Query 024995
Match_columns 259
No_of_seqs 225 out of 1749
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 99.9 1.1E-25 3.7E-30 201.5 11.1 174 21-254 41-228 (285)
2 1kl9_A Eukaryotic translation 99.8 1.3E-22 4.5E-27 170.4 -0.7 117 56-192 13-136 (182)
3 2a19_A EIF-2- alpha, eukaryoti 99.7 6.3E-19 2.2E-23 147.2 3.8 100 57-168 14-119 (175)
4 2khi_A 30S ribosomal protein S 99.7 1.2E-17 4.1E-22 130.3 6.5 87 48-139 20-112 (115)
5 3go5_A Multidomain protein wit 99.7 9.7E-17 3.3E-21 143.5 10.9 138 57-259 5-154 (285)
6 1q8k_A Eukaryotic translation 99.7 1.2E-17 3.9E-22 150.7 3.2 104 56-175 11-120 (308)
7 3aev_A Translation initiation 99.6 1.4E-16 4.9E-21 141.6 3.9 102 55-168 8-115 (275)
8 1luz_A Protein K3, protein K2; 99.6 8.8E-16 3E-20 114.2 7.2 76 54-133 7-87 (88)
9 2cqo_A Nucleolar protein of 40 99.6 3.5E-16 1.2E-20 122.7 5.3 87 48-138 12-105 (119)
10 2k4k_A GSP13, general stress p 99.6 1.3E-15 4.5E-20 121.2 8.4 78 54-136 3-85 (130)
11 2khj_A 30S ribosomal protein S 99.6 1.1E-15 3.9E-20 117.8 6.5 86 42-132 12-105 (109)
12 2eqs_A ATP-dependent RNA helic 99.6 3.1E-15 1.1E-19 114.3 8.3 81 53-137 7-93 (103)
13 2khi_A 30S ribosomal protein S 99.6 6.9E-16 2.4E-20 120.2 2.0 100 125-255 11-115 (115)
14 2k52_A Uncharacterized protein 99.6 1.9E-14 6.5E-19 104.9 9.3 69 55-132 2-75 (80)
15 3cw2_C Translation initiation 99.5 5.9E-15 2E-19 130.7 1.0 103 54-168 7-115 (266)
16 1kl9_A Eukaryotic translation 99.4 8E-14 2.7E-18 116.9 4.4 85 153-258 15-104 (182)
17 2a19_A EIF-2- alpha, eukaryoti 99.4 3E-13 1E-17 112.7 4.8 85 153-258 15-104 (175)
18 4aid_A Polyribonucleotide nucl 99.4 6.7E-14 2.3E-18 138.5 0.0 101 31-138 603-716 (726)
19 3cdi_A Polynucleotide phosphor 99.3 1.8E-13 6.2E-18 135.7 0.0 101 31-138 593-706 (723)
20 1e3p_A Guanosine pentaphosphat 99.3 7.2E-14 2.5E-18 139.1 -5.2 101 31-138 631-750 (757)
21 2khj_A 30S ribosomal protein S 99.3 1.6E-12 5.5E-17 100.0 3.1 90 124-245 11-105 (109)
22 4ayb_E DNA-directed RNA polyme 99.2 3.5E-12 1.2E-16 106.5 3.8 82 49-136 72-175 (180)
23 1wi5_A RRP5 protein homolog; S 99.2 2.4E-11 8.2E-16 94.8 5.5 76 53-132 16-97 (119)
24 1go3_E DNA-directed RNA polyme 99.2 5.3E-11 1.8E-15 99.8 7.6 80 51-136 74-176 (187)
25 3psi_A Transcription elongatio 99.1 4.6E-11 1.6E-15 123.9 7.2 74 53-131 897-976 (1219)
26 1q8k_A Eukaryotic translation 99.1 2.6E-11 9.1E-16 109.2 4.5 85 153-258 13-102 (308)
27 3aev_A Translation initiation 99.1 4E-11 1.4E-15 106.5 4.5 85 153-258 11-100 (275)
28 3bzc_A TEX; helix-turn-helix, 99.1 3.4E-11 1.2E-15 120.2 3.4 74 53-131 649-727 (785)
29 1y14_B B16, RPB7, DNA-directed 99.0 2.3E-10 7.9E-15 94.7 6.1 114 2-121 14-155 (171)
30 1e3p_A Guanosine pentaphosphat 99.0 8E-12 2.8E-16 124.4 -3.6 122 66-257 626-756 (757)
31 3psf_A Transcription elongatio 99.0 2.6E-11 8.9E-16 124.0 0.0 74 53-131 900-979 (1030)
32 2b8k_G B16, DNA-directed RNA p 99.0 1.5E-10 5.3E-15 99.2 4.7 128 2-136 14-172 (215)
33 1hh2_P NUSA, N utilization sub 99.0 5.5E-11 1.9E-15 108.4 1.5 98 18-128 85-199 (344)
34 2nn6_I 3'-5' exoribonuclease C 99.0 5.2E-10 1.8E-14 95.6 7.2 77 54-130 77-163 (209)
35 2k4k_A GSP13, general stress p 99.0 2E-10 6.9E-15 91.1 4.1 75 152-249 6-85 (130)
36 3m7n_A Putative uncharacterize 99.0 1.2E-09 4.2E-14 91.1 7.8 70 55-130 55-134 (179)
37 2eqs_A ATP-dependent RNA helic 99.0 2.2E-10 7.4E-15 87.3 2.9 78 153-252 12-95 (103)
38 2cqo_A Nucleolar protein of 40 98.9 9.4E-11 3.2E-15 91.6 0.3 91 130-252 8-106 (119)
39 1luz_A Protein K3, protein K2; 98.9 2E-10 6.8E-15 85.1 1.6 72 152-246 10-87 (88)
40 2k52_A Uncharacterized protein 98.9 8.6E-10 2.9E-14 80.0 4.1 67 152-245 4-75 (80)
41 3cw2_C Translation initiation 98.9 2.8E-10 9.5E-15 100.7 0.7 86 152-258 10-100 (266)
42 2c35_B Human RPB7, DNA-directe 98.9 3.1E-09 1.1E-13 87.9 6.9 70 53-129 76-165 (172)
43 3h0g_G DNA-directed RNA polyme 98.7 4E-09 1.4E-13 87.4 3.3 68 49-122 75-157 (172)
44 2je6_I RRP4, exosome complex R 98.7 9.7E-09 3.3E-13 90.0 5.6 71 54-130 70-148 (251)
45 3cdi_A Polynucleotide phosphor 98.7 1.4E-09 5E-14 107.8 0.0 77 153-253 627-708 (723)
46 2z0s_A Probable exosome comple 98.7 1.1E-08 3.9E-13 88.8 5.0 70 54-129 62-140 (235)
47 2ba0_A Archeal exosome RNA bin 98.7 4.5E-08 1.6E-12 84.6 7.7 70 55-130 54-129 (229)
48 4aid_A Polyribonucleotide nucl 98.6 3.4E-09 1.1E-13 105.0 0.0 82 152-257 636-722 (726)
49 1wi5_A RRP5 protein homolog; S 98.5 3.9E-08 1.3E-12 76.5 2.2 72 152-243 20-95 (119)
50 1go3_E DNA-directed RNA polyme 98.3 5E-07 1.7E-11 75.4 4.4 89 153-254 81-181 (187)
51 2bh8_A 1B11; transcription, mo 98.3 9.1E-07 3.1E-11 66.9 5.3 78 56-194 11-97 (101)
52 2id0_A Exoribonuclease 2; RNAs 98.3 1.3E-06 4.3E-11 86.0 7.3 70 55-128 555-643 (644)
53 3psi_A Transcription elongatio 98.2 6.5E-07 2.2E-11 93.1 5.3 71 150-242 899-974 (1219)
54 4ayb_E DNA-directed RNA polyme 98.2 8.6E-07 3E-11 73.6 3.2 87 153-252 81-178 (180)
55 3psf_A Transcription elongatio 98.1 4.1E-07 1.4E-11 93.3 0.0 70 151-242 903-977 (1030)
56 3ayh_B DNA-directed RNA polyme 98.1 5E-06 1.7E-10 70.4 6.1 62 53-120 76-161 (203)
57 1k0r_A NUSA; two component arr 98.1 4.9E-06 1.7E-10 76.1 6.2 79 51-137 121-210 (366)
58 2bx2_L Ribonuclease E, RNAse E 98.0 4.9E-06 1.7E-10 79.6 6.2 73 53-130 40-128 (517)
59 3bzc_A TEX; helix-turn-helix, 98.0 1.8E-06 6.2E-11 86.3 2.7 69 151-242 652-725 (785)
60 2bh8_A 1B11; transcription, mo 97.9 1.2E-05 4E-10 60.7 5.5 70 22-96 13-99 (101)
61 2vnu_D Exosome complex exonucl 97.9 9E-06 3.1E-10 81.4 5.5 65 60-128 671-760 (760)
62 2wp8_J Exosome complex exonucl 97.9 9.7E-06 3.3E-10 83.1 5.0 66 59-128 887-977 (977)
63 2ckz_B C25, DNA-directed RNA p 97.8 1.5E-05 5.2E-10 68.2 5.2 115 2-121 14-158 (218)
64 2nn6_I 3'-5' exoribonuclease C 97.8 1.1E-05 3.7E-10 68.7 3.7 73 152-243 80-163 (209)
65 2b8k_G B16, DNA-directed RNA p 97.7 2E-05 6.8E-10 67.3 3.3 87 153-254 83-177 (215)
66 2nn6_H Exosome complex exonucl 97.6 2.5E-05 8.5E-10 70.2 3.7 69 55-129 92-175 (308)
67 1y14_B B16, RPB7, DNA-directed 97.6 4E-05 1.4E-09 63.0 4.5 73 153-242 83-165 (171)
68 1hh2_P NUSA, N utilization sub 97.6 7.6E-06 2.6E-10 74.5 0.1 107 101-241 85-199 (344)
69 3m7n_A Putative uncharacterize 97.6 4.8E-05 1.6E-09 63.1 4.2 64 154-242 58-133 (179)
70 2ja9_A Exosome complex exonucl 97.6 0.00011 3.6E-09 60.8 6.1 66 55-127 4-75 (175)
71 2asb_A Transcription elongatio 97.4 0.0005 1.7E-08 59.7 8.3 66 56-129 5-81 (251)
72 2c35_B Human RPB7, DNA-directe 97.4 0.00013 4.3E-09 59.9 4.2 76 153-242 81-165 (172)
73 3h0g_G DNA-directed RNA polyme 97.2 0.00019 6.4E-09 59.1 3.0 72 154-242 85-166 (172)
74 2je6_I RRP4, exosome complex R 97.1 0.00025 8.4E-09 61.9 3.7 70 152-242 73-147 (251)
75 2z0s_A Probable exosome comple 97.1 0.00031 1.1E-08 60.6 3.6 71 152-242 65-140 (235)
76 2ba0_A Archeal exosome RNA bin 96.8 0.001 3.4E-08 57.2 4.2 68 152-242 56-128 (229)
77 2id0_A Exoribonuclease 2; RNAs 96.4 0.0022 7.7E-08 62.9 4.8 74 153-240 558-642 (644)
78 2vnu_D Exosome complex exonucl 95.7 0.0041 1.4E-07 62.2 2.7 74 155-241 671-760 (760)
79 2nn6_G Exosome complex exonucl 95.6 0.01 3.5E-07 52.6 4.5 67 55-128 124-195 (289)
80 1k0r_A NUSA; two component arr 95.4 0.017 5.8E-07 52.8 5.5 71 152-251 129-211 (366)
81 2wp8_J Exosome complex exonucl 95.2 0.0076 2.6E-07 61.8 2.7 75 154-241 887-977 (977)
82 3ayh_B DNA-directed RNA polyme 95.2 0.026 8.8E-07 47.4 5.6 72 154-232 82-160 (203)
83 2ckz_B C25, DNA-directed RNA p 95.1 0.02 6.7E-07 48.7 4.4 72 154-234 82-158 (218)
84 2r7d_A Ribonuclease II family 94.9 0.036 1.2E-06 52.3 6.3 60 56-127 401-460 (469)
85 2bx2_L Ribonuclease E, RNAse E 93.6 0.043 1.5E-06 52.4 3.7 58 153-226 45-107 (517)
86 2nn6_H Exosome complex exonucl 93.4 0.032 1.1E-06 49.9 2.3 75 152-242 94-175 (308)
87 2asb_A Transcription elongatio 89.3 0.37 1.3E-05 41.6 4.6 62 152-242 6-81 (251)
88 1jjg_A M156R; beta barrel, S1 88.6 1 3.4E-05 32.8 5.7 62 53-118 27-93 (102)
89 2rf4_A DNA-directed RNA polyme 72.2 15 0.00051 30.5 8.1 62 53-120 124-203 (214)
90 2ja9_A Exosome complex exonucl 70.8 4.7 0.00016 32.7 4.4 31 152-188 6-37 (175)
91 1h95_A CSD, Y-box binding prot 68.7 14 0.00049 25.6 6.1 45 66-115 21-65 (79)
92 3d0f_A Penicillin-binding 1 tr 61.6 15 0.00052 26.7 5.4 53 55-112 30-93 (106)
93 2yty_A Cold shock domain-conta 55.9 12 0.00042 26.6 3.9 48 57-114 14-67 (88)
94 2k5n_A Putative cold-shock pro 55.5 47 0.0016 22.7 7.7 39 81-128 25-63 (74)
95 3cam_A Cold-shock domain famil 55.0 34 0.0012 22.9 5.8 32 81-116 24-55 (67)
96 3aqq_A Calcium-regulated heat 54.2 31 0.0011 27.1 6.2 48 58-116 59-114 (147)
97 1wfq_A UNR protein; beta-barre 53.8 56 0.0019 23.1 8.6 50 56-115 13-68 (89)
98 3i2z_B RNA chaperone, negative 53.5 24 0.0008 23.9 4.8 42 66-116 18-59 (71)
99 1c9o_A CSPB, cold-shock protei 51.1 30 0.001 23.0 5.0 32 81-116 23-54 (66)
100 3our_B EIIA, phosphotransferas 47.3 23 0.0008 28.9 4.6 28 157-188 78-105 (183)
101 2ytx_A Cold shock domain-conta 42.9 41 0.0014 24.3 5.0 46 59-114 16-67 (97)
102 3a0j_A Cold shock protein; OB- 42.8 38 0.0013 23.0 4.5 32 81-116 23-54 (73)
103 3ulj_A LIN28B, DNA-binding pro 42.4 56 0.0019 23.3 5.6 32 81-116 38-69 (90)
104 3ts2_A Protein LIN-28 homolog 37.3 91 0.0031 24.1 6.6 42 81-128 39-80 (148)
105 2lss_A Cold shock-like protein 42.1 7.7 0.00026 26.4 0.0 31 81-115 27-57 (70)
106 2kcm_A Cold shock domain famil 34.7 81 0.0028 21.5 5.2 42 81-128 22-64 (74)
107 2jpp_A Translational repressor 34.0 42 0.0014 23.0 3.5 32 99-132 8-39 (70)
108 2bti_A Carbon storage regulato 33.8 43 0.0015 22.4 3.5 33 98-132 9-41 (63)
109 1vpz_A Carbon storage regulato 31.1 41 0.0014 23.2 3.1 33 98-132 19-51 (73)
110 3kf6_B Protein TEN1; OB fold, 27.1 1.4E+02 0.0046 22.0 5.5 41 21-65 19-69 (105)
111 1g6p_A Cold shock protein TMCS 26.3 29 0.001 23.0 1.7 30 81-114 22-51 (66)
112 3i4o_A Translation initiation 24.0 40 0.0014 23.5 2.1 60 59-127 18-78 (79)
113 1ax3_A Iiaglc, glucose permeas 22.6 1.4E+02 0.0049 23.5 5.4 51 157-226 56-106 (162)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.92 E-value=1.1e-25 Score=201.54 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=141.9
Q ss_pred CCCCEEEEEEEEEeCCCCEEEEEechhhHhhhccCCCCCCEEEEE------eeeEEEEEccCCCCc-cEEEEEEceecCc
Q 024995 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR------DYGAFIHLRFPDGLY-HLTGLVHVSEVSW 93 (259)
Q Consensus 21 ~vG~~v~~~Vl~id~~~~~v~lS~k~~~~~~~~~~l~~G~iv~G~------~~G~fV~l~~~~g~~-gi~glv~isels~ 93 (259)
.+||+|+|+|+ .|.+ +++++|.+.+ .+++|+++.|+ +|||||+++ . +.+||||+||++|
T Consensus 41 ~vGdevev~v~-~d~~-~r~iat~~~p-------~~~~G~~~~g~V~~v~~~~GaFVdiG-----~~~~d~lvp~sel~~ 106 (285)
T 3go5_A 41 TVGDTVKGFAY-TDMK-QKLRLTTLEV-------TATQDQFGWGRVTEVRKDLGVFVDTG-----LPDKEIVVSLDILPE 106 (285)
T ss_dssp CTTSEEEEEEE-ECTT-SCEEEECSCC-------CSCSSSCEEEEEEEEETTTEEEEECS-----CTTCCEEEEGGGSCS
T ss_pred ccCCEEEEEEE-ECCC-CCEEEecccc-------cccCCCEEEEEEEEEccCceEEEEEC-----CCCcEEEEEHHHCCc
Confidence 59999999986 5754 6777887654 57899999998 399999997 4 5899999999998
Q ss_pred ccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEecc-ccCcchHhhhhhcCCCCccccCCCCccccceeeeccCCCccc
Q 024995 94 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL-EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGA 172 (259)
Q Consensus 94 ~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~-~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~~~G~~~~ 172 (259)
.+. ..+++||.+.|+ +++|+ ++||.+|+|+. ..+||....++ ++ +|+.++|+|+++++||
T Consensus 107 ~~~----~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~-~~--------~G~~V~g~V~~i~~~G---- 167 (285)
T 3go5_A 107 LKE----LWPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYN-NM--------QNQNWPAIVYRLKLSG---- 167 (285)
T ss_dssp SGG----GSCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCS-CC--------TTCEEEEEEEEEETTE----
T ss_pred ccc----cccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhh-CC--------CCCEEEEEEEEEeCCc----
Confidence 653 346899999766 59998 79999999976 46788654333 34 3677999999999999
Q ss_pred eee-eecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----EEEecccchhhhhhchhhhh
Q 024995 173 IFE-ELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----QEIQLSHSLIRKASKRHCNE 246 (259)
Q Consensus 173 ~fv-~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~~v~~~~~~i~ls~k~~~~~ 246 (259)
+|+ .+ ++|+.||+ +|+++ . .+++||+| ++|+.+.+||+||+|++...
T Consensus 168 ~fV~~i--~~g~~Glih~SEl~---------------------~----~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~ 220 (285)
T 3go5_A 168 TFVYLP--ENNMLGFIHPSERY---------------------A----EPRLGQVLDARVIGFREVDRTLNLSLKPRSFE 220 (285)
T ss_dssp EEEEET--TTTEEEEECGGGCS---------------------S----CCCTTCEEEEEEEEEETTTTEEEEECSCCCCC
T ss_pred EEEEEe--CCCeEEEEEHHHcc---------------------c----cCCCCCEEEEEEEEEECCCCeEEEEeChhhhh
Confidence 998 88 89999999 66654 1 24899998 79999999999999999888
Q ss_pred hhHHhhhh
Q 024995 247 YWNVFHET 254 (259)
Q Consensus 247 p~~~~~~~ 254 (259)
+++..+++
T Consensus 221 ~~~~~a~~ 228 (285)
T 3go5_A 221 MLENDAQM 228 (285)
T ss_dssp CCCHHHHH
T ss_pred ccchHHHH
Confidence 88876654
No 2
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.84 E-value=1.3e-22 Score=170.39 Aligned_cols=117 Identities=23% Similarity=0.332 Sum_probs=91.4
Q ss_pred CCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEecc
Q 024995 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (259)
Q Consensus 56 l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~ 130 (259)
+++|+++.|+ +||+||+|.+. .|++||||+|+|+|.++.++++.|++||.|+|+|+++|.+++||.||+|++
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~---~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~ 89 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEY---NNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRV 89 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTT---TTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccC---CCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4899999999 99999999311 279999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHhhhhhcCCCCccccCCCCccccceeeecc-CCCccceeeeecccCCeeEEE-Ecccc
Q 024995 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP-LPGLGAIFEELLQEDGIDDVR-ITRQG 192 (259)
Q Consensus 131 ~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~~-~G~~~~~fv~l~~~~gv~gl~-~s~~~ 192 (259)
.++||....++ ++. |+.++|+|.++++ || ++| ++|++||+ .|+.+
T Consensus 90 ~~~p~~~~~~~-~~~--------g~~v~g~v~~i~~~~g------v~l--~~giegl~h~s~~~ 136 (182)
T 1kl9_A 90 SPEEAIKCEDK-FTK--------SKTVYSILRHVAEVLE------YTK--DEQLESLFQRTAWV 136 (182)
T ss_dssp CHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHTT------CCS--HHHHHHHHHHTHHH
T ss_pred CcChHHHHHHh-ccC--------CCEEEEEEEEchhhcC------Ccc--cCChhheEEeeecc
Confidence 99999876665 454 5559999999998 99 667 89999998 67655
No 3
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.74 E-value=6.3e-19 Score=147.17 Aligned_cols=100 Identities=23% Similarity=0.383 Sum_probs=81.4
Q ss_pred CCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEeccc
Q 024995 57 NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (259)
Q Consensus 57 ~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~ 131 (259)
++|+++.|+ +||+||+|..+ .|++||||+|+|+|.++.++.+.|++||.|+|+|+++|+++++|.||+|++.
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~---~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~ 90 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEY---DNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVS 90 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTT---TTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCEEEEEEEEEecceEEEEEcCC---CCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecC
Confidence 489999999 89999999310 2799999999999999999999999999999999999999999999999999
Q ss_pred cCcchHhhhhhcCCCCccccCCCCccccceeeec-cCC
Q 024995 132 EDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE-PLP 168 (259)
Q Consensus 132 ~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~-~~G 168 (259)
++||....++ ++. |+.+.|+|.+++ +||
T Consensus 91 ~~~~~~~~~~-~~~--------g~~v~g~V~~i~~~~G 119 (175)
T 2a19_A 91 SEDIIKCEEK-YQK--------SKTVHSILRYCAEKFQ 119 (175)
T ss_dssp HHHHHHHHHH-HHH--------HHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHh-ccC--------CCcceEEEEEchhhcC
Confidence 9999877666 454 555999999999 788
No 4
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.70 E-value=1.2e-17 Score=130.26 Aligned_cols=87 Identities=36% Similarity=0.620 Sum_probs=78.7
Q ss_pred hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcc-cccChhhhcCCCCeEEEEEEEEeCCCC
Q 024995 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKS 121 (259)
Q Consensus 48 ~~~~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~-~~~~~~~~~~~Gd~V~vkVl~id~~~~ 121 (259)
+|+.+...+++|+++.|+ +||+||+|+ .+++||||+|++++. +..++.+.|++||.|+|+|+++|.+++
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~-----~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~ 94 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE-----EGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 94 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECS-----TTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTT
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEEC-----CCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCC
Confidence 477777889999999999 899999998 489999999999984 778899999999999999999999899
Q ss_pred eeEEEEeccccCcchHhh
Q 024995 122 RITLSIKQLEEDPLLETL 139 (259)
Q Consensus 122 ri~lS~K~~~~~p~~~~~ 139 (259)
||.||+|++.++||..+.
T Consensus 95 rI~lslk~~~~~p~~~~~ 112 (115)
T 2khi_A 95 RISLGLKQCKANPWQQFA 112 (115)
T ss_dssp EEEECCCCCCSSCCCCCC
T ss_pred EEEEEEEecCcCHHHHHH
Confidence 999999999999997543
No 5
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.69 E-value=9.7e-17 Score=143.49 Aligned_cols=138 Identities=17% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEeccc
Q 024995 57 NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (259)
Q Consensus 57 ~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~ 131 (259)
.+|++++|+ +||+||+++ |.+||||.++++. ++||+|+|.|. .|. .+|+.+|.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~------g~egllp~se~~~----------~vGdevev~v~-~d~-~~r~iat~---- 62 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD------GQTYALAKEEGQH----------TVGDTVKGFAY-TDM-KQKLRLTT---- 62 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET------TEEEEEEGGGCCC----------CTTSEEEEEEE-ECT-TSCEEEEC----
T ss_pred cCCCEEEEEEEEEECCEEEEEcC------CeEEEEEHHHCcc----------ccCCEEEEEEE-ECC-CCCEEEec----
Confidence 579999998 899999996 7999999999942 78999999997 575 56777764
Q ss_pred cCcchHhhhhhcCCCCccccCCCCccccceeeec-cCCCccceeeeecccC-CeeEEE-Eccccccccccchhhhhhccc
Q 024995 132 EDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE-PLPGLGAIFEELLQED-GIDDVR-ITRQGFEKRVVSQDLQLWLSN 208 (259)
Q Consensus 132 ~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~-~~G~~~~~fv~l~~~~-gv~gl~-~s~~~~~~~~~~~~~~~~~~~ 208 (259)
.+|| +++ |+.+.|+|++++ +|| +|+++ .. |++||+ .|+++ |...
T Consensus 63 ~~p~-------~~~--------G~~~~g~V~~v~~~~G----aFVdi--G~~~~d~lvp~sel~------------~~~~ 109 (285)
T 3go5_A 63 LEVT-------ATQ--------DQFGWGRVTEVRKDLG----VFVDT--GLPDKEIVVSLDILP------------ELKE 109 (285)
T ss_dssp SCCC-------SCS--------SSCEEEEEEEEETTTE----EEEEC--SCTTCCEEEEGGGSC------------SSGG
T ss_pred cccc-------ccC--------CCEEEEEEEEEccCce----EEEEE--CCCCcEEEEEHHHCC------------cccc
Confidence 3565 233 666999999999 899 99988 54 799999 57766 3211
Q ss_pred CCCCCcceeeeccCCCee---EEEecccchhhhhhchh-hhhhhHHhhhhcccCC
Q 024995 209 APPSGKKFTLLARAGRQV---QEIQLSHSLIRKASKRH-CNEYWNVFHETAIVNN 259 (259)
Q Consensus 209 ~~~~~~~~~~~~r~G~~V---~~v~~~~~~i~ls~k~~-~~~p~~~~~~~~~~~~ 259 (259)
. .+++||.| +++|. ++||++|+|++ ..+||+.+.++|++|.
T Consensus 110 -----~----~~~~Gd~v~v~l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~ 154 (285)
T 3go5_A 110 -----L----WPKKGDQLYIRLEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQ 154 (285)
T ss_dssp -----G----SCCTTCEEEEEEEECT-TSCEEEEECCHHHHHHHCCCCCSCCTTC
T ss_pred -----c----ccCCCCEEEEEEEECC-CCcEEEEehhhhhcchhhhhhhhCCCCC
Confidence 0 23789988 78888 68999999987 5699999999999884
No 6
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.67 E-value=1.2e-17 Score=150.68 Aligned_cols=104 Identities=27% Similarity=0.425 Sum_probs=92.1
Q ss_pred CCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEecc
Q 024995 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (259)
Q Consensus 56 l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~ 130 (259)
+++|+++.|+ +||+||+|++++ +++||||+|+++|.++.++.+.|++||.|.|+|+++|+++++|.||+|++
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~---gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYN---NIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTT---SCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCC---CeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 5699999999 899999996211 79999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHhhhhhcCCCCccccCCCCccccceeeecc-CCCccceee
Q 024995 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP-LPGLGAIFE 175 (259)
Q Consensus 131 ~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~~-~G~~~~~fv 175 (259)
.++||....+++ +. |+.+.|+|.++.+ || +|+
T Consensus 88 ~~~p~~~~~~~~-~~--------G~~v~G~V~~v~~~~G----~fi 120 (308)
T 1q8k_A 88 SPEEAIKCEDKF-TK--------SKTVYSILRHVAEVLE----YTK 120 (308)
T ss_dssp CHHHHHHHHHHH-HH--------HHHHHHHHHHHHHHTT----CCS
T ss_pred ccChHHHHHHHc-cC--------CCeeEEEEEEcccccC----Ccc
Confidence 999998776654 43 5669999999999 79 763
No 7
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.62 E-value=1.4e-16 Score=141.64 Aligned_cols=102 Identities=26% Similarity=0.420 Sum_probs=90.3
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEec
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~ 129 (259)
.+++|+++.|+ +||+||+|+.++ |++||||+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|+
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~---gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~ 84 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYP---GKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRR 84 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTST---TCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCC---CeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 34689999999 999999996211 7999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHhhhhhcCCCCccccCCCCccccceeeec-cCC
Q 024995 130 LEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE-PLP 168 (259)
Q Consensus 130 ~~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~-~~G 168 (259)
+.++||....+++ +. |+.+.|.|.++. +||
T Consensus 85 ~~~~~~~~~~~~~-~~--------g~~v~g~v~~v~~~~G 115 (275)
T 3aev_A 85 VTQQQRKAKLQEF-KR--------AQKAENLLRLAAEKLG 115 (275)
T ss_dssp CCHHHHHHHHHHH-HH--------HHHHHHHHHHHHHHHT
T ss_pred cCcchhHHHHHhc-cC--------CCeEEEEEEEchhhcC
Confidence 9999998766654 43 566999999999 888
No 8
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.61 E-value=8.8e-16 Score=114.21 Aligned_cols=76 Identities=33% Similarity=0.453 Sum_probs=68.5
Q ss_pred cCCCCCCEEEEE----eeeEEEEEccCCCCccEEEEEEce-ecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 54 SRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 54 ~~l~~G~iv~G~----~~G~fV~l~~~~g~~gi~glv~is-els~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
...++|+++.|+ +||+||+|.++ .|++||||+| +++++++.++++.+ +||.|+|+|+++|.+++||.||+|
T Consensus 7 ~~~~vG~~~~G~V~v~~fG~FVel~~~---~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 7 SLPNAGDVIKGRVYEKDYALYIYLFDY---PHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEETTC---TTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEccEEEEEECCC---CCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 457899999998 99999999631 1699999999 99999999999999 999999999999999999999999
Q ss_pred ccccC
Q 024995 129 QLEED 133 (259)
Q Consensus 129 ~~~~~ 133 (259)
++.++
T Consensus 83 ~~~~~ 87 (88)
T 1luz_A 83 RMCRH 87 (88)
T ss_dssp EECSC
T ss_pred ecCCC
Confidence 98765
No 9
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=122.72 Aligned_cols=87 Identities=28% Similarity=0.389 Sum_probs=77.4
Q ss_pred hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCC--
Q 024995 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK-- 120 (259)
Q Consensus 48 ~~~~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~-- 120 (259)
.|+.+...+++|++|.|+ +||+||+|++ .+.+||||++++++.++.++.+.|++||.|+|+|+++|.++
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g----~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~ 87 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPG----CRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDR 87 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTT----CSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSC
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECC----CcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccC
Confidence 366677789999999999 9999999962 24699999999999999999999999999999999999854
Q ss_pred CeeEEEEeccccCcchHh
Q 024995 121 SRITLSIKQLEEDPLLET 138 (259)
Q Consensus 121 ~ri~lS~K~~~~~p~~~~ 138 (259)
++|.||+|++.++||...
T Consensus 88 ~~i~LSlk~~~~~~~~~~ 105 (119)
T 2cqo_A 88 IKVSLSMKVVNQGTGKDL 105 (119)
T ss_dssp EEEEEESTTBCSSSCCBS
T ss_pred ceEEEEEeecccCCcccc
Confidence 699999999999999653
No 10
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.61 E-value=1.3e-15 Score=121.15 Aligned_cols=78 Identities=41% Similarity=0.747 Sum_probs=73.5
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 54 ~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
..+++|+++.|+ +||+||+|+ .+++||||+|++++.++.++.+.|++||.|.|+|+++|.++++|.||+|
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~-----~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALD-----EETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEE-----TTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEEC-----CCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 478999999999 899999997 4899999999999999999999999999999999999998999999999
Q ss_pred ccccCcch
Q 024995 129 QLEEDPLL 136 (259)
Q Consensus 129 ~~~~~p~~ 136 (259)
++.++||.
T Consensus 78 ~~~~~p~~ 85 (130)
T 2k4k_A 78 ATQAAPEK 85 (130)
T ss_dssp HHHHSCCC
T ss_pred ecccCccc
Confidence 99999974
No 11
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.59 E-value=1.1e-15 Score=117.83 Aligned_cols=86 Identities=28% Similarity=0.412 Sum_probs=74.8
Q ss_pred EEechh---hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEE
Q 024995 42 FSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113 (259)
Q Consensus 42 lS~k~~---~~~~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkV 113 (259)
-|.|+. +|+.+...+++|+++.|+ +||+||+|+ .+++||||++++++.++.++.+.|++||.|+|+|
T Consensus 12 ~~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~-----~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V 86 (109)
T 2khj_A 12 SGLVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELA-----DGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 86 (109)
T ss_dssp ---------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECS-----TTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEE
T ss_pred cchhhcccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEEC-----CCCEEEEEHHHcCcccccChhhccCCCCEEEEEE
Confidence 355554 588889999999999999 899999998 4899999999999999999999999999999999
Q ss_pred EEEeCCCCeeEEEEecccc
Q 024995 114 IKIDREKSRITLSIKQLEE 132 (259)
Q Consensus 114 l~id~~~~ri~lS~K~~~~ 132 (259)
+++|.++++|.||+|++.+
T Consensus 87 ~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 87 TGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp EEEETTTTEEEEETTSSSS
T ss_pred EEEECCCCEEEEEEeecCh
Confidence 9999988899999998754
No 12
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=114.30 Aligned_cols=81 Identities=26% Similarity=0.553 Sum_probs=71.4
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceec-CcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEE
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isel-s~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS 126 (259)
...+++|+++.|+ +||+||+|++.+ .+++||||+|++ ++.++.++.+.|++||.|+|+|+++|. +||.||
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~--~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LS 82 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLR--KRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLS 82 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSS--SCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCC--CCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEE
Confidence 4578999999999 899999997311 069999999999 667888999999999999999999996 699999
Q ss_pred EeccccCcchH
Q 024995 127 IKQLEEDPLLE 137 (259)
Q Consensus 127 ~K~~~~~p~~~ 137 (259)
+|++.++||..
T Consensus 83 lk~~~~~~~~~ 93 (103)
T 2eqs_A 83 MKDVDQETGED 93 (103)
T ss_dssp STTBCTTTCCB
T ss_pred EeecccCCchh
Confidence 99999999964
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.55 E-value=6.9e-16 Score=120.21 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=70.7
Q ss_pred EEEeccccCcchHhhhhhcCCCCccccCCCCccccceeeeccCCCccceeeeecccCCeeEEE-Eccccccccccchhhh
Q 024995 125 LSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQ 203 (259)
Q Consensus 125 lS~K~~~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~ 203 (259)
-|+|++..+||...... +. +|+++.|+|+++++|| +||+| .+|++||+ +|+++.+.
T Consensus 11 ~~~k~~~~~p~~~~~~~-~~--------~G~~~~G~V~~v~~~G----~FV~l--~~~~~Glvhisel~~~~-------- 67 (115)
T 2khi_A 11 SSGLVPRGSHWVAIAKR-YP--------EGTKLTGRVTNLTDYG----CFVEI--EEGVEGLVHVSEMDWTN-------- 67 (115)
T ss_dssp ----------CCCSSCS-SC--------SSCEEEEEEEEEETTE----EEEEC--STTCEEEEETTSSSCSS--------
T ss_pred cchhhcccCCHHHHhhc-CC--------CCCEEEEEEEEEECCE----EEEEE--CCCCEEEEEHHHCCccc--------
Confidence 47899999999753322 33 4777999999999999 99988 78999999 67776321
Q ss_pred hhcccCCCCCcceeeeccCCCee----EEEecccchhhhhhchhhhhhhHHhhhhc
Q 024995 204 LWLSNAPPSGKKFTLLARAGRQV----QEIQLSHSLIRKASKRHCNEYWNVFHETA 255 (259)
Q Consensus 204 ~~~~~~~~~~~~~~~~~r~G~~V----~~v~~~~~~i~ls~k~~~~~p~~~~~~~~ 255 (259)
....... .+++||.| +++|.++++|+||+|++.++||+.+.++|
T Consensus 68 ----~~~~~~~----~~~vGd~V~vkV~~vd~~~~rI~lslk~~~~~p~~~~~~~~ 115 (115)
T 2khi_A 68 ----KNIHPSK----VVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETH 115 (115)
T ss_dssp ----TTCSSTT----TCCTTCEEEEEEEEEETTTTEEEECCCCCCSSCCCCCCCCC
T ss_pred ----cccCccc----EECCCCEEEEEEEEEECCCCEEEEEEEecCcCHHHHHHhhC
Confidence 1222233 56999999 68899999999999999999999998876
No 14
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.55 E-value=1.9e-14 Score=104.89 Aligned_cols=69 Identities=32% Similarity=0.496 Sum_probs=62.8
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEec
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~ 129 (259)
++++|+++.|+ +||+||+++ .+++||||+|++++.++ +.|++||.|+|+|+++|.+++||.||+|+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~-----~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLN-----EQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEE-----TTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEEC-----CCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 57899999999 899999998 48999999999998775 67999999999999999988999999998
Q ss_pred ccc
Q 024995 130 LEE 132 (259)
Q Consensus 130 ~~~ 132 (259)
+.+
T Consensus 73 ~~~ 75 (80)
T 2k52_A 73 LEH 75 (80)
T ss_dssp CC-
T ss_pred ccc
Confidence 764
No 15
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.47 E-value=5.9e-15 Score=130.75 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=86.7
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 54 ~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
..+++|+++.|+ +||+||+|++++ +++||||+|++++.++.++.+.|++||.|.|+|+++|.++++|.||+|
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~---~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk 83 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYG---GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLK 83 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTT---SEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEEST
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCC---CeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 357899999999 999999995211 799999999999999999999999999999999999998999999999
Q ss_pred ccccCcchHhhhhhcCCCCccccCCCCccccceeeec-cCC
Q 024995 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE-PLP 168 (259)
Q Consensus 129 ~~~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~-~~G 168 (259)
.+.++||....+++ +. |+.+.|.|..+. .+|
T Consensus 84 ~~~~~~~~~~~~~~-~~--------~~~~~~iv~~lae~~~ 115 (266)
T 3cw2_C 84 KVTDDERRKKNLQW-KK--------IQRLDKILELVSQKLK 115 (266)
T ss_dssp TSCTTHHHHHHHHH-HH--------HHHHHHHHHHHHHHTT
T ss_pred ecchhhHHHHHHhc-cc--------cCccceeeeehhhhCC
Confidence 99999998766654 32 334667777665 344
No 16
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.42 E-value=8e-14 Score=116.85 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
+|+++.|+|++|++|| +||+|...+|++||+ +|++++. |+ .++. .++++||.| +
T Consensus 15 ~G~iv~G~V~~I~~fG----aFV~L~e~~g~eGLvhiSels~~----------~v---~~~~----~~~~vGd~V~VkVl 73 (182)
T 1kl9_A 15 VEDVVMVNVRSIAEMG----AYVSLLEYNNIEGMILLSELSRR----------RI---RSIN----KLIRIGRNECVVVI 73 (182)
T ss_dssp TTCEEEEEEEEECSSE----EEEEETTTTTEEEEEEGGGC-----------------------------CTTCEEEEEEE
T ss_pred CCCEEEEEEEEEeccE----EEEEEccCCCcEEEEEHHHCCCc----------cc---CCHH----HhcCCCCEEEEEEE
Confidence 4788999999999999 999995457999999 7888743 22 2223 367999999 7
Q ss_pred EEecccchhhhhhchhhhhhhHHhhhhcccC
Q 024995 228 EIQLSHSLIRKASKRHCNEYWNVFHETAIVN 258 (259)
Q Consensus 228 ~v~~~~~~i~ls~k~~~~~p~~~~~~~~~~~ 258 (259)
+||.++++|+||+|++.++||+.+.++|++|
T Consensus 74 ~vD~~~~rI~LSlk~~~~~p~~~~~~~~~~g 104 (182)
T 1kl9_A 74 RVDKEKGYIDLSKRRVSPEEAIKCEDKFTKS 104 (182)
T ss_dssp EEETTTTEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEEeecCcChHHHHHHhccCC
Confidence 8999999999999999999999999999876
No 17
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.37 E-value=3e-13 Score=112.67 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
+|+++.|+|++|++|| +||+|...+|++||+ +|++++. |+ .++.. .+++||.| +
T Consensus 15 ~G~iv~G~V~~i~~fG----aFV~L~e~~gveGLvhiSels~~----------~v---~~~~~----~~~vGd~V~vkVl 73 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMG----AYVKLLEYDNIEGMILLSELSRR----------RI---RSIQK----LIRVGKNDVAVVL 73 (175)
T ss_dssp TTCEEEEEEEEEETTE----EEEEETTTTTCEEEEECC---------------------CCCC----CCCTTSEEEEEEE
T ss_pred CCCEEEEEEEEEecce----EEEEEcCCCCcEEEEEHHHcCCc----------cc---CCHHH----cCCCCCEEEEEEE
Confidence 4777999999999999 999993337999999 7888743 22 22333 67999999 7
Q ss_pred EEecccchhhhhhchhhhhhhHHhhhhcccC
Q 024995 228 EIQLSHSLIRKASKRHCNEYWNVFHETAIVN 258 (259)
Q Consensus 228 ~v~~~~~~i~ls~k~~~~~p~~~~~~~~~~~ 258 (259)
+||.++++|+||+|++.++||+.+.++|++|
T Consensus 74 ~vd~~~~~I~LSlk~~~~~~~~~~~~~~~~g 104 (175)
T 2a19_A 74 RVDKEKGYIDLSKRRVSSEDIIKCEEKYQKS 104 (175)
T ss_dssp EEETTTTEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred EEECCCCeEEEEEEecCcChHHHHHHhccCC
Confidence 8999999999999999999999999999876
No 18
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.35 E-value=6.7e-14 Score=138.46 Aligned_cols=101 Identities=28% Similarity=0.475 Sum_probs=2.4
Q ss_pred EEEeCCCCEEEEEechh--------hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCccccc
Q 024995 31 IQANEEMKKLVFSEKDA--------VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 97 (259)
Q Consensus 31 l~id~~~~~v~lS~k~~--------~~~~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~ 97 (259)
++++. .+.+.++.... .++.+...+++|++|.|+ +||+||+|. .|++||||+|+++|.++.
T Consensus 603 idi~d-dG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~-----~g~eGLvHiSels~~rv~ 676 (726)
T 4aid_A 603 VDIND-DGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFF-----GAKDGLVHVSQISNERVA 676 (726)
T ss_dssp ------------CCSCHHHHHHHHHC------------------------------------------------------
T ss_pred eeEEC-CceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEEC-----CCcEEEEEHHHcCccccc
Confidence 56663 46666665421 255667889999999999 999999998 489999999999999999
Q ss_pred ChhhhcCCCCeEEEEEEEEeCCCCeeEEEEeccccCcchHh
Q 024995 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (259)
Q Consensus 98 ~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~~p~~~~ 138 (259)
++.+.|++||.|+|||+++|+ ++||.||+|++.++||.+.
T Consensus 677 ~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~~G~~~ 716 (726)
T 4aid_A 677 KPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQETGEDL 716 (726)
T ss_dssp -----------------------------------------
T ss_pred CccccCCCCCEEEEEEEEECC-CCcEEEEEeecccCcchhh
Confidence 999999999999999999997 8999999999999998654
No 19
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.31 E-value=1.8e-13 Score=135.71 Aligned_cols=101 Identities=30% Similarity=0.541 Sum_probs=0.0
Q ss_pred EEEeCCCCEEEEEechh--------hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCccccc
Q 024995 31 IQANEEMKKLVFSEKDA--------VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 97 (259)
Q Consensus 31 l~id~~~~~v~lS~k~~--------~~~~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~ 97 (259)
++++. .+.+.+|.... .++.+...+++|++|.|+ +||+||++. .|++||||+|+++|.++.
T Consensus 593 IdI~~-dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~-----~g~eGLvHiSel~~~~v~ 666 (723)
T 3cdi_A 593 IEIED-DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG-----GGKEGLVHISQIADKRVE 666 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecC-CccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeC-----CCceEEEEHHHcCCcccc
Confidence 45554 46777765432 245567789999999999 999999997 489999999999999999
Q ss_pred ChhhhcCCCCeEEEEEEEEeCCCCeeEEEEeccccCcchHh
Q 024995 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (259)
Q Consensus 98 ~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~~p~~~~ 138 (259)
++.+.|++||.|+|+|+++|. ++||.||+|++.++||.+.
T Consensus 667 ~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~~g~~~ 706 (723)
T 3cdi_A 667 KVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAA 706 (723)
T ss_dssp -----------------------------------------
T ss_pred CcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCCCCccc
Confidence 999999999999999999998 8999999999999999753
No 20
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.27 E-value=7.2e-14 Score=139.09 Aligned_cols=101 Identities=22% Similarity=0.412 Sum_probs=38.8
Q ss_pred EEEeCCCCEEEEEechhh--------Hhhhc--cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceec----
Q 024995 31 IQANEEMKKLVFSEKDAV--------WNKYS--SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV---- 91 (259)
Q Consensus 31 l~id~~~~~v~lS~k~~~--------~~~~~--~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isel---- 91 (259)
++++. .+.+.+|..... ++.+. ..+++|++|.|+ +||+||+|. .|++||||+|++
T Consensus 631 IdI~~-dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~-----~g~eGLvHiSel~~~~ 704 (757)
T 1e3p_A 631 ITIED-DGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLL-----PGKDGLLHISQIRKLA 704 (757)
T ss_dssp C---------CCCBSSHHHHCC---------------------CBEEECC-CSCEECCC--------CCCCC--------
T ss_pred EEecC-CceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccccEEEEEEc-----CCcEEEEEhHHhcccc
Confidence 56664 588888876531 23344 678999999999 999999997 489999999999
Q ss_pred CcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEeccccCcchHh
Q 024995 92 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (259)
Q Consensus 92 s~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~~p~~~~ 138 (259)
+|.++.++++.|++||+|+|+|+++|. ++||.||+|++.++||...
T Consensus 705 s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~pw~~~ 750 (757)
T 1e3p_A 705 GGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVIEGEEAASDE 750 (757)
T ss_dssp -----------CCSSCBCCCCCCCCCS-SCC----------------
T ss_pred CCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEecCCCCchhhh
Confidence 999999999999999999999999998 9999999999999999753
No 21
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.26 E-value=1.6e-12 Score=100.03 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=61.9
Q ss_pred EEEEeccccCcchHhhhhhcCCCCccccCCCCccccceeeeccCCCccceeeeecccCCeeEEE-Eccccccccccchhh
Q 024995 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDL 202 (259)
Q Consensus 124 ~lS~K~~~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~ 202 (259)
+-|+|++.++||...... +. +|+++.|+|+++++|| +|++| .+|++||+ +|+++...
T Consensus 11 ~~~iKq~~~~p~~~~~~~-~~--------~G~iv~G~V~~v~~~G----~fV~l--~~~~~Gll~~sel~~~~------- 68 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVAL-NK--------KGAIVTGKVTAVDAKG----ATVEL--ADGVEGYLRASEASRDR------- 68 (109)
T ss_dssp ----------CHHHHTTT-CC--------SSSEEEEEEEEECSSC----EEEEC--STTCBCCBCTTCCCSSS-------
T ss_pred ccchhhcccCHHHHHhhc-CC--------CCCEEEEEEEEEECCe----EEEEE--CCCCEEEEEHHHcCccc-------
Confidence 458999999999866544 33 3777999999999999 99988 78999999 77776321
Q ss_pred hhhcccCCCCCcceeeeccCCCee----EEEecccchhhhhhchhhh
Q 024995 203 QLWLSNAPPSGKKFTLLARAGRQV----QEIQLSHSLIRKASKRHCN 245 (259)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~r~G~~V----~~v~~~~~~i~ls~k~~~~ 245 (259)
. ..+ ...+++||.| +++|.++++|.||+|++.+
T Consensus 69 ---~---~~~----~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 69 ---V---EDA----TLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp ---S---SSG----GGSCCTTCEEEEEEEEEETTTTEEEEETTSSSS
T ss_pred ---c---cCh----hhccCCCCEEEEEEEEEECCCCEEEEEEeecCh
Confidence 1 112 2256999999 6889988999999998754
No 22
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.23 E-value=3.5e-12 Score=106.51 Aligned_cols=82 Identities=27% Similarity=0.563 Sum_probs=66.9
Q ss_pred HhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccc-----------cChhhhcCCCCeEEEE
Q 024995 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----------QDIRDILNEGDEVRVK 112 (259)
Q Consensus 49 ~~~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~-----------~~~~~~~~~Gd~V~vk 112 (259)
++.+..++.+|++++|+ +||+||+++ +++||+|+|+++++++ ++..+.|++||.|++|
T Consensus 72 ~~~iv~~p~~Gev~~G~V~~v~~~G~fv~l~------~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~Vrvk 145 (180)
T 4ayb_E 72 FDMITYVPVVQEVVEGEVLQVDNYGVFVNLG------PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRAR 145 (180)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECS------SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEE
T ss_pred hheeeeeccCCCEEEEEEeeeccceEEEEEC------CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEE
Confidence 34456689999999999 999999997 6899999999999876 4677789999999999
Q ss_pred EEEEeCC----CCeeEEEEeccc--cCcch
Q 024995 113 VIKIDRE----KSRITLSIKQLE--EDPLL 136 (259)
Q Consensus 113 Vl~id~~----~~ri~lS~K~~~--~~p~~ 136 (259)
|+++|.+ ..||.||+|+.- +.+|-
T Consensus 146 V~~v~~~~~~~~~rI~ls~k~~gLG~~~W~ 175 (180)
T 4ayb_E 146 VISVASTVTGRLPRIALTMRQPYLGKLEWI 175 (180)
T ss_dssp EEEECC-------CEEEECCSTTCEEHHHH
T ss_pred EEEEeCCCCcccCcEEEEcCCCCCCCChhH
Confidence 9999863 458999999843 34453
No 23
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.17 E-value=2.4e-11 Score=94.85 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=62.3
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceec-CcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEE
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isel-s~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS 126 (259)
..++++|+++.|+ +||+||+|+. .+..||+|.+++ +|.++.++.+.|++||.|+|+|+++|.++++|.||
T Consensus 16 ~~~l~~G~i~~G~V~~v~~fG~fV~l~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 16 AEALKPGMLLTGTVSSLEDHGYLVDIGV----DGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp TTTCCTTCEEEEEEEEECSSEEEEECCC----SSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEE
T ss_pred HhcCCCCCEEEEEEEEEeCceEEEEECC----CCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 4679999999999 9999999971 156777666664 24445678899999999999999999988999999
Q ss_pred Eecccc
Q 024995 127 IKQLEE 132 (259)
Q Consensus 127 ~K~~~~ 132 (259)
+|+...
T Consensus 92 lk~~~l 97 (119)
T 1wi5_A 92 VGHSEV 97 (119)
T ss_dssp CCCCCS
T ss_pred Echhhc
Confidence 987544
No 24
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.16 E-value=5.3e-11 Score=99.83 Aligned_cols=80 Identities=25% Similarity=0.493 Sum_probs=68.1
Q ss_pred hhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCccccc-----------ChhhhcCCCCeEEEEEE
Q 024995 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-----------DIRDILNEGDEVRVKVI 114 (259)
Q Consensus 51 ~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~-----------~~~~~~~~Gd~V~vkVl 114 (259)
......++|+++.|+ +||+||+++ +.+||+|+|++++.++. ++.+.|++||.|+|+|+
T Consensus 74 ~i~~~~~~Gev~~G~V~~v~~~G~fV~l~------~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~ 147 (187)
T 1go3_E 74 TLVYIPEMYELIEGEVVDVVEFGSFVRLG------PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIV 147 (187)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEECS------SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEE
T ss_pred EEEEccCCCCEEEEEEEEEeCcEEEEEEc------CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEE
Confidence 345688999999999 899999997 59999999999988765 78889999999999999
Q ss_pred EEeCCCC-----eeEEEEeccc--cCcch
Q 024995 115 KIDREKS-----RITLSIKQLE--EDPLL 136 (259)
Q Consensus 115 ~id~~~~-----ri~lS~K~~~--~~p~~ 136 (259)
++|.+++ +|.||+|+.. +.+|-
T Consensus 148 ~vd~~~~~p~~~~I~lS~k~~~LG~~~w~ 176 (187)
T 1go3_E 148 AISLKAERKRGSKIALTMRQPYLGKLEWI 176 (187)
T ss_dssp EEECCC-----CEEEEECCSTTCEEHHHH
T ss_pred EEEcccCCCCccEEEEEEcCCCCCcHHHH
Confidence 9998655 9999999854 34553
No 25
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.6e-11 Score=123.86 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=69.1
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCccc-ccChhhhcCCCCeEEEEEEEEeCCCCeeEEE
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~-~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS 126 (259)
...+++|+++.|+ +||+||+|+ .|++||||+|+|++.+ +.+|.+.|++||.|+|+|+++|.+++||.||
T Consensus 897 ~~~l~~G~iv~G~V~~V~~fGaFV~L~-----~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LS 971 (1219)
T 3psi_A 897 EKTFFKGSIIPVRVERFWHNDIICTTN-----SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 971 (1219)
T ss_dssp TTTSCTTCEEEEEEEEECSSCEEEECT-----TSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEE
T ss_pred HhhCCCCCEEEEEEEEEecceEEEEeC-----CCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 3789999999999 999999998 5899999999999998 8999999999999999999999999999999
Q ss_pred Eeccc
Q 024995 127 IKQLE 131 (259)
Q Consensus 127 ~K~~~ 131 (259)
+|...
T Consensus 972 lk~~d 976 (1219)
T 3psi_A 972 LLDHD 976 (1219)
T ss_dssp CCHHH
T ss_pred ecHHH
Confidence 98643
No 26
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.12 E-value=2.6e-11 Score=109.16 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=70.5
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
+|+++.|+|++|++|| +||+|...+|++||+ +|++++. | ...+.. .+++||.| +
T Consensus 13 vG~iv~G~V~~I~~fG----aFV~L~ey~gveGLvhiSels~~----------~---i~~~~~----~~kvGd~V~VkVl 71 (308)
T 1q8k_A 13 VEDVVMVNVRSIQEMG----AYVSLLEYNNIEGMIHLSELSRR----------R---IRSINK----LIRIGRNECVKVI 71 (308)
T ss_dssp SCCEEEEEEEEEETTE----EEEESCTTTSCCEEECGGGTSCS----------S---CSCCTT----TCSSSCEEEEEEE
T ss_pred CCCEEEEEEEEEeCcE----EEEEECCCCCeEEEEEhHHcCcc----------c---ccCHHH----hcCCCCEEEEEEE
Confidence 5888999999999999 999992117999999 7888732 2 222333 56999999 6
Q ss_pred EEecccchhhhhhchhhhhhhHHhhhhcccC
Q 024995 228 EIQLSHSLIRKASKRHCNEYWNVFHETAIVN 258 (259)
Q Consensus 228 ~v~~~~~~i~ls~k~~~~~p~~~~~~~~~~~ 258 (259)
++|+++++|+||+|++.++||..+.++|++|
T Consensus 72 ~vD~~~~rI~LSlK~~~~~p~~~~~~~~~~G 102 (308)
T 1q8k_A 72 RVDKEKGYIDLSKRRVSPEEAIKCEDKFTKS 102 (308)
T ss_dssp EEETTTTEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCEEEEEEEecccChHHHHHHHccCC
Confidence 8999999999999999999999999999876
No 27
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.10 E-value=4e-11 Score=106.49 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
+|+++.|+|++|++|| +||+|...+|++||+ +|+++.. |+ ..+. ..+++||.| +
T Consensus 11 ~Gdiv~G~V~~I~~fG----aFV~L~e~~gieGlIhiSels~~----------~v---~~~~----~~~kvGd~V~vkVi 69 (275)
T 3aev_A 11 EGEFVVATVKRIHNYG----AFLELDEYPGKEAFMHISEVAST----------WV---RNIR----DYLKEGQKVVAKVI 69 (275)
T ss_dssp TTCEEEEEEEEEETTE----EEEEETTSTTCEEEEEGGGSCSS----------CC---SCGG----GTCCTTCEEEEEEE
T ss_pred CCCEEEEEEEEEECcE----EEEEECCCCCeEEEEEHHHcCcc----------cc---cCHH----hccCCCCEEEEEEE
Confidence 4777999999999999 999993226999999 7887733 22 2222 356999999 6
Q ss_pred EEecccchhhhhhchhhhhhhHHhhhhcccC
Q 024995 228 EIQLSHSLIRKASKRHCNEYWNVFHETAIVN 258 (259)
Q Consensus 228 ~v~~~~~~i~ls~k~~~~~p~~~~~~~~~~~ 258 (259)
++|.++++|+||+|++.++||....++|++|
T Consensus 70 ~vD~~~~~I~LSlk~~~~~~~~~~~~~~~~g 100 (275)
T 3aev_A 70 RVDPRKGHIDLSLRRVTQQQRKAKLQEFKRA 100 (275)
T ss_dssp EEETTTTEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEEeecCcchhHHHHHhccCC
Confidence 8999999999999999999999999998875
No 28
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.08 E-value=3.4e-11 Score=120.25 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=68.4
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEE
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~ 127 (259)
+.++++|+++.|+ +||+||+|+ .+++||||+|+|++.++.++.+.|++||.|+|+|+++|.++++|.||+
T Consensus 649 ~~~l~vG~iv~G~V~~V~~fGaFV~l~-----~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSl 723 (785)
T 3bzc_A 649 LKDLKPGMVLEGVVTNVTNFGAFVDIG-----VHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSM 723 (785)
T ss_dssp STTCCTTCBCCCEEEEEETTEEEEECS-----SSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECC
T ss_pred hhhcCCCCEEEEEEEEEecCCeEEEeC-----CCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEE
Confidence 4568999999888 999999997 489999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 024995 128 KQLE 131 (259)
Q Consensus 128 K~~~ 131 (259)
|...
T Consensus 724 k~~~ 727 (785)
T 3bzc_A 724 RMSD 727 (785)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 9644
No 29
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.03 E-value=2.3e-10 Score=94.74 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCCCCCCC-CchhHhhhcccCCCCEEE---EE--EEEEe--C-CCCEEEEEech----hhHhhhccCCCCCCEEEEE---
Q 024995 2 SPSHSCKE-PQKSIHEIAKGLTGSIIS---VK--VIQAN--E-EMKKLVFSEKD----AVWNKYSSRVNVEDIFVGR--- 65 (259)
Q Consensus 2 ~~~~~~~~-p~~~~~~~~~~~vG~~v~---~~--Vl~id--~-~~~~v~lS~k~----~~~~~~~~~l~~G~iv~G~--- 65 (259)
.|++|+.+ |+....+....++|+.+. .. +++++ . ..+++.-+-.. ..+........+|++++|+
T Consensus 14 pp~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~ 93 (171)
T 1y14_B 14 HPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVS 93 (171)
T ss_dssp CTTSCSTTHHHHHHHHHHHHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEECCCTTCEEEEEEEE
T ss_pred CHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEccCCCCCEEEEEEEE
Confidence 46777544 444444445556666553 12 23333 2 13444422111 1123345578999999999
Q ss_pred --eeeEEEEEccCCCCccEEEEEEceecCcccccCh----------hhhcCCCCeEEEEEEEEeCCCC
Q 024995 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKVIKIDREKS 121 (259)
Q Consensus 66 --~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~----------~~~~~~Gd~V~vkVl~id~~~~ 121 (259)
+||+||+++ + .+||+|+|+|++.+.-++ ++.+++||.|+|+|+++|.+.+
T Consensus 94 v~~fG~FV~l~-----~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 94 CSQHGFEVQVG-----P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp EETTEEEEEET-----T-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred EecCEEEEEec-----C-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 999999998 5 999999999986533222 2669999999999999998664
No 30
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.03 E-value=8e-12 Score=124.42 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=45.1
Q ss_pred eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEeccccCcchHhhhhhcCC
Q 024995 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145 (259)
Q Consensus 66 ~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~~p~~~~~~~~~~~ 145 (259)
++|+||+++ -+|.+|++..++.......+ ++. .. .+|+ .+.
T Consensus 626 ~~G~~IdI~-------~dG~v~Is~~~~~~~~~a~~--------------------~i~----~i-~~p~------~~~- 666 (757)
T 1e3p_A 626 DTGAEITIE-------DDGTIYIGAADGPAAEAARA--------------------TIN----GI-ANPT------SPE- 666 (757)
T ss_dssp CCCSCC---------------CCCBSSHHHHCC-----------------------------------------------
T ss_pred hhCCEEEec-------CCceEEEecCCHHHHHHHHH--------------------HHH----Hh-cchh------hcc-
Confidence 899999996 38999999988754322111 010 01 1231 123
Q ss_pred CCccccCCCCccccceeeeccCCCccceeeeecccCCeeEEE-Eccc----cccccccchhhhhhcccCCCCCcceeeec
Q 024995 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQ----GFEKRVVSQDLQLWLSNAPPSGKKFTLLA 220 (259)
Q Consensus 146 g~~~~~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
+|++++|+|+++++|| +||+| .+|++||+ +|++ +++ |+ ..+. .++
T Consensus 667 -------vG~i~~G~V~~i~~fG----aFV~l--~~g~eGLvHiSel~~~~s~~----------rv---~~~~----~~~ 716 (757)
T 1e3p_A 667 -------VGERILGSVVKTTTFG----AFVSL--LPGKDGLLHISQIRKLAGGK----------RV---ENVE----DVL 716 (757)
T ss_dssp -------------CBEEECC-CS----CEECC--C---CCCCC------------------------------------C
T ss_pred -------cccEEEEEEEEccccE----EEEEE--cCCcEEEEEhHHhccccCCC----------cc---cCcc----ccc
Confidence 3667999999999999 99988 89999998 8888 532 22 2222 367
Q ss_pred cCCCee----EEEecccchhhhhhchhhhhhhHHhhhhccc
Q 024995 221 RAGRQV----QEIQLSHSLIRKASKRHCNEYWNVFHETAIV 257 (259)
Q Consensus 221 r~G~~V----~~v~~~~~~i~ls~k~~~~~p~~~~~~~~~~ 257 (259)
++||.| ++||. ++||+||+|++.++||+....+|+.
T Consensus 717 ~vGd~V~VkVi~vd~-~grI~LS~k~~~~~pw~~~~~~~~~ 756 (757)
T 1e3p_A 717 GVGQKVQVEIAEIDS-RGKLSLIPVIEGEEAASDEKKDDAE 756 (757)
T ss_dssp CSSCBCCCCCCCCCS-SCC----------------------
T ss_pred CCCCEEEEEEEEECC-CCCEEEEEecCCCCchhhhhhcccC
Confidence 999999 68888 8899999999999999999998864
No 31
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.6e-11 Score=123.99 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCccc-ccChhhhcCCCCeEEEEEEEEeCCCCeeEEE
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~-~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS 126 (259)
...+++|+++.|+ +||+||+|+ .|++||||+|+|++.+ +.+|.+.|++||.|+|+|+++|.+++||.||
T Consensus 900 ~~~l~~G~iv~G~V~~V~~fGaFV~L~-----~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LS 974 (1030)
T 3psf_A 900 EKTFFKGSIIPVRVERFWHNDIICTTN-----SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 974 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCEEEEEEEEEccCeEEEEeC-----CCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 3689999999999 999999998 5899999999999998 8999999999999999999999999999999
Q ss_pred Eeccc
Q 024995 127 IKQLE 131 (259)
Q Consensus 127 ~K~~~ 131 (259)
+|...
T Consensus 975 lk~~d 979 (1030)
T 3psf_A 975 LLDHD 979 (1030)
T ss_dssp -----
T ss_pred echHH
Confidence 98644
No 32
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.02 E-value=1.5e-10 Score=99.24 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=86.0
Q ss_pred CCCCCCCC-CchhHhhhcccCCCCEEE---EEEEEEeCC-----CCEEEEEech----hhHhhhccCCCCCCEEEEE---
Q 024995 2 SPSHSCKE-PQKSIHEIAKGLTGSIIS---VKVIQANEE-----MKKLVFSEKD----AVWNKYSSRVNVEDIFVGR--- 65 (259)
Q Consensus 2 ~~~~~~~~-p~~~~~~~~~~~vG~~v~---~~Vl~id~~-----~~~v~lS~k~----~~~~~~~~~l~~G~iv~G~--- 65 (259)
.|++|.++ |+....+....++|+.+. ..|..+|-+ .+.+.-.--. ..+.......++|++++|+
T Consensus 14 pp~~~~~~~p~~i~~~I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~i~~~p~vGev~~G~V~~ 93 (215)
T 2b8k_G 14 HPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVS 93 (215)
T ss_dssp CGGGCSSSHHHHHHHHHHHSSTTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCEEEECCCTTEEEEEEEEE
T ss_pred CHHHHChhHhHHHHhcCCHHHCCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhhheeccCCCCEEEEEEEE
Confidence 35666543 444445556678888774 333334444 3444421000 1123344578999999999
Q ss_pred --eeeEEEEEccCCCCccEEEEEEceecCcccccChh----------hhcCCCCeEEEEEEEEeCCCC---eeEEEEecc
Q 024995 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR----------DILNEGDEVRVKVIKIDREKS---RITLSIKQL 130 (259)
Q Consensus 66 --~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~----------~~~~~Gd~V~vkVl~id~~~~---ri~lS~K~~ 130 (259)
+||+||+|+ + .+||||+|+|++.+..++. +.+++||.|+|+|+++|.+.+ +|. |+|+.
T Consensus 94 vt~fG~FVelg-----~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~Ig-Smk~~ 166 (215)
T 2b8k_G 94 CSQHGFEVQVG-----P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIG-SIKED 166 (215)
T ss_dssp EETTEEEEECT-----T-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEEE-ECCST
T ss_pred EecceEEEEec-----C-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEEEE-EcCCC
Confidence 999999997 5 9999999999865443332 569999999999999998764 677 88876
Q ss_pred ccCcch
Q 024995 131 EEDPLL 136 (259)
Q Consensus 131 ~~~p~~ 136 (259)
..-||.
T Consensus 167 ~LG~~~ 172 (215)
T 2b8k_G 167 YLGAIS 172 (215)
T ss_dssp TCEEC-
T ss_pred CCCCcc
Confidence 666664
No 33
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=99.01 E-value=5.5e-11 Score=108.37 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=74.5
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEEEEechhh--------HhhhccCCC--CCCEEEEE-----eeeEEEEEccCCCCccE
Q 024995 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV--------WNKYSSRVN--VEDIFVGR-----DYGAFIHLRFPDGLYHL 82 (259)
Q Consensus 18 ~~~~vG~~v~~~Vl~id~~~~~v~lS~k~~~--------~~~~~~~l~--~G~iv~G~-----~~G~fV~l~~~~g~~gi 82 (259)
.+..+|+++++.|...|.. +....+.|+.. ++.++..++ .|++++|+ ++|+||+++ +.
T Consensus 85 ~~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG------k~ 157 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG------KL 157 (344)
T ss_dssp TTCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET------TE
T ss_pred ccccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC------Ce
Confidence 4467999999998777643 33444445432 223455565 89999999 789999997 79
Q ss_pred EEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCC--eeEEEEe
Q 024995 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS--RITLSIK 128 (259)
Q Consensus 83 ~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~--ri~lS~K 128 (259)
+|++|.+|++ |.+.|++||.|+|.|++++.+++ +|.||.+
T Consensus 158 EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 158 ETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp EEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred EEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 9999999986 56789999999999999997655 5666654
No 34
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.00 E-value=5.2e-10 Score=95.59 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=65.9
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCC---CccEEEEEEceecCccccc--ChhhhcCCCCeEEEEEEEEeCCCCee
Q 024995 54 SRVNVEDIFVGR-----DYGAFIHLRFPDG---LYHLTGLVHVSEVSWDLIQ--DIRDILNEGDEVRVKVIKIDREKSRI 123 (259)
Q Consensus 54 ~~l~~G~iv~G~-----~~G~fV~l~~~~g---~~gi~glv~isels~~~~~--~~~~~~~~Gd~V~vkVl~id~~~~ri 123 (259)
..+++|+++.|+ ++|+||+|.++++ ..+.+|+||++|+++.+.. ++.+.|++||.|+|+|++++..++++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 367999999999 8999999963211 0257999999999998887 89999999999999999999866789
Q ss_pred EEEEecc
Q 024995 124 TLSIKQL 130 (259)
Q Consensus 124 ~lS~K~~ 130 (259)
.||+|+.
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999864
No 35
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.00 E-value=2e-10 Score=91.06 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=61.6
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
.+|+++.|+|++|++|| +||+| .+|++||+ +|++++. |+ .. ....+++||.|
T Consensus 6 ~vG~iv~G~V~~i~~~G----~FV~l--~~~~~Glihisel~~~----------~~---~~----~~~~~~vGd~V~vkV 62 (130)
T 2k4k_A 6 EVGSVYTGKVTGLQAYG----AFVAL--DEETQGLVHISEVTHG----------FV---KD----INEHLSVGDEVQVKV 62 (130)
T ss_dssp CTTCEEEEEEEEEETTE----EEEEE--ETTEEEEEEGGGTSSS----------CC---SC----GGGTCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCe----EEEEE--CCCcEEEEEHHHCCcc----------cc---cC----ccccCCCCCEEEEEE
Confidence 35788999999999999 99999 78999999 7777633 11 11 22356999999
Q ss_pred EEEecccchhhhhhchhhhhhhH
Q 024995 227 QEIQLSHSLIRKASKRHCNEYWN 249 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~~~~~p~~ 249 (259)
++||.++++|+||+|++.++||.
T Consensus 63 ~~vd~~~~kI~LSlk~~~~~p~~ 85 (130)
T 2k4k_A 63 LAVDEEKGKISLSIRATQAAPEK 85 (130)
T ss_dssp EEEETTTTEEEEESHHHHHSCCC
T ss_pred EEEeCCCCEEEEEEeecccCccc
Confidence 68898899999999999999986
No 36
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.96 E-value=1.2e-09 Score=91.09 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=60.3
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCC-----CccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeE
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDG-----LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g-----~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~ 124 (259)
..+ |++|.|+ ++|+||+|..+++ ..+.+|+||+|++++.++.++.+.|++||.|+|+|++ +++.
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~ 128 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLR 128 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEE
Confidence 467 9999999 8999999982100 0179999999999999999999999999999999997 8899
Q ss_pred EEEecc
Q 024995 125 LSIKQL 130 (259)
Q Consensus 125 lS~K~~ 130 (259)
||+|+.
T Consensus 129 LS~k~~ 134 (179)
T 3m7n_A 129 LSTKEE 134 (179)
T ss_dssp EECCST
T ss_pred EEEecC
Confidence 998864
No 37
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2.2e-10 Score=87.26 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=59.3
Q ss_pred CCCccccceeeeccCCCccceeeeeccc-CCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQE-DGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~-~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
.|+++.|+|++|++|| +|++|... +|++||+ +|++.... | .. +....+++||.|
T Consensus 12 vG~i~~G~V~~v~~fG----~FV~l~~~~~~~~Glvhisel~~~~---------~---~~----~~~~~~~~Gd~V~VkV 71 (103)
T 2eqs_A 12 IGDIYNGKVTSIMQFG----CFVQLEGLRKRWEGLVHISELRREG---------R---VA----NVADVVSKGQRVKVKV 71 (103)
T ss_dssp TTCEEEEEEEEECSSC----EEEEECSSSSCCEEEECGGGTSSSS---------C---CC----CHHHHCCTTCEEEEEE
T ss_pred CCCEEEEEEEEEeccE----EEEEEcCCCCCeEEEEEHHHCCCCc---------c---cC----CcccEeCCCCEEEEEE
Confidence 5788999999999999 99999321 3999999 77773221 1 12 123356999999
Q ss_pred EEEecccchhhhhhchhhhhhhHHhh
Q 024995 227 QEIQLSHSLIRKASKRHCNEYWNVFH 252 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~~~~~p~~~~~ 252 (259)
+++|. ++|+||+|++.++||+.+.
T Consensus 72 ~~vd~--~~i~LSlk~~~~~~~~~~~ 95 (103)
T 2eqs_A 72 LSFTG--TKTSLSMKDVDQETGEDLN 95 (103)
T ss_dssp EEEET--TEEEEESTTBCTTTCCBCC
T ss_pred EEEEC--CeeEEEEeecccCCchhcC
Confidence 46665 6999999999999998764
No 38
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=9.4e-11 Score=91.62 Aligned_cols=91 Identities=7% Similarity=-0.011 Sum_probs=66.7
Q ss_pred cccCcchHhhhhhcCCCCccccCCCCccccceeeeccCCCccceeeeecccC-CeeEEE-Eccccccccccchhhhhhcc
Q 024995 130 LEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQED-GIDDVR-ITRQGFEKRVVSQDLQLWLS 207 (259)
Q Consensus 130 ~~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~-gv~gl~-~s~~~~~~~~~~~~~~~~~~ 207 (259)
+.+++|.... ..+. +|+++.|+|++|++|| +||+| .+ +++||+ +|++++.. +
T Consensus 8 ~~~~~~~~~~-~~~~--------vG~iv~G~V~~I~~fG----aFV~l--~g~~~~Glvhisel~~~~----------~- 61 (119)
T 2cqo_A 8 MNSGRPETME-NLPA--------LYTIFQGEVAMVTDYG----AFIKI--PGCRKQGLVHRTHMSSCR----------V- 61 (119)
T ss_dssp SCCCCCCCSC-CSCC--------TTCEEEEEEEEEETTE----EEEEC--TTCSSCEEEEHHHHCSSC----------C-
T ss_pred ccccchhhhh-cccC--------CCCEEEEEEEEEeCce----EEEEE--CCCcEEEEEEHHHCCccc----------c-
Confidence 4567775432 2223 4777999999999999 99999 44 479999 67776321 1
Q ss_pred cCCCCCcceeeeccCCCee----EEEeccc--chhhhhhchhhhhhhHHhh
Q 024995 208 NAPPSGKKFTLLARAGRQV----QEIQLSH--SLIRKASKRHCNEYWNVFH 252 (259)
Q Consensus 208 ~~~~~~~~~~~~~r~G~~V----~~v~~~~--~~i~ls~k~~~~~p~~~~~ 252 (259)
. +....+++||.| +++|.++ ++|+||||++.++||+.+.
T Consensus 62 --~----~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~~~~~~~~~~ 106 (119)
T 2cqo_A 62 --D----KPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLD 106 (119)
T ss_dssp --S----CHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTBCSSSCCBSC
T ss_pred --c----ChhhcCCCCCEEEEEEEEEeccccCceEEEEEeecccCCccccC
Confidence 1 233357999998 5778764 6899999999999998764
No 39
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.93 E-value=2e-10 Score=85.08 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=56.3
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-Ec-cccccccccchhhhhhcccCCCCCcceeeeccCCCee---
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-IT-RQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV--- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V--- 226 (259)
.+|+++.|+|+ +++|| +|++|...+|++||+ +| +++++ |+.. .+..+ +||.|
T Consensus 10 ~vG~~~~G~V~-v~~fG----~FVel~~~~~~eGLvhis~el~~~----------~~~~-------~~~~~-~Gd~V~Vk 66 (88)
T 1luz_A 10 NAGDVIKGRVY-EKDYA----LYIYLFDYPHFEAILAESVKMHMD----------RYVE-------YRDKL-VGKTVKVK 66 (88)
T ss_dssp CTTCEEEEEEE-EETTE----EEEEETTCTTSEEEEGGGSSCCHH----------HHHH-------HHHHH-TTCEEEEE
T ss_pred CCCCEEEEEEE-EEccE----EEEEECCCCCeEEEEEeeHHhCcc----------cccC-------HhHEe-CCCEEEEE
Confidence 35888999999 99999 999994335899999 78 87733 2221 12245 99998
Q ss_pred -EEEecccchhhhhhchhhhh
Q 024995 227 -QEIQLSHSLIRKASKRHCNE 246 (259)
Q Consensus 227 -~~v~~~~~~i~ls~k~~~~~ 246 (259)
+++|.++++|+||+|++.++
T Consensus 67 V~~vd~~~~kI~lslk~~~~~ 87 (88)
T 1luz_A 67 VIRVDYTKGYIDVNYKRMCRH 87 (88)
T ss_dssp EEEEETTTTEEEEEEEEECSC
T ss_pred EEEEECCCCEEEEEEeecCCC
Confidence 78999999999999998654
No 40
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.90 E-value=8.6e-10 Score=79.98 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=55.3
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
++|+++.|+|+++++|| +|++| .+|++||+ +|+++... . ..+++||.|
T Consensus 4 ~~G~iv~G~V~~v~~~G----~fV~l--~~~~~Gllh~sel~~~~----------~-----------~~~~~Gd~V~v~V 56 (80)
T 2k52_A 4 EPGKFYKGVVTRIEKYG----AFINL--NEQVRGLLRPRDMISLR----------L-----------ENLNVGDEIIVQA 56 (80)
T ss_dssp CTTCEEEEEEEEEETTE----EEEEE--ETTEEEEECGGGCSSCC----------G-----------GGCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCE----EEEEE--CCCCEEEEEHHHCCccc----------c-----------eeeCCCCEEEEEE
Confidence 46888999999999999 99998 78999999 77765221 1 245999999
Q ss_pred EEEecccchhhhhhchhhh
Q 024995 227 QEIQLSHSLIRKASKRHCN 245 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~~~~ 245 (259)
+++|.++++|+||+|++.+
T Consensus 57 ~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 57 IDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp EEEETTTTEEEEEECSCC-
T ss_pred EEEECCCCEEEEEEeeccc
Confidence 6889999999999999875
No 41
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.87 E-value=2.8e-10 Score=100.68 Aligned_cols=86 Identities=7% Similarity=0.072 Sum_probs=69.0
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
.+|+++.|+|++|++|| +||+|...+|++||+ +|+++++ |+ . +....+++||.|
T Consensus 10 ~vG~iv~G~V~~I~~~G----aFV~l~e~~~~~GlihiSels~~----------~v---~----~~~~~~~vGd~V~VkV 68 (266)
T 3cw2_C 10 SEGEILIATVKQVFDYG----SYVSLDEYGGLQAFLPWSEVSSK----------WV---K----NIRDVLKENRKVIVKV 68 (266)
T ss_dssp CTTCEEEEEEEECCSSS----BEEEETTTTSEECBBCGGGSSCS----------SC---C----CHHHHSCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeccE----EEEEEcCCCCeEEEEEhHHcCcc----------cc---c----CHHHhCcCCCEEEEEE
Confidence 35888999999999999 999992127999999 7887633 22 2 133367999999
Q ss_pred EEEecccchhhhhhchhhhhhhHHhhhhcccC
Q 024995 227 QEIQLSHSLIRKASKRHCNEYWNVFHETAIVN 258 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~~~~~p~~~~~~~~~~~ 258 (259)
+.+|.++++|+||+|++.++||..+.++|+.|
T Consensus 69 i~vd~~~g~I~LSlk~~~~~~~~~~~~~~~~~ 100 (266)
T 3cw2_C 69 IRVDRRKGTVDVSLKKVTDDERRKKNLQWKKI 100 (266)
T ss_dssp CCCCSSSCCCBEESTTSCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEEEecchhhHHHHHHhcccc
Confidence 46777789999999999999999999888765
No 42
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.87 E-value=3.1e-09 Score=87.93 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=55.9
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccCh------------hhhcCCCCeEEEEEEE
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI------------RDILNEGDEVRVKVIK 115 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~------------~~~~~~Gd~V~vkVl~ 115 (259)
....++|++++|+ +||+||+++ ..+||||+|+|++.+..++ .+.|++||.|+|+|++
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~------~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG------PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 149 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET------TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEE
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC------CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEE
Confidence 4567899999999 999999997 5779999999986533222 4579999999999999
Q ss_pred EeCCCC---eeEEEEec
Q 024995 116 IDREKS---RITLSIKQ 129 (259)
Q Consensus 116 id~~~~---ri~lS~K~ 129 (259)
+|.+.+ ++. |+|+
T Consensus 150 vd~~~~~~~~ig-sm~~ 165 (172)
T 2c35_B 150 TRVDKNDIFAIG-SLMD 165 (172)
T ss_dssp EEEETTEEEEEE-ECCS
T ss_pred EEcCCCCcEEEE-EecC
Confidence 998655 444 6654
No 43
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.74 E-value=4e-09 Score=87.41 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=56.3
Q ss_pred HhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccCh----------hhhcCCCCeEEEEE
Q 024995 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKV 113 (259)
Q Consensus 49 ~~~~~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~----------~~~~~~Gd~V~vkV 113 (259)
+..+.-+...|++++|+ +||+||+++ .++||+|+|+|++.+.-++ .+.+++||.|+|||
T Consensus 75 f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~------~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 75 YRAVLWRPFRGEVVDAIVTTVNKMGFFANIG------PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEEEEECCCTTCEEECCCCEEETTEEECCBT------TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEE
T ss_pred EEEeeeccCCCCEEEEEEEEEEcceEEEEeC------CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEE
Confidence 33455688999999999 999999997 5789999999986644333 46899999999999
Q ss_pred EEEeCCCCe
Q 024995 114 IKIDREKSR 122 (259)
Q Consensus 114 l~id~~~~r 122 (259)
+++|.+.++
T Consensus 149 ~~vd~~~~~ 157 (172)
T 3h0g_G 149 VGTRTDATE 157 (172)
T ss_dssp EEEEESSSC
T ss_pred EEEECCCCC
Confidence 999987754
No 44
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.73 E-value=9.7e-09 Score=90.02 Aligned_cols=71 Identities=25% Similarity=0.359 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccc---cChhhhcCCCCeEEEEEEEEeCCCCeeEE
Q 024995 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI---QDIRDILNEGDEVRVKVIKIDREKSRITL 125 (259)
Q Consensus 54 ~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~---~~~~~~~~~Gd~V~vkVl~id~~~~ri~l 125 (259)
..+++|++|.|+ ++|+||+|+ .+.+|+||++++++.+. .++.+.|++||.|.|+|++++. .+++.|
T Consensus 70 y~p~~GDiV~G~V~~v~~~ga~VdI~-----~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~L 143 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIYGWVVDIK-----APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVL 143 (251)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECS-----SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEcC-----CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEE
Confidence 357999999999 899999998 47999999999998777 7888999999999999999996 579999
Q ss_pred EEecc
Q 024995 126 SIKQL 130 (259)
Q Consensus 126 S~K~~ 130 (259)
|+|+.
T Consensus 144 S~r~~ 148 (251)
T 2je6_I 144 SVKGK 148 (251)
T ss_dssp ECCST
T ss_pred EEccc
Confidence 98753
No 45
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.71 E-value=1.4e-09 Score=107.85 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
+|++++|+|+++++|| +||+| .+|++||+ +|+++++ |+ .. ...++++||.| +
T Consensus 627 vG~i~~G~V~~i~~fG----aFVel--~~g~eGLvHiSel~~~----------~v---~~----~~~~~~vGd~V~VkVi 683 (723)
T 3cdi_A 627 VGRVYTGKVTRIVDFG----AFVAI--GGGKEGLVHISQIADK----------RV---EK----VTDYLQMGQEVPVKVL 683 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEEEEEEEecce----EEEEe--CCCceEEEEHHHcCCc----------cc---cC----cccccCCCCEEEEEEE
Confidence 3677999999999999 99988 78999998 7888743 12 22 23367999999 5
Q ss_pred EEecccchhhhhhchhhhhhhHHhhh
Q 024995 228 EIQLSHSLIRKASKRHCNEYWNVFHE 253 (259)
Q Consensus 228 ~v~~~~~~i~ls~k~~~~~p~~~~~~ 253 (259)
+||. +++|+||+|++.++||....-
T Consensus 684 ~vd~-~grI~LS~k~~~~~~g~~~~p 708 (723)
T 3cdi_A 684 EVDR-QGRIRLSIKEATEQSQPAAAP 708 (723)
T ss_dssp --------------------------
T ss_pred EECC-CCcEEEEEEeccCCCCcccCc
Confidence 7777 889999999999999987643
No 46
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.69 E-value=1.1e-08 Score=88.76 Aligned_cols=70 Identities=17% Similarity=0.343 Sum_probs=61.4
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcc----cccChhhhcCCCCeEEEEEEEEeCCCCeeE
Q 024995 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LIQDIRDILNEGDEVRVKVIKIDREKSRIT 124 (259)
Q Consensus 54 ~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~----~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~ 124 (259)
..+++|+++.|+ ++|+||+|+ .+.+|++|+++++.. +..++.+.|++||.|.|+|++++. .+++.
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~-----~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~ 135 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDIN-----SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPL 135 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECS-----SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEE
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeC-----CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEE
Confidence 367999999999 899999998 479999999999863 456788899999999999999996 56999
Q ss_pred EEEec
Q 024995 125 LSIKQ 129 (259)
Q Consensus 125 lS~K~ 129 (259)
||+|+
T Consensus 136 LS~k~ 140 (235)
T 2z0s_A 136 LTVQG 140 (235)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 99874
No 47
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.65 E-value=4.5e-08 Score=84.63 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=62.7
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcc-cccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~-~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
.+++|++|.|+ ++|+||+|+ .+.+|++|+++++.. +..++.+.|++||.|.|+|++++. .+++.||+|
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~-----~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r 127 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIY-----SPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMK 127 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS-----SSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECC
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC-----CCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEc
Confidence 57999999999 899999998 478999999999974 677889999999999999999996 589999987
Q ss_pred cc
Q 024995 129 QL 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 128 ~~ 129 (229)
T 2ba0_A 128 DR 129 (229)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 48
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.64 E-value=3.4e-09 Score=105.01 Aligned_cols=82 Identities=9% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
.+|+++.|+|++|++|| +||+| .+|++||+ +|+++++ |+ .. .+.++++||.|
T Consensus 636 ~vG~v~~G~V~~I~~fG----aFVel--~~g~eGLvHiSels~~----------rv---~~----~~d~~kvGD~V~VkV 692 (726)
T 4aid_A 636 EVGKIYDGKVVKVVDFG----AFVNF--FGAKDGLVHVSQISNE----------RV---AK----PSDVLKEGQMVKVKL 692 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcEEEEEEEEEeccE----EEEEE--CCCcEEEEEHHHcCcc----------cc---cC----ccccCCCCCEEEEEE
Confidence 46888999999999999 99999 78999999 7898743 12 22 23367999999
Q ss_pred EEEecccchhhhhhchhhhhhhHHhhhhccc
Q 024995 227 QEIQLSHSLIRKASKRHCNEYWNVFHETAIV 257 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~~~~~p~~~~~~~~~~ 257 (259)
++||. ++||+||+|++.++|++.+.+|.++
T Consensus 693 i~iD~-~grI~LS~K~~~~~~G~~~~~k~~~ 722 (726)
T 4aid_A 693 LGFDD-RGKTKLSMKVVDQETGEDLSKKEAA 722 (726)
T ss_dssp -------------------------------
T ss_pred EEECC-CCcEEEEEeecccCcchhhhhhhhh
Confidence 68887 6899999999999999999777553
No 49
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.48 E-value=3.9e-08 Score=76.47 Aligned_cols=72 Identities=7% Similarity=0.135 Sum_probs=54.1
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEEEccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
++|+++.|+|++|++|| +|++|. .+++.||+++++.. .|..... +.. .+++||.| +
T Consensus 20 ~~G~i~~G~V~~v~~fG----~fV~l~-~~~~~~l~~~~~~~----------~~~~~~~-~~~----~~~~Gd~V~vkV~ 79 (119)
T 1wi5_A 20 KPGMLLTGTVSSLEDHG----YLVDIG-VDGTRAFLPLLKAQ----------EYIRQKN-KGA----KLKVGQYLNCIVE 79 (119)
T ss_dssp CTTCEEEEEEEEECSSE----EEEECC-CSSCEEEEEHHHHH----------HHHHHHS-SSC----CCCTTCEEEEEEE
T ss_pred CCCCEEEEEEEEEeCce----EEEEEC-CCCeEEEEEEeccc----------ccccccC-ccC----EeCCCCEEEEEEE
Confidence 35788999999999999 999993 25888888877541 1433211 223 56999999 6
Q ss_pred EEecccchhhhhhchh
Q 024995 228 EIQLSHSLIRKASKRH 243 (259)
Q Consensus 228 ~v~~~~~~i~ls~k~~ 243 (259)
+||.++++|+||+|+.
T Consensus 80 ~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 80 KVKGNGGVVSLSVGHS 95 (119)
T ss_dssp ECCTTSCEEEEECCCC
T ss_pred EEeCCCCEEEEEEchh
Confidence 7888889999999973
No 50
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.28 E-value=5e-07 Score=75.41 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
.|+++.|+|+++++|| +|++| .+ ++||+ +|+++.+.-...++-..|+.. .+. ..+++||.| +
T Consensus 81 ~Gev~~G~V~~v~~~G----~fV~l--~~-~eglvhis~l~~~~~~~d~~~~~~~~~--~~~----~~~~~Gd~V~vkV~ 147 (187)
T 1go3_E 81 MYELIEGEVVDVVEFG----SFVRL--GP-LDGLIHVSQIMDDYVSYDPKREAIIGK--ETG----KVLEIGDYVRARIV 147 (187)
T ss_dssp TTCEEEEEEEEEETTE----EEEEC--SS-SEEEEEGGGSCSSCEEECCC--CEEET--TTC----CEECTTCEEEEEEE
T ss_pred CCCEEEEEEEEEeCcE----EEEEE--cC-ccEEEEhHHhCCCcceECCccceEEec--CCC----eEEcCCCEEEEEEE
Confidence 4778999999999999 99999 44 99999 677764432222222233321 122 356999999 6
Q ss_pred EEecccc-----hhhhhhch--hhhhhhHHhhhh
Q 024995 228 EIQLSHS-----LIRKASKR--HCNEYWNVFHET 254 (259)
Q Consensus 228 ~v~~~~~-----~i~ls~k~--~~~~p~~~~~~~ 254 (259)
+++.+.+ +|+||+|+ |-..+|-.-.++
T Consensus 148 ~vd~~~~~p~~~~I~lS~k~~~LG~~~w~~~~~~ 181 (187)
T 1go3_E 148 AISLKAERKRGSKIALTMRQPYLGKLEWIEEEKA 181 (187)
T ss_dssp EEECCC-----CEEEEECCSTTCEEHHHHHHHHH
T ss_pred EEEcccCCCCccEEEEEEcCCCCCcHHHHhhhhh
Confidence 8888766 89999999 556777554444
No 51
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.27 E-value=9.1e-07 Score=66.86 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=55.3
Q ss_pred CCCCCEEEEE--------eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEE
Q 024995 56 VNVEDIFVGR--------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (259)
Q Consensus 56 l~~G~iv~G~--------~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~ 127 (259)
.+.++..+|+ .|| |+.-+. .+.++|+|+|++++...
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~----gg~dvfvH~s~l~~~~~------------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDD----GSKDVFVHFSAGSSGAA------------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESS----SSCEEEEECCCSCSSSC-------------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCC----CCcEEEEEEEEEecCCc-------------------------------
Confidence 3456667777 588 887652 26899999999987642
Q ss_pred eccccCcchHhhhhhcCCCCccccCCCCccccceeeeccCCCccceeeeecccCCeeEEE-Ecccccc
Q 024995 128 KQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFE 194 (259)
Q Consensus 128 K~~~~~p~~~~~~~~~~~g~~~~~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~ 194 (259)
. .+.+. +|+.++++|.++++|| +|++| .++++||+ +|++++.
T Consensus 55 --~---------~~~l~--------~Ge~V~g~V~~i~~fG----~fv~l--~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 55 --V---------RGNPQ--------QGDRVEGKIKSITDFG----IFIGL--DGGIDGLVHLSDISWA 97 (101)
T ss_dssp --C---------CCCCC--------TTCEEEEEEEECCSEE----EEECT--TSCEEEEEEEEEEEEC
T ss_pred --c---------ccCCC--------CCCEEEEEEEEeCCcE----EEEEc--CCCceEEEEHHHCccC
Confidence 0 01122 3667999999999999 99888 78999999 8888743
No 52
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.25 E-value=1.3e-06 Score=86.03 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCCCCC--EEEEE-----eeeEEEEEccCCCCccEEEEEEceecCc--ccc----------cChhhhcCCCCeEEEEEEE
Q 024995 55 RVNVED--IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLI----------QDIRDILNEGDEVRVKVIK 115 (259)
Q Consensus 55 ~l~~G~--iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~--~~~----------~~~~~~~~~Gd~V~vkVl~ 115 (259)
.-++|+ +++|+ +||+||+|.. .|++||||+|+|++ +++ .+....|++||.|+|+|.+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~----~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~ 630 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVD----NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETT----TCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEE
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcC----CcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEE
Confidence 447888 88888 8999999953 58999999999973 321 1345679999999999999
Q ss_pred EeCCCCeeEEEEe
Q 024995 116 IDREKSRITLSIK 128 (259)
Q Consensus 116 id~~~~ri~lS~K 128 (259)
+|.++++|.+++-
T Consensus 631 vd~~~~~I~~~l~ 643 (644)
T 2id0_A 631 VRMETRSIIARPV 643 (644)
T ss_dssp EETTTTEEEEEEC
T ss_pred EeCCCCEEEEEEc
Confidence 9999999999873
No 53
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.25 E-value=6.5e-07 Score=93.11 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=58.1
Q ss_pred ccCCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee--
Q 024995 150 ISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV-- 226 (259)
Q Consensus 150 ~~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V-- 226 (259)
+.++|+++.|+|++|++|| +||+| .+|++||+ +|++++. +. +.++.. ++++||.|
T Consensus 899 ~l~~G~iv~G~V~~V~~fG----aFV~L--~~gveGLVHiSelsd~----------~~--v~~p~~----v~kvGd~V~v 956 (1219)
T 3psi_A 899 TFFKGSIIPVRVERFWHND----IICTT--NSEVECVVNAQRHAGA----------QL--RRPANE----IYEIGKTYPA 956 (1219)
T ss_dssp TSCTTCEEEEEEEEECSSC----EEEEC--TTSCEEEECTTSSSST----------TS--CSCSTT----TSCTTCEEEE
T ss_pred hCCCCCEEEEEEEEEecce----EEEEe--CCCceEEEEHHHcCCC----------cc--cCCHHH----cCCCCCEEEE
Confidence 3467999999999999999 99998 78999999 7888743 10 222333 66999999
Q ss_pred --EEEecccchhhhhhch
Q 024995 227 --QEIQLSHSLIRKASKR 242 (259)
Q Consensus 227 --~~v~~~~~~i~ls~k~ 242 (259)
++||.++++|+||||.
T Consensus 957 kVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 957 KVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp EEEEEEGGGTEEEEECCH
T ss_pred EEEEEECCCCEEEEEecH
Confidence 7999999999999996
No 54
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.16 E-value=8.6e-07 Score=73.57 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=57.6
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
.|++++|+|+++++|| +|+++ ++++||+ +|++..+.-..-++-..|... ..+ ..++.||.| +
T Consensus 81 ~Gev~~G~V~~v~~~G----~fv~l---~~~~glvh~s~l~~d~~~~d~~~~~~~g~--~~~----~~~~~Gd~VrvkV~ 147 (180)
T 4ayb_E 81 VQEVVEGEVLQVDNYG----VFVNL---GPMDGLVHISQITDDTLKYDNVRGIIFGE--KSK----KVIQKGDKVRARVI 147 (180)
T ss_dssp TTCEEEEEEEEEETTE----EEEEC---SSSEEEEEGGGSCSSCEEECSSSCCEEET--TTC----CCCCTTCEEEEEEE
T ss_pred CCCEEEEEEeeeccce----EEEEE---CCccceEEeeecCCCccccchhcceEEEe--ccC----eEECCCCEEEEEEE
Confidence 3778999999999999 99988 4699998 677765422111111122211 122 256999999 5
Q ss_pred EEeccc----chhhhhhch--hhhhhhHHhh
Q 024995 228 EIQLSH----SLIRKASKR--HCNEYWNVFH 252 (259)
Q Consensus 228 ~v~~~~----~~i~ls~k~--~~~~p~~~~~ 252 (259)
.|+.+. .+|+||||+ |-..+|-..+
T Consensus 148 ~v~~~~~~~~~rI~ls~k~~gLG~~~W~~~~ 178 (180)
T 4ayb_E 148 SVASTVTGRLPRIALTMRQPYLGKLEWITQA 178 (180)
T ss_dssp EECC-------CEEEECCSTTCEEHHHHTTC
T ss_pred EEeCCCCcccCcEEEEcCCCCCCCChhHhhh
Confidence 777653 379999999 6677776544
No 55
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.09 E-value=4.1e-07 Score=93.25 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred cCCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee---
Q 024995 151 SDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV--- 226 (259)
Q Consensus 151 ~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V--- 226 (259)
.++|+++.|+|++|++|| +||+| .+|++||+ +|++++. +. +.++.. ++++||.|
T Consensus 903 l~~G~iv~G~V~~V~~fG----aFV~L--~~gveGLVHiSelsd~----------~~--v~~~~~----v~kvGd~V~vk 960 (1030)
T 3psf_A 903 FFKGSIIPVRVERFWHND----IICTT--NSEVECVVNAQRHAGA----------QL--RRPANE----IYEIGKTYPAK 960 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCEEEEEEEEEccCe----EEEEe--CCCcEEEEEHHHcCCC----------cc--cCCHHH----cCCCCCEEEEE
Confidence 467999999999999999 99988 78999999 7888733 10 122333 67999999
Q ss_pred -EEEecccchhhhhhch
Q 024995 227 -QEIQLSHSLIRKASKR 242 (259)
Q Consensus 227 -~~v~~~~~~i~ls~k~ 242 (259)
++||.++++|+||||+
T Consensus 961 Vl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 961 VIYIDYANITAEVSLLD 977 (1030)
T ss_dssp -----------------
T ss_pred EEEEECCCCEEEEEech
Confidence 7899999999999997
No 56
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.06 E-value=5e-06 Score=70.44 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=52.1
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccc-------------------cChhhhcCCCCe
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-------------------QDIRDILNEGDE 108 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~-------------------~~~~~~~~~Gd~ 108 (259)
.-+..+|+++.|+ +||+||+|+ .++|++|++++.+++. .+....|++||.
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg------~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~ 149 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS------FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEE 149 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS------SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe------CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCE
Confidence 3467999999999 899999996 6899999999977653 344567999999
Q ss_pred EEEEEEEEeCCC
Q 024995 109 VRVKVIKIDREK 120 (259)
Q Consensus 109 V~vkVl~id~~~ 120 (259)
|++||.++|...
T Consensus 150 VrvrV~~v~~~~ 161 (203)
T 3ayh_B 150 IRFQIESEDFVD 161 (203)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEEEEEEEccc
Confidence 999999999743
No 57
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.05 E-value=4.9e-06 Score=76.12 Aligned_cols=79 Identities=10% Similarity=0.170 Sum_probs=56.0
Q ss_pred hhccCCC--CCCEEEEE--e-------eeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCC
Q 024995 51 KYSSRVN--VEDIFVGR--D-------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 119 (259)
Q Consensus 51 ~~~~~l~--~G~iv~G~--~-------~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~ 119 (259)
..+..++ +|++++|+ . +++||+|+... .+.+|+||.+|+. |.+.|++||.|+|.|++++.+
T Consensus 121 ~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~--~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~ 192 (366)
T 1k0r_A 121 RTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTET--KASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRG 192 (366)
T ss_dssp ------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSS--SCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECC
T ss_pred HHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCc--cceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecC
Confidence 3455565 99999999 3 58999997100 1499999999986 457899999999999999987
Q ss_pred CCeeEEEEeccccCcchH
Q 024995 120 KSRITLSIKQLEEDPLLE 137 (259)
Q Consensus 120 ~~ri~lS~K~~~~~p~~~ 137 (259)
++...+.+..+.++....
T Consensus 193 ~kgpqI~LSRT~p~lv~~ 210 (366)
T 1k0r_A 193 AREPLITLSRTHPNLVRK 210 (366)
T ss_dssp SSSCEEEEESSCHHHHHH
T ss_pred CCccEEEEEeCChHHHHH
Confidence 666666665555554433
No 58
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.04 E-value=4.9e-06 Score=79.55 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=60.1
Q ss_pred ccCCCCCCEEEEE-----ee--eEEEEEccCCCCccEEEEEEceecCcccc---------cChhhhcCCCCeEEEEEEEE
Q 024995 53 SSRVNVEDIFVGR-----DY--GAFIHLRFPDGLYHLTGLVHVSEVSWDLI---------QDIRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~--G~fV~l~~~~g~~gi~glv~isels~~~~---------~~~~~~~~~Gd~V~vkVl~i 116 (259)
.....+|++|.|+ ++ ||||+++ .|..||+|++++++.++ .++.+.+++||.|.|+|++.
T Consensus 40 ~~~~~vGnIY~GkV~rv~p~~~aAFVdiG-----~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke 114 (517)
T 2bx2_L 40 GHEQKKANIYKGKITRIEPSLEAAFVDYG-----AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKE 114 (517)
T ss_dssp SSCCCTTCEEEEEEEEEETTTTEEEEESS-----SSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEEC
T ss_pred CCcCCCCCEEEEEEEEeccCCceEEEEeC-----CCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEee
Confidence 3467899999999 77 9999998 58999999999988763 34667899999999999998
Q ss_pred eCCCCeeEEEEecc
Q 024995 117 DREKSRITLSIKQL 130 (259)
Q Consensus 117 d~~~~ri~lS~K~~ 130 (259)
...++.-.||..-.
T Consensus 115 ~~g~KGa~lTt~is 128 (517)
T 2bx2_L 115 ERGNKGAALTTFIS 128 (517)
T ss_dssp CCTTCCCEEESSCC
T ss_pred ccccCCceEEeeEE
Confidence 87767666665443
No 59
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.01 E-value=1.8e-06 Score=86.32 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=56.4
Q ss_pred cCCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee---
Q 024995 151 SDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV--- 226 (259)
Q Consensus 151 ~~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V--- 226 (259)
..+|+++.|+|++|++|| +||+| ..+++||+ +|++++. | +.++. .++++||.|
T Consensus 652 l~vG~iv~G~V~~V~~fG----aFV~l--~~~~eGLVhiS~Lsd~----------~---v~d~~----~~~~vGd~V~Vk 708 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFG----AFVDI--GVHQDGLVHISALSEK----------F---VKDPY----EVVKAGDIVKVK 708 (785)
T ss_dssp CCTTCBCCCEEEEEETTE----EEEEC--SSSSEEEEETTTSCSS----------C---CSCHH----HHCCTTCCCCCB
T ss_pred cCCCCEEEEEEEEEecCC----eEEEe--CCCcEEEEEHHHcCcc----------c---cCChh----heeCCCCEEEEE
Confidence 457999999999999999 99988 78999999 7887632 1 22222 366999998
Q ss_pred -EEEecccchhhhhhch
Q 024995 227 -QEIQLSHSLIRKASKR 242 (259)
Q Consensus 227 -~~v~~~~~~i~ls~k~ 242 (259)
++||.++++|+||||.
T Consensus 709 Vi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 709 VMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp EEEEETTTTEEEECCSS
T ss_pred EEEEECCCCEEEEEEec
Confidence 7999999999999995
No 60
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.94 E-value=1.2e-05 Score=60.67 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=48.6
Q ss_pred CCCEEEEEEEEEeCCCCEEEEEe-----------chhhHhhh-ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEE
Q 024995 22 TGSIISVKVIQANEEMKKLVFSE-----------KDAVWNKY-SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 84 (259)
Q Consensus 22 vG~~v~~~Vl~id~~~~~v~lS~-----------k~~~~~~~-~~~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~g 84 (259)
.++.+..+|..+|..++-=.++. ....+..+ ...+++|+++.+. +||+||+|. .+++|
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~-----~~~eG 87 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLD-----GGIDG 87 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTT-----SCEEE
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcC-----CCceE
Confidence 57778888888876554323332 22222211 2689999999999 799999997 38999
Q ss_pred EEEceecCcccc
Q 024995 85 LVHVSEVSWDLI 96 (259)
Q Consensus 85 lv~isels~~~~ 96 (259)
|||+|+|+|.++
T Consensus 88 lvhis~i~~~~~ 99 (101)
T 2bh8_A 88 LVHLSDISWAQA 99 (101)
T ss_dssp EEEEEEEEECCC
T ss_pred EEEHHHCccCcC
Confidence 999999999764
No 61
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.90 E-value=9e-06 Score=81.38 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=46.9
Q ss_pred CEEEEE-----eeeEEEEEccCCCCccEEEEEEceecC--cccc-----------cC----hhhhcCCCCeEEEEEEEEe
Q 024995 60 DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKID 117 (259)
Q Consensus 60 ~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels--~~~~-----------~~----~~~~~~~Gd~V~vkVl~id 117 (259)
+++.|+ +||+||.|.. +|++||||+++|+ .+++ .+ ....|++||.|+|+|+.+|
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~----~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPK----FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETT----TTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC---
T ss_pred eEEEEEEEEEECCeEEEEEeC----CCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEE
Confidence 688887 8999999973 4899999999996 4331 12 2578999999999999999
Q ss_pred CC---CCeeEEEEe
Q 024995 118 RE---KSRITLSIK 128 (259)
Q Consensus 118 ~~---~~ri~lS~K 128 (259)
.+ ++||.||+|
T Consensus 747 ~~~~~~~kI~lslk 760 (760)
T 2vnu_D 747 DPITSKRKAELLLK 760 (760)
T ss_dssp -----CCEEEC---
T ss_pred CccccCCcEEEEeC
Confidence 87 699999986
No 62
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.86 E-value=9.7e-06 Score=83.05 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=54.5
Q ss_pred CCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecC--cccc-----------cC----hhhhcCCCCeEEEEEEEE
Q 024995 59 EDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 59 G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels--~~~~-----------~~----~~~~~~~Gd~V~vkVl~i 116 (259)
|+++.|+ +||+||.|.. +|++|+||+++|+ .+++ .+ ....|++||.|+|+|..+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~----~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~v 962 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPK----FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSV 962 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTT----TCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCC
T ss_pred ceEEEEEEEEEcCCeEEEEEcC----CCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEE
Confidence 8899998 8999999973 4899999999997 4331 12 347899999999999999
Q ss_pred eCC---CCeeEEEEe
Q 024995 117 DRE---KSRITLSIK 128 (259)
Q Consensus 117 d~~---~~ri~lS~K 128 (259)
|.+ ++||.||+|
T Consensus 963 d~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 963 MDPITSKRKAELLLK 977 (977)
T ss_dssp CCSSSCCCCCCEEEC
T ss_pred cCcccCCCceEEEeC
Confidence 863 389999987
No 63
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.84 E-value=1.5e-05 Score=68.24 Aligned_cols=115 Identities=10% Similarity=0.139 Sum_probs=72.1
Q ss_pred CCCCCCCCCchhHhhhcc-cCCCCEEE-----EEEEEEeC-CCCEEEEEech----hhHhhhccCCCCCCEEEEE-----
Q 024995 2 SPSHSCKEPQKSIHEIAK-GLTGSIIS-----VKVIQANE-EMKKLVFSEKD----AVWNKYSSRVNVEDIFVGR----- 65 (259)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~-~~vG~~v~-----~~Vl~id~-~~~~v~lS~k~----~~~~~~~~~l~~G~iv~G~----- 65 (259)
.|++|.++....+.+.++ .+.|+.+. +.|.++.. ..++|.-..-. .......-+..+|++++|+
T Consensus 14 ~P~~f~~~l~~~i~~~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~vGEv~~G~Is~Vt 93 (218)
T 2ckz_B 14 PPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCT 93 (218)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCCTTCEEEEEEEEEE
T ss_pred CHHHcCchHHHHHHHHHHHHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCCCCCEEEEEEEEEc
Confidence 577776655555554444 34565443 33333332 22333211000 0112234478899999999
Q ss_pred eeeEEEEEccCCCCccEEEEEEceecCcccc--------------cChhhhcCCCCeEEEEEEEEeCCCC
Q 024995 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--------------QDIRDILNEGDEVRVKVIKIDREKS 121 (259)
Q Consensus 66 ~~G~fV~l~~~~g~~gi~glv~isels~~~~--------------~~~~~~~~~Gd~V~vkVl~id~~~~ 121 (259)
+||+||+|.+ .++|++|++++..+++ .+....|++||.|++||.++|...+
T Consensus 94 ~fGifVeL~g-----~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 94 AEGIKVSLLG-----IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp TTEEEEECTT-----SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred cCcEEEEccC-----ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 9999999952 5899999999976543 2335569999999999999998654
No 64
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=97.81 E-value=1.1e-05 Score=68.71 Aligned_cols=73 Identities=10% Similarity=0.023 Sum_probs=53.9
Q ss_pred CCCCccccceeeeccCCCccceeeeec------ccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCC
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELL------QEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGR 224 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~------~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~ 224 (259)
.+|+++.|+|++++++| +|++|. +..+++|++ +|+++... .+. -+....+++||
T Consensus 80 ~vGDvV~G~V~~v~~~~----a~V~I~~v~~~~L~~~~~GlIhisei~~~~-------------~~~--~~~~~~l~~GD 140 (209)
T 2nn6_I 80 DVGAIVTCKVSSINSRF----AKVHILYVGSMPLKNSFRGTIRKEDVRATE-------------KDK--VEIYKSFRPGD 140 (209)
T ss_dssp CTTCEEEEEEEEECSSE----EEEEEEESSSSCCCCSSCSCEEEEGGGTCS-------------SCC--CCGGGTCCSSS
T ss_pred CCCCEEEEEEEEEECce----EEEEECccccccccCCceeEEEHHHccccc-------------ccc--cchhhhcCCCC
Confidence 45888999999999999 999984 236889998 77776321 110 12444779999
Q ss_pred ee----EEEecccchhhhhhchh
Q 024995 225 QV----QEIQLSHSLIRKASKRH 243 (259)
Q Consensus 225 ~V----~~v~~~~~~i~ls~k~~ 243 (259)
.| +.++.+.++++||+|+.
T Consensus 141 ~V~akVisi~~~~~~i~LS~k~~ 163 (209)
T 2nn6_I 141 IVLAKVISLGDAQSNYLLTTAEN 163 (209)
T ss_dssp EEEEEEEEEETTTTEEEEECCSS
T ss_pred EEEEEEEEEeCCCCeEEEEEecC
Confidence 99 57776667899999973
No 65
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=97.68 E-value=2e-05 Score=67.35 Aligned_cols=87 Identities=3% Similarity=-0.149 Sum_probs=53.8
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----E
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----Q 227 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~ 227 (259)
+|++++|+|+++++|| +||+| .+ ++||+ +|++... -..-+.-..|.-... + .+++.||.| +
T Consensus 83 vGev~~G~V~~vt~fG----~FVel--g~-~dGlVhiS~l~d~-~~~d~~~~~w~~~~~--~----~~~~~Gd~VrVkV~ 148 (215)
T 2b8k_G 83 KGEVVDGTVVSCSQHG----FEVQV--GP-MKVFVTKHLMPQD-LTFNAGSNPPSYQSS--E----DVITIKSRIRVKIE 148 (215)
T ss_dssp TTEEEEEEEEEEETTE----EEEEC--TT-SEEEEEGGGSCSS-CCCBSSCSSCEEECS--S----CEEETTCEEEEEEE
T ss_pred CCCEEEEEEEEEecce----EEEEe--cC-cEEEEEHHHCCcc-ceeccccccceeecc--c----cEECCCCEEEEEEE
Confidence 4888999999999999 99999 66 99999 6776421 000001011111111 1 257999999 6
Q ss_pred EEecccc---hhhhhhchhhhhhhHHhhhh
Q 024995 228 EIQLSHS---LIRKASKRHCNEYWNVFHET 254 (259)
Q Consensus 228 ~v~~~~~---~i~ls~k~~~~~p~~~~~~~ 254 (259)
++|.+.+ +|. |||+----||+....+
T Consensus 149 ~vd~~~~~i~~Ig-Smk~~~LG~~~~~~~~ 177 (215)
T 2b8k_G 149 GCISQVSSIHAIG-SIKEDYLGAISHEKRR 177 (215)
T ss_dssp EEEEETTEEEEEE-ECCSTTCEEC------
T ss_pred EEEcCCCccEEEE-EcCCCCCCCcchhhHH
Confidence 8888764 687 8988555566544333
No 66
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.65 E-value=2.5e-05 Score=70.17 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=56.3
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcc----cc------cChhhhcCCCCeEEEEEEEEeCC
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LI------QDIRDILNEGDEVRVKVIKIDRE 119 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~----~~------~~~~~~~~~Gd~V~vkVl~id~~ 119 (259)
.+++|++|.|+ ++|+||+|+ ....+++|+|+++.. +. .+..+.|++||.|.|+|++++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~-----s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~- 165 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETN-----SRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS- 165 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECS-----SSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-
T ss_pred CCCCCCEEEEEEEEEeCceEEEEEC-----CCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-
Confidence 67999999998 899999997 357899999998752 22 2456789999999999999995
Q ss_pred CCeeEEEEec
Q 024995 120 KSRITLSIKQ 129 (259)
Q Consensus 120 ~~ri~lS~K~ 129 (259)
.+++.||+|+
T Consensus 166 ~~~i~LStr~ 175 (308)
T 2nn6_H 166 DGAVSLHTRS 175 (308)
T ss_dssp TTEEEEECCS
T ss_pred CCCEEEEecC
Confidence 7899999875
No 67
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.63 E-value=4e-05 Score=63.00 Aligned_cols=73 Identities=5% Similarity=-0.047 Sum_probs=47.5
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-Eccccccccccchhhh--hhcccCCCCCcceeeeccCCCee---
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQ--LWLSNAPPSGKKFTLLARAGRQV--- 226 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~G~~V--- 226 (259)
.|++++|+|+++++|| +|++| .+ ++||+ +|++...- ..-+.-+ .|.. . +. +++.||.|
T Consensus 83 ~Gev~~G~V~~v~~fG----~FV~l--~~-~dglvhis~l~~~~-~~d~~~~~~~~~~--~--~~----~~~~Gd~V~vk 146 (171)
T 1y14_B 83 KGEVVDGTVVSCSQHG----FEVQV--GP-MKVFVTKHLMPQDL-TFNAGSNPPSYQS--S--ED----VITIKSRIRVK 146 (171)
T ss_dssp TTCEEEEEEEEEETTE----EEEEE--TT-EEEEEEGGGSCTTC-EECC-----CEEC--S--SC----EECTTCEEEEE
T ss_pred CCCEEEEEEEEEecCE----EEEEe--cC-eEEEEEHHHCCCCc-eECcccCceEEec--c--ce----EECCCCEEEEE
Confidence 3778999999999999 99999 67 99999 67664210 0000111 1221 1 12 57999999
Q ss_pred -EEEecccc---hhhhhhch
Q 024995 227 -QEIQLSHS---LIRKASKR 242 (259)
Q Consensus 227 -~~v~~~~~---~i~ls~k~ 242 (259)
+++|.+.+ +|. |||+
T Consensus 147 V~~vd~~~~~~~~ig-sm~~ 165 (171)
T 1y14_B 147 IEGCISQVSSIHAIG-SIKE 165 (171)
T ss_dssp EEEEEEETTEEEEEE-ECCS
T ss_pred EEEEEcCCCCcEEEE-EcCC
Confidence 67887764 455 6654
No 68
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.63 E-value=7.6e-06 Score=74.49 Aligned_cols=107 Identities=11% Similarity=0.016 Sum_probs=68.3
Q ss_pred hhcCCCCeEEEEEEEEeCCCCeeEEEEeccccCcchHhh-hhhcCCCCccccCCCCccccceeeeccCCCccceeeeecc
Q 024995 101 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL-EKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (259)
Q Consensus 101 ~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~~p~~~~~-~~~~~~g~~~~~~~g~~v~G~V~~i~~~G~~~~~fv~l~~ 179 (259)
..+.+||.+.+.|...|. .+....+.|+....-+.+.. +..+. ......|++++|+|.++.++| +|+.|
T Consensus 85 ~~~~vGd~ie~~I~~~df-gR~aa~~aKqvi~qkireaere~i~~---e~~~~~GeIV~G~V~ri~~~~----v~VDl-- 154 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNF-GRIAAQTAKQVLIQRIRELEKEKQFE---KYSELKGTVTTAEVIRVMGEW----ADIRI-- 154 (344)
T ss_dssp TTCCTTCEEEEECCCCCS-SSCSGGGHHHHHHHHHHHHTTCCSSC---CTTCCTTCEEEEEEEEECSSE----EEEEE--
T ss_pred ccccCCCEEEEEEccccC-ccHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcCCCEEEEEEEEEecCc----EEEEe--
Confidence 347899999999988876 33333444554322222110 11111 111236889999999999998 99888
Q ss_pred cCCeeEEEE-ccccccccccchhhhhhcccCCCCCcceeeeccCCCee----EEEecccc--hhhhhhc
Q 024995 180 EDGIDDVRI-TRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----QEIQLSHS--LIRKASK 241 (259)
Q Consensus 180 ~~gv~gl~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~~v~~~~~--~i~ls~k 241 (259)
++++|+++ +++. +.. .+++||.| ++|+.+++ .|.||.+
T Consensus 155 -Gk~EgiLp~sE~i-------------------p~E----~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 155 -GKLETRLPKKEWI-------------------PGE----EIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp -TTEEEEEEGGGSC-------------------TTC----CCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred -CCeEEEEeHHHcC-------------------CCc----CCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 49999994 5543 222 34899999 67887665 4666655
No 69
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=97.58 E-value=4.8e-05 Score=63.08 Aligned_cols=64 Identities=5% Similarity=-0.067 Sum_probs=48.8
Q ss_pred CCccccceeeeccCCCccceeeeecccC----------CeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccC
Q 024995 154 SSMSSSNSNTIEPLPGLGAIFEELLQED----------GIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARA 222 (259)
Q Consensus 154 g~~v~G~V~~i~~~G~~~~~fv~l~~~~----------gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 222 (259)
|+++.|+|++|.++| +|++| .+ +++|++ +|+++.+. .. +....+++
T Consensus 58 GdiV~G~V~~V~~~g----a~V~I--~~v~~~~~~~~~~~~Gll~isei~~~~-------------~~----~~~~~~~~ 114 (179)
T 3m7n_A 58 GDVVLGRVVDLRNSI----ALIEV--SSKKGENRGPSNRGIGILHVSNVDEGY-------------VK----EISEAVGY 114 (179)
T ss_dssp TCEEEEEEEEECSSE----EEEEE--EEETTCCSCCTTCEEEEEEGGGTTSSC-------------CS----SGGGTCCT
T ss_pred CCEEEEEEEEEeCCc----EEEEE--ccccCcccccccCeeEEEEHHHcCcch-------------hh----CHhhcCCC
Confidence 666999999999999 99999 44 899999 67766321 11 24447799
Q ss_pred CCeeE-EEecccchhhhhhch
Q 024995 223 GRQVQ-EIQLSHSLIRKASKR 242 (259)
Q Consensus 223 G~~V~-~v~~~~~~i~ls~k~ 242 (259)
||.|. +|.. ++++||+|.
T Consensus 115 GD~V~akVi~--~~i~LS~k~ 133 (179)
T 3m7n_A 115 LDILKARVIG--DNLRLSTKE 133 (179)
T ss_dssp TCEEEEEEEE--TTTEEECCS
T ss_pred CCEEEEEEEC--CeEEEEEec
Confidence 99993 4433 889999997
No 70
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.56 E-value=0.00011 Score=60.85 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=56.1
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCc-cEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEE
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLY-HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g~~-gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~ 127 (259)
..++||+|.|. .++++|+|+ . ...|++|++++. ....+....|++||.|.|+|..++. ...+.||.
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~-----~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc 75 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQ-----NFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIEC 75 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESS-----TTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEES
T ss_pred cCCCcCEEEEEEEEEECcEEEEEEC-----CCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEe
Confidence 56899999999 789999998 4 589999999986 3346677889999999999999986 57888884
No 71
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.39 E-value=0.0005 Score=59.71 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=52.4
Q ss_pred CCCCCEEEEE--e-------eeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCC--CeeE
Q 024995 56 VNVEDIFVGR--D-------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK--SRIT 124 (259)
Q Consensus 56 l~~G~iv~G~--~-------~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~--~ri~ 124 (259)
-++|++++|+ . ..+||+++..+ .+.+|+||.+|+. |.+.|++||.|+|.|++++... .+|.
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~--~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIi 76 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARGLVVVRIGTET--KASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLIT 76 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECSSS--SCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCC--cceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEE
Confidence 4689999998 2 26999997100 0499999999985 4678999999999999999754 6899
Q ss_pred EEEec
Q 024995 125 LSIKQ 129 (259)
Q Consensus 125 lS~K~ 129 (259)
||...
T Consensus 77 LSRt~ 81 (251)
T 2asb_A 77 LSRTH 81 (251)
T ss_dssp EESSC
T ss_pred EEecc
Confidence 99754
No 72
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=97.37 E-value=0.00013 Score=59.94 Aligned_cols=76 Identities=5% Similarity=0.072 Sum_probs=48.7
Q ss_pred CCCccccceeeeccCCCccceeeeecccCCeeEEE-Ecccccccc-ccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 153 SSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKR-VVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
.|++++|+|+++++|| +|++| +.++||+ +|++...-+ ........|... ... ..++.||.|
T Consensus 81 ~Gev~~G~V~~v~~fG----~fV~l---~~~~glvhis~l~~~~~~d~~~~~~~~~~~--~~~----~~~~~Gd~V~vkV 147 (172)
T 2c35_B 81 KGEVVDAVVTQVNKVG----LFTEI---GPMSCFISRHSIPSEMEFDPNSNPPCYKTM--DED----IVIQQDDEIRLKI 147 (172)
T ss_dssp TTCEEEEEEEEEETTE----EEEEE---TTEEEEEEGGGSCTTEEEESSSSSCEEEET--TSC----SEEETTCEEEEEE
T ss_pred CCCEEEEEEEEEeCCE----EEEEE---CCEEEEEEHHHCCCCcEECCCCCccEEEeC--CCC----EEECCCCEEEEEE
Confidence 3777999999999999 99999 4678999 666642100 000111123321 112 256999999
Q ss_pred EEEecccc---hhhhhhch
Q 024995 227 QEIQLSHS---LIRKASKR 242 (259)
Q Consensus 227 ~~v~~~~~---~i~ls~k~ 242 (259)
.++|.+++ +|. |||+
T Consensus 148 ~~vd~~~~~~~~ig-sm~~ 165 (172)
T 2c35_B 148 VGTRVDKNDIFAIG-SLMD 165 (172)
T ss_dssp EEEEEETTEEEEEE-ECCS
T ss_pred EEEEcCCCCcEEEE-EecC
Confidence 68888765 566 7775
No 73
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.16 E-value=0.00019 Score=59.08 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=47.6
Q ss_pred CCccccceeeeccCCCccceeeeecccCCeeEEE-Eccccccccccch--hhhhhcccCCCCCcceeeeccCCCee----
Q 024995 154 SSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQ--DLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 154 g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
|++++|+|+++++|| +|++| +.++||+ +|++.. ....-+ +...| ...+. .++.||.|
T Consensus 85 Gev~~G~V~~v~~fG----~FV~l---~~~~glVh~s~l~~-~~~~d~~~~~~~~----~~~~~----~~~~Gd~VrvkV 148 (172)
T 3h0g_G 85 GEVVDAIVTTVNKMG----FFANI---GPLNVFVSSHLVPP-DMKFDPTANPPNY----SGEDQ----VIEKGSNVRLKI 148 (172)
T ss_dssp TCEEECCCCEEETTE----EECCB---TTBCCEEEGGGSCT-TCCCBSSSSSCBE----ESSSC----EECSSCCEEEEE
T ss_pred CCEEEEEEEEEEcce----EEEEe---CCeEEEEEHHHCCC-ccccCcccccceE----ecCCc----EECCCCEEEEEE
Confidence 777999999999999 99998 4588999 666642 111111 01112 11222 56999999
Q ss_pred EEEecccc---hhhhhhch
Q 024995 227 QEIQLSHS---LIRKASKR 242 (259)
Q Consensus 227 ~~v~~~~~---~i~ls~k~ 242 (259)
.+++.+++ +|. |||+
T Consensus 149 ~~vd~~~~~~~~Ig-tm~~ 166 (172)
T 3h0g_G 149 VGTRTDATEIFAIA-TMKE 166 (172)
T ss_dssp EEEEESSSCEEEEE-ECCS
T ss_pred EEEECCCCCceEEE-EcCC
Confidence 68888874 466 6664
No 74
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=97.14 E-value=0.00025 Score=61.90 Aligned_cols=70 Identities=7% Similarity=-0.078 Sum_probs=50.7
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
.+|+++.|+|+++.++| +||+| ..+.+|++ +|+++.. | .+.. .+....+++||.|
T Consensus 73 ~~GDiV~G~V~~v~~~g----a~VdI--~~~~~GlL~isei~~~----------~---~~~~-~~~~~~l~vGD~V~arV 132 (251)
T 2je6_I 73 KINDIVIGLVEDVEIYG----WVVDI--KAPYKAYLPASNLLGR----------S---INVG-EDLRRYLDVGDYVIARI 132 (251)
T ss_dssp CTTCEEEEEEEEECSSE----EEEEC--SSSSCEEEEHHHHHTS----------C---CCTT-CCCSSSCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCce----EEEEc--CCCeEEEEEHHHhcCC----------c---cccc-cchhhcCCCCCEEEEEE
Confidence 35888999999999999 99988 67899999 6776521 1 1111 2344578999999
Q ss_pred EEEecccchhhhhhch
Q 024995 227 QEIQLSHSLIRKASKR 242 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~ 242 (259)
+.++.+ .++.||+|+
T Consensus 133 i~v~~~-~~i~LS~r~ 147 (251)
T 2je6_I 133 ENFDRS-IDPVLSVKG 147 (251)
T ss_dssp EEEETT-EEEEEECCS
T ss_pred EEECCC-CcEEEEEcc
Confidence 566644 478888875
No 75
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=97.07 E-value=0.00031 Score=60.63 Aligned_cols=71 Identities=7% Similarity=0.020 Sum_probs=49.9
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
++|+++.|+|+++.++| +|++| ..+.+|++ +|+++.. + .+.........+++||.|
T Consensus 65 ~~GDiV~G~V~~v~~~~----~~V~I--~~~~~g~l~isei~~~-~------------~~~~~~~~~~~l~~GD~V~a~V 125 (235)
T 2z0s_A 65 QAGDVVIGLIQSVGIMN----WFVDI--NSPYVAVLSVQDFLGR-P------------FNPAVDDMQSLLKVGDYIKAKV 125 (235)
T ss_dssp CTTCCEEEEEEEECSSE----EEEEC--SSSSCEEEEHHHHHTS-C------------CCTTTTCCTTSSCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCe----EEEEe--CCCeEEEEEHHHhCCC-c------------cccchhhHhhcCCCCCEEEEEE
Confidence 45888999999999999 99988 67899999 6776521 1 111112234467999999
Q ss_pred EEEecccchhhhhhch
Q 024995 227 QEIQLSHSLIRKASKR 242 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~ 242 (259)
+.++.+ .++.||+|+
T Consensus 126 i~v~~~-~~i~LS~k~ 140 (235)
T 2z0s_A 126 VAFDKT-RSPLLTVQG 140 (235)
T ss_dssp EEECTT-SCEEEECCS
T ss_pred EEECCC-CcEEEEEec
Confidence 455543 368888875
No 76
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.76 E-value=0.001 Score=57.21 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=48.5
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV---- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V---- 226 (259)
.+|+++.|+|+.+.++| +|++| ....+|++ +|+++... |. .+....+++||.|
T Consensus 56 ~~GDiV~G~V~~v~~~~----a~V~I--~~~~~g~l~isev~~~~---------~~-------~~~~~~l~~GD~V~arV 113 (229)
T 2ba0_A 56 SVGDVVIGIIREVAANG----WAVDI--YSPYQAFLPVSENPEMK---------PN-------KKPNEVLDIGDAIIAKV 113 (229)
T ss_dssp CTTCEEEEEEEEECSSE----EEEEC--SSSSCEEEEGGGCTTCC---------TT-------SCGGGTCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCe----EEEEe--CCCeEEEEEHHHccccc---------cc-------cchhcccCCCCEEEEEE
Confidence 35888999999999999 99988 66799999 66665211 11 1233467999999
Q ss_pred EEEecccchhhhhhch
Q 024995 227 QEIQLSHSLIRKASKR 242 (259)
Q Consensus 227 ~~v~~~~~~i~ls~k~ 242 (259)
+.++.+ .++.||+|+
T Consensus 114 i~v~~~-~~i~LS~r~ 128 (229)
T 2ba0_A 114 LNIDPK-MKVTLTMKD 128 (229)
T ss_dssp EEECTT-CCEEEECCS
T ss_pred EEECCC-CcEEEEEcc
Confidence 455543 467777765
No 77
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=96.44 E-value=0.0022 Score=62.93 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=51.4
Q ss_pred CCC--ccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcce----eeeccCCCe
Q 024995 153 SSS--MSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKF----TLLARAGRQ 225 (259)
Q Consensus 153 ~g~--~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~G~~ 225 (259)
+|+ .++|+|++|++|| +||+|. +.|++||+ +|++...+ + |..... ....+ ...++.||.
T Consensus 558 vGe~~~f~g~V~~V~~~G----~fV~L~-~~gieGlVhis~l~~~~-----d---~~~~d~-~~~~l~~~~~~~~~lGD~ 623 (644)
T 2id0_A 558 AGTDTRFAAEIVDISRGG----MRVRLV-DNGAIAFIPAPFLHAVR-----D---ELVCSQ-ENGTVQIKGETVYKVTDV 623 (644)
T ss_dssp TTSCCCEEEEEEEEETTE----EEEEET-TTCCEEEEEGGGTCSCG-----G---GEEEET-TTTEEEETTEEEEETTCE
T ss_pred cCCCceEEEEEEEEeCCc----eEEEEc-CCcEEEEEEchhccCcC-----c---eeEEcc-cccEEEecCCCEeCCCCE
Confidence 466 7999999999999 999983 36999999 67765210 1 321110 00101 225799999
Q ss_pred e----EEEecccchhhhhh
Q 024995 226 V----QEIQLSHSLIRKAS 240 (259)
Q Consensus 226 V----~~v~~~~~~i~ls~ 240 (259)
| .+||.++++|.+++
T Consensus 624 V~VkV~~vd~~~~~I~~~l 642 (644)
T 2id0_A 624 IDVTIAEVRMETRSIIARP 642 (644)
T ss_dssp EEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEE
Confidence 9 68999999998876
No 78
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=95.70 E-value=0.0041 Score=62.17 Aligned_cols=74 Identities=8% Similarity=-0.049 Sum_probs=42.6
Q ss_pred CccccceeeeccCCCccceeeeecccC-CeeEEE-Ecccc--ccccccchhhhhhccc-----CCCCCcceeeeccCCCe
Q 024995 155 SMSSSNSNTIEPLPGLGAIFEELLQED-GIDDVR-ITRQG--FEKRVVSQDLQLWLSN-----APPSGKKFTLLARAGRQ 225 (259)
Q Consensus 155 ~~v~G~V~~i~~~G~~~~~fv~l~~~~-gv~gl~-~s~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~G~~ 225 (259)
+.+.|+|.+|++|| +||+| .+ |++||+ +|++. .+. + .|... .....+.....++.||.
T Consensus 671 ~~~~g~V~~V~~~G----~fV~l--~~~giEGlVhis~L~~~~d~------~-~fd~~~~~l~g~~~~~~~~~~~~lGD~ 737 (760)
T 2vnu_D 671 STETGYVIKVFNNG----IVVLV--PKFGVEGLIRLDNLTEDPNS------A-AFDEVEYKLTFVPTNSDKPRDVYVFDK 737 (760)
T ss_dssp SEEEEEEEEEETTE----EEEEE--TTTTEEEEEEHHHHCSCGGG------C-EEETTTTEEEECCTTCSSCEEEETTCE
T ss_pred eEEEEEEEEEECCe----EEEEE--eCCCcEEEEEeccccCCCce------e-EEcccccEEEEecCCCccCcEEecCCE
Confidence 56999999999999 99999 66 999999 67764 110 0 01100 00110001235699999
Q ss_pred e----EEEecc---cchhhhhhc
Q 024995 226 V----QEIQLS---HSLIRKASK 241 (259)
Q Consensus 226 V----~~v~~~---~~~i~ls~k 241 (259)
| ..+|.+ ++||+|+||
T Consensus 738 V~VkV~~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 738 VEVQVRSVMDPITSKRKAELLLK 760 (760)
T ss_dssp EEEEEC--------CCEEEC---
T ss_pred EEEEEEEEECccccCCcEEEEeC
Confidence 9 467777 588999987
No 79
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.57 E-value=0.01 Score=52.60 Aligned_cols=67 Identities=7% Similarity=-0.043 Sum_probs=55.2
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
..++||+|.|+ ...+.|+|. ....|++|.+++. ....+....|++||.|.|+|++++. .+.+.||..
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~-----s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVG-----GSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECS-----SSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEEC-----CCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 57999999999 456899998 3678999999876 2345677889999999999999985 567888873
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.43 E-value=0.017 Score=52.76 Aligned_cols=71 Identities=7% Similarity=0.033 Sum_probs=52.1
Q ss_pred CCCCccccceee----eccCCCccceeeeecccC---CeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCC
Q 024995 152 DSSSMSSSNSNT----IEPLPGLGAIFEELLQED---GIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAG 223 (259)
Q Consensus 152 ~~g~~v~G~V~~----i~~~G~~~~~fv~l~~~~---gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G 223 (259)
..|++++|+|.+ +.+.+ +|+.| .. +++|++ .+++. |...| ++|
T Consensus 129 r~GeIVtG~V~r~~~~v~~~~----v~VdL--G~~~~k~EgiLP~~Eqi-------------------P~E~~----~~G 179 (366)
T 1k0r_A 129 REGEIVAGVIQRDSRANARGL----VVVRI--GTETKASEGVIPAAEQV-------------------PGESY----EHG 179 (366)
T ss_dssp CTTCEEEEEEECCHHHHHTTC----EEEEE--CCSSSCEEEEECGGGSC-------------------TTCCC----CTT
T ss_pred cCCCEEEEEEEEccccccCCe----EEEEe--CCCccceEEEEcHHHcC-------------------CCccC----CCC
Confidence 468999999999 99888 99888 43 599999 55543 22334 999
Q ss_pred Cee----EEEecccchhhhhhchhhhhhhHHh
Q 024995 224 RQV----QEIQLSHSLIRKASKRHCNEYWNVF 251 (259)
Q Consensus 224 ~~V----~~v~~~~~~i~ls~k~~~~~p~~~~ 251 (259)
|.| ++|+.+.+...+.+.+..++....+
T Consensus 180 DrVkvyV~~V~~~~kgpqI~LSRT~p~lv~~L 211 (366)
T 1k0r_A 180 NRLRCYVVGVTRGAREPLITLSRTHPNLVRKL 211 (366)
T ss_dssp CEEEEEEEEEECCSSSCEEEEESSCHHHHHHH
T ss_pred CEEEEEEEEEecCCCccEEEEEeCChHHHHHH
Confidence 999 6888887776666666666655544
No 81
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.0076 Score=61.80 Aligned_cols=75 Identities=8% Similarity=-0.048 Sum_probs=47.6
Q ss_pred CCccccceeeeccCCCccceeeeecccC-CeeEEE-Ecccc--ccccccchhhhhhccc-----CCCCCcceeeeccCCC
Q 024995 154 SSMSSSNSNTIEPLPGLGAIFEELLQED-GIDDVR-ITRQG--FEKRVVSQDLQLWLSN-----APPSGKKFTLLARAGR 224 (259)
Q Consensus 154 g~~v~G~V~~i~~~G~~~~~fv~l~~~~-gv~gl~-~s~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~G~ 224 (259)
|+.++|.|.+|++|| +||+| .+ |++|++ +|++. .+. + .|... .....+.....++.||
T Consensus 887 ge~~~g~V~~V~~~G----~fV~L--~~~giEGlVhis~L~~~~d~------y-~fde~~~~L~g~~~~g~~~~~~~lGD 953 (977)
T 2wp8_J 887 ESTETGYVIKVFNNG----IVVLV--PKFGVEGLIRLDNLTEDPNS------A-AFDEVEYKLTFVPTNSDKPRDVYVFD 953 (977)
T ss_dssp TCEEEEEEEEECSSE----EEEEC--TTTCCEEEEEGGGTCSCGGG------C-EEETTTTEEEECCTTCCSCEEEETTC
T ss_pred ceEEEEEEEEEcCCe----EEEEE--cCCCeEEEEEeccccCCCce------e-EEcccccEEEeecCCCccCcEEccCC
Confidence 667999999999999 99998 66 999999 67764 110 0 01100 0000000113569999
Q ss_pred ee----EEEecc---cchhhhhhc
Q 024995 225 QV----QEIQLS---HSLIRKASK 241 (259)
Q Consensus 225 ~V----~~v~~~---~~~i~ls~k 241 (259)
.| ..++.+ ++||+|+||
T Consensus 954 ~V~VkV~~vd~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 954 KVEVQVRSVMDPITSKRKAELLLK 977 (977)
T ss_dssp EEEEEECCCCCSSSCCCCCCEEEC
T ss_pred EEEEEEEEEcCcccCCCceEEEeC
Confidence 99 244543 268999987
No 82
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=95.21 E-value=0.026 Score=47.39 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=44.4
Q ss_pred CCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCC--CcceeeeccCCCee----
Q 024995 154 SSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPS--GKKFTLLARAGRQV---- 226 (259)
Q Consensus 154 g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~G~~V---- 226 (259)
|++++|+|+++++|| +|++| +.++|++ ++++..+.-..-++-..|+-.-+.+ +.+-...++.||.|
T Consensus 82 GEv~~G~Vs~vt~~G----ifV~l---g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 82 GEVMLGKIKSCSEEG----IRVTI---SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp TCEEEEEEEEEETTE----EEEEC---SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred CCEEEEEEEEEeccE----EEEEE---eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 777999999999999 99998 4789998 6666543222222222333211000 01224467999999
Q ss_pred EEEecc
Q 024995 227 QEIQLS 232 (259)
Q Consensus 227 ~~v~~~ 232 (259)
..++..
T Consensus 155 ~~v~~~ 160 (203)
T 3ayh_B 155 ESEDFV 160 (203)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 455553
No 83
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.02 Score=48.74 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=45.2
Q ss_pred CCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCCCee----EE
Q 024995 154 SSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV----QE 228 (259)
Q Consensus 154 g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V----~~ 228 (259)
|++++|+|+++++|| +|++| ++.++|++ ++++..+.-..-++-..|+-..+ ++ -...++.||.| ..
T Consensus 82 GEv~~G~Is~Vt~fG----ifVeL--~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~-e~--t~~~~~~Gd~VrvrV~~ 152 (218)
T 2ckz_B 82 GEIVTGWISKCTAEG----IKVSL--LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMD-EE--TKLYFDVNEKIRFRIER 152 (218)
T ss_dssp TCEEEEEEEEEETTE----EEEEC--TTSCCCEEEETTTSCTTCEEETTTTEEEEECC-----CEEEECTTCEEEEEEEE
T ss_pred CCEEEEEEEEEccCc----EEEEc--cCccceEEEcHHHCCCCcEEcCcCceEEeecc-cc--CCcEEcCCCEEEEEEEE
Confidence 778999999999999 99999 45689998 66665332111112122332110 11 13367999999 46
Q ss_pred Eecccc
Q 024995 229 IQLSHS 234 (259)
Q Consensus 229 v~~~~~ 234 (259)
++...+
T Consensus 153 v~~~~~ 158 (218)
T 2ckz_B 153 EVFVDV 158 (218)
T ss_dssp EEECCC
T ss_pred EEcccC
Confidence 666554
No 84
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=94.93 E-value=0.036 Score=52.33 Aligned_cols=60 Identities=13% Similarity=0.298 Sum_probs=48.4
Q ss_pred CCCCCEEEEEeeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEE
Q 024995 56 VNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (259)
Q Consensus 56 l~~G~iv~G~~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~ 127 (259)
-..|+.+. |+||++. +.+|+||++++.... .....|++||.|+|+|.++|..+++|.+..
T Consensus 401 ~~~g~~f~----g~vv~l~------~~~glV~v~~l~~d~--~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 401 AQPERVWD----AVVVDRR------GAQATLLIPDLAFDV--QVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp TCTTCCEE----EEEEEEE------TTEEEEEEGGGTEEE--EEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred hCCCCEEE----EEEEEEe------CcEEEEEECCCCeEE--ecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 36788886 4688885 468999999998652 223569999999999999999999998865
No 85
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=93.64 E-value=0.043 Score=52.40 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=39.9
Q ss_pred CCCccccceeeeccC--CCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCC--CCCcceeeeccCCCee
Q 024995 153 SSSMSSSNSNTIEPL--PGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAP--PSGKKFTLLARAGRQV 226 (259)
Q Consensus 153 ~g~~v~G~V~~i~~~--G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~G~~V 226 (259)
+|.++.|+|++|.|+ | +||++ .+|-.||+ .|+++.+. ..... ....++..++++||.|
T Consensus 45 vGnIY~GkV~rv~p~~~a----AFVdi--G~gk~gfLhisei~~~~----------~~~~~~~~~~~~i~d~lk~Gq~V 107 (517)
T 2bx2_L 45 KANIYKGKITRIEPSLEA----AFVDY--GAERHGFLPLKEIAREY----------FPANYSAHGRPNIKDVLREGQEV 107 (517)
T ss_dssp TTCEEEEEEEEEETTTTE----EEEES--SSSSCEEEEGGGSCGGG----------CC-------CCCGGGTCCTTCEE
T ss_pred CCCEEEEEEEEeccCCce----EEEEe--CCCcEEEEEHHHcChhh----------hccccccccccchhhhccCCCEE
Confidence 477799999999998 7 99998 88999999 67765321 10000 0011345578999999
No 86
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=93.41 E-value=0.032 Score=49.86 Aligned_cols=75 Identities=7% Similarity=0.056 Sum_probs=46.4
Q ss_pred CCCCccccceeeeccCCCccceeeeecccCCeeEEE-EccccccccccchhhhhhcccCCC--CCcceeeeccCCCee--
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR-ITRQGFEKRVVSQDLQLWLSNAPP--SGKKFTLLARAGRQV-- 226 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~G~~V-- 226 (259)
.+|++|.|+|+++.+++ +|++| .....|++ +|+++++. .+.+... +..+....|++||.|
T Consensus 94 ~vGDvViG~Vt~V~~~~----a~VdI--~s~~~~~l~iS~v~f~g---------g~iR~~~~~D~~~m~~~l~vGDlV~A 158 (308)
T 2nn6_H 94 EVGDIVVGRITEVQQKR----WKVET--NSRLDSVLLLSSMNLPG---------GELRRRSAEDELAMRGFLQEGDLISA 158 (308)
T ss_dssp CSSBCCCEEEEEEETTE----EEEEC--SSSSCEEEESSCCC----------------------CHHHHHHSCSSCEECC
T ss_pred CCCCEEEEEEEEEeCce----EEEEE--CCCcCCceechhhcccc---------ceeecccchhhhhhhccCCCCCEEEE
Confidence 35888999999999999 99988 44567776 67765431 1111110 011233467999999
Q ss_pred --EEEecccchhhhhhch
Q 024995 227 --QEIQLSHSLIRKASKR 242 (259)
Q Consensus 227 --~~v~~~~~~i~ls~k~ 242 (259)
+.++. ...+.||+|+
T Consensus 159 rVisv~~-~~~i~LStr~ 175 (308)
T 2nn6_H 159 EVQAVFS-DGAVSLHTRS 175 (308)
T ss_dssp EEEEEET-TTEEEEECCS
T ss_pred EEEEcCC-CCCEEEEecC
Confidence 55552 3457777774
No 87
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=89.33 E-value=0.37 Score=41.65 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=43.2
Q ss_pred CCCCccccceee----eccCCCccceeeeecccC---CeeEEE-EccccccccccchhhhhhcccCCCCCcceeeeccCC
Q 024995 152 DSSSMSSSNSNT----IEPLPGLGAIFEELLQED---GIDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAG 223 (259)
Q Consensus 152 ~~g~~v~G~V~~----i~~~G~~~~~fv~l~~~~---gv~gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G 223 (259)
..|++++|+|.+ +.+-. +|+.| .. +++|++ .+++. +...| ++|
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~----ViVdl--G~~~~k~EgiLP~~Eqi-------------------p~E~~----~~G 56 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGL----VVVRI--GTETKASEGVIPAAEQV-------------------PGESY----EHG 56 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTC----EEEEE--CSSSSCEEEEECGGGSC-------------------TTCCC----CTT
T ss_pred cCCCEEEEEEEEccccccCCe----EEEEe--CCCCcceEEEEcHHHcC-------------------CCccC----CCC
Confidence 358889999999 67655 89888 43 599999 44432 22334 999
Q ss_pred Cee----EEEecccc--hhhhhhch
Q 024995 224 RQV----QEIQLSHS--LIRKASKR 242 (259)
Q Consensus 224 ~~V----~~v~~~~~--~i~ls~k~ 242 (259)
|.| ++|+.+.+ +|-||...
T Consensus 57 DrIkayV~~V~~~~~gpqIiLSRt~ 81 (251)
T 2asb_A 57 NRLRCYVVGVTRGAREPLITLSRTH 81 (251)
T ss_dssp CEEEEEEEEEECCSSSCEEEEESSC
T ss_pred CEEEEEEEEEEcCCCCCEEEEEecc
Confidence 999 57776653 46666543
No 88
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=88.56 E-value=1 Score=32.84 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=45.2
Q ss_pred ccCCCCCCEEEEE----eeeEEEEEccCCCCccEEEEEEce-ecCcccccChhhhcCCCCeEEEEEEEEeC
Q 024995 53 SSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDR 118 (259)
Q Consensus 53 ~~~l~~G~iv~G~----~~G~fV~l~~~~g~~gi~glv~is-els~~~~~~~~~~~~~Gd~V~vkVl~id~ 118 (259)
..++-+|++.+|. ++-++|.|.+++ |.+|++--. ++-.++..+..+.+ +|..|+++|+++|.
T Consensus 27 ~~~~~~g~VtkGiVy~kd~~fyV~L~dY~---glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 27 AMDLSPGSVHEGIVYFKDGIFKVRLLGYE---GHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCCSSCEEEEEEEEETTEEEEECTTTS---SCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECS
T ss_pred ccccCCCceEeeEEEEeCCEEEEEecCCC---CceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEecc
Confidence 3478999999999 556789998744 688886421 22223455666666 79999999999986
No 89
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=72.15 E-value=15 Score=30.54 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=41.3
Q ss_pred ccCCCCCCEEEEE-----eeeEEEE-EccCCCCccEEEEEEceecCcccccChh------------hhcCCCCeEEEEEE
Q 024995 53 SSRVNVEDIFVGR-----DYGAFIH-LRFPDGLYHLTGLVHVSEVSWDLIQDIR------------DILNEGDEVRVKVI 114 (259)
Q Consensus 53 ~~~l~~G~iv~G~-----~~G~fV~-l~~~~g~~gi~glv~isels~~~~~~~~------------~~~~~Gd~V~vkVl 114 (259)
.-+..+|+++.|+ +-|+.+- ++ -...+||...|...+.-++. +--++|+.|+++|.
T Consensus 124 VFrPf~GevL~G~V~~~s~~~Ig~~~~G------~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~ 197 (214)
T 2rf4_A 124 VWQPQVGDVLEGYIFIQSASHIGLLIHD------AFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVR 197 (214)
T ss_dssp EECCCTTCEEEEEECCCCSSCEEEEETT------TEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEE
T ss_pred EEecCCCCEEEEEEEEECCCcEEEEEeC------CEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEE
Confidence 4478999999999 4344442 44 46789999988644221111 11236999999999
Q ss_pred EEeCCC
Q 024995 115 KIDREK 120 (259)
Q Consensus 115 ~id~~~ 120 (259)
+++...
T Consensus 198 ~~~~~~ 203 (214)
T 2rf4_A 198 NVHTTG 203 (214)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998643
No 90
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=70.84 E-value=4.7 Score=32.75 Aligned_cols=31 Identities=3% Similarity=-0.234 Sum_probs=26.4
Q ss_pred CCCCccccceeeeccCCCccceeeeecccC-CeeEEEE
Q 024995 152 DSSSMSSSNSNTIEPLPGLGAIFEELLQED-GIDDVRI 188 (259)
Q Consensus 152 ~~g~~v~G~V~~i~~~G~~~~~fv~l~~~~-gv~gl~~ 188 (259)
.+|+.|.|.|+.+.+.+ .++.| .+ -..|+++
T Consensus 6 ~~gDvViG~V~~v~~~~----~~VdI--~~~~~~a~L~ 37 (175)
T 2ja9_A 6 SVNDFVIGVIIGTFSDS----YKVSL--QNFSSSVSLS 37 (175)
T ss_dssp CTTCEEEEEEEEECSSE----EEEES--STTSCCEEEE
T ss_pred CCcCEEEEEEEEEECcE----EEEEE--CCCCccEEEE
Confidence 46888999999999998 99888 66 6889984
No 91
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=68.68 E-value=14 Score=25.63 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=29.5
Q ss_pred eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEE
Q 024995 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (259)
Q Consensus 66 ~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~ 115 (259)
-||+...-+ .+-+.|+|+|.+....-..--..++.||.|...+..
T Consensus 21 GfGFI~~~~-----gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 21 GYGFINRND-----TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp TEEEEEEGG-----GTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred CcEEEecCC-----CCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 466554433 268999999999754111112357899999998854
No 92
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=61.58 E-value=15 Score=26.70 Aligned_cols=53 Identities=15% Similarity=-0.017 Sum_probs=39.0
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEceecCcccc-----cC-hhhhcCCCCeEEEE
Q 024995 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----QD-IRDILNEGDEVRVK 112 (259)
Q Consensus 55 ~l~~G~iv~G~-----~~G~fV~l~~~~g~~gi~glv~isels~~~~-----~~-~~~~~~~Gd~V~vk 112 (259)
....|+.+.+. +.++-|.+.+ |-.+.|+.+.|.|.+- .. +++.+++||.|.|+
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~~~-----g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFRKN-----GETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEETT-----SCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEEcC-----CCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 34456666666 5677788752 5777799999999852 33 66779999999998
No 93
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=55.88 E-value=12 Score=26.62 Aligned_cols=48 Identities=27% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCCEEEEE------eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEE
Q 024995 57 NVEDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (259)
Q Consensus 57 ~~G~iv~G~------~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl 114 (259)
..++...|+ .||+ +.-. + .+-+-|+|+|.+... ...+++||.|...+.
T Consensus 14 ~~~~~~~G~Vk~f~kGfGF-I~~d--d--gg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFGF-IETA--N--HDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEECSSEEE-EECS--S--SSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCCceeEEEEEEECCccE-EecC--C--CCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 356667777 3554 4543 2 268999999999754 245889999998773
No 94
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=55.50 E-value=47 Score=22.71 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=27.0
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
+-+ |+|+|.+.... .+++||.|...+.. + .++.-...++
T Consensus 25 ~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g-~kG~~A~~V~ 63 (74)
T 2k5n_A 25 DNR-YFHVIKVANPD------LIKKDAAVTFEPTT-N-NKGLSAYAVK 63 (74)
T ss_dssp CEE-EEEGGGBSSGG------GCCTTCEEEEEEEE-C-SSSEEEEEEE
T ss_pred Cce-EEEHhHcccCC------CCCCCCEEEEEEEe-C-CCCceeEEEE
Confidence 456 99999997542 57899999999854 3 2554444443
No 95
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=55.05 E-value=34 Score=22.86 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.7
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEEEE
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~i 116 (259)
+-+.|+|+|.+...-. ..+++||.|...+..-
T Consensus 24 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 24 GEDLFAHFSAINMEGF----KTLKEGQRVSFDVTTG 55 (67)
T ss_dssp CCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEEE
T ss_pred CccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 6899999999975421 3578999999998543
No 96
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=54.17 E-value=31 Score=27.08 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=33.0
Q ss_pred CCCEEEEE--------eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEE
Q 024995 58 VEDIFVGR--------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 58 ~G~iv~G~--------~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~i 116 (259)
.|....|+ .||+. .-. + .+-+.|+|++.+... ..+..||.|...+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI-~~d--d--Gg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFI-TPA--D--GGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEE-EES--S--SCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEEe-ccC--C--CCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 35556676 46654 443 1 158999999999632 2588999999998653
No 97
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=53.81 E-value=56 Score=23.14 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=34.2
Q ss_pred CCCCCEEEEE------eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEE
Q 024995 56 VNVEDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (259)
Q Consensus 56 l~~G~iv~G~------~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~ 115 (259)
+.......|+ -|| |+.-. + .+-+.|+|++.+... ...+++||.|...+..
T Consensus 13 ~s~~~~~~G~Vkwf~KGfG-FI~~d--d--gg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 13 TSAALRETGVIEKLLTSYG-FIQCS--E--RQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS 68 (89)
T ss_dssp SSCCCEEEEEEEEECSSEE-EEEET--T--TTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE
T ss_pred CCcccccceEEEEEeCCee-EEecC--C--CCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE
Confidence 3444566676 355 45544 2 258999999999754 2457899999999854
No 98
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=53.48 E-value=24 Score=23.93 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=29.0
Q ss_pred eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEE
Q 024995 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 66 ~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~i 116 (259)
.||+ +.-.+ .+-+.|+|+|.+..... ..++.||.|...+..-
T Consensus 18 GfGF-I~~~~----g~~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 18 GFGF-ITPED----GSKDVFVHFSAIQTNGF----KTLAEGQRVEFEITNG 59 (71)
T ss_dssp TEEE-EEETT----CCCCEEEEGGGBCCSSC----CCCCTTCEEEEEEEEE
T ss_pred CcEE-EecCC----CCccEEEEhHHcccccC----cCCCCCCEEEEEEEEC
Confidence 4664 45441 24799999999975422 3478899999988553
No 99
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=51.06 E-value=30 Score=22.99 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.6
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEEEE
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~i 116 (259)
|-+.|+|+|.+..... ..++.||.|...+..-
T Consensus 23 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 23 GSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEEE
T ss_pred CccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 6899999999976432 3477899999988543
No 100
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=47.33 E-value=23 Score=28.87 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=21.6
Q ss_pred cccceeeeccCCCccceeeeecccCCeeEEEE
Q 024995 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVRI 188 (259)
Q Consensus 157 v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~~ 188 (259)
+.|+|..+.|-+ ++|. |..++|++-|+|
T Consensus 78 ~dG~V~~vfpT~---HAig-i~s~~G~EvLIH 105 (183)
T 3our_B 78 VNGTIGKIFETN---HAFS-IESDDGVELFVH 105 (183)
T ss_dssp SSEEEEEECTTS---SEEE-EEETTSCEEEEE
T ss_pred CCeEEEEECCCC---CEEE-EEeCCCCEEEEE
Confidence 578999998866 4554 556789999986
No 101
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=42.88 E-value=41 Score=24.25 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCEEEEE------eeeEEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEE
Q 024995 59 EDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (259)
Q Consensus 59 G~iv~G~------~~G~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl 114 (259)
.....|+ .||+ +.-. + .+-+.|+|+|.+... ...++.||.|...+.
T Consensus 16 ~~~~~G~Vkwf~KGfGF-I~~d--d--g~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFGF-IERG--D--VVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCCCSSEEE-EECS--S--SCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEEeCCceE-EecC--C--CCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 4456666 4554 4443 1 157999999999754 245789999999883
No 102
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=42.79 E-value=38 Score=23.01 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=24.3
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEEEE
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~i 116 (259)
|-+.|+|+|.+..... ..+++||.|...+..-
T Consensus 23 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 23 DTDVFVHYTAINAKGF----RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp SCCEEEEGGGBCSSSC----SSCCTTCEEEEEEECC
T ss_pred CCcEEEEhhhccccCC----CCCCCCCEEEEEEEEC
Confidence 6789999999975432 3477899999988543
No 103
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=42.44 E-value=56 Score=23.27 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=24.7
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEEEE
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~i 116 (259)
+-+-|+|+|.|...-+ ..+..||.|...+..=
T Consensus 38 g~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 38 PVDVFVHQSKLYMEGF----RSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEGGGBCCSSS----CCCCTTCEEEEEEEEE
T ss_pred CccEEEEeehhcccCC----CccCCCCEEEEEEEEC
Confidence 6789999999965432 3477899999988654
No 104
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=37.32 E-value=91 Score=24.12 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=29.2
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
+-+.|+|+|.|....+ ..++.||.|...+..-+ ++.-...+.
T Consensus 39 g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~g~--kG~~A~~V~ 80 (148)
T 3ts2_A 39 PVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKKSA--KGLESIRVT 80 (148)
T ss_dssp EEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEEET--TEEEEEEEE
T ss_pred CccEEEEhHHhcccCC----ccCCCCCEEEEEEEEcc--ccchhhccc
Confidence 6899999999965432 34788999999996643 454444443
No 105
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=42.06 E-value=7.7 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=23.5
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEEE
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~ 115 (259)
+-+.|+|+|.+..... ..+++||.|...+..
T Consensus 27 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 27 GKDVFVHKSAVDAAGL----HSLEEGQDVIFDLEE 57 (70)
Confidence 5899999999975422 346789999988743
No 106
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=34.73 E-value=81 Score=21.47 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=28.5
Q ss_pred cEEEEEEceecC-cccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEEe
Q 024995 81 HLTGLVHVSEVS-WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (259)
Q Consensus 81 gi~glv~isels-~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K 128 (259)
|-+.|+|+|.+. .... ..+++||.|...+.. + .++.-...++
T Consensus 22 G~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~-g-~kG~~A~~V~ 64 (74)
T 2kcm_A 22 GESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP-T-PKGLAAKAIS 64 (74)
T ss_dssp SCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC-T-TTSCEEEEEE
T ss_pred CceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE-C-CCCceeEEEE
Confidence 689999999997 4322 357899999998843 3 3555444443
No 107
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=34.02 E-value=42 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.504 Sum_probs=26.0
Q ss_pred hhhhcCCCCeEEEEEEEEeCCCCeeEEEEecccc
Q 024995 99 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132 (259)
Q Consensus 99 ~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~ 132 (259)
+.+.+.+||.|.++|++++ .+++.|.+.+...
T Consensus 8 ~GEsI~IGd~I~ItVl~v~--g~~VrLGI~APk~ 39 (70)
T 2jpp_A 8 VGESINIGDDITITILGVS--GQQVRIGINAPKD 39 (70)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEECCTT
T ss_pred CCCeEEECCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 4566788999999999997 6889998876544
No 108
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=33.78 E-value=43 Score=22.41 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=26.3
Q ss_pred ChhhhcCCCCeEEEEEEEEeCCCCeeEEEEecccc
Q 024995 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132 (259)
Q Consensus 98 ~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~ 132 (259)
.+.+.+.+||.|.++|++++ .+++.|.+.+...
T Consensus 9 k~GE~I~Igd~I~I~Vl~i~--g~~VrlGI~AP~~ 41 (63)
T 2bti_A 9 RVGETLMIGDEVTVTVLGVK--GNQVRIGVNAPKE 41 (63)
T ss_dssp ETTCEEEETTTEEEEEEEEE--TTEEEEEEEECTT
T ss_pred cCCCeEEeCCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 34566788999999999997 6889988876544
No 109
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=31.11 E-value=41 Score=23.21 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=26.6
Q ss_pred ChhhhcCCCCeEEEEEEEEeCCCCeeEEEEecccc
Q 024995 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132 (259)
Q Consensus 98 ~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~K~~~~ 132 (259)
.+.+.+.+||.|+++|+++. .+++.|.+.+...
T Consensus 19 K~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk~ 51 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVK--GNQVRIGVNAPKE 51 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEE--TTEEEEEEEEETT
T ss_pred cCCCEEEeCCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 45677889999999999997 6888888866443
No 110
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=27.07 E-value=1.4e+02 Score=22.03 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=28.2
Q ss_pred CCCCEEEE--EEEEEeCCCCEEEEEechh--------hHhhhccCCCCCCEEEEE
Q 024995 21 LTGSIISV--KVIQANEEMKKLVFSEKDA--------VWNKYSSRVNVEDIFVGR 65 (259)
Q Consensus 21 ~vG~~v~~--~Vl~id~~~~~v~lS~k~~--------~~~~~~~~l~~G~iv~G~ 65 (259)
-+|++|+| +|.+++ ++.+.|..... ..+.+ .+.+|+++...
T Consensus 19 ~~G~KVRFLGCV~sY~--tg~L~Le~~~~~v~VDV~lvL~~l--~~~vGeWvNVv 69 (105)
T 3kf6_B 19 KDGQKLRFLGCVQSYK--NGILRLIDGSSSVTCDVTVVLPDV--SIQKHEWLNIV 69 (105)
T ss_dssp CTTCEEEEEEEEEEEE--TTEEEEEETTEEEEEECTTSCCSS--CCCTTCEEEEE
T ss_pred CCCCEEEEEEEeeeec--cEEEEEccCCcEEEEEHHHhhchh--eeecccEEEEE
Confidence 38999997 489998 78877773321 12233 78889987655
No 111
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=26.26 E-value=29 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=23.2
Q ss_pred cEEEEEEceecCcccccChhhhcCCCCeEEEEEE
Q 024995 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (259)
Q Consensus 81 gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl 114 (259)
|-+.|+|+|.+..... ..+++||.|...+.
T Consensus 22 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~ 51 (66)
T 1g6p_A 22 GGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQ 51 (66)
T ss_dssp SCBCBBCSSSSCCSSC----CCCCSSSEEEEEEE
T ss_pred CceEEEEhHHccccCC----CCCCCCCEEEEEEE
Confidence 6789999999975422 34788999998874
No 112
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.97 E-value=40 Score=23.52 Aligned_cols=60 Identities=18% Similarity=0.073 Sum_probs=36.7
Q ss_pred CCEEEEEeee-EEEEEccCCCCccEEEEEEceecCcccccChhhhcCCCCeEEEEEEEEeCCCCeeEEEE
Q 024995 59 EDIFVGRDYG-AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (259)
Q Consensus 59 G~iv~G~~~G-~fV~l~~~~g~~gi~glv~isels~~~~~~~~~~~~~Gd~V~vkVl~id~~~~ri~lS~ 127 (259)
|.++++.+.| ..|.+. .|..-++|++=--.. -.-.+-+||.|.+.+-..|..+++|....
T Consensus 18 G~Vik~l~n~~f~V~l~-----nG~~~~c~i~GK~Rk----~~I~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 18 GRVVEPLPNAMFRIELE-----NGHKVLAHISGKMRQ----HYIRILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEETTTEEEEEET-----TSCEEEEEECHHHHH----TTCCCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEcCCCEEEEEeC-----CCCEEEEEeCcceec----CCccCCCCCEEEEEECccCCCcEEEEEEc
Confidence 5555555333 457776 266667776532111 01136789999999887887778877643
No 113
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=22.65 E-value=1.4e+02 Score=23.49 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=31.8
Q ss_pred cccceeeeccCCCccceeeeecccCCeeEEEEccccccccccchhhhhhcccCCCCCcceeeeccCCCee
Q 024995 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQV 226 (259)
Q Consensus 157 v~G~V~~i~~~G~~~~~fv~l~~~~gv~gl~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~V 226 (259)
+.|+|..+.+-+ +++ -|..++|++-|+|=-+. + +.-....|+..++.||.|
T Consensus 56 ~~G~V~~v~~t~---hAi-gi~t~~G~evLiHIGid--------T-------V~l~G~gF~~~V~~Gd~V 106 (162)
T 1ax3_A 56 VRGKILNVFPTK---HAI-GLQSDGGREILIHFGID--------T-------VSLKGEGFTSFVSEGDRV 106 (162)
T ss_dssp CCEEEEECCSSS---SEE-EEESSSSCEEEEECSSS--------T-------TTTTTTTEEESCCCCSEE
T ss_pred CCeEEEEEccCC---eEE-EEEcCCCCEEEEEECcc--------c-------hhcCCCccEEEEeCCCEE
Confidence 678899987755 333 36667899988852221 1 111223477777788777
Done!