Your job contains 1 sequence.
>024995
MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED
IFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK
SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE
DGIDDVRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSLIRKAS
KRHCNEYWNVFHETAIVNN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024995
(259 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095203 - symbol:AT3G23700 species:3702 "Arabi... 823 4.5e-82 1
TAIR|locus:2010336 - symbol:AT1G12800 species:3702 "Arabi... 190 8.3e-14 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 180 5.8e-13 1
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 171 4.0e-11 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 171 7.1e-11 1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 151 8.8e-11 1
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 170 9.6e-11 1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 168 1.9e-10 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 168 1.9e-10 1
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 166 3.7e-10 1
UNIPROTKB|Q81VX9 - symbol:BAS0060 "S1 RNA binding domain ... 143 7.9e-10 1
TIGR_CMR|BA_0060 - symbol:BA_0060 "S1 RNA binding domain ... 143 7.9e-10 1
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 163 9.5e-10 1
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 163 9.5e-10 1
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 162 1.2e-09 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 135 6.8e-09 1
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 155 1.1e-08 1
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 154 1.3e-08 1
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 125 9.4e-08 1
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 143 1.5e-07 1
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 145 1.7e-07 1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 144 1.7e-07 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 143 4.1e-07 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 142 5.2e-07 1
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 134 1.1e-06 2
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 143 1.3e-06 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 134 4.6e-06 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 127 2.9e-05 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 131 3.3e-05 1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 125 5.0e-05 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 125 5.1e-05 1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 125 5.1e-05 1
TIGR_CMR|CPS_4965 - symbol:CPS_4965 "putative transcripti... 120 0.00022 1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 116 0.00024 1
UNIPROTKB|P46837 - symbol:yhgF "predicted transcriptional... 119 0.00028 1
UNIPROTKB|Q9KNL6 - symbol:VC_2716 "Putative uncharacteriz... 119 0.00028 1
TIGR_CMR|VC_2716 - symbol:VC_2716 "conserved hypothetical... 119 0.00028 1
WB|WBGene00003393 - symbol:mog-5 species:6239 "Caenorhabd... 118 0.00061 1
UNIPROTKB|Q09530 - symbol:mog-5 "Probable pre-mRNA-splici... 118 0.00061 1
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 121 0.00063 2
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 169/247 (68%), Positives = 192/247 (77%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPS SCKEPQKSIHEIAK L GS + VKV+QA+EE +KL+ SEK A+W KYS VNV D
Sbjct: 138 LSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGD 197
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+F GR DYGAFIHLRF DGLYHLTGLVHVSEVSWD +QD+RD+L +GDEVRV V
Sbjct: 198 VFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTN 257
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGXXXXXXXXXXXXXXNTIEPLPGLGAIFE 175
ID+EKSRITLSIKQLE+DPLLETL+KVI +D +TIEPLPGL I E
Sbjct: 258 IDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNNG--DTIEPLPGLETILE 315
Query: 176 ELLQEDGIDDVRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL 235
ELL+EDGI+ V+I RQGFEKRVVSQDLQLWLSN PPS KF LLARAGRQVQEI L+ SL
Sbjct: 316 ELLKEDGIEAVKINRQGFEKRVVSQDLQLWLSNTPPSDGKFVLLARAGRQVQEIHLTTSL 375
Query: 236 IRKASKR 242
+ K+
Sbjct: 376 EQGGIKK 382
>TAIR|locus:2010336 [details] [associations]
symbol:AT1G12800 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0015995 "chlorophyll biosynthetic
process" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019252 "starch biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002684 GO:GO:0009507 GO:GO:0006950
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 EMBL:AY045991
EMBL:BT001968 EMBL:AB493452 IPI:IPI00516731 RefSeq:NP_172740.1
UniGene:At.25318 ProteinModelPortal:Q94AJ9 SMR:Q94AJ9 STRING:Q94AJ9
PRIDE:Q94AJ9 EnsemblPlants:AT1G12800.1 GeneID:837836
KEGG:ath:AT1G12800 TAIR:At1g12800 InParanoid:Q94AJ9 OMA:YFGIFVE
PhylomeDB:Q94AJ9 ProtClustDB:CLSN2682470 ArrayExpress:Q94AJ9
Genevestigator:Q94AJ9 Uniprot:Q94AJ9
Length = 767
Score = 190 (71.9 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 71/240 (29%), Positives = 106/240 (44%)
Query: 8 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS--EKDAVWNKYSSRVNVEDIFVGR 65
+E QK + G I V V+ AN +KL+FS ++ R + + VG
Sbjct: 528 REKQKFL----SSFVGQKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGD 583
Query: 66 DYGAFIHLRFPDGLY-HLTG---LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
I G++ L G LVH SEVSWD D G V KV ++D
Sbjct: 584 VVKCCIKKITYFGIFCELEGVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALE 643
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGXXXXXXXXXXXXXXNTIEPLPGLGAIFEELLQED 181
RI LS+K++ DPL E LE V+ D P + ++ +EL +
Sbjct: 644 RIFLSLKEITPDPLTEALESVVGGDNDQLGGRLQAAELDAEW----PDVESLIKELEMVE 699
Query: 182 GIDDVRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSLIRKASK 241
GI V +R F ++ Q+++ AP ++ LLARAG +VQE+ + SL ++ K
Sbjct: 700 GIQSVSKSRF-FLSPGLAPTFQVYM--APMFENQYKLLARAGNRVQELIVEASLSKEEMK 756
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 180 (68.4 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 41/105 (39%), Positives = 64/105 (60%)
Query: 43 SEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD 101
+E+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +
Sbjct: 180 AERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSE 233
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQD 146
I+N GDE+ VKV+K DRE++R++L +KQL EDP LE + K P++
Sbjct: 234 IVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE-ISKRYPEN 277
Score = 164 (62.8 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 43/132 (32%), Positives = 70/132 (53%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 314 KNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERER 428
Query: 123 ITLSIKQLEEDP 134
I+L +KQ E+DP
Sbjct: 429 ISLGVKQTEDDP 440
Score = 142 (55.0 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 42/122 (34%), Positives = 65/122 (53%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 --EGV---EGLVHVSEMDWTN-KNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 171 (65.3 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 43/129 (33%), Positives = 73/129 (56%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----R 65
Q S A+ L I +K ++ +EE KLV S + AV + +++ + + +G +
Sbjct: 217 QISSKAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLK 275
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI + G+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++L
Sbjct: 276 PYGAFIDI---GGI---NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSL 329
Query: 126 SIKQLEEDP 134
S K+LE P
Sbjct: 330 STKKLEPTP 338
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 171 (65.3 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 45/137 (32%), Positives = 74/137 (54%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQ 145
QL EDP + + K P+
Sbjct: 261 QLGEDPWV-AIAKRYPE 276
Score = 170 (64.9 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 43/133 (32%), Positives = 73/133 (54%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G ++ V V+ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERE 427
Query: 122 RITLSIKQLEEDP 134
RI+L +KQL EDP
Sbjct: 428 RISLGVKQLAEDP 440
Score = 130 (50.8 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 --EGV---EGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 151 (58.2 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 65 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
+ YGAF+ L D GLVH+SE++ ++DI D L G EV+VK++ ID EK++I+
Sbjct: 18 QSYGAFVAL---DN--STQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDIDEEKNKIS 72
Query: 125 LSIKQLEEDPLLETLEK 141
LSI+ EE P + +K
Sbjct: 73 LSIRATEEAPKEQPTKK 89
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 170 (64.9 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 39/112 (34%), Positives = 63/112 (56%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
+K + + +A ++Y S + DI GR YG F+ + D + + GL++V+++S
Sbjct: 195 RKALGAVHEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDIS 254
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 144
W + I + G EVRVKVI +D EK RI+L +KQL E+P + +K P
Sbjct: 255 WARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYTP 306
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 41/137 (29%), Positives = 67/137 (48%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNK----YSSRVNVEDIFVG-RDYGAFIH 72
L S ++V ++ +EE K+ S K D W K Y V V+ V D G +
Sbjct: 349 LPNSKVNVMLLSVDEEGHKIALSVKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIVLT 408
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE---GDEVRVKVIKIDREKSRITLSIKQ 129
L P G ++ G V ++ +SW Q+ R L GDEV K++ ++ ++ R+ +IK
Sbjct: 409 LLDP-GYSYVRGYVRLANISWS--QNPRKELKRFTIGDEVEAKLVHVNPDRGRVMFNIKY 465
Query: 130 LEEDPLLETLEKVIPQD 146
+E DP E + +V +D
Sbjct: 466 VEYDPFEEFISRVNEKD 482
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 34/126 (26%), Positives = 60/126 (47%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI + E ++ K W S + +++ G DYG F+ L
Sbjct: 268 GQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYTPGNVYPGVVTSVEDYGIFVRLE 327
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G+ GLVH E+SW ++ + + +V V ++ +D E +I LS+KQ ++P
Sbjct: 328 --EGV---EGLVHSGEISWT--RE-KPLFLPNSKVNVMLLSVDEEGHKIALSVKQCSDNP 379
Query: 135 LLETLE 140
+ L+
Sbjct: 380 WKKFLD 385
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 168 (64.2 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 200 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 253
Query: 126 SIKQLEEDPLLETLEKVIP 144
+KQL +DP + +E+ P
Sbjct: 254 GMKQLADDPWAK-IERRYP 271
Score = 168 (64.2 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 45/139 (32%), Positives = 77/139 (55%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 310 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 369
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKS 121
D+G FI L +G + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 370 ITDFGMFIGL---EG--DIDGLVHLSDISWTESGEEAIRNY-KKGDEVQAVILGIDPERE 423
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 424 RISLGIKQLEGDPFMEFVE 442
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 44/129 (34%), Positives = 67/129 (51%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 234 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 293
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 294 --EGV---EGLVHTSELDWTN-KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 347
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 348 NPWQEFAEK 356
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 168 (64.2 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 43/126 (34%), Positives = 70/126 (55%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKPLEFKVIKLDQKRNNVVVSRRAVIEAEGSAERDELLESLAEGQEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGIDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGMK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 168 (64.2 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 43/132 (32%), Positives = 73/132 (55%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 314 KNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIANPWEEFAKNFNKGDKVSGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD-IRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW ++ +RD +GDE+ V+++D E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWAGGEEAVRDY-KKGDEIDAIVLQVDPERER 427
Query: 123 ITLSIKQLEEDP 134
I+L +KQ E+DP
Sbjct: 428 ISLGVKQAEDDP 439
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 40/122 (32%), Positives = 64/122 (52%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W ++R GR DYG F+ ++
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGMKQLGEDPWVAIANRYPEGSKLSGRVTNLTDYGCFVEIQ 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ
Sbjct: 298 --EGV---EGLVHVSEMDWTN-KNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 166 (63.5 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 38 KKLVFSEKDA-VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 91
+K + E A + Y S++N DI G+ YG FI + + + GL+H++++
Sbjct: 209 RKAILEESLADAKSLYLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDI 268
Query: 92 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQD 146
SW + + + G V+ K+IKIDRE +I+L +KQLEE P +EK P D
Sbjct: 269 SWSRVSHPSAVFSCGQTVKTKIIKIDRENKKISLGVKQLEESPW-SNIEKKYPVD 322
Score = 166 (63.5 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 43/129 (33%), Positives = 68/129 (52%)
Query: 15 HEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RD 66
H A G + K+I+ + E KK+ K ++ W+ + V+ I G +
Sbjct: 275 HPSAVFSCGQTVKTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSIHKGIVTSIEE 334
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITL 125
YG F+ L G+ GLVHVSEVSW I + G+E++VKV+ ID KSR++L
Sbjct: 335 YGVFVELE--TGI---EGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSIDTAKSRMSL 389
Query: 126 SIKQLEEDP 134
S+K+ +++P
Sbjct: 390 SMKRCQDNP 398
Score = 137 (53.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/133 (29%), Positives = 65/133 (48%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 72
+ G I VKV+ + ++ S K D W ++ + + I + + G F+
Sbjct: 368 MRGEEIQVKVLSIDTAKSRMSLSMKRCQDNPWQAFTLKYPLGSIVSTKIKNITNLGIFVS 427
Query: 73 LRFPDGLYH--LTGLVHVSEVSWDLIQDIR-DILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F D + + GL+ +E+SW L + N GD V K++ I+ KS+I L +KQ
Sbjct: 428 --FQDNTLNDGIEGLIRTTELSWSLSPEAAIKKYNVGDSVEAKILMINPNKSKIDLGVKQ 485
Query: 130 LEEDPLLETLEKV 142
LE DP L+ L+K+
Sbjct: 486 LEYDPFLDLLKKI 498
>UNIPROTKB|Q81VX9 [details] [associations]
symbol:BAS0060 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 143 (55.4 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L P+GL TGLVH+SEV+ + ++DI D L GD+V VKVI ++++ +I L
Sbjct: 18 NFGAFVEL--PEGL---TGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKD-GKIGL 71
Query: 126 SIKQLEE 132
SIK+ +E
Sbjct: 72 SIKKAKE 78
>TIGR_CMR|BA_0060 [details] [associations]
symbol:BA_0060 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 143 (55.4 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L P+GL TGLVH+SEV+ + ++DI D L GD+V VKVI ++++ +I L
Sbjct: 18 NFGAFVEL--PEGL---TGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKD-GKIGL 71
Query: 126 SIKQLEE 132
SIK+ +E
Sbjct: 72 SIKKAKE 78
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 163 (62.4 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 44 EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 102
E+D + V+ I DYGAF+ L DGL H+T +++W ++ +I
Sbjct: 181 ERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEI 234
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145
+N GDE+ VKV+K DR+++R++L +KQL EDP + + K P+
Sbjct: 235 VNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AIAKRYPE 276
Score = 152 (58.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 42/133 (31%), Positives = 70/133 (52%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR--- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 314 KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKS 121
D+G FI L +G + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 374 ITDFGIFIGL---EG--GIDGLVHLSDISWNVPGEEAVREF-KKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDP 134
RI+L IKQ+E DP
Sbjct: 428 RISLGIKQMENDP 440
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + + ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 --EGV---EGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 163 (62.4 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 44 EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 102
E+D + V+ I DYGAF+ L DGL H+T +++W ++ +I
Sbjct: 181 ERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEI 234
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145
+N GDE+ VKV+K DR+++R++L +KQL EDP + + K P+
Sbjct: 235 VNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AIAKRYPE 276
Score = 152 (58.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 42/133 (31%), Positives = 70/133 (52%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR--- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 314 KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKS 121
D+G FI L +G + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 374 ITDFGIFIGL---EG--GIDGLVHLSDISWNVPGEEAVREF-KKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDP 134
RI+L IKQ+E DP
Sbjct: 428 RISLGIKQMENDP 440
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + + ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 --EGV---EGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 162 (62.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 45/136 (33%), Positives = 68/136 (50%)
Query: 15 HEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RD 66
H A G + K+I+ + E +K+ K ++ W R V I G D
Sbjct: 251 HPSAVFSCGQTVRAKIIRIDRENRKISLGVKQLEESPWANVEERYPVGSIHKGTVTSIED 310
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITL 125
YG F+ L G+ GL+HVSEVSW + + G+E+ VKV+ ID K+R++L
Sbjct: 311 YGIFVELE--TGV---EGLIHVSEVSWVRSHLPVNQLFMRGEEIEVKVLSIDATKNRMSL 365
Query: 126 SIKQLEEDPLLETLEK 141
SIK+ +E+P +EK
Sbjct: 366 SIKRCKENPWEAFIEK 381
Score = 143 (55.4 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YG FI + + + GL+H++++SW + + + G VR K+I+IDRE +I+L
Sbjct: 220 YGVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRAKIIRIDRENRKISLG 279
Query: 127 IKQLEEDPLLETLEK 141
+KQLEE P E+
Sbjct: 280 VKQLEESPWANVEER 294
Score = 114 (45.2 bits), Expect = 0.00064, P = 0.00064
Identities = 35/132 (26%), Positives = 62/132 (46%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKY------SSRVNVEDIFVGRDYGAFI 71
+ G I VKV+ + ++ S K + W + S VN + +G + G F+
Sbjct: 344 MRGEEIEVKVLSIDATKNRMSLSIKRCKENPWEAFIEKHPVGSIVNTKVKSIG-NLGMFV 402
Query: 72 HLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
L D + GL+ +E+SW + N GD ++ K++ + +++I L +KQ+
Sbjct: 403 SLTDDDTNSGIEGLIRSTELSWSGSPESALKRYNIGDCLQAKILMVSANRNKIDLGVKQI 462
Query: 131 EEDPLLETLEKV 142
E DP L L +V
Sbjct: 463 EHDPFLGLLRRV 474
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 135 (52.6 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 51 KYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEV 109
+Y++ V V G +DYGAF+ L D GLVH+SE++ ++DI D L GD V
Sbjct: 4 QYTTGVVVTGKVTGIQDYGAFVAL---DA--ETQGLVHISEITNGYVKDIHDFLKVGDTV 58
Query: 110 RVKVIKIDREKSRITLSIK 128
VKV+ ID E +++LS+K
Sbjct: 59 EVKVLSIDEEHRKMSLSLK 77
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 45/128 (35%), Positives = 66/128 (51%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G +SVK+++ ++E K+ K W + V D GR DYGAF+ L
Sbjct: 263 GDKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQKFQVGDRVSGRVVSMTDYGAFVAL- 321
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+G+ GLVHVSE+SW ++ D+L GDEV V+ ID RI+L +KQ + +
Sbjct: 322 -DEGV---EGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLKQAQAN 377
Query: 134 PLLETLEK 141
P + EK
Sbjct: 378 PWTQLEEK 385
Score = 142 (55.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ + DGL +HV+++SW + ++L GD++ VK++K D+EK +I+L
Sbjct: 229 DYGAFVDIGGVDGL------LHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISL 282
Query: 126 SIKQLEEDPLLETLEK 141
+KQ+ DP L +K
Sbjct: 283 GLKQITPDPWLAVEQK 298
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G FI + +G+ GLVHVS++SW I+ ++ +G V+ V+ +D E R++
Sbjct: 401 DFGVFIGV--DEGI---DGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLS 455
Query: 125 LSIKQLEEDP 134
L IKQL DP
Sbjct: 456 LGIKQLTPDP 465
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 38/123 (30%), Positives = 67/123 (54%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V+VI+ N ++L S ++ + ++++ + D+ G +GAF+ L
Sbjct: 336 GQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFVKL- 394
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
G+ GL+H + SWD +D ++GD+++VK+IKID E +I+LS K+L P
Sbjct: 395 --GGI---EGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSAKELNSSP 449
Query: 135 LLE 137
+ E
Sbjct: 450 VQE 452
Score = 152 (58.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 42/127 (33%), Positives = 73/127 (57%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVED---IFVGR--DYGAFIHLR 74
G + VKVI+ ++E K L S K A+ W++ ++V D + V YGAF+ L
Sbjct: 249 GDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDL- 307
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
G + G +H+SE+SWD I++ +D +N+G E+ V+VI+I+ + R+ +S++ L
Sbjct: 308 ---G-NDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSR 363
Query: 134 PLLETLE 140
P E ++
Sbjct: 364 PFDEFMK 370
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 41/129 (31%), Positives = 65/129 (50%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV----NV---EDIFVG-----RDYG 68
+ G VK+I+ +++ + ++ S K + ++ R NV ED+ G YG
Sbjct: 158 IIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYG 217
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+ + DGL VH SE+S+ + + EGD+V VKVIK D+E+ ++LSIK
Sbjct: 218 MFVDVGGVDGL------VHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271
Query: 129 QLEEDPLLE 137
DP E
Sbjct: 272 AALPDPWSE 280
Score = 123 (48.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 36/132 (27%), Positives = 68/132 (51%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I VK+I+ +EE +K+ S K+ + +Y+ V DI G +D+G F+ L
Sbjct: 421 GDKIKVKIIKIDEENQKISLSAKELNSSPVQEYAKIHKVGDIVKGTIRDIKDFGVFVELS 480
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++ L+H ++S ++++++ GD++ ++ ID +K+RI LS+K L
Sbjct: 481 -----KNVDALIHKEDISTSMLENLKI----GDDIEAAIVFIDEKKNRIRLSVKNLVRIK 531
Query: 135 LLETLEKVIPQD 146
E L ++ D
Sbjct: 532 EREVLNEINNDD 543
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 125 (49.1 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L +G TGLVH+SEV+ + ++DI DIL GDEV VKV+ I + +I L
Sbjct: 18 NFGAFVEL---EG--GKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNIG-DDGKIGL 71
Query: 126 SIKQLEEDP 134
SI++ + P
Sbjct: 72 SIRKAVDRP 80
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/124 (28%), Positives = 68/124 (54%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAF 70
G ++VK+++ + E +++ S K V + S+ + D+ G D+GAF
Sbjct: 146 GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+++ DGL VH+S++S + ++ ++L +G +V+VKV+ +D + RI+LSIK
Sbjct: 206 VNVGGVDGL------VHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Query: 131 EEDP 134
+ P
Sbjct: 260 QPGP 263
Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 41/131 (31%), Positives = 70/131 (53%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG---R--DYGAFIHLR 74
G + VKV+ + + +++ S K A W V DI G R +GAF+ +
Sbjct: 235 GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEI- 293
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ-LEED 133
L + GLVHVS+++ +++ ++L G EV+VKV+++ + RI+LSIK+ LEE+
Sbjct: 294 ----LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEEN 349
Query: 134 PLLETLEKVIP 144
+ E + P
Sbjct: 350 NVTEDYSQYEP 360
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 145 (56.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL +HV++++W + +ILN G+ V+V+VIKI+++ RI+L
Sbjct: 208 EYGAFVDLGGVDGL------LHVTDMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISL 261
Query: 126 SIKQLEEDP 134
+KQL+EDP
Sbjct: 262 GMKQLQEDP 270
Score = 144 (55.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 39/122 (31%), Positives = 66/122 (54%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+VI+ N++ ++ K + W+ ++ +E + GR DYGAF+ L
Sbjct: 242 GETVKVQVIKINKDTHRISLGMKQLQEDPWDLVGAKYPLESVHTGRVTNITDYGAFVELE 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P + GLVHVSE+SW +++ I++ EV V V++ID K R++L +KQ
Sbjct: 302 -PG----VEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDGAKRRVSLGLKQTMR 355
Query: 133 DP 134
+P
Sbjct: 356 NP 357
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 144 (55.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 43/127 (33%), Positives = 67/127 (52%)
Query: 8 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDY 67
KE + I E+ K ++S + E+ + V SE K + R V V ++
Sbjct: 167 KEIEAKIIELDKNRNNVVLSRRAWL--EQTQSEVRSEFLNNLQKGTIRKGVVSSIV--NF 222
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAF+ L DGL VHVSE+SW I +++ GDEV V+V+ +D ++ R++LS+
Sbjct: 223 GAFVDLGGVDGL------VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSL 276
Query: 128 KQLEEDP 134
K +EDP
Sbjct: 277 KATQEDP 283
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 36/119 (30%), Positives = 65/119 (54%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++V+V+ + + +++ S K + W ++ + I G+ +GAF+ R
Sbjct: 255 GDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFV--R 312
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+G+ GLVH+SE++ ++ ++ GD+ VKVI ID E+ RI+LS+KQ ED
Sbjct: 313 VEEGI---EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 143 (55.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 31/90 (34%), Positives = 57/90 (63%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
++ + V ++ G+ D+GAF+++ L GLVH+S++S + + ++ ++L EG
Sbjct: 616 TAEIEVGTLYTGKVVRIVDFGAFVNV-----LPGKDGLVHISQISEERVNNVSEVLTEGQ 670
Query: 108 EVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
EV+VKV+++DR+ R+ LSIK+ E P E
Sbjct: 671 EVKVKVLEVDRQ-GRVRLSIKEAMEKPAAE 699
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 142 (55.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 28/66 (42%), Positives = 48/66 (72%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVR 110
+ + DIF G D+G F+ L DG +++GL H SE+S + + +++ + GD V+
Sbjct: 1233 LQIGDIFEGTVTSTTDFGVFVKL---DGTVNVSGLCHHSEISENDVDNVKSLFGTGDRVK 1289
Query: 111 VKVIKIDREKSRITLSIK 128
VK++KID EK +++L +K
Sbjct: 1290 VKILKIDSEKRQLSLGMK 1307
Score = 54 (24.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA 47
G I+ V+++ N+E K+LV + K +
Sbjct: 631 GQIVKVRILDVNKEQKRLVVTLKQS 655
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 36/117 (30%), Positives = 66/117 (56%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWN-KYSSRVNVEDIFVGR----------DYGAFI 71
G ++ +V + E KKL S KD+V + Y + + + D+ G+ +GAFI
Sbjct: 1274 GQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFI 1333
Query: 72 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ DG +++GL H +E++ ++D R + EGD V+ KV+K+DR++ +I+ +K
Sbjct: 1334 VI---DGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISFGLK 1387
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 134 (52.2 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 44/146 (30%), Positives = 80/146 (54%)
Query: 5 HSCKEPQKSIHEIAKGLTGSII------SVKVIQANEEMK-KLVFSEKDAVWNKYS---- 53
++ K PQK I E+ G G+ I + I+ ++ K+ ++ ++ N S
Sbjct: 558 YTMKIPQKKIAEVI-GKGGATIRQLTEETGTTIEIGDDGTIKIAATDGESAANAISRIEQ 616
Query: 54 --SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 106
+ + V I+ G+ D+GAF+++ L GLVH+S++S + + ++ D L+EG
Sbjct: 617 LTAELEVGTIYEGKVVRIVDFGAFVNI-----LPGKDGLVHISQISTERVNNVTDHLSEG 671
Query: 107 DEVRVKVIKIDREKSRITLSIKQLEE 132
EV+VKV+++DR+ R+ LSIK+ E
Sbjct: 672 QEVKVKVLEVDRQ-GRVRLSIKEAME 696
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 127 (49.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + FP GLVH+SE+ + ++++ D+LNEGD+V VK I ID++ +I L
Sbjct: 632 DFGAFVEI-FPG----TDGLVHISELDTERVKNVTDVLNEGDKVLVKCIGIDKQ-GKIKL 685
Query: 126 SIKQ 129
S K+
Sbjct: 686 SRKE 689
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 131 (51.2 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 38/128 (29%), Positives = 69/128 (53%)
Query: 8 KEPQKSIHEIAKGLTGSIISVKVIQANEEMK-KLVFSEKDAVWNKYS-SRVNVEDIFVGR 65
KEP+K + K +TG +++V+ + E+ K V + Y +++V D+ GR
Sbjct: 1383 KEPEKEF-PVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGR 1441
Query: 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
+G FI + G+ GL H+S++S D +++++ G+ VR K++K+D EK
Sbjct: 1442 IRRVEPFGLFIDID-QTGM---VGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEK 1497
Query: 121 SRITLSIK 128
RI+L +K
Sbjct: 1498 KRISLGMK 1505
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 125 (49.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 37/117 (31%), Positives = 65/117 (55%)
Query: 27 SVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
+VK+ +N E K + + +S V V I+ G+ D+GAF+++ L
Sbjct: 593 TVKIASSNGEATKEAIRRIEEI----TSEVEVGRIYNGKVIRIVDFGAFVNI-----LPG 643
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE-EDPLLE 137
GLVH+S++S + + ++ D L EV VKV+++DR+ R+ LSIK+ + ++P E
Sbjct: 644 KDGLVHISQISDERVANVSDHLELNQEVTVKVMEVDRQ-GRVRLSIKEAQTKEPAAE 699
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 125 (49.1 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
++ V V I+ G+ D+GAF+ + L GLVH+S+++ ++ + D L EG
Sbjct: 617 TAEVEVGVIYTGKVARLADFGAFVTI-----LPGKDGLVHISQIADKRVEKVSDYLTEGQ 671
Query: 108 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145
EV+VKV++IDR+ R+ LS+K+ E E V PQ
Sbjct: 672 EVQVKVLEIDRQ-GRVRLSMKEAVETSDAAAAE-VAPQ 707
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 125 (49.1 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
++ V V I+ G+ D+GAF+ + L GLVH+S+++ ++ + D L EG
Sbjct: 617 TAEVEVGVIYTGKVARLADFGAFVTI-----LPGKDGLVHISQIADKRVEKVSDYLTEGQ 671
Query: 108 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145
EV+VKV++IDR+ R+ LS+K+ E E V PQ
Sbjct: 672 EVQVKVLEIDRQ-GRVRLSMKEAVETSDAAAAE-VAPQ 707
>TIGR_CMR|CPS_4965 [details] [associations]
symbol:CPS_4965 "putative transcription accessory protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_271604.1 ProteinModelPortal:Q47UB9 SMR:Q47UB9
STRING:Q47UB9 GeneID:3522134 KEGG:cps:CPS_4965 PATRIC:21472723
BioCyc:CPSY167879:GI48-4966-MONOMER Uniprot:Q47UB9
Length = 796
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ + G+ H GLVH+S ++ I D R+I+ G+ V+VKV+++D + RI+L
Sbjct: 670 NFGAFVDI----GV-HQDGLVHISSITEKFISDPREIVKAGEVVKVKVVEVDIARKRISL 724
Query: 126 SIKQLEEDPLLET 138
+++ LEE +T
Sbjct: 725 TMR-LEEQVSAQT 736
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
Identities = 34/136 (25%), Positives = 65/136 (47%)
Query: 7 CKEPQKSIHEIAKG--LTGSIISVKVIQANEEMKKLVFSEKDAVWNKY-SSRVNVEDIFV 63
C Q S+ A G + KV++ E + +V S + + + R ++D
Sbjct: 143 CPYSQISLRRAANPAEFVGRQLLFKVVEFAERGRNIVLSHRAILEEEERQKREALKDTLK 202
Query: 64 -GRDYGAFIHLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 118
G + P G + + GL+ +SE W +++I D+L+ G++V V +ID
Sbjct: 203 EGTTLTGTVTRLMPFGAFVDIGGVEGLIPISEAGWSRVKEIGDVLSVGEQVTALVKRIDW 262
Query: 119 EKSRITLSIKQLEEDP 134
E ++I+LS++ ++ DP
Sbjct: 263 ENNKISLSLRDVQADP 278
>UNIPROTKB|P46837 [details] [associations]
symbol:yhgF "predicted transcriptional accessory protein"
species:83333 "Escherichia coli K-12" [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006139 EMBL:U18997 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 PIR:B65136 RefSeq:NP_417866.4
RefSeq:YP_492025.1 ProteinModelPortal:P46837 SMR:P46837
DIP:DIP-12337N IntAct:P46837 MINT:MINT-1288997 PRIDE:P46837
EnsemblBacteria:EBESCT00000002880 EnsemblBacteria:EBESCT00000016404
GeneID:12932731 GeneID:947911 KEGG:ecj:Y75_p3769 KEGG:eco:b3407
PATRIC:32122250 EchoBASE:EB2768 EcoGene:EG12932
HOGENOM:HOG000270497 KO:K06959 ProtClustDB:CLSK862831
BioCyc:EcoCyc:G7746-MONOMER BioCyc:ECOL316407:JW3370-MONOMER
Genevestigator:P46837 Uniprot:P46837
Length = 773
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ + G+ H GLVH+S +S ++D ++ GD V+VKV+++D ++ RI L
Sbjct: 663 NFGAFVDI----GV-HQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIAL 717
Query: 126 SIKQLEEDP 134
+++ L+E P
Sbjct: 718 TMR-LDEQP 725
>UNIPROTKB|Q9KNL6 [details] [associations]
symbol:VC_2716 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 PIR:E82042 RefSeq:NP_232343.1
ProteinModelPortal:Q9KNL6 SMR:Q9KNL6 DNASU:2615544 GeneID:2615544
KEGG:vch:VC2716 PATRIC:20084450 ProtClustDB:CLSK2298315
Uniprot:Q9KNL6
Length = 773
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ + G+ H GLVH+S ++ I D R+++ GD V+VKV+++D ++ RI L
Sbjct: 663 NFGAFVDI----GV-HQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIAL 717
Query: 126 SIKQLEEDP 134
S++ L ++P
Sbjct: 718 SMR-LNDEP 725
>TIGR_CMR|VC_2716 [details] [associations]
symbol:VC_2716 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 PIR:E82042
RefSeq:NP_232343.1 ProteinModelPortal:Q9KNL6 SMR:Q9KNL6
DNASU:2615544 GeneID:2615544 KEGG:vch:VC2716 PATRIC:20084450
ProtClustDB:CLSK2298315 Uniprot:Q9KNL6
Length = 773
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ + G+ H GLVH+S ++ I D R+++ GD V+VKV+++D ++ RI L
Sbjct: 663 NFGAFVDI----GV-HQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIAL 717
Query: 126 SIKQLEEDP 134
S++ L ++P
Sbjct: 718 SMR-LNDEP 725
>WB|WBGene00003393 [details] [associations]
symbol:mog-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 118 (46.6 bits), Expect = 0.00061, P = 0.00061
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 43 SEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLT-GLVHVSEVSWDLIQDIRD 101
SE + Y RVN I + +GAFI L +G GLVH+S++ + +Q + D
Sbjct: 228 SEVAEIGKIYDGRVN--SI---QSFGAFITL---EGFRQKQEGLVHISQIRNERVQTVAD 279
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+L G+ V+VKV KI E +I+LS+K+++++
Sbjct: 280 VLKRGENVKVKVNKI--ENGKISLSMKEVDQN 309
>UNIPROTKB|Q09530 [details] [associations]
symbol:mog-5 "Probable pre-mRNA-splicing factor
ATP-dependent RNA helicase mog-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 118 (46.6 bits), Expect = 0.00061, P = 0.00061
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 43 SEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLT-GLVHVSEVSWDLIQDIRD 101
SE + Y RVN I + +GAFI L +G GLVH+S++ + +Q + D
Sbjct: 228 SEVAEIGKIYDGRVN--SI---QSFGAFITL---EGFRQKQEGLVHISQIRNERVQTVAD 279
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+L G+ V+VKV KI E +I+LS+K+++++
Sbjct: 280 VLKRGENVKVKVNKI--ENGKISLSMKEVDQN 309
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 121 (47.7 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 36/124 (29%), Positives = 65/124 (52%)
Query: 9 EPQKSIHEIAKG-LTGSIISVKVIQANEEMKKLV-FSEKDAVWNKYSSRVNVED--IFVG 64
+P ++++ KG + G K I+ + + K+ SE + + N++ + VG
Sbjct: 1188 KPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVG 1247
Query: 65 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYG I + DG ++ GL H SE++ ++ +I + + GD+VR V+ +D EK RI
Sbjct: 1248 -DYGVLIRI---DGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIA 1303
Query: 125 LSIK 128
L +K
Sbjct: 1304 LGLK 1307
Score = 42 (19.8 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 179 QEDGIDDVRITRQGFEKRVVSQDLQ--LWLS 207
+E +D++ T FE++++S LW+S
Sbjct: 1415 EEKDLDEIPSTAADFERQLLSSPNSSLLWIS 1445
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 259 245 0.00099 113 3 11 22 0.46 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 609 (65 KB)
Total size of DFA: 191 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.07u 0.10s 22.17t Elapsed: 00:00:00
Total cpu time: 22.07u 0.10s 22.17t Elapsed: 00:00:00
Start: Sat May 11 11:05:53 2013 End: Sat May 11 11:05:53 2013