-value=2e+02 Score=24.50 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHhCCCeEEEeCCCCC-------C-----CCcCEEEEcCC
Q 024993 15 HIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGG 46 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~-------l-----~~~d~iil~GG 46 (259)
+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 21 i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 21 AKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45677888999887643211 1 37899999653
No 289
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=30.90 E-value=75 Score=23.80 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=16.0
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCe
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVK 25 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~ 25 (259)
|||+|+ |+ .+..--++.+|++
T Consensus 1 mkIaVI---gD-~dtv~GFrLaGi~ 21 (100)
T PRK03957 1 MKIAVV---GD-RDTVTGFRLAGLT 21 (100)
T ss_pred CEEEEE---eC-HHHHHHHHHcCCC
Confidence 999999 44 5556678888985
No 290
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=30.48 E-value=1.1e+02 Score=24.90 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=38.5
Q ss_pred cCCChHHHHHHHH-hCCC-eEEEeCCCCC-CCCcCEEEEcCCchh--HHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 8 LQGSFNEHIAALK-RLGV-KGVEIRKPDQ-LQNVSSLIIPGGEST--TMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 8 ~~G~~~~~~~~L~-~~G~-~v~~~~~~~~-l~~~d~iil~GG~~~--~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
..||=.-+.+++. .++. ++..+..... +.++|.|+++.+... .... +.+.|++.....+-++|.|..
T Consensus 7 ~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~------~~~fl~~l~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 7 RTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKD------MKEFLKKLKGKKVALFGTAGA 78 (160)
T ss_pred CCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHH------HHHHHHHccCCeEEEEEecCC
Confidence 3577667777764 4566 5555544333 789999999776321 1111 234555543345667777744
No 291
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.01 E-value=3.2e+02 Score=23.54 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=36.2
Q ss_pred EEEEEecC--CChH-H----HHHHHHhCCCeEEEe-CCC-C---------C-C-CCcCEEEEcCCchhHHHHHHhhCCHH
Q 024993 2 VVGVLALQ--GSFN-E----HIAALKRLGVKGVEI-RKP-D---------Q-L-QNVSSLIIPGGESTTMARLAEYHNLF 61 (259)
Q Consensus 2 ki~vl~~~--G~~~-~----~~~~L~~~G~~v~~~-~~~-~---------~-l-~~~d~iil~GG~~~~~~~l~~~~~~~ 61 (259)
||+|+... ..|. . +.+++++.|+.+.++ ... + . + .++|+||+.+...... .
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~---------~ 71 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVST---------A 71 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhh---------h
Confidence 67776522 2232 2 345677889988754 221 1 1 1 3789999865322111 1
Q ss_pred HHHHHHHHcCCcEEEE
Q 024993 62 PALREFVKMGKPVWGT 77 (259)
Q Consensus 62 ~~i~~~~~~g~PiLGI 77 (259)
+.++.+.+.++|+..+
T Consensus 72 ~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 72 AAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 3344445578887654
No 292
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=29.49 E-value=95 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=30.4
Q ss_pred EEEEEecCCChH--HHHHHHHhCCCeEEEeCCCC----------CCCCcCEEEEcC
Q 024993 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRKPD----------QLQNVSSLIIPG 45 (259)
Q Consensus 2 ki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~----------~l~~~d~iil~G 45 (259)
||+|+..+..+. .+.++++++|+++.++...+ .+.++|.++.--
T Consensus 1 ~~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~ 56 (277)
T TIGR00768 1 KLAILYDRIRLDEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRI 56 (277)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEec
Confidence 689998655443 46789999999988875421 144688877633
No 293
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=29.46 E-value=1.4e+02 Score=28.36 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEe---CCC-C--------CCCCcCEEEEcCCch
Q 024993 15 HIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~iil~GG~~ 48 (259)
+...|++.|+++... .+. + .++++|.||.+||.+
T Consensus 225 L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 225 LLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred HHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 446688999987654 222 1 135799999999854
No 294
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=29.35 E-value=86 Score=31.68 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=37.1
Q ss_pred HHHHHHhCCCeEEEeCCC-----CCCCCcCEEEEcCCchhH----HHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~-----~~l~~~d~iil~GG~~~~----~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
++++|.=+-++|+.++-. ..+++.|.||-.|...++ ..|.. ..+...||+++.+|.-++||+
T Consensus 470 ilEaLSGlp~dV~FISFdDi~~~gi~~didViINaGdA~TA~SGG~~W~d--~~iv~~lr~fV~~GGGfIGVG 540 (716)
T PF09508_consen 470 ILEALSGLPFDVEFISFDDIRENGILEDIDVIINAGDAGTAWSGGENWKD--PKIVTALREFVYNGGGFIGVG 540 (716)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHH-S-TT--EEEEEESTTSTTT-GGGGG---HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHhcCCCceeEEecHHHHhhcCCcccCCEEEecCcccccccCccccCC--HHHHHHHHHHHHcCCCEEEcC
Confidence 445555555688777632 245789999998843211 11211 236789999999999999987
No 295
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.95 E-value=81 Score=28.28 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=32.2
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCC--C----CCCCcCEEEEcC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP--D----QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~--~----~l~~~d~iil~G 45 (259)
|||+|+-. |+... +.+.|...|.+|.++... . .+.++|.||+.=
T Consensus 5 m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~v 55 (308)
T PRK14619 5 KTIAILGA-GAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAV 55 (308)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEEC
Confidence 89999954 77775 567888999999887421 1 235789888754
No 296
>PLN02522 ATP citrate (pro-S)-lyase
Probab=28.67 E-value=1.6e+02 Score=29.68 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=44.6
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE---eCCCC--------------CCCCcCEEEEcC---CchhHHHHHHhhCCH
Q 024993 2 VVGVLALQGSFN-EHIAALKRLGVKGVE---IRKPD--------------QLQNVSSLIIPG---GESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~G~~v~~---~~~~~--------------~l~~~d~iil~G---G~~~~~~~l~~~~~~ 60 (259)
+|+|++-.|.+. ++..++.+.|.-+.. +-+.. +=++.+.|++-| +.+.. .+
T Consensus 169 ~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~--------~f 240 (608)
T PLN02522 169 SVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEY--------SL 240 (608)
T ss_pred cEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHH--------HH
Confidence 388998888877 466788887753322 22211 013567877754 43211 23
Q ss_pred HHHHHHHHHcCCcEEEEchhHHH
Q 024993 61 FPALREFVKMGKPVWGTCAGLIF 83 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~Ql 83 (259)
.+++++.. .+|||.+.|.|-.-
T Consensus 241 ~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 241 VEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHhc-CCCCEEEEeccCCC
Confidence 46666644 68999999988753
No 297
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=28.45 E-value=1.8e+02 Score=28.34 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=41.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEe-CCCCCCCCcCEEEEcC---Cch--hHHHHHHhhCCHHHHHHHHHH--cC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI-RKPDQLQNVSSLIIPG---GES--TTMARLAEYHNLFPALREFVK--MG 71 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~-~~~~~l~~~d~iil~G---G~~--~~~~~l~~~~~~~~~i~~~~~--~g 71 (259)
|||||+-. ..|. +++..|+..|.+++.+ ..++.-.+.|.+-+-- |.+ ...+|-.++..+.+.+..+-. +.
T Consensus 1 mkiaiigq-s~fg~~vy~~lrk~gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~~gae 79 (881)
T KOG2452|consen 1 MKIAVIGQ-SLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQALGAE 79 (881)
T ss_pred CeeEEech-hhhhHHHHHHHHhcCceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHhhccc
Confidence 99999953 3444 6788999999998764 4443222344433211 211 111232222233444444432 44
Q ss_pred CcEEEEch
Q 024993 72 KPVWGTCA 79 (259)
Q Consensus 72 ~PiLGIC~ 79 (259)
.-+|-.|.
T Consensus 80 lnvlpfcs 87 (881)
T KOG2452|consen 80 LNVLPFCS 87 (881)
T ss_pred ccccchhh
Confidence 66777774
No 298
>PF14086 DUF4266: Domain of unknown function (DUF4266)
Probab=28.28 E-value=66 Score=21.20 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=19.7
Q ss_pred CccCCCch-HHHHHHHHHHHhcCCCccCCCCCccce
Q 024993 202 HPELTADT-RWHSYFLKMMSEVGEGTSSGGKGTSSG 236 (259)
Q Consensus 202 HPE~~~~~-~i~~nfl~~~~~~~~~~~~~~~~~~~~ 236 (259)
.|++..+. .+...+-..+...||+. +||.|.+.|
T Consensus 11 ~~~M~l~~~~~~~~~~~h~y~srE~a-~gg~g~~GG 45 (50)
T PF14086_consen 11 DPEMALDRDPLEFELNFHIYFSREGA-SGGGGKAGG 45 (50)
T ss_pred CcccCCCccHHHHHHHhhheeccccc-cCCCCCCCc
Confidence 46655443 34445555666778888 666655543
No 299
>PRK09267 flavodoxin FldA; Validated
Probab=28.26 E-value=1.9e+02 Score=23.24 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=26.0
Q ss_pred CEEEEEec--CCChHHHHHHHHh-CC-CeEEEeCC----CCCCCCcCEEEEcC
Q 024993 1 MVVGVLAL--QGSFNEHIAALKR-LG-VKGVEIRK----PDQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~--~G~~~~~~~~L~~-~G-~~v~~~~~----~~~l~~~d~iil~G 45 (259)
|||+|+-. .|+=..+.+++.+ ++ .++.++.. ..++.++|.||+..
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~~~d~vi~g~ 54 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGI 54 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHhhCCEEEEEe
Confidence 88999864 3555555555532 22 24444332 13567899998864
No 300
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.04 E-value=2.4e+02 Score=20.99 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=38.5
Q ss_pred EEEEEecCCChH---HHHHHHHhCC-CeEEEeCCC------CCCCCcCEEEEcC--CchhHHHHHHhhCCHHHHHHHHHH
Q 024993 2 VVGVLALQGSFN---EHIAALKRLG-VKGVEIRKP------DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 2 ki~vl~~~G~~~---~~~~~L~~~G-~~v~~~~~~------~~l~~~d~iil~G--G~~~~~~~l~~~~~~~~~i~~~~~ 69 (259)
||.++-..+++. .....|.+.+ ..+...... ..+.+-|.+|+-. |.... ..+.++.+.+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e---------~~~~~~~a~~ 71 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETAD---------TLAALRLAKE 71 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHH---------HHHHHHHHHH
Confidence 355565544444 2344566665 666655421 1234556655522 43221 2355666667
Q ss_pred cCCcEEEEchh
Q 024993 70 MGKPVWGTCAG 80 (259)
Q Consensus 70 ~g~PiLGIC~G 80 (259)
+|.|+++|+.-
T Consensus 72 ~g~~vi~iT~~ 82 (126)
T cd05008 72 KGAKTVAITNV 82 (126)
T ss_pred cCCeEEEEECC
Confidence 89999999964
No 301
>PRK15029 arginine decarboxylase; Provisional
Probab=27.78 E-value=95 Score=32.02 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=30.9
Q ss_pred CEEEEEecCCC---------hHHHHHHHHhCCCeEEEeCCCCC----C---CCcCEEEE
Q 024993 1 MVVGVLALQGS---------FNEHIAALKRLGVKGVEIRKPDQ----L---QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~---------~~~~~~~L~~~G~~v~~~~~~~~----l---~~~d~iil 43 (259)
|||+|++-.-. ...+.+.|+..|+++....+.++ + .++|+||+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL 59 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF 59 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE
Confidence 99999975332 34566889999999998876431 2 36899887
No 302
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=27.70 E-value=55 Score=29.75 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCCcCEEEE-cCCch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 35 LQNVSSLII-PGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 35 l~~~d~iil-~GG~~-~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
|.++|.||| ||.+- +....| +.+-|++++++ .|+.+||
T Consensus 180 I~~AD~IIlGPgsp~TSI~P~L-----lVpgIreAL~~-a~vV~Vs 219 (297)
T TIGR01819 180 IRKEDNILIGPSNPITSIGPIL-----SLPGIREALRD-KKVVAVS 219 (297)
T ss_pred HHhCCEEEECCCccHHHhhhhc-----CchhHHHHHHc-CCEEEEc
Confidence 457899888 44432 333333 23556666665 9999998
No 303
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.60 E-value=3.8e+02 Score=22.66 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHHHHHhCCCeEEEeCCCC-C----------C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIRKPD-Q----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~-~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.+++++.|+.+.+..... + + ..+|++|+.+...... .+.++.+.++++|+..+.
T Consensus 22 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~---------~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 22 AEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDAL---------DPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHh---------HHHHHHHHHCCCeEEEeC
Confidence 3456677899988864321 1 1 3689999866432211 123444555788888774
No 304
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=27.59 E-value=81 Score=24.47 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCeEEEe---CCC-C--------CCCCcCEEEEcCCch
Q 024993 13 NEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (259)
Q Consensus 13 ~~~~~~L~~~G~~v~~~---~~~-~--------~l~~~d~iil~GG~~ 48 (259)
..+.++|++.|+++... ++. + .++++|.||.+||.+
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 34667899999876543 322 1 124689999999854
No 305
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=27.52 E-value=1.9e+02 Score=21.25 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=23.8
Q ss_pred hHHHHHHHHhCCCeEEEe-CC--CC-------------CCCCcCEEEEcCCch
Q 024993 12 FNEHIAALKRLGVKGVEI-RK--PD-------------QLQNVSSLIIPGGES 48 (259)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~-~~--~~-------------~l~~~d~iil~GG~~ 48 (259)
|....+.|+..|.+|+-- .. ++ .|..+|+|++.+|..
T Consensus 18 f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l~gWe 70 (92)
T PF14359_consen 18 FNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYMLPGWE 70 (92)
T ss_pred HHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEcCCcc
Confidence 445678899999766531 11 11 245899999977743
No 306
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=27.47 E-value=1.1e+02 Score=23.12 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=20.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP 32 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~ 32 (259)
|||+|+ |+ .+..--++.+|+++..+.+.
T Consensus 4 ~kIaVI---GD-~dtv~GFrLaGi~~~~v~~~ 31 (104)
T PRK01395 4 YKIGVV---GD-KDSILPFKALGIDVFPVIDE 31 (104)
T ss_pred eeEEEE---EC-HHHHHHHHHcCCeeEEecCh
Confidence 679999 44 55566788899987666544
No 307
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.89 E-value=2.5e+02 Score=20.41 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=45.9
Q ss_pred EEEEEec-CCChHHHHHHHHhCCCeEEEe--C----CC-----CCCCCcCEEEEcCCc-hhHHHHHHhhCCHHHHHHHHH
Q 024993 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEI--R----KP-----DQLQNVSSLIIPGGE-STTMARLAEYHNLFPALREFV 68 (259)
Q Consensus 2 ki~vl~~-~G~~~~~~~~L~~~G~~v~~~--~----~~-----~~l~~~d~iil~GG~-~~~~~~l~~~~~~~~~i~~~~ 68 (259)
+|+|+-- .+....+.+.+++.|.+.... . .. ..+.++|.||++=+. +..+-+ ..-+.+-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~--------~vk~~ak 72 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMW--------KVKKAAK 72 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHH--------HHHHHHH
Confidence 3666632 123446778899999998888 1 11 245688998885543 322211 1112223
Q ss_pred HcCCcEEEEc-hhHHHHHHhh
Q 024993 69 KMGKPVWGTC-AGLIFLANKA 88 (259)
Q Consensus 69 ~~g~PiLGIC-~G~QlL~~~~ 88 (259)
+.++|+.-.= .|..-|..++
T Consensus 73 k~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 73 KYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred HcCCcEEEECCCCHHHHHHHH
Confidence 4689977654 5766666655
No 308
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=26.73 E-value=1.4e+02 Score=25.04 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=18.8
Q ss_pred CEEEEEec----CCChH----HHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLAL----QGSFN----EHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~----~G~~~----~~~~~L~~~G~~v~~~~ 30 (259)
|||..|.- .|+-. .+.+.+++.|++++++.
T Consensus 1 mki~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~ 38 (207)
T COG0655 1 MKILGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIR 38 (207)
T ss_pred CeeeEEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEE
Confidence 78776652 24322 34456677899998864
No 309
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=26.72 E-value=43 Score=25.73 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=18.6
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~----------~~~~~~~L~~~G~~v~~~ 29 (259)
|||+|| +.|. -.++.++|.+.++++..+
T Consensus 1 m~v~vl-fGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i 38 (117)
T PF01820_consen 1 MRVAVL-FGGRSSEHEVSLRSARNVYEALDKEKYEVIPI 38 (117)
T ss_dssp EEEEEE-EETSSTTHHHHHHHHHHHHHHSHTTTEEEEEE
T ss_pred CeEEEE-eccCchhHHHHHHHHHHHHHHHhhhcceEEEE
Confidence 899999 5452 224567777777777654
No 310
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.68 E-value=2.6e+02 Score=26.83 Aligned_cols=29 Identities=24% Similarity=-0.006 Sum_probs=23.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-..++-.++.++|.+.|++|...+
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVAD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEc
Confidence 58899887777788899999999887754
No 311
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=26.55 E-value=2e+02 Score=23.34 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=41.0
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHH-HHHHHcCCcEEE
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPAL-REFVKMGKPVWG 76 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i-~~~~~~g~PiLG 76 (259)
|||+|=.-+..+. .+.++|++.|++|+-+..... +. +--+++....+ .+.+ ....+.|+-+.|
T Consensus 1 mkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~-~~------~~dYpd~a~~v------a~~V~~g~~~~GIliCG 67 (148)
T PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSY-DA------SVDYPDYAKKV------AEAVVAGEADRGILICG 67 (148)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEcCCCCC-CC------CCCHHHHHHHH------HHHHHcCCCCEEEEEcC
Confidence 8998877655444 467899999998876643211 10 00122221111 1112 122234566666
Q ss_pred EchhHHHHHHhh
Q 024993 77 TCAGLIFLANKA 88 (259)
Q Consensus 77 IC~G~QlL~~~~ 88 (259)
...|+.+.+..+
T Consensus 68 tGiG~siaANK~ 79 (148)
T PRK05571 68 TGIGMSIAANKV 79 (148)
T ss_pred CcHHHHHHHhcC
Confidence 667888877765
No 312
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=25.33 E-value=3.3e+02 Score=26.33 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=47.6
Q ss_pred EEEEEecCCC-----hHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCch--hH-----HHHHHhhC-CHHHHHHHHH
Q 024993 2 VVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TT-----MARLAEYH-NLFPALREFV 68 (259)
Q Consensus 2 ki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~--~~-----~~~l~~~~-~~~~~i~~~~ 68 (259)
+|||+++.+. +....+.+++.|++.++.++. +|.--|+.+.-||.+ .. ..++-... .....|+.+.
T Consensus 187 ~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~-~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~ 265 (445)
T PF14403_consen 187 NIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPR-DLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYR 265 (445)
T ss_pred cEEEEecccCCccchHHHHHHHHHHcCCceEecChH-HceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHh
Confidence 5899998653 334567899999999987654 444456655557643 11 12222222 2334444443
Q ss_pred HcCCcEEEEchhHHHHHHhh
Q 024993 69 KMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 69 ~~g~PiLGIC~G~QlL~~~~ 88 (259)
+..+++.| -+-.|++.+..
T Consensus 266 ~~av~~vg-sfrs~l~hnK~ 284 (445)
T PF14403_consen 266 DGAVCMVG-SFRSQLLHNKI 284 (445)
T ss_pred cCCeEEec-chhhhhhhhhH
Confidence 33444444 55666666543
No 313
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=25.15 E-value=1.1e+02 Score=27.05 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=47.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC-----C---------CCCCCcCEEEEcCCch--hHHHHHHhhCCHHHHH
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK-----P---------DQLQNVSSLIIPGGES--TTMARLAEYHNLFPAL 64 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~-----~---------~~l~~~d~iil~GG~~--~~~~~l~~~~~~~~~i 64 (259)
++|+|..-...-..+.+.|++.|+++..++. . ..+.+||.||+..... ..+..+ .+
T Consensus 19 ~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~--------~~ 90 (266)
T PRK08811 19 WTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLL--------PL 90 (266)
T ss_pred CEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHh--------cc
Confidence 4677877655566788999999998877532 1 1356899999977432 111111 01
Q ss_pred HHHHHcCCcEEEEchhHHHHHHhh
Q 024993 65 REFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 65 ~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+. -.+.|+++|.-+=.--.+..
T Consensus 91 ~~--~~~~~~~AVG~~TA~aL~~~ 112 (266)
T PRK08811 91 QR--PARAHWLSVGEGTARALQAC 112 (266)
T ss_pred cC--ccCCeEEEECHHHHHHHHHc
Confidence 11 14788888886655444444
No 314
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=24.91 E-value=3.1e+02 Score=22.95 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCC
Q 024993 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG 46 (259)
+.+++++.|+.+.++....+ + ..+|+||+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 21 IQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45677788998888743211 1 37899999764
No 315
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=24.82 E-value=3.3e+02 Score=22.66 Aligned_cols=54 Identities=20% Similarity=0.131 Sum_probs=30.9
Q ss_pred HHHHHHhCCCeEEEeCCCC----------CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~----------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.+++++.|+.+.+..... .+ ..+|+||+..+..... +.++.+.++++|++.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~----------~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 21 IQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATS----------PALDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCch----------HHHHHHhhCCCCEEEEe
Confidence 4466778899988864321 11 3689999865432111 12233334678876653
No 316
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=24.74 E-value=1e+02 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=29.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIP 44 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~ 44 (259)
|||++++...... .+...|+..|.++....+.++ + ..+|.+++-
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild 51 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVD 51 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEE
Confidence 8999997644444 355678889988877665321 1 468988873
No 317
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=24.56 E-value=1.1e+02 Score=24.92 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=23.2
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~ 29 (259)
|||+|-.-+..+. .+.+.|++.|+++.-+
T Consensus 1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~ 32 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDF 32 (151)
T ss_pred CcEEEEcCcccHHHHHHHHHHHHHCCCEEEec
Confidence 9999998766555 4678999999988764
No 318
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.41 E-value=3.4e+02 Score=25.47 Aligned_cols=29 Identities=17% Similarity=0.020 Sum_probs=23.4
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||.|+-..++-.+..+.|.+.|++|...+
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D 36 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVID 36 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEc
Confidence 58888887777777788999999887754
No 319
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=24.34 E-value=1.5e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=18.6
Q ss_pred CEEEEEecCC---ChH-----HHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQG---SFN-----EHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G---~~~-----~~~~~L~~~G~~v~~~~ 30 (259)
|||+||.-.- +.. .+.+.+++.|+++++++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~ 38 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVID 38 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999996321 222 23455667799998875
No 320
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=24.29 E-value=4.3e+02 Score=22.24 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=36.9
Q ss_pred EEEEEec--CCChH-H----HHHHHHhCCCeEEEeCC--C-C---------CC--CCcCEEEEcCCchhHHHHHHhhCCH
Q 024993 2 VVGVLAL--QGSFN-E----HIAALKRLGVKGVEIRK--P-D---------QL--QNVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~--~G~~~-~----~~~~L~~~G~~v~~~~~--~-~---------~l--~~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
||+|+-. ...|. . +.+++++.|+++.+... . + .+ ..+|+||+.+......
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~--------- 71 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNL--------- 71 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHh---------
Confidence 5677753 22222 2 34667788998887531 1 1 01 3689998865432221
Q ss_pred HHHHHHHHHcCCcEEEE
Q 024993 61 FPALREFVKMGKPVWGT 77 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGI 77 (259)
.+.++.+.+.++|+..+
T Consensus 72 ~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 72 VPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHCCCeEEEE
Confidence 12233444578998766
No 321
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.00 E-value=4.3e+02 Score=22.14 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=30.6
Q ss_pred HHHHHHh-CCCeEEEeCCCC----------CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 15 HIAALKR-LGVKGVEIRKPD----------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 15 ~~~~L~~-~G~~v~~~~~~~----------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+.+++++ .|+++.+..... .+ ...|++|+.+...... .+.++.+.+.++|+..+
T Consensus 21 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~---------~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 21 MKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAAT---------APIVKAANAAGIPLVYV 87 (272)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhh---------HHHHHHHHHCCCeEEEe
Confidence 4566777 899888864321 11 3789999866432111 12333444567777654
No 322
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=23.97 E-value=1.4e+02 Score=25.89 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=49.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC----C--------CCCCCcCEEEEcCCch--hHHHHHHhhCCHHHHHHH
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK----P--------DQLQNVSSLIIPGGES--TTMARLAEYHNLFPALRE 66 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~----~--------~~l~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~ 66 (259)
|+|+|......-..+...|+..|.++..++. + .++..+|.|+++.... ...+.+.. .+. +
T Consensus 2 ~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~-~~~-~---- 75 (248)
T COG1587 2 MRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKE-QGL-D---- 75 (248)
T ss_pred cEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHh-hcc-c----
Confidence 8899998765566778899999997766431 1 1345689999976432 11222211 000 0
Q ss_pred HHHcCCcEEEEchhHHHHHHhhc
Q 024993 67 FVKMGKPVWGTCAGLIFLANKAV 89 (259)
Q Consensus 67 ~~~~g~PiLGIC~G~QlL~~~~~ 89 (259)
.-.+.++++|.-.-.-..+.+|
T Consensus 76 -~~~~~~i~aVG~~Ta~~l~~~G 97 (248)
T COG1587 76 -ALKNKKIAAVGEKTAEALRKLG 97 (248)
T ss_pred -ccccCeEEEEcHHHHHHHHHhC
Confidence 1136888888866655555554
No 323
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.89 E-value=3.9e+02 Score=22.28 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=35.8
Q ss_pred HHHHHHhCCCeEEEe-CCCC----------C-C-CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 15 HIAALKRLGVKGVEI-RKPD----------Q-L-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~-~~~~----------~-l-~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
+.+++++.|+++.++ .... . + ..+|+||+....+... .+.++++.++|+|+..+=..
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~---------~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSL---------APFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTT---------HHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHH---------HHHHHHHhhcCceEEEEecc
Confidence 446677889998885 3221 1 1 4799999866433221 24455666789999886444
No 324
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.79 E-value=2.4e+02 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=17.2
Q ss_pred EEEEEecCCChHHHHHHHHhC--CCeEEEe
Q 024993 2 VVGVLALQGSFNEHIAALKRL--GVKGVEI 29 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~--G~~v~~~ 29 (259)
||+|+-..++-.+..+.|... |++|...
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~~~~~v~~~ 38 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQPQLTVKVI 38 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcCCCCeEEEE
Confidence 477777766666666666554 3555554
No 325
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=23.63 E-value=39 Score=28.08 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=26.7
Q ss_pred CcCEEEEcC-CchhHHHHHHhhCCH-HHHHHHHHHcCCcEEEEchhHHHHH
Q 024993 37 NVSSLIIPG-GESTTMARLAEYHNL-FPALREFVKMGKPVWGTCAGLIFLA 85 (259)
Q Consensus 37 ~~d~iil~G-G~~~~~~~l~~~~~~-~~~i~~~~~~g~PiLGIC~G~QlL~ 85 (259)
+.|.||+|| +++..-..|..-.++ ++.|.++-..+.+.+|+|+-.|++-
T Consensus 109 ~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~~~~~igla~~~Q~~~ 159 (182)
T PRK10333 109 RLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVE 159 (182)
T ss_pred cCCEEEeCceEECCCCCcccCCcchHHHHHHHhcccCCcEEEEeeeeEEeC
Confidence 469999999 665321222211122 2334433212345799999988753
No 326
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=23.57 E-value=1.1e+02 Score=26.51 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=32.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC-----C-C---------CCCCCcCEEEEcCC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR-----K-P---------DQLQNVSSLIIPGG 46 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~-----~-~---------~~l~~~d~iil~GG 46 (259)
+|+|..-...-..+.+.|++.|+++..++ + + .++.++|.||++.-
T Consensus 5 ~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~ 64 (255)
T PRK05752 5 RLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSK 64 (255)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECH
Confidence 67887655555678899999999887643 1 1 24578999999773
No 327
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=23.50 E-value=1.3e+02 Score=22.39 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=18.3
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVE 28 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~ 28 (259)
|||+|+ |+ .+..--++..|++..+
T Consensus 1 mkIaVI---GD-~dtv~GFrLaGi~~~~ 24 (100)
T PRK02228 1 MEIAVI---GS-PEFTTGFRLAGIRKVY 24 (100)
T ss_pred CEEEEE---eC-HHHHHHHHHcCCceEE
Confidence 999999 45 5556678889997554
No 328
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=23.40 E-value=2.8e+02 Score=24.23 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=40.4
Q ss_pred CE-EEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCch--hHHHHHHhhCCHHHH--HHHHHHcCCcEE
Q 024993 1 MV-VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPA--LREFVKMGKPVW 75 (259)
Q Consensus 1 mk-i~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~--~~~~~l~~~~~~~~~--i~~~~~~g~PiL 75 (259)
|| ++|-+++|++....+.+..+.- .++|.+++.|... ..-+... ..+. +....+.+.|++
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~-----------~~~D~lviaGDlt~~~~~~~~~----~~~~~~~e~l~~~~~~v~ 68 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAAD-----------IRADLLVIAGDLTYFHFGPKEV----AEELNKLEALKELGIPVL 68 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhh-----------ccCCEEEEecceehhhcCchHH----HHhhhHHHHHHhcCCeEE
Confidence 77 5566678998877777664431 1578888888633 1100000 0111 333344688877
Q ss_pred EE---chhHHHHHH
Q 024993 76 GT---CAGLIFLAN 86 (259)
Q Consensus 76 GI---C~G~QlL~~ 86 (259)
++ |-..++...
T Consensus 69 avpGNcD~~~v~~~ 82 (226)
T COG2129 69 AVPGNCDPPEVIDV 82 (226)
T ss_pred EEcCCCChHHHHHH
Confidence 65 777776553
No 329
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=23.30 E-value=1.6e+02 Score=25.97 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=29.1
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEeCCCCC------CCCcCEEEEc
Q 024993 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIP 44 (259)
Q Consensus 1 mki~vl~~~G~----------~~~~~~~L~~~G~~v~~~~~~~~------l~~~d~iil~ 44 (259)
|||+|+. .|. -..+.++|++.|+++..+...++ ..++|.++..
T Consensus 5 ~~v~~~~-g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 5 GKVAVLM-GGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred cEEEEEe-CCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 3799885 332 23567899999999998854322 1368988763
No 330
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.17 E-value=3.3e+02 Score=25.66 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=20.1
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 3 VGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 3 i~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
|+|+-..++-.++.+.|.+.|++|...+
T Consensus 9 ~~v~G~G~sG~s~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 9 HIVVGLGKTGLSVVRFLARQGIPFAVMD 36 (448)
T ss_pred EEEEeecHhHHHHHHHHHhCCCeEEEEe
Confidence 6667666666677788888888776654
No 331
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=23.03 E-value=5.3e+02 Score=22.75 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred CEEEEEecCCChHH-HHHHHHh--CCCeEEEeCC--C-------------------C-CCCCcCEEEEcCCchhHHHHHH
Q 024993 1 MVVGVLALQGSFNE-HIAALKR--LGVKGVEIRK--P-------------------D-QLQNVSSLIIPGGESTTMARLA 55 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~--~G~~v~~~~~--~-------------------~-~l~~~d~iil~GG~~~~~~~l~ 55 (259)
|||+|+-. |.... +.+.|.. .++++..+.+ + + -+.++|.|++.-+....
T Consensus 7 irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h----- 80 (271)
T PRK13302 7 LRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL----- 80 (271)
T ss_pred eEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-----
Confidence 67999965 65553 4566654 3667654311 1 0 12468998887653321
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 56 EYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
.+.+.+++++|++++-.+.|
T Consensus 81 -----~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 81 -----RAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred -----HHHHHHHHHcCCcEEEecch
Confidence 12233444566666655554
No 332
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.85 E-value=4.5e+02 Score=22.09 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=21.3
Q ss_pred HHHHHHhCCCeEEEeCCCC----------C-C-CCcCEEEEcCC
Q 024993 15 HIAALKRLGVKGVEIRKPD----------Q-L-QNVSSLIIPGG 46 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~----------~-l-~~~d~iil~GG 46 (259)
+.+.+++.|+++.++.... . + .++|++|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 21 VKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3456777899988865321 1 1 47999998664
No 333
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.71 E-value=4.7e+02 Score=22.46 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=32.4
Q ss_pred HHHHHHhCCCeEEEeCCCC----------CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 15 HIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~----------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+.+++++.|+.+.+..... .+ .++|+||+.+...+.. .+.++++.++++|+..+
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~---------~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 21 FEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEAL---------ASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhH---------HHHHHHHHHCCCCEEEE
Confidence 4566778899988875421 11 3799999876432211 12334444568887766
No 334
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.49 E-value=3.2e+02 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.096 Sum_probs=15.8
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEe
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEI 29 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~ 29 (259)
||+|+-..++-.+..+.|.+.|++|...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~ 29 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVS 29 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 5666655444445556666666665554
No 335
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=22.41 E-value=88 Score=29.09 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=23.7
Q ss_pred CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHH
Q 024993 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85 (259)
Q Consensus 37 ~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~ 85 (259)
..|.|++-||..++ +.+-+.++...|+|||-.|--+-+
T Consensus 100 gVdlIvfaGGDGTa-----------rDVa~av~~~vPvLGipaGvk~~S 137 (355)
T COG3199 100 GVDLIVFAGGDGTA-----------RDVAEAVGADVPVLGIPAGVKNYS 137 (355)
T ss_pred CceEEEEeCCCccH-----------HHHHhhccCCCceEeeccccceec
Confidence 36777777765443 122233356899999998865433
No 336
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.35 E-value=3.8e+02 Score=22.44 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=21.3
Q ss_pred HHHHHHhCCCeEEEeCCCC----------CC--CCcCEEEEcCC
Q 024993 15 HIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~----------~l--~~~d~iil~GG 46 (259)
+.+++++.|+.+.+..... .+ .+.|++|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 21 FQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4566788899988865321 11 26899998664
No 337
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=22.33 E-value=2.1e+02 Score=22.33 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=21.4
Q ss_pred CCChHHHHHHH----HhCCCeEEEeCC---CCCCCCcCEEEEcCC
Q 024993 9 QGSFNEHIAAL----KRLGVKGVEIRK---PDQLQNVSSLIIPGG 46 (259)
Q Consensus 9 ~G~~~~~~~~L----~~~G~~v~~~~~---~~~l~~~d~iil~GG 46 (259)
.|+=..+.++| ...+..+.+... ..++.++|.||+.++
T Consensus 8 ~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~gsp 52 (143)
T PF12724_consen 8 TGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIFGSP 52 (143)
T ss_pred CchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEEEEE
Confidence 45544444444 333444444332 246789999999875
No 338
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.24 E-value=4.7e+02 Score=21.92 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=36.7
Q ss_pred EEEEEecC-CC--hHH----HHHHHHhCCCeEEEeCC--C-C---------CC--CCcCEEEEcCCchhHHHHHHhhCCH
Q 024993 2 VVGVLALQ-GS--FNE----HIAALKRLGVKGVEIRK--P-D---------QL--QNVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~-G~--~~~----~~~~L~~~G~~v~~~~~--~-~---------~l--~~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
||+|+.-. .+ +.. +.+++++.|+.+.+... . + .+ .++|++|+.+......
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~--------- 71 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKAL--------- 71 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhh---------
Confidence 67877532 12 222 34667788999888642 1 1 11 3789999976432211
Q ss_pred HHHHHHHHHcCCcEEEE
Q 024993 61 FPALREFVKMGKPVWGT 77 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGI 77 (259)
.+.++.+.+.++|+..+
T Consensus 72 ~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 72 VPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 12333444456776655
No 339
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=21.92 E-value=1.5e+02 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=23.4
Q ss_pred EEEEecCCChHHHHHHHHhCCCeEEEeCCC
Q 024993 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKP 32 (259)
Q Consensus 3 i~vl~~~G~~~~~~~~L~~~G~~v~~~~~~ 32 (259)
++++.-+++|..+.+.|++.|.+|.++..+
T Consensus 109 ~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~ 138 (160)
T TIGR00288 109 VALVTRDADFLPVINKAKENGKETIVIGAE 138 (160)
T ss_pred EEEEeccHhHHHHHHHHHHCCCEEEEEeCC
Confidence 456666678999999999889888887653
No 340
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=21.79 E-value=4.1e+02 Score=21.78 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+.++++..|+++.+.....+ + ..+|++|+.+..+... . ++.+.++++|+..+
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~----------~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 21 IEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDE----------L-LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchH----------H-HHHHHHcCCCEEEe
Confidence 44566778988887654321 1 3789999977643321 1 33444578887766
No 341
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=21.75 E-value=84 Score=28.94 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCCcCEEEE-cCCch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 35 LQNVSSLII-PGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 35 l~~~d~iil-~GG~~-~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
+.++|.||+ ||++- +.+..|.- .++.+.|++ ...|+.+||.
T Consensus 187 I~~AD~IviGPgSl~TSIlP~Lll-p~I~eaLr~---~~ap~i~v~n 229 (323)
T COG0391 187 IKEADLIVIGPGSLFTSILPILLL-PGIAEALRE---TVAPIVYVCN 229 (323)
T ss_pred HHhCCEEEEcCCccHhhhchhhch-hHHHHHHHh---CCCCEEEecc
Confidence 458999888 55542 33333321 234455554 6799999993
No 342
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=21.62 E-value=2.2e+02 Score=26.75 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEeC---CC-C--------CCCCcCEEEEcCCch
Q 024993 15 HIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~---~~-~--------~l~~~d~iil~GG~~ 48 (259)
+..+|++.|+++..+. +. + .++++|.||.+||.+
T Consensus 200 l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 200 LAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred HHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 4467888999877643 22 1 124699999999854
No 343
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.55 E-value=2.8e+02 Score=22.43 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=21.8
Q ss_pred HHHHHHhCCCeEEEeC---CCCC-----C-CCcCEEEEcC
Q 024993 15 HIAALKRLGVKGVEIR---KPDQ-----L-QNVSSLIIPG 45 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~---~~~~-----l-~~~d~iil~G 45 (259)
+.++|+..|++|.... .+++ + .+.|.|.+++
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe
Confidence 4578999999998753 3322 1 4788888877
No 344
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.54 E-value=4.1e+02 Score=22.35 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEEeCCC---C-------CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 15 HIAALKRLGVKGVEIRKP---D-------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~---~-------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+.+++++.|+.+.+.... + .+ ..+|++|+.+........ ..+.++++.+.++|+.-+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~------~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 21 IEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHA------DHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccc------hhHHHHHHHhCCCCEEEE
Confidence 456777899988775421 1 11 368999986532111100 123344555578887766
No 345
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.41 E-value=6.1e+02 Score=22.92 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHhCCCeEEEeCCCC-----------CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 15 HIAALKRLGVKGVEIRKPD-----------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~-----------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+.++.++.|+++.+..+.+ .+ .++|+|++..-.+.. +.+.++++.++|+|+.-+
T Consensus 45 i~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~a---------l~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 45 AKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDG---------LCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH---------HHHHHHHHHHCCCeEEEe
Confidence 4566778899988743211 11 479999996432221 124556666678887655
No 346
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=21.37 E-value=2.5e+02 Score=27.49 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=27.8
Q ss_pred CEEEEEecCCChHHHHHHHHhCCC--eEEEeCC-------C---------CC-----CCCcCEEEEcC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGV--KGVEIRK-------P---------DQ-----LQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~--~v~~~~~-------~---------~~-----l~~~d~iil~G 45 (259)
|||+++.-.=....+.++++..+. +|.+... + .. +..||.|++||
T Consensus 1 m~il~vTG~lA~~~v~~~~~~~~~~~~V~~~~v~VAA~~tp~~i~~~l~~~~~~~~~~~~yD~ilvpG 68 (499)
T TIGR00284 1 MKVLLITGRLAKGLIEGILKESDQEAEVIVLNVHVAGMLSTKTIAKILKSRRDLLERARSVDILLIPG 68 (499)
T ss_pred CeEEEEcchhhHHHHHHHHhcCCCceEEEEcCCeEEEecCHHHHHHHhhcccccccccCCCcEEEeCC
Confidence 899998422245556677776665 4444321 1 11 23589999999
No 347
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=21.33 E-value=54 Score=27.06 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=26.8
Q ss_pred CcCEEEEcC-CchhHHHHHHhhCCH-HHHHHHHHHcCCcEEEEchhHHHHHH
Q 024993 37 NVSSLIIPG-GESTTMARLAEYHNL-FPALREFVKMGKPVWGTCAGLIFLAN 86 (259)
Q Consensus 37 ~~d~iil~G-G~~~~~~~l~~~~~~-~~~i~~~~~~g~PiLGIC~G~QlL~~ 86 (259)
+.|.+|+|+ +++.....+..-.++ ++.+... ....+.+|+|+-.|++..
T Consensus 115 ~idlvivP~lafD~~G~RLG~GgGyYDR~L~~~-~~~~~~igv~~~~q~~~~ 165 (181)
T TIGR02727 115 EIDLIIVPGVAFDRRGYRLGYGGGYYDRFLANL-KGKTVVVGLAFDFQLVDE 165 (181)
T ss_pred cCCEEEeCceEEcCCCccccCCcchHHHHHHhc-ccCCCEEEEEecceeeCc
Confidence 458999999 765332222221222 2333332 223448999988887543
No 348
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.21 E-value=3.1e+02 Score=20.68 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=36.5
Q ss_pred EEEEecCCChH---HHHHHHHhC-CCeEEEeCCC-------CCCCCcCEEEE-cC-CchhHHHHHHhhCCHHHHHHHHHH
Q 024993 3 VGVLALQGSFN---EHIAALKRL-GVKGVEIRKP-------DQLQNVSSLII-PG-GESTTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 3 i~vl~~~G~~~---~~~~~L~~~-G~~v~~~~~~-------~~l~~~d~iil-~G-G~~~~~~~l~~~~~~~~~i~~~~~ 69 (259)
|.++-...++. .....|.+. |..+....+. ..+.+-|.+|+ +- |.... ..+.++.+.+
T Consensus 2 I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~---------~~~~~~~a~~ 72 (120)
T cd05710 2 VFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKE---------TVAAAKFAKE 72 (120)
T ss_pred EEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChH---------HHHHHHHHHH
Confidence 45554433443 233455655 6666654431 12345576555 33 43222 2345556666
Q ss_pred cCCcEEEEchh
Q 024993 70 MGKPVWGTCAG 80 (259)
Q Consensus 70 ~g~PiLGIC~G 80 (259)
+|.|+++|+..
T Consensus 73 ~g~~vi~iT~~ 83 (120)
T cd05710 73 KGATVIGLTDD 83 (120)
T ss_pred cCCeEEEEECC
Confidence 89999999853
No 349
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=21.00 E-value=5.2e+02 Score=22.57 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCC
Q 024993 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG 46 (259)
.+.++++..|+.+.+.....+ + ..+|+||+.+.
T Consensus 19 ~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 19 IFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred HHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 355677888999887643211 1 36899999764
No 350
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.87 E-value=3.5e+02 Score=19.86 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=27.7
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCC----------------CCCCCcCEEEEcCCchh
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP----------------DQLQNVSSLIIPGGEST 49 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~----------------~~l~~~d~iil~GG~~~ 49 (259)
+|+|+-. |.... -.+.|.+.|++++++++. +++++++.++...+.+.
T Consensus 9 ~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~ 72 (103)
T PF13241_consen 9 RVLVVGG-GPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE 72 (103)
T ss_dssp EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence 4566632 33332 235677789999998654 14567888888776543
No 351
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=20.64 E-value=5.7e+02 Score=22.24 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=18.5
Q ss_pred CEEEEEecCCChHH-HHHHHHh-CCCeEEE
Q 024993 1 MVVGVLALQGSFNE-HIAALKR-LGVKGVE 28 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~-~G~~v~~ 28 (259)
|||+|+-..|.... +.+.+.. .+++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elva 31 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVA 31 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 79999976576553 5566654 4666665
No 352
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=20.60 E-value=3.8e+02 Score=23.04 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=40.5
Q ss_pred EEEEEecCCChH---HHHHHHHhCCCeEEEeCCC-------CCCCCcCEEEEcC--CchhHHHHHHhhCCHHHHHHHHHH
Q 024993 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 2 ki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~~-------~~l~~~d~iil~G--G~~~~~~~l~~~~~~~~~i~~~~~ 69 (259)
||.|.-...+.. ...+.|.+.|..+..+.+. ..+..-|.+|+-. |.... +.+.++.+.+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~---------~~~~~~~a~~ 72 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLE---------LLNLIPHLKR 72 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHH---------HHHHHHHHHH
Confidence 455554433332 2344566788877765432 1244557765522 43221 2456667777
Q ss_pred cCCcEEEEchhH
Q 024993 70 MGKPVWGTCAGL 81 (259)
Q Consensus 70 ~g~PiLGIC~G~ 81 (259)
+|.|+++||...
T Consensus 73 ~g~~ii~iT~~~ 84 (268)
T TIGR00393 73 LSHKIIAFTGSP 84 (268)
T ss_pred cCCcEEEEECCC
Confidence 899999999653
No 353
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=20.23 E-value=4.8e+02 Score=21.31 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=36.5
Q ss_pred EEEEEecC--CChHH-----HHHHHHhCCCeEE---EeCCCC------------CCCCcCEEEEcC----CchhHHHHHH
Q 024993 2 VVGVLALQ--GSFNE-----HIAALKRLGVKGV---EIRKPD------------QLQNVSSLIIPG----GESTTMARLA 55 (259)
Q Consensus 2 ki~vl~~~--G~~~~-----~~~~L~~~G~~v~---~~~~~~------------~l~~~d~iil~G----G~~~~~~~l~ 55 (259)
||+|+..+ ....+ -.+.|++.|.+.. +++.|- .-.+||+||-.| |.-+..+...
T Consensus 14 riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va 93 (152)
T COG0054 14 RIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVA 93 (152)
T ss_pred eEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHH
Confidence 67888643 11111 2356667776443 554331 124799988777 3222223332
Q ss_pred hhCCHHHHHHHHHHcCCcEE
Q 024993 56 EYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiL 75 (259)
.+ -.....+-.++.++||.
T Consensus 94 ~~-~~~gl~~vsl~~~~PV~ 112 (152)
T COG0054 94 NE-VARGLMDVSLETGVPVT 112 (152)
T ss_pred HH-HHHHHHHHHHhhCCCeE
Confidence 21 11234444556788864
No 354
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.08 E-value=5.1e+02 Score=21.49 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=21.4
Q ss_pred HHHHHHhCCCeEEEeCCCC----------CC--CCcCEEEEcCC
Q 024993 15 HIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~----------~l--~~~d~iil~GG 46 (259)
+.++++..|+++.+..... .+ .++|+||+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 21 ISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred HHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 4456788899888764321 11 37999999774
Done!