RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024993
(259 letters)
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 241 bits (617), Expect = 3e-81
Identities = 91/224 (40%), Positives = 126/224 (56%), Gaps = 33/224 (14%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAG---SDNPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
+L++ G E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIK------GLDEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVGE 224
IVA +QG LG +FHPELT D R F++M+ E +
Sbjct: 153 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQ 192
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 238 bits (610), Expect = 7e-80
Identities = 96/221 (43%), Positives = 127/221 (57%), Gaps = 33/221 (14%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVL LQG+ EH+ A++ G + V ++K +QL+ + L++PGGESTTM RL + + L
Sbjct: 24 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGL 83
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
L++F GKP++GTCAGLI LA + VG + +G +D TV RN FG Q +SFEA
Sbjct: 84 MEPLKQFAAAGKPMFGTCAGLILLAKRIVG---YDEPHLGLMDITVERNSFGRQRESFEA 140
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
ELS+ G + F GVFIRAP +++ G VDVLA Y
Sbjct: 141 ELSIK------GVGDGFVGVFIRAPHIVEAGDGVDVLATYN------------------- 175
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 221
IVA RQG LG +FHPELT D R YFL M+ E
Sbjct: 176 -----DRIVAARQGQFLGCSFHPELTDDHRLMQYFLNMVKE 211
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 238 bits (608), Expect = 9e-80
Identities = 87/218 (39%), Positives = 124/218 (56%), Gaps = 32/218 (14%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVL +QG EH+ AL +LGV+ + ++ P+QL V LI+PGGESTTM R+ + ++
Sbjct: 21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
L E + G PV+ TCAG+I LA + QE +G LD TV RN +G Q++SFE
Sbjct: 81 DEKLVERINNGLPVFATCAGVILLAKRIKN---YSQEKLGVLDITVERNAYGRQVESFET 137
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
+ +PA+ G + FR +FIRAP +++ G +V++LA Y
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILATY-------------------- 172
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKM 218
V V++GN+L FHPELT D R H YFL+M
Sbjct: 173 ----DYDPVLVKEGNILACTFHPELTDDLRLHRYFLEM 206
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 220 bits (562), Expect = 5e-73
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 40/223 (17%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M++GVLA+QG EH A+K+ G + ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
++ P+ GTCAG++ L+ Q L+ +D TV RN +G Q+ SFE
Sbjct: 61 LEKIKNS---NLPILGTCAGMVLLSKGTG----INQILLELMDITVKRNAYGRQVDSFEK 113
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLADYPVPSNKVLYSSSTVEIQEE 179
E+ GVFIRAP V + DV+V+A
Sbjct: 114 EIEFK-------DLGKVYGVFIRAPVVDKILSDDVEVIARD------------------- 147
Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTADT-RWHSYFLKMMSE 221
IV V+QG + +FHPEL+ D + + YF++ +
Sbjct: 148 -----GDKIVGVKQGKYMALSFHPELSEDGYKVYKYFVENCVK 185
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 212 bits (540), Expect = 3e-69
Identities = 79/232 (34%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEI---RKPDQLQNVSSLIIPGGESTTMARLAEY 57
+ +GVL+LQG F HI +L + + I R L L+IPGGESTT+ R Y
Sbjct: 4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63
Query: 58 HN--LFPALREFVK-MGKPVWGTCAGLIFLA----NKAVGQKLGGQELVGGLDCTVHRNF 110
N L+ AL F+ + KP+WGTCAG I L+ N + G + GGLD T+ RNF
Sbjct: 64 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLADYPVPSNKVLY 169
+GSQ SF L++ + + IRAP + ++ +V VLA
Sbjct: 124 YGSQNDSFICSLNIISD--SSAFKKDLTAACIRAPYIREILSDEVKVLA----------- 170
Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSE 221
+ +I AV Q N LGT FHPEL T + YF + +
Sbjct: 171 -------TFSHESYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYFYEKVKN 215
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 210 bits (536), Expect = 5e-69
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 34/219 (15%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
VVGVLALQG F EH ALKRLG++ E+RK + L+ + +LI+PGGESTT+ +LA + +
Sbjct: 3 GVVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGI 62
Query: 61 FPALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119
+R+ V+ G ++GTCAG I+LA + VG Q +G L+ V RN FG Q++SFE
Sbjct: 63 EDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFE 120
Query: 120 AELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEE 179
+L V G +F GVFIRAP +G V+VLA
Sbjct: 121 EDLEVE-------GLGSFHGVFIRAPVFRRLGEGVEVLARL------------------- 154
Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKM 218
+ V VRQG +L ++FHPELT D R H YFL++
Sbjct: 155 -----GDLPVLVRQGKVLASSFHPELTEDPRLHRYFLEL 188
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 50.6 bits (122), Expect = 6e-08
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
AL+ G + P + L++PG G M E +R ++ G P
Sbjct: 21 ALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQES-GFVERVRRHLERGLPFL 79
Query: 76 GTCAGL 81
G C G+
Sbjct: 80 GICVGM 85
Score = 30.5 bits (70), Expect = 0.38
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 186 KVIVAVRQGNLLGTAFHPE 204
+ + NLL FHPE
Sbjct: 162 PFTALLAKENLLAPQFHPE 180
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F
1kxj_A 2wjz_B
Length = 201
Score = 47.1 bits (113), Expect = 1e-06
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 18 ALKRLGVKG----VEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMG 71
+KR +E+ + + L IPG G M RL E +L +R+ V+
Sbjct: 19 GVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLREN-DLIDFVRKHVEDE 77
Query: 72 KPVWGTCAGL 81
+ V G C G+
Sbjct: 78 RYVVGVCLGM 87
Score = 30.6 bits (70), Expect = 0.34
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 185 KKVIVAVRQGNLLGTAFHPE 204
+ AVR+G +LG FHPE
Sbjct: 161 EIFPSAVRKGRILGFQFHPE 180
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 47.5 bits (113), Expect = 2e-06
Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 33/198 (16%)
Query: 18 ALKRLGVKGVEIRKPD--QLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKP 73
A++ LG + ++ P + S LI+PG G + L +RE+++ GKP
Sbjct: 23 AIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNR-GFEKPIREYIESGKP 81
Query: 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGG 133
+ G GL L + + + +D + R F E VP +
Sbjct: 82 IMGIXVGLQALFAGS--VESPKSTGLNYIDFKLSR--FDDS------EKPVPEIG----- 126
Query: 134 PETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMP-------EKK 186
+ + P Y V S + +S + E + ++
Sbjct: 127 ---WNSCIPSENLFFGLDPYKRY---YFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEE 180
Query: 187 VIVAVRQGNLLGTAFHPE 204
I AV + N+ T FHPE
Sbjct: 181 FIAAVNKNNIFATQFHPE 198
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta
structure, ATP-binding, cytoplasm, ligase,
nucleotide-binding, purine biosynthesis; HET: CYG ADP;
3.50A {Thermotoga maritima}
Length = 213
Score = 41.7 bits (99), Expect = 7e-05
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 1 MVVGVLALQGSFNEH--IAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES-------TTM 51
V+ GS + AL+ G + + D+L + +I+PGG S +
Sbjct: 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAV 62
Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAG 80
A + + + + GK + G C G
Sbjct: 63 AARE---KIAFEIAKAAERGKLIMGICNG 88
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 41.3 bits (97), Expect = 1e-04
Identities = 32/235 (13%), Positives = 55/235 (23%), Gaps = 75/235 (31%)
Query: 5 VLALQGSFNEHIAALKR-LGVKGVEIRK---------PDQLQNVSSLIIPGGESTTMARL 54
+ + E A ++G ++ P + + LI+ GG + +
Sbjct: 3 IHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTK 62
Query: 55 AEYHNLFPA-----LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN 109
E+ +++ K K + G C LG Q + +
Sbjct: 63 KEFPYYDAQAEVKLIQKAAKSEKIIVGVC--------------LGAQLMGVAYGADYLHS 108
Query: 110 ---FFG-SQIQSFEAELSVPALASQEGGPETFRGVF------IRAPAVLDVGPDVDVLAD 159
G I EA L+ + V P VLA
Sbjct: 109 PKKEIGNYLISLTEAGKMDSYLS---DFSDDLL-VGHWHGDMPGLP------DKAQVLA- 157
Query: 160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG-NLLGTAFHPELTADT--RW 211
S Q ++ G H E T +
Sbjct: 158 ----------ISQGCPRQ------------IIKFGPKQYAFQCHLEFTPELVAAL 190
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 39.8 bits (93), Expect = 4e-04
Identities = 43/227 (18%), Positives = 64/227 (28%), Gaps = 65/227 (28%)
Query: 5 VLALQGSFNEHIAALKR-LGVKGVEIR---------KPDQLQNVSSLIIPGGE-STTM-A 52
VLA++ E + ++ K L+ S +++ GG
Sbjct: 15 VLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEE 74
Query: 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG 112
+ F + E +K P G C LG Q L L +V+R G
Sbjct: 75 KYPFLKYEFQLIEEILKKEIPFLGIC--------------LGSQMLAKVLGASVYRGKNG 120
Query: 113 SQIQSFEAELSVPALASQEGGPETFRGVF------IRAPAVLDVGPDVDVLADYPVPSNK 166
+I + E V P+ R VF P +
Sbjct: 121 EEIGWYFVEK-VSDNKFFREFPDRLR-VFQWHGDTFDLP------RRATRVF-------- 164
Query: 167 VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RW 211
+S E Q G +G FH E+ A T RW
Sbjct: 165 ---TSEKYENQ------------GFVYGKAVGLQFHIEVGARTMKRW 196
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 38.2 bits (89), Expect = 0.001
Identities = 38/230 (16%), Positives = 63/230 (27%), Gaps = 71/230 (30%)
Query: 5 VLALQGSFNEHIAALKR-LGVKGVEIRK---------PDQLQNVSSLIIPGGESTTMARL 54
V+ +Q S +E L + + + P ++++ S L + GG + L
Sbjct: 6 VMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDL 65
Query: 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FF 111
L +R+ V PV G C LGGQ L + V +
Sbjct: 66 PWMPTLLALIRDAVAQRVPVIGHC--------------LGGQLLAKAMGGEVTDSPHAEI 111
Query: 112 G-SQIQSFEAELSVPALASQEGGPETFRGVF------IRAPAVLDVGPDVDVLADYPVPS 164
G + ++ L G + +F P P +
Sbjct: 112 GWVRAWPQHVPQALEWL----GTWDELE-LFEWHYQTFSIP------PGAVHIL------ 154
Query: 165 NKVLYSSSTVEIQEENAMPEKKVIVAVRQGN-LLGTAFHPELTADT--RW 211
S Q A + +G H E+ A W
Sbjct: 155 -----RSEHCANQ------------AYVLDDLHIGFQCHIEMQAHMVREW 187
>2fex_A Conserved hypothetical protein; structural genomics, protein
structure initiative, PSI, MIDW center for structural
genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP:
c.23.16.2
Length = 188
Score = 35.4 bits (82), Expect = 0.008
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 15 HIAALKRLGVK---GVEIRKPDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALR 65
A + V G+++ PD ++ +L+IPGG S A +L ++
Sbjct: 33 VHATPDGMPVTSMGGLKV-TPDTSYDALDPVDIDALVIPGGLSWEK-GTAA--DLGGLVK 88
Query: 66 EFVKMGKPVWGTCAGLIFLA 85
F + V G CA L
Sbjct: 89 RFRDRDRLVAGICAAASALG 108
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad,
strand-helix MO hydrolase; 1.20A {Salmonella
typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Length = 229
Score = 35.1 bits (80), Expect = 0.013
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 18 ALKRLGVKGVEI----RKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73
L LGV I ++ +I+ GG + + + + L + + VK G
Sbjct: 56 VLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGAL 115
Query: 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDC 104
G AG G D
Sbjct: 116 YIGWSAGANLACPTIRTTNDMPIVDPNGFDA 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.015
Identities = 58/331 (17%), Positives = 90/331 (27%), Gaps = 147/331 (44%)
Query: 8 LQGSFNE-HIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLA------EYHNL 60
L+G N+ H A K L + K LI ++ AR+ + N
Sbjct: 96 LEG--NDIHALAAKLLQENDTTLVK------TKELI----KNYITARIMAKRPFDKKSN- 142
Query: 61 FPALREFVKMGKPVWGTCAGL--IFLANKAVGQKLGGQ--------ELVGGLDCTVHRNF 110
AL V G A L IF GGQ EL R+
Sbjct: 143 -SALFRAVGEGN------AQLVAIF----------GGQGNTDDYFEEL---------RDL 176
Query: 111 F---GSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG---------PDVDVLA 158
+ + + S L+ VF L++ PD D L
Sbjct: 177 YQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVF---TQGLNILEWLENPSNTPDKDYLL 232
Query: 159 DYPV--PSNKVL----Y------------------SSSTVEIQEENAMPEKKVIVAVRQG 194
P+ P V+ Y +T Q ++ AV
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG--------LVTAV--- 281
Query: 195 NLLGTAFHPELTADTRWHSYF------LKMMSEVG-----------------EGTSSGGK 231
A D+ W S+F + ++ +G E + +
Sbjct: 282 ---AIA-----ETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 232 GTSSGIVVVGGENLGFNQ-QPKID-----LP 256
G S ++ + L Q Q ++ LP
Sbjct: 333 GVPSPMLSISN--LTQEQVQDYVNKTNSHLP 361
Score = 32.3 bits (73), Expect = 0.19
Identities = 43/266 (16%), Positives = 86/266 (32%), Gaps = 97/266 (36%)
Query: 22 LGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPAL----REFVKMGKPVWGT 77
L + + +Q+Q + + T + L + +L + V G P
Sbjct: 339 LSISNL---TQEQVQ---DYV-----NKTNSHLPAGKQVEISLVNGAKNLVVSGPP---- 383
Query: 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQI-QSFEAELSVPALASQEGGPET 136
Q L G L+ T+ + S + QS +P S+
Sbjct: 384 ------------------QSLYG-LNLTLRKAKAPSGLDQS-----RIPF--SER--KLK 415
Query: 137 FRGVF--IRAP--------AVLDVGPDV---DVLAD-----YPVPSNKVLYSSST-VEIQ 177
F F + +P A + D+ +V + PV Y + +++
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV------YDTFDGSDLR 469
Query: 178 EENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKMMSEVGEGTSSG-GK----- 231
+ ++++ + + + E T + ++ L + G G +SG G
Sbjct: 470 VLSGSISERIVDCIIRLPV-----KWETTTQFK-ATHIL----DFGPGGASGLGVLTHRN 519
Query: 232 --GTSSGIVVVG------GENLGFNQ 249
GT ++V G ++ GF Q
Sbjct: 520 KDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 31.6 bits (71), Expect = 0.33
Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 44/142 (30%)
Query: 19 LKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYH-NLFPALREFVKMGKPV-WG 76
K L V N + IP ++ + L ++ + + + + PV W
Sbjct: 440 NKDLVKNNVSF-------NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI-IRLPVKWE 491
Query: 77 TCAGLIFLANKAV--GQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGP 134
T F A + G GG +G L HRN ++G
Sbjct: 492 TT--TQFKATHILDFGP--GGASGLGVL---THRN--------------------KDG-- 522
Query: 135 ETFRGVFIRAPAVLDVGPDVDV 156
GV + LD+ PD D
Sbjct: 523 ---TGVRVIVAGTLDINPDDDY 541
Score = 28.1 bits (62), Expect = 3.8
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 26/100 (26%)
Query: 117 SFEAELSVPA----LASQEGGPETFRGVFIRA-PAVLD--VGPD-----VDVLADYPVPS 164
S E L VP +ASQ + F + P + D +++ +
Sbjct: 15 SLEHVLLVPTASFFIASQ------LQEQFNKILPEPTEGFAADDEPTTPAELVGKF---- 64
Query: 165 NKVLYSSSTVEIQEENAMPE--KKVIVAVRQGNLLGTAFH 202
+ Y SS VE + + + L G H
Sbjct: 65 --LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.020
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 114 QIQSFEAEL------SVPALA 128
++ +A L S PALA
Sbjct: 21 ALKKLQASLKLYADDSAPALA 41
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for
structural genomics of infectious disease chaperone;
2.30A {Bacillus anthracis}
Length = 212
Score = 33.9 bits (78), Expect = 0.030
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85
LI+PGG + + + + + + + +K+G V C LA
Sbjct: 78 LILPGGTTWSE-EIHQ--PILERIGQALKIGTIVAAICGATDALA 119
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics,
protein structure initiative; 2.06A {Bacillus subtilis}
Length = 206
Score = 33.5 bits (77), Expect = 0.041
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85
L++ GG + + L ++ + P+ C + FLA
Sbjct: 67 LVMIGG----DSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLA 107
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363,
csgid, similar to peptidase E, hydrolase, protease,
serine protease; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 206
Score = 32.4 bits (73), Expect = 0.083
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 17 AALKRLGVKGVEIRKPDQ--------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFV 68
AL+ LG+ E+ + L+ + + GG + + + + + E +
Sbjct: 51 KALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLILEEI 110
Query: 69 KMGKPVWGTCAGLIFLA 85
GK G AG + +
Sbjct: 111 AAGKLYIGESAGAVITS 127
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
struct initiative, midwest center for structural
genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 31.4 bits (72), Expect = 0.17
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKM----GKPVWGTCAG 80
L+ G++ + + L E +K GK + G CAG
Sbjct: 70 LVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAG 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.19
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 21/100 (21%)
Query: 105 TVHRNFFGSQIQ---SFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161
V + F ++ F + +++ P ++I L D V A Y
Sbjct: 78 MVQK-FVEEVLRINYKFLMS----PIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYN 130
Query: 162 VPSNKVLYSSSTVEIQE--ENAMPEKKVIVAVRQGNLLGT 199
V + +++++ P K V++ G +LG+
Sbjct: 131 VSRLQPY-----LKLRQALLELRPAKNVLI---DG-VLGS 161
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE PG4; 1.70A {Listeria
monocytogenes} SCOP: c.1.15.4
Length = 296
Score = 31.4 bits (71), Expect = 0.22
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 6 LALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALR 65
L + SF + + G G+ +R + + G M R+ + HN+
Sbjct: 32 LGTEVSFPKRVKVAAENGFDGIGLRAEN----YVDALAAGLTDEDMLRILDEHNMKVTEV 87
Query: 66 EFV 68
E++
Sbjct: 88 EYI 90
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Bacillus subtilis} SCOP:
c.1.15.4 PDB: 1i6n_A
Length = 278
Score = 31.2 bits (71), Expect = 0.24
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 6 LALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ + ++ G +EIR D+L + +A + H++
Sbjct: 10 TLENSNLKLDLELCEKHGYDYIEIRTMDKLPEY----LKDHSLDDLAEYFQTHHI 60
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS,
structural genomics; 2.03A {Escherichia coli} SCOP:
c.23.16.2
Length = 193
Score = 31.1 bits (71), Expect = 0.25
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85
L++PGG S L + R+FV GKPV+ C G L
Sbjct: 90 LLLPGGHS--PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLI 132
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase,
protease; 1.50A {Synechocystis SP}
Length = 291
Score = 31.3 bits (70), Expect = 0.29
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 9 QGSFNEHIAALKRLGVKGVEI------------RKPDQLQNVSSLIIPGGESTTMARLAE 56
+ +GVK +++ ++ + + + GG+ + L
Sbjct: 70 LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLA 129
Query: 57 YHNLFPALREFVKMGKPVW-GTCAGLIFLAN 86
L +R+ V G+ GT AG + +
Sbjct: 130 DTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A
{Thermococcus onnurineus} PDB: 1g2i_A
Length = 168
Score = 29.8 bits (68), Expect = 0.52
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85
L++PGG++ + R + KPV C G L
Sbjct: 67 LVLPGGKA--PEIVRLNEKAVMITRRMFEDDKPVASICHGPQILI 109
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.15A {Planctomyces limnophilus}
Length = 290
Score = 30.2 bits (68), Expect = 0.60
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 1 MVVGVL-ALQGSFNEHIAALKRLGVKGVEIRKPD 33
+GV ++ H+ + L V V++ P
Sbjct: 11 WPIGVFTSVDAGLGVHLEVAQDLKVPTVQVHAPH 44
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural
genomics consortium, SGC,; 1.86A {Trypanosoma brucei}
PDB: 3fb3_A
Length = 161
Score = 29.7 bits (67), Expect = 0.66
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 144 APAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTA--- 200
+ L++ + L + P S L + + A KV G ++G+A
Sbjct: 31 LSSHLEL---LGHLTEAPPLSGVEL---ANIADMRRRAGIVTKVFCHQPTGRIVGSASLM 84
Query: 201 FHPELTADTRWHSY 214
P+ T R +
Sbjct: 85 IQPKFTRGGRAVGH 98
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann
fold, cytosol; 2.05A {Arabidopsis thaliana}
Length = 396
Score = 30.1 bits (68), Expect = 0.79
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85
L+IPGG + LA ++ ++EF+ KPV C G LA
Sbjct: 286 LVIPGGRA--PEYLALNEHVLNIVKEFMNSEKPVASICHGQQILA 328
Score = 29.7 bits (67), Expect = 0.99
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVG 100
L+IPGG + LA ++ ++EF + GKP+ C G L + V
Sbjct: 93 LVIPGGRA--PEYLALTASVVELVKEFSRSGKPIASICHG---------QLILAAADTVN 141
Query: 101 GLDCTVH 107
G CT +
Sbjct: 142 GRKCTAY 148
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 29.6 bits (66), Expect = 1.0
Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 53/212 (25%)
Query: 18 ALKRLGVKGVEIR-------KPDQLQNVSSLIIPGGESTTMARL----AEYHNLFPALRE 66
L+ G + V +R ++++ ++ PGG A+
Sbjct: 60 YLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSF 119
Query: 67 FVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA 126
PVWGTC G L + + + +D + NF G Q+ S
Sbjct: 120 DDGDYFPVWGTCLGFEEL-SLLISGEC-LLTATDTVDVAMPLNFTGGQLHS--------- 168
Query: 127 LASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKK 186
+F P L + LA P+ +N +S S + +
Sbjct: 169 ------------RMFQNFPTEL-----LLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFF 211
Query: 187 VIVAV--------------RQGNLLGTAFHPE 204
++ + + G +HPE
Sbjct: 212 NVLTTNTDGKIEFISTMEGYKYPVYGVQWHPE 243
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like
domains; structural genomics; HET: MSE CSX; 1.90A
{Anabaena variabilis atcc 29413}
Length = 365
Score = 29.3 bits (66), Expect = 1.2
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86
++IPGG + ++ N ++E ++ GK V C G L
Sbjct: 77 VVIPGGMAPD--KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIE 120
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose
3-epimeras tagatose 3-epimerase, isomerase; 2.20A
{Thermotoga maritima}
Length = 290
Score = 29.0 bits (65), Expect = 1.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 3 VGVLALQGSFNEHIAALKRLGVKGVEI 29
LA +G + + KR+G + VEI
Sbjct: 34 FDALAFKGDLRKGMELAKRVGYQAVEI 60
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 28.6 bits (63), Expect = 1.4
Identities = 17/60 (28%), Positives = 23/60 (38%)
Query: 153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWH 212
D L+D + Y S+ E EE PE+ + AV Q L+G T W
Sbjct: 13 LKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGAIPQYGITGWE 72
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN
structural genomics, JCSG, protein structure
initiative; 2.40A {Salmonella typhimurium LT2} SCOP:
c.1.15.4
Length = 272
Score = 28.8 bits (64), Expect = 1.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 11 SFNEHIAALKRLGVKGVEIR 30
S +KRL VE+R
Sbjct: 20 SIEAFFRLVKRLEFNKVELR 39
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI-biology,; HET: UNL PG4; 1.45A
{Sinorhizobium meliloti} PDB: 3ju2_A
Length = 275
Score = 28.6 bits (64), Expect = 2.0
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 6 LALQGSFNEHIAALKRLGVKGVEIRKPD 33
+ Q F E + + G+ + +
Sbjct: 14 IREQCGFAEAVDICLKHGITAIAPWRDQ 41
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate
isomerase/epimerase; 1.78A {Anabaena variabilis atcc
29413}
Length = 335
Score = 28.5 bits (63), Expect = 2.2
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 6 LALQGSFNEHIAALKRLGVKGVEI 29
L + HI L+R G G E
Sbjct: 27 LDYRRIVVAHIKKLQRFGYSGFEF 50
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, ALS collaborative crystallography, isopr
biosynthesis; 1.90A {Ehrlichia chaffeensis}
Length = 242
Score = 28.1 bits (62), Expect = 2.6
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 41 LIIPGG------ESTTMARLAEYHNLFPA----LREFVKMGKPVWGTCAGLIFLANKAVG 90
L+IPGG S E + P +REF KP+ C + +
Sbjct: 111 LVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVV-ALLK 169
Query: 91 QKLG 94
Sbjct: 170 DIAK 173
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, protease hydrolase, stress response; 2.15A
{Deinococcus radiodurans}
Length = 190
Score = 27.5 bits (62), Expect = 3.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86
L++PGG + +L +R+ GKP+ C G L+
Sbjct: 79 LLLPGG-TVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSE 123
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein;
2.00A {Drosophila melanogaster}
Length = 190
Score = 27.5 bits (62), Expect = 3.9
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85
+++PGG + + E + LR G + CA LA
Sbjct: 71 VVLPGGLGGS-NAMGESSLVGDLLRSQESGGGLIAAICAAPTVLA 114
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics,
unknown function; 1.65A {Escherichia coli} SCOP:
c.23.16.2 PDB: 1oy1_A
Length = 232
Score = 27.3 bits (60), Expect = 4.1
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 41 LIIPGGES---------TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86
LI+PGG + + L + + GKP+ C L
Sbjct: 94 LIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPK 148
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 27.3 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 223 GEGT----SSGGKGTSSGIVVVGGENLGFNQQP 251
G+GT S+GG G+ G GG L Q P
Sbjct: 108 GQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP 140
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A
{Vibrio cholerae o1 biovar el tor}
Length = 208
Score = 27.2 bits (61), Expect = 4.9
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80
L +PGG A+ L + F + GK V CA
Sbjct: 75 LALPGGVGGA-QAFADSTALLALIDAFSQQGKLVAAICAT 113
>3u0h_A Xylose isomerase domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
TIM barrel; 2.30A {Alicyclobacillus acidocaldarius
subsp}
Length = 281
Score = 26.7 bits (59), Expect = 7.1
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 5 VLALQGSFNEHIAALKRLGVKGVEIRKPD 33
L + S ++ + G + V++
Sbjct: 11 TLVDETSLVLYLDLARETGYRYVDVPFHW 39
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown
function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Length = 205
Score = 26.4 bits (59), Expect = 7.2
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80
+++PGG + L +++F + G+ V CA
Sbjct: 70 IVLPGGIKGA-ECFRDSTLLVETVKQFHRSGRIVAAICAA 108
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: AMP; 1.94A {Bifidobacterium
adolescentis} PDB: 3e0f_A*
Length = 301
Score = 26.5 bits (59), Expect = 8.5
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
+E + A+ G+ G+E+ + + +A H+L
Sbjct: 216 DEQLDAMIADGLDGLEVWHRGNPPE---------QRERLLTIAARHDLLV 256
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 26.5 bits (59), Expect = 8.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 61 FPALREFVKMGKPVWGTCAGL 81
+R + GKP++ C G+
Sbjct: 98 IALVRAALDAGKPIFAICRGM 118
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB:
2yb4_A
Length = 292
Score = 26.5 bits (59), Expect = 8.5
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
I + G +G+E+ + + A A+ H L+
Sbjct: 204 RLILDFQAAGGQGIEVASGSHSLD---------DMHKFALHADRHGLYA 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.396
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,001,681
Number of extensions: 242978
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 66
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)