Query 024993
Match_columns 259
No_of_seqs 170 out of 1722
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:05:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gud_A Imidazole glycerol phos 100.0 3E-33 1E-37 238.4 11.6 192 2-220 4-205 (211)
2 2nv0_A Glutamine amidotransfer 100.0 3.4E-30 1.2E-34 217.2 16.2 189 1-224 2-192 (196)
3 2ywj_A Glutamine amidotransfer 100.0 2.4E-30 8.3E-35 216.3 14.8 181 1-220 1-184 (186)
4 2iss_D Glutamine amidotransfer 100.0 2.3E-30 7.8E-35 220.6 13.6 184 1-219 21-207 (208)
5 2ywd_A Glutamine amidotransfer 100.0 1.3E-29 4.4E-34 212.4 14.7 185 1-220 3-190 (191)
6 2abw_A PDX2 protein, glutamina 100.0 1.4E-29 4.7E-34 218.3 11.8 202 1-222 4-216 (227)
7 1q7r_A Predicted amidotransfer 100.0 2E-29 6.7E-34 216.5 12.4 188 1-223 24-213 (219)
8 1ka9_H Imidazole glycerol phos 100.0 5.3E-29 1.8E-33 210.7 14.6 188 1-219 3-200 (200)
9 1gpw_B Amidotransferase HISH; 100.0 3.3E-29 1.1E-33 211.9 12.5 189 1-222 1-200 (201)
10 1jvn_A Glutamine, bifunctional 99.9 1.6E-27 5.5E-32 230.1 15.9 196 1-219 5-215 (555)
11 2a9v_A GMP synthase; structura 99.9 1.4E-27 4.7E-32 204.3 10.1 179 1-224 14-204 (212)
12 1qdl_B Protein (anthranilate s 99.9 1.5E-26 5.3E-31 195.0 14.1 175 1-217 1-193 (195)
13 3d54_D Phosphoribosylformylgly 99.9 4.8E-26 1.6E-30 193.5 13.7 186 1-220 3-212 (213)
14 1wl8_A GMP synthase [glutamine 99.9 2.3E-26 7.7E-31 192.8 11.3 175 1-221 1-188 (189)
15 3l7n_A Putative uncharacterize 99.9 9.2E-26 3.2E-30 195.8 11.0 181 1-222 1-197 (236)
16 1i1q_B Anthranilate synthase c 99.9 4E-25 1.4E-29 185.8 13.3 173 1-220 1-190 (192)
17 3fij_A LIN1909 protein; 11172J 99.9 1.2E-24 4E-29 190.9 14.6 183 14-224 32-245 (254)
18 3m3p_A Glutamine amido transfe 99.9 2.3E-25 7.8E-30 195.1 8.9 175 1-220 4-192 (250)
19 2vpi_A GMP synthase; guanine m 99.9 1.8E-25 6.1E-30 192.0 7.6 172 2-220 26-211 (218)
20 1o1y_A Conserved hypothetical 99.9 8.9E-25 3.1E-29 190.1 10.8 175 1-222 13-203 (239)
21 3tqi_A GMP synthase [glutamine 99.9 6.6E-25 2.2E-29 210.7 10.1 170 2-217 12-202 (527)
22 1a9x_B Carbamoyl phosphate syn 99.9 1.4E-23 4.8E-28 193.4 14.3 170 1-223 191-377 (379)
23 3uow_A GMP synthetase; structu 99.9 1.7E-23 5.9E-28 201.9 12.9 200 1-216 8-226 (556)
24 1gpm_A GMP synthetase, XMP ami 99.9 2.3E-24 7.9E-29 206.9 6.3 171 1-217 8-199 (525)
25 2ywb_A GMP synthase [glutamine 99.9 4.3E-24 1.5E-28 204.1 7.5 172 2-220 1-185 (503)
26 3r75_A Anthranilate/para-amino 99.9 1.3E-23 4.4E-28 205.6 9.5 182 1-226 447-640 (645)
27 2w7t_A CTP synthetase, putativ 99.9 4.9E-23 1.7E-27 182.5 7.0 205 2-231 10-266 (273)
28 2vxo_A GMP synthase [glutamine 99.9 2E-22 6.9E-27 198.6 4.7 168 2-216 31-211 (697)
29 1l9x_A Gamma-glutamyl hydrolas 99.8 9.9E-21 3.4E-25 170.9 13.7 189 2-226 32-283 (315)
30 2v4u_A CTP synthase 2; pyrimid 99.8 3.6E-20 1.2E-24 165.3 5.2 200 1-224 26-279 (289)
31 1vco_A CTP synthetase; tetrame 99.8 2.2E-19 7.4E-24 172.1 6.7 197 9-224 313-548 (550)
32 3nva_A CTP synthase; rossman f 99.7 1.1E-17 3.9E-22 158.3 8.8 195 2-221 295-534 (535)
33 2vdj_A Homoserine O-succinyltr 99.7 2.7E-16 9.3E-21 140.7 13.6 178 1-220 36-252 (301)
34 2h2w_A Homoserine O-succinyltr 99.7 3E-16 1E-20 140.9 13.3 176 1-219 48-262 (312)
35 1s1m_A CTP synthase; CTP synth 99.7 1.6E-17 5.4E-22 159.1 3.4 77 9-90 302-391 (545)
36 3ugj_A Phosphoribosylformylgly 99.4 8E-13 2.7E-17 137.2 15.2 86 1-87 1048-1152(1303)
37 1fy2_A Aspartyl dipeptidase; s 99.3 8.9E-13 3.1E-17 113.6 5.3 107 2-109 33-157 (229)
38 3l4e_A Uncharacterized peptida 99.2 1.9E-11 6.4E-16 103.7 5.7 105 2-107 29-159 (206)
39 1oi4_A Hypothetical protein YH 98.9 7E-09 2.4E-13 86.5 9.3 85 1-87 24-134 (193)
40 3l18_A Intracellular protease 98.8 1.8E-08 6.1E-13 81.8 9.0 85 1-87 3-111 (168)
41 2rk3_A Protein DJ-1; parkinson 98.6 8.8E-08 3E-12 79.8 8.5 85 2-87 5-115 (197)
42 4hcj_A THIJ/PFPI domain protei 98.6 6.7E-08 2.3E-12 79.8 6.5 72 14-87 26-117 (177)
43 2ab0_A YAJL; DJ-1/THIJ superfa 98.6 1.8E-07 6.3E-12 78.5 9.3 86 1-87 3-116 (205)
44 4e08_A DJ-1 beta; flavodoxin-l 98.6 3.3E-07 1.1E-11 75.8 10.5 85 2-87 7-116 (190)
45 2vrn_A Protease I, DR1199; cys 98.6 1.7E-07 5.8E-12 77.4 8.2 86 1-87 10-124 (190)
46 2fex_A Conserved hypothetical 98.5 3.9E-07 1.3E-11 75.3 10.0 84 1-87 2-110 (188)
47 3er6_A Putative transcriptiona 98.4 4.1E-07 1.4E-11 76.7 6.9 86 2-87 10-124 (209)
48 3cne_A Putative protease I; st 98.3 7.3E-07 2.5E-11 72.7 6.8 86 1-87 3-120 (175)
49 3efe_A THIJ/PFPI family protei 98.3 1.6E-06 5.5E-11 73.2 8.8 83 2-87 7-121 (212)
50 3ot1_A 4-methyl-5(B-hydroxyeth 98.3 1.1E-06 3.7E-11 74.0 7.7 85 2-87 11-121 (208)
51 3l3b_A ES1 family protein; ssg 98.3 1.7E-06 5.8E-11 74.8 9.0 87 2-88 25-168 (242)
52 3mgk_A Intracellular protease/ 98.3 9.5E-07 3.3E-11 74.6 7.1 85 1-87 5-113 (211)
53 3noq_A THIJ/PFPI family protei 98.3 1.3E-06 4.6E-11 74.8 7.9 85 1-87 6-113 (231)
54 1vhq_A Enhancing lycopene bios 98.3 1.3E-06 4.4E-11 74.8 7.4 88 1-88 7-150 (232)
55 3f5d_A Protein YDEA; unknow pr 98.3 2E-06 7E-11 72.4 7.9 82 2-87 5-109 (206)
56 3ej6_A Catalase-3; heme, hydro 98.3 1.4E-06 4.7E-11 85.1 7.5 88 1-88 538-647 (688)
57 3uk7_A Class I glutamine amido 98.2 3E-06 1E-10 77.9 9.3 85 1-87 13-137 (396)
58 1u9c_A APC35852; structural ge 98.2 1.7E-06 5.8E-11 73.2 7.0 85 2-87 7-138 (224)
59 4gdh_A DJ-1, uncharacterized p 98.2 2.3E-06 8E-11 71.3 7.7 85 1-86 5-122 (194)
60 3uk7_A Class I glutamine amido 98.2 3.3E-06 1.1E-10 77.6 8.8 85 1-87 206-330 (396)
61 3ttv_A Catalase HPII; heme ori 98.2 1.6E-06 5.3E-11 85.3 6.0 85 1-88 601-709 (753)
62 3ewn_A THIJ/PFPI family protei 98.1 7E-06 2.4E-10 71.3 8.7 85 1-87 24-133 (253)
63 3gra_A Transcriptional regulat 98.1 4.5E-06 1.5E-10 69.9 6.2 83 1-87 6-117 (202)
64 3fse_A Two-domain protein cont 98.1 1.3E-05 4.5E-10 73.2 9.5 85 1-87 11-121 (365)
65 1sy7_A Catalase 1; heme oxidat 98.1 1.1E-05 3.7E-10 79.6 9.4 87 1-88 535-645 (715)
66 1rw7_A YDR533CP; alpha-beta sa 98.1 6E-06 2E-10 71.1 6.5 51 37-88 98-148 (243)
67 3n7t_A Macrophage binding prot 98.0 9.4E-06 3.2E-10 70.3 7.0 50 37-87 105-154 (247)
68 3kkl_A Probable chaperone prot 98.0 1E-05 3.5E-10 69.9 7.0 50 37-87 98-147 (244)
69 2iuf_A Catalase; oxidoreductas 98.0 5.5E-06 1.9E-10 81.0 5.8 87 1-87 530-648 (688)
70 1n57_A Chaperone HSP31, protei 97.7 3.2E-05 1.1E-09 68.5 6.0 52 36-88 144-195 (291)
71 3bhn_A THIJ/PFPI domain protei 97.6 4.6E-05 1.6E-09 65.5 4.0 83 1-87 21-128 (236)
72 3en0_A Cyanophycinase; serine 97.4 9.2E-05 3.1E-09 65.6 4.5 86 2-88 58-162 (291)
73 2gk3_A Putative cytoplasmic pr 95.9 0.024 8.1E-07 48.8 7.9 72 7-78 37-125 (256)
74 1z0s_A Probable inorganic poly 94.3 0.053 1.8E-06 47.5 5.4 70 1-81 30-101 (278)
75 2i2c_A Probable inorganic poly 91.1 0.34 1.2E-05 41.8 6.0 64 1-81 1-71 (272)
76 4e5v_A Putative THUA-like prot 89.8 1.8 6.3E-05 37.5 9.6 74 2-81 6-96 (281)
77 3rht_A (gatase1)-like protein; 88.6 1.1 3.7E-05 38.6 7.0 73 1-78 4-86 (259)
78 1u0t_A Inorganic polyphosphate 88.1 1.4 4.9E-05 38.5 7.7 69 2-80 6-108 (307)
79 2an1_A Putative kinase; struct 83.5 0.73 2.5E-05 39.9 3.3 70 2-81 7-97 (292)
80 2zuv_A Lacto-N-biose phosphory 81.4 1.9 6.6E-05 42.0 5.6 62 15-78 473-543 (759)
81 3tty_A Beta-GAL, beta-galactos 79.9 4.9 0.00017 39.1 8.1 58 14-78 429-486 (675)
82 1eiw_A Hypothetical protein MT 78.6 4.3 0.00015 30.2 5.7 57 12-78 17-74 (111)
83 3eag_A UDP-N-acetylmuramate:L- 74.0 11 0.00039 32.7 8.2 30 1-30 5-35 (326)
84 3kbq_A Protein TA0487; structu 73.9 1.9 6.4E-05 34.8 2.7 81 1-88 4-106 (172)
85 1t0b_A THUA-like protein; treh 71.1 5.4 0.00018 33.9 5.1 60 16-80 38-106 (252)
86 4hv4_A UDP-N-acetylmuramate--L 70.0 13 0.00046 34.4 8.1 77 2-79 24-129 (494)
87 1yt5_A Inorganic polyphosphate 67.9 2.8 9.6E-05 35.6 2.7 68 1-81 1-74 (258)
88 2pln_A HP1043, response regula 62.7 21 0.00072 25.6 6.5 69 1-80 19-95 (137)
89 2qv7_A Diacylglycerol kinase D 61.7 21 0.00071 31.2 7.2 78 2-89 26-125 (337)
90 3pfn_A NAD kinase; structural 61.5 27 0.00093 31.3 8.0 70 2-81 40-142 (365)
91 1jg7_A BGT, DNA beta-glucosylt 60.9 8 0.00027 32.7 4.0 44 1-44 1-65 (351)
92 1f4p_A Flavodoxin; electron tr 59.9 20 0.00069 26.7 6.1 44 1-44 1-55 (147)
93 3hly_A Flavodoxin-like domain; 59.5 13 0.00045 28.7 5.0 45 1-45 1-59 (161)
94 3lk7_A UDP-N-acetylmuramoylala 59.2 19 0.00064 32.9 6.7 29 2-30 11-39 (451)
95 2raf_A Putative dinucleotide-b 58.7 50 0.0017 26.4 8.7 72 1-81 20-93 (209)
96 3f6r_A Flavodoxin; FMN binding 58.1 28 0.00095 26.0 6.6 45 1-45 2-57 (148)
97 3iwt_A 178AA long hypothetical 58.1 16 0.00055 28.8 5.4 48 1-48 16-92 (178)
98 2r47_A Uncharacterized protein 56.5 0.83 2.8E-05 36.3 -2.6 38 36-79 83-125 (157)
99 3b6i_A Flavoprotein WRBA; flav 54.3 18 0.00063 28.3 5.1 45 1-45 2-76 (198)
100 1y5e_A Molybdenum cofactor bio 54.3 14 0.00047 29.2 4.3 48 1-48 14-83 (169)
101 2ov6_A V-type ATP synthase sub 54.2 12 0.00041 27.1 3.6 28 1-32 1-29 (101)
102 2hqr_A Putative transcriptiona 51.2 29 0.00099 27.4 6.0 78 1-88 1-87 (223)
103 2a5l_A Trp repressor binding p 50.8 22 0.00075 27.9 5.1 31 1-31 6-42 (200)
104 1mkz_A Molybdenum cofactor bio 49.9 15 0.00052 29.0 3.9 47 1-47 11-79 (172)
105 3pzy_A MOG; ssgcid, seattle st 49.2 16 0.00055 28.8 3.9 48 1-48 8-77 (164)
106 3soz_A ORF 245 protein, cytopl 48.7 20 0.00069 30.3 4.7 65 14-78 37-118 (248)
107 3l49_A ABC sugar (ribose) tran 47.8 1E+02 0.0035 25.0 9.1 68 2-78 7-93 (291)
108 2bon_A Lipid kinase; DAG kinas 47.6 48 0.0016 28.8 7.2 78 2-89 31-129 (332)
109 2d00_A V-type ATP synthase sub 47.5 12 0.00042 27.5 2.8 28 1-32 4-31 (109)
110 2is8_A Molybdopterin biosynthe 46.9 10 0.00035 29.8 2.4 48 1-48 2-73 (164)
111 4b4o_A Epimerase family protei 46.6 35 0.0012 28.5 6.0 45 1-45 1-59 (298)
112 3ff4_A Uncharacterized protein 46.4 75 0.0026 23.5 7.1 81 3-83 7-117 (122)
113 2pjk_A 178AA long hypothetical 45.7 26 0.0009 27.9 4.7 48 1-48 16-92 (178)
114 3lwz_A 3-dehydroquinate dehydr 45.6 67 0.0023 25.2 6.8 37 12-48 34-85 (153)
115 3s40_A Diacylglycerol kinase; 45.5 54 0.0018 28.0 7.1 78 2-89 10-108 (304)
116 2q9u_A A-type flavoprotein; fl 45.1 38 0.0013 30.0 6.2 45 1-45 257-315 (414)
117 2dc1_A L-aspartate dehydrogena 44.4 96 0.0033 25.1 8.3 46 1-47 1-60 (236)
118 3afo_A NADH kinase POS5; alpha 43.9 7.3 0.00025 35.4 1.2 70 2-81 43-149 (388)
119 3l6u_A ABC-type sugar transpor 43.7 1.3E+02 0.0044 24.4 9.1 68 2-78 10-96 (293)
120 2x0j_A Malate dehydrogenase; o 42.6 49 0.0017 28.6 6.3 14 34-47 66-79 (294)
121 2ohh_A Type A flavoprotein FPR 41.9 37 0.0013 29.8 5.6 45 1-45 257-315 (404)
122 2pbq_A Molybdenum cofactor bio 41.5 21 0.00072 28.4 3.5 47 1-47 6-78 (178)
123 3d4o_A Dipicolinate synthase s 41.2 25 0.00086 29.9 4.2 44 1-44 6-65 (293)
124 1rtt_A Conserved hypothetical 41.1 21 0.0007 28.2 3.4 31 1-31 7-44 (193)
125 1ydg_A Trp repressor binding p 40.3 27 0.00093 27.8 4.1 30 1-30 7-42 (211)
126 2zki_A 199AA long hypothetical 40.0 27 0.00093 27.4 4.0 30 1-30 5-39 (199)
127 4amg_A Snogd; transferase, pol 39.8 28 0.00095 30.2 4.4 31 1-31 23-58 (400)
128 3dfu_A Uncharacterized protein 39.8 18 0.00062 30.3 3.0 38 1-39 7-45 (232)
129 2i0f_A 6,7-dimethyl-8-ribityll 38.9 79 0.0027 24.8 6.4 73 1-74 13-113 (157)
130 3nbm_A PTS system, lactose-spe 38.9 50 0.0017 24.0 5.0 68 1-78 7-85 (108)
131 3rot_A ABC sugar transporter, 38.7 1.4E+02 0.0046 24.5 8.5 68 2-78 5-93 (297)
132 2fn9_A Ribose ABC transporter, 38.5 1.6E+02 0.0054 23.9 8.9 55 15-78 24-90 (290)
133 3hn7_A UDP-N-acetylmuramate-L- 38.0 53 0.0018 30.6 6.2 80 1-80 20-130 (524)
134 3nq4_A 6,7-dimethyl-8-ribityll 38.0 1.1E+02 0.0039 23.9 7.2 73 1-74 13-112 (156)
135 3m9w_A D-xylose-binding peripl 37.8 1.3E+02 0.0043 24.9 8.2 67 2-77 4-89 (313)
136 1jr2_A Uroporphyrinogen-III sy 37.3 36 0.0012 28.8 4.6 46 1-46 22-85 (286)
137 3n8k_A 3-dehydroquinate dehydr 37.1 22 0.00075 28.4 2.9 48 1-48 29-106 (172)
138 2g2c_A Putative molybdenum cof 36.1 17 0.00059 28.5 2.2 48 1-48 6-80 (167)
139 3mw8_A Uroporphyrinogen-III sy 36.0 19 0.00066 29.5 2.6 46 1-46 2-59 (240)
140 3lte_A Response regulator; str 35.6 28 0.00097 24.6 3.2 43 1-43 7-56 (132)
141 3f6c_A Positive transcription 35.6 30 0.001 24.5 3.4 73 1-81 2-84 (134)
142 1gtz_A 3-dehydroquinate dehydr 35.2 42 0.0014 26.4 4.2 48 1-48 7-84 (156)
143 3grc_A Sensor protein, kinase; 35.1 28 0.00095 25.0 3.1 75 1-82 7-91 (140)
144 3g1w_A Sugar ABC transporter; 34.9 1.5E+02 0.0051 24.2 8.2 55 15-78 26-93 (305)
145 3uug_A Multiple sugar-binding 34.8 1.9E+02 0.0066 23.9 8.9 54 15-77 25-90 (330)
146 2c4w_A 3-dehydroquinate dehydr 34.6 45 0.0015 26.7 4.3 48 1-48 10-90 (176)
147 2f00_A UDP-N-acetylmuramate--L 34.4 1.2E+02 0.0042 27.6 8.1 30 1-30 20-50 (491)
148 2c92_A 6,7-dimethyl-8-ribityll 34.1 90 0.0031 24.5 6.0 74 1-75 18-113 (160)
149 3i42_A Response regulator rece 33.6 21 0.00072 25.2 2.1 43 1-43 4-53 (127)
150 3gt7_A Sensor protein; structu 33.5 51 0.0017 24.2 4.5 81 1-88 8-100 (154)
151 4eg0_A D-alanine--D-alanine li 33.5 81 0.0028 26.7 6.3 42 1-43 14-71 (317)
152 3r5x_A D-alanine--D-alanine li 33.5 23 0.00077 30.0 2.6 42 1-43 4-61 (307)
153 3m6m_D Sensory/regulatory prot 33.4 24 0.00083 25.8 2.5 43 1-43 15-64 (143)
154 2ark_A Flavodoxin; FMN, struct 33.1 27 0.00092 27.4 2.9 45 1-45 5-60 (188)
155 3u3x_A Oxidoreductase; structu 32.7 2.4E+02 0.0083 24.3 9.6 28 1-29 27-56 (361)
156 2yq5_A D-isomer specific 2-hyd 32.6 57 0.0019 28.8 5.2 45 1-45 2-53 (343)
157 1ehs_A STB, heat-stable entero 32.2 7 0.00024 23.6 -0.6 14 74-87 32-45 (48)
158 2vyc_A Biodegradative arginine 32.0 2.4E+02 0.0083 27.4 10.1 77 1-82 1-96 (755)
159 3rfq_A Pterin-4-alpha-carbinol 31.9 29 0.001 27.9 2.9 48 1-48 31-100 (185)
160 3eod_A Protein HNR; response r 31.8 65 0.0022 22.5 4.7 73 1-79 8-87 (130)
161 3nep_X Malate dehydrogenase; h 31.7 1.1E+02 0.0038 26.5 6.9 14 34-47 66-79 (314)
162 3cg0_A Response regulator rece 31.7 46 0.0016 23.6 3.8 71 1-80 10-91 (140)
163 3snk_A Response regulator CHEY 31.5 40 0.0014 24.0 3.4 72 2-79 16-95 (135)
164 1iow_A DD-ligase, DDLB, D-ALA\ 31.0 80 0.0027 26.2 5.7 42 1-43 3-60 (306)
165 2pl1_A Transcriptional regulat 30.9 38 0.0013 23.4 3.2 43 1-43 1-50 (121)
166 2vvp_A Ribose-5-phosphate isom 30.8 49 0.0017 26.2 4.0 31 1-31 4-37 (162)
167 1jlj_A Gephyrin; globular alph 30.4 35 0.0012 27.5 3.1 48 1-48 15-89 (189)
168 2rir_A Dipicolinate synthase, 30.3 54 0.0018 27.9 4.6 43 1-43 8-66 (300)
169 2hna_A Protein MIOC, flavodoxi 30.3 86 0.0029 23.2 5.3 45 1-45 2-54 (147)
170 3ksm_A ABC-type sugar transpor 30.2 2.1E+02 0.007 22.8 9.1 68 2-78 2-91 (276)
171 2vvr_A Ribose-5-phosphate isom 29.9 53 0.0018 25.6 4.0 30 1-30 2-34 (149)
172 3edo_A Flavoprotein, putative 29.9 66 0.0023 24.2 4.6 27 1-27 4-34 (151)
173 2r85_A PURP protein PF1517; AT 29.9 59 0.002 27.4 4.8 31 1-32 3-33 (334)
174 3h75_A Periplasmic sugar-bindi 29.8 1.7E+02 0.0059 24.6 7.9 68 1-78 4-93 (350)
175 3u80_A 3-dehydroquinate dehydr 29.8 71 0.0024 25.0 4.6 35 14-48 33-82 (151)
176 2b99_A Riboflavin synthase; lu 29.4 1.7E+02 0.0057 22.9 6.8 74 2-76 4-97 (156)
177 3o74_A Fructose transport syst 29.3 1.7E+02 0.006 23.2 7.5 54 15-78 24-89 (272)
178 1oju_A MDH, malate dehydrogena 29.1 1.3E+02 0.0045 25.7 6.9 14 34-47 66-79 (294)
179 1kwg_A Beta-galactosidase; TIM 29.1 62 0.0021 30.9 5.2 34 14-47 429-462 (645)
180 2rdm_A Response regulator rece 29.0 43 0.0015 23.5 3.2 71 1-79 6-87 (132)
181 3oti_A CALG3; calicheamicin, T 28.9 58 0.002 28.3 4.6 31 1-31 21-56 (398)
182 2lpm_A Two-component response 28.7 15 0.00052 27.4 0.6 43 1-43 9-59 (123)
183 2qai_A V-type ATP synthase sub 28.2 51 0.0017 24.3 3.4 25 1-29 1-25 (111)
184 3cs3_A Sugar-binding transcrip 28.1 2.3E+02 0.008 22.7 8.5 45 2-46 10-66 (277)
185 3cg4_A Response regulator rece 27.9 38 0.0013 24.2 2.8 43 1-43 8-57 (142)
186 3tb6_A Arabinose metabolism tr 27.8 2.4E+02 0.0081 22.7 8.8 71 2-78 17-106 (298)
187 2qxy_A Response regulator; reg 27.7 59 0.002 23.2 3.8 73 1-80 5-84 (142)
188 4es6_A Uroporphyrinogen-III sy 27.6 36 0.0012 28.1 2.9 46 1-46 7-67 (254)
189 3npg_A Uncharacterized DUF364 27.6 62 0.0021 27.2 4.4 41 2-46 118-173 (249)
190 1gsa_A Glutathione synthetase; 27.4 63 0.0022 26.8 4.5 30 1-30 2-39 (316)
191 1qkk_A DCTD, C4-dicarboxylate 27.3 82 0.0028 22.9 4.7 71 1-79 4-83 (155)
192 1p3d_A UDP-N-acetylmuramate--a 27.2 1.3E+02 0.0046 27.2 7.0 30 1-30 19-49 (475)
193 3rqz_A Metallophosphoesterase; 27.1 55 0.0019 26.8 3.9 32 1-45 4-36 (246)
194 1oi7_A Succinyl-COA synthetase 27.0 2.5E+02 0.0084 23.8 8.2 72 2-83 146-238 (288)
195 3lua_A Response regulator rece 27.0 86 0.0029 22.2 4.7 74 1-79 5-89 (140)
196 2j48_A Two-component sensor ki 26.8 39 0.0013 22.8 2.5 45 1-45 2-53 (119)
197 8abp_A L-arabinose-binding pro 26.8 2.2E+02 0.0075 23.1 7.8 68 2-78 4-89 (306)
198 4gi5_A Quinone reductase; prot 26.6 79 0.0027 27.0 4.9 31 1-31 23-61 (280)
199 3h5i_A Response regulator/sens 26.4 1.7E+02 0.0059 20.6 6.9 72 1-78 6-85 (140)
200 3hv2_A Response regulator/HD d 26.2 37 0.0013 24.9 2.4 71 1-79 15-94 (153)
201 4fzr_A SSFS6; structural genom 26.1 69 0.0024 27.7 4.6 31 1-31 16-51 (398)
202 2rjn_A Response regulator rece 26.1 82 0.0028 22.8 4.5 73 1-81 8-89 (154)
203 2gkg_A Response regulator homo 26.0 30 0.001 24.0 1.8 43 1-43 6-55 (127)
204 3tsa_A SPNG, NDP-rhamnosyltran 25.8 77 0.0026 27.3 4.8 30 1-31 2-37 (391)
205 1uc8_A LYSX, lysine biosynthes 25.8 1E+02 0.0035 25.0 5.4 44 2-45 1-56 (280)
206 3hzh_A Chemotaxis response reg 25.5 35 0.0012 25.3 2.2 72 1-80 37-120 (157)
207 3abi_A Putative uncharacterize 25.4 1.4E+02 0.0047 26.0 6.5 27 1-29 17-44 (365)
208 3re1_A Uroporphyrinogen-III sy 25.4 40 0.0014 28.3 2.8 46 1-46 15-75 (269)
209 3nhm_A Response regulator; pro 24.9 51 0.0017 23.2 3.0 42 1-43 5-53 (133)
210 1j6u_A UDP-N-acetylmuramate-al 24.9 1.8E+02 0.0061 26.4 7.3 14 34-47 68-81 (469)
211 2qr3_A Two-component system re 24.8 31 0.0011 24.6 1.8 75 1-80 4-89 (140)
212 2fp4_A Succinyl-COA ligase [GD 24.7 1.6E+02 0.0053 25.4 6.5 75 2-82 154-249 (305)
213 2dfj_A Diadenosinetetraphospha 24.4 85 0.0029 26.6 4.7 24 1-24 1-25 (280)
214 1c2y_A Protein (lumazine synth 24.2 1.7E+02 0.0057 22.8 6.0 76 1-77 14-115 (156)
215 3ph3_A Ribose-5-phosphate isom 24.1 71 0.0024 25.4 3.8 31 1-31 21-54 (169)
216 3to5_A CHEY homolog; alpha(5)b 24.1 31 0.0011 25.9 1.6 70 1-79 13-95 (134)
217 3l5o_A Uncharacterized protein 23.8 67 0.0023 27.5 3.8 41 2-46 143-195 (270)
218 4ici_A Putative flavoprotein; 23.8 71 0.0024 24.8 3.8 29 1-29 14-45 (171)
219 3rc1_A Sugar 3-ketoreductase; 23.7 2.4E+02 0.0081 24.2 7.7 28 1-29 28-58 (350)
220 1hqk_A 6,7-dimethyl-8-ribityll 23.6 2.6E+02 0.0088 21.7 7.2 74 1-75 13-112 (154)
221 4ew6_A D-galactose-1-dehydroge 23.5 1.6E+02 0.0055 25.2 6.5 45 1-46 26-90 (330)
222 1uz5_A MOEA protein, 402AA lon 23.5 63 0.0022 29.2 3.8 34 15-48 212-257 (402)
223 4had_A Probable oxidoreductase 23.4 2.2E+02 0.0075 24.2 7.3 28 1-29 24-54 (350)
224 2zay_A Response regulator rece 23.3 26 0.0009 25.4 1.1 44 1-44 9-59 (147)
225 1di6_A MOGA, molybdenum cofact 23.3 40 0.0014 27.3 2.3 47 1-47 4-76 (195)
226 3hdg_A Uncharacterized protein 23.2 31 0.0011 24.6 1.4 73 1-79 8-87 (137)
227 1uuy_A CNX1, molybdopterin bio 22.9 1.1E+02 0.0036 23.7 4.7 48 1-48 6-82 (167)
228 2vzf_A NADH-dependent FMN redu 22.6 34 0.0012 27.1 1.7 30 1-30 3-41 (197)
229 1k68_A Phytochrome response re 22.6 60 0.0021 22.8 3.0 75 1-80 3-94 (140)
230 2vk2_A YTFQ, ABC transporter p 22.6 2.5E+02 0.0087 22.9 7.4 69 1-78 3-90 (306)
231 1kz1_A 6,7-dimethyl-8-ribityll 22.6 2.4E+02 0.0082 22.0 6.6 73 1-74 18-117 (159)
232 3he8_A Ribose-5-phosphate isom 22.3 82 0.0028 24.5 3.8 31 1-31 1-34 (149)
233 3kto_A Response regulator rece 22.0 67 0.0023 22.8 3.2 74 1-79 7-88 (136)
234 3ew7_A LMO0794 protein; Q8Y8U8 21.6 89 0.003 24.2 4.1 29 1-29 1-30 (221)
235 3cnb_A DNA-binding response re 21.2 64 0.0022 22.8 2.9 45 1-45 9-62 (143)
236 2b4a_A BH3024; flavodoxin-like 21.1 63 0.0022 22.9 2.8 43 1-43 16-66 (138)
237 3t6k_A Response regulator rece 21.1 72 0.0025 22.7 3.2 42 2-43 6-54 (136)
238 2iuy_A Avigt4, glycosyltransfe 21.0 1.3E+02 0.0043 25.2 5.2 19 14-32 38-56 (342)
239 3jy6_A Transcriptional regulat 20.9 3.2E+02 0.011 21.8 8.6 52 15-78 29-92 (276)
240 3qq5_A Small GTP-binding prote 20.9 1.3E+02 0.0044 27.2 5.4 55 15-75 341-403 (423)
241 3jtm_A Formate dehydrogenase, 20.8 1.7E+02 0.0058 25.8 6.0 45 1-45 3-70 (351)
242 1vi6_A 30S ribosomal protein S 20.8 3.4E+02 0.012 22.1 7.9 65 3-78 71-145 (208)
243 1g5b_A Serine/threonine protei 20.8 95 0.0032 24.7 4.1 36 1-46 13-49 (221)
244 3f6p_A Transcriptional regulat 20.7 77 0.0026 21.9 3.2 42 2-43 4-52 (120)
245 3euw_A MYO-inositol dehydrogen 20.6 2E+02 0.0067 24.5 6.4 27 1-28 5-33 (344)
246 3o9z_A Lipopolysaccaride biosy 20.6 3.8E+02 0.013 22.5 9.9 29 1-29 4-33 (312)
247 1kgs_A DRRD, DNA binding respo 20.6 67 0.0023 25.1 3.1 72 1-80 3-83 (225)
248 3dfz_A SIRC, precorrin-2 dehyd 20.5 1.4E+02 0.0048 24.5 5.1 30 1-31 32-62 (223)
249 1ys7_A Transcriptional regulat 20.3 70 0.0024 25.2 3.2 43 1-43 8-57 (233)
250 3h2s_A Putative NADH-flavin re 20.3 98 0.0033 24.1 4.1 29 1-29 1-30 (224)
251 3fro_A GLGA glycogen synthase; 20.3 1.2E+02 0.0041 26.1 5.0 30 1-30 3-42 (439)
252 3gl9_A Response regulator; bet 20.3 1.3E+02 0.0044 20.8 4.4 42 2-43 4-52 (122)
253 3uuw_A Putative oxidoreductase 20.2 1.6E+02 0.0056 24.6 5.7 27 1-28 7-36 (308)
254 3a10_A Response regulator; pho 20.2 81 0.0028 21.4 3.2 43 1-43 2-51 (116)
255 1g8l_A Molybdopterin biosynthe 20.1 68 0.0023 29.1 3.3 35 14-48 208-254 (411)
256 3q2i_A Dehydrogenase; rossmann 20.1 3E+02 0.01 23.5 7.5 28 1-29 14-44 (354)
257 3egc_A Putative ribose operon 20.1 2.6E+02 0.0088 22.6 6.8 32 15-46 30-73 (291)
No 1
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=100.00 E-value=3e-33 Score=238.37 Aligned_cols=192 Identities=21% Similarity=0.343 Sum_probs=144.2
Q ss_pred EEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcC-Cch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GES-TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 2 ki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~G-G~~-~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
||+||++. ||..++.++|+++|++++++++++++.++|+||+|| |.+ +.+..+.. . ..++.+.+.++|+||||
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l~~~D~lilPG~g~~~~~~~~~~~-~---~~i~~~~~~~~PvlGIC 79 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADKLFLPGVGTASEAMKNLTE-R---DLIELVKRVEKPLLGIC 79 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHHHHCSEEEECCCSCHHHHHHHHHH-T---TCHHHHHHCCSCEEEET
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHHhCCCEEEECCCCCHHHHHHHHHh-c---ChHHHHHHcCCCEEEEc
Confidence 49999985 477899999999999999999888888999999999 433 33444432 2 34555667899999999
Q ss_pred hhHHHHHHhhcccc---CCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--C
Q 024993 79 AGLIFLANKAVGQK---LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (259)
Q Consensus 79 ~G~QlL~~~~~~~~---~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~ 153 (259)
+|||+|+.++++.. .....+++++++++.+...+ ....++.+|+.+... ..++++.++++ .
T Consensus 80 lG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~------~~~~l~~~l~~~~~ 145 (211)
T 4gud_A 80 LGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTG--------DLPLPHMGWNTVQVK------EGHPLFNGIEPDAY 145 (211)
T ss_dssp HHHHTTSSEECCC----CCCEECCCSSSCEEEECCCT--------TSCSSEEEEECCEEC------TTCGGGTTCCTTCC
T ss_pred hhHhHHHHHhCCcccccCCccccceeccceEEEcccC--------Ccceeeccceeeeee------ccChhhcCCCCCcE
Confidence 99999999987531 22357899999999875432 245667788765321 35788888854 5
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch--HHHHHHHHHHH
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWHSYFLKMMS 220 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~~nfl~~~~ 220 (259)
++++|++.+... ..++|+++++ ..++++++++|+||+|||||++.+. +|++||+++|.
T Consensus 146 ~~~~H~~~v~~~----~~~~a~~~~g-----~~~~~~v~~~~v~GvQFHPE~s~~~G~~ll~nFl~~~g 205 (211)
T 4gud_A 146 FYFVHSFAMPVG----DYTIAQCEYG-----QPFSAAIQAGNYYGVQFHPERSSKAGARLIQNFLELRG 205 (211)
T ss_dssp EEEEESEECCCC----TTEEEEEESS-----SEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHC--
T ss_pred EEEEeeEEeCCC----CeEEEEecCC-----CeEEEEEeCCCEEEEEccCEecCccHHHHHHHHHHHhc
Confidence 778899886432 1578888875 4577888999999999999987543 89999999885
No 2
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.97 E-value=3.4e-30 Score=217.17 Aligned_cols=189 Identities=39% Similarity=0.629 Sum_probs=138.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
|||+|+++.|+|.++.++|+++|++++++++++++.++|+||+|||++...+.+.+...+.+.|++++++++|+||||+|
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G 81 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAG 81 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHH
Confidence 89999999899999999999999999999877778899999999998665444544456678999999999999999999
Q ss_pred HHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--EEEEE
Q 024993 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLA 158 (259)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~--~~~~H 158 (259)
+|+|+.++++. ..+++|+++.++.+...+ +.... + ..+..+.++++. ++++|
T Consensus 82 ~q~l~~~~gg~---~~~~lg~~~~~~~~~~~g----------------~~~~~---~----~~~~~~~~~g~~~~~~~~h 135 (196)
T 2nv0_A 82 LIILAKEIAGS---DNPHLGLLNVVVERNSFG----------------RQVDS---F----EADLTIKGLDEPFTGVFIR 135 (196)
T ss_dssp HHHHSBCCC-------CCCCCSCEEEECCCSC----------------TTTSE---E----EEEECCTTCSSCEEEEEES
T ss_pred HHHHHHHhcCC---CCCcccCCceeEeccCCC----------------ccccc---c----cCCcccccCCCceEEEEEe
Confidence 99999999752 357899999887653221 11000 0 011222333333 34467
Q ss_pred eeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHhcCC
Q 024993 159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVGE 224 (259)
Q Consensus 159 s~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~~~~ 224 (259)
++.+...+.+ ..++|+++ ..+++++.++++|+|||||++.+.+++++|++.|+++|+
T Consensus 136 ~~~v~~~~~~-~~v~a~~d--------~~~~a~~~~~~~gvQfHPE~~~~~~l~~~fl~~~~~~~~ 192 (196)
T 2nv0_A 136 APHILEAGEN-VEVLSEHN--------GRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQ 192 (196)
T ss_dssp CCEEEEECTT-CEEEEEET--------TEEEEEEETTEEEESSCTTSSSCCHHHHHHHHHHHHHHH
T ss_pred cceecccCCC-cEEEEEEC--------CEEEEEEECCEEEEEECCccCCchHHHHHHHHHHHhhhh
Confidence 6655322222 25677763 256888889999999999998777899999999987554
No 3
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.4e-30 Score=216.35 Aligned_cols=181 Identities=31% Similarity=0.502 Sum_probs=132.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
|||+|+++.|++.++.++|+++|++++++++++++.++|+||+|||+++.++.+.+.+++.+.|+ ++++|+||||+|
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~~~~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G 77 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAG 77 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECSGGGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHH
Confidence 99999999999999999999999999999877778899999999997765554443455666665 689999999999
Q ss_pred HHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCC-CCEEEEEe
Q 024993 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG-PDVDVLAD 159 (259)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~-~~~~~~Hs 159 (259)
+|+|+.++++ ...++|++++++.+... ++.... +..++++.++. -.++++|+
T Consensus 78 ~Qll~~~~gg----~~~~lg~~~~~~~~~~~----------------~~~~~~-------~~~~~~~~~~~~~~~~~~H~ 130 (186)
T 2ywj_A 78 MVLLSKGTGI----NQILLELMDITVKRNAY----------------GRQVDS-------FEKEIEFKDLGKVYGVFIRA 130 (186)
T ss_dssp HHHHSSCCSS----CCCCCCCSSEEEETTTT----------------CSSSCC-------EEEEEEETTTEEEEEEESSC
T ss_pred HHHHHHHhCC----CcCccCCCceeEEeccC----------------CCcccc-------eecccccccCCcEEEEEEec
Confidence 9999999863 35668887777654211 110000 00123333331 13455688
Q ss_pred eecCCc-ccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCc-hHHHHHHHHHHH
Q 024993 160 YPVPSN-KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWHSYFLKMMS 220 (259)
Q Consensus 160 ~~~~~~-~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~-~~i~~nfl~~~~ 220 (259)
+.+... +.. ..++|++ + ..++++++++++|+|||||++.+ .++++||++.|+
T Consensus 131 ~~v~~l~~~~-~~v~a~s-d-------~~~~a~~~~~~~gvQfHPE~~~~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 131 PVVDKILSDD-VEVIARD-G-------DKIVGVKQGKYMALSFHPELSEDGYKVYKYFVENCV 184 (186)
T ss_dssp CEEEEECCTT-CEEEEEE-T-------TEEEEEEETTEEEESSCGGGSTTHHHHHHHHHHHHT
T ss_pred ceeeecCCCC-eEEEEEE-C-------CEEEEEeeCCEEEEECCCCcCCchhHHHHHHHHHHh
Confidence 776433 333 2677887 3 26888998999999999999886 489999999875
No 4
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.3e-30 Score=220.63 Aligned_cols=184 Identities=39% Similarity=0.595 Sum_probs=134.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
|||+|+++.++|.++.++|++.|++++++++.++++++|+||+|||.+..++.+.+...+.+.|++++++++|+||||+|
T Consensus 21 ~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G 100 (208)
T 2iss_D 21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAG 100 (208)
T ss_dssp CEEEEECSSSCHHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred cEEEEEECCCchHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHH
Confidence 79999999899999999999999999999887778899999999997665544444456678999999999999999999
Q ss_pred HHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCC-CC--EEEE
Q 024993 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG-PD--VDVL 157 (259)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~-~~--~~~~ 157 (259)
+|+|+.++++. ..+++|++++++.+.+.+ +.... + ..+..+.+++ +. ++++
T Consensus 101 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g----------------~~~~~---~----~~~~~~~~~~~~~~~~~~~ 154 (208)
T 2iss_D 101 VILLAKRIKNY---SQEKLGVLDITVERNAYG----------------RQVES---F----ETFVEIPAVGKDPFRAIFI 154 (208)
T ss_dssp HHHHEEEEC------CCCCCCEEEEEETTTTC----------------SGGGC---E----EEEECCGGGCSSCEEEEES
T ss_pred HHHHHHHcCCC---CCCCccccceEEEecCCC----------------ccccc---c----cCCcccccCCCCceEEEEE
Confidence 99999999752 467899999988754222 11000 0 0111222332 22 3344
Q ss_pred EeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHH
Q 024993 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMM 219 (259)
Q Consensus 158 Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~ 219 (259)
|++.+...+.. ..++|+++ ..+++++.++++|+|||||++.+.+++++|++.|
T Consensus 155 h~~~v~~~~~~-~~v~a~~d--------~~~~a~~~~~i~GvQfHPE~~~~~~l~~~fl~~~ 207 (208)
T 2iss_D 155 RAPRIVETGKN-VEILATYD--------YDPVLVKEGNILACTFHPELTDDLRLHRYFLEMV 207 (208)
T ss_dssp SCCEEEEECSS-CEEEEEET--------TEEEEEEETTEEEESSCGGGSSCCHHHHHHHTTC
T ss_pred eCcccccCCCC-cEEEEEEC--------CEEEEEEECCEEEEEeCCCcCCcHHHHHHHHHHh
Confidence 65544322222 25677763 2678999899999999999988779999999765
No 5
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.96 E-value=1.3e-29 Score=212.37 Aligned_cols=185 Identities=41% Similarity=0.596 Sum_probs=137.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcC-CcEEEEch
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCA 79 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g-~PiLGIC~ 79 (259)
|+|+|+.+.|++.++.++|+++|+++++++++++++++|+||+|||++...+++.++..+.+.|+++++++ +|+||||+
T Consensus 3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~ 82 (191)
T 2ywd_A 3 GVVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCA 82 (191)
T ss_dssp CCEEEECSSSCHHHHHHHHHTTTCCCEEECSGGGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETH
T ss_pred cEEEEEecCCchHHHHHHHHHCCCEEEEeCChhhhccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECH
Confidence 46999999999999999999999999999887778899999999997555555554456789999999999 99999999
Q ss_pred hHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--CEEEE
Q 024993 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL 157 (259)
Q Consensus 80 G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~ 157 (259)
|+|+|+.++++. ...+++|++++++.+.++++...+ + ..+..+.++ + .++++
T Consensus 83 G~Q~l~~~~gg~--~~~~~lg~~~~~~~~~~~g~~~~~--------~---------------~~~~~~~~~-~~~~~~~~ 136 (191)
T 2ywd_A 83 GAIWLAKEIVGY--PEQPRLGVLEAWVERNAFGRQVES--------F---------------EEDLEVEGL-GSFHGVFI 136 (191)
T ss_dssp HHHHHEEEETTC--TTCCCCCCEEEEEETTCSCCSSSE--------E---------------EEEEEETTT-EEEEEEEE
T ss_pred HHHHHHHHhCCC--CCCccccccceEEEcCCcCCcccc--------c---------------cccccccCC-CceeEEEE
Confidence 999999999741 236788999988765322110000 0 001112222 2 34568
Q ss_pred EeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHH
Q 024993 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMS 220 (259)
Q Consensus 158 Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~ 220 (259)
||+++...+.. ..++|+++ ..++++++++++|+|||||++.+.+|+++|++.|+
T Consensus 137 Hs~~v~~l~~~-~~~~a~~~--------~~~~a~~~~~~~gvQfHPE~~~~~~l~~~f~~~~~ 190 (191)
T 2ywd_A 137 RAPVFRRLGEG-VEVLARLG--------DLPVLVRQGKVLASSFHPELTEDPRLHRYFLELAG 190 (191)
T ss_dssp SCCEEEEECTT-CEEEEEET--------TEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHT
T ss_pred cccceeccCCC-cEEEEEEC--------CEEEEEEECCEEEEEeCCCCCCCcHHHHHHHHHhc
Confidence 88876432222 25777762 26889999999999999999876699999998874
No 6
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.96 E-value=1.4e-29 Score=218.33 Aligned_cols=202 Identities=34% Similarity=0.582 Sum_probs=138.2
Q ss_pred CEEEEEecCCChHHHHHHHHhC---CCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhh--CCHHHHHHHHHHc-CCcE
Q 024993 1 MVVGVLALQGSFNEHIAALKRL---GVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEY--HNLFPALREFVKM-GKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~---G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~--~~~~~~i~~~~~~-g~Pi 74 (259)
|||+|+++.+++.++.++|+++ |+++++++++++++++|+||+|||.++.++.+.+. ..+.+.|++++++ ++|+
T Consensus 4 ~~I~Il~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~Pi 83 (227)
T 2abw_A 4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI 83 (227)
T ss_dssp EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE
T ss_pred cEEEEEeCCCCcHHHHHHHHHhccCCeEEEEEcCccccccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEE
Confidence 6899999989999999999999 99999888766677899999999986655444321 2457889999999 9999
Q ss_pred EEEchhHHHHHHhhcccc-CC---CcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccC
Q 024993 75 WGTCAGLIFLANKAVGQK-LG---GQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~-~g---~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~ 150 (259)
||||+|+|+|+.++++.. .+ ..+++|+++.++.+..+|+...++.....++.+. .+.+-
T Consensus 84 lGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------------~~~g~ 146 (227)
T 2abw_A 84 WGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDS-----------------SAFKK 146 (227)
T ss_dssp EEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCC-----------------TTCCT
T ss_pred EEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCcccccccccccccccc-----------------ccCCC
Confidence 999999999999998642 11 1678999998876543322111110001111000 00000
Q ss_pred CCCEEEEEeeecCCc-ccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHhc
Q 024993 151 GPDVDVLADYPVPSN-KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEV 222 (259)
Q Consensus 151 ~~~~~~~Hs~~~~~~-~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~~ 222 (259)
.-..++.|++.+... +.+ ..++|+++++. +++..+++++.++++|+|||||++.+.+|+++|++.|+..
T Consensus 147 ~~~~~~~h~~~v~~~~~~~-~~vla~~~~~~--~g~~~~~a~~~~~v~gvQfHPE~~~~~~l~~~Fl~~~~~~ 216 (227)
T 2abw_A 147 DLTAACIRAPYIREILSDE-VKVLATFSHES--YGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYFYEKVKNY 216 (227)
T ss_dssp TCEEEEESCCEEEEECCTT-CEEEEEEEETT--TEEEEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHHHH
T ss_pred ceeEEEEEcceEeecCCCC-cEEEEEccccc--CCCCceEEEEECCEEEEEECCeeCCCcHHHHHHHHHHHhh
Confidence 112355677655322 222 26778876410 0124678899999999999999998779999999998643
No 7
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.96 E-value=2e-29 Score=216.53 Aligned_cols=188 Identities=40% Similarity=0.647 Sum_probs=137.3
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
|||+|+++.++|.++.++|++.|+++++++..++++++|+||+|||++...+.+.+...+.+.|++++++++|+||||+|
T Consensus 24 ~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G 103 (219)
T 1q7r_A 24 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAG 103 (219)
T ss_dssp CEEEEESCGGGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTH
T ss_pred CEEEEEeCCCCcHHHHHHHHHCCCEEEEECCHHHHhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHH
Confidence 78999999899999999999999999999887778899999999998755444444455678999999999999999999
Q ss_pred HHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--EEEEE
Q 024993 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLA 158 (259)
Q Consensus 81 ~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~--~~~~H 158 (259)
+|+|+.++++. ..+++|+++.++.+.+. |+.... . ..+..+.++++. ++++|
T Consensus 104 ~QlL~~~~gg~---~~~~lg~~~~~~~~~~~----------------g~~~~~---~----~~~~~~~g~g~~~~~~~~h 157 (219)
T 1q7r_A 104 LILLAKRIVGY---DEPHLGLMDITVERNSF----------------GRQRES---F----EAELSIKGVGDGFVGVFIR 157 (219)
T ss_dssp HHHHEEEEESS---CCCCCCCEEEEEECHHH----------------HCCCCC---E----EEEEEETTTEEEEEEEESS
T ss_pred HHHHHHHhCCC---CcCCcCccceEEEecCC----------------Cccccc---e----ecCcccCCCCCceEEEEEe
Confidence 99999999752 35789998888765321 111100 0 001112222222 23446
Q ss_pred eeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHhcC
Q 024993 159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVG 223 (259)
Q Consensus 159 s~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~~~ 223 (259)
++.+...+.+ ..++|++ + ..+++++.++++|+|||||++.+.+++++|++.|++++
T Consensus 158 ~~~v~~l~~~-~~v~a~s-d-------g~~ea~~~~~i~GvQfHPE~~~~~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 158 APHIVEAGDG-VDVLATY-N-------DRIVAARQGQFLGCSFHPELTDDHRLMQYFLNMVKEAK 213 (219)
T ss_dssp CCEEEEECTT-CEEEEEE-T-------TEEEEEEETTEEEESSCGGGSSCCHHHHHHHHHHHHHH
T ss_pred cceeeccCCC-cEEEEEc-C-------CEEEEEEECCEEEEEECcccCCCHHHHHHHHHHHHHhh
Confidence 5544322222 2567776 3 26789998999999999999876689999999998765
No 8
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.96 E-value=5.3e-29 Score=210.71 Aligned_cols=188 Identities=19% Similarity=0.250 Sum_probs=137.0
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcC-Cch-hHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GES-TTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 1 mki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~G-G~~-~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
|||+|+++. +++.++.++|++.|+++++++++++++++|+||+|| |.. ..+.++++ ..+.+.|++++++++|+|||
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~d~lil~G~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PilGI 81 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQE-SGFVERVRRHLERGLPFLGI 81 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSS-SCTHHHHHHHHHTTCCEEEC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChHHcccCCEEEECCCCcHHHHHHHHHh-cCHHHHHHHHHHcCCeEEEE
Confidence 589999864 589999999999999999998877788999999999 543 33344432 34678999999999999999
Q ss_pred chhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC-CEEE
Q 024993 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDV 156 (259)
Q Consensus 78 C~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-~~~~ 156 (259)
|+|+|+|+.++.+- |+..++|++++++.+.+ . .+.++.||+.++. .+ + |.++++ .+++
T Consensus 82 C~G~Qll~~~~~~~--Gg~~~l~~~~g~v~~~~---------~-~~~~~~G~~~v~~-------~~-~-l~~~~~~~~~~ 140 (200)
T 1ka9_H 82 CVGMQVLYEGSEEA--PGVRGLGLVPGEVRRFR---------A-GRVPQMGWNALEF-------GG-A-FAPLTGRHFYF 140 (200)
T ss_dssp THHHHTTSSEETTS--TTCCCCCSSSSEEEECC---------S-SSSSEEEEEECEE-------CG-G-GGGGTTCEEEE
T ss_pred cHHHHHHHHhcccc--CCcCCccccccEEEECC---------C-CCCCceeEEEEEe-------ch-h-hhcCCCCCEEE
Confidence 99999999996321 23788999999887641 0 1356789987642 12 3 555533 4567
Q ss_pred EEeeecCCcccCCCcceeeeec-ccCCCCCceEEEEEeCCEEEEEECccCCCch--HHH---HHHHHHH
Q 024993 157 LADYPVPSNKVLYSSSTVEIQE-ENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWH---SYFLKMM 219 (259)
Q Consensus 157 ~Hs~~~~~~~~~~~~~lA~s~~-~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~--~i~---~nfl~~~ 219 (259)
+||+++ ..... .+ |++++ + ...++...+++++|+|||||++.+. +|+ +||++.|
T Consensus 141 ~Hs~~~-~~~~~--~v-a~s~~~g-----~~~~~~~~~~~i~gvQfHPE~~~~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 141 ANSYYG-PLTPY--SL-GKGEYEG-----TPFTALLAKENLLAPQFHPEKSGKAGLAFLALARRYFEVL 200 (200)
T ss_dssp EESEEC-CCCTT--CC-EEEEETT-----EEEEEEEECSSEEEESSCTTSSHHHHHHHHHHHHHHC---
T ss_pred eccccc-CCCCC--cE-EEEEeCC-----eEEEEEEeeCCEEEEecCCCcCccchhHHHHHHHHHHhhC
Confidence 899998 43221 45 88776 3 2344455566999999999998643 799 9998764
No 9
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.96 E-value=3.3e-29 Score=211.89 Aligned_cols=189 Identities=19% Similarity=0.257 Sum_probs=137.3
Q ss_pred CEEEEEecC-CChHHHHHHHHhCC-----CeEEEeCCCCCCCCcCEEEEcCC-c-hhHHHHHHhhCCHHHHHHHHHHcCC
Q 024993 1 MVVGVLALQ-GSFNEHIAALKRLG-----VKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 1 mki~vl~~~-G~~~~~~~~L~~~G-----~~v~~~~~~~~l~~~d~iil~GG-~-~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|||+||++. |++.++.++|+++| +++++++++++ .++|+||+||+ . ...+.++++ ..+.+.|++++++++
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~-~~~dglilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~ 78 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN-DLYDLLFIPGVGHFGEGMRRLRE-NDLIDFVRKHVEDER 78 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS-SCCSEEEECCCSCSHHHHHHHHH-TTCHHHHHHHHHTTC
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc-cCCCEEEECCCCcHHHHHHHHHh-hCHHHHHHHHHHcCC
Confidence 999999975 58999999999999 99999988777 88999999994 3 334555643 346789999999999
Q ss_pred cEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC
Q 024993 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (259)
Q Consensus 73 PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~ 152 (259)
|+||||+|+|+|+.++++. +...+++++++++.+.+. .++++.||+.+.. ..+ .-..
T Consensus 79 PilGIC~G~Qll~~~~g~~--G~~~~l~~~~g~v~~~~~----------~~~~~~g~~~l~~--------~~~---~~~~ 135 (201)
T 1gpw_B 79 YVVGVCLGMQLLFEESEEA--PGVKGLSLIEGNVVKLRS----------RRLPHMGWNEVIF--------KDT---FPNG 135 (201)
T ss_dssp EEEEETHHHHTTSSEETTE--EEEECCCSSSEEEEECCC----------SSCSEEEEEEEEE--------SSS---SCCE
T ss_pred eEEEEChhHHHHHHhhccC--CCCCCcceeeeEEEEcCC----------CCCCcccceeeEe--------ccC---CCCC
Confidence 9999999999999998631 236778888888876321 1355677764311 100 0012
Q ss_pred CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEE-EeCCEEEEEECccCCCch--HHHHHHHHHHHhc
Q 024993 153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAV-RQGNLLGTAFHPELTADT--RWHSYFLKMMSEV 222 (259)
Q Consensus 153 ~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~-~~~~v~gvQfHPE~~~~~--~i~~nfl~~~~~~ 222 (259)
.++++|++++... + ..++|++++. ...++++ .+++++|+|||||++.+. +|++||++.|+.+
T Consensus 136 ~v~~~H~~~v~~~--~-~~vla~s~~~-----g~~~~a~~~~~~i~gvQfHPE~~~~~~~~l~~~f~~~~~~~ 200 (201)
T 1gpw_B 136 YYYFVHTYRAVCE--E-EHVLGTTEYD-----GEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSLSR 200 (201)
T ss_dssp EEEEEESEEEEEC--G-GGEEEEEEET-----TEEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHHSSCC
T ss_pred eEEEECcceeccC--C-CEEEEEEccC-----CceEEEEEECCCEEEEECCCcccCHhHHHHHHHHHHHhhcC
Confidence 4577899987543 2 2688988762 0134555 466999999999998543 8999999987543
No 10
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.95 E-value=1.6e-27 Score=230.15 Aligned_cols=196 Identities=23% Similarity=0.333 Sum_probs=151.0
Q ss_pred CEEEEEecC-CChHHHHHHHHhCCCeEEEeCCCCC--CCCcCEEEEcC-Cchh-HHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPG-GEST-TMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~-G~~~~~~~~L~~~G~~v~~~~~~~~--l~~~d~iil~G-G~~~-~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|||+|+++. |++.++.++|+++|+++++++++++ +.++|+||+|| |... .+..+.. ..+.+.|++++++++|+|
T Consensus 5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~~~l~~~DglILpGgG~~~~~~~~l~~-~~~~~~i~~~~~~g~PiL 83 (555)
T 1jvn_A 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN-RGFEKPIREYIESGKPIM 83 (555)
T ss_dssp CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHH-TTCHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccccccccCCEEEECCCCchHhHhhhhhh-ccHHHHHHHHHHcCCcEE
Confidence 579999985 6888999999999999999987665 78999999999 5533 3344433 456789999999999999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--C
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~ 153 (259)
|||+|||+|+.++.+ .+++.+||++++++.+.+. ...+++++||+.++. . +++|.++++ .
T Consensus 84 GIC~G~QlL~~a~~e--gg~~~~Lg~lgg~v~~~~~--------~~~~~~~~G~~~v~~-------~-~~L~~~l~~~~~ 145 (555)
T 1jvn_A 84 GIXVGLQALFAGSVE--SPKSTGLNYIDFKLSRFDD--------SEKPVPEIGWNSCIP-------S-ENLFFGLDPYKR 145 (555)
T ss_dssp EEEHHHHTTEEEETT--BTTCCCCCSEEEEEEECCT--------TTSCSSEEEEECCCC-------C-TTCCTTCCTTSC
T ss_pred EEchhhhhhhhhhhc--CCCccccCCCCcEEEECCc--------CCCCCccccceEEEE-------c-CHHHhhCCCCce
Confidence 999999999998842 2457899999999876420 124577899998753 2 678887755 5
Q ss_pred EEEEEeeecCCccc------CCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCc--hHHHHHHHHHH
Q 024993 154 VDVLADYPVPSNKV------LYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD--TRWHSYFLKMM 219 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~------~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~--~~i~~nfl~~~ 219 (259)
++++|||+++..+. ....++|+++++ .+.++++++.+++||+|||||++.+ .+|+++|++..
T Consensus 146 ~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~----~D~~i~ai~~~~i~GvQFHPE~s~~~g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 146 YYFVHSFAAILNSEKKKNLENDGWKIAKAKYG----SEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQ 215 (555)
T ss_dssp EEEEESEECBCCHHHHHHHHHTTCEEEEEEET----TEEEEEEEEETTEEEESSBGGGSHHHHHHHHHHHHTTC
T ss_pred EEEEEEEEEEecccccccCCCCCEEEEEEcCC----CCCeEEEEEeCCEEEEEeCcEecChhHHHHHHHHHhcc
Confidence 78899999865321 113678888764 1257899999999999999999865 37999999643
No 11
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.94 E-value=1.4e-27 Score=204.25 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=124.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCC---CCCCCCcCEEEEcCC-chhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~---~~~l~~~d~iil~GG-~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|||+++++.++|. ++.++|+++|+++++++. ++++.++|+||+||| +.+..+.+. .....+...++++|+|
T Consensus 14 ~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~p~~~~~~~~----~~~l~~~~~~~~~PiL 89 (212)
T 2a9v_A 14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDK----LGSVGKYIDDHNYPIL 89 (212)
T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGG----HHHHHHHHHHCCSCEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCCCCCCccccc----chhHHHHHHhCCCCEE
Confidence 7999999988887 577999999998888765 345667999999999 554332211 0112223346899999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (259)
|||+|+|+|+.++++ ++.+. +.++.||+.+... .+++++.++++.
T Consensus 90 GIC~G~Qll~~~lGg--------------~v~~~-------------~~~~~G~~~v~~~------~~~~l~~~~~~~~~ 136 (212)
T 2a9v_A 90 GICVGAQFIALHFGA--------------SVVKA-------------KHPEFGKTKVSVM------HSENIFGGLPSEIT 136 (212)
T ss_dssp EETHHHHHHHHHTTC--------------EEEEE-------------EEEEEEEEEEEES------CCCGGGTTCCSEEE
T ss_pred EEChHHHHHHHHhCC--------------EEEcC-------------CCcccCceeeEEC------CCChhHhcCCCceE
Confidence 999999999999852 33331 1124577654321 245777776554
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCc---hHHHHHHHHHHHhcCC
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD---TRWHSYFLKMMSEVGE 224 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~---~~i~~nfl~~~~~~~~ 224 (259)
++..|++.+...+.. ..++|+++++ .+++++. ++++|+|||||++.+ .+|+++|++.|+.+++
T Consensus 137 v~~~H~~~v~~l~~~-~~vlA~s~d~-------~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 137 VWENHNDEIINLPDD-FTLAASSATC-------QVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYRE 204 (212)
T ss_dssp EEEEEEEEEESCCTT-EEEEEECSSC-------SCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHHHHHHHHH
T ss_pred EEeEhhhhHhhCCCC-cEEEEEeCCC-------CEEEEEECCCCEEEEEeCCCCCCCccHHHHHHHHHHHHHHhhh
Confidence 456677776433333 2678887654 4566663 589999999998863 2899999999987654
No 12
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.94 E-value=1.5e-26 Score=195.01 Aligned_cols=175 Identities=17% Similarity=0.172 Sum_probs=118.1
Q ss_pred CE-EEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 024993 1 MV-VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 1 mk-i~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|| |+||++.+++.. +.++|+++|+++++++..+ ++. ++|+||++||..+..+.. ......+.|+++ +.++
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~-~~~~~~~~i~~~-~~~~ 78 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRE-DIGVSLDVIKYL-GKRT 78 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHH-HHTTHHHHHHHH-TTTS
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhh-hhhHHHHHHHHh-cCCC
Confidence 88 999999888875 4689999999999987653 343 699999988743221110 111234677764 7899
Q ss_pred cEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecC--cccccC
Q 024993 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRA--PAVLDV 150 (259)
Q Consensus 73 PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--pl~~~~ 150 (259)
|+||||+|+|+|+.++++ ++.+.+ ..++.+|+.+... ..+ ++|.++
T Consensus 79 PvLGIC~G~QlL~~~~gg--------------~v~~~~------------~~~~g~~~~v~~~------~~~~~~l~~~~ 126 (195)
T 1qdl_B 79 PILGVCLGHQAIGYAFGA--------------KIRRAR------------KVFHGKISNIILV------NNSPLSLYYGI 126 (195)
T ss_dssp CEEEETHHHHHHHHHTTC--------------EEEEEE------------EEEEEEEEEEEEC------CSSCCSTTTTC
T ss_pred cEEEEehHHHHHHHHhCC--------------EEeccC------------CCcCCCceEEEEC------CCCHhHHHhcC
Confidence 999999999999999963 333321 0112234322110 133 677776
Q ss_pred CC--CEEEEEeeecCCcccCCCcceeee-ecccCCCCCceEEEEEeC--CEEEEEECccCCCch---HHHHHHHH
Q 024993 151 GP--DVDVLADYPVPSNKVLYSSSTVEI-QEENAMPEKKVIVAVRQG--NLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 151 ~~--~~~~~Hs~~~~~~~~~~~~~lA~s-~~~~~~~~~~~~~~~~~~--~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
++ .++++|++.+...+.+ ..++|++ +++ .+++++.+ +++|+|||||++.++ +|++||++
T Consensus 127 ~~~~~v~~~H~~~v~~l~~~-~~vla~s~~~g-------~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 127 AKEFKATRYHSLVVDEVHRP-LIVDAISAEDN-------EIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp CSEEEEEEEEEEEEECCCTT-EEEEEEESSSC-------CEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred CCceEEeccccchhhhCCCC-cEEEEEECCCC-------cEEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHHh
Confidence 55 3567899987543333 2678888 654 56777643 899999999998632 89999986
No 13
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.93 E-value=4.8e-26 Score=193.53 Aligned_cols=186 Identities=19% Similarity=0.199 Sum_probs=129.6
Q ss_pred CEEEEEecCCCh--HHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHH----HHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMA----RLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~--~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~----~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
|||+|+++++.. .++.++|++.|+++++++..+++.++|+||+|||.+.... .+.+...+.++|++++++++|+
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pi 82 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLI 82 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTCCCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEE
T ss_pred cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCCCcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEE
Confidence 589999987764 5788999999999999987667789999999998542111 1222245678999999999999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
||||+|+|+|+.+ |++++++.+++. .+. +.||+.++... .+++++..+++
T Consensus 83 lgIC~G~qlLa~a------------Gll~g~v~~~~~----------~~~-~~g~~~v~~~~-----~~~~l~~~~~~~~ 134 (213)
T 3d54_D 83 MGICNGFQILIEM------------GLLKGALLQNSS----------GKF-ICKWVDLIVEN-----NDTPFTNAFEKGE 134 (213)
T ss_dssp EECHHHHHHHHHH------------TSSCSEEECCSS----------SSC-BCCEEEEEECC-----CSSTTSTTSCTTC
T ss_pred EEECHHHHHHHHc------------CCCCCCeecCCC----------Cce-EeeeEEEEeCC-----CCCceeeccCCCC
Confidence 9999999999987 223356655321 112 56777654310 14678877764
Q ss_pred CEEE--EE---eeecCCcccCCCcceeeeecccCCCCC-ceEEEEE--eCCEEEEEECccCCC-----ch---HHHHHHH
Q 024993 153 DVDV--LA---DYPVPSNKVLYSSSTVEIQEENAMPEK-KVIVAVR--QGNLLGTAFHPELTA-----DT---RWHSYFL 216 (259)
Q Consensus 153 ~~~~--~H---s~~~~~~~~~~~~~lA~s~~~~~~~~~-~~~~~~~--~~~v~gvQfHPE~~~-----~~---~i~~nfl 216 (259)
.+++ +| +|++.+ .. ..++|++++. ++. ..++++. +++++|+|||||++. +. +||+||+
T Consensus 135 ~~~~~~~H~~~s~~~~~--~~-~~~~a~~~~~---ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~ 208 (213)
T 3d54_D 135 KIRIPIAHGFGRYVKID--DV-NVVLRYVKDV---NGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSIL 208 (213)
T ss_dssp EEEEECCBSSCEEECSS--CC-EEEEEESSCS---SCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHH
T ss_pred EEEEEeecCceEEEecC--CC-cEEEEEcCCC---CCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHH
Confidence 4666 68 887743 22 2566776551 111 2466664 568999999999876 22 8999999
Q ss_pred HHHH
Q 024993 217 KMMS 220 (259)
Q Consensus 217 ~~~~ 220 (259)
++|+
T Consensus 209 ~~~~ 212 (213)
T 3d54_D 209 NYLK 212 (213)
T ss_dssp HHCC
T ss_pred HHhh
Confidence 8864
No 14
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.93 E-value=2.3e-26 Score=192.78 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=122.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCC---CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~---~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
|.|+|+++.+++. ++.++|+++|+++++++..+ ++ .++|+||+|||+ .. .. .....+.|+++.+.++|+
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~-~~---~~~~~~~i~~~~~~~~Pi 75 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SL-EN---TGNCEKVLEHYDEFNVPI 75 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CT-TC---CTTHHHHHHTGGGTCSCE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-Ch-hh---hhhHHHHHHHHhhCCCeE
Confidence 7799999987665 56799999999999987654 33 259999999996 22 11 123467787776889999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCE
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~ 154 (259)
||||+|+|+|+.++++ ++.+. +.+++||+.+... ..+++|.++++.+
T Consensus 76 lGIC~G~Q~l~~~~gg--------------~v~~~-------------~~~~~G~~~~~~~------~~~~l~~~~~~~~ 122 (189)
T 1wl8_A 76 LGICLGHQLIAKFFGG--------------KVGRG-------------EKAEYSLVEIEII------DEXEIFKGLPKRL 122 (189)
T ss_dssp EEETHHHHHHHHHHTC--------------EEEEC-------------SCCSCEEEEEEES------CC--CCTTSCSEE
T ss_pred EEEcHHHHHHHHHhCC--------------ceecC-------------CCcccCceeEEEe------cCchHHhCCCCce
Confidence 9999999999999963 44331 2235677654221 2457777777677
Q ss_pred EEEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEEe-C-CEEEEEECccCCCch---HHHHHHHHHHHh
Q 024993 155 DVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQ-G-NLLGTAFHPELTADT---RWHSYFLKMMSE 221 (259)
Q Consensus 155 ~~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~~-~-~v~gvQfHPE~~~~~---~i~~nfl~~~~~ 221 (259)
.++|+++... .+.. ..++|+++++ .+++++. + +++|+|||||++.++ +++++|++.|++
T Consensus 123 ~~~~~h~~~v~~l~~~-~~vla~s~~g-------~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~~~~~ 188 (189)
T 1wl8_A 123 KVWESHMDEVKELPPK-FKILARSETC-------PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLCGE 188 (189)
T ss_dssp EEEECCSEEEEECCTT-EEEEEEESSC-------SCSEEEESSSCEEEESSCTTSTTSTTHHHHHHHHHHHHCC
T ss_pred EEEEEeeeehhhCCCC-cEEEEEcCCC-------CEEEEEeCCceEEEEecCCCcCCCcchHHHHHHHHHHHhh
Confidence 7778876432 2222 2678887764 4566663 3 499999999987542 899999998753
No 15
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.93 E-value=9.2e-26 Score=195.77 Aligned_cols=181 Identities=12% Similarity=0.074 Sum_probs=122.4
Q ss_pred CEEEEEecCC--ChHHHHHHHHhCCCeEEEeCC------CCCCCCcCEEEEcCCchhH---HHHHHhhCC--HHHHHHHH
Q 024993 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT---MARLAEYHN--LFPALREF 67 (259)
Q Consensus 1 mki~vl~~~G--~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~iil~GG~~~~---~~~l~~~~~--~~~~i~~~ 67 (259)
|||+||+... +...+.++|++.|+++++++. ++++.++|+||++||+.+. .+...+... ..++|+++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKA 80 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHH
Confidence 9999998532 466788999999999988753 2346689999999986431 111111111 46889999
Q ss_pred HHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCccc
Q 024993 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (259)
Q Consensus 68 ~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~ 147 (259)
+++++|+||||+|+|+|+.++|+ ++.+. +.+++||+.++... .+ .++++|
T Consensus 81 ~~~~~PvLGIClG~QlL~~~~Gg--------------~v~~~-------------~~~~~G~~~v~~~~-~~--~~~~l~ 130 (236)
T 3l7n_A 81 AKSEKIIVGVCLGAQLMGVAYGA--------------DYLHS-------------PKKEIGNYLISLTE-AG--KMDSYL 130 (236)
T ss_dssp HHTTCEEEEETHHHHHHHHHTTC--------------CCEEE-------------EEEEEEEEEEEECT-TG--GGCGGG
T ss_pred HHcCCCEEEEchHHHHHHHHhCC--------------EEecC-------------CCceeeeEEEEEcc-Cc--ccChHH
Confidence 99999999999999999999963 22221 12355666543211 00 146788
Q ss_pred ccCCCCE--EEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE-eCCEEEEEECccCCCchHHHHHHHHHHHhc
Q 024993 148 LDVGPDV--DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTADTRWHSYFLKMMSEV 222 (259)
Q Consensus 148 ~~~~~~~--~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~-~~~v~gvQfHPE~~~~~~i~~nfl~~~~~~ 222 (259)
.++++.+ +.+|++....+ .. ..++|+++++ .+++++ .++++|+|||||++ ..++++|++.++++
T Consensus 131 ~~~~~~~~v~~~H~~~~~lp-~~-~~vla~s~~~-------~~~a~~~~~~v~gvQfHPE~~--~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 131 SDFSDDLLVGHWHGDMPGLP-DK-AQVLAISQGC-------PRQIIKFGPKQYAFQCHLEFT--PELVAALIAQEDDL 197 (236)
T ss_dssp TTSCSEEEEEEEEEEECCCC-TT-CEEEEECSSC-------SCSEEEEETTEEEESSBSSCC--HHHHHHHHHHCSCH
T ss_pred hcCCCCcEEEEecCCcccCC-Ch-heEEEECCCC-------CEEEEEECCCEEEEEeCCCCC--HHHHHHHHHhhhhh
Confidence 8877654 45677653222 22 3688888764 234444 56899999999998 47899999876643
No 16
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.92 E-value=4e-25 Score=185.80 Aligned_cols=173 Identities=17% Similarity=0.141 Sum_probs=108.9
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC---CC----C--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHc
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD---QL----Q--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~---~l----~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~ 70 (259)
|||+||++.+++.. +.++|+++|+++++++... ++ . +.+++|++||+....+ .++...+.+++++
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~-----~~~~~~l~~~~~~ 75 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE-----AGCMPELLTRLRG 75 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGG-----STTHHHHHHHHBT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchh-----CchHHHHHHHHhc
Confidence 69999999899875 5799999999999987652 22 1 2445777776543221 1222334445678
Q ss_pred CCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccC
Q 024993 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (259)
Q Consensus 71 g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~ 150 (259)
++|+||||+|||+|+.++|+. +.+.+ .+..|+... .. ..++++|.++
T Consensus 76 ~~PilGIC~G~Qll~~~~Gg~--------------v~~~~-------------~~~~g~~~~----~~--~~~~~l~~~~ 122 (192)
T 1i1q_B 76 KLPIIGICLGHQAIVEAYGGY--------------VGQAG-------------EILHGKATS----IE--HDGQAMFAGL 122 (192)
T ss_dssp TBCEEEETHHHHHHHHHTSCC--------------CCC----------------CCSSEEEE----EE--ECCCGGGTTS
T ss_pred CCCEEEECcChHHHHHHhCCE--------------EEeCC-------------CcEecceeE----Ee--cCCChHHhcC
Confidence 999999999999999999631 11100 001111110 00 0135677776
Q ss_pred CCC--EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCc---hHHHHHHHHHHH
Q 024993 151 GPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD---TRWHSYFLKMMS 220 (259)
Q Consensus 151 ~~~--~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~---~~i~~nfl~~~~ 220 (259)
++. ++++|++.+...+... .++|.++ ..+++++ ++++||+|||||++.. .++++||++++.
T Consensus 123 ~~~~~v~~~H~~~v~~lp~~~-~v~a~~~--------~~~~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 123 ANPLPVARYHSLVGSNVPAGL-TINAHFN--------GMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp CSSEEEEECCC---CCCCTTC-EEEEEET--------TEEEEEEETTTTEEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred CCCcEEEechhhHhhhCCCcc-EEEECCC--------CcEEEEEECCCCEEEEEccCcccCCcccHHHHHHHHHHHh
Confidence 554 5667888775444332 5666432 3677777 5689999999998843 289999998864
No 17
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.92 E-value=1.2e-24 Score=190.88 Aligned_cols=183 Identities=15% Similarity=0.191 Sum_probs=118.1
Q ss_pred HHHHHHHhCCCeEEEeCCCCC------CCCcCEEEEcCCch---hHHH-----H-----HHhhCCHHHHHHHHHHcCCcE
Q 024993 14 EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES---TTMA-----R-----LAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~------l~~~d~iil~GG~~---~~~~-----~-----l~~~~~~~~~i~~~~~~g~Pi 74 (259)
++.++|+++|+.+++++...+ ++++|+||++||.+ ..+. + ..+.....+.|++++++++|+
T Consensus 32 ~~~~~l~~aG~~pv~lp~~~~~~~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~Pi 111 (254)
T 3fij_A 32 RYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPI 111 (254)
T ss_dssp HHHHHHHHHTCEEEEECCCCGGGHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCE
Confidence 578899999999998875422 45899999999943 1110 0 000011357889999999999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCCE
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~~ 154 (259)
||||+|+|+|+.++|+. -.+.++.+++....+ . ....++.||+.+... .+++++..+++.+
T Consensus 112 LGIC~G~Qll~~a~Gg~---v~~~~~~~~~~~~~h--------~--~~~~~~~g~~~v~~~------~~s~l~~~~~~~~ 172 (254)
T 3fij_A 112 FAICRGMQLVNVALGGT---LYQDISQVETKALQH--------L--QRVDEQLGSHTIDIE------PTSELAKHHPNKK 172 (254)
T ss_dssp EEETHHHHHHHHHTTCC---EESSGGGSSSCCCCC--------B--CCSCTTSCCEEEEEC------TTSSGGGTCCTTE
T ss_pred EEECHHHHHHHHHhCCc---eecccccccCccccc--------c--CCCCCccceEEEEeC------CCChHHHhcCCcE
Confidence 99999999999998641 122333222211110 0 113456788776432 2456777666543
Q ss_pred EEEEeeec---CCcccCCCcceeeeecccCCCCCceEEEEEeC----CEEEEEECccCCCc-----hHHHHHHHHHHHhc
Q 024993 155 DVLADYPV---PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG----NLLGTAFHPELTAD-----TRWHSYFLKMMSEV 222 (259)
Q Consensus 155 ~~~Hs~~~---~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~----~v~gvQfHPE~~~~-----~~i~~nfl~~~~~~ 222 (259)
.+|+++. ...+.+ ..++|+++++ .+++++.. +++|+|||||++.. .+||++|++.|+.+
T Consensus 173 -~v~~~H~~~v~~l~~g-~~v~a~s~dg-------~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~ 243 (254)
T 3fij_A 173 -LVNSLHHQFIKKLAPS-FKVTARTADG-------MIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT 243 (254)
T ss_dssp -EECCBCSCEESSCCSS-EEEEEEETTC-------CEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSC
T ss_pred -EEEEeccchhhccCCC-cEEEEEeCCC-------cEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHH
Confidence 4455543 322222 2678887764 68888865 69999999999874 28999999999865
Q ss_pred CC
Q 024993 223 GE 224 (259)
Q Consensus 223 ~~ 224 (259)
+.
T Consensus 244 ~~ 245 (254)
T 3fij_A 244 MV 245 (254)
T ss_dssp C-
T ss_pred Hh
Confidence 43
No 18
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.92 E-value=2.3e-25 Score=195.13 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=122.2
Q ss_pred CEEEEEecC--CChHHHHHHHHhCCCeEEEeCC------CCCCCCcCEEEEcCCchhH---HHHHHhhCCHHHHHHHHHH
Q 024993 1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT---MARLAEYHNLFPALREFVK 69 (259)
Q Consensus 1 mki~vl~~~--G~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~iil~GG~~~~---~~~l~~~~~~~~~i~~~~~ 69 (259)
|||+||+.. .+...+.++|++.|+++++++. ++++.++|+||++||+.+. +.++. ...++|+++++
T Consensus 4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~~~~~~---~~~~~i~~~~~ 80 (250)
T 3m3p_A 4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMP---TLLALIRDAVA 80 (250)
T ss_dssp CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHH---HHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCcccccchHHH---HHHHHHHHHHH
Confidence 469999743 4577888999999999998762 2356789999999986432 23332 24678888888
Q ss_pred cCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCccccc
Q 024993 70 MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD 149 (259)
Q Consensus 70 ~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~ 149 (259)
.++|+||||+|+|+|+.++|+ ++.+. +.+++||+.++.... + ..+++| +
T Consensus 81 ~~~PvlGIC~G~Qll~~~lGG--------------~V~~~-------------~~~e~G~~~v~~~~~-~--~~~~l~-g 129 (250)
T 3m3p_A 81 QRVPVIGHCLGGQLLAKAMGG--------------EVTDS-------------PHAEIGWVRAWPQHV-P--QALEWL-G 129 (250)
T ss_dssp HTCCEEEETHHHHHHHHHTTC--------------CEEEE-------------EEEEEEEEEEEECSS-H--HHHHHH-S
T ss_pred cCCCEEEECHHHHHHHHHhCC--------------EEEeC-------------CCCceeeEEEEEecC-C--CCcccc-c
Confidence 999999999999999999963 44442 134678876543110 0 125777 6
Q ss_pred CCCC--EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe-CCEEEEEECccCCCchHHHHHHHHHHH
Q 024993 150 VGPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTADTRWHSYFLKMMS 220 (259)
Q Consensus 150 ~~~~--~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~-~~v~gvQfHPE~~~~~~i~~nfl~~~~ 220 (259)
+++. ++.+|++.+..+ .+ ..++|+++++ .+++++. +++||+|||||++. ..+++|++..+
T Consensus 130 ~~~~~~v~~~H~~~v~lp-~~-~~vlA~s~~~-------~~~a~~~~~~~~GvQfHPE~~~--~~~~~~l~~~~ 192 (250)
T 3m3p_A 130 TWDELELFEWHYQTFSIP-PG-AVHILRSEHC-------ANQAYVLDDLHIGFQCHIEMQA--HMVREWCSISP 192 (250)
T ss_dssp CSSCEEEEEEEEEEECCC-TT-EEEEEEETTE-------EEEEEEETTTEEEESSCTTCCH--HHHHHHHHHCG
T ss_pred CCCccEEEEEccceeecC-CC-CEEEEEeCCC-------CEEEEEECCeeEEEEeCCcCCH--HHHHHHHHhhH
Confidence 6554 566788887433 22 2688988764 5677764 68999999999975 55666665443
No 19
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=192.04 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=116.0
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEeCCCC---CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~---~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
||+||++.+.+. ++.++|+++|+++++++... ++ .++|+||+|||+...++.. . ..+ .+.+.++++|+|
T Consensus 26 ~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~~-~-~~~---~~~~~~~~~Pil 100 (218)
T 2vpi_A 26 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAED-A-PWF---DPAIFTIGKPVL 100 (218)
T ss_dssp CEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC----------C-CCC---CGGGGTSSCCEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCccccccc-c-hhH---HHHHHHcCCCEE
Confidence 699999977665 57799999999999887532 23 3599999999875433211 1 111 223346799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--C
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~ 153 (259)
|||+|+|+|+.++++ ++.+.+ ..+.||+.++.+ .++++|.++++ .
T Consensus 101 GIC~G~Qll~~~~GG--------------~v~~~~-------------~~~~G~~~v~~~------~~~~l~~~l~~~~~ 147 (218)
T 2vpi_A 101 GICYGMQMMNKVFGG--------------TVHKKS-------------VREDGVFNISVD------NTCSLFRGLQKEEV 147 (218)
T ss_dssp EETHHHHHHHHHTTC--------------CEEEEE-------------ECSCEEEEEEEC------TTSGGGTTCCSEEE
T ss_pred EEcHHHHHHHHHhCC--------------ceEeCC-------------CCcccEEEEEEc------cCChhHhcCCCCcE
Confidence 999999999999852 343321 135677655321 24678877764 4
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHH-HHHH
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFL-KMMS 220 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl-~~~~ 220 (259)
++++|++.+...+.+ ..++|++ + ..+++++ .++++|+|||||++.++ +|++||+ +.|+
T Consensus 148 v~~~H~~~v~~l~~~-~~vlA~s-~-------~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 148 VLLTHGDSVDKVADG-FKVVARS-G-------NIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAG 211 (218)
T ss_dssp EEECSEEEESSCCTT-CEEEEEE-T-------TEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTC
T ss_pred EeehhhhHhhhcCCC-CEEEEEc-C-------CeEEEEEECCCCEEEEEcCCCCCCChhHHHHHHHHHHHHhC
Confidence 567799887544333 2677887 3 2688887 56899999999988642 8999999 6654
No 20
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.91 E-value=8.9e-25 Score=190.07 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=122.6
Q ss_pred CEEEEEec--CCChHHHHHHHHhCCCeEEEeCC------CCCCCCcCEEEEcCCchhH-----HHHHHhhCCHHHHHHHH
Q 024993 1 MVVGVLAL--QGSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREF 67 (259)
Q Consensus 1 mki~vl~~--~G~~~~~~~~L~~~G~~v~~~~~------~~~l~~~d~iil~GG~~~~-----~~~l~~~~~~~~~i~~~ 67 (259)
.+|+||+. .++..++.++|+..|++++++.. ++++.++|+||+|||+... +.++. ...+.|+++
T Consensus 13 ~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~---~~~~~i~~~ 89 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK---YEFQLIEEI 89 (239)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH---HHHHHHHHH
T ss_pred eEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHH---HHHHHHHHH
Confidence 36888874 24566888999999999987643 2245679999999986322 23332 246888888
Q ss_pred HHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCC-CcccccCCCCccceeeeecCcc
Q 024993 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSV-PALASQEGGPETFRGVFIRAPA 146 (259)
Q Consensus 68 ~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~pl 146 (259)
+++++|+||||+|+|+|+.++++ ++.+. +. +++||+.++.. .++++
T Consensus 90 ~~~~~PiLGIC~G~QlL~~alGG--------------~v~~~-------------~~g~~~G~~~v~~~------~~~~l 136 (239)
T 1o1y_A 90 LKKEIPFLGICLGSQMLAKVLGA--------------SVYRG-------------KNGEEIGWYFVEKV------SDNKF 136 (239)
T ss_dssp HHHTCCEEEETHHHHHHHHHTTC--------------CEEEC-------------TTCCEEEEEEEEEC------CCCGG
T ss_pred HHCCCCEEEEchhHHHHHHHcCC--------------eEecC-------------CCCCccccEEEEEC------CCCch
Confidence 88999999999999999999952 44432 12 45677654311 24678
Q ss_pred cccCCCC--EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCchHHHHHHHHHHHhc
Q 024993 147 VLDVGPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEV 222 (259)
Q Consensus 147 ~~~~~~~--~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~~i~~nfl~~~~~~ 222 (259)
|.++++. ++++|++.+..++ . ..++|+++++ .+++++.++++|+|||||++. .++++|++.+++.
T Consensus 137 ~~~~~~~~~~~~~H~~~v~lp~-~-~~vlA~s~~~-------~iea~~~~~i~gvQfHPE~~~--~~~~~~~~~~~~~ 203 (239)
T 1o1y_A 137 FREFPDRLRVFQWHGDTFDLPR-R-ATRVFTSEKY-------ENQGFVYGKAVGLQFHIEVGA--RTMKRWIEAYKDE 203 (239)
T ss_dssp GTTSCSEEEEEEEESEEECCCT-T-CEEEEECSSC-------SCSEEEETTEEEESSBSSCCH--HHHHHHHHHTHHH
T ss_pred HHhCCCCceeEeecCCccccCC-C-CEEEEEcCCC-------CEEEEEECCEEEEEeCccCCH--HHHHHHHHHhHHH
Confidence 8777654 4567888774322 2 2678887664 356888777999999999975 5889998765543
No 21
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.91 E-value=6.6e-25 Score=210.75 Aligned_cols=170 Identities=19% Similarity=0.253 Sum_probs=115.9
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEeC---CCCCCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIR---KPDQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~G~~v~~~~---~~~~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
||+||++.++|. ++.++|+++|+.+++++ +.+++. ++|+||+|||+.+..+.- .....+.+.+.++|+|
T Consensus 12 ~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~~-----~~~~~~~~~~~~~PvL 86 (527)
T 3tqi_A 12 RILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLSH-----TLRAPAFIFEIGCPVL 86 (527)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC--------------CCCSTTTSSSCEE
T ss_pred eEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccCC-----ChhhHHHHHhcCCCEE
Confidence 799999988887 56799999999988874 234554 459999999976543211 1122234456799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC---
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--- 152 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--- 152 (259)
|||+|||+|+.++|+ ++.+. ..++.||+.+... .++++|.++++
T Consensus 87 GIC~G~Qlla~~lGG--------------~V~~~-------------~~~e~G~~~v~~~------~~~~l~~~l~~~~~ 133 (527)
T 3tqi_A 87 GICYGMQTMAYQLGG--------------KVNRT-------------AKAEFGHAQLRVL------NPAFLFDGIEDQVS 133 (527)
T ss_dssp EETHHHHHHHHHSSS--------------CBC------------------CEEEEEEEES------SCTTTTSSCCSBCC
T ss_pred EEChHHHHHHHHcCC--------------eEEeC-------------CCccccceEEEEc------CCChhhcCCccccc
Confidence 999999999999863 22221 1235566654321 13577877754
Q ss_pred -------CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHHH
Q 024993 153 -------DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 153 -------~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
.+++.|++.+...+.+. .++|+++++ .+++++ .+++||+|||||+++++ +|++||+.
T Consensus 134 ~~~~~~~~v~~~H~d~v~~lp~g~-~v~A~s~~~-------~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~ 202 (527)
T 3tqi_A 134 PQGEPLLDVWMSHGDIVSELPPGF-EATACTDNS-------PLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVI 202 (527)
T ss_dssp TTSCCEEEEEEESSSCBCSCCTTC-EEEEEETTE-------EEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHH
T ss_pred cccccceEEEEEcccchhccCCCC-EEEEEeCCC-------cEEEEEcCCCCEEEEEeccccccccccchhhhhhhh
Confidence 36677888776555443 678887653 577776 46899999999998763 89999984
No 22
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.90 E-value=1.4e-23 Score=193.38 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=116.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCCC---CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~~---~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
|||+|+++ |...++.++|+++|+++++++... ++ .++|+|||+||+.+..+. ....+.|++++++++|+|
T Consensus 191 ~~V~viD~-G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~----~~~~~~Ir~~~~~~~PIL 265 (379)
T 1a9x_B 191 FHVVAYDF-GAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC----DYAITAIQKFLETDIPVF 265 (379)
T ss_dssp EEEEEEES-SCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC----HHHHHHHHHHTTSCCCEE
T ss_pred CEEEEEEC-CChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHH----HHHHHHHHHHHHcCCCEE
Confidence 47999998 766789999999999999886432 22 369999999986533211 113578888888899999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccC-CCCE
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDV 154 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~-~~~~ 154 (259)
|||+|||+|+.++|+ ++.+.+ .+|.||+. |+. .+ ..++
T Consensus 266 GIClG~QLLa~A~GG--------------~v~k~~-------------~gh~g~n~-------------pv~-~~~~g~v 304 (379)
T 1a9x_B 266 GICLGHQLLALASGA--------------KTVKMK-------------FGHHGGNH-------------PVK-DVEKNVV 304 (379)
T ss_dssp EETHHHHHHHHHTTC--------------CEEEEE-------------EEEEEEEE-------------EEE-ETTTTEE
T ss_pred EECchHHHHHHHhCc--------------EEEecc-------------cccccCce-------------eeE-ecCCCcE
Confidence 999999999999963 333321 22334321 221 11 1233
Q ss_pred E---EEEeeecCC--cccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch----HHHHHHHHHHHhcC
Q 024993 155 D---VLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT----RWHSYFLKMMSEVG 223 (259)
Q Consensus 155 ~---~~Hs~~~~~--~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~----~i~~nfl~~~~~~~ 223 (259)
+ ..|+|.+.. .+.. ..+++++.. +..+++++ ..++||+|||||++..+ .||++|++.+++++
T Consensus 305 ~its~~H~~aV~~~~Lp~~-~~v~a~s~~------Dg~ieai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~~~ 377 (379)
T 1a9x_B 305 MITAQNHGFAVDEATLPAN-LRVTHKSLF------DGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIEQYR 377 (379)
T ss_dssp EEEEEEEEEEECSTTCCTT-EEEEEEETT------TCCEEEEEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHHHHHH
T ss_pred EEEecCccceEecccCCCC-eEEEEEeCC------CCcEEEEEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHHHHhh
Confidence 3 369998864 2222 256676622 13578886 45899999999988642 79999999998764
No 23
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.90 E-value=1.7e-23 Score=201.95 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=124.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCC---CCCCC--CcCEEEEcCCchhHHHHHHhhCCH-HHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNL-FPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~---~~~l~--~~d~iil~GG~~~~~~~l~~~~~~-~~~i~~~~~~g~P 73 (259)
+||+||++.++|. ++.++|+++|+.+++++. .+++. ++|+||+|||+.+..+.-. ..+ ...++.+.++++|
T Consensus 8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~~--~~~~~~l~~~a~~~g~P 85 (556)
T 3uow_A 8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGS--PHLKKEVFEYFLEKKIP 85 (556)
T ss_dssp CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTTC--CCCCHHHHHHHHHTTCC
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccCC--cchhHHHHHHhhhcCCC
Confidence 4799999987777 677999999999888753 23443 7899999999754322110 112 2345555677999
Q ss_pred EEEEchhHHHHHHhhcccc-CCCcccccceeeeEEeec---cCCcccccccccCCCcccccCCCCccceeeeecCccccc
Q 024993 74 VWGTCAGLIFLANKAVGQK-LGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD 149 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~-~g~~~~lG~~~~~v~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~ 149 (259)
+||||+|||+|+.++|+.. .......|..+..+.... ..+-+..|.. ..++++|...+... ...+++|.+
T Consensus 86 vLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~--~~~~mg~~~n~~~~----~~~~~Lf~g 159 (556)
T 3uow_A 86 IFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGD--SSSAMDLYSNYKLM----NETCCLFEN 159 (556)
T ss_dssp EEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC-----CCHHHHHTTSCCC----C--CGGGTT
T ss_pred EEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceecccc--cccccccccccccc----cccchhhcc
Confidence 9999999999999996421 000112232222221100 0000001110 12467773222110 125688988
Q ss_pred C-CC--CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEEe--CCEEEEEECccCCCch---HHHHHHH
Q 024993 150 V-GP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTADT---RWHSYFL 216 (259)
Q Consensus 150 ~-~~--~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v~gvQfHPE~~~~~---~i~~nfl 216 (259)
+ ++ .++++|++.+...+.+. .++|+++++ .+++++. +++||+|||||+++++ +|++||+
T Consensus 160 l~~~~~~v~~~H~d~V~~lp~g~-~vlA~s~~~-------~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl 226 (556)
T 3uow_A 160 IKSDITTVWMNHNDEVTKIPENF-YLVSSSENC-------LICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFA 226 (556)
T ss_dssp CCSSEEEEEEEEEEEEEECCTTC-EEEEEETTE-------EEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHH
T ss_pred cccCceEEEEEccceeeccCCCc-EEEEEeCCC-------CEEEEEECCCCEEEEEcCCCCCccccchHHHHHHH
Confidence 8 55 46678998875444443 688888764 5777764 6899999999999873 8999998
No 24
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.89 E-value=2.3e-24 Score=206.90 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=118.6
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCC---CCCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---~~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
+||+|+++.++|.. +.++|+++|+.+++++.. +++. ++|+||+|||+.+.++... ..+. +.+.+.++|+
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~~--~~~~---~~~~~~g~Pv 82 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENS--PRAP---QYVFEAGVPV 82 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTC--CCCC---GGGGTSSSCE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccCC--cchH---HHHHHCCCCE
Confidence 47999999888874 669999999998887543 2333 4699999999765433211 1111 2334679999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~-- 152 (259)
||||+|||+|+.++|+ ++.+. ..++.||+.+... .++++|.+++.
T Consensus 83 LGIC~G~Qlla~~~GG--------------~V~~~-------------~~~e~G~~~v~~~------~~~~L~~~l~~~~ 129 (525)
T 1gpm_A 83 FGVCYGMQTMAMQLGG--------------HVEAS-------------NEREFGYAQVEVV------NDSALVRGIEDAL 129 (525)
T ss_dssp EEETHHHHHHHHHHTC--------------EEECC-------------SSCEEEEEEEEEC------SCCTTTTTCCSEE
T ss_pred EEEChHHHHHHHHcCC--------------EEEeC-------------CCcccceEEEEeC------CCCHhhccCcccc
Confidence 9999999999999963 44332 1235566654321 13577777654
Q ss_pred --------CEEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHHH
Q 024993 153 --------DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLK 217 (259)
Q Consensus 153 --------~~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl~ 217 (259)
.++++|++.+...+.+. .++|+++++ .+++++ .+++||+|||||+++++ +|++||+.
T Consensus 130 ~~~~~~~~~v~~~H~~~V~~lp~g~-~v~A~s~~~-------~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~ 199 (525)
T 1gpm_A 130 TADGKPLLDVWMSHGDKVTAIPSDF-ITVASTESC-------PFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVR 199 (525)
T ss_dssp CTTSCEEEEEEEEECSEEEECCTTC-EEEEECSSC-------SCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHH
T ss_pred ccccccceEEEEEccceeeeCCCCC-EEEEECCCC-------CEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHH
Confidence 36678888875444443 788887664 356666 46899999999998763 89999994
No 25
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.89 E-value=4.3e-24 Score=204.09 Aligned_cols=172 Identities=20% Similarity=0.285 Sum_probs=119.7
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEEeCCC---CCCC--CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~---~~l~--~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
.|+||++.++|. ++.++|+++|+.+++++.. +++. ++|+||+|||+.+.++... ..+. +.+.+.++|+|
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~--~~~~---~~~~~~~~PvL 75 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA--PRPD---PRLFSSGLPLL 75 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTC--CCCC---GGGGCSSCCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCC--cchH---HHHHhCCCCEE
Confidence 189999988887 5679999999988887532 2333 4599999999765432211 1111 23346799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCC--C
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~ 153 (259)
|||+|||+|+.++|+ ++.+. ..++.||+.++. .++++|.++++ .
T Consensus 76 GIC~G~Qlla~~~GG--------------~v~~~-------------~~~e~G~~~v~~-------~~~~l~~~~~~~~~ 121 (503)
T 2ywb_A 76 GICYGMQLLAQELGG--------------RVERA-------------GRAEYGKALLTR-------HEGPLFRGLEGEVQ 121 (503)
T ss_dssp EETHHHHHHHHTTTC--------------EEECC----------------CEEEEECSE-------ECSGGGTTCCSCCE
T ss_pred EECHHHHHHHHHhCC--------------eEeeC-------------CCCccceEEEEe-------cCcHHhhcCCCccE
Confidence 999999999999963 44432 123567776643 12678887754 4
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHHHHHH
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFLKMMS 220 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl~~~~ 220 (259)
++++|++.+...+.+. .++|+++++ .+++++ .+++||+|||||+++++ +|++||++.|.
T Consensus 122 v~~~H~~~v~~lp~g~-~v~A~s~~~-------~i~ai~~~~~~~~gvQFHPE~~~~~~g~~ll~~F~~~~~ 185 (503)
T 2ywb_A 122 VWMSHQDAVTAPPPGW-RVVAETEEN-------PVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAG 185 (503)
T ss_dssp EEEECSCEEEECCTTC-EEEEECSSC-------SCSEEECTTSSEEEESBCTTSTTSTTHHHHHHHHHHHTT
T ss_pred EEEECCCccccCCCCC-EEEEEECCC-------CEEEEEeCCCCEEEEecCCCcccccccHHHHHHHHHHhh
Confidence 7778988875444443 788887664 456665 46899999999998763 89999996663
No 26
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.89 E-value=1.3e-23 Score=205.56 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=118.5
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC--CCCCcCEEEEcCCchhH----HHHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD--QLQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~--~l~~~d~iil~GG~~~~----~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
|+|+|+++.++|.. +.++|++.|+++++++... ++.++|+||++||+.+. ..++. .+.++|+++++.++|
T Consensus 447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~~~~~DgIIlsGGPg~p~d~~~p~i~---~~~~lI~~a~~~~iP 523 (645)
T 3r75_A 447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIA---RLYAWLRHLIDEGKP 523 (645)
T ss_dssp CEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCCGGGCSEEEECCCSSCTTCTTSHHHH---HHHHHHHHHHHHTCC
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCcccccCCCEEEECCCCCChhhhhhhhHH---HHHHHHHHHHHCCCC
Confidence 68999999888875 6689999999999886543 34589999998885322 12332 245778888888999
Q ss_pred EEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC
Q 024993 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (259)
Q Consensus 74 iLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~ 153 (259)
+||||+|||+|+.++|+ ++.+. +.++.||+..- . ...++++.+.+..
T Consensus 524 iLGIClG~QlLa~alGG--------------~V~~~-------------~~~~~G~~~~i----~--~~~~~l~~~~~~~ 570 (645)
T 3r75_A 524 FMAVCLSHQILNAILGI--------------PLVRR-------------EVPNQGIQVEI----D--LFGQRERVGFYNT 570 (645)
T ss_dssp EEEETHHHHHHHHHTTC--------------CEEEE-------------EEEEEEEEEEE----E--ETTEEEEEEEEEE
T ss_pred EEEECHHHHHHHHHhCC--------------EEEcC-------------CCcccccceEE----e--eecCcceecCCCc
Confidence 99999999999999963 33321 11223433210 0 0123444433222
Q ss_pred EEE--EEeeecCCcccCCCcceeeeecccCCCCCceEEEEEeCCEEEEEECccCCCch---HHHHHHHHHHHhcCCCc
Q 024993 154 VDV--LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT---RWHSYFLKMMSEVGEGT 226 (259)
Q Consensus 154 ~~~--~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~~v~gvQfHPE~~~~~---~i~~nfl~~~~~~~~~~ 226 (259)
+.+ +|...+...+.+ ..++|+++++ .+++++++++||+|||||...++ .|++||++++...++..
T Consensus 571 ~~v~~~h~~~~~~lp~g-~~v~A~s~dg-------~i~Ai~~~~~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~~~~~ 640 (645)
T 3r75_A 571 YVAQTVRDEMDVDGVGT-VAISRDPRTG-------EVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREKRM 640 (645)
T ss_dssp EEEBCSCSEEEETTTEE-EEEEECTTTC-------BEEEEEETTEEEESSBTTSTTCTTHHHHHHHHHHHHTTTTC--
T ss_pred EEEEEehhhccccCCCC-eEEEEEcCCC-------cEEEEEcCCEEEEEeCCeecCCcchHHHHHHHHHHHHhccccc
Confidence 222 122222111222 2577776553 78999999999999999987653 89999999997665443
No 27
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.87 E-value=4.9e-23 Score=182.46 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=124.5
Q ss_pred EEEEE-ec----CCChHHHHHHHHhC----CCeEEEeCCC-------------CCCCCcCEEEEcCCchhHHHHHHhhCC
Q 024993 2 VVGVL-AL----QGSFNEHIAALKRL----GVKGVEIRKP-------------DQLQNVSSLIIPGGESTTMARLAEYHN 59 (259)
Q Consensus 2 ki~vl-~~----~G~~~~~~~~L~~~----G~~v~~~~~~-------------~~l~~~d~iil~GG~~~~~~~l~~~~~ 59 (259)
||+|+ ++ .++|.++.++|+.. ++++.+++.. +.+.++|+||+|||+.+. .+. .
T Consensus 10 ~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~--~~~---~ 84 (273)
T 2w7t_A 10 RIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNR--GVD---G 84 (273)
T ss_dssp EEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTT--THH---H
T ss_pred EEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCc--Cch---h
Confidence 78999 55 67999988887654 4556664321 124579999999996542 111 2
Q ss_pred HHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCC----C---------cccccceeeeEEeeccCCcccccccccCCCc
Q 024993 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLG----G---------QELVGGLDCTVHRNFFGSQIQSFEAELSVPA 126 (259)
Q Consensus 60 ~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g----~---------~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~ 126 (259)
..+.++.++++++|+||||+|||+|+.++|+...+ . .+.+++++....+ +. ...+
T Consensus 85 ~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~---------~~---~~~~ 152 (273)
T 2w7t_A 85 KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNK---------MG---ANMH 152 (273)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCS---------SC---BCCE
T ss_pred HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccc---------cC---Cccc
Confidence 35778888888999999999999999988752100 0 1111111111000 00 0115
Q ss_pred ccccCCCCccceeeeecCcccccCCC--CEEE--EEeeecCCc-----ccCCCcceeeeecccCCCCC-ceEEEEEeC--
Q 024993 127 LASQEGGPETFRGVFIRAPAVLDVGP--DVDV--LADYPVPSN-----KVLYSSSTVEIQEENAMPEK-KVIVAVRQG-- 194 (259)
Q Consensus 127 ~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~--~Hs~~~~~~-----~~~~~~~lA~s~~~~~~~~~-~~~~~~~~~-- 194 (259)
+||+.+.... .+++++..++. .+++ .|||.+.+. .+....++|+++++. +. .++++++..
T Consensus 153 ~g~~~v~~~~-----~~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~---~~g~~ieaie~~~~ 224 (273)
T 2w7t_A 153 LGACDVYIVE-----KSSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTF---SSRCRVEAVENPSL 224 (273)
T ss_dssp EEEEEEEECC-----TTSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTC---CTTCCEEEEECTTS
T ss_pred ccceEEEEec-----CCcHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcC---CCCCeEEEEEcCCC
Confidence 6777653210 02345443332 3555 467877542 112236778877620 01 378899854
Q ss_pred -CEEEEEECccCCCch----HHHHHHHHHHHhcCCCccCCCC
Q 024993 195 -NLLGTAFHPELTADT----RWHSYFLKMMSEVGEGTSSGGK 231 (259)
Q Consensus 195 -~v~gvQfHPE~~~~~----~i~~nfl~~~~~~~~~~~~~~~ 231 (259)
+++|+|||||++... .||+||+++|+++.+...+..+
T Consensus 225 p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~~~~~~~~~~ 266 (273)
T 2w7t_A 225 RFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKKDYVWPQKCS 266 (273)
T ss_dssp SSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTCCCCCCSSCC
T ss_pred CeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHHHHhhhhcCc
Confidence 477999999987643 7999999999987665554433
No 28
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.85 E-value=2e-22 Score=198.60 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=110.2
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC---CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~---~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
||+||++.++|.. +.++|+++|+.+++++... ++ .++|+||++||+.+..+.-. ..+. +...+.++|+|
T Consensus 31 ~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~--~~~~---~~i~~~g~PvL 105 (697)
T 2vxo_A 31 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDA--PWFD---PAIFTIGKPVL 105 (697)
T ss_dssp CEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------C--CCCC---GGGTTSSCCEE
T ss_pred EEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccc--hhHH---HHHHhCCCCEE
Confidence 6999999999986 4589999999998886532 33 47999999999865432211 1111 22345799999
Q ss_pred EEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCccceeeeecCcccccCCCC--
Q 024993 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (259)
Q Consensus 76 GIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (259)
|||+|||+|+.++|+ ++.+. +..+.||+.+... .++++|.++++.
T Consensus 106 GIC~G~QlLa~~lGG--------------~v~~~-------------~~~e~G~~~v~~~------~~~~Lf~~l~~~~~ 152 (697)
T 2vxo_A 106 GICYGMQMMNKVFGG--------------TVHKK-------------SVREDGVFNISVD------NTCSLFRGLQKEEV 152 (697)
T ss_dssp EEEHHHHHHHHHTTC--------------CBCC--------------------CEEEEEC------TTSGGGTTCCSEEE
T ss_pred EECHHHHHHHHHhCC--------------eEeec-------------CCCccceEEEEec------CCChhhhcCCccCc
Confidence 999999999999963 22211 1234566654321 145788877643
Q ss_pred EEEEEeeecCCcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEECccCCCch---HHHHHHH
Q 024993 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTADT---RWHSYFL 216 (259)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQfHPE~~~~~---~i~~nfl 216 (259)
++++|++.+...+.+. .++|+++ ..+++++ .+++||+|||||++.++ +|++||+
T Consensus 153 v~~~H~~~V~~lp~g~-~vlA~s~--------~~i~ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl 211 (697)
T 2vxo_A 153 VLLTHGDSVDKVADGF-KVVARSG--------NIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFL 211 (697)
T ss_dssp ECCCSSCCBSSCCTTC-EEEEEET--------TEEEEEEETTTTEEEESSCTTSSSSTTHHHHHHHHH
T ss_pred ceeecccceecCCCCe-EEEEEeC--------CceEEEEeCCCCEEEEEecccCCCCccchhhhhhhh
Confidence 5567888776544443 6788763 2678887 56899999999998653 8999998
No 29
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.84 E-value=9.9e-21 Score=170.87 Aligned_cols=189 Identities=16% Similarity=0.275 Sum_probs=115.5
Q ss_pred EEEEEecCCCh------------HHHHHHHHhCCCeEEEeCCCCC-------CCCcCEEEEcCCchh----HHHHHHhhC
Q 024993 2 VVGVLALQGSF------------NEHIAALKRLGVKGVEIRKPDQ-------LQNVSSLIIPGGEST----TMARLAEYH 58 (259)
Q Consensus 2 ki~vl~~~G~~------------~~~~~~L~~~G~~v~~~~~~~~-------l~~~d~iil~GG~~~----~~~~l~~~~ 58 (259)
+|+|+...+.. .++.++|+++|+++++++...+ ++++|+||+|||..+ .+..+. .
T Consensus 32 ~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~--~ 109 (315)
T 1l9x_A 32 IIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVA--K 109 (315)
T ss_dssp EEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHH--H
T ss_pred EEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHH--H
Confidence 58888654332 2578999999999999876432 347899999998522 122221 1
Q ss_pred CHHHHHHHHHHc--CCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCcccccCCCCcc
Q 024993 59 NLFPALREFVKM--GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPET 136 (259)
Q Consensus 59 ~~~~~i~~~~~~--g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 136 (259)
.+.+.++++.++ ++|+||||+|||+|+.++|+. ..+...+ ... ...++. .+...
T Consensus 110 ~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~-----~~~~~~~---~~g------------~~~p~~---~~~~~- 165 (315)
T 1l9x_A 110 IFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE-----CLLTATD---TVD------------VAMPLN---FTGGQ- 165 (315)
T ss_dssp HHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSS-----CCCEEEE---EEE------------EEECCE---ECSTT-
T ss_pred HHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCc-----ccccccc---ccC------------CCCCee---eccCC-
Confidence 245666666655 499999999999999999742 1111111 000 000110 00000
Q ss_pred ceeeeecCcccccCCC----------CEEEEEeeecCC--------cccCCCcceeeeecccCCCCCceEEEEEe--CCE
Q 024993 137 FRGVFIRAPAVLDVGP----------DVDVLADYPVPS--------NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNL 196 (259)
Q Consensus 137 ~~~~~~~~pl~~~~~~----------~~~~~Hs~~~~~--------~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~v 196 (259)
..+++|..+++ -++.+|++.+.. .+.+ ..++|++.++ ....++++++ .++
T Consensus 166 -----~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g-~~v~A~s~dg----~ve~i~~i~~~~~~i 235 (315)
T 1l9x_A 166 -----LHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKF-FNVLTTNTDG----KIEFISTMEGYKYPV 235 (315)
T ss_dssp -----TTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHH-EEEEEEEESS----SCEEEEEEEESSSCE
T ss_pred -----CCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCC-CEEEEEcCCC----CEEEEEEeccCCCCE
Confidence 13456655532 245689998862 2222 2678888764 1244556554 589
Q ss_pred EEEEECccCCC-------c-----------hHHHHHHHHHHHhcCCCc
Q 024993 197 LGTAFHPELTA-------D-----------TRWHSYFLKMMSEVGEGT 226 (259)
Q Consensus 197 ~gvQfHPE~~~-------~-----------~~i~~nfl~~~~~~~~~~ 226 (259)
+|+|||||+.. + ..+|++|++.|++.+..-
T Consensus 236 ~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~~~f 283 (315)
T 1l9x_A 236 YGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHF 283 (315)
T ss_dssp EEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred EEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999732 1 279999999998665543
No 30
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.79 E-value=3.6e-20 Score=165.30 Aligned_cols=200 Identities=13% Similarity=0.081 Sum_probs=112.3
Q ss_pred CEEEEE-ecCC--C-hHHHHHHHHhCCC----eEEEeCCC-------------C-------CCCCcCEEEEcCCchhHHH
Q 024993 1 MVVGVL-ALQG--S-FNEHIAALKRLGV----KGVEIRKP-------------D-------QLQNVSSLIIPGGESTTMA 52 (259)
Q Consensus 1 mki~vl-~~~G--~-~~~~~~~L~~~G~----~v~~~~~~-------------~-------~l~~~d~iil~GG~~~~~~ 52 (259)
|||+|+ ++.+ + +.++.++|+++|+ ++++.... + .+.++|+||+|||+.+.
T Consensus 26 ~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~~-- 103 (289)
T 2v4u_A 26 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIR-- 103 (289)
T ss_dssp EEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSST--
T ss_pred eEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCch--
Confidence 589999 6522 3 7899999998765 34443211 1 15678999999997542
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCc-----cccccccc-----
Q 024993 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQ-----IQSFEAEL----- 122 (259)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~-----~~~~~~~~----- 122 (259)
.+. ...+.|++++++++|+||||+|+|+|+.++++... ++-+.... +++.. +..+....
T Consensus 104 ~~~---~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~------~~~~~~~~--e~~~~~~~~~i~~~~~h~~~~~~ 172 (289)
T 2v4u_A 104 GTL---GKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL------NLKDADST--EFRPNAPVPLVIDMPEHNPGNLG 172 (289)
T ss_dssp THH---HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS------CCTTEEES--TTCTTCSEEEEEECCBCCTTCSS
T ss_pred hHH---HHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc------ccccCccc--ccCccccccceecchhhcccccC
Confidence 121 24678888888999999999999999999975210 00001100 00000 00000000
Q ss_pred CCCcccccCCCCccceeeeecCcccccCCC--CEEEE--EeeecCCc-----ccCCCcceeeeecccCCCCCceEEEEEe
Q 024993 123 SVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL--ADYPVPSN-----KVLYSSSTVEIQEENAMPEKKVIVAVRQ 193 (259)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~--Hs~~~~~~-----~~~~~~~lA~s~~~~~~~~~~~~~~~~~ 193 (259)
.....||..+.... ..++++..++. .+... |+|.+.+. +.....++|+++++ ..+++++.
T Consensus 173 ~~~~~g~~~v~~~~-----~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg------~~ieaie~ 241 (289)
T 2v4u_A 173 GTMRLGIRRTVFKT-----ENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDG------DRMEIIEL 241 (289)
T ss_dssp CBCEEEEEEEEESC-----SCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTS------CSEEEEEE
T ss_pred CccccceEEEEEec-----CCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCC------CeEEEEEc
Confidence 00112333322100 02233333333 23333 45655431 10123677887653 23788875
Q ss_pred C--C-EEEEEECccCCCch----HHHHHHHHHHHhcCC
Q 024993 194 G--N-LLGTAFHPELTADT----RWHSYFLKMMSEVGE 224 (259)
Q Consensus 194 ~--~-v~gvQfHPE~~~~~----~i~~nfl~~~~~~~~ 224 (259)
. + ++|+|||||++..+ .+|++|++.|++...
T Consensus 242 ~~~p~~lGvQfHPE~~~~~~~~~~lf~~Fv~~~~~~~~ 279 (289)
T 2v4u_A 242 ANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAATGNLN 279 (289)
T ss_dssp SSSSCEEEESSBGGGGCBTTBCCHHHHHHHHHHHTCHH
T ss_pred CCCCeEEEEECCCCCCCCCCchHHHHHHHHHHHHhhhh
Confidence 3 4 56999999987642 799999998876543
No 31
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.77 E-value=2.2e-19 Score=172.08 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=108.5
Q ss_pred CCChHHHHHHHH----hCCCeEEEeCCC----------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 9 QGSFNEHIAALK----RLGVKGVEIRKP----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 9 ~G~~~~~~~~L~----~~G~~v~~~~~~----------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
.++|.++.++|. ..|+++.+++.. +.+.++|+||+|||+.+... . +..+.++.++++++|+
T Consensus 313 ~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~~--~---g~i~~ir~a~e~~iPi 387 (550)
T 1vco_A 313 PDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRGI--E---GKVRAAQYARERKIPY 387 (550)
T ss_dssp -CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTTH--H---HHHHHHHHHHHTTCCE
T ss_pred EecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcch--h---hhHHHHHHHHHCCCcE
Confidence 466766655554 456777776321 12568999999999754311 1 2357788888889999
Q ss_pred EEEchhHHHHHHhhccccCCCcccccceeeeEEe---eccCCcccccccccCCCcc------cccCCCCccceeeeecCc
Q 024993 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR---NFFGSQIQSFEAELSVPAL------ASQEGGPETFRGVFIRAP 145 (259)
Q Consensus 75 LGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~---~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~p 145 (259)
||||+|||+|+.++++. ...+.. +.... ....+.+..+....+++++ ||+.+.. .+++
T Consensus 388 LGICLGmQlL~~a~Gg~----v~~l~~--~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i-------~~~s 454 (550)
T 1vco_A 388 LGICLGLQIAVIEFARN----VAGLKG--ANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRI-------KPGT 454 (550)
T ss_dssp EEETHHHHHHHHHHHHH----TSCCTT--CEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEE-------CTTS
T ss_pred EEECcCHHHHHHHhCcc----cccCCc--cccccccCCCCCCeEEeccccccccccCCcccccceEEEE-------ccCc
Confidence 99999999999998742 111111 10000 0000000000011122332 5544321 1334
Q ss_pred ccccC-CCC-E--EEEEeeecC-----CcccCCCcceeeeecccCCCCCceEEEEEeC--CEE-EEEECccCCCch----
Q 024993 146 AVLDV-GPD-V--DVLADYPVP-----SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLL-GTAFHPELTADT---- 209 (259)
Q Consensus 146 l~~~~-~~~-~--~~~Hs~~~~-----~~~~~~~~~lA~s~~~~~~~~~~~~~~~~~~--~v~-gvQfHPE~~~~~---- 209 (259)
++..+ +.. + ...|.|.+. ..+.....++|++.++... ....+++++.. ++| |+|||||++..+
T Consensus 455 ~l~~iy~~~~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~-~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~ 533 (550)
T 1vco_A 455 LLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGR-GAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPS 533 (550)
T ss_dssp HHHHHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTB-STTCEEEEEETTSSSEEEESSCGGGGCBTTBCC
T ss_pred hhhHhcCCceeeeeccceEEEchHHhhccccCCeEEEEEeCCCCcc-CCCcEEEEEeCCCCEEEEEEeCCccCCCCCChH
Confidence 44333 122 2 223555442 1121112577877662000 02378999865 677 999999987653
Q ss_pred HHHHHHHHHHHhcCC
Q 024993 210 RWHSYFLKMMSEVGE 224 (259)
Q Consensus 210 ~i~~nfl~~~~~~~~ 224 (259)
.+|++|++++.++++
T Consensus 534 ~LF~~Fv~aa~~~~~ 548 (550)
T 1vco_A 534 PPFVGFVEAALAYQE 548 (550)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhcc
Confidence 899999999988764
No 32
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.71 E-value=1.1e-17 Score=158.28 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=111.3
Q ss_pred EEEEEe----cCCChHHHHHHHHhCC----CeEEE--eCCC----------CCCCCcCEEEEcCCchhHHHHHHhhCCHH
Q 024993 2 VVGVLA----LQGSFNEHIAALKRLG----VKGVE--IRKP----------DQLQNVSSLIIPGGESTTMARLAEYHNLF 61 (259)
Q Consensus 2 ki~vl~----~~G~~~~~~~~L~~~G----~~v~~--~~~~----------~~l~~~d~iil~GG~~~~~~~l~~~~~~~ 61 (259)
+||++- +.++|.|+.++|+..| .++.+ +... +++.++|+||+|||+.+. .. .+..
T Consensus 295 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~-~~----~g~i 369 (535)
T 3nva_A 295 NIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR-GA----EGKI 369 (535)
T ss_dssp EEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSST-TH----HHHH
T ss_pred EEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCc-cH----HHHH
Confidence 577765 4478999988887654 55555 3221 357789999999997543 11 1246
Q ss_pred HHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEee-cc--CCcccccccccCCCcc------cccCC
Q 024993 62 PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FF--GSQIQSFEAELSVPAL------ASQEG 132 (259)
Q Consensus 62 ~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~-~~--~~~~~~~~~~~~~~~~------g~~~~ 132 (259)
+.|+.++++++|+||||+|+|+|+.++++. .+|+-|...... +. .+.+..+.....+..+ |.+.+
T Consensus 370 ~~ir~a~~~~~PiLGIClG~Qll~va~Gg~------v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v 443 (535)
T 3nva_A 370 KAIKYAREHNIPFLGICFGFQLSIVEFARD------VLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKI 443 (535)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHHHHT------TTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEE
T ss_pred HHHHHHHHcCCcEEEECcchhHHHHHhhcc------ccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEE
Confidence 788888889999999999999999999752 122222322100 00 0000000000000111 22221
Q ss_pred CCccceeeeecCcccccC-CCC-EEE--EEeeecCC-----cccCCCcceeeeecccCCCCCceEEEEEe--CC-EEEEE
Q 024993 133 GPETFRGVFIRAPAVLDV-GPD-VDV--LADYPVPS-----NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GN-LLGTA 200 (259)
Q Consensus 133 ~~~~~~~~~~~~pl~~~~-~~~-~~~--~Hs~~~~~-----~~~~~~~~lA~s~~~~~~~~~~~~~~~~~--~~-v~gvQ 200 (259)
. +.++.++..+ +.. +.- .|+|.+.+ .....+.++|+++++ .+++++. .+ ++|+|
T Consensus 444 ~-------l~~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG-------~IEAIE~~~~pf~vGVQ 509 (535)
T 3nva_A 444 I-------LKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENG-------LVEIIELPSNKFFVATQ 509 (535)
T ss_dssp E-------ECTTSHHHHHHTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECTTC-------CEEEEECTTSSCEEEES
T ss_pred E-------EcCCCcHHHHhCCCeeeecccccceechHHHhhcccCCeEEEEEeCCC-------CEEEEEeCCCCcEEEEE
Confidence 1 1223333333 222 222 25555532 111223677887653 6888873 34 79999
Q ss_pred ECccCCCch----HHHHHHHHHHHh
Q 024993 201 FHPELTADT----RWHSYFLKMMSE 221 (259)
Q Consensus 201 fHPE~~~~~----~i~~nfl~~~~~ 221 (259)
||||+...+ .+|++|+++|.+
T Consensus 510 fHPE~~~~p~~~~~LF~~Fv~Aa~~ 534 (535)
T 3nva_A 510 AHPEFKSRPTNPSPIYLGFIRAVAS 534 (535)
T ss_dssp SCGGGGCCSSSCCHHHHHHHHHHTC
T ss_pred eCCEecCCCCChhHHHHHHHHHHHh
Confidence 999976542 899999998853
No 33
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.68 E-value=2.7e-16 Score=140.67 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=105.1
Q ss_pred CEEEEEecCCChHHHHHH----HHhCC--CeEEEeCCC--C-------------------CCCCcCEEEEcCCchh----
Q 024993 1 MVVGVLALQGSFNEHIAA----LKRLG--VKGVEIRKP--D-------------------QLQNVSSLIIPGGEST---- 49 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~----L~~~G--~~v~~~~~~--~-------------------~l~~~d~iil~GG~~~---- 49 (259)
|||+||++--......+. |.... ++++.++.. + +..++|++|++||+-+
T Consensus 36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~ 115 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF 115 (301)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence 799999986666655433 33333 355444321 1 1357999999998632
Q ss_pred -HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCccc
Q 024993 50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA 128 (259)
Q Consensus 50 -~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g 128 (259)
...++.+ +.+.|+.+.++++|+||||+|+|+++.++++.. .+.. .....|
T Consensus 116 ed~~yw~e---l~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~------------k~~~--------------~~K~~G 166 (301)
T 2vdj_A 116 EEVDYWEE---LKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQ------------KYPL--------------KEKMFG 166 (301)
T ss_dssp GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCC------------CEEE--------------EEEEEE
T ss_pred ccCchHHH---HHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCc------------cccC--------------CCCEEE
Confidence 2233332 456677777789999999999999777765310 0000 011223
Q ss_pred ccCCCCccceeeeecCcccccCCCCEEEEEeeecC-----CcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEE
Q 024993 129 SQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVP-----SNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAF 201 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~-----~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQf 201 (259)
|..++... ..+|++.++++.+...||.+.+ ....+.++++|.|+.+ -.+++. .++++++||
T Consensus 167 v~~~~~~~-----~~~pL~~g~~~~f~~phsr~~~~~~~~v~~~pga~vLA~S~~~-------~~~~~~~~~~~~~~vQg 234 (301)
T 2vdj_A 167 VFEHEVRE-----QHVKLLQGFDELFFAVHSRHTEVRESDIREVKELTLLANSEEA-------GVHLVIGQEGRQVFALG 234 (301)
T ss_dssp EEEEEECC-----SSCGGGTTCCSEEEEEEEEEEECCHHHHHTCTTEEEEEEETTT-------EEEEEEEGGGTEEEECS
T ss_pred EEEEEecC-----CCCccccCCCCceEeeeEeccCcCHHHccCCCCCEEEEeCCCC-------cceEEEecCCCEEEEEC
Confidence 32221100 2468888888788888875411 1111124789998764 245554 458999999
Q ss_pred CccCCCchHHHHHHHHHHH
Q 024993 202 HPELTADTRWHSYFLKMMS 220 (259)
Q Consensus 202 HPE~~~~~~i~~nfl~~~~ 220 (259)
|||++.+ .+.+.+.+.+.
T Consensus 235 HpEyd~~-~l~~ey~rd~~ 252 (301)
T 2vdj_A 235 HSEYSCD-TLKQEYERDRD 252 (301)
T ss_dssp CTTCCTT-HHHHHHHHHHH
T ss_pred CCCCCHH-HHHHHHHHHHH
Confidence 9999876 33334444443
No 34
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.68 E-value=3e-16 Score=140.86 Aligned_cols=176 Identities=10% Similarity=-0.061 Sum_probs=105.2
Q ss_pred CEEEEEecCCChHHHH----HHHHhCCC--eEEEeCCC-------------------C--CCCCcCEEEEcCCchh----
Q 024993 1 MVVGVLALQGSFNEHI----AALKRLGV--KGVEIRKP-------------------D--QLQNVSSLIIPGGEST---- 49 (259)
Q Consensus 1 mki~vl~~~G~~~~~~----~~L~~~G~--~v~~~~~~-------------------~--~l~~~d~iil~GG~~~---- 49 (259)
|||+||++--...... +.|..... +++.++.. + +..++|++|++||+-+
T Consensus 48 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~ 127 (312)
T 2h2w_A 48 LEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPF 127 (312)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCC
Confidence 7999999866655443 34444444 45444321 1 1357999999998632
Q ss_pred -HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhhccccCCCcccccceeeeEEeeccCCcccccccccCCCccc
Q 024993 50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA 128 (259)
Q Consensus 50 -~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~~~~~~g~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~~~~g 128 (259)
...++.+ +.+.|+.+.++++|+||||+|+|+++.++++.. .+.. .....|
T Consensus 128 ed~~yw~e---l~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~------------k~~~--------------~~K~~G 178 (312)
T 2h2w_A 128 EEVDYWEE---LTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIP------------KYEL--------------PQKLSG 178 (312)
T ss_dssp GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCC------------CEEE--------------EEEEEE
T ss_pred ccCchHHH---HHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCc------------cccC--------------CCCEEE
Confidence 2233332 456677666789999999999999777775310 0110 011233
Q ss_pred ccCCCCccceeeeecCcccccCCCCEEEEEeeecC-----CcccCCCcceeeeecccCCCCCceEEEEE--eCCEEEEEE
Q 024993 129 SQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVP-----SNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAF 201 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~-----~~~~~~~~~lA~s~~~~~~~~~~~~~~~~--~~~v~gvQf 201 (259)
|..++.. ..+||+.++++.+...||.+.+ ....+.++++|.|+.+ -.++++ .++++++||
T Consensus 179 v~~~~~~------~~~pL~~g~~~~f~vphsr~~e~~~~~v~~~pga~vLA~S~~~-------~~q~~~~~~~~~~~vQg 245 (312)
T 2h2w_A 179 VYKHRVA------KDSVLFRGHDDFFWAPHSRYTEVKKEDIDKVPELEILAESDEA-------GVYVVANKSERQIFVTG 245 (312)
T ss_dssp EEEEEES------SCCGGGTTCCSEEEEEEEEEEECCHHHHTTCC-CEEEEEETTT-------EEEEEECSSSSEEEECS
T ss_pred EEEEEEc------CCCccccCCCCceEeeEEeccccCHHHccCCCCCEEEEcCCCC-------cceEEEecCCCEEEEEC
Confidence 3332111 1467888887788888875421 1111124789998764 345554 458999999
Q ss_pred CccCCCchHHHHHHHHHH
Q 024993 202 HPELTADTRWHSYFLKMM 219 (259)
Q Consensus 202 HPE~~~~~~i~~nfl~~~ 219 (259)
|||++.+ .+.+.+.+.+
T Consensus 246 HPEyd~~-~l~~ey~rd~ 262 (312)
T 2h2w_A 246 HPEYDRY-TLRDEYYRDI 262 (312)
T ss_dssp CTTCCTT-HHHHHHHHHH
T ss_pred CCCCCHH-HHHHHHHHHH
Confidence 9999875 3333344433
No 35
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.66 E-value=1.6e-17 Score=159.08 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHhCCC----eEEEeCCC---------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 9 QGSFNEHIAALKRLGV----KGVEIRKP---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 9 ~G~~~~~~~~L~~~G~----~v~~~~~~---------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
.++|.++.++|+++|+ ++.+.... +.+.++|+||+|||+.+... . ...+.++.+++.++|+|
T Consensus 302 ~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~~--~---g~~~~i~~a~~~~~PiL 376 (545)
T 1s1m_A 302 PDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGV--E---GMITTARFARENNIPYL 376 (545)
T ss_dssp GGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTH--H---HHHHHHHHHHHTTCCEE
T ss_pred EEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCccc--h---hhHHHHHHHHHCCCcEE
Confidence 4578888889988775 44443321 23678999999999754311 1 23577888888899999
Q ss_pred EEchhHHHHHHhhcc
Q 024993 76 GTCAGLIFLANKAVG 90 (259)
Q Consensus 76 GIC~G~QlL~~~~~~ 90 (259)
|||+|||+|+.+++.
T Consensus 377 GIClG~Qll~va~Gg 391 (545)
T 1s1m_A 377 GICLGMQVALIDYAR 391 (545)
T ss_dssp EETHHHHHHHHHHHH
T ss_pred EECChHHHHHHHhCC
Confidence 999999999999874
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.45 E-value=8e-13 Score=137.20 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=65.4
Q ss_pred CEEEEEecCCChH--HHHHHHHhCCCeEEEeC------CCCCCCCcCEEEEcCCch--hHH--------HHHHhhCCHHH
Q 024993 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGES--TTM--------ARLAEYHNLFP 62 (259)
Q Consensus 1 mki~vl~~~G~~~--~~~~~L~~~G~~v~~~~------~~~~l~~~d~iil~GG~~--~~~--------~~l~~~~~~~~ 62 (259)
+||+||+++|... ++.++|++.|++++++. ..+.++++|+||+|||++ +.+ ..+. +..+.+
T Consensus 1048 pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~-~~~l~~ 1126 (1303)
T 3ugj_A 1048 PKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILF-NHRVRD 1126 (1303)
T ss_dssp CEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGGGCSEEEECCSCGGGGTTSTTHHHHHHHHT-SHHHHH
T ss_pred CEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccHhhCCEEEECCCCcchhhhccchhHHHHHHh-chhHHH
Confidence 5899999987654 78899999999988763 345788999999999853 211 1221 123456
Q ss_pred HHHHHH-HcCCcEEEEchhHHHHHHh
Q 024993 63 ALREFV-KMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 63 ~i~~~~-~~g~PiLGIC~G~QlL~~~ 87 (259)
.+++++ +.++|+||||.|+|+|++.
T Consensus 1127 ~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1127 EFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred HHHHHHHhCCCcEEEECHHHHHHHHh
Confidence 677765 5799999999999999986
No 37
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=99.32 E-value=8.9e-13 Score=113.58 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=83.0
Q ss_pred EEEEEecC-------CChHHHHHHHHhCCCeEEEeCCC----CCCCCcCEEEEcCCchh-HHHHHHhhCCHHHHHHHHHH
Q 024993 2 VVGVLALQ-------GSFNEHIAALKRLGVKGVEIRKP----DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 2 ki~vl~~~-------G~~~~~~~~L~~~G~~v~~~~~~----~~l~~~d~iil~GG~~~-~~~~l~~~~~~~~~i~~~~~ 69 (259)
||+||.+. ++..++.++|+++|++++.++.. +.+.++|+|++|||... .+..+++ .++.+.|+++++
T Consensus 33 ~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpGG~~~~~~~~l~~-~gl~~~l~~~~~ 111 (229)
T 1fy2_A 33 SAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRE-RGLLAPMADRVK 111 (229)
T ss_dssp EEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECCSCHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECCCcHHHHHHHHHH-CChHHHHHHHHH
Confidence 78999864 34556788999999998888532 35678999999999654 4556654 678899999999
Q ss_pred cCCcEEEEchhHHHHHHhhccc-c-----CCCcccccceeeeEEee
Q 024993 70 MGKPVWGTCAGLIFLANKAVGQ-K-----LGGQELVGGLDCTVHRN 109 (259)
Q Consensus 70 ~g~PiLGIC~G~QlL~~~~~~~-~-----~g~~~~lG~~~~~v~~~ 109 (259)
+|+|++|+|+|+|+|+..+... + .+..++||++++.+..+
T Consensus 112 ~G~p~~G~sAG~~~l~~~~~~~~d~~~~~~~~~~gLgli~~~v~~H 157 (229)
T 1fy2_A 112 RGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPH 157 (229)
T ss_dssp TTCEEEEETHHHHHTSSBSTTCCSCCCSCCSCSBCCCCSSSEEECS
T ss_pred cCCEEEEECHHHHhhcccceecCCCCcccCCcCCcCCCCCceecCC
Confidence 9999999999999999977432 0 13467899999887654
No 38
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=1.9e-11 Score=103.72 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=79.3
Q ss_pred EEEEEecC-C------ChHHHHHHHHhCCCeEEEeC----CC----CCCCCcCEEEEcCCch-hHHHHHHhhCCHHHHHH
Q 024993 2 VVGVLALQ-G------SFNEHIAALKRLGVKGVEIR----KP----DQLQNVSSLIIPGGES-TTMARLAEYHNLFPALR 65 (259)
Q Consensus 2 ki~vl~~~-G------~~~~~~~~L~~~G~~v~~~~----~~----~~l~~~d~iil~GG~~-~~~~~l~~~~~~~~~i~ 65 (259)
||++|.+. | +..++.++|+++|+++++++ ++ +.+.++|+|++|||.. ..+..+++ .++.+.|+
T Consensus 29 ~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~-~gl~~~l~ 107 (206)
T 3l4e_A 29 TVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKR-TGADKLIL 107 (206)
T ss_dssp EEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHH-HTHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHH-CChHHHHH
Confidence 68888742 2 23567899999999998874 33 2366899999999854 34566655 57899999
Q ss_pred HHHHcCCcEEEEchhHHHHHHhhccc----------cCCCcccccceeeeEE
Q 024993 66 EFVKMGKPVWGTCAGLIFLANKAVGQ----------KLGGQELVGGLDCTVH 107 (259)
Q Consensus 66 ~~~~~g~PiLGIC~G~QlL~~~~~~~----------~~g~~~~lG~~~~~v~ 107 (259)
+++++|+|++|||+|+|+|+..+... .....++||++|..+.
T Consensus 108 ~~~~~G~p~~G~sAGa~~l~~~i~~~~~~~~~~~~~~~~~~~GLGlv~~~i~ 159 (206)
T 3l4e_A 108 EEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTL 159 (206)
T ss_dssp HHHHTTCEEEEETHHHHTTSSBCGGGTTTSCGGGCSSCCCCBCCCCSSSEEE
T ss_pred HHHHcCCeEEEECHHHHHhcccceeccCCCCccccCCCCcCCcccCCCCEeE
Confidence 99999999999999999999866321 1224578888888765
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.87 E-value=7e-09 Score=86.50 Aligned_cols=85 Identities=26% Similarity=0.466 Sum_probs=64.5
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCCC----------------------CCCCcCEEEEcCCchhHHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD----------------------QLQNVSSLIIPGGESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~----------------------~l~~~d~iil~GG~~~~~~~l 54 (259)
|||+|+.++|. +....+.|++.|+++.+++... +..++|+||+|||... ..+
T Consensus 24 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~--~~l 101 (193)
T 1oi4_A 24 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSP--DYL 101 (193)
T ss_dssp CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHH--HHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCH--HHh
Confidence 58999988763 3346788999999998875321 1236899999999542 233
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 102 ~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 102 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 222346789999999999999999999999986
No 40
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.80 E-value=1.8e-08 Score=81.77 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=64.7
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC------------------CCC--CCcCEEEEcCCchhHHHHHHh
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~iil~GG~~~~~~~l~~ 56 (259)
|||+|+.++|- +....+.|+..|+++.+++.. +++ .++|+||+|||... ..+..
T Consensus 3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~ 80 (168)
T 3l18_A 3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP--EIVRL 80 (168)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH--HHHTT
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH--HHhcc
Confidence 89999988763 234568899999999887532 122 25999999999642 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 81 NEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 3346789999999999999999999999986
No 41
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=98.63 E-value=8.8e-08 Score=79.81 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=64.5
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC-------------------CCC---CCcCEEEEcCCchhHHHHHH
Q 024993 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL---QNVSSLIIPGGESTTMARLA 55 (259)
Q Consensus 2 ki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-------------------~~l---~~~d~iil~GG~~~~~~~l~ 55 (259)
||+|+.++|. +....+.|++.|+++.+++.. +++ .++|+||+|||.... ..+.
T Consensus 5 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~-~~l~ 83 (197)
T 2rk3_A 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA-QNLS 83 (197)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHH-HHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhH-HHhh
Confidence 7999988773 334668899999999887421 123 578999999996422 2233
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+..+.++|+++.+++++|.+||.|.++|+.+
T Consensus 84 ~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 84 ESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 33346799999999999999999999999986
No 42
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.59 E-value=6.7e-08 Score=79.81 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=55.1
Q ss_pred HHHHHHHhCCCeEEEeCCC------------------CC--CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 14 EHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~------------------~~--l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
...+.|++.|+++++++.. ++ ..+||+||+|||.... .+..+..+.++|+++.++++|
T Consensus 26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~--~l~~~~~~~~~l~~~~~~~k~ 103 (177)
T 4hcj_A 26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI--TLWDDWRTQGLAKLFLDNQKI 103 (177)
T ss_dssp HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG--GGTTCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH--HHhhCHHHHHHHHHHHHhCCE
Confidence 3568899999999887532 12 2479999999996432 232223467899999999999
Q ss_pred EEEEchhHHHHHHh
Q 024993 74 VWGTCAGLIFLANK 87 (259)
Q Consensus 74 iLGIC~G~QlL~~~ 87 (259)
+.+||.|.++|+.+
T Consensus 104 iaaIC~g~~~La~a 117 (177)
T 4hcj_A 104 VAGIGSGVVIMANA 117 (177)
T ss_dssp EEEETTHHHHHHHT
T ss_pred EEEecccHHHHHHC
Confidence 99999999999976
No 43
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=98.58 E-value=1.8e-07 Score=78.53 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=63.9
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCCC-----------------------CCCCcCEEEEcCCchhHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD-----------------------QLQNVSSLIIPGGESTTMAR 53 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~-----------------------~l~~~d~iil~GG~~~~~~~ 53 (259)
|||+|+.++|. +....+.|++.|+++.+++... +..++|+||+|||.... ..
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~-~~ 81 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGA-EC 81 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHH-HH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccH-HH
Confidence 38999988775 2345678999999998874311 12478999999996422 22
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEchhH-HHHHHh
Q 024993 54 LAEYHNLFPALREFVKMGKPVWGTCAGL-IFLANK 87 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~PiLGIC~G~-QlL~~~ 87 (259)
+..+..+.++|+++.++++||.+||.|. ++|+.+
T Consensus 82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 3333346789999999999999999999 998864
No 44
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=98.58 E-value=3.3e-07 Score=75.82 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=63.2
Q ss_pred EEEEEecCCC----hHHHHHHHHhCCCeEEEeCCCC-------------------CC--CCcCEEEEcCCchhHHHHHHh
Q 024993 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD-------------------QL--QNVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 2 ki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~-------------------~l--~~~d~iil~GG~~~~~~~l~~ 56 (259)
||+|+..+|- +....+.|++.|+++.+++... ++ .++|+||+|||.... ..+..
T Consensus 7 kv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~ 85 (190)
T 4e08_A 7 SALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGS-NAMGE 85 (190)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHH-HHHHH
T ss_pred EEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHH-HHhhh
Confidence 6999988763 2245688999999998874321 11 368999999995322 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+..+.++|+++.++++++.+||.|.++|+.+
T Consensus 86 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 86 SSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 3356799999999999999999999999975
No 45
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.56 E-value=1.7e-07 Score=77.41 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=62.5
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC-----------------------CCC--CCcCEEEEcCCchhHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-----------------------DQL--QNVSSLIIPGGESTTM 51 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~-----------------------~~l--~~~d~iil~GG~~~~~ 51 (259)
|||+|+.++|. +....+.|+..|+++.+++.. +++ .++|+||+|||....
T Consensus 10 ~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~- 88 (190)
T 2vrn_A 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP- 88 (190)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH-
Confidence 58999988774 234568899999988776421 122 368999999996322
Q ss_pred HHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 52 ~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 223222346789999999999999999999999986
No 46
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.54 E-value=3.9e-07 Score=75.30 Aligned_cols=84 Identities=26% Similarity=0.314 Sum_probs=64.6
Q ss_pred CEEEEEecCC----ChHHHHHHHHh-CCCeEEEeCCC------------------CCCC--CcCEEEEcCCchhHHHHHH
Q 024993 1 MVVGVLALQG----SFNEHIAALKR-LGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLA 55 (259)
Q Consensus 1 mki~vl~~~G----~~~~~~~~L~~-~G~~v~~~~~~------------------~~l~--~~d~iil~GG~~~~~~~l~ 55 (259)
|||+|+.++| .+....+.|++ .|+++.+++.. ++++ ++|+||+|||.... +.
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~---~~ 78 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE---KG 78 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH---HT
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc---cc
Confidence 3799998766 34456788888 89999887531 1223 79999999997432 22
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+..+.++|+++.+++++|.+||.|.++|+.+
T Consensus 79 ~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 79 TAADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 33567899999999999999999999999976
No 47
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.41 E-value=4.1e-07 Score=76.74 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=59.6
Q ss_pred EEEEEecCCC----hHHHHHHHHhC-------CCeEEEeCCC------------------CCCCCcCEEEEcCCchhHHH
Q 024993 2 VVGVLALQGS----FNEHIAALKRL-------GVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMA 52 (259)
Q Consensus 2 ki~vl~~~G~----~~~~~~~L~~~-------G~~v~~~~~~------------------~~l~~~d~iil~GG~~~~~~ 52 (259)
||+|+.++|- +....+.|+.. ++++.+++.. ++++++|.||+|||......
T Consensus 10 ~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~~~~~ 89 (209)
T 3er6_A 10 RVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNILIIGSIGDPLES 89 (209)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEEEECCCSCHHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEEEECCCCCchhh
Confidence 6999988763 22345666544 3677776431 13457999999998632211
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+..+..+.++|+++.++++++.+||.|..+|+.+
T Consensus 90 ~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 90 LDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp GGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 11122346789999999999999999999999986
No 48
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.35 E-value=7.3e-07 Score=72.67 Aligned_cols=86 Identities=23% Similarity=0.352 Sum_probs=59.0
Q ss_pred CEEEEEecC---C-C-hHHHHHHHHhCCCeEEEeCCC-------------------CCC----CCcCEEEEcCC--c-hh
Q 024993 1 MVVGVLALQ---G-S-FNEHIAALKRLGVKGVEIRKP-------------------DQL----QNVSSLIIPGG--E-ST 49 (259)
Q Consensus 1 mki~vl~~~---G-~-~~~~~~~L~~~G~~v~~~~~~-------------------~~l----~~~d~iil~GG--~-~~ 49 (259)
|||+|+.++ | . +.. .+.+.+.|+++.+++.. +++ .++|+||+||| . ..
T Consensus 3 ~~v~ill~~~~~g~~~~~~-~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~ 81 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQY-LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVF 81 (175)
T ss_dssp CEEEEEECSSBCHHHHHHH-HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGG
T ss_pred cEEEEEEecCcCCCccchh-hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccH
Confidence 589999876 4 1 333 33333788988876432 123 46899999999 5 32
Q ss_pred -HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 50 -~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+.+...+..+.++|+++.++++++.+||.|.++|+.+
T Consensus 82 ~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 82 QQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 11100012346789999999999999999999999976
No 49
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.33 E-value=1.6e-06 Score=73.20 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=61.4
Q ss_pred EEEEEecCC----ChHHHHHHHH--------hCCCeEEEeCCC------------------CCCC--CcCEEEEcCCchh
Q 024993 2 VVGVLALQG----SFNEHIAALK--------RLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGEST 49 (259)
Q Consensus 2 ki~vl~~~G----~~~~~~~~L~--------~~G~~v~~~~~~------------------~~l~--~~d~iil~GG~~~ 49 (259)
||+|+.++| .+....+.|+ +.++++.+++.. ++++ ++|.||+|||...
T Consensus 7 ~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~ 86 (212)
T 3efe_A 7 KAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTW 86 (212)
T ss_dssp CEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCT
T ss_pred EEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCcc
Confidence 499998876 3446678888 668888876431 1233 7999999998542
Q ss_pred HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 50 TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 50 ~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.. ..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 87 ~~---~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 87 SE---EIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TS---GGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred cc---ccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 21 112346789999999999999999999999976
No 50
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=98.33 E-value=1.1e-06 Score=74.01 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=63.1
Q ss_pred EEEEEecCCChH----HHHHHHHhCCCeEEEeCCC-------------------CCC--CCcCEEEEcCCchhHHHHHHh
Q 024993 2 VVGVLALQGSFN----EHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 2 ki~vl~~~G~~~----~~~~~L~~~G~~v~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~l~~ 56 (259)
||+|+.++|-.. ...+.|++.|+++.+++.. +++ .++|.||+|||.... ..+..
T Consensus 11 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~l~~ 89 (208)
T 3ot1_A 11 RILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGA-QAFAD 89 (208)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHH-HHHHT
T ss_pred eEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHH-HHHhh
Confidence 799998877432 4568899999998887432 122 368999999996422 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhH-HHHHHh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGL-IFLANK 87 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~-QlL~~~ 87 (259)
+..+.++|+++.+++++|.+||.|. .+|+.+
T Consensus 90 ~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 90 STALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred CHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 3456799999999999999999999 888864
No 51
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.33 E-value=1.7e-06 Score=74.82 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=62.4
Q ss_pred EEEEEec-----CCChH----HHHHHHHhCCCeEEEeCCC------------------------------------CCC-
Q 024993 2 VVGVLAL-----QGSFN----EHIAALKRLGVKGVEIRKP------------------------------------DQL- 35 (259)
Q Consensus 2 ki~vl~~-----~G~~~----~~~~~L~~~G~~v~~~~~~------------------------------------~~l- 35 (259)
||+|+-. +|... ...+.|++.|++++++++. +++
T Consensus 25 kV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~ 104 (242)
T 3l3b_A 25 NSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIR 104 (242)
T ss_dssp EEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCC
T ss_pred EEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCC
Confidence 7999975 55322 3568899999999886421 111
Q ss_pred -CCcCEEEEcCCchhH--HHH--------HHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 36 -QNVSSLIIPGGESTT--MAR--------LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 36 -~~~d~iil~GG~~~~--~~~--------l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+++|+||+|||.... +.. +..+..+.++|+++.++++|+.+||.|.++|+.+.
T Consensus 105 ~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 105 VEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp GGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred cccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 368999999996532 111 11123467899999999999999999999999874
No 52
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=98.32 E-value=9.5e-07 Score=74.62 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=61.8
Q ss_pred CEEEEEecCCCh----HHHHHHHHhC--CCeEEEeCCC------------------CCCCCcCEEEEcCCchhHHHHHHh
Q 024993 1 MVVGVLALQGSF----NEHIAALKRL--GVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 1 mki~vl~~~G~~----~~~~~~L~~~--G~~v~~~~~~------------------~~l~~~d~iil~GG~~~~~~~l~~ 56 (259)
|||+|+.++|-- ....+.|+.. ++++.+++.. ++.+.+|.||+|||.... .+..
T Consensus 5 ~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~~~~--~~~~ 82 (211)
T 3mgk_A 5 YRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGTR--EKVN 82 (211)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECCSTHHH--HHTT
T ss_pred eEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECCCcchh--hhcC
Confidence 589999887742 2456778776 4777776531 123458999999996422 2322
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 83 ~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 83 DDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp CHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 2346789999999999999999999999976
No 53
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.31 E-value=1.3e-06 Score=74.80 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=62.5
Q ss_pred CEEEEEecCCCh----HHHHHHHHh-CCCeEEEeCCC------------------CCCCCcCEEEEcCCchhHHHHHHhh
Q 024993 1 MVVGVLALQGSF----NEHIAALKR-LGVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLAEY 57 (259)
Q Consensus 1 mki~vl~~~G~~----~~~~~~L~~-~G~~v~~~~~~------------------~~l~~~d~iil~GG~~~~~~~l~~~ 57 (259)
|||+|+.++|-. ....+.|+. .++++.+++.. ++++++|.||+|||... ..+..+
T Consensus 6 ~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~--~~~~~~ 83 (231)
T 3noq_A 6 VQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGV--GALMED 83 (231)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTH--HHHTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCCh--hhhccC
Confidence 479999887742 245677877 68888776431 23457999999998542 123222
Q ss_pred CCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 58 ~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 84 ~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 84 PQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 346799999999999999999999999976
No 54
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.29 E-value=1.3e-06 Score=74.75 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=63.0
Q ss_pred CEEEEEec-----CCChH----HHHHHHHhCCCeEEEeCCC------------------------------------CCC
Q 024993 1 MVVGVLAL-----QGSFN----EHIAALKRLGVKGVEIRKP------------------------------------DQL 35 (259)
Q Consensus 1 mki~vl~~-----~G~~~----~~~~~L~~~G~~v~~~~~~------------------------------------~~l 35 (259)
|||+|+.+ +|... ...+.|++.|+++.+++.. +++
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~ 86 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA 86 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence 36999987 66422 3467899999999886421 111
Q ss_pred --CCcCEEEEcCCchhH--HHH-------HHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 36 --QNVSSLIIPGGESTT--MAR-------LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 36 --~~~d~iil~GG~~~~--~~~-------l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+++|+||+|||.... +.+ ++.+..+.++|+++.+++++|.+||.|.++|+.++
T Consensus 87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL 150 (232)
T 1vhq_A 87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF 150 (232)
T ss_dssp CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence 368999999996432 111 11123467899999999999999999999999885
No 55
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=98.26 E-value=2e-06 Score=72.40 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=60.6
Q ss_pred EEEEEecCCC----hHHHHHHHHhC-CCeEEEeCCC-----------------CCCC-CcCEEEEcCCchhHHHHHHhhC
Q 024993 2 VVGVLALQGS----FNEHIAALKRL-GVKGVEIRKP-----------------DQLQ-NVSSLIIPGGESTTMARLAEYH 58 (259)
Q Consensus 2 ki~vl~~~G~----~~~~~~~L~~~-G~~v~~~~~~-----------------~~l~-~~d~iil~GG~~~~~~~l~~~~ 58 (259)
||+|+.++|- +....+.|++. ++++.+++.. +++. ++|.||+|||..... .+.
T Consensus 5 kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~----~~~ 80 (206)
T 3f5d_A 5 KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSN----DNK 80 (206)
T ss_dssp EEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCC----CCH
T ss_pred EEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhh----cCH
Confidence 4999987662 33567888887 8888776431 1233 789999999853211 112
Q ss_pred CHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 59 NLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 59 ~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+.++|+++.++++++.+||.|.++|+.+
T Consensus 81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 81 KLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 46789999999999999999999999986
No 56
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.25 E-value=1.4e-06 Score=85.11 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=66.5
Q ss_pred CEEEEEecCCChH-----HHHHHHHhCCCeEEEeCCC---------CC--CCCcCEEEEcCCchhH------HHHHHhhC
Q 024993 1 MVVGVLALQGSFN-----EHIAALKRLGVKGVEIRKP---------DQ--LQNVSSLIIPGGESTT------MARLAEYH 58 (259)
Q Consensus 1 mki~vl~~~G~~~-----~~~~~L~~~G~~v~~~~~~---------~~--l~~~d~iil~GG~~~~------~~~l~~~~ 58 (259)
.|||||...|++. .+.++|++.|++++++... +. ...||+||+|||.... .+.|+.+.
T Consensus 538 rKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~ 617 (688)
T 3ej6_A 538 LRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAG 617 (688)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTT
T ss_pred CEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccCH
Confidence 4799998777444 4578999999999998542 11 1369999999995421 12344334
Q ss_pred CHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 59 NLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 59 ~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
...++|+++.+.+|||.+||.|.++|..+-
T Consensus 618 ~a~~fV~e~~~hgKpIAAIchgp~lL~~AG 647 (688)
T 3ej6_A 618 RPSQILTDGYRWGKPVAAVGSAKKALQSIG 647 (688)
T ss_dssp HHHHHHHHHHHTTCCEEEEGGGHHHHHHTT
T ss_pred HHHHHHHHHHHcCCEEEEeCccHHHHHHcC
Confidence 567899999999999999999999999874
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.25 E-value=3e-06 Score=77.89 Aligned_cols=85 Identities=26% Similarity=0.402 Sum_probs=64.1
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCCC----------------------------------C--CCCcCE
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD----------------------------------Q--LQNVSS 40 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~~----------------------------------~--l~~~d~ 40 (259)
+||+|+..+|. +....+.|++.|+++.+++... + ..++|+
T Consensus 13 ~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 92 (396)
T 3uk7_A 13 RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDG 92 (396)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred CeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCE
Confidence 37999987663 2345688999999998875320 1 136899
Q ss_pred EEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 41 iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
||+|||... ..+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 93 livpGG~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 93 LVIPGGRAP--EYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp EEECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred EEECCCcch--hhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 999999642 223333346789999999999999999999999986
No 58
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=98.24 E-value=1.7e-06 Score=73.25 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=62.0
Q ss_pred EEEEEec----------CCC----hHHHHHHHHhCCCeEEEeCCC-------------------------------CCC-
Q 024993 2 VVGVLAL----------QGS----FNEHIAALKRLGVKGVEIRKP-------------------------------DQL- 35 (259)
Q Consensus 2 ki~vl~~----------~G~----~~~~~~~L~~~G~~v~~~~~~-------------------------------~~l- 35 (259)
||+|+-. +|. +....+.|++.|+++.+++.. +++
T Consensus 7 kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 86 (224)
T 1u9c_A 7 RVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDD 86 (224)
T ss_dssp EEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGG
T ss_pred eEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcC
Confidence 7999977 553 234567899999999886421 011
Q ss_pred -CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 36 -QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 36 -~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.++|+||+|||.... ..+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus 87 ~~~~D~livpGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 87 AHGFDAIFLPGGHGTM-FDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp GSSCSEEEECCCTTHH-HHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhhCCEEEECCCcchH-HHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 368999999996532 112222346789999999999999999999999976
No 59
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=98.24 E-value=2.3e-06 Score=71.27 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=58.3
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCC---C------------------CCC-------CCcCEEEEcCCch
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK---P------------------DQL-------QNVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~---~------------------~~l-------~~~d~iil~GG~~ 48 (259)
|||+|+.++|- +....+.|++.|+++.++.. . +++ ++||+||+|||..
T Consensus 5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~ 84 (194)
T 4gdh_A 5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGL 84 (194)
T ss_dssp CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHH
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCch
Confidence 67999988774 33456789999988766431 0 011 2479999999964
Q ss_pred hHHHHHHhhCCHHHHHHHHHHc-CCcEEEEchhHHHHHH
Q 024993 49 TTMARLAEYHNLFPALREFVKM-GKPVWGTCAGLIFLAN 86 (259)
Q Consensus 49 ~~~~~l~~~~~~~~~i~~~~~~-g~PiLGIC~G~QlL~~ 86 (259)
.. ..+..+..+.++|+++.++ ++++.+||.|..++..
T Consensus 85 ~~-~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~~a 122 (194)
T 4gdh_A 85 GA-KTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAKT 122 (194)
T ss_dssp HH-HHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHHHH
T ss_pred hH-hHhhhCHHHHHHHHHhhhcCCceEEeecccccchhh
Confidence 32 3344434567889988754 7999999999865443
No 60
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.22 E-value=3.3e-06 Score=77.62 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=64.0
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC----------------------------------CC--CCCcCE
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP----------------------------------DQ--LQNVSS 40 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~----------------------------------~~--l~~~d~ 40 (259)
+||+|+..+|. +....+.|++.|+++.+++.. ++ ..++|.
T Consensus 206 ~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 285 (396)
T 3uk7_A 206 KRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDA 285 (396)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred ceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCE
Confidence 47999987763 334668899999999887431 01 136899
Q ss_pred EEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 41 iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
||+|||... ..+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 286 livpGg~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 286 LVIPGGRAP--EYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp EEECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred EEECCCcch--hhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 999999642 223333346789999999999999999999999986
No 61
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.18 E-value=1.6e-06 Score=85.34 Aligned_cols=85 Identities=25% Similarity=0.193 Sum_probs=63.9
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC------------------CCC--CCcCEEEEcCCchhHHHHHHh
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~iil~GG~~~~~~~l~~ 56 (259)
+||+||...|. +..+.++|++.|++++++... ++. ..||+||+||| .. +.++.
T Consensus 601 rKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~--~~Lr~ 677 (753)
T 3ttv_A 601 RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NI--ADIAD 677 (753)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CG--GGTTT
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-Ch--HHhhh
Confidence 48999987662 445678999999999887531 112 25899999999 21 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+..+.++|+++.++++||.+||.|.++|+.+-
T Consensus 678 d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AG 709 (753)
T 3ttv_A 678 NGDANYYLMEAYKHLKPIALAGDARKFKATIK 709 (753)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGT
T ss_pred CHHHHHHHHHHHhcCCeEEEECchHHHHHHcC
Confidence 23467899999999999999999999999874
No 62
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=98.13 E-value=7e-06 Score=71.34 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=61.6
Q ss_pred CEEEEEecCCC----hHHHHHHH-HhCCCeEEEeCCC------------------CCC-CCcCEEEEcCCc-hhHHHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAAL-KRLGVKGVEIRKP------------------DQL-QNVSSLIIPGGE-STTMARLA 55 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L-~~~G~~v~~~~~~------------------~~l-~~~d~iil~GG~-~~~~~~l~ 55 (259)
|||+|+.++|- +....+.| +..|+++.+++.. +++ ..||.||+|||. .. ..+.
T Consensus 24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g~--~~l~ 101 (253)
T 3ewn_A 24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDGT--LAAA 101 (253)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSHHH--HHHT
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccch--hhhc
Confidence 58999988773 22356778 4568888886431 122 246999999997 32 2232
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
.+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 102 ~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 102 SDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp TCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 32346799999999999999999999999976
No 63
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.08 E-value=4.5e-06 Score=69.92 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=59.0
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCC------CeEEEeCCC-----------------CC--CCCcCEEEEcCCchhHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLG------VKGVEIRKP-----------------DQ--LQNVSSLIIPGGESTTM 51 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G------~~v~~~~~~-----------------~~--l~~~d~iil~GG~~~~~ 51 (259)
+||+|+.++|- +....+.|+..+ +++.+++.. ++ ..++|.||+|||.....
T Consensus 6 ~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~~~ 85 (202)
T 3gra_A 6 YRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRTPL 85 (202)
T ss_dssp EEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTCCS
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCchhh
Confidence 36999988773 223456666543 677665421 12 35799999999854221
Q ss_pred HHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 52 ~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
. . ..+.++|+++.++++++.+||.|..+|+.+
T Consensus 86 ~---~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 86 K---Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp C---C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred c---c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 1 1 357899999999999999999999999986
No 64
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.07 E-value=1.3e-05 Score=73.20 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=63.1
Q ss_pred CEEEEEecCCC----hHHHHHHHHhCCCeEEEeCCC--------------------CCCC--CcCEEEEcCCchhHHHHH
Q 024993 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP--------------------DQLQ--NVSSLIIPGGESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G~----~~~~~~~L~~~G~~v~~~~~~--------------------~~l~--~~d~iil~GG~~~~~~~l 54 (259)
+||+|+.++|- +....+.|+..|+++.+++.. ++++ ++|.||+|||... ..+
T Consensus 11 kkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~--~~l 88 (365)
T 3fse_A 11 KKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAP--DKM 88 (365)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHH--HHH
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcch--hhc
Confidence 36999988763 234568899999988876421 1122 5899999999642 233
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 89 ~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 89 RRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp TTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 333346799999999999999999999999976
No 65
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=98.06 E-value=1.1e-05 Score=79.56 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=64.9
Q ss_pred CEEEEEecCCCh----HHHHHHHHhCCCeEEEeCCC------------------CCC--CCcCEEEEcCCchhHHHHHHh
Q 024993 1 MVVGVLALQGSF----NEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (259)
Q Consensus 1 mki~vl~~~G~~----~~~~~~L~~~G~~v~~~~~~------------------~~l--~~~d~iil~GG~~~~~~~l~~ 56 (259)
|||+||..+|.. ....++|+..|+++++++.. +++ .++|+||+|||.... ..+..
T Consensus 535 rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~-~~l~~ 613 (715)
T 1sy7_A 535 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAA-ETLSK 613 (715)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHH-HHHHT
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccH-hhhcc
Confidence 589999887742 24568899999999887531 112 358999999995322 22333
Q ss_pred hCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+..+.++|+++.+++++|.+||.|..+|+.++
T Consensus 614 ~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~Al 645 (715)
T 1sy7_A 614 NGRALHWIREAFGHLKAIGATGEAVDLVAKAI 645 (715)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECHHHHHHHHcc
Confidence 23467899999999999999999999999884
No 66
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.05 E-value=6e-06 Score=71.08 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=39.8
Q ss_pred CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 37 ~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
++|+||+|||.... ..+..+..+.++|+++.++++||.+||.|..+|+.+-
T Consensus 98 ~~D~livpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag 148 (243)
T 1rw7_A 98 DYQIFFASAGHGTL-FDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLT 148 (243)
T ss_dssp GEEEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred hCcEEEECCCCCch-hhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcC
Confidence 68999999996432 1222223467899999999999999999999998763
No 67
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=98.01 E-value=9.4e-06 Score=70.33 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=40.0
Q ss_pred CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 37 ~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+||+||+|||... +..+..+..+.++|+++.++++||.+||.|..+|+.+
T Consensus 105 ~yD~l~ipGG~g~-~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 105 DYGLMFVCGGHGA-LYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GCSEEEECCSTTH-HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hCCEEEEeCCCch-hhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 6899999999643 1233333456789999999999999999999999876
No 68
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=98.00 E-value=1e-05 Score=69.95 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=40.0
Q ss_pred CcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 37 ~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
+||+||+|||.... ..+..+..+.++|+++.++++||.+||.|..+|+.+
T Consensus 98 ~yD~l~vpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 98 DYKVFFASAGHGAL-FDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEEcCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 68999999996432 223333456789999999999999999999999876
No 69
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.00 E-value=5.5e-06 Score=81.02 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=64.1
Q ss_pred CEEEEEec--CCC----hHHHHHHHHhCCCeEEEeCCC---------CC--CCCcCEEEEcCCchh--------------
Q 024993 1 MVVGVLAL--QGS----FNEHIAALKRLGVKGVEIRKP---------DQ--LQNVSSLIIPGGEST-------------- 49 (259)
Q Consensus 1 mki~vl~~--~G~----~~~~~~~L~~~G~~v~~~~~~---------~~--l~~~d~iil~GG~~~-------------- 49 (259)
+||+||.. .|. +..+.++|++.|++++++... ++ ..+||+||+|||...
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~ 609 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAG 609 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTT
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccc
Confidence 48999976 331 335678999999999998542 11 237999999999532
Q ss_pred -HHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHh
Q 024993 50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (259)
Q Consensus 50 -~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~ 87 (259)
..+.|.......++|+++.+.||||.+||.|.++|..+
T Consensus 610 ~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 610 SGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp SCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 01234333456789999999999999999999999876
No 70
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=97.75 E-value=3.2e-05 Score=68.45 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=39.5
Q ss_pred CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 36 ~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
+++|+||+|||.... ..+..+..+.++|+++.+++++|.+||.|..+|+.+.
T Consensus 144 ~~yD~livPGG~g~~-~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGAL-IGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGG-SSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchh-hhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 578999999995422 1122223467899999999999999999999888763
No 71
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=97.56 E-value=4.6e-05 Score=65.49 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=54.6
Q ss_pred CEEEEEecCCCh----HHHHHHHHhCC--CeEEEeCCC-----------------CCCCCcCEEEEcCC-chhHHHHHHh
Q 024993 1 MVVGVLALQGSF----NEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLIIPGG-ESTTMARLAE 56 (259)
Q Consensus 1 mki~vl~~~G~~----~~~~~~L~~~G--~~v~~~~~~-----------------~~l~~~d~iil~GG-~~~~~~~l~~ 56 (259)
|||+|+.++|-. ....+.|+..+ +++.+++.. ++..++|.||+||| .... .+..
T Consensus 21 ~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~~--~l~~ 98 (236)
T 3bhn_A 21 YKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGIP--AALQ 98 (236)
T ss_dssp EEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEESSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHHH--HHHT
T ss_pred CEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEECCCcEEecCCcEEecCcccccccCCCEEEEcCCccCHh--hhcc
Confidence 469999887732 23557777655 577665410 12347899999999 4322 2322
Q ss_pred hCCHHHHHHHHHHcCC-cEEEEchhHHHHHHh
Q 024993 57 YHNLFPALREFVKMGK-PVWGTCAGLIFLANK 87 (259)
Q Consensus 57 ~~~~~~~i~~~~~~g~-PiLGIC~G~QlL~~~ 87 (259)
+..+.++| +.++++ +|.+||.|..+|+.+
T Consensus 99 ~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 99 DENFMSAL--KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp CHHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred CHHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence 23355677 345566 999999999999986
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=97.45 E-value=9.2e-05 Score=65.60 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=62.8
Q ss_pred EEEEEecC-CCh----HHHHHHHHhCCC-eEEEeCCC-----C------CCCCcCEEEEcCCchhH-HHHHHhhCCHHHH
Q 024993 2 VVGVLALQ-GSF----NEHIAALKRLGV-KGVEIRKP-----D------QLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~~~-G~~----~~~~~~L~~~G~-~v~~~~~~-----~------~l~~~d~iil~GG~~~~-~~~l~~~~~~~~~ 63 (259)
||++|-.. ++. ..+.++|+++|+ ++.++... + .+.++|+|+++||.... ...+. ...+.+.
T Consensus 58 ~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~-~t~l~~~ 136 (291)
T 3en0_A 58 IIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLA-DTPLMDR 136 (291)
T ss_dssp EEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHT-TCHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHH-hCCHHHH
Confidence 67888543 332 235678888999 67766431 1 24579999999997543 34443 3678899
Q ss_pred HHHHHHcC-CcEEEEchhHHHHHHhh
Q 024993 64 LREFVKMG-KPVWGTCAGLIFLANKA 88 (259)
Q Consensus 64 i~~~~~~g-~PiLGIC~G~QlL~~~~ 88 (259)
|++++++| .|+.|.|+|+.+|+..+
T Consensus 137 L~~~~~~G~~~~~GtSAGA~i~~~~m 162 (291)
T 3en0_A 137 IRQRVHNGEISLAGTSAGAAVMGHHM 162 (291)
T ss_dssp HHHHHHTTSSEEEEETHHHHTTSSEE
T ss_pred HHHHHHCCCeEEEEeCHHHHhhhHhe
Confidence 99999999 99999999999998764
No 73
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=95.87 E-value=0.024 Score=48.84 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=49.5
Q ss_pred ecCCChHHHHHHHHhCCCeEEEeC-------CC---CCCCCcCEEEEcCCchhHHH----HHHh---hCCHHHHHHHHHH
Q 024993 7 ALQGSFNEHIAALKRLGVKGVEIR-------KP---DQLQNVSSLIIPGGESTTMA----RLAE---YHNLFPALREFVK 69 (259)
Q Consensus 7 ~~~G~~~~~~~~L~~~G~~v~~~~-------~~---~~l~~~d~iil~GG~~~~~~----~l~~---~~~~~~~i~~~~~ 69 (259)
..++....+.++|+..+++++++. .+ +.|++||.||+.+-...... .... .....+.|+++++
T Consensus 37 ~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~ 116 (256)
T 2gk3_A 37 KYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK 116 (256)
T ss_dssp EEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH
Confidence 344566678899999999999983 22 23578999999884322111 0000 0245789999999
Q ss_pred cCCcEEEEc
Q 024993 70 MGKPVWGTC 78 (259)
Q Consensus 70 ~g~PiLGIC 78 (259)
+|..+++|.
T Consensus 117 ~GGgll~ig 125 (256)
T 2gk3_A 117 NGGGLLMIG 125 (256)
T ss_dssp TTCEEEEEC
T ss_pred hCCEEEEEC
Confidence 999999993
No 74
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=94.30 E-value=0.053 Score=47.46 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=49.2
Q ss_pred CEEEEEecCCC-hHHHHHHHHhCCCeEEEeCCC-CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 1 mki~vl~~~G~-~~~~~~~L~~~G~~v~~~~~~-~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
|||+|+...+. ...+.++|++.|+++.+.... +.+.++|.+|.-||..+.+.. .+.+.+. +|++||=
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~a----------a~~~~~~-~PilGIN 98 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRI----------LQKLKRC-PPIFGIN 98 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHH----------HTTCSSC-CCEEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHH----------HHHhCCC-CcEEEEC
Confidence 89999976544 566788999999998875432 344678999999986544322 2222234 9999998
Q ss_pred hhH
Q 024993 79 AGL 81 (259)
Q Consensus 79 ~G~ 81 (259)
.|.
T Consensus 99 ~G~ 101 (278)
T 1z0s_A 99 TGR 101 (278)
T ss_dssp CSS
T ss_pred CCC
Confidence 773
No 75
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=91.13 E-value=0.34 Score=41.81 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=42.1
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHc--CCc
Q 024993 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM--GKP 73 (259)
Q Consensus 1 mki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~--g~P 73 (259)
||++|+.++.. ...+.++|++.|+++. ..++|.||.-||..+... .++.+... ++|
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------~~~~D~vv~lGGDGT~l~----------aa~~~~~~~~~~P 63 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------DVEPEIVISIGGDGTFLS----------AFHQYEERLDEIA 63 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------SSSCSEEEEEESHHHHHH----------HHHHTGGGTTTCE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------CCCCCEEEEEcCcHHHHH----------HHHHHhhcCCCCC
Confidence 99999977421 1134566788888771 246899999998655432 22333333 899
Q ss_pred EEEEchhH
Q 024993 74 VWGTCAGL 81 (259)
Q Consensus 74 iLGIC~G~ 81 (259)
+|||=.|.
T Consensus 64 ilGIn~G~ 71 (272)
T 2i2c_A 64 FIGIHTGH 71 (272)
T ss_dssp EEEEESSS
T ss_pred EEEEeCCC
Confidence 99997664
No 76
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=89.84 E-value=1.8 Score=37.52 Aligned_cols=74 Identities=12% Similarity=0.032 Sum_probs=47.2
Q ss_pred EEEEEecCC--ChH----HHHHHHHhCC-CeEEEeCCC----------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHH
Q 024993 2 VVGVLALQG--SFN----EHIAALKRLG-VKGVEIRKP----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (259)
Q Consensus 2 ki~vl~~~G--~~~----~~~~~L~~~G-~~v~~~~~~----------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i 64 (259)
||+|+.-.. ++. .+.+.|++.| ++|++..++ +.|+++|+||+.-.... ... ...+.|
T Consensus 6 kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~-l~~-----~~~~~l 79 (281)
T 4e5v_A 6 KTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDS-WPE-----ETNRRF 79 (281)
T ss_dssp EEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSC-CCH-----HHHHHH
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCc-CCH-----HHHHHH
Confidence 678884211 133 3456777788 888887542 35789999997332111 110 124667
Q ss_pred HHHHHcCCcEEEEchhH
Q 024993 65 REFVKMGKPVWGTCAGL 81 (259)
Q Consensus 65 ~~~~~~g~PiLGIC~G~ 81 (259)
++++++|++++++..+.
T Consensus 80 ~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 80 LEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp HHHHHTTCEEEEEGGGG
T ss_pred HHHHHcCCCEEEEeccc
Confidence 88889999999998754
No 77
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=88.58 E-value=1.1 Score=38.62 Aligned_cols=73 Identities=14% Similarity=-0.016 Sum_probs=46.2
Q ss_pred CE-EEEEecC---CChHHHHHHHHhCCCeEEEeCCC------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHc
Q 024993 1 MV-VGVLALQ---GSFNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (259)
Q Consensus 1 mk-i~vl~~~---G~~~~~~~~L~~~G~~v~~~~~~------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~ 70 (259)
|| |+|+.-. ..-..+.++|+..|++|++++.. ++|.+||.||++--....+.. ...+.|++++++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~-----~~~~~L~~yV~~ 78 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTA-----QAIDQLVTMVKA 78 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCH-----HHHHHHHHHHHT
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCH-----HHHHHHHHHHHh
Confidence 55 7788411 12234667899999999998653 235699999997522111111 125778899988
Q ss_pred CCcEEEEc
Q 024993 71 GKPVWGTC 78 (259)
Q Consensus 71 g~PiLGIC 78 (259)
|.-++.+.
T Consensus 79 GGgLi~~g 86 (259)
T 3rht_A 79 GCGLVMLG 86 (259)
T ss_dssp TCEEEEEC
T ss_pred CCeEEEec
Confidence 88777763
No 78
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=88.11 E-value=1.4 Score=38.52 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=43.2
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEeCCC-C---------------------------CCCCcCEEEEcCCc
Q 024993 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-D---------------------------QLQNVSSLIIPGGE 47 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~-~---------------------------~l~~~d~iil~GG~ 47 (259)
||+|+.++.+ ...+.++|++.|+++.+.... + ...++|.||.-||.
T Consensus 6 ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GGD 85 (307)
T 1u0t_A 6 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGD 85 (307)
T ss_dssp EEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeCC
Confidence 6999887653 335678889999988764210 0 11357999998886
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 48 STTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 48 ~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
.+... .++.+...++|+|||=.|
T Consensus 86 GT~l~----------a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 86 GTFLR----------AAELARNASIPVLGVNLG 108 (307)
T ss_dssp HHHHH----------HHHHHHHHTCCEEEEECS
T ss_pred HHHHH----------HHHHhccCCCCEEEEeCC
Confidence 55432 223333458999999766
No 79
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=83.48 E-value=0.73 Score=39.88 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=44.2
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEeCCC---------C-----CC-CCcCEEEEcCCchhHHHHHHhhCCH
Q 024993 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP---------D-----QL-QNVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~~~G~~v~~~~~~---------~-----~l-~~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
||+|+.++++ ...+.++|++.|+++.+.... . .+ .++|.||.-||..+..
T Consensus 7 ki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l--------- 77 (292)
T 2an1_A 7 CIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNML--------- 77 (292)
T ss_dssp EEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHH---------
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHH---------
Confidence 5899876542 335678899999998775310 0 01 2579999999966543
Q ss_pred HHHHHHHHHcCCcEEEEchhH
Q 024993 61 FPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+.++.+.+.+.|+|||=.|.
T Consensus 78 -~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 78 -GAARTLARYDINVIGINRGN 97 (292)
T ss_dssp -HHHHHHTTSSCEEEEBCSSS
T ss_pred -HHHHHhhcCCCCEEEEECCC
Confidence 23334444579999996553
No 80
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=81.43 E-value=1.9 Score=42.00 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=46.0
Q ss_pred HHHHHHhCCCeEEEeCCC-----CCCCCcCEEEEcCCch----hHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGES----TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~-----~~l~~~d~iil~GG~~----~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.++|..++++|+.++.. +.++++|.||.+|-.. ...-+.. ....+.||+++.+|.-++||+
T Consensus 473 ilEALsg~~~dV~FIsfdDI~e~e~L~d~DVIIn~G~A~TalSgg~~W~~--p~~~~aLR~fV~~GGgLIgVG 543 (759)
T 2zuv_A 473 ILESLSGMRVNVRFISFDDVLAHGIDSDIDVIINGGPVDTAFTGGDVWTN--PKLVETVRAWVRGGGAFVGVG 543 (759)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHHCCCTTCCEEEEEECTTSTTTCGGGGGC--HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhcCCCceEEecHHHhccccccccCCEEEecCcchhcccCccccCC--HHHHHHHHHHHHcCCcEEEeC
Confidence 678999999999998642 4578999999999321 1111111 235789999999999999987
No 81
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=79.90 E-value=4.9 Score=39.11 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
...++|.++|+.+.+++..+++++|+.||+|.-.... ..+.+.|++++++|.-++..+
T Consensus 429 ~~y~aL~~~gi~vD~v~~~~dL~~Yklvv~P~~~~~~-------~~~~~~L~~yV~~GG~lv~t~ 486 (675)
T 3tty_A 429 KYYDALYKQNIQTDMISVEEDLSKYKVVIAPVMYMVK-------PGFAERVERFVAQGGTFVTTF 486 (675)
T ss_dssp HHHHHHHTTTCCEEEECTTSCCTTCSEEEETTCCBCC-------TTHHHHHHHHHHTTCEEEEET
T ss_pred HHHHHHHHcCceEEEecCcCCcccCCEEEEeccEecC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 4567899999999999988899999999999853211 234577889999888777655
No 82
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=78.57 E-value=4.3 Score=30.22 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=37.4
Q ss_pred hHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCchh-HHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 12 FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 12 ~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~~~-~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+..+...|...|+++.- +.+..+|.+|+.-|..+ ..++. ...|+.+.+.|+|++||=
T Consensus 17 ~~~L~~~l~~~~f~~~~----~~I~~~~~vIvL~G~~t~~s~wv------~~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 17 YRVFLERLEQSGLEWRP----ATPEDADAVIVLAGLWGTRRDEI------LGAVDLARKSSKPIITVR 74 (111)
T ss_dssp HHHHHHHHHHHCSCEEE----CCSSSCSEEEEEGGGTTTSHHHH------HHHHHHHTTTTCCEEEEC
T ss_pred HHHHHHHHhCCCCeeec----CccccCCEEEEEeCCCcCCChHH------HHHHHHHHHcCCCEEEEE
Confidence 33445555555776665 67889999887666443 23343 345677778899999983
No 83
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=74.00 E-value=11 Score=32.74 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=23.6
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~ 30 (259)
|||.|+-..|.-.+ +.+.|.+.|++|...+
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEc
Confidence 57889988777665 6788889999888763
No 84
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=73.89 E-value=1.9 Score=34.79 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=45.1
Q ss_pred CEEEEEecC-----CC-----hHHHHHHHHhCCCeEEEe---CCC-CC--------CCCcCEEEEcCCchhHHHHHHhhC
Q 024993 1 MVVGVLALQ-----GS-----FNEHIAALKRLGVKGVEI---RKP-DQ--------LQNVSSLIIPGGESTTMARLAEYH 58 (259)
Q Consensus 1 mki~vl~~~-----G~-----~~~~~~~L~~~G~~v~~~---~~~-~~--------l~~~d~iil~GG~~~~~~~l~~~~ 58 (259)
||++||... |. -..+.++|++.|+++..+ .+. +. ++++|.||.+||.+...++
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D----- 78 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDD----- 78 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTC-----
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCccc-----
Confidence 789999853 21 223567889999987653 332 11 2368999999985422111
Q ss_pred CHHHHHHHHHHcCCcEEEEchhHHHHHHhh
Q 024993 59 NLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (259)
Q Consensus 59 ~~~~~i~~~~~~g~PiLGIC~G~QlL~~~~ 88 (259)
-..+.+.++. ++++..----.+.|-..+
T Consensus 79 ~T~ea~a~~~--~~~l~~~~e~~~~i~~~~ 106 (172)
T 3kbq_A 79 MTVEGFAKCI--GQDLRIDEDALAMIKKKY 106 (172)
T ss_dssp CHHHHHHHHH--TCCCEECHHHHHHHHHHH
T ss_pred chHHHHHHHc--CCCeeeCHHHHHHHHHHH
Confidence 1234444443 455444444444444444
No 85
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=71.11 E-value=5.4 Score=33.88 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=40.6
Q ss_pred HHHHHhCCCeEEEeC--CCC------CCCCcCEEEEcCC-chhHHHHHHhhCCHHHHHHHHHHcCCcEEEEchh
Q 024993 16 IAALKRLGVKGVEIR--KPD------QLQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 16 ~~~L~~~G~~v~~~~--~~~------~l~~~d~iil~GG-~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G 80 (259)
.+.|+..|++|++.+ +++ .|+++|.||+-|. ....+.. ...+.|++++++|+.++||=.|
T Consensus 38 ~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~~-----~~~~al~~~V~~GgG~vgiH~a 106 (252)
T 1t0b_A 38 ASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKD-----EVVERVHRRVLEGMGLIVLHSG 106 (252)
T ss_dssp HHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCH-----HHHHHHHHHHHTTCEEEEEGGG
T ss_pred HHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCCH-----HHHHHHHHHHHcCCCEEEEccc
Confidence 567888999998865 321 2579999999542 1111111 1246788999999999999665
No 86
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=69.98 E-value=13 Score=34.40 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=47.2
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCC---------------------CCCCCcCEEEEcCCchh---HHHHHHh
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGEST---TMARLAE 56 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~---------------------~~l~~~d~iil~GG~~~---~~~~l~~ 56 (259)
||.|+-..|+-.+ +.+.|.+.|++|...+.. +.+.++|.||++-|.+. .....++
T Consensus 24 ~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a~~ 103 (494)
T 4hv4_A 24 HIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAARE 103 (494)
T ss_dssp EEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHHHH
T ss_pred EEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 6888888787775 788999999998886421 12457899998665322 1111111
Q ss_pred -hC---CHHHHHHHHHHcCCcEEEEch
Q 024993 57 -YH---NLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 57 -~~---~~~~~i~~~~~~g~PiLGIC~ 79 (259)
.. .-.+++.++. +.+|++||..
T Consensus 104 ~gi~v~~~~e~l~~~~-~~~~~IaVTG 129 (494)
T 4hv4_A 104 ARIPVIRRAEMLAELM-RYRHGIAVAG 129 (494)
T ss_dssp TTCCEEEHHHHHHHHH-TTSEEEEEEC
T ss_pred CCCCEEcHHHHHHHHh-cCCCEEEEec
Confidence 00 1134444433 4578888884
No 87
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=67.91 E-value=2.8 Score=35.62 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=38.1
Q ss_pred CEEEEEecCCChH---HHHHHHHhC--CCeEEEeCCCCCC-CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcE
Q 024993 1 MVVGVLALQGSFN---EHIAALKRL--GVKGVEIRKPDQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~--G~~v~~~~~~~~l-~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
||++|+.++..-. .+.+.+.+. |+++.. .+ +.. .++|.||..||..+... .++.+.. ++|+
T Consensus 1 mki~ii~Np~~~~~~~~~~~~i~~~l~~~~~~~-~~-~~~~~~~D~vv~~GGDGTll~----------~a~~~~~-~~Pi 67 (258)
T 1yt5_A 1 MKIAILYREEREKEGEFLKEKISKEHEVIEFGE-AN-APGRVTADLIVVVGGDGTVLK----------AAKKAAD-GTPM 67 (258)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHTTTSEEEEEEE-SS-SCSCBCCSEEEEEECHHHHHH----------HHTTBCT-TCEE
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHhcCCceec-cc-ccccCCCCEEEEEeCcHHHHH----------HHHHhCC-CCCE
Confidence 9999997543322 222223222 444432 21 222 47899999998665432 2233334 7899
Q ss_pred EEEchhH
Q 024993 75 WGTCAGL 81 (259)
Q Consensus 75 LGIC~G~ 81 (259)
+||=.|.
T Consensus 68 lGIn~G~ 74 (258)
T 1yt5_A 68 VGFKAGR 74 (258)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 9997663
No 88
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=62.71 E-value=21 Score=25.63 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=41.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHc-CC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM-GK 72 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~-g~ 72 (259)
++|+|++..-... .+.+.|+..|+++....+.++ + ..+|.+|+++... .+ +.+.|++. . ..
T Consensus 19 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~~~~g--~~-------~~~~l~~~--~~~~ 87 (137)
T 2pln_A 19 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNA--LS-------FVSRIKEK--HSSI 87 (137)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEECSTTH--HH-------HHHHHHHH--STTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEcCccH--HH-------HHHHHHhc--CCCc
Confidence 5788886433333 355778889998887765432 1 3689988443211 11 23445554 5 78
Q ss_pred cEEEEchh
Q 024993 73 PVWGTCAG 80 (259)
Q Consensus 73 PiLGIC~G 80 (259)
|++.++.-
T Consensus 88 ~ii~ls~~ 95 (137)
T 2pln_A 88 VVLVSSDN 95 (137)
T ss_dssp EEEEEESS
T ss_pred cEEEEeCC
Confidence 98888743
No 89
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=61.68 E-value=21 Score=31.17 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=48.8
Q ss_pred EEEEEecCCC--------hHHHHHHHHhCCCeEEEeCC--CC---------CCCCcCEEEEcCCchhHHHHHHhhCCHHH
Q 024993 2 VVGVLALQGS--------FNEHIAALKRLGVKGVEIRK--PD---------QLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (259)
Q Consensus 2 ki~vl~~~G~--------~~~~~~~L~~~G~~v~~~~~--~~---------~l~~~d~iil~GG~~~~~~~l~~~~~~~~ 62 (259)
|++|+.++.+ +..+.++|++.|+++.+... +. ....+|.||..||..+..+.
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v--------- 96 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEV--------- 96 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHH---------
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHH---------
Confidence 4888877532 23566788889988877532 11 12468999999986554322
Q ss_pred HHHHH--HHcCCcEEEEchhHH-HHHHhhc
Q 024993 63 ALREF--VKMGKPVWGTCAGLI-FLANKAV 89 (259)
Q Consensus 63 ~i~~~--~~~g~PiLGIC~G~Q-lL~~~~~ 89 (259)
++.. .+.+.|+..|=+|-- .|++.++
T Consensus 97 -~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 97 -VNGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp -HHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred -HHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 2222 235788888877655 5677664
No 90
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=61.46 E-value=27 Score=31.33 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=44.9
Q ss_pred EEEEEecCCC------hHHHHHHHHhCCCeEEEeC--------------------------CCCCC-CCcCEEEEcCCch
Q 024993 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIR--------------------------KPDQL-QNVSSLIIPGGES 48 (259)
Q Consensus 2 ki~vl~~~G~------~~~~~~~L~~~G~~v~~~~--------------------------~~~~l-~~~d~iil~GG~~ 48 (259)
+|+|+.-.++ ..++.++|.+.|++|.+-. ..+++ .++|.+|.-||..
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lGGDG 119 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDG 119 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEESSTT
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEEEcChH
Confidence 4777764443 3467789999998886521 01123 4789999999866
Q ss_pred hHHHHHHhhCCHHHHHHHHHHcCCcEEEEchhH
Q 024993 49 TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (259)
Q Consensus 49 ~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~G~ 81 (259)
+.+. ..+.+...+.|+|||=.|.
T Consensus 120 T~L~----------aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 120 TLLY----------ASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp HHHH----------HHHHCSSSCCCEEEEESSS
T ss_pred HHHH----------HHHHhccCCCCEEEEcCCC
Confidence 5432 2233334579999998873
No 91
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=60.86 E-value=8 Score=32.72 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=30.7
Q ss_pred CEEEEEecCCChH-----------HHHHHHHhCCCeEEEeCCC--------C--CCCCcCEEEEc
Q 024993 1 MVVGVLALQGSFN-----------EHIAALKRLGVKGVEIRKP--------D--QLQNVSSLIIP 44 (259)
Q Consensus 1 mki~vl~~~G~~~-----------~~~~~L~~~G~~v~~~~~~--------~--~l~~~d~iil~ 44 (259)
|||||++...|.. .+.+.|.++|.+|.+++-. + +...||.+++-
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vv 65 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVV 65 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEE
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEE
Confidence 9999998754421 2457889999999987632 2 33578887763
No 92
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=59.89 E-value=20 Score=26.69 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=28.5
Q ss_pred CEEEEEecC--CChHHH----HHHHHhCCCeEEEeCC----CCCCCC-cCEEEEc
Q 024993 1 MVVGVLALQ--GSFNEH----IAALKRLGVKGVEIRK----PDQLQN-VSSLIIP 44 (259)
Q Consensus 1 mki~vl~~~--G~~~~~----~~~L~~~G~~v~~~~~----~~~l~~-~d~iil~ 44 (259)
|||+|+-.. |+=..+ .+.|+..|++++++.. .+++.+ +|.||+.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~ 55 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLG 55 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEE
Confidence 999998642 432233 3445566888877642 245778 9999884
No 93
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=59.45 E-value=13 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=28.5
Q ss_pred CEEEEEecC--CChHH----HHHHHHhCCCeEEEeCCCC--------CCCCcCEEEEcC
Q 024993 1 MVVGVLALQ--GSFNE----HIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~--G~~~~----~~~~L~~~G~~v~~~~~~~--------~l~~~d~iil~G 45 (259)
|||+|+-.. ||=.. +.+.|...|+++.+++..+ ++.++|+||+.-
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEEC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEc
Confidence 999999653 44333 3455677798888775432 123689998854
No 94
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=59.17 E-value=19 Score=32.89 Aligned_cols=29 Identities=28% Similarity=0.107 Sum_probs=24.0
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~ 30 (259)
||+|+-..++-.+..+.|.+.|++|...+
T Consensus 11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D 39 (451)
T 3lk7_A 11 KVLVLGLARSGEAAARLLAKLGAIVTVND 39 (451)
T ss_dssp EEEEECCTTTHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeeCHHHHHHHHHHHhCCCEEEEEe
Confidence 68999887777788888999999888764
No 95
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=58.70 E-value=50 Score=26.44 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=45.6
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCC-CCCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRK-PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~-~~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
|||+|+- .|+... +.+.|.+.|.++.++.. ++.+.++|.||+.=. +..... +.+.+...++ +..++-++
T Consensus 20 ~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~aD~vi~av~-~~~~~~------v~~~l~~~~~-~~~vi~~~ 90 (209)
T 2raf_A 20 MEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVP-YPALAA------LAKQYATQLK-GKIVVDIT 90 (209)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCCCSSCCSEEEECSC-HHHHHH------HHHHTHHHHT-TSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHhccCCEEEEcCC-cHHHHH------HHHHHHHhcC-CCEEEEEC
Confidence 7899996 477765 55788889999888753 335678999988554 222222 2233444455 66666555
Q ss_pred hhH
Q 024993 79 AGL 81 (259)
Q Consensus 79 ~G~ 81 (259)
.|.
T Consensus 91 ~g~ 93 (209)
T 2raf_A 91 NPL 93 (209)
T ss_dssp CCB
T ss_pred CCC
Confidence 543
No 96
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=58.13 E-value=28 Score=25.99 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=29.4
Q ss_pred CEEEEEec--CCChHHH----HHHHHhCCCeEEEeCC----CCCCC-CcCEEEEcC
Q 024993 1 MVVGVLAL--QGSFNEH----IAALKRLGVKGVEIRK----PDQLQ-NVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~--~G~~~~~----~~~L~~~G~~v~~~~~----~~~l~-~~d~iil~G 45 (259)
|||+|+-. .|+=..+ .+.|+..|+++.+++. .+++. ++|.||+.-
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~ 57 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGC 57 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEe
Confidence 58988864 3443333 3456677888888653 24677 899988843
No 97
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=58.12 E-value=16 Score=28.81 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=31.2
Q ss_pred CEEEEEecCC-------------C-h-HHHHHHHHhCCCeEEEe---CCC-C----------CCCCcCEEEEcCCch
Q 024993 1 MVVGVLALQG-------------S-F-NEHIAALKRLGVKGVEI---RKP-D----------QLQNVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~G-------------~-~-~~~~~~L~~~G~~v~~~---~~~-~----------~l~~~d~iil~GG~~ 48 (259)
|||+||...+ + . .-+.++|++.|+++... .+. + ...++|.||.+||.+
T Consensus 16 ~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 6889986432 1 1 12557899999988653 332 1 124689999999853
No 98
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=56.50 E-value=0.83 Score=36.27 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=25.1
Q ss_pred CCcCEEEEcCCchh-----HHHHHHhhCCHHHHHHHHHHcCCcEEEEch
Q 024993 36 QNVSSLIIPGGEST-----TMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (259)
Q Consensus 36 ~~~d~iil~GG~~~-----~~~~l~~~~~~~~~i~~~~~~g~PiLGIC~ 79 (259)
.++|.||+.||... ..++ ..+.|.+..+.+..+.|||+
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~------v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIED------VKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHH------HHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCCCHHH------HHHHHHHhhcCCCCEEEEEh
Confidence 57899999998421 1122 24556665555677999996
No 99
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=54.32 E-value=18 Score=28.33 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=28.1
Q ss_pred CEEEEEecC--CChHH----HHHHHHh-CCCeEEEeCCC-----------------------CCCCCcCEEEEcC
Q 024993 1 MVVGVLALQ--GSFNE----HIAALKR-LGVKGVEIRKP-----------------------DQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~--G~~~~----~~~~L~~-~G~~v~~~~~~-----------------------~~l~~~d~iil~G 45 (259)
|||+|+... |+-.. +.+.+++ .|+++++++.. +++.++|+||+.-
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 76 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGT 76 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEE
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEe
Confidence 699999753 22222 3445666 78888876432 2345789998844
No 100
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=54.30 E-value=14 Score=29.18 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=31.2
Q ss_pred CEEEEEecCCC--------hHHHHHHHHhCCCeEEEe---CCC-C--------CCC--CcCEEEEcCCch
Q 024993 1 MVVGVLALQGS--------FNEHIAALKRLGVKGVEI---RKP-D--------QLQ--NVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~G~--------~~~~~~~L~~~G~~v~~~---~~~-~--------~l~--~~d~iil~GG~~ 48 (259)
|||+||...+. -..+.++|++.|+++... .+. + .++ ++|.||.+||.+
T Consensus 14 ~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 14 VRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred CEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 68999975321 123557788899977643 332 1 124 799999999853
No 101
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=54.21 E-value=12 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=20.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCe-EEEeCCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVK-GVEIRKP 32 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~-v~~~~~~ 32 (259)
|||+|+ |+ .+...-++..|++ +..+.++
T Consensus 1 MkiaVI---GD-~dtv~GFrLaGi~~v~~v~~~ 29 (101)
T 2ov6_A 1 MELAVI---GK-SEFVTGFRLAGISKVYETPDI 29 (101)
T ss_dssp CCEEEE---EC-HHHHHHHHHHTCCEEEECCST
T ss_pred CEEEEE---EC-HHHHHHHHHcCCCceEecCCH
Confidence 999999 45 5667788889998 5444443
No 102
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=51.23 E-value=29 Score=27.44 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=45.8
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCCC------CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~------l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
|||+|++.+-.... +...|+..|+++....+.++ -..+|.+|+|+... .+ +.+.|++. ....|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp~~~g--~~-------~~~~lr~~-~~~~~ 70 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNA--LS-------FVSRIKEK-HSSIV 70 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEECCTTH--HH-------HHHHHHHH-CTTSE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeCCCCH--HH-------HHHHHHhC-CCCCc
Confidence 89999975433333 45677788998887665321 13689988555321 11 23445554 22789
Q ss_pred EEEEchh--HHHHHHhh
Q 024993 74 VWGTCAG--LIFLANKA 88 (259)
Q Consensus 74 iLGIC~G--~QlL~~~~ 88 (259)
++.+..- .+....++
T Consensus 71 ii~lt~~~~~~~~~~~~ 87 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAF 87 (223)
T ss_dssp EEEEESSCCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHH
Confidence 9888754 33444444
No 103
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=50.84 E-value=22 Score=27.89 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=19.1
Q ss_pred CEEEEEecC--CChH----HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~--G~~~----~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|+... |+-. .+.+.++..|+++++++.
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l 42 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTV 42 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 489999753 2212 234456667888887653
No 104
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=49.89 E-value=15 Score=29.03 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=30.5
Q ss_pred CEEEEEecCCC--------hHHHHHHHHhCCCeEEEe---CCC-CC--------CC--CcCEEEEcCCc
Q 024993 1 MVVGVLALQGS--------FNEHIAALKRLGVKGVEI---RKP-DQ--------LQ--NVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G~--------~~~~~~~L~~~G~~v~~~---~~~-~~--------l~--~~d~iil~GG~ 47 (259)
|||+||...+. -..+.+.|++.|+++... .+. +. ++ ++|.||.+||.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 68999975321 123557889999987653 332 11 22 39999999974
No 105
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=49.18 E-value=16 Score=28.76 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=30.7
Q ss_pred CEEEEEecC-----CC----h-HHHHHHHHhCCCeEEE---eCCCCC--------C-CCcCEEEEcCCch
Q 024993 1 MVVGVLALQ-----GS----F-NEHIAALKRLGVKGVE---IRKPDQ--------L-QNVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~-----G~----~-~~~~~~L~~~G~~v~~---~~~~~~--------l-~~~d~iil~GG~~ 48 (259)
|||+||... |. . ..+..+|++.|+++.. +.+.+. + .++|.||.+||.+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVittGG~s 77 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGGTG 77 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 578999743 21 1 2355788999997753 444331 2 3699999999854
No 106
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=48.72 E-value=20 Score=30.33 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHHHHHhCCCeEEEeCCC----------CCCCCcCEEEEcC-CchhHH---H-HHHh--hCCHHHHHHHHHHcCCcEEE
Q 024993 14 EHIAALKRLGVKGVEIRKP----------DQLQNVSSLIIPG-GESTTM---A-RLAE--YHNLFPALREFVKMGKPVWG 76 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~----------~~l~~~d~iil~G-G~~~~~---~-~l~~--~~~~~~~i~~~~~~g~PiLG 76 (259)
.+.++|+..+++|+.++.. ++|+++|.||+.. +..... + +... .....+.|++++++|.-++.
T Consensus 37 ~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~ 116 (248)
T 3soz_A 37 YLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLM 116 (248)
T ss_dssp HHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEEE
Confidence 3678899999999987642 2457899999986 321110 0 1100 12347899999999988888
Q ss_pred Ec
Q 024993 77 TC 78 (259)
Q Consensus 77 IC 78 (259)
+.
T Consensus 117 ~g 118 (248)
T 3soz_A 117 IG 118 (248)
T ss_dssp EC
T ss_pred Ec
Confidence 74
No 107
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=47.81 E-value=1e+02 Score=25.05 Aligned_cols=68 Identities=22% Similarity=0.413 Sum_probs=40.3
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHH
Q 024993 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (259)
Q Consensus 2 ki~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~ 62 (259)
+|+|+.-. .+ |. .+.+++++.|+++.+.....+ + .++|+||+.+...... .+
T Consensus 7 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---------~~ 77 (291)
T 3l49_A 7 TIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVL---------NP 77 (291)
T ss_dssp EEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHH---------HH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh---------HH
Confidence 57777532 22 22 245677888999988743211 1 3799999876543221 13
Q ss_pred HHHHHHHcCCcEEEEc
Q 024993 63 ALREFVKMGKPVWGTC 78 (259)
Q Consensus 63 ~i~~~~~~g~PiLGIC 78 (259)
.++++.++++|+..+-
T Consensus 78 ~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 78 WLQKINDAGIPLFTVD 93 (291)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHHCCCcEEEec
Confidence 3445556789987763
No 108
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=47.61 E-value=48 Score=28.77 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=46.7
Q ss_pred EEEEEecC--CC---hHHHHHHHHhCCCeEEEeCC--CCC-------C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHH
Q 024993 2 VVGVLALQ--GS---FNEHIAALKRLGVKGVEIRK--PDQ-------L--QNVSSLIIPGGESTTMARLAEYHNLFPALR 65 (259)
Q Consensus 2 ki~vl~~~--G~---~~~~~~~L~~~G~~v~~~~~--~~~-------l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~ 65 (259)
|++|+.++ |. +..+.++|++.|+++.+... +.+ + ..+|.||..||..+..+ .++
T Consensus 31 ~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~----------v~~ 100 (332)
T 2bon_A 31 ASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINE----------VST 100 (332)
T ss_dssp CEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHH----------HHH
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHH----------HHH
Confidence 58888764 32 34567788889998877532 211 1 36899999998655432 222
Q ss_pred HHH----HcCCcEEEEchhH-HHHHHhhc
Q 024993 66 EFV----KMGKPVWGTCAGL-IFLANKAV 89 (259)
Q Consensus 66 ~~~----~~g~PiLGIC~G~-QlL~~~~~ 89 (259)
... ..+.|+..|=+|- =.++..++
T Consensus 101 ~l~~~~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 101 ALIQCEGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp HHHHCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred HHhhcccCCCCeEEEecCcCHHHHHHhcC
Confidence 222 3567877773443 34666664
No 109
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=47.54 E-value=12 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=21.2
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP 32 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~ 32 (259)
|||+|+ |+ .+...-++..|+++.++.++
T Consensus 4 mkiaVI---gD-~dtv~GFrLaGi~~~~v~~~ 31 (109)
T 2d00_A 4 VRMAVI---AD-PETAQGFRLAGLEGYGASSA 31 (109)
T ss_dssp CCEEEE---EC-HHHHHHHHHTTSEEEECSSH
T ss_pred cEEEEE---eC-HHHHHHHHHcCCeEEEeCCH
Confidence 899999 45 56677889999987666443
No 110
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=46.87 E-value=10 Score=29.78 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=30.5
Q ss_pred CEEEEEecCC---------Ch-HHHHHHHHhCCCeEEEe---CCC-C--------CCC--CcCEEEEcCCch
Q 024993 1 MVVGVLALQG---------SF-NEHIAALKRLGVKGVEI---RKP-D--------QLQ--NVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~G---------~~-~~~~~~L~~~G~~v~~~---~~~-~--------~l~--~~d~iil~GG~~ 48 (259)
|||+||...+ .. ..+.++|++.|+++..+ .+. + .++ ++|.||.+||.+
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 6789987421 12 23557788899877643 332 1 123 699999999854
No 111
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=46.56 E-value=35 Score=28.46 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=31.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEe-CCC------------CCCCCcCEEEEcC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI-RKP------------DQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~-~~~------------~~l~~~d~iil~G 45 (259)
|||+|.--.|-.. .+.+.|.+.|++|+.+ +.+ +.++++|.+|=.-
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEec
Confidence 9999885444444 4678999999999875 322 1467889887543
No 112
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=46.37 E-value=75 Score=23.51 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=45.9
Q ss_pred EEEEecC---CChH-HHHHHHHhCCCeEEEeCCC-------------CCCCCcCEEEEcCCch---hHHHHHHhh-----
Q 024993 3 VGVLALQ---GSFN-EHIAALKRLGVKGVEIRKP-------------DQLQNVSSLIIPGGES---TTMARLAEY----- 57 (259)
Q Consensus 3 i~vl~~~---G~~~-~~~~~L~~~G~~v~~~~~~-------------~~l~~~d~iil~GG~~---~~~~~l~~~----- 57 (259)
|||+-.. +.+. .+.+.|.+.|+++..+.+. .++++.|.+++.=... ...++..+.
T Consensus 7 iAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~e~~~~g~k~v 86 (122)
T 3ff4_A 7 TLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLKPKRV 86 (122)
T ss_dssp EEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHCCSEE
T ss_pred EEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHHHHHhcCCCEE
Confidence 7888643 3344 3568888889987777542 2444478887754322 222222110
Q ss_pred ---CC--HHHHHHHHHHcCCcEEEEchhHHH
Q 024993 58 ---HN--LFPALREFVKMGKPVWGTCAGLIF 83 (259)
Q Consensus 58 ---~~--~~~~i~~~~~~g~PiLGIC~G~Ql 83 (259)
.+ -.+.++.+.+.|+.+++=|+|.++
T Consensus 87 ~~~~G~~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 87 IFNPGTENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp EECTTCCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred EECCCCChHHHHHHHHHcCCeEECCcCeEEe
Confidence 00 124444555578888888888775
No 113
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=45.68 E-value=26 Score=27.86 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=30.7
Q ss_pred CEEEEEecC----------CCh-----HHHHHHHHhCCCeEEEe---CCC-C--------CCCC--cCEEEEcCCch
Q 024993 1 MVVGVLALQ----------GSF-----NEHIAALKRLGVKGVEI---RKP-D--------QLQN--VSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~----------G~~-----~~~~~~L~~~G~~v~~~---~~~-~--------~l~~--~d~iil~GG~~ 48 (259)
+||+||... |.. ..+..+|++.|+++..+ .+. + .+++ +|.||.+||.+
T Consensus 16 ~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 578888754 321 13457889999987653 332 1 1234 89999999853
No 114
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=45.59 E-value=67 Score=25.16 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=23.7
Q ss_pred hHHHHHHHH----hCCCeEEEeCCC-C---------CCCCcCEEEE-cCCch
Q 024993 12 FNEHIAALK----RLGVKGVEIRKP-D---------QLQNVSSLII-PGGES 48 (259)
Q Consensus 12 ~~~~~~~L~----~~G~~v~~~~~~-~---------~l~~~d~iil-~GG~~ 48 (259)
+.++.+.++ +.|+++..+... + ...++|+||+ ||++.
T Consensus 34 l~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~T 85 (153)
T 3lwz_A 34 LAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFT 85 (153)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccce
Confidence 445555554 478888887432 1 1256899988 88865
No 115
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=45.49 E-value=54 Score=28.03 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=47.8
Q ss_pred EEEEEecC--CC------hHHHHHHHHhCCCeEEEeCC--CC-------C-CCCcCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIRK--PD-------Q-LQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~~~--G~------~~~~~~~L~~~G~~v~~~~~--~~-------~-l~~~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
|++|+.++ |+ +..+.+.|+..|++++++.. +. + .+++|.||..||..+..+ .
T Consensus 10 ~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~----------v 79 (304)
T 3s40_A 10 KVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFE----------C 79 (304)
T ss_dssp SEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHH----------H
T ss_pred EEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHH----------H
Confidence 68888775 32 23456778888988877532 21 1 247899999998654422 2
Q ss_pred HHHHHH--cCCcEEEEchhHH-HHHHhhc
Q 024993 64 LREFVK--MGKPVWGTCAGLI-FLANKAV 89 (259)
Q Consensus 64 i~~~~~--~g~PiLGIC~G~Q-lL~~~~~ 89 (259)
+..... .+.|+..|=+|-. .+++.++
T Consensus 80 ~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 80 TNGLAPLEIRPTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp HHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred HHHHhhCCCCCcEEEecCCcHHHHHHHcC
Confidence 222222 4677777766665 6677664
No 116
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=45.10 E-value=38 Score=30.02 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=28.6
Q ss_pred CEEEEEecC--CChHH----HHHHHHhCCCeEEEeCCCC--------CCCCcCEEEEcC
Q 024993 1 MVVGVLALQ--GSFNE----HIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~--G~~~~----~~~~L~~~G~~v~~~~~~~--------~l~~~d~iil~G 45 (259)
|||+|+... |+=.. +.+.+...|++++++...+ ++.++|+||+..
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigs 315 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFAS 315 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEEC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEc
Confidence 688888643 33222 3345566788888775321 356899999965
No 117
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=44.45 E-value=96 Score=25.12 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=30.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEE-eCCC----------CC-C-CCcCEEEEcCCc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVE-IRKP----------DQ-L-QNVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~-~~~~----------~~-l-~~~d~iil~GG~ 47 (259)
|||+|+-. |... .+.+.|...|++++. +... ++ + .++|.|++.-..
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~ 60 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQ 60 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCH
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCH
Confidence 89999976 6655 355667678888753 3211 11 3 478999886653
No 118
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=43.94 E-value=7.3 Score=35.37 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=42.3
Q ss_pred EEEEEecCCCh------HHHHHHHHhC--CCeEEEeCCC-----CC----------------------C-CCcCEEEEcC
Q 024993 2 VVGVLALQGSF------NEHIAALKRL--GVKGVEIRKP-----DQ----------------------L-QNVSSLIIPG 45 (259)
Q Consensus 2 ki~vl~~~G~~------~~~~~~L~~~--G~~v~~~~~~-----~~----------------------l-~~~d~iil~G 45 (259)
+|+|+...+.- ..+.++|++. |+++.+-... .. + .++|.+|.-|
T Consensus 43 ~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvlG 122 (388)
T 3afo_A 43 NVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLG 122 (388)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHHHHHCSEEEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccccccccccccccccccchhhcccCCCEEEEEe
Confidence 58999876652 2456778777 7776542110 00 0 1479999998
Q ss_pred CchhHHHHHHhhCCHHHHHHHHHHcCC-cEEEEchhH
Q 024993 46 GESTTMARLAEYHNLFPALREFVKMGK-PVWGTCAGL 81 (259)
Q Consensus 46 G~~~~~~~l~~~~~~~~~i~~~~~~g~-PiLGIC~G~ 81 (259)
|..+.+. .++.+...++ |+|||=.|.
T Consensus 123 GDGTlL~----------aa~~~~~~~vpPiLGIN~G~ 149 (388)
T 3afo_A 123 GDGTILH----------GVSMFGNTQVPPVLAFALGT 149 (388)
T ss_dssp SHHHHHH----------HHHTTTTSCCCCEEEEECSS
T ss_pred CcHHHHH----------HHHHhcccCCCeEEEEECCC
Confidence 8655432 2233334567 899998763
No 119
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.73 E-value=1.3e+02 Score=24.41 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=40.1
Q ss_pred EEEEEecC-CC-hH-----HHHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHH
Q 024993 2 VVGVLALQ-GS-FN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (259)
Q Consensus 2 ki~vl~~~-G~-~~-----~~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~ 62 (259)
+|+|+.-. .+ |. .+.+++++.|+++.+.....+ + ..+|+||+.+...... .+
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---------~~ 80 (293)
T 3l6u_A 10 IVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYI---------GS 80 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTT---------HH
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH---------HH
Confidence 57777532 22 22 244667788999988754311 1 4799999976432221 13
Q ss_pred HHHHHHHcCCcEEEEc
Q 024993 63 ALREFVKMGKPVWGTC 78 (259)
Q Consensus 63 ~i~~~~~~g~PiLGIC 78 (259)
.++++.+.++|+..+.
T Consensus 81 ~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 81 AIEEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCCEEEec
Confidence 3445556789987764
No 120
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=42.62 E-value=49 Score=28.59 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=11.6
Q ss_pred CCCCcCEEEEcCCc
Q 024993 34 QLQNVSSLIIPGGE 47 (259)
Q Consensus 34 ~l~~~d~iil~GG~ 47 (259)
++.++|.+|++.|.
T Consensus 66 ~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 66 LLKGSEIIVVTAGL 79 (294)
T ss_dssp GGTTCSEEEECCCC
T ss_pred HhCCCCEEEEecCC
Confidence 46789999999984
No 121
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=41.95 E-value=37 Score=29.84 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=28.4
Q ss_pred CEEEEEecC--CChHH----HHHHHHhCCCeEEEeCCCC--------CCCCcCEEEEcC
Q 024993 1 MVVGVLALQ--GSFNE----HIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~--G~~~~----~~~~L~~~G~~v~~~~~~~--------~l~~~d~iil~G 45 (259)
||++|+... |+-.. +.+.+.+.|++++++...+ ++.++|+||+.-
T Consensus 257 ~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigs 315 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGA 315 (404)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEEC
T ss_pred CcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence 688888643 33222 3345566788888875432 356899999954
No 122
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=41.53 E-value=21 Score=28.35 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=28.6
Q ss_pred CEEEEEecCCC---------h-HHHHHHHH---hCCCeEEE--eCCC-C--------CCC--CcCEEEEcCCc
Q 024993 1 MVVGVLALQGS---------F-NEHIAALK---RLGVKGVE--IRKP-D--------QLQ--NVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G~---------~-~~~~~~L~---~~G~~v~~--~~~~-~--------~l~--~~d~iil~GG~ 47 (259)
|||+||...+. . ..+.++|+ +.|+++.. +.+. + .++ ++|.||.+||.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 68999985221 1 12446666 78998732 2332 1 123 69999999974
No 123
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=41.19 E-value=25 Score=29.94 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=29.7
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCC----------------CCCCCcCEEEEc
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP----------------DQLQNVSSLIIP 44 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~----------------~~l~~~d~iil~ 44 (259)
|||+|+..........+.|.+.|+++.+...+ +.+.++|+++.+
T Consensus 6 m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 65 (293)
T 3d4o_A 6 KHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLP 65 (293)
T ss_dssp CEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECC
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEec
Confidence 89999854322335668899999998875421 124578998875
No 124
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=41.05 E-value=21 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=18.5
Q ss_pred CEEEEEecC---CChH-HHHHHHHh---CCCeEEEeCC
Q 024993 1 MVVGVLALQ---GSFN-EHIAALKR---LGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~---G~~~-~~~~~L~~---~G~~v~~~~~ 31 (259)
|||+|+... ++.. .+.+++.+ .|++++++..
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl 44 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADI 44 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeH
Confidence 799999743 1233 34555533 3778888653
No 125
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=40.26 E-value=27 Score=27.79 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=19.0
Q ss_pred CEEEEEecC--CChH----HHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~--G~~~----~~~~~L~~~G~~v~~~~ 30 (259)
|||+|+... |+-. .+.+.+++.|++++++.
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~ 42 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLK 42 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEe
Confidence 789999753 2212 23455666789888764
No 126
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=40.00 E-value=27 Score=27.42 Aligned_cols=30 Identities=17% Similarity=-0.134 Sum_probs=17.9
Q ss_pred CEEEEEecCCChH-H----HHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSFN-E----HIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~~-~----~~~~L~~~G~~v~~~~ 30 (259)
|||+|+....... . +.+.+++.|++++++.
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~ 39 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRR 39 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 6899997551111 1 2344555688888764
No 127
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=39.84 E-value=28 Score=30.18 Aligned_cols=31 Identities=19% Similarity=0.046 Sum_probs=23.7
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~ 31 (259)
|||+++..++. ...+.++|.++|.+|+++..
T Consensus 23 MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 23 MRALFITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 99999876432 22567899999999998754
No 128
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=39.83 E-value=18 Score=30.31 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=30.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCCCCCcC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQLQNVS 39 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~l~~~d 39 (259)
|||+||-. |... ++.+.|++.|.++..+..++++.++|
T Consensus 7 mkI~IIG~-G~~G~sLA~~L~~~G~~V~~~~~~~~~~~aD 45 (232)
T 3dfu_A 7 LRVGIFDD-GSSTVNMAEKLDSVGHYVTVLHAPEDIRDFE 45 (232)
T ss_dssp CEEEEECC-SCCCSCHHHHHHHTTCEEEECSSGGGGGGCS
T ss_pred cEEEEEee-CHHHHHHHHHHHHCCCEEEEecCHHHhccCC
Confidence 89999975 6664 57789999999988876655677788
No 129
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=38.95 E-value=79 Score=24.79 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=38.9
Q ss_pred CEEEEEecCCC--hH-----HHHHHHHhCCCeEEEeCCCC------------CC-----CCcCEEEEcC----CchhHHH
Q 024993 1 MVVGVLALQGS--FN-----EHIAALKRLGVKGVEIRKPD------------QL-----QNVSSLIIPG----GESTTMA 52 (259)
Q Consensus 1 mki~vl~~~G~--~~-----~~~~~L~~~G~~v~~~~~~~------------~l-----~~~d~iil~G----G~~~~~~ 52 (259)
+||+|+..+=| .. ...+.|++.|.++.+++.|- +- .+||+||.-| |.-...+
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd 92 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFD 92 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTH
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHH
Confidence 47888874322 11 23467778898777765441 11 4699987766 3211122
Q ss_pred HHHhhCCHHHHHHHHHHcCCcE
Q 024993 53 RLAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 53 ~l~~~~~~~~~i~~~~~~g~Pi 74 (259)
.+..+ -....++-.++.++||
T Consensus 93 ~Va~~-v~~gl~~vsl~~~vPV 113 (157)
T 2i0f_A 93 IVSNE-SCRALTDLSVEESIAI 113 (157)
T ss_dssp HHHHH-HHHHHHHHHHHTTCCE
T ss_pred HHHHH-HHHHHHHHHhhcCCCE
Confidence 22211 1123444455678995
No 130
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=38.92 E-value=50 Score=24.04 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=40.0
Q ss_pred CEEEEEecCCChHH-----HHHHHHhCCCeEEEeC--CC---CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHH-
Q 024993 1 MVVGVLALQGSFNE-----HIAALKRLGVKGVEIR--KP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK- 69 (259)
Q Consensus 1 mki~vl~~~G~~~~-----~~~~L~~~G~~v~~~~--~~---~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~- 69 (259)
|||.++=..|-=.+ +.++.++.|+++.+.. .. +.++++|.|+++-=.... .+.+++..+
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~----------~~~ik~~~~~ 76 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSY----------YREMKVDAER 76 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGG----------HHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHH----------HHHHHHHhhh
Confidence 78888866564333 3456677898888743 22 235689998874311111 233444443
Q ss_pred cCCcEEEEc
Q 024993 70 MGKPVWGTC 78 (259)
Q Consensus 70 ~g~PiLGIC 78 (259)
.++|+.-|=
T Consensus 77 ~~ipV~vI~ 85 (108)
T 3nbm_A 77 LGIQIVATR 85 (108)
T ss_dssp TTCEEEECC
T ss_pred cCCcEEEeC
Confidence 489988775
No 131
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=38.67 E-value=1.4e+02 Score=24.54 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=40.1
Q ss_pred EEEEEecCC-C--hHH----HHHHHHhCCCeEEEeCCC--CC-------C-----CCcCEEEEcCCchhHHHHHHhhCCH
Q 024993 2 VVGVLALQG-S--FNE----HIAALKRLGVKGVEIRKP--DQ-------L-----QNVSSLIIPGGESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G-~--~~~----~~~~L~~~G~~v~~~~~~--~~-------l-----~~~d~iil~GG~~~~~~~l~~~~~~ 60 (259)
+|+|+.-.- + +.. +.+++++.|+++.+.... .+ + .++|+||+.+......
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~--------- 75 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAF--------- 75 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTT---------
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH---------
Confidence 688885322 1 222 445677789999887633 11 1 4799999976432221
Q ss_pred HHHHHHHHHcCCcEEEEc
Q 024993 61 FPALREFVKMGKPVWGTC 78 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC 78 (259)
...++++.+.++|+..+-
T Consensus 76 ~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 133444455688887664
No 132
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=38.46 E-value=1.6e+02 Score=23.87 Aligned_cols=55 Identities=11% Similarity=0.216 Sum_probs=31.8
Q ss_pred HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.+++++.|+++.+.....+ + .++|+||+.+...... .+.++++.+.++|+..+.
T Consensus 24 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---------~~~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 24 AKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS---------IANVKRAKEAGIPVFCVD 90 (290)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT---------HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH---------HHHHHHHHHCCCeEEEEe
Confidence 34567788998887643211 1 4799999976432211 122333345688876653
No 133
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=38.01 E-value=53 Score=30.60 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=45.1
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCC---C-------------------CCC-CCcCEEEEcCCchhH---HHH
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRK---P-------------------DQL-QNVSSLIIPGGESTT---MAR 53 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~---~-------------------~~l-~~~d~iil~GG~~~~---~~~ 53 (259)
+||.|+-..|+-.+ +.+.|.+.|++|...+. + +.+ .++|.||.+-|.+.. ...
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~ 99 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEY 99 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHH
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHH
Confidence 56888877777665 56778888888877532 1 122 358999986653211 111
Q ss_pred HHh-hC---CHHHHHHHHHHcCCcEEEEchh
Q 024993 54 LAE-YH---NLFPALREFVKMGKPVWGTCAG 80 (259)
Q Consensus 54 l~~-~~---~~~~~i~~~~~~g~PiLGIC~G 80 (259)
.++ .. .-.+++.+......|++||..-
T Consensus 100 a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGT 130 (524)
T 3hn7_A 100 MLDTGLRYTSGPQFLSEQVLQSRHVIAVAGT 130 (524)
T ss_dssp HHHHTCCEEEHHHHHHHHTGGGSEEEEEECS
T ss_pred HHHCCCcEEEHHHHHHHHHhccCcEEEEECC
Confidence 111 01 1124444433346788888843
No 134
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=37.97 E-value=1.1e+02 Score=23.86 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=37.6
Q ss_pred CEEEEEecCCChH-------HHHHHHHhCC-C---eEEEeCCCC--C-------C---CCcCEEEEcC----CchhHHHH
Q 024993 1 MVVGVLALQGSFN-------EHIAALKRLG-V---KGVEIRKPD--Q-------L---QNVSSLIIPG----GESTTMAR 53 (259)
Q Consensus 1 mki~vl~~~G~~~-------~~~~~L~~~G-~---~v~~~~~~~--~-------l---~~~d~iil~G----G~~~~~~~ 53 (259)
+||+|+..+=|-. ...+.|++.| + ++.+++.|- + + .+||+||..| |.....+.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~ 92 (156)
T 3nq4_A 13 ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEY 92 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSSTHHHH
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHH
Confidence 4788886432211 2346777888 5 566655432 1 1 4799988766 32222233
Q ss_pred HHhhCCHHHHHHHHHHcCCcE
Q 024993 54 LAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~Pi 74 (259)
+..+ -....++-.++.++||
T Consensus 93 Va~~-v~~Gl~~v~L~~~vPV 112 (156)
T 3nq4_A 93 VAGG-ASNGLASVAQDSGVPV 112 (156)
T ss_dssp HHHH-HHHHHHHHHHHHCCCE
T ss_pred HHHH-HHHHHHHHHhccCCCE
Confidence 3221 1123444445678885
No 135
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=37.81 E-value=1.3e+02 Score=24.89 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=38.9
Q ss_pred EEEEEecC--CC-hHH----HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHH
Q 024993 2 VVGVLALQ--GS-FNE----HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (259)
Q Consensus 2 ki~vl~~~--G~-~~~----~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~ 62 (259)
+|+|+.-. .. +.. +.+++++.|+++.+.....+ + .++|+||+.+...... .+
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~---------~~ 74 (313)
T 3m9w_A 4 KIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVL---------SN 74 (313)
T ss_dssp EEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSC---------HH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh---------HH
Confidence 57777532 22 233 45677788999888653211 1 4799999977532211 12
Q ss_pred HHHHHHHcCCcEEEE
Q 024993 63 ALREFVKMGKPVWGT 77 (259)
Q Consensus 63 ~i~~~~~~g~PiLGI 77 (259)
.++++.+.++|+.-+
T Consensus 75 ~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 75 VVKEAKQEGIKVLAY 89 (313)
T ss_dssp HHHHHHTTTCEEEEE
T ss_pred HHHHHHHCCCeEEEE
Confidence 344445568887655
No 136
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=37.30 E-value=36 Score=28.77 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=33.8
Q ss_pred CEEEEEecC-CCh---HHHHHHHHhCCCeEEEeCC------C--------CCCCCcCEEEEcCC
Q 024993 1 MVVGVLALQ-GSF---NEHIAALKRLGVKGVEIRK------P--------DQLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~-G~~---~~~~~~L~~~G~~v~~~~~------~--------~~l~~~d~iil~GG 46 (259)
|+|+|..-. ..- ..+.+.|++.|+++..++. + .++.++|.||++..
T Consensus 22 ~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~ 85 (286)
T 1jr2_A 22 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSP 85 (286)
T ss_dssp CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCH
T ss_pred CEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCH
Confidence 789999865 444 6788999999998776431 1 13467999999874
No 137
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=37.09 E-value=22 Score=28.44 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=30.5
Q ss_pred CEEEEEecCC---------------ChHHHHHHHH----hCCCeEEEeCCC-C-----C----CCCcCEEEE-cCCch
Q 024993 1 MVVGVLALQG---------------SFNEHIAALK----RLGVKGVEIRKP-D-----Q----LQNVSSLII-PGGES 48 (259)
Q Consensus 1 mki~vl~~~G---------------~~~~~~~~L~----~~G~~v~~~~~~-~-----~----l~~~d~iil-~GG~~ 48 (259)
|||+||+=+. ++.++.+.++ +.|+++..+... + . ..++|+||| ||++.
T Consensus 29 M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyT 106 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLT 106 (172)
T ss_dssp CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGG
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhh
Confidence 8999997221 2445555554 578999887433 2 1 135898888 88865
No 138
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=36.08 E-value=17 Score=28.48 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=27.4
Q ss_pred CEEEEEecC-----C----Ch-HHHHHH----HHhCCCeEEE---eCCC-CC--------CC-CcCEEEEcCCch
Q 024993 1 MVVGVLALQ-----G----SF-NEHIAA----LKRLGVKGVE---IRKP-DQ--------LQ-NVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~-----G----~~-~~~~~~----L~~~G~~v~~---~~~~-~~--------l~-~~d~iil~GG~~ 48 (259)
||++||... | .. ..+.+. |++.|+++.. +.+. +. ++ ++|.||.+||.+
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 578888742 2 12 235577 8888987754 3332 11 23 499999999853
No 139
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=35.97 E-value=19 Score=29.48 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=34.3
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC-----CC-------CCCCcCEEEEcCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK-----PD-------QLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~-----~~-------~l~~~d~iil~GG 46 (259)
|||+|..-...-..+.+.|++.|+++..++. .+ .+.++|.||++..
T Consensus 2 ~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~ 59 (240)
T 3mw8_A 2 MKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFIST 59 (240)
T ss_dssp CCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSH
T ss_pred CEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECH
Confidence 7888887666677888999999998876532 11 2467999999874
No 140
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.61 E-value=28 Score=24.57 Aligned_cols=43 Identities=12% Similarity=-0.068 Sum_probs=29.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|++...... .+.+.|++.|+++....+.++ + ..+|.||+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 4788886543333 355788889998887766432 1 36898887
No 141
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=35.56 E-value=30 Score=24.49 Aligned_cols=73 Identities=10% Similarity=-0.009 Sum_probs=40.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEE-EeCCCCCC------CCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGV-EIRKPDQL------QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKM 70 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~-~~~~~~~l------~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~ 70 (259)
|||+|++..-... .+.+.|+..|+.+. ...+.++. ..+|.||+-=..+ +..+ +.+.|++. ..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~-------~~~~l~~~-~~ 73 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ-------VLETLRKR-QY 73 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHH-------HHHHHHHT-TC
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHH-------HHHHHHhc-CC
Confidence 6889986533333 45578888998776 55554432 3689988832211 1111 22334432 23
Q ss_pred CCcEEEEchhH
Q 024993 71 GKPVWGTCAGL 81 (259)
Q Consensus 71 g~PiLGIC~G~ 81 (259)
..|++.++.-.
T Consensus 74 ~~~ii~~s~~~ 84 (134)
T 3f6c_A 74 SGIIIIVSAKN 84 (134)
T ss_dssp CSEEEEEECC-
T ss_pred CCeEEEEeCCC
Confidence 67887776533
No 142
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=35.19 E-value=42 Score=26.42 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=30.3
Q ss_pred CEEEEEecC-------------C--ChHHHHHHH----HhCCCeEEEeCC-CC-----CC----CCcCEEEE-cCCch
Q 024993 1 MVVGVLALQ-------------G--SFNEHIAAL----KRLGVKGVEIRK-PD-----QL----QNVSSLII-PGGES 48 (259)
Q Consensus 1 mki~vl~~~-------------G--~~~~~~~~L----~~~G~~v~~~~~-~~-----~l----~~~d~iil-~GG~~ 48 (259)
|||+||+=+ | ++.++.+.+ .+.|+++..+.. .+ .+ .++|+||| ||++.
T Consensus 7 m~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~T 84 (156)
T 1gtz_A 7 APIMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYS 84 (156)
T ss_dssp SCEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHH
T ss_pred ceEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhc
Confidence 789999722 1 244555544 456889988743 32 11 35899888 88865
No 143
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=35.12 E-value=28 Score=25.00 Aligned_cols=75 Identities=11% Similarity=0.008 Sum_probs=42.4
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHH-HHc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREF-VKM 70 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~-~~~ 70 (259)
|||+|++..-... .+.+.|+..|+++....+.++ + ..+|.||+-=..+ +..+ +.+.|++. ...
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-------~~~~l~~~~~~~ 79 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVS-------LIRALRRDSRTR 79 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHH-------HHHHHHTSGGGT
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-------HHHHHHhCcccC
Confidence 4788886533333 355778889999877765422 1 3689988832211 1111 12334431 124
Q ss_pred CCcEEEEchhHH
Q 024993 71 GKPVWGTCAGLI 82 (259)
Q Consensus 71 g~PiLGIC~G~Q 82 (259)
..|++.+..-..
T Consensus 80 ~~~ii~~s~~~~ 91 (140)
T 3grc_A 80 DLAIVVVSANAR 91 (140)
T ss_dssp TCEEEEECTTHH
T ss_pred CCCEEEEecCCC
Confidence 689888876543
No 144
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=34.92 E-value=1.5e+02 Score=24.21 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEEe-CCCCC-------C-----CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEI-RKPDQ-------L-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~-~~~~~-------l-----~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.+++++.|+++.++ ....+ + .++|+||+.+...... .+.++++.+.++|+.-+-
T Consensus 26 i~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~---------~~~~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 26 FEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL---------TDTINKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT---------HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH---------HHHHHHHHHCCCcEEEEC
Confidence 445677789999884 32211 1 3799999977533211 233445556788887654
No 145
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=34.79 E-value=1.9e+02 Score=23.86 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 024993 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGI 77 (259)
+.+++++.|+++.+.....+ + .++|+||+.+...... .+.++++.++++|+..+
T Consensus 25 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~---------~~~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTL---------SDVLKQAGEQGIKVIAY 90 (330)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGG---------HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhH---------HHHHHHHHHCCCCEEEE
Confidence 44677888999888653211 1 3799999977533221 13344455678887665
No 146
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=34.59 E-value=45 Score=26.75 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=29.6
Q ss_pred CEEEEEecC-------------C--ChHHHHHHH----H--hCCCeEEEeC-CCC---------CCCC-cCEEEE-cCCc
Q 024993 1 MVVGVLALQ-------------G--SFNEHIAAL----K--RLGVKGVEIR-KPD---------QLQN-VSSLII-PGGE 47 (259)
Q Consensus 1 mki~vl~~~-------------G--~~~~~~~~L----~--~~G~~v~~~~-~~~---------~l~~-~d~iil-~GG~ 47 (259)
|||+||+=+ | ++.++.+.+ . ..|+++..+. +.+ ...+ +|+||| ||++
T Consensus 10 M~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAy 89 (176)
T 2c4w_A 10 MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAF 89 (176)
T ss_dssp EEEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGG
T ss_pred cEEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchh
Confidence 889999721 2 344555444 4 5677888764 332 1134 899888 8886
Q ss_pred h
Q 024993 48 S 48 (259)
Q Consensus 48 ~ 48 (259)
.
T Consensus 90 T 90 (176)
T 2c4w_A 90 S 90 (176)
T ss_dssp G
T ss_pred c
Confidence 5
No 147
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=34.36 E-value=1.2e+02 Score=27.65 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=24.7
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~ 30 (259)
|||.|+-..|+-.+ +.+.|.+.|++|...+
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D 50 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSD 50 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEEcCHHHHHHHHHHHHhCCCeEEEEC
Confidence 57899988888776 7899999999888754
No 148
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=34.13 E-value=90 Score=24.54 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=37.8
Q ss_pred CEEEEEecCCCh--H-----HHHHHHHhCCC-eEEEeCCCC--C--------CCCcCEEEEcC----CchhHHHHHHhhC
Q 024993 1 MVVGVLALQGSF--N-----EHIAALKRLGV-KGVEIRKPD--Q--------LQNVSSLIIPG----GESTTMARLAEYH 58 (259)
Q Consensus 1 mki~vl~~~G~~--~-----~~~~~L~~~G~-~v~~~~~~~--~--------l~~~d~iil~G----G~~~~~~~l~~~~ 58 (259)
+||+|+..+=|- . ...+.|++.|+ ++.+++.|- + +.+||+||.-| |.....+....+
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~yDavIaLG~VIrG~T~Hfd~Va~~- 96 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDA- 96 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTSCSEEEEEEEEECCSSTHHHHHHHH-
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhcCCEEEEEeeeecCCchHHHHHHHH-
Confidence 478888743221 1 23466778887 455544331 1 23799988766 322222333221
Q ss_pred CHHHHHHHHHHcCCcEE
Q 024993 59 NLFPALREFVKMGKPVW 75 (259)
Q Consensus 59 ~~~~~i~~~~~~g~PiL 75 (259)
-....++-.++.++||.
T Consensus 97 vs~Gl~~v~L~~~vPV~ 113 (160)
T 2c92_A 97 VTQGLTRVSLDSSTPIA 113 (160)
T ss_dssp HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhhcCCCEE
Confidence 11234444556789954
No 149
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=33.62 E-value=21 Score=25.19 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=28.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|++..-... .+.+.|+..|+++....+.++ + ..+|.||+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 53 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFI 53 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEE
Confidence 3688886433333 455788899998887765432 1 36899888
No 150
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.54 E-value=51 Score=24.22 Aligned_cols=81 Identities=12% Similarity=-0.037 Sum_probs=44.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC------CCCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHH-c
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVK-M 70 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~-~ 70 (259)
|||+|++..-... .+.+.|+..|+++....+.++ -..+|.||+-=..+ +..+ +.+.|++... .
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~-------~~~~lr~~~~~~ 80 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYA-------LCRWLKGQPDLR 80 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHH-------HHHHHHHSTTTT
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-------HHHHHHhCCCcC
Confidence 5788886433333 355778888998887765421 13689998832111 1111 2234443211 3
Q ss_pred CCcEEEEch--hHHHHHHhh
Q 024993 71 GKPVWGTCA--GLIFLANKA 88 (259)
Q Consensus 71 g~PiLGIC~--G~QlL~~~~ 88 (259)
..|++.+.. .......++
T Consensus 81 ~~pii~~s~~~~~~~~~~~~ 100 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRSL 100 (154)
T ss_dssp TSCEEEEECCCSHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHH
Confidence 688888773 333444443
No 151
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=33.53 E-value=81 Score=26.73 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=29.3
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEeCCCCC-C-----CCcCEEEE
Q 024993 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEIRKPDQ-L-----QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~----------~~~~~~~L~~~G~~v~~~~~~~~-l-----~~~d~iil 43 (259)
|||+||. .|. -..+.++|++.|++++.+...+. + .++|.++.
T Consensus 14 ~~v~vl~-gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~ 71 (317)
T 4eg0_A 14 GKVAVLF-GGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN 71 (317)
T ss_dssp CEEEEEC-CCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred ceEEEEE-CCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence 6799994 332 22467899999999999875432 2 36888776
No 152
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=33.46 E-value=23 Score=29.97 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=28.8
Q ss_pred CEEEEEecCCC-------hH---HHHHHHHhCCCeEEEeCCCC------CCCCcCEEEE
Q 024993 1 MVVGVLALQGS-------FN---EHIAALKRLGVKGVEIRKPD------QLQNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~-------~~---~~~~~L~~~G~~v~~~~~~~------~l~~~d~iil 43 (259)
|||+||. .|. .. .+.++|++.|+++..+...+ .+.++|.++.
T Consensus 4 m~v~vl~-gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~ 61 (307)
T 3r5x_A 4 MRIGVIM-GGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALL 61 (307)
T ss_dssp EEEEEEE-CCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEE
T ss_pred cEEEEEe-CCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEE
Confidence 8999995 342 12 35677888899998876442 2357898776
No 153
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=33.39 E-value=24 Score=25.78 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=26.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|++..-... .+.+.|+..|+++..+.+.++ + ..+|.|++
T Consensus 15 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 64 (143)
T 3m6m_D 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIV 64 (143)
T ss_dssp CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 6788886433333 345678888998887765422 1 36899888
No 154
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=33.06 E-value=27 Score=27.43 Aligned_cols=45 Identities=11% Similarity=-0.002 Sum_probs=28.2
Q ss_pred CEEEEEecC--CChHH----HHHHHHh-CCCeEEEeCCCC----CCCCcCEEEEcC
Q 024993 1 MVVGVLALQ--GSFNE----HIAALKR-LGVKGVEIRKPD----QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~--G~~~~----~~~~L~~-~G~~v~~~~~~~----~l~~~d~iil~G 45 (259)
|||+|+... |+-.. +.+.++. .|++++++...+ ++.++|+||+.-
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gs 60 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGS 60 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEE
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEe
Confidence 489999643 22222 3345566 788888875432 355799999854
No 155
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=32.67 E-value=2.4e+02 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=18.7
Q ss_pred CEEEEEecCCCh--HHHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~--~~~~~~L~~~G~~v~~~ 29 (259)
|||+|+-. |.. ......+...+++++-+
T Consensus 27 irvgiiG~-G~~~~~~~~~~~~~~~~~lvav 56 (361)
T 3u3x_A 27 LRFAAVGL-NHNHIYGQVNCLLRAGARLAGF 56 (361)
T ss_dssp CEEEEECC-CSTTHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECc-CHHHHHHHHHHhhcCCcEEEEE
Confidence 47999976 433 24556677788887754
No 156
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=32.59 E-value=57 Score=28.80 Aligned_cols=45 Identities=11% Similarity=-0.010 Sum_probs=29.8
Q ss_pred CEEEEEecCCChHHHH-HHHHhCCCeEEEeCCC--C----CCCCcCEEEEcC
Q 024993 1 MVVGVLALQGSFNEHI-AALKRLGVKGVEIRKP--D----QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~~~~-~~L~~~G~~v~~~~~~--~----~l~~~d~iil~G 45 (259)
|||++......-.... ++++..|+++...... + .+.++|+|++.+
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~ 53 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKP 53 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECC
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcC
Confidence 8999998655444444 5566779888876532 2 245788887754
No 157
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=32.19 E-value=7 Score=23.55 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.3
Q ss_pred EEEEchhHHHHHHh
Q 024993 74 VWGTCAGLIFLANK 87 (259)
Q Consensus 74 iLGIC~G~QlL~~~ 87 (259)
..|-|+|.|+|..+
T Consensus 32 tagacfgaqimvaa 45 (48)
T 1ehs_A 32 TAGACFGAQIMVAA 45 (48)
T ss_dssp SCCTTTTTHHHHTT
T ss_pred ccccccchhHhhhc
Confidence 35789999999865
No 158
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=32.00 E-value=2.4e+02 Score=27.42 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=47.6
Q ss_pred CEEEEEecCC-Ch--------HHHHHHHHhCCCeEEEeCCCC-------CCCCcCEEEEcCCchh---HHHHHHhhCCHH
Q 024993 1 MVVGVLALQG-SF--------NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGEST---TMARLAEYHNLF 61 (259)
Q Consensus 1 mki~vl~~~G-~~--------~~~~~~L~~~G~~v~~~~~~~-------~l~~~d~iil~GG~~~---~~~~l~~~~~~~ 61 (259)
|||+|++-.- .. ..+..+|++.|++|....+.+ .-.++|+||+-=..+. .++-+ .+.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~----~ll 76 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVR----QLI 76 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHH----HHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHH----HHH
Confidence 8999997543 33 456678999999999887642 1125899998332211 11111 134
Q ss_pred HHHHHHHHcCCcEEEEchhHH
Q 024993 62 PALREFVKMGKPVWGTCAGLI 82 (259)
Q Consensus 62 ~~i~~~~~~g~PiLGIC~G~Q 82 (259)
+.||+. ..+.||+-+..=.+
T Consensus 77 ~~iR~~-~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 77 GKLHER-QQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHHH-STTCCEEEEECHHH
T ss_pred HHHHHh-CCCCCEEEEecCCc
Confidence 555553 23699999886544
No 159
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=31.88 E-value=29 Score=27.93 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=30.6
Q ss_pred CEEEEEecC-----CC---h-HHHHHHHHhCCCeEEEe---CCC-C-------C-C-CCcCEEEEcCCch
Q 024993 1 MVVGVLALQ-----GS---F-NEHIAALKRLGVKGVEI---RKP-D-------Q-L-QNVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~-----G~---~-~~~~~~L~~~G~~v~~~---~~~-~-------~-l-~~~d~iil~GG~~ 48 (259)
|||+||... |. . ..+...|++.|+++..+ ++. + + + .++|.||.+||.+
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts 100 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG 100 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 478888742 21 1 23557889999887653 332 1 1 2 4799999999853
No 160
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.85 E-value=65 Score=22.51 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=40.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC------CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
|||+|++...... .+.+.|+..|+.+....+.++ -..+|.||+-=..+.. +.+ .+.+.|++. ....|
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~-~g~----~~~~~l~~~-~~~~~ 81 (130)
T 3eod_A 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM-NGL----KLLEHIRNR-GDQTP 81 (130)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CH----HHHHHHHHT-TCCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCC-CHH----HHHHHHHhc-CCCCC
Confidence 5788886543333 455788999998887765421 1368988873321110 000 122344432 23678
Q ss_pred EEEEch
Q 024993 74 VWGTCA 79 (259)
Q Consensus 74 iLGIC~ 79 (259)
++.+..
T Consensus 82 ii~~t~ 87 (130)
T 3eod_A 82 VLVISA 87 (130)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 887764
No 161
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=31.73 E-value=1.1e+02 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=11.2
Q ss_pred CCCCcCEEEEcCCc
Q 024993 34 QLQNVSSLIIPGGE 47 (259)
Q Consensus 34 ~l~~~d~iil~GG~ 47 (259)
++.++|.+|++.|.
T Consensus 66 a~~~aDvVii~ag~ 79 (314)
T 3nep_X 66 PTEDSDVCIITAGL 79 (314)
T ss_dssp GGTTCSEEEECCCC
T ss_pred HhCCCCEEEECCCC
Confidence 45689999998874
No 162
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=31.68 E-value=46 Score=23.61 Aligned_cols=71 Identities=8% Similarity=-0.077 Sum_probs=41.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEE-eCCCCC----C--CCcCEEEEcCCch---hHHHHHHhhCCHHHHHHHHHH
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVE-IRKPDQ----L--QNVSSLIIPGGES---TTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~-~~~~~~----l--~~~d~iil~GG~~---~~~~~l~~~~~~~~~i~~~~~ 69 (259)
|||+|++...... .+.+.|+..|+++.. ..+.++ + ..+|.||+-=..+ +..+ +.+.|++.
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~-------~~~~l~~~-- 80 (140)
T 3cg0_A 10 PGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVE-------TAARLAAG-- 80 (140)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHH-------HHHHHHHH--
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHH-------HHHHHHhC--
Confidence 5788886433333 355678888998884 665322 1 2589988832111 1111 23445554
Q ss_pred cCCcEEEEchh
Q 024993 70 MGKPVWGTCAG 80 (259)
Q Consensus 70 ~g~PiLGIC~G 80 (259)
...|++.++.-
T Consensus 81 ~~~~ii~ls~~ 91 (140)
T 3cg0_A 81 CNLPIIFITSS 91 (140)
T ss_dssp SCCCEEEEECC
T ss_pred CCCCEEEEecC
Confidence 57899888743
No 163
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=31.49 E-value=40 Score=24.02 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=39.9
Q ss_pred EEEEEecCCChH-HHHHHHHhCC-CeEEEeCCCC----CC--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 2 VVGVLALQGSFN-EHIAALKRLG-VKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~G-~~v~~~~~~~----~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
||+|++..-... .+.+.|+..| +++....+.+ .+ ..+|.||+-=..+.. +. .++.+.|++.. ...|
T Consensus 16 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~-~g----~~~~~~l~~~~-~~~~ 89 (135)
T 3snk_A 16 QVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDL-LG----KPGIVEARALW-ATVP 89 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGG-GG----STTHHHHHGGG-TTCC
T ss_pred EEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCc-hH----HHHHHHHHhhC-CCCc
Confidence 688886433333 3557888899 8888776542 22 368988872211110 00 12234444432 3688
Q ss_pred EEEEch
Q 024993 74 VWGTCA 79 (259)
Q Consensus 74 iLGIC~ 79 (259)
++.++.
T Consensus 90 ii~~s~ 95 (135)
T 3snk_A 90 LIAVSD 95 (135)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 888764
No 164
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=30.96 E-value=80 Score=26.20 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=28.3
Q ss_pred CEEEEEecCCC----------hHHHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGS----------FNEHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~----------~~~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|+-. |. -..+.++++++|+++..+...+. + .++|.++.
T Consensus 3 ~~i~il~g-g~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~ 60 (306)
T 1iow_A 3 DKIAVLLG-GTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 (306)
T ss_dssp CEEEEECC-CSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEE
T ss_pred cEEEEEeC-CCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEE
Confidence 67999853 32 12467889999999998865421 2 35787765
No 165
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=30.89 E-value=38 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=28.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|++..-... .+.+.|+..|+.+....+..+ + ..+|.+++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~ 50 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIV 50 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEE
Confidence 7899986433333 355678888998877665421 1 35798887
No 166
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=30.83 E-value=49 Score=26.17 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=22.6
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|-.-+..+. .+.++|++.|++|+=+..
T Consensus 4 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G~ 37 (162)
T 2vvp_A 4 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGA 37 (162)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeCC
Confidence 8998887544333 467899999998887643
No 167
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=30.39 E-value=35 Score=27.45 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=29.7
Q ss_pred CEEEEEecCC-----C----h-HHHHHHHHh---CCCeEEEe---CCC-C-------C-CC--CcCEEEEcCCch
Q 024993 1 MVVGVLALQG-----S----F-NEHIAALKR---LGVKGVEI---RKP-D-------Q-LQ--NVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~G-----~----~-~~~~~~L~~---~G~~v~~~---~~~-~-------~-l~--~~d~iil~GG~~ 48 (259)
|||+||...+ . . ..+..+|++ .|+++... .+. + + ++ ++|.||.+||.+
T Consensus 15 ~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg 89 (189)
T 1jlj_A 15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTG 89 (189)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCC
Confidence 6899997421 1 1 234567777 79877653 332 1 1 22 689999999853
No 168
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=30.27 E-value=54 Score=27.87 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=28.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCC----------------CCCCCcCEEEE
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP----------------DQLQNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~----------------~~l~~~d~iil 43 (259)
|||+|+..........+.|.+.|+++.+...+ +.+.++|+|+.
T Consensus 8 mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~ 66 (300)
T 2rir_A 8 LKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIIL 66 (300)
T ss_dssp CEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEe
Confidence 78999854222335668888999998875321 12347899887
No 169
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=30.26 E-value=86 Score=23.21 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=29.1
Q ss_pred CEEEEEec--CCChHH----HHHHHHhCCCeEEEeCC--CCCCCCcCEEEEcC
Q 024993 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK--PDQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~--~G~~~~----~~~~L~~~G~~v~~~~~--~~~l~~~d~iil~G 45 (259)
|||.|+-. .|+=.. +.+.|...|+++.++.. .+++.++|.||+..
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~l~~~d~vi~g~ 54 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDLPASGIWLVIS 54 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCTTSCSSCSEEEEEEEC
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCCCHHHcccCCeEEEEE
Confidence 47888853 355333 34556667888887753 34567889888844
No 170
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=30.24 E-value=2.1e+02 Score=22.76 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred EEEEEecC--CChH-----HHHHHHHhCCCeEEEeCCC--CC----------C--CC-cCEEEEcCCchhHHHHHHhhCC
Q 024993 2 VVGVLALQ--GSFN-----EHIAALKRLGVKGVEIRKP--DQ----------L--QN-VSSLIIPGGESTTMARLAEYHN 59 (259)
Q Consensus 2 ki~vl~~~--G~~~-----~~~~~L~~~G~~v~~~~~~--~~----------l--~~-~d~iil~GG~~~~~~~l~~~~~ 59 (259)
||+|+.-. ..|. .+.+++++.|+++.+.... .+ + .+ +|+||+.+......
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~-------- 73 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDL-------- 73 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTT--------
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHH--------
Confidence 78888532 2222 2445677789999887521 11 1 25 99999987422111
Q ss_pred HHHHHHHHHHcCCcEEEEc
Q 024993 60 LFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 60 ~~~~i~~~~~~g~PiLGIC 78 (259)
.+.++++.+.++|+..+.
T Consensus 74 -~~~~~~~~~~~ipvV~~~ 91 (276)
T 3ksm_A 74 -TPSVAQYRARNIPVLVVD 91 (276)
T ss_dssp -HHHHHHHHHTTCCEEEES
T ss_pred -HHHHHHHHHCCCcEEEEe
Confidence 133445556789987763
No 171
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=29.87 E-value=53 Score=25.59 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=23.0
Q ss_pred CEEEEEecCCCh--H-HHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSF--N-EHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~--~-~~~~~L~~~G~~v~~~~ 30 (259)
|||+|-.-+..+ . .+.++|++.|++|+-+-
T Consensus 2 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G 34 (149)
T 2vvr_A 2 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKG 34 (149)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTTCEEEECC
T ss_pred cEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 899998766533 3 56789999999888763
No 172
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=29.85 E-value=66 Score=24.21 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=16.9
Q ss_pred CEEEEEecC--CChHHHHHHH-HhC-CCeEE
Q 024993 1 MVVGVLALQ--GSFNEHIAAL-KRL-GVKGV 27 (259)
Q Consensus 1 mki~vl~~~--G~~~~~~~~L-~~~-G~~v~ 27 (259)
|||+|+-+. |+=..+.+++ +.. +.++.
T Consensus 4 ~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~ 34 (151)
T 3edo_A 4 KKTLILYYSWSGETKKMAEKINSEIKDSELK 34 (151)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHSTTCEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHhccCCCEE
Confidence 489999653 4555566777 544 66643
No 173
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=29.85 E-value=59 Score=27.43 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=24.3
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP 32 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~~ 32 (259)
|||+|+.. |.-..+.++++++|+++.++...
T Consensus 3 m~Ililg~-g~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 3 VRIATYAS-HSALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp SEEEEESS-TTHHHHHHHHHHTTCCEEEESCG
T ss_pred eEEEEECC-hhHHHHHHHHHhCCCEEEEEECC
Confidence 78999964 45556789999999999887643
No 174
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=29.84 E-value=1.7e+02 Score=24.57 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=39.3
Q ss_pred CEEEEEecC--C-ChH-H----HHHHHHhCCCeEEEeCCCCC-----------C---CCcCEEEEcCCchhHHHHHHhhC
Q 024993 1 MVVGVLALQ--G-SFN-E----HIAALKRLGVKGVEIRKPDQ-----------L---QNVSSLIIPGGESTTMARLAEYH 58 (259)
Q Consensus 1 mki~vl~~~--G-~~~-~----~~~~L~~~G~~v~~~~~~~~-----------l---~~~d~iil~GG~~~~~~~l~~~~ 58 (259)
++|+++.-. . .|. . +.+++++.|+++.+.....+ + .++|+||+.+.....
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~-------- 75 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVA-------- 75 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHH--------
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhH--------
Confidence 368887532 2 122 2 34566778999888643211 1 379999997522111
Q ss_pred CHHHHHHHHHHcCCcEEEEc
Q 024993 59 NLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 59 ~~~~~i~~~~~~g~PiLGIC 78 (259)
.+.++++.++++|+..+.
T Consensus 76 --~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 76 --PQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp --HHHHHHHTTSCCEEEEEE
T ss_pred --HHHHHHHHhCCCcEEEEc
Confidence 133445556789988764
No 175
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=29.82 E-value=71 Score=24.96 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=21.8
Q ss_pred HHHHHH----HhCCCeEEEeCCC-C-----C----CCCcCEEEE-cCCch
Q 024993 14 EHIAAL----KRLGVKGVEIRKP-D-----Q----LQNVSSLII-PGGES 48 (259)
Q Consensus 14 ~~~~~L----~~~G~~v~~~~~~-~-----~----l~~~d~iil-~GG~~ 48 (259)
++.+.+ .+.|+++..+... + . ..++|+||+ ||++.
T Consensus 33 di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~T 82 (151)
T 3u80_A 33 TLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFT 82 (151)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCC
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhh
Confidence 444444 3478888887433 2 1 135798888 88864
No 176
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=29.41 E-value=1.7e+02 Score=22.91 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=39.4
Q ss_pred EEEEEecC---CChH-HHHHHHHhCCC--eEEEeCCCC---------CC---CCcCEEEEcC--CchhHHHHHHhhCCHH
Q 024993 2 VVGVLALQ---GSFN-EHIAALKRLGV--KGVEIRKPD---------QL---QNVSSLIIPG--GESTTMARLAEYHNLF 61 (259)
Q Consensus 2 ki~vl~~~---G~~~-~~~~~L~~~G~--~v~~~~~~~---------~l---~~~d~iil~G--G~~~~~~~l~~~~~~~ 61 (259)
||+|+..+ .... -..+.|++.|+ ++++++.|- .+ .+||+||..| |.-...+....+ -..
T Consensus 4 ri~IV~arfn~~~Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va~~-vs~ 82 (156)
T 2b99_A 4 KVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCAHE-ASL 82 (156)
T ss_dssp EEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHHHH-HHH
T ss_pred EEEEEEEecchHHHHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccCCcchhHHHHHH-HHH
Confidence 78998732 2322 34578888886 333344331 11 4799999877 432223333221 112
Q ss_pred HHHHHHHHcCCcEEE
Q 024993 62 PALREFVKMGKPVWG 76 (259)
Q Consensus 62 ~~i~~~~~~g~PiLG 76 (259)
.+++-.++.++||.-
T Consensus 83 Gl~~v~L~~~vPV~~ 97 (156)
T 2b99_A 83 GLMLAQLMTNKHIIE 97 (156)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHhhhCCCEEE
Confidence 334444567899653
No 177
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=29.31 E-value=1.7e+02 Score=23.21 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.+++++.|+++.+.....+ + .++|+||+.+..+... +.++.+.+.++|+..+.
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----------~~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 24 LEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPED----------DSYRELQDKGLPVIAID 89 (272)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC----------CHHHHHHHTTCCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH----------HHHHHHHHcCCCEEEEc
Confidence 44567788999988753321 1 4799999977532111 12223344688877654
No 178
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=29.14 E-value=1.3e+02 Score=25.67 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=11.0
Q ss_pred CCCCcCEEEEcCCc
Q 024993 34 QLQNVSSLIIPGGE 47 (259)
Q Consensus 34 ~l~~~d~iil~GG~ 47 (259)
.+.++|.+|++.|.
T Consensus 66 a~~~aDiVViaag~ 79 (294)
T 1oju_A 66 LLKGSEIIVVTAGL 79 (294)
T ss_dssp GGTTCSEEEECCCC
T ss_pred HhCCCCEEEECCCC
Confidence 45689999998873
No 179
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=29.10 E-value=62 Score=30.88 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCCc
Q 024993 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE 47 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG~ 47 (259)
...++|.++|+.+.+++..+++++|+.||+|.-.
T Consensus 429 ~~y~al~~~g~~vd~v~~~~~l~~y~lvv~P~~~ 462 (645)
T 1kwg_A 429 LFYSALRRLGLDVDVVPPGASLRGYAFAVVPSLP 462 (645)
T ss_dssp HHHHHHHTTTCCEEEECTTSCCTTCSEEEESCCS
T ss_pred HHHHHHHHhCCCeeEECCCCCcccCCEEEEechh
Confidence 3567899999999999988889999999999953
No 180
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=29.02 E-value=43 Score=23.51 Aligned_cols=71 Identities=7% Similarity=0.025 Sum_probs=40.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC------CC-CcCEEEEcCCch---hHHHHHHhhCCHHHHHHHHHH
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQ-NVSSLIIPGGES---TTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~-~~d~iil~GG~~---~~~~~l~~~~~~~~~i~~~~~ 69 (259)
|+|+|++...... .+.+.|+..|+++....+.++ -. .+|.+|+-=..+ +..+ +.+.|++. .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~-------~~~~l~~~-~ 77 (132)
T 2rdm_A 6 VTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ-------VARVAREI-D 77 (132)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHH-------HHHHHHHH-C
T ss_pred ceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHH-------HHHHHHhc-C
Confidence 4788886433333 355678889998887765321 12 689988732211 1111 23444443 2
Q ss_pred cCCcEEEEch
Q 024993 70 MGKPVWGTCA 79 (259)
Q Consensus 70 ~g~PiLGIC~ 79 (259)
...|++.+..
T Consensus 78 ~~~~ii~~s~ 87 (132)
T 2rdm_A 78 PNMPIVYISG 87 (132)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 3688887764
No 181
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=28.86 E-value=58 Score=28.31 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=23.9
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~ 31 (259)
|||+++...+. ...+.++|++.|.+|.++..
T Consensus 21 MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 21 MRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 89999975431 23567899999999999865
No 182
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=28.73 E-value=15 Score=27.36 Aligned_cols=43 Identities=16% Similarity=0.033 Sum_probs=28.6
Q ss_pred CEEEEEecCCC-hHHHHHHHHhCCCeEE-EeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGS-FNEHIAALKRLGVKGV-EIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~-~~~~~~~L~~~G~~v~-~~~~~~~----l--~~~d~iil 43 (259)
|||+|++-.-. ...+.+.|+..|++++ ...+.++ + ..+|.+++
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll 59 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII 59 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 78999975433 3456678999999875 3344321 1 47899988
No 183
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=28.19 E-value=51 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~ 29 (259)
|||+|+ |+ .+...-++.+|++..++
T Consensus 1 MKIaVI---GD-~Dtv~GFrLaGi~~~~v 25 (111)
T 2qai_A 1 MKIVVM---GD-SDTVVGFRLAGVHEAYE 25 (111)
T ss_dssp CEEEEE---EC-HHHHHHHHHHTCSEEEE
T ss_pred CEEEEE---EC-HHHHHHHHHcCCceEEE
Confidence 999999 44 56667788889987755
No 184
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=28.10 E-value=2.3e+02 Score=22.69 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=26.6
Q ss_pred EEEEEecC--CC-hHH----HHHHHHhCCCeEEEeCCCC---C-CC-CcCEEEEcCC
Q 024993 2 VVGVLALQ--GS-FNE----HIAALKRLGVKGVEIRKPD---Q-LQ-NVSSLIIPGG 46 (259)
Q Consensus 2 ki~vl~~~--G~-~~~----~~~~L~~~G~~v~~~~~~~---~-l~-~~d~iil~GG 46 (259)
+|+|+... .. +.. +.+++++.|+++.+..... . .. ++|+||+.+.
T Consensus 10 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~ 66 (277)
T 3cs3_A 10 IIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDW 66 (277)
T ss_dssp EEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECT
T ss_pred EEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecC
Confidence 57777422 22 233 3456677899888764321 1 11 7899998764
No 185
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=27.92 E-value=38 Score=24.23 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=27.8
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC------CCCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~iil 43 (259)
|+|+|++..-... .+.+.|+..|+++....+.++ -..+|.||+
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 57 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLL 57 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 5688886433333 455778888998877765421 135788887
No 186
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.83 E-value=2.4e+02 Score=22.69 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=40.5
Q ss_pred EEEEEecC--CC-hHH----HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHH
Q 024993 2 VVGVLALQ--GS-FNE----HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (259)
Q Consensus 2 ki~vl~~~--G~-~~~----~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~ 62 (259)
+|+|+.-. .. +.. +.+++++.|+++.+.....+ + ..+|+||+.+....... ...+
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~------~~~~ 90 (298)
T 3tb6_A 17 TIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQT------PNIG 90 (298)
T ss_dssp EEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC------TTHH
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccC------CcHH
Confidence 47777532 22 223 44677788999988753211 1 47999999774321100 0123
Q ss_pred HHHHHHHcCCcEEEEc
Q 024993 63 ALREFVKMGKPVWGTC 78 (259)
Q Consensus 63 ~i~~~~~~g~PiLGIC 78 (259)
.++++.+.++|+..+.
T Consensus 91 ~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 91 YYLNLEKNGIPFAMIN 106 (298)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHhcCCCEEEEe
Confidence 3445556789988765
No 187
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=27.72 E-value=59 Score=23.19 Aligned_cols=73 Identities=16% Similarity=0.030 Sum_probs=42.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC------CCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
|||+|++...... .+.+.|+..|+++....+.++ -..+|.||+-- .+.. +.+ .+.+.|++. ....|
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~~~-~g~----~~~~~l~~~-~~~~p 77 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGE-ESL----NLIRRIREE-FPDTK 77 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TTTH-HHH----HHHHHHHHH-CTTCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-CCCC-cHH----HHHHHHHHH-CCCCC
Confidence 4688886433333 355778888998887765321 13689998844 3221 111 123445443 23689
Q ss_pred EEEEchh
Q 024993 74 VWGTCAG 80 (259)
Q Consensus 74 iLGIC~G 80 (259)
++.++.-
T Consensus 78 ii~ls~~ 84 (142)
T 2qxy_A 78 VAVLSAY 84 (142)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 8888743
No 188
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=27.61 E-value=36 Score=28.11 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=31.9
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC------CC---------CCCCcCEEEEcCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------PD---------QLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~~---------~l~~~d~iil~GG 46 (259)
|+|+|..-...-..+.+.|++.|+++..++. ++ ++.++|.||++..
T Consensus 7 ~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~ 67 (254)
T 4es6_A 7 WRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSK 67 (254)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSH
T ss_pred CEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECH
Confidence 5787775433445678899999998876532 11 3467999999874
No 189
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=27.58 E-value=62 Score=27.23 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=31.3
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeCC-CC--------------CCCCcCEEEEcCC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK-PD--------------QLQNVSSLIIPGG 46 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~~-~~--------------~l~~~d~iil~GG 46 (259)
||+++ |.+..+.+.|++. .++.++.- ++ .++++|.++++|.
T Consensus 118 kV~vI---G~~p~l~~~l~~~-~~v~V~d~~p~~~~~~~~~~~~e~~~l~~~D~v~iTGs 173 (249)
T 3npg_A 118 RIAII---GNMPPVVRTLKEK-YEVYVFERNMKLWDRDTYSDTLEYHILPEVDGIIASAS 173 (249)
T ss_dssp EEEEE---SCCHHHHHHHTTT-SEEEEECCSGGGCCSSEECGGGHHHHGGGCSEEEEETT
T ss_pred EEEEE---CCCHHHHHHHhcc-CCEEEEECCCcccCCCCCChhHHHhhhccCCEEEEEee
Confidence 78888 7789999999888 88888742 21 1457899999886
No 190
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=27.43 E-value=63 Score=26.85 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=21.9
Q ss_pred CEEEEEecCC------Ch--HHHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQG------SF--NEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G------~~--~~~~~~L~~~G~~v~~~~ 30 (259)
|||+|+..+- .+ ..+.++++++|+++.++.
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d 39 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYME 39 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEc
Confidence 5999996431 12 357789999999988875
No 191
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=27.33 E-value=82 Score=22.87 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=41.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCC----CC--CCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l--~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
|+|+|++...... .+.+.|+..|+++....+.+ .+ ..+|.||+--..+ +..+ +.+.|++. ...
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~-------~~~~l~~~-~~~ 75 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLA-------LFRKILAL-DPD 75 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHH-------HHHHHHHH-CTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-------HHHHHHhh-CCC
Confidence 6888886543333 45578888999988776532 22 3689888833211 1111 23444443 247
Q ss_pred CcEEEEch
Q 024993 72 KPVWGTCA 79 (259)
Q Consensus 72 ~PiLGIC~ 79 (259)
.|++.+..
T Consensus 76 ~pii~ls~ 83 (155)
T 1qkk_A 76 LPMILVTG 83 (155)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEC
Confidence 89888864
No 192
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=27.18 E-value=1.3e+02 Score=27.21 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=23.2
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~ 30 (259)
+||.|+-..|+-.+ +.+.|.+.|++|...+
T Consensus 19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D 49 (475)
T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSD 49 (475)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEE
T ss_pred CEEEEEeecHHHHHHHHHHHHhCCCEEEEEC
Confidence 46888888777776 7788888888887753
No 193
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=27.15 E-value=55 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=23.7
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcC
Q 024993 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~G 45 (259)
|||+++. .+|++..+.+.++... ++|.+|+.|
T Consensus 4 mri~~isDiHg~~~~l~~~l~~~~-------------~~d~ii~~G 36 (246)
T 3rqz_A 4 MRILIISDVHANLVALEAVLSDAG-------------RVDDIWSLG 36 (246)
T ss_dssp CCEEEECCCTTCHHHHHHHHHHHC-------------SCSEEEECS
T ss_pred cEEEEEeecCCCHHHHHHHHHhcc-------------CCCEEEECC
Confidence 8999987 5789888777776553 357777777
No 194
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=27.05 E-value=2.5e+02 Score=23.77 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=42.1
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE-eC--CCC--C------------CCCcCEEEEcC---CchhHHHHHHhhCCH
Q 024993 2 VVGVLALQGSFN-EHIAALKRLGVKGVE-IR--KPD--Q------------LQNVSSLIIPG---GESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~G~~v~~-~~--~~~--~------------l~~~d~iil~G---G~~~~~~~l~~~~~~ 60 (259)
+|+++...|++. ++..++.+.|+-+.. ++ +.. + =++.+.|++-+ |.+.. . .
T Consensus 146 ~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~~~~~--~------~ 217 (288)
T 1oi7_A 146 RVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEE--E------A 217 (288)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHHH--H------H
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHH--H------H
Confidence 489999888887 466888887764433 22 211 1 13567777744 32221 1 1
Q ss_pred HHHHHHHHHcCCcEEEEchhHHH
Q 024993 61 FPALREFVKMGKPVWGTCAGLIF 83 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~Ql 83 (259)
.++++. ..+|||..++.|-.-
T Consensus 218 ~~~~~~--~~~KPVv~~k~G~~~ 238 (288)
T 1oi7_A 218 AAWVKD--HMKKPVVGFIGGRSA 238 (288)
T ss_dssp HHHHHH--HCCSCEEEEESCC--
T ss_pred HHHHHh--cCCCCEEEEEecCCC
Confidence 233433 479999999987554
No 195
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.98 E-value=86 Score=22.23 Aligned_cols=74 Identities=11% Similarity=0.060 Sum_probs=41.8
Q ss_pred CEEEEEecCCChH-HHHHHHHh-CCCeEEEeCCCC----CC---CCcCEEEEcCCch-hHHHHHHhhCCHHHHHHHH-HH
Q 024993 1 MVVGVLALQGSFN-EHIAALKR-LGVKGVEIRKPD----QL---QNVSSLIIPGGES-TTMARLAEYHNLFPALREF-VK 69 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~-~G~~v~~~~~~~----~l---~~~d~iil~GG~~-~~~~~l~~~~~~~~~i~~~-~~ 69 (259)
|||+|++..-... .+.+.|+. .|+++....+.+ .+ ..+|.||+-=..+ .. +.+ .+.+.|++. ..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~-~g~----~~~~~l~~~~~~ 79 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEK-EGL----EVLSAIRNNSRT 79 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHH-HHH----HHHHHHHHSGGG
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCC-cHH----HHHHHHHhCccc
Confidence 4788886433333 35567888 899988776532 22 4589988833222 11 111 123445441 12
Q ss_pred cCCcEEEEch
Q 024993 70 MGKPVWGTCA 79 (259)
Q Consensus 70 ~g~PiLGIC~ 79 (259)
...|++.+..
T Consensus 80 ~~~~ii~ls~ 89 (140)
T 3lua_A 80 ANTPVIIATK 89 (140)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 4789888774
No 196
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.76 E-value=39 Score=22.84 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=29.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEcC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~G 45 (259)
|+|+|++..-... .+.+.|+..|+++....+.++ + ..+|.+|+--
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~ 53 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAW 53 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEec
Confidence 6788886433333 456788889998887765432 1 2589888743
No 197
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=26.75 E-value=2.2e+02 Score=23.11 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=39.2
Q ss_pred EEEEEecCC-C-h-HH----HHHHHHhCCCeEEEeCCCC---------CC--CCcCEEEEcCCchhHHHHHHhhCCHHHH
Q 024993 2 VVGVLALQG-S-F-NE----HIAALKRLGVKGVEIRKPD---------QL--QNVSSLIIPGGESTTMARLAEYHNLFPA 63 (259)
Q Consensus 2 ki~vl~~~G-~-~-~~----~~~~L~~~G~~v~~~~~~~---------~l--~~~d~iil~GG~~~~~~~l~~~~~~~~~ 63 (259)
+|+|+.-.- + | .. +.+++++.|+++.+....+ .+ .++|+||+.+...... ...
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~---------~~~ 74 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG---------SAI 74 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGH---------HHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhh---------HHH
Confidence 677775322 2 2 22 4456677899888764321 11 4789999977432221 123
Q ss_pred HHHHHHcCCcEEEEc
Q 024993 64 LREFVKMGKPVWGTC 78 (259)
Q Consensus 64 i~~~~~~g~PiLGIC 78 (259)
++++.+.++|+..+-
T Consensus 75 ~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 75 VAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHTTCEEEEES
T ss_pred HHHHHHCCCcEEEeC
Confidence 444556789987664
No 198
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=26.63 E-value=79 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=22.4
Q ss_pred CEEEEEecC---CChH-----HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQ---GSFN-----EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~---G~~~-----~~~~~L~~~G~~v~~~~~ 31 (259)
|||+||..+ .++. ...+.|++.|.+|+++..
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 999999753 3444 245677889999998753
No 199
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=26.40 E-value=1.7e+02 Score=20.60 Aligned_cols=72 Identities=8% Similarity=-0.054 Sum_probs=39.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C---CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L---QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l---~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|||+|++..-... .+.+.|+..|+++....+..+ + ..+|.||+-=..+...+.+ .+.+.|++. ...
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~----~~~~~l~~~--~~~ 79 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV----QTALAIQQI--SEL 79 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH----HHHHHHHHH--CCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH----HHHHHHHhC--CCC
Confidence 5788886433333 455788889999887765321 1 3689988822111000001 123445543 578
Q ss_pred cEEEEc
Q 024993 73 PVWGTC 78 (259)
Q Consensus 73 PiLGIC 78 (259)
|++.+.
T Consensus 80 ~ii~ls 85 (140)
T 3h5i_A 80 PVVFLT 85 (140)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 887765
No 200
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.24 E-value=37 Score=24.92 Aligned_cols=71 Identities=13% Similarity=-0.033 Sum_probs=40.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
++|+|++...... .+.+.|+..|+++....+.++ + ..+|.||+-=..+ +..+ +.+.|++. ...
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~-------~~~~l~~~-~~~ 86 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPT-------LLARIHQQ-YPS 86 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHH-------HHHHHHHH-CTT
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHH-------HHHHHHhH-CCC
Confidence 4788886543333 355778888998887765432 1 3689988832111 1111 23344442 246
Q ss_pred CcEEEEch
Q 024993 72 KPVWGTCA 79 (259)
Q Consensus 72 ~PiLGIC~ 79 (259)
.|++.+..
T Consensus 87 ~~ii~~s~ 94 (153)
T 3hv2_A 87 TTRILLTG 94 (153)
T ss_dssp SEEEEECC
T ss_pred CeEEEEEC
Confidence 88887764
No 201
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=26.14 E-value=69 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=23.3
Q ss_pred CEEEEEecCCC-----hHHHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~-----~~~~~~~L~~~G~~v~~~~~ 31 (259)
|||+++...+. ...+.++|+++|.+|.++..
T Consensus 16 MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~ 51 (398)
T 4fzr_A 16 MRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAAS 51 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcC
Confidence 99999965321 22567899999999998754
No 202
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=26.09 E-value=82 Score=22.83 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=41.7
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC------CCCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~------l~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
|||+|++...... .+.+.|+..|+++....+..+ -..+|.||+--..+ +..+ +.+.|++. ...
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~-------~~~~l~~~-~~~ 79 (154)
T 2rjn_A 8 YTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEV-------FLEQVAKS-YPD 79 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHH-------HHHHHHHH-CTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHH-------HHHHHHHh-CCC
Confidence 5788886443333 355678889998887765421 13589988832211 1111 23344442 246
Q ss_pred CcEEEEchhH
Q 024993 72 KPVWGTCAGL 81 (259)
Q Consensus 72 ~PiLGIC~G~ 81 (259)
.|++.++.-.
T Consensus 80 ~~ii~ls~~~ 89 (154)
T 2rjn_A 80 IERVVISGYA 89 (154)
T ss_dssp SEEEEEECGG
T ss_pred CcEEEEecCC
Confidence 8988887543
No 203
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=25.95 E-value=30 Score=23.99 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=28.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|++...... .+.+.|+..|+++....+.++ + ..+|.+|+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~ 55 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVL 55 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEE
Confidence 3788886433333 455778888998887765422 1 25898887
No 204
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=25.81 E-value=77 Score=27.25 Aligned_cols=30 Identities=23% Similarity=0.037 Sum_probs=23.3
Q ss_pred CEEEEEecCCChH------HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN------EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~------~~~~~L~~~G~~v~~~~~ 31 (259)
|||+++... ... .+.++|++.|.+|.++..
T Consensus 2 MrIl~~~~~-~~gh~~~~~~la~~L~~~GheV~v~~~ 37 (391)
T 3tsa_A 2 MRVLVVPLP-YPTHLMAMVPLCWALQASGHEVLIAAP 37 (391)
T ss_dssp CEEEEECCS-CHHHHHTTHHHHHHHHHTTCEEEEEEC
T ss_pred cEEEEEcCC-CcchhhhHHHHHHHHHHCCCEEEEecC
Confidence 999999754 322 467889999999998764
No 205
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=25.75 E-value=1e+02 Score=25.04 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=30.3
Q ss_pred EEEEEecCCChH--HHHHHHHhCCCeEEEeCCCCC----------CCCcCEEEEcC
Q 024993 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRKPDQ----------LQNVSSLIIPG 45 (259)
Q Consensus 2 ki~vl~~~G~~~--~~~~~L~~~G~~v~~~~~~~~----------l~~~d~iil~G 45 (259)
.|+|+....+.. .+.++++++|+++..+...+. +.++|.++++.
T Consensus 1 mI~il~~~~~~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 56 (280)
T 1uc8_A 1 MLAILYDRIRPDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERC 56 (280)
T ss_dssp CEEEEESSCCHHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECC
T ss_pred CEEEEecCCCHHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECC
Confidence 178887655554 577899999999988753211 34688777765
No 206
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=25.54 E-value=35 Score=25.28 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=40.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEE-EeCCCCC----C--C--CcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHH
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGV-EIRKPDQ----L--Q--NVSSLIIPGGES--TTMARLAEYHNLFPALREFV 68 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~-~~~~~~~----l--~--~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~ 68 (259)
|||+|++..-... .+.+.|+..|+++. ...+.++ + . .+|.||+-=..+ +..+ +.+.|++..
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~-------~~~~lr~~~ 109 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGIT-------CLSNIMEFD 109 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHH-------HHHHHHHHC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHH-------HHHHHHhhC
Confidence 5788886433333 35578888999887 5655421 1 2 679888832211 1111 234444432
Q ss_pred HcCCcEEEEchh
Q 024993 69 KMGKPVWGTCAG 80 (259)
Q Consensus 69 ~~g~PiLGIC~G 80 (259)
...|++.++.-
T Consensus 110 -~~~~ii~ls~~ 120 (157)
T 3hzh_A 110 -KNARVIMISAL 120 (157)
T ss_dssp -TTCCEEEEESC
T ss_pred -CCCcEEEEecc
Confidence 46888877743
No 207
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=25.45 E-value=1.4e+02 Score=25.98 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=17.4
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~ 29 (259)
|||+|+-. |.... +.+.|.+ ..++.+.
T Consensus 17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~ 44 (365)
T 3abi_A 17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIG 44 (365)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TSEEEEE
T ss_pred cEEEEECC-CHHHHHHHHHHhc-CCCeEEE
Confidence 99999965 66555 3456643 4566654
No 208
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=25.43 E-value=40 Score=28.26 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=32.5
Q ss_pred CEEEEEecCCChHHHHHHHHhCCCeEEEeCC------CC---------CCCCcCEEEEcCC
Q 024993 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------PD---------QLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~G~~~~~~~~L~~~G~~v~~~~~------~~---------~l~~~d~iil~GG 46 (259)
|+|+|..-...-..+.+.|++.|+++..++. ++ ++.++|.||++..
T Consensus 15 ~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~ 75 (269)
T 3re1_A 15 WRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSK 75 (269)
T ss_dssp CEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSH
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECH
Confidence 5677776544455688899999998877532 11 3567999999874
No 209
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.95 E-value=51 Score=23.19 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=26.7
Q ss_pred CEEEEEecCCChHHHH-HHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFNEHI-AALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~~~~-~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|++......... ..|+ .|+++....+.++ + ..+|.||+
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~ 53 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLIS 53 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEE
Confidence 5788887543344444 4555 8888887766432 1 36898888
No 210
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=24.88 E-value=1.8e+02 Score=26.39 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=9.9
Q ss_pred CCCCcCEEEEcCCc
Q 024993 34 QLQNVSSLIIPGGE 47 (259)
Q Consensus 34 ~l~~~d~iil~GG~ 47 (259)
.+.++|.||.+-|.
T Consensus 68 ~~~~~d~vV~spgi 81 (469)
T 1j6u_A 68 NWYDPDLVIKTPAV 81 (469)
T ss_dssp SCCCCSEEEECTTC
T ss_pred HCCCCCEEEECCCc
Confidence 44578999986663
No 211
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.79 E-value=31 Score=24.58 Aligned_cols=75 Identities=13% Similarity=-0.002 Sum_probs=41.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEcCCch----hHHHHHHhhCCHHHHHHHHHH
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES----TTMARLAEYHNLFPALREFVK 69 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~GG~~----~~~~~l~~~~~~~~~i~~~~~ 69 (259)
|||+|++...... .+.+.|+..|+++....+.++ + ..+|.||+--..+ ...+.+ .+.+.|++. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~----~~~~~l~~~-~ 78 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGL----FWLHEIKRQ-Y 78 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHH----HHHHHHHHH-C
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH----HHHHHHHhh-C
Confidence 4788886543333 355678888998887765422 1 3588888832211 011111 123444443 2
Q ss_pred cCCcEEEEchh
Q 024993 70 MGKPVWGTCAG 80 (259)
Q Consensus 70 ~g~PiLGIC~G 80 (259)
...|++.+..-
T Consensus 79 ~~~~ii~ls~~ 89 (140)
T 2qr3_A 79 RDLPVVLFTAY 89 (140)
T ss_dssp TTCCEEEEEEG
T ss_pred cCCCEEEEECC
Confidence 46888888743
No 212
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=24.70 E-value=1.6e+02 Score=25.37 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=42.0
Q ss_pred EEEEEecCCChH-HHHHHHHhCCCeEEE-eC--CCC--CC------------CCcCEEEEcC---CchhHHHHHHhhCCH
Q 024993 2 VVGVLALQGSFN-EHIAALKRLGVKGVE-IR--KPD--QL------------QNVSSLIIPG---GESTTMARLAEYHNL 60 (259)
Q Consensus 2 ki~vl~~~G~~~-~~~~~L~~~G~~v~~-~~--~~~--~l------------~~~d~iil~G---G~~~~~~~l~~~~~~ 60 (259)
+|+|+...|++. ++..++.+.|+-+.. ++ +.. ++ ++.+.|++-+ |.+.. +-+ .+
T Consensus 154 ~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~--~~~---~f 228 (305)
T 2fp4_A 154 RIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEE--NAA---EF 228 (305)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHH--HHH---HH
T ss_pred CEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhh--HHH---HH
Confidence 489999889887 466888887764433 22 211 11 3567777743 44321 110 11
Q ss_pred HHHHHHHHHcCCcEEEEchhHH
Q 024993 61 FPALREFVKMGKPVWGTCAGLI 82 (259)
Q Consensus 61 ~~~i~~~~~~g~PiLGIC~G~Q 82 (259)
.+..++ ..++|||..++.|-.
T Consensus 229 ~~~~~~-~~~~KPVv~~k~G~s 249 (305)
T 2fp4_A 229 LKQHNS-GPKSKPVVSFIAGLT 249 (305)
T ss_dssp HHHHSC-STTCCCEEEEEECTT
T ss_pred HHHHHH-hcCCCCEEEEEecCC
Confidence 222222 235899999997643
No 213
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=24.41 E-value=85 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=19.0
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCC
Q 024993 1 MVVGVLA-LQGSFNEHIAALKRLGV 24 (259)
Q Consensus 1 mki~vl~-~~G~~~~~~~~L~~~G~ 24 (259)
|||+|+. .+|++..+.+.|+..+.
T Consensus 1 M~i~vigDiHG~~~~l~~ll~~~~~ 25 (280)
T 2dfj_A 1 MATYLIGDVHGCYDELIALLHKVEF 25 (280)
T ss_dssp -CEEEECCCCSCHHHHHHHHHHTTC
T ss_pred CeEEEEecCCCCHHHHHHHHHHhCC
Confidence 8988886 58999998888988764
No 214
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=24.16 E-value=1.7e+02 Score=22.85 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=38.8
Q ss_pred CEEEEEecCCC--hH-----HHHHHHHhCCC--eEEEeCCCC---------C---CCCcCEEEEcC----CchhHHHHHH
Q 024993 1 MVVGVLALQGS--FN-----EHIAALKRLGV--KGVEIRKPD---------Q---LQNVSSLIIPG----GESTTMARLA 55 (259)
Q Consensus 1 mki~vl~~~G~--~~-----~~~~~L~~~G~--~v~~~~~~~---------~---l~~~d~iil~G----G~~~~~~~l~ 55 (259)
+||+|+..+=| .. ...+.|++.|+ .+.+++.|- . -.+||++|..| |.-+..+...
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va 93 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVV 93 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHH
Confidence 47888874311 11 13466778886 344444331 1 14799998877 3222223332
Q ss_pred hhCCHHHHHHHHHHcCCcEE-EE
Q 024993 56 EYHNLFPALREFVKMGKPVW-GT 77 (259)
Q Consensus 56 ~~~~~~~~i~~~~~~g~PiL-GI 77 (259)
.+ -....++-.++.++||. ||
T Consensus 94 ~~-v~~gl~~v~L~~~vPV~~GV 115 (156)
T 1c2y_A 94 NS-ASSGVLSAGLNSGVPCVFGV 115 (156)
T ss_dssp HH-HHHHHHHHHHHHTSCEEEEE
T ss_pred HH-HHHHHHHHHhhcCCCEEEEE
Confidence 21 11234444456789953 44
No 215
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=24.13 E-value=71 Score=25.44 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=24.0
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|=.-+..+. .+.++|++.|++|+-+..
T Consensus 21 MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~ 54 (169)
T 3ph3_A 21 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGT 54 (169)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCC
Confidence 8999987666544 567899999998887643
No 216
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.08 E-value=31 Score=25.90 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=39.0
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCe-EEEeCCCCC----C--CCcCEEEE----cCCchhHHHHHHhhCCHHHHHHHHH
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVK-GVEIRKPDQ----L--QNVSSLII----PGGESTTMARLAEYHNLFPALREFV 68 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~-v~~~~~~~~----l--~~~d~iil----~GG~~~~~~~l~~~~~~~~~i~~~~ 68 (259)
|||+|++-.-.... +.+.|+..|++ +....+..+ + ..+|.|++ ||-... + +.+.||+.-
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~--e-------l~~~ir~~~ 83 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGI--D-------LLKNIRADE 83 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHH--H-------HHHHHHHST
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHH--H-------HHHHHHhCC
Confidence 68999964323333 45788999986 444554321 1 36899887 542211 1 123344311
Q ss_pred -HcCCcEEEEch
Q 024993 69 -KMGKPVWGTCA 79 (259)
Q Consensus 69 -~~g~PiLGIC~ 79 (259)
....||+.+..
T Consensus 84 ~~~~ipvI~lTa 95 (134)
T 3to5_A 84 ELKHLPVLMITA 95 (134)
T ss_dssp TTTTCCEEEEES
T ss_pred CCCCCeEEEEEC
Confidence 14689888764
No 217
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=23.83 E-value=67 Score=27.51 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=28.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCCeEEEeC-CCC-----------CCCCcCEEEEcCC
Q 024993 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR-KPD-----------QLQNVSSLIIPGG 46 (259)
Q Consensus 2 ki~vl~~~G~~~~~~~~L~~~G~~v~~~~-~~~-----------~l~~~d~iil~GG 46 (259)
||+|+ |.+ ..++.+++.+.++.++. ++. -++++|.+|++|.
T Consensus 143 kV~vI---G~f-P~i~~~~~~~~~l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgs 195 (270)
T 3l5o_A 143 KVGVV---GHF-PHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCA 195 (270)
T ss_dssp EEEEE---SCC-TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETH
T ss_pred EEEEE---CCc-hhHHHHHhcCCCEEEEECCCCCCCCChhHHHHhhccCCEEEEEee
Confidence 78888 557 44566777788888873 221 2468999999995
No 218
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=23.76 E-value=71 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=17.7
Q ss_pred CEEEEEecC--CChHHHHHHH-HhCCCeEEEe
Q 024993 1 MVVGVLALQ--GSFNEHIAAL-KRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~--G~~~~~~~~L-~~~G~~v~~~ 29 (259)
||++|+-+. |+=..+.+.+ +..+.++.-+
T Consensus 14 mkilIvY~S~tGnT~~vA~~Ia~~l~~d~~~I 45 (171)
T 4ici_A 14 SKILVAYFSATGTTARAAEKLGAAVGGDLYPI 45 (171)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCeEEE
Confidence 789999764 4444555655 3457766543
No 219
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=23.72 E-value=2.4e+02 Score=24.24 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=18.2
Q ss_pred CEEEEEecCCChHH--HHHHHHhC-CCeEEEe
Q 024993 1 MVVGVLALQGSFNE--HIAALKRL-GVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~-G~~v~~~ 29 (259)
|||+|+-. |.... ..+.|... +++++.+
T Consensus 28 ~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av 58 (350)
T 3rc1_A 28 IRVGVIGC-ADIAWRRALPALEAEPLTEVTAI 58 (350)
T ss_dssp EEEEEESC-CHHHHHTHHHHHHHCTTEEEEEE
T ss_pred eEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEE
Confidence 47999964 65553 56777766 6676643
No 220
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=23.63 E-value=2.6e+02 Score=21.67 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=37.4
Q ss_pred CEEEEEecCCC--hH-----HHHHHHHhCCC---eEEEeCCCC------------CCCCcCEEEEcC----CchhHHHHH
Q 024993 1 MVVGVLALQGS--FN-----EHIAALKRLGV---KGVEIRKPD------------QLQNVSSLIIPG----GESTTMARL 54 (259)
Q Consensus 1 mki~vl~~~G~--~~-----~~~~~L~~~G~---~v~~~~~~~------------~l~~~d~iil~G----G~~~~~~~l 54 (259)
+||+|+..+=| .. ...+.|++.|+ ++.+++.|- .-.+||++|.-| |.....+..
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd~V 92 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYI 92 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHHHH
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHH
Confidence 47888874311 11 13466778886 345544331 124799988766 322222332
Q ss_pred HhhCCHHHHHHHHHHcCCcEE
Q 024993 55 AEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 55 ~~~~~~~~~i~~~~~~g~PiL 75 (259)
..+ -....++-.++.++||.
T Consensus 93 a~~-vs~gl~~v~l~~~vPV~ 112 (154)
T 1hqk_A 93 ASE-VSKGLANLSLELRKPIT 112 (154)
T ss_dssp HHH-HHHHHHHHHHHHTSCEE
T ss_pred HHH-HHHHHHHHHhhcCCCEE
Confidence 221 11234444556789954
No 221
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=23.46 E-value=1.6e+02 Score=25.18 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=27.3
Q ss_pred CEEEEEecCCChHH--HHHHHHhC-CCeEEEeCCC-------------CC-C---CCcCEEEEcCC
Q 024993 1 MVVGVLALQGSFNE--HIAALKRL-GVKGVEIRKP-------------DQ-L---QNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~-G~~v~~~~~~-------------~~-l---~~~d~iil~GG 46 (259)
|||+|+-. |.... ..++|+.. +++++-+.+. ++ + ++.|+|+++-.
T Consensus 26 ~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 47999965 65543 56777665 6666654221 11 1 35899988765
No 222
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=23.45 E-value=63 Score=29.21 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=22.9
Q ss_pred HHHHHHhCCCeEEEe---CCC-CC--------CCCcCEEEEcCCch
Q 024993 15 HIAALKRLGVKGVEI---RKP-DQ--------LQNVSSLIIPGGES 48 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~---~~~-~~--------l~~~d~iil~GG~~ 48 (259)
+...|++.|+++..+ .+. +. ++++|.||.+||.+
T Consensus 212 L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 257 (402)
T 1uz5_A 212 LCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS 257 (402)
T ss_dssp HHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred HHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 457788899987653 332 11 23689999999865
No 223
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=23.43 E-value=2.2e+02 Score=24.21 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=18.2
Q ss_pred CEEEEEecCCChHH--HHHHHHhC-CCeEEEe
Q 024993 1 MVVGVLALQGSFNE--HIAALKRL-GVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~~-G~~v~~~ 29 (259)
|||+||-. |.... ...+++.. +++++-+
T Consensus 24 irigiIG~-G~ig~~~~~~~~~~~~~~~lvav 54 (350)
T 4had_A 24 LRFGIIST-AKIGRDNVVPAIQDAENCVVTAI 54 (350)
T ss_dssp EEEEEESC-CHHHHHTHHHHHHHCSSEEEEEE
T ss_pred cEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEE
Confidence 58999964 65543 45677765 6676644
No 224
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=23.30 E-value=26 Score=25.38 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=29.2
Q ss_pred CEEEEEecCCCh-HHHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEc
Q 024993 1 MVVGVLALQGSF-NEHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIP 44 (259)
Q Consensus 1 mki~vl~~~G~~-~~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~ 44 (259)
|||+|++..-.. ..+.+.|+..|+++....+.++ + ..+|.||+-
T Consensus 9 ~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d 59 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITE 59 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEc
Confidence 468888754333 3466788888988887765432 1 268998883
No 225
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=23.27 E-value=40 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=28.3
Q ss_pred CEEEEEecCC-----C----h-HHHHHHHHhCCCe--EEE---eCCC-CC--------CC--CcCEEEEcCCc
Q 024993 1 MVVGVLALQG-----S----F-NEHIAALKRLGVK--GVE---IRKP-DQ--------LQ--NVSSLIIPGGE 47 (259)
Q Consensus 1 mki~vl~~~G-----~----~-~~~~~~L~~~G~~--v~~---~~~~-~~--------l~--~~d~iil~GG~ 47 (259)
|||+||...+ . . ..+.++|++.|++ +.. +.+. +. ++ ++|.||.+||.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5788887422 1 1 2355788888876 322 3332 11 22 68999999975
No 226
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.20 E-value=31 Score=24.62 Aligned_cols=73 Identities=5% Similarity=-0.081 Sum_probs=40.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCc
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~P 73 (259)
|||+|++..-... .+.+.|+..|..+....+.++ + ..+|.||+--..+.. +.+ .+.+.|++. ....|
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~-~g~----~~~~~l~~~-~~~~~ 81 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKL-GGL----EMLDRIKAG-GAKPY 81 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSS-CHH----HHHHHHHHT-TCCCE
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCC-CHH----HHHHHHHhc-CCCCc
Confidence 5788886543333 355778888888887766432 1 368988884322111 001 122334432 14678
Q ss_pred EEEEch
Q 024993 74 VWGTCA 79 (259)
Q Consensus 74 iLGIC~ 79 (259)
++.+..
T Consensus 82 ii~~s~ 87 (137)
T 3hdg_A 82 VIVISA 87 (137)
T ss_dssp EEECCC
T ss_pred EEEEec
Confidence 777664
No 227
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=22.87 E-value=1.1e+02 Score=23.74 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=29.4
Q ss_pred CEEEEEecC-----CCh-----HHHHHHHHhC-----CCeEEE---eCCC-C-------C-C--CCcCEEEEcCCch
Q 024993 1 MVVGVLALQ-----GSF-----NEHIAALKRL-----GVKGVE---IRKP-D-------Q-L--QNVSSLIIPGGES 48 (259)
Q Consensus 1 mki~vl~~~-----G~~-----~~~~~~L~~~-----G~~v~~---~~~~-~-------~-l--~~~d~iil~GG~~ 48 (259)
|||+||... |.. ..+.+.|+.. |+++.. +.+. + + + .++|.||.+||.+
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 578998742 111 1234677777 887764 3332 1 1 1 3699999999854
No 228
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=22.62 E-value=34 Score=27.08 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=18.2
Q ss_pred CEEEEEecC---CChH-HH----HHH-HHhCCCeEEEeC
Q 024993 1 MVVGVLALQ---GSFN-EH----IAA-LKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~---G~~~-~~----~~~-L~~~G~~v~~~~ 30 (259)
|||+|+... ++.. .+ .+. +++.|++++++.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~d 41 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIH 41 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEE
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 489998743 2333 22 344 566688888765
No 229
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.61 E-value=60 Score=22.77 Aligned_cols=75 Identities=9% Similarity=-0.023 Sum_probs=40.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCC--eEEEeCCCCC------C-------CCcCEEEEcCCchhHHHHHHhhCCHHHHH
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGV--KGVEIRKPDQ------L-------QNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~--~v~~~~~~~~------l-------~~~d~iil~GG~~~~~~~l~~~~~~~~~i 64 (259)
|||+|++..-... .+.+.|+..|. .+....+.++ - ..+|.+|+--..+.. +.+ .+.+.|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~-~g~----~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKK-DGR----EVLAEI 77 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSS-CHH----HHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcc-cHH----HHHHHH
Confidence 6899986433333 45678888888 6776665321 1 368998883322110 001 123344
Q ss_pred HHHHH-cCCcEEEEchh
Q 024993 65 REFVK-MGKPVWGTCAG 80 (259)
Q Consensus 65 ~~~~~-~g~PiLGIC~G 80 (259)
++... ...|++.+..-
T Consensus 78 ~~~~~~~~~pii~ls~~ 94 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTS 94 (140)
T ss_dssp HHSTTGGGSCEEEEESC
T ss_pred HcCcccccccEEEEecC
Confidence 43211 36888887643
No 230
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.60 E-value=2.5e+02 Score=22.90 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=38.0
Q ss_pred CEEEEEecC-CC-hH-H----HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHH
Q 024993 1 MVVGVLALQ-GS-FN-E----HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLF 61 (259)
Q Consensus 1 mki~vl~~~-G~-~~-~----~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~ 61 (259)
.+|+|+... ++ |. . +.+++++.|+++.+.....+ + .++|+||+.+...... .
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~---------~ 73 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGW---------E 73 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSC---------H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhH---------H
Confidence 368888642 22 22 2 34567778999887643211 1 3789999976432111 1
Q ss_pred HHHHHHHHcCCcEEEEc
Q 024993 62 PALREFVKMGKPVWGTC 78 (259)
Q Consensus 62 ~~i~~~~~~g~PiLGIC 78 (259)
+.++.+.+.++|+..+.
T Consensus 74 ~~~~~~~~~~iPvV~~~ 90 (306)
T 2vk2_A 74 PVLKEAKDAEIPVFLLD 90 (306)
T ss_dssp HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHCCCCEEEec
Confidence 22333334688876653
No 231
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=22.59 E-value=2.4e+02 Score=22.03 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=37.5
Q ss_pred CEEEEEecCCCh--H-----HHHHHHHh-CCC---eEEEeCCCC---------CC---CCcCEEEEcC----CchhHHHH
Q 024993 1 MVVGVLALQGSF--N-----EHIAALKR-LGV---KGVEIRKPD---------QL---QNVSSLIIPG----GESTTMAR 53 (259)
Q Consensus 1 mki~vl~~~G~~--~-----~~~~~L~~-~G~---~v~~~~~~~---------~l---~~~d~iil~G----G~~~~~~~ 53 (259)
+||+|+..+=|- . ...+.|++ .|+ ++++++.|- .+ .+||+||.-| |.-...+.
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~ 97 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEY 97 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSSSHHHH
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHH
Confidence 478888743221 1 13456777 786 356665442 11 3799987766 32222233
Q ss_pred HHhhCCHHHHHHHHHHcCCcE
Q 024993 54 LAEYHNLFPALREFVKMGKPV 74 (259)
Q Consensus 54 l~~~~~~~~~i~~~~~~g~Pi 74 (259)
+..+ -....++-.++.++||
T Consensus 98 Va~~-v~~Gl~~v~L~~~vPV 117 (159)
T 1kz1_A 98 ISEA-VVHGLMRVGLDSGVPV 117 (159)
T ss_dssp HHHH-HHHHHHHHHHHHCCCE
T ss_pred HHHH-HHHHHHHHHhhcCCCE
Confidence 2221 1123444445678985
No 232
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=22.29 E-value=82 Score=24.48 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=24.0
Q ss_pred CEEEEEecCCChH---HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~---~~~~~L~~~G~~v~~~~~ 31 (259)
|||+|=.-+..|. .+.++|++.|++|+-+..
T Consensus 1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~ 34 (149)
T 3he8_A 1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGT 34 (149)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CEEEEEECchhHHHHHHHHHHHHHCCCEEEEcCC
Confidence 9999987666544 467899999998887643
No 233
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=22.01 E-value=67 Score=22.82 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=40.4
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCC----CC--CCcCEEEEcCCchhH-HHHHHhhCCHHHHHHHHHHcCC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~----~l--~~~d~iil~GG~~~~-~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|||+|++....... +.+.|+..|+++....+.+ .+ ..+|.||+-=..+.. .+.+ ++.+.|++. ....
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~----~~~~~l~~~-~~~~ 81 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGI----ELLETLVKR-GFHL 81 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHH----HHHHHHHHT-TCCC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHH----HHHHHHHhC-CCCC
Confidence 47888864333333 4567888899888776532 22 357888873222210 1111 123444442 2468
Q ss_pred cEEEEch
Q 024993 73 PVWGTCA 79 (259)
Q Consensus 73 PiLGIC~ 79 (259)
|++.+..
T Consensus 82 ~ii~~s~ 88 (136)
T 3kto_A 82 PTIVMAS 88 (136)
T ss_dssp CEEEEES
T ss_pred CEEEEEc
Confidence 8887764
No 234
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=21.61 E-value=89 Score=24.23 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=22.2
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~ 29 (259)
|||+|.-..|... .+.+.|.+.|.+|..+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAI 30 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Confidence 9999886555555 4678888899988775
No 235
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.20 E-value=64 Score=22.83 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=28.6
Q ss_pred CEEEEEecCCChH-HHHHHHHh-CCCe-EEEeCCCCC----C--CCcCEEEEcC
Q 024993 1 MVVGVLALQGSFN-EHIAALKR-LGVK-GVEIRKPDQ----L--QNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~-~G~~-v~~~~~~~~----l--~~~d~iil~G 45 (259)
|+|+|++..-... .+.+.|+. .|++ +....+.++ + ..+|.||+--
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~ 62 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDL 62 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEET
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEec
Confidence 5688886433333 35577888 8998 766665422 1 3689988843
No 236
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.11 E-value=63 Score=22.93 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=28.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCC----CC---CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL---QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~----~l---~~~d~iil 43 (259)
++|+|++...... .+.+.|+..|+.+....+.. .+ ..+|.+|+
T Consensus 16 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvil 66 (138)
T 2b4a_A 16 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIV 66 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEE
Confidence 5788886543333 35567888899887766532 12 35898887
No 237
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=21.08 E-value=72 Score=22.75 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=27.6
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
+|+|++..-.... +.+.|+..|+++....+.++ + ..+|.||+
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 54 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALIC 54 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 5888864333333 45678889998887765432 1 36898887
No 238
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=20.95 E-value=1.3e+02 Score=25.19 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCeEEEeCCC
Q 024993 14 EHIAALKRLGVKGVEIRKP 32 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~~~~ 32 (259)
.+.++|.+.|++|.++...
T Consensus 38 ~l~~~L~~~G~~v~v~~~~ 56 (342)
T 2iuy_A 38 NLMDGLLELGHEVFLLGAP 56 (342)
T ss_dssp HHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHcCCeEEEEecC
Confidence 4668888999999998654
No 239
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.87 E-value=3.2e+02 Score=21.77 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEEEEc
Q 024993 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiLGIC 78 (259)
+.+++++.|+++.+.....+ + .++|+||+.+... . +.++.+.+.++|+.-+.
T Consensus 29 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~-----------~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 29 ISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-P-----------QTVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-H-----------HHHHHHHTTSSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-H-----------HHHHHHHHCCCCEEEEe
Confidence 44567788999888653311 1 4799999977533 1 12233334688887664
No 240
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=20.87 E-value=1.3e+02 Score=27.21 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=35.5
Q ss_pred HHHHHHh-CC--CeEEEeC---CCC--CCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCCcEE
Q 024993 15 HIAALKR-LG--VKGVEIR---KPD--QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (259)
Q Consensus 15 ~~~~L~~-~G--~~v~~~~---~~~--~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~PiL 75 (259)
+-++|++ .| .+++..+ -|+ ++.+||.||=+||-.-.-. .+...|+.+.++|+|+-
T Consensus 341 ~p~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~l~i~cg~cm~~~~------~~~~r~~~~~~~~~p~~ 403 (423)
T 3qq5_A 341 IPRWLVNHTGAQLNFKVIAGKDFPDLEEIENAKLIIHCGGCILNRS------AMMRRVRMAKRLGIPMT 403 (423)
T ss_dssp HHHHHHHHSCSCCEEEEECSSSCCCHHHHSSCSEEEECTTTCCCHH------HHHHHHHHHHHTTCCEE
T ss_pred hhHHHHHHhCCCcEEEEecCCCCCCccCcccCcEEEECcchhcCHH------HHHHHHHHHHHcCCCee
Confidence 4467764 34 4555553 356 7899999999998421111 13456777788999963
No 241
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=20.82 E-value=1.7e+02 Score=25.75 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=31.1
Q ss_pred CEEEEEecCCChH---------------HHHHHHHhCCCeEEEeCCCC--------CCCCcCEEEEcC
Q 024993 1 MVVGVLALQGSFN---------------EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPG 45 (259)
Q Consensus 1 mki~vl~~~G~~~---------------~~~~~L~~~G~~v~~~~~~~--------~l~~~d~iil~G 45 (259)
|||+.+-+.|.-. .+.++|++.|+++++..... .+.++|++|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lg~~~~~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~ 70 (351)
T 3jtm_A 3 KKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTP 70 (351)
T ss_dssp CEEEEECCCCTHHHHHCTTCCSSTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECT
T ss_pred ceEEEEEeccccccccCCCEEEeccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEcc
Confidence 7877666655432 35788999999998875421 256889888743
No 242
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=20.80 E-value=3.4e+02 Score=22.07 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=37.7
Q ss_pred EEEEecCCChH-HHHHHHHhCCCeEEEeCC-C--------CCCCCcCEEEEcCCchhHHHHHHhhCCHHHHHHHHHHcCC
Q 024993 3 VGVLALQGSFN-EHIAALKRLGVKGVEIRK-P--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (259)
Q Consensus 3 i~vl~~~G~~~-~~~~~L~~~G~~v~~~~~-~--------~~l~~~d~iil~GG~~~~~~~l~~~~~~~~~i~~~~~~g~ 72 (259)
|+++...-... .+.+..++.|...+.-+. + ..+..+|.||+..-..+ ...|+++...++
T Consensus 71 iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e-----------~~ai~EA~~l~I 139 (208)
T 1vi6_A 71 ILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAID-----------KQAVSEATAVGI 139 (208)
T ss_dssp EEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTT-----------HHHHHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcc-----------hhHHHHHHHhCC
Confidence 55554432222 344555667776554332 1 23456889888753211 234566777899
Q ss_pred cEEEEc
Q 024993 73 PVWGTC 78 (259)
Q Consensus 73 PiLGIC 78 (259)
|+.|+|
T Consensus 140 PvIalv 145 (208)
T 1vi6_A 140 PVVALC 145 (208)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999999
No 243
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=20.75 E-value=95 Score=24.74 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=25.1
Q ss_pred CEEEEEe-cCCChHHHHHHHHhCCCeEEEeCCCCCCCCcCEEEEcCC
Q 024993 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (259)
Q Consensus 1 mki~vl~-~~G~~~~~~~~L~~~G~~v~~~~~~~~l~~~d~iil~GG 46 (259)
|||+|+. .+|++..+.+.|+..+.. .+.|.||+.|-
T Consensus 13 ~~i~visDiHg~~~~l~~~l~~~~~~----------~~~d~~i~~GD 49 (221)
T 1g5b_A 13 RNIWVVGDLHGCYTNLMNKLDTIGFD----------NKKDLLISVGD 49 (221)
T ss_dssp SCEEEECCCTTCHHHHHHHHHHHTCC----------TTTCEEEECSC
T ss_pred ceEEEEEcCCCCHHHHHHHHHHccCC----------CCCCEEEEeCC
Confidence 7888886 579998888888765421 24577777774
No 244
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.69 E-value=77 Score=21.94 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=27.8
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCCCC------CCCcCEEEE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ------LQNVSSLII 43 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~------l~~~d~iil 43 (259)
||+|++-...... +.+.|+..|+++....+.++ -..+|.+++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~ 52 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILL 52 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEE
Confidence 6888864333333 45678889998887765421 136899888
No 245
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=20.64 E-value=2e+02 Score=24.53 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=16.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhC-CCeEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRL-GVKGVE 28 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~-G~~v~~ 28 (259)
|||+|+-. |+.. ...+.|.+. +++++.
T Consensus 5 ~rvgiiG~-G~~g~~~~~~l~~~~~~~l~a 33 (344)
T 3euw_A 5 LRIALFGA-GRIGHVHAANIAANPDLELVV 33 (344)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCTTEEEEE
T ss_pred eEEEEECC-cHHHHHHHHHHHhCCCcEEEE
Confidence 47999965 5544 355666655 666664
No 246
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=20.60 E-value=3.8e+02 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=20.3
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~ 29 (259)
|||+|+-..|... ...++|+..+.+++.+
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav 33 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVAS 33 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEE
Confidence 6899997655433 4567787778777654
No 247
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=20.58 E-value=67 Score=25.11 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=41.1
Q ss_pred CEEEEEecCCChHH-HHHHHHhCCCeEEEeCCCCC----C--CCcCEEEEcCCch--hHHHHHHhhCCHHHHHHHHHHcC
Q 024993 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ----L--QNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG 71 (259)
Q Consensus 1 mki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil~GG~~--~~~~~l~~~~~~~~~i~~~~~~g 71 (259)
|||+|++..-.... +.+.|+..|+++....+.++ + ..+|.+|+-=..+ +..+ +.+.|++. ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~-------~~~~lr~~-~~~ 74 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE-------ILKSMRES-GVN 74 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHH-------HHHHHHHT-TCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHH-------HHHHHHhc-CCC
Confidence 68888865433333 45678888998877665321 1 3689988732211 1111 22344432 246
Q ss_pred CcEEEEchh
Q 024993 72 KPVWGTCAG 80 (259)
Q Consensus 72 ~PiLGIC~G 80 (259)
.|++.++.-
T Consensus 75 ~~ii~ls~~ 83 (225)
T 1kgs_A 75 TPVLMLTAL 83 (225)
T ss_dssp CCEEEEESS
T ss_pred CCEEEEeCC
Confidence 899888743
No 248
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.52 E-value=1.4e+02 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=18.1
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCC
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK 31 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~ 31 (259)
++|+|+- .|... .-.+.|.+.|++++++.+
T Consensus 32 k~VLVVG-gG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 32 RSVLVVG-GGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CCEEEEC-CSHHHHHHHHHHGGGCCCEEEECS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEECC
Confidence 3566662 23332 234677788999988753
No 249
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=20.33 E-value=70 Score=25.18 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=28.6
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
|||+|++..-... .+.+.|+..|+++....+.++ + ..+|.+|+
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvll 57 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 57 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 6888886543333 355678888998877665421 1 36899887
No 250
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=20.32 E-value=98 Score=24.14 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=21.9
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEe
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~ 29 (259)
|||+|.-..|... .+.+.|.+.|.+|..+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAV 30 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEE
Confidence 9988886555555 4678888889988775
No 251
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=20.31 E-value=1.2e+02 Score=26.06 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=22.5
Q ss_pred CEEEEEecC------CC----hHHHHHHHHhCCCeEEEeC
Q 024993 1 MVVGVLALQ------GS----FNEHIAALKRLGVKGVEIR 30 (259)
Q Consensus 1 mki~vl~~~------G~----~~~~~~~L~~~G~~v~~~~ 30 (259)
|||+++... |. ...+.+.|.+.|++|+++.
T Consensus 3 MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 999999732 32 2256788999999999875
No 252
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=20.30 E-value=1.3e+02 Score=20.83 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=27.7
Q ss_pred EEEEEecCCChHH-HHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 2 ki~vl~~~G~~~~-~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
||+|++-.-.... +.+.|+..|+++....+.++ + ..+|.+++
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvll 52 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVL 52 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 6888864333333 45678889999887765421 1 36898888
No 253
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=20.18 E-value=1.6e+02 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=18.0
Q ss_pred CEEEEEecCCChHH--HHHHHHh-CCCeEEE
Q 024993 1 MVVGVLALQGSFNE--HIAALKR-LGVKGVE 28 (259)
Q Consensus 1 mki~vl~~~G~~~~--~~~~L~~-~G~~v~~ 28 (259)
|||+|+-. |.... ..+.|.+ .+++++.
T Consensus 7 ~~igiIG~-G~~g~~~~~~~l~~~~~~~l~a 36 (308)
T 3uuw_A 7 IKMGMIGL-GSIAQKAYLPILTKSERFEFVG 36 (308)
T ss_dssp CEEEEECC-SHHHHHHTHHHHTSCSSSEEEE
T ss_pred CcEEEEec-CHHHHHHHHHHHHhCCCeEEEE
Confidence 57999965 66654 4566765 4677774
No 254
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=20.18 E-value=81 Score=21.39 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=27.5
Q ss_pred CEEEEEecCCChH-HHHHHHHhCCCeEEEeCCCCC----C--CCcCEEEE
Q 024993 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQ----L--QNVSSLII 43 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~G~~v~~~~~~~~----l--~~~d~iil 43 (259)
++|+|++..-... .+.+.|+..|+++....+.++ + ..+|.+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~ 51 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVIL 51 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 3688886433333 355678888998887665321 1 35888887
No 255
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=20.13 E-value=68 Score=29.05 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCeEEEe---CCC-CC--------CCCcCEEEEcCCch
Q 024993 14 EHIAALKRLGVKGVEI---RKP-DQ--------LQNVSSLIIPGGES 48 (259)
Q Consensus 14 ~~~~~L~~~G~~v~~~---~~~-~~--------l~~~d~iil~GG~~ 48 (259)
.+..+|++.|+++..+ .+. +. ++++|.||.+||.+
T Consensus 208 ~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 208 AVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCC
Confidence 3557789999987653 332 11 23689999999854
No 256
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=20.12 E-value=3e+02 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=18.0
Q ss_pred CEEEEEecCCChH-HHHHHHHhC--CCeEEEe
Q 024993 1 MVVGVLALQGSFN-EHIAALKRL--GVKGVEI 29 (259)
Q Consensus 1 mki~vl~~~G~~~-~~~~~L~~~--G~~v~~~ 29 (259)
|||+|+-. |... ...+.|.+. +++++.+
T Consensus 14 ~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav 44 (354)
T 3q2i_A 14 IRFALVGC-GRIANNHFGALEKHADRAELIDV 44 (354)
T ss_dssp EEEEEECC-STTHHHHHHHHHHTTTTEEEEEE
T ss_pred ceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEE
Confidence 57999965 5544 455777665 6676643
No 257
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.09 E-value=2.6e+02 Score=22.57 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHhCCCeEEEeCCCCC----------C--CCcCEEEEcCC
Q 024993 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (259)
Q Consensus 15 ~~~~L~~~G~~v~~~~~~~~----------l--~~~d~iil~GG 46 (259)
+.+++++.|+++.+.....+ + ..+|+||+.+.
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (291)
T 3egc_A 30 VESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPS 73 (291)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45677788999988754311 1 47999999775
Done!